BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] (236 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] gi|254040570|gb|ACT57366.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 236 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 236/236 (100%), Positives = 236/236 (100%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF Sbjct: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR Sbjct: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD Sbjct: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA Sbjct: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 >gi|315122690|ref|YP_004063179.1| two component response regulator [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496092|gb|ADR52691.1| two component response regulator [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 236 Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust. Identities = 205/236 (86%), Positives = 219/236 (92%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD ALA+SIELMLKSENFNVYVT+LGEDG++L K Y++D I+LDL L DI GF Sbjct: 1 MRVLLIEDDSALANSIELMLKSENFNVYVTNLGEDGVDLGKIYDYDIILLDLNLPDISGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+ISTPVCILSGMSSIEDKVRGL GADDYISKP NK+ELVARI AIVRRSR Sbjct: 61 EVLRTLRMARISTPVCILSGMSSIEDKVRGLGYGADDYISKPLNKDELVARIHAIVRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD Sbjct: 121 GHAQSVIATGDLVVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 GRDEPEVKIIDVFICKLRKKLSNAA GKNYIETVWGRGYVLRE+ K+ TCEYLETA Sbjct: 181 GRDEPEVKIIDVFICKLRKKLSNAADGKNYIETVWGRGYVLRESDKNATCEYLETA 236 >gi|222149588|ref|YP_002550545.1| two component response regulator [Agrobacterium vitis S4] gi|221736570|gb|ACM37533.1| two component response regulator [Agrobacterium vitis S4] Length = 233 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 177/236 (75%), Positives = 207/236 (87%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIITGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE ++ EY+ETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE---PDSAEYMETA 233 >gi|15889704|ref|NP_355385.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15157614|gb|AAK88170.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 234 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/236 (75%), Positives = 205/236 (86%), Gaps = 2/236 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE D E+LETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE--PDGAAEFLETA 234 >gi|325293784|ref|YP_004279648.1| cell cycle transcriptional regulator ctrA [Agrobacterium sp. H13-3] gi|325061637|gb|ADY65328.1| cell cycle transcriptional regulator ctrA [Agrobacterium sp. H13-3] Length = 234 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/236 (75%), Positives = 205/236 (86%), Gaps = 2/236 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE D E+LETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE--PDGATEFLETA 234 >gi|15966471|ref|NP_386824.1| response regulator,controls chromosomal replication initiation protein [Sinorhizobium meliloti 1021] gi|307300492|ref|ZP_07580272.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307318357|ref|ZP_07597792.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|9858148|gb|AAG01017.1|AF288464_1 response regulator CtrA [Sinorhizobium meliloti] gi|15075742|emb|CAC47297.1| Cell cycle transcriptional regulator CtrA, autoregulated, response regulator [Sinorhizobium meliloti 1021] gi|306896039|gb|EFN26790.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306904658|gb|EFN35242.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 233 Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 178/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE E +YLETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE---PEGSDYLETA 233 >gi|150397803|ref|YP_001328270.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029318|gb|ABR61435.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 233 Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 178/236 (75%), Positives = 204/236 (86%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE E YLETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE---PEGSAYLETA 233 >gi|116253499|ref|YP_769337.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|209550655|ref|YP_002282572.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|241206026|ref|YP_002977122.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115258147|emb|CAK09248.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|209536411|gb|ACI56346.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240859916|gb|ACS57583.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 233 Score = 366 bits (939), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE + EY ETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE---PDGAEYAETA 233 >gi|86358932|ref|YP_470824.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CFN 42] gi|190893160|ref|YP_001979702.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CIAT 652] gi|218682349|ref|ZP_03529950.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CIAT 894] gi|86283034|gb|ABC92097.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CFN 42] gi|190698439|gb|ACE92524.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CIAT 652] Length = 233 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE + EY ETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE---PDGTEYAETA 233 >gi|227823287|ref|YP_002827259.1| two component response regulator [Sinorhizobium fredii NGR234] gi|227342288|gb|ACP26506.1| two component response regulator [Sinorhizobium fredii NGR234] Length = 233 Score = 365 bits (937), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIATGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE + +YLETA Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE---PDGNDYLETA 233 >gi|220923532|ref|YP_002498834.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219948139|gb|ACL58531.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 233 Score = 365 bits (937), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 174/228 (76%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE + DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREPSDDE 228 >gi|222086833|ref|YP_002545367.1| two-component response regulator protein controls chromosomal replication initiation [Agrobacterium radiobacter K84] gi|221724281|gb|ACM27437.1| two-component response regulator protein controls chromosomal replication initiation [Agrobacterium radiobacter K84] Length = 233 Score = 364 bits (935), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 174/231 (75%), Positives = 202/231 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE +E E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREPDNNELAE 231 >gi|170742091|ref|YP_001770746.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168196365|gb|ACA18312.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 233 Score = 364 bits (935), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 174/228 (76%), Positives = 199/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREPTDDE 228 >gi|254473206|ref|ZP_05086604.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] gi|211957927|gb|EEA93129.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] Length = 229 Score = 363 bits (933), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 172/223 (77%), Positives = 198/223 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV+K+ TP+ ILSG++ IEDKVRGL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 61 EVLRTLRVSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL+VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLTVNLDTKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL++A GKNYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLASATAGKNYIETVWGRGYVLRE 223 >gi|163850257|ref|YP_001638300.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218528815|ref|YP_002419631.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240137328|ref|YP_002961797.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA) [Methylobacterium extorquens AM1] gi|254559507|ref|YP_003066602.1| cell cycle transcriptional regulator ctrA [Methylobacterium extorquens DM4] gi|163661862|gb|ABY29229.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218521118|gb|ACK81703.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|240007294|gb|ACS38520.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA) [Methylobacterium extorquens AM1] gi|254266785|emb|CAX22584.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA) [Methylobacterium extorquens DM4] Length = 233 Score = 363 bits (933), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 173/228 (75%), Positives = 199/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE + E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASAGKNYIETVWGRGYVLREPVEGE 228 >gi|307944614|ref|ZP_07659954.1| cell cycle transcriptional regulator CtrA [Roseibium sp. TrichSKD4] gi|307772363|gb|EFO31584.1| cell cycle transcriptional regulator CtrA [Roseibium sp. TrichSKD4] Length = 230 Score = 363 bits (932), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 174/223 (78%), Positives = 197/223 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV+K+ TP+ ILSG + IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLKVNLDTKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL++AA GKNYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLASAASGKNYIETVWGRGYVLRE 223 >gi|114707174|ref|ZP_01440072.1| response regulator,controls chromosomal replication initiation protein [Fulvimarina pelagi HTCC2506] gi|114537370|gb|EAU40496.1| response regulator,controls chromosomal replication initiation protein [Fulvimarina pelagi HTCC2506] Length = 230 Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 172/223 (77%), Positives = 199/223 (89%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDLILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVINTGDLTVNLDAKTVEVGGQRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+NA GGKNYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANATGGKNYIETVWGRGYVLRE 223 >gi|188580015|ref|YP_001923460.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179343513|gb|ACB78925.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 233 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 173/228 (75%), Positives = 199/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE + E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGKNYIETVWGRGYVLREPVEGE 228 >gi|163758753|ref|ZP_02165840.1| response regulator,controls chromosomal replication initiation protein [Hoeflea phototrophica DFL-43] gi|162284043|gb|EDQ34327.1| response regulator,controls chromosomal replication initiation protein [Hoeflea phototrophica DFL-43] Length = 233 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 173/231 (74%), Positives = 200/231 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEV R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVGSQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G DEPE+KIIDVFICKLRKKL+ +AGGKNYIETVWGRGYVLRE + E E Sbjct: 181 GMDEPELKIIDVFICKLRKKLATSAGGKNYIETVWGRGYVLREPDESEILE 231 >gi|296444660|ref|ZP_06886624.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296257928|gb|EFH04991.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 233 Score = 362 bits (928), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 172/226 (76%), Positives = 200/226 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNVYATDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRVAK+ TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIITGDLVVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNYIETVWGRGYVLREPSE 226 >gi|170751941|ref|YP_001758201.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658463|gb|ACB27518.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 233 Score = 361 bits (926), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 173/228 (75%), Positives = 198/228 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREPMDGE 228 >gi|323137579|ref|ZP_08072656.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322397205|gb|EFX99729.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 233 Score = 360 bits (924), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 175/229 (76%), Positives = 200/229 (87%), Gaps = 1/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRVAK+ TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIATGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE N DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNYIETVWGRGYVLREPNEADE 229 >gi|118588295|ref|ZP_01545704.1| two-component transcriptional regulator [Stappia aggregata IAM 12614] gi|118439001|gb|EAV45633.1| two-component transcriptional regulator [Stappia aggregata IAM 12614] Length = 243 Score = 360 bits (924), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 173/223 (77%), Positives = 195/223 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 14 MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV+K+ TP+ ILSG + IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 74 EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 133 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 134 GHAQSVIVTGDLKVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 193 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ A GKNYIETVWGRGYVLRE Sbjct: 194 GMDEPELKIIDVFICKLRKKLAAATSGKNYIETVWGRGYVLRE 236 >gi|13472497|ref|NP_104064.1| two-component transcriptional regulator [Mesorhizobium loti MAFF303099] gi|260462502|ref|ZP_05810709.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|319781794|ref|YP_004141270.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14023243|dbj|BAB49850.1| two-component transcriptional regulator [Mesorhizobium loti MAFF303099] gi|259031698|gb|EEW32967.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|317167682|gb|ADV11220.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 231 Score = 360 bits (923), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 171/223 (76%), Positives = 197/223 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL A+GG+NYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAASGGQNYIETVWGRGYVLRE 223 >gi|254503130|ref|ZP_05115281.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222439201|gb|EEE45880.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 230 Score = 360 bits (923), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 173/223 (77%), Positives = 195/223 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDNATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV+K+ TP+ ILSG + IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLKVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ A GKNYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAATSGKNYIETVWGRGYVLRE 223 >gi|170745397|ref|YP_001766854.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658998|gb|ACB28052.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 233 Score = 360 bits (923), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 171/223 (76%), Positives = 198/223 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD ++A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDVSVAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLRE 223 >gi|304393343|ref|ZP_07375271.1| cell cycle transcriptional regulator CtrA [Ahrensia sp. R2A130] gi|303294350|gb|EFL88722.1| cell cycle transcriptional regulator CtrA [Ahrensia sp. R2A130] Length = 234 Score = 359 bits (922), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 170/231 (73%), Positives = 200/231 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 2 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSG++ IEDKVRGL GADDY++KPF+K+ELVARI+AIVRRS+ Sbjct: 62 EVLRTLRLSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELVARIQAIVRRSK 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA+S+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 122 GHAESIITTGDLKVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G DEPE+KIIDVFICKLRKKL++A GG N+IETVWGRGYVLRE E E Sbjct: 182 GMDEPELKIIDVFICKLRKKLASATGGTNFIETVWGRGYVLREPEGAELAE 232 >gi|158422824|ref|YP_001524116.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158329713|dbj|BAF87198.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 233 Score = 358 bits (918), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 169/223 (75%), Positives = 198/223 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K YE+D I+LDL L D+ GF Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKVYEYDIILLDLNLPDMSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR+LR+AK+ TP+ ILSG+++ EDKV+G GADDY++KPF+K+E+VARI AIVRRS+ Sbjct: 61 EVLRSLRLAKVKTPILILSGLANTEDKVKGFGFGADDYLTKPFHKDEMVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV+G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVEGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASAGKNYIETVWGRGYVLRE 223 >gi|209886225|ref|YP_002290082.1| cell cycle transcriptional regulator CtrA [Oligotropha carboxidovorans OM5] gi|209874421|gb|ACI94217.1| cell cycle transcriptional regulator CtrA [Oligotropha carboxidovorans OM5] Length = 233 Score = 358 bits (918), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 171/229 (74%), Positives = 201/229 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE ++DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPSEDEA 229 >gi|182677341|ref|YP_001831487.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633224|gb|ACB93998.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 233 Score = 358 bits (918), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 171/228 (75%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A S+ELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSVELMLKSENFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRVAK+ TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TGDL VNLD KTVE+ G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIMTGDLIVNLDQKTVEICGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE +E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGRNYIETVWGRGYVLREPNDEE 228 >gi|110634562|ref|YP_674770.1| two component transcriptional regulator / cell cycle transcriptional regulator CtrA [Mesorhizobium sp. BNC1] gi|110285546|gb|ABG63605.1| cell cycle transcriptional regulator CtrA [Chelativorans sp. BNC1] Length = 249 Score = 357 bits (917), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 170/223 (76%), Positives = 197/223 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 19 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 79 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 138 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 139 GHAQSVITTGDLIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 198 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL A+GG+NYIETVWGRGYVLRE Sbjct: 199 GMDEPELKIIDVFICKLRKKLDMASGGQNYIETVWGRGYVLRE 241 >gi|90419036|ref|ZP_01226947.1| two component repsonse/transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90337116|gb|EAS50821.1| two component repsonse/transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 231 Score = 357 bits (917), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 170/223 (76%), Positives = 197/223 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDLILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVINTGDLTVNLDAKTVEVNGQRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ A GKNYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLATATEGKNYIETVWGRGYVLRE 223 >gi|299134363|ref|ZP_07027556.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298591110|gb|EFI51312.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 233 Score = 357 bits (915), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 170/229 (74%), Positives = 200/229 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE + DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPSDDEA 229 >gi|328542574|ref|YP_004302683.1| Two-component transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326412320|gb|ADZ69383.1| Two-component transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 228 Score = 356 bits (914), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 171/221 (77%), Positives = 194/221 (87%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+EV Sbjct: 1 MLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGYEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LRV+K+ TP+ ILSG++ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+GH Sbjct: 61 LRTLRVSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSKGH 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 AQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G Sbjct: 121 AQSVIVTGDLRVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGM 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKL+ A GKNYIETVWGRGYVLRE Sbjct: 181 DEPELKIIDVFICKLRKKLAAATSGKNYIETVWGRGYVLRE 221 >gi|115526264|ref|YP_783175.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520211|gb|ABJ08195.1| cell cycle transcriptional regulator CtrA / two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 233 Score = 356 bits (914), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 169/228 (74%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE +DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPTEDE 228 >gi|92118832|ref|YP_578561.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801726|gb|ABE64101.1| cell cycle transcriptional regulator CtrA [Nitrobacter hamburgensis X14] Length = 233 Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 169/229 (73%), Positives = 201/229 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE +DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPHEDEA 229 >gi|298292563|ref|YP_003694502.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296929074|gb|ADH89883.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 168/228 (73%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDRATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKGLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G+R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLVVNLDTKTVEVAGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G N+IETVWGRGYVLRE + E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGHNFIETVWGRGYVLREMGEQE 228 >gi|75674723|ref|YP_317144.1| transcriptional regulatory protein [Nitrobacter winogradskyi Nb-255] gi|74419593|gb|ABA03792.1| cell cycle transcriptional regulator CtrA [Nitrobacter winogradskyi Nb-255] Length = 233 Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 169/228 (74%), Positives = 201/228 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE +DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEDE 228 >gi|39934702|ref|NP_946978.1| two-component cell cycle transcriptional regulatorCtrA [Rhodopseudomonas palustris CGA009] gi|192290218|ref|YP_001990823.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|316935200|ref|YP_004110182.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|39648552|emb|CAE27073.1| two-component cell cycle transcriptional regulator ctrA, winged helix family [Rhodopseudomonas palustris CGA009] gi|192283967|gb|ACF00348.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|315602914|gb|ADU45449.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 233 Score = 355 bits (912), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 168/228 (73%), Positives = 201/228 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE ++D+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPSEDD 228 >gi|85713634|ref|ZP_01044624.1| Transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85699538|gb|EAQ37405.1| Transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 233 Score = 355 bits (911), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 169/228 (74%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHDDE 228 >gi|153008899|ref|YP_001370114.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|223635103|sp|A6WZ81|CTRA_OCHA4 RecName: Full=Cell cycle response regulator CtrA gi|151560787|gb|ABS14285.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 232 Score = 355 bits (911), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/223 (75%), Positives = 196/223 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL +G ++YIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGSQSYIETVWGRGYVLRE 223 >gi|239832477|ref|ZP_04680806.1| response regulator CTRA [Ochrobactrum intermedium LMG 3301] gi|239824744|gb|EEQ96312.1| response regulator CTRA [Ochrobactrum intermedium LMG 3301] Length = 232 Score = 355 bits (910), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/223 (75%), Positives = 196/223 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL +G ++YIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGSQSYIETVWGRGYVLRE 223 >gi|17986706|ref|NP_539340.1| response regulator CTRA [Brucella melitensis bv. 1 str. 16M] gi|23502462|ref|NP_698589.1| cell cycle transcriptional regulator CtrA [Brucella suis 1330] gi|62290479|ref|YP_222272.1| cell cycle transcriptional regulator CtrA [Brucella abortus bv. 1 str. 9-941] gi|82700402|ref|YP_414976.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148559147|ref|YP_001259466.1| cell cycle transcriptional regulator CtrA [Brucella ovis ATCC 25840] gi|161619539|ref|YP_001593426.1| hypothetical protein BCAN_A1634 [Brucella canis ATCC 23365] gi|163843848|ref|YP_001628252.1| hypothetical protein BSUIS_A1654 [Brucella suis ATCC 23445] gi|189024706|ref|YP_001935474.1| transcriptional regulator [Brucella abortus S19] gi|225628033|ref|ZP_03786069.1| response regulator CTRA [Brucella ceti str. Cudo] gi|225853072|ref|YP_002733305.1| hypothetical protein BMEA_A1651 [Brucella melitensis ATCC 23457] gi|237815987|ref|ZP_04594984.1| response regulator CTRA [Brucella abortus str. 2308 A] gi|254689779|ref|ZP_05153033.1| hypothetical protein Babob68_06309 [Brucella abortus bv. 6 str. 870] gi|254694268|ref|ZP_05156096.1| hypothetical protein Babob3T_06319 [Brucella abortus bv. 3 str. Tulya] gi|254697923|ref|ZP_05159751.1| hypothetical protein Babob28_09480 [Brucella abortus bv. 2 str. 86/8/59] gi|254702316|ref|ZP_05164144.1| hypothetical protein Bsuib55_15851 [Brucella suis bv. 5 str. 513] gi|254704844|ref|ZP_05166672.1| hypothetical protein Bsuib36_13179 [Brucella suis bv. 3 str. 686] gi|254708258|ref|ZP_05170086.1| hypothetical protein BpinM_15199 [Brucella pinnipedialis M163/99/10] gi|254710630|ref|ZP_05172441.1| hypothetical protein BpinB_10241 [Brucella pinnipedialis B2/94] gi|254714814|ref|ZP_05176625.1| hypothetical protein BcetM6_16039 [Brucella ceti M644/93/1] gi|254717874|ref|ZP_05179685.1| hypothetical protein BcetM_16006 [Brucella ceti M13/05/1] gi|254719624|ref|ZP_05181435.1| hypothetical protein Bru83_08785 [Brucella sp. 83/13] gi|254730813|ref|ZP_05189391.1| hypothetical protein Babob42_06339 [Brucella abortus bv. 4 str. 292] gi|256032123|ref|ZP_05445737.1| hypothetical protein BpinM2_16008 [Brucella pinnipedialis M292/94/1] gi|256045215|ref|ZP_05448113.1| hypothetical protein Bmelb1R_12041 [Brucella melitensis bv. 1 str. Rev.1] gi|256061645|ref|ZP_05451784.1| hypothetical protein Bneo5_14960 [Brucella neotomae 5K33] gi|256114167|ref|ZP_05454921.1| hypothetical protein Bmelb3E_15257 [Brucella melitensis bv. 3 str. Ether] gi|256160319|ref|ZP_05458013.1| hypothetical protein BcetM4_15036 [Brucella ceti M490/95/1] gi|256255524|ref|ZP_05461060.1| hypothetical protein BcetB_14813 [Brucella ceti B1/94] gi|256258031|ref|ZP_05463567.1| hypothetical protein Babob9C_11923 [Brucella abortus bv. 9 str. C68] gi|256263445|ref|ZP_05465977.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|256370012|ref|YP_003107523.1| cell cycle transcriptional regulator CtrA [Brucella microti CCM 4915] gi|260169258|ref|ZP_05756069.1| cell cycle transcriptional regulator CtrA [Brucella sp. F5/99] gi|260547010|ref|ZP_05822749.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260565187|ref|ZP_05835671.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260565914|ref|ZP_05836384.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260755311|ref|ZP_05867659.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758532|ref|ZP_05870880.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762356|ref|ZP_05874699.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884328|ref|ZP_05895942.1| response regulator CtrA [Brucella abortus bv. 9 str. C68] gi|261214576|ref|ZP_05928857.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261219720|ref|ZP_05934001.1| response regulator CtrA [Brucella ceti M13/05/1] gi|261222734|ref|ZP_05937015.1| response regulator CtrA [Brucella ceti B1/94] gi|261315759|ref|ZP_05954956.1| response regulator CtrA [Brucella pinnipedialis M163/99/10] gi|261318202|ref|ZP_05957399.1| response regulator CtrA [Brucella pinnipedialis B2/94] gi|261322609|ref|ZP_05961806.1| response regulator CtrA [Brucella ceti M644/93/1] gi|261325655|ref|ZP_05964852.1| response regulator CtrA [Brucella neotomae 5K33] gi|261752882|ref|ZP_05996591.1| response regulator CtrA [Brucella suis bv. 5 str. 513] gi|261755541|ref|ZP_05999250.1| response regulator CtrA [Brucella suis bv. 3 str. 686] gi|261758771|ref|ZP_06002480.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|265984635|ref|ZP_06097370.1| response regulator CtrA [Brucella sp. 83/13] gi|265989235|ref|ZP_06101792.1| response regulator CtrA [Brucella pinnipedialis M292/94/1] gi|265991648|ref|ZP_06104205.1| response regulator CtrA [Brucella melitensis bv. 1 str. Rev.1] gi|265995486|ref|ZP_06108043.1| response regulator CtrA [Brucella melitensis bv. 3 str. Ether] gi|265998696|ref|ZP_06111253.1| response regulator CtrA [Brucella ceti M490/95/1] gi|294852911|ref|ZP_06793584.1| cell cycle response regulator ctrA [Brucella sp. NVSL 07-0026] gi|297248862|ref|ZP_06932580.1| cell cycle response regulator ctrA [Brucella abortus bv. 5 str. B3196] gi|306837741|ref|ZP_07470609.1| response regulator CTRA [Brucella sp. NF 2653] gi|306843047|ref|ZP_07475672.1| response regulator CTRA [Brucella sp. BO2] gi|306844599|ref|ZP_07477186.1| response regulator CTRA [Brucella sp. BO1] gi|81325649|sp|Q9ZHS1|CTRA_BRUAB RecName: Full=Cell cycle response regulator CtrA gi|81752222|sp|Q8FZ93|CTRA_BRUSU RecName: Full=Cell cycle response regulator CtrA gi|81832695|sp|Q7CNV1|CTRA_BRUME RecName: Full=Cell cycle response regulator CtrA gi|123547126|sp|Q2YQA4|CTRA_BRUA2 RecName: Full=Cell cycle response regulator CtrA gi|223635099|sp|B2S753|CTRA_BRUA1 RecName: Full=Cell cycle response regulator CtrA gi|223635100|sp|A9M708|CTRA_BRUC2 RecName: Full=Cell cycle response regulator CtrA gi|223635101|sp|A5VRW9|CTRA_BRUO2 RecName: Full=Cell cycle response regulator CtrA gi|223635102|sp|B0CI76|CTRA_BRUSI RecName: Full=Cell cycle response regulator CtrA gi|19223933|gb|AAL86376.1|AF411570_1 response regulator CtrA [Brucella abortus] gi|2952543|gb|AAC69920.1| response regulator CtrA [Brucella abortus] gi|17982329|gb|AAL51604.1| response regulator ctra [Brucella melitensis bv. 1 str. 16M] gi|23348453|gb|AAN30504.1| cell cycle transcriptional regulator CtrA [Brucella suis 1330] gi|62196611|gb|AAX74911.1| CtrA, cell cycle transcriptional regulator CtrA [Brucella abortus bv. 1 str. 9-941] gi|82616503|emb|CAJ11570.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|148370404|gb|ABQ60383.1| cell cycle transcriptional regulator CtrA [Brucella ovis ATCC 25840] gi|161336350|gb|ABX62655.1| Hypothetical protein BCAN_A1634 [Brucella canis ATCC 23365] gi|163674571|gb|ABY38682.1| Hypothetical protein BSUIS_A1654 [Brucella suis ATCC 23445] gi|189020278|gb|ACD73000.1| Transcriptional regulatory protein [Brucella abortus S19] gi|225617196|gb|EEH14242.1| response regulator CTRA [Brucella ceti str. Cudo] gi|225641437|gb|ACO01351.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|237789285|gb|EEP63496.1| response regulator CTRA [Brucella abortus str. 2308 A] gi|256000175|gb|ACU48574.1| cell cycle transcriptional regulator CtrA [Brucella microti CCM 4915] gi|260096060|gb|EEW79937.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260151255|gb|EEW86349.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260155432|gb|EEW90512.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260668850|gb|EEX55790.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260672788|gb|EEX59609.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675419|gb|EEX62240.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260873856|gb|EEX80925.1| response regulator CtrA [Brucella abortus bv. 9 str. C68] gi|260916183|gb|EEX83044.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260921318|gb|EEX87971.1| response regulator CtrA [Brucella ceti B1/94] gi|260924809|gb|EEX91377.1| response regulator CtrA [Brucella ceti M13/05/1] gi|261295299|gb|EEX98795.1| response regulator CtrA [Brucella ceti M644/93/1] gi|261297425|gb|EEY00922.1| response regulator CtrA [Brucella pinnipedialis B2/94] gi|261301635|gb|EEY05132.1| response regulator CtrA [Brucella neotomae 5K33] gi|261304785|gb|EEY08282.1| response regulator CtrA [Brucella pinnipedialis M163/99/10] gi|261738755|gb|EEY26751.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261742635|gb|EEY30561.1| response regulator CtrA [Brucella suis bv. 5 str. 513] gi|261745294|gb|EEY33220.1| response regulator CtrA [Brucella suis bv. 3 str. 686] gi|262553320|gb|EEZ09154.1| response regulator CtrA [Brucella ceti M490/95/1] gi|262766599|gb|EEZ12388.1| response regulator CtrA [Brucella melitensis bv. 3 str. Ether] gi|263002432|gb|EEZ15007.1| response regulator CtrA [Brucella melitensis bv. 1 str. Rev.1] gi|263093453|gb|EEZ17503.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264661432|gb|EEZ31693.1| response regulator CtrA [Brucella pinnipedialis M292/94/1] gi|264663227|gb|EEZ33488.1| response regulator CtrA [Brucella sp. 83/13] gi|294821500|gb|EFG38499.1| cell cycle response regulator ctrA [Brucella sp. NVSL 07-0026] gi|297176031|gb|EFH35378.1| cell cycle response regulator ctrA [Brucella abortus bv. 5 str. B3196] gi|306275043|gb|EFM56806.1| response regulator CTRA [Brucella sp. BO1] gi|306286777|gb|EFM58323.1| response regulator CTRA [Brucella sp. BO2] gi|306407197|gb|EFM63408.1| response regulator CTRA [Brucella sp. NF 2653] gi|326409615|gb|ADZ66680.1| Transcriptional regulatory protein [Brucella melitensis M28] gi|326539318|gb|ADZ87533.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 232 Score = 355 bits (910), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/223 (75%), Positives = 196/223 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL +G ++YIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGNQSYIETVWGRGYVLRE 223 >gi|86751020|ref|YP_487516.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|91978137|ref|YP_570796.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|86574048|gb|ABD08605.1| two component transcriptional regulator, winged helix family / cell cycle transcriptional regulator CtrA [Rhodopseudomonas palustris HaA2] gi|91684593|gb|ABE40895.1| cell cycle transcriptional regulator CtrA [Rhodopseudomonas palustris BisB5] Length = 233 Score = 355 bits (910), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/228 (73%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE +D+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPTEDD 228 >gi|217978668|ref|YP_002362815.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217504044|gb|ACK51453.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 233 Score = 354 bits (909), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 171/228 (75%), Positives = 196/228 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSENFNVY TDLGE+G +L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSENFNVYATDLGEEGADLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV K+ TP+ ILSG ++IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRRLRVGKVKTPILILSGFAAIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I T DL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIATSDLIVNLDQKTVEVDGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASRGRNYIETVWGRGYVLREPLDDE 228 >gi|154247416|ref|YP_001418374.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161501|gb|ABS68717.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 233 Score = 354 bits (908), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 167/223 (74%), Positives = 197/223 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A IELMLK+E+FNVY T+LGE+G++L K YE+D I+LDL L D+ GF Sbjct: 1 MRVLLIEDDSATARGIELMLKTESFNVYTTNLGEEGVDLGKVYEYDIILLDLNLPDMSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRALRVAK+ TP+ ILSG+++ EDKV+G GADDY++KPF+K+E+VARI AIVRRS+ Sbjct: 61 EVLRALRVAKVKTPILILSGLANTEDKVKGFGFGADDYLTKPFHKDEMVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV+ +R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVENNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASAGKNYIETVWGRGYVLRE 223 >gi|90425706|ref|YP_534076.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107720|gb|ABD89757.1| two component transcriptional regulator, winged helix family / cell cycle transcriptional regulator CtrA [Rhodopseudomonas palustris BisB18] Length = 233 Score = 353 bits (907), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 168/229 (73%), Positives = 200/229 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE ++E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPHEEEA 229 >gi|27377311|ref|NP_768840.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27350454|dbj|BAC47465.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 233 Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 168/228 (73%), Positives = 200/228 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE + E Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEHE 228 >gi|300023992|ref|YP_003756603.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299525813|gb|ADJ24282.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 232 Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 166/223 (74%), Positives = 196/223 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELML+SE FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLQSEGFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LRV+K+STP+ ILSG++ I+DKVRGL GADDY++KPF+K+ELVARI+AIVRRS+ Sbjct: 61 EVLKTLRVSKVSTPILILSGLAGIDDKVRGLGFGADDYMTKPFHKDELVARIQAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTV+V G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIETGDLRVNLDTKTVDVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL A GGK+YIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLQTATGGKHYIETVWGRGYVLRD 223 >gi|146338575|ref|YP_001203623.1| two-component cell cycle transcriptional regulator ctrA [Bradyrhizobium sp. ORS278] gi|146191381|emb|CAL75386.1| Two-component cell cycle transcriptional regulator ctrA [Bradyrhizobium sp. ORS278] Length = 233 Score = 351 bits (901), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 166/223 (74%), Positives = 198/223 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLRE 223 >gi|148257763|ref|YP_001242348.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp. BTAi1] gi|146409936|gb|ABQ38442.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp. BTAi1] Length = 233 Score = 351 bits (901), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 166/223 (74%), Positives = 198/223 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRV+KI TP+ ILSG++ IEDKV+GL GADDY++KPF+K+EL+ARI AIVRRS+ Sbjct: 61 DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLRE 223 >gi|49475924|ref|YP_033965.1| cell cycle transcriptional regulator ctra [Bartonella henselae str. Houston-1] gi|49238732|emb|CAF27988.1| Cell cycle transcriptional regulator ctra [Bartonella henselae str. Houston-1] Length = 233 Score = 351 bits (900), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 166/227 (73%), Positives = 197/227 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDKA+ SIELMLKS NFNVY+TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKAMTQSIELMLKSANFNVYITDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+AKI TPV ILSGM++IEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL VNLDAKTVEV GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLIVNLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + NYI+TVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLEAVSSNINYIDTVWGRGYVLRDPVEE 227 >gi|319898471|ref|YP_004158564.1| cell cycle transcriptional regulator CtrA [Bartonella clarridgeiae 73] gi|319402435|emb|CBI75976.1| cell cycle transcriptional regulator CtrA [Bartonella clarridgeiae 73] Length = 233 Score = 351 bits (900), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 167/227 (73%), Positives = 195/227 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L DI G+ Sbjct: 1 MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDISGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+ KI TPV ILSGM IEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TGDL+VNLDAKTVEV GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIITGDLTVNLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + G NYI+TVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGINYIDTVWGRGYVLRDPVEE 227 >gi|83859270|ref|ZP_00952791.1| cell cycle transcriptional regulator CtrA [Oceanicaulis alexandrii HTCC2633] gi|83852717|gb|EAP90570.1| cell cycle transcriptional regulator CtrA [Oceanicaulis alexandrii HTCC2633] Length = 233 Score = 351 bits (900), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 163/225 (72%), Positives = 198/225 (88%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+A A IELMLKSE FN YVTDLGE+G++L K Y++D I+LDL L D+PGF Sbjct: 1 MRVLLIEDDRATAQGIELMLKSEGFNTYVTDLGEEGVDLGKLYDYDIILLDLNLPDMPGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TP+ ILSG + I++KVRGL SGADDY++KPF+KEEL+ARI A+VRRS+ Sbjct: 61 DVLKTLRVAKVDTPILILSGNADIDNKVRGLGSGADDYMTKPFHKEELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TGD++VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGDIAVNLDAKTVEVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICKLRKKL++A G ++IETVWGRGYVLR+ + Sbjct: 181 GMDEPELKIIDVFICKLRKKLASATSGDHHIETVWGRGYVLRDPS 225 >gi|319406806|emb|CBI80439.1| cell cycle transcriptional regulator CtrA [Bartonella sp. 1-1C] Length = 233 Score = 350 bits (899), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 166/227 (73%), Positives = 195/227 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+ KI TPV ILSGM IEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 EVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TGDL+VNLDAKTVE+ GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIITGDLTVNLDAKTVEIAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + G NYI+TVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGINYIDTVWGRGYVLRDPVEE 227 >gi|319408928|emb|CBI82585.1| cell cycle transcriptional regulator CtrA [Bartonella schoenbuchensis R1] Length = 233 Score = 350 bits (898), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 166/227 (73%), Positives = 197/227 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK + SIELMLKS NFNVY+TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKTTSQSIELMLKSGNFNVYITDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+AKI TPV ILSGMSSIEDKVRG GADDY++KPF+KEEL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLAKIKTPVLILSGMSSIEDKVRGFGFGADDYMTKPFHKEELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL+VNLD KTVE+ G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLTVNLDNKTVEIAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + G NYI+TVWGRGYVLR+ +++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGVNYIDTVWGRGYVLRDPSEE 227 >gi|163868751|ref|YP_001609968.1| cell cycle transcriptional regulator CtrA [Bartonella tribocorum CIP 105476] gi|161018415|emb|CAK01973.1| cell cycle transcriptional regulator CtrA [Bartonella tribocorum CIP 105476] Length = 233 Score = 350 bits (897), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 165/223 (73%), Positives = 196/223 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+A+ SIELMLKS NFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDRAVTQSIELMLKSANFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR+AKI TPV ILSGM++IEDKVRG SGADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLKTLRLAKIKTPVLILSGMNAIEDKVRGFGSGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL+VNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLTVNLDAKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL + NYI+TVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLEAVSSNVNYIDTVWGRGYVLRD 223 >gi|240850928|ref|YP_002972328.1| cell cycle transcriptional regulator CtrA [Bartonella grahamii as4aup] gi|240268051|gb|ACS51639.1| cell cycle transcriptional regulator CtrA [Bartonella grahamii as4aup] Length = 233 Score = 349 bits (895), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 165/227 (72%), Positives = 197/227 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+A+ SIELMLKS NFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDRAVTQSIELMLKSANFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+AKI TPV ILSGM++IEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL+VNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLTVNLDAKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + NYI+TVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLEAVSSSVNYIDTVWGRGYVLRDPVEE 227 >gi|319405236|emb|CBI78841.1| cell cycle transcriptional regulator CtrA [Bartonella sp. AR 15-3] Length = 233 Score = 348 bits (894), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 165/227 (72%), Positives = 194/227 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+ KI TPV ILSGM I+DKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLEKIKTPVLILSGMGDIKDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGDL++NLDAKTVEV GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIITTGDLTINLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + G NYI+TVWGRGYVLR+ K+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGVNYIDTVWGRGYVLRDPIKE 227 >gi|302382325|ref|YP_003818148.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192953|gb|ADL00525.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 237 Score = 348 bits (892), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 164/226 (72%), Positives = 194/226 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE FNVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDHATAQSIELMLKSEGFNVYTTDLGEEGIDLGKIYDYDMIMLDLNLPDMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV KI+TPV ILSG + IE KV+ GADDY++KPF+K+EL+AR A+VRRS+ Sbjct: 61 EVLRQLRVGKINTPVMILSGSTEIETKVKTFGGGADDYMTKPFHKDELIARTHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ++I TG+++VNLD KTVEV GHR+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQAIIHTGEIAVNLDGKTVEVHGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL+ AAGGK+YIETVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLATAAGGKHYIETVWGRGYVLRDPSE 226 >gi|319403800|emb|CBI77384.1| cell cycle transcriptional regulator CtrA [Bartonella rochalimae ATCC BAA-1498] Length = 233 Score = 348 bits (892), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 165/227 (72%), Positives = 194/227 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+ KI TPV ILSGM IEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 EVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TGDL+VNLDAKTVE+ G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIITGDLTVNLDAKTVEIAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL + G NYI+TVWGRGYVLR+ ++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGVNYIDTVWGRGYVLRDPVEE 227 >gi|121601947|ref|YP_989297.1| cell cycle transcriptional regulator CtrA [Bartonella bacilliformis KC583] gi|120614124|gb|ABM44725.1| cell cycle transcriptional regulator CtrA [Bartonella bacilliformis KC583] Length = 233 Score = 346 bits (887), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 165/229 (72%), Positives = 195/229 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK ++ SIELMLKS NFNVY TDLGE+G +L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKTMSQSIELMLKSGNFNVYTTDLGEEGTDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+AKI TPV ILSGM+SIEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLAKIKTPVLILSGMASIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL VNLD KTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIVTGDLIVNLDTKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL + + G +YI+TVWGRGYVLR+ + T Sbjct: 181 GMDEPELKIIDVFICKLRKKLDSVSSGISYIDTVWGRGYVLRDPIAENT 229 >gi|49474504|ref|YP_032546.1| cell cycle transcriptional regulator ctra [Bartonella quintana str. Toulouse] gi|49240008|emb|CAF26423.1| Cell cycle transcriptional regulator ctra [Bartonella quintana str. Toulouse] Length = 233 Score = 346 bits (887), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 164/223 (73%), Positives = 192/223 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDKA SIELMLKS NFNVY+TDLGE+G +L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDKATTQSIELMLKSANFNVYITDLGEEGADLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+AKI TPV ILSGM++IEDKVRG GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 DVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+IVTGDL+VNLDAKTVEV G +HLT KEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIVTGDLTVNLDAKTVEVAGRPVHLTSKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL + NYI+TVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLEEVSSSANYIDTVWGRGYVLRD 223 >gi|304321358|ref|YP_003855001.1| two-component transcriptional regulator [Parvularcula bermudensis HTCC2503] gi|303300260|gb|ADM09859.1| two-component transcriptional regulator [Parvularcula bermudensis HTCC2503] Length = 230 Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 163/227 (71%), Positives = 198/227 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKS+ FNVY TDLGE+G++L K Y++D I+LDL L D+ GF Sbjct: 1 MRVLLIEDDGATAQSIELMLKSDGFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMTGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LRVAK++TP+ IL+G+ E+KVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 DVLKSLRVAKVNTPILILTGLGDTENKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVITTGALTVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL+ A G++YIETVWGRGYVLR+ A++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAATDGEHYIETVWGRGYVLRDPAEE 227 >gi|254419082|ref|ZP_05032806.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196185259|gb|EDX80235.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 233 Score = 345 bits (885), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 165/226 (73%), Positives = 193/226 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE FNVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDHATAQSIELMLKSEGFNVYTTDLGEEGIDLGKIYDYDLILLDLNLPDMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV KI+TPV ILSG IE KV+ GADDY++KPF+K+EL+AR A+VRRS+ Sbjct: 61 EVLRQLRVGKINTPVMILSGSHEIETKVKTFGGGADDYLTKPFHKDELIARTHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ++I TG+++VNLDAKTVEV GHR+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQAIIHTGEIAVNLDAKTVEVNGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL+ AA GK+YIETVWGRGYVLR+ A+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLATAADGKHYIETVWGRGYVLRDPAE 226 >gi|154252621|ref|YP_001413445.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156571|gb|ABS63788.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 235 Score = 345 bits (885), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 162/226 (71%), Positives = 198/226 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKS+ FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSDGFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL++LRV KI+TP+ ILSG++ IE+KVRGL GADDY++KPF+K+ELVARI A+VRRS+ Sbjct: 61 EVLKSLRVGKITTPILILSGLAGIENKVRGLGFGADDYMTKPFHKDELVARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLD KTVEV+ +R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVINTGKLTVNLDTKTVEVENNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL+ + GG +YIETVWGRGYVLR+ A+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAASTGGDHYIETVWGRGYVLRDPAE 226 >gi|329890527|ref|ZP_08268870.1| cell cycle transcriptional regulator ctrA [Brevundimonas diminuta ATCC 11568] gi|328845828|gb|EGF95392.1| cell cycle transcriptional regulator ctrA [Brevundimonas diminuta ATCC 11568] Length = 233 Score = 344 bits (883), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 164/226 (72%), Positives = 193/226 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE FNVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDHATAQSIELMLKSEGFNVYTTDLGEEGIDLGKIYDYDLILLDLNLPDMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR KI+TPV ILSG I+ KV+ GADDY++KPF+K+EL+AR A+VRRS+ Sbjct: 61 EVLRQLRNGKINTPVMILSGSHEIDTKVKTFGGGADDYLTKPFHKDELIARTHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ++I TG+++VNLDAKTVEV GHR+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQAIIHTGEIAVNLDAKTVEVNGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DEPE+KIIDVFICKLRKKL+ AAGGK+YIETVWGRGYVLR+ A+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLATAAGGKHYIETVWGRGYVLRDPAE 226 >gi|114797249|ref|YP_759671.1| DNA-binding response regulator CtrA [Hyphomonas neptunium ATCC 15444] gi|114737423|gb|ABI75548.1| DNA-binding response regulator CtrA [Hyphomonas neptunium ATCC 15444] Length = 237 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 166/236 (70%), Positives = 195/236 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ALA SIELMLK+ FNVY+TDLGEDG+++ K YEFD I+LDL L DI GF Sbjct: 1 MRVLLIEDDRALARSIELMLKAAGFNVYLTDLGEDGVDIGKVYEFDMILLDLSLPDITGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR+++++TPV ILSG IE KV+ L GADDY++KPFNK+EL+ARI AIVRRS+ Sbjct: 61 EVLKQLRMSRVNTPVMILSGNPDIEAKVKTLGYGADDYLTKPFNKDELIARITAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA+S+I TGD+ VNLDAKTVEV G R+HLTGKEY M ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAESVIRTGDILVNLDAKTVEVDGERVHLTGKEYAMFELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKL A GG +YIETVWGRGYVLR+ + +E A Sbjct: 181 GLDEPELKIIDVFICKLRKKLQQATGGNHYIETVWGRGYVLRDPRPSQKSSEIEEA 236 >gi|114569220|ref|YP_755900.1| transcription regulator CtrA [Maricaulis maris MCS10] gi|114339682|gb|ABI64962.1| cell cycle transcriptional regulator CtrA / two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 231 Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 159/230 (69%), Positives = 199/230 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+A + SIELMLKSE FN+Y TDLGE+G++L K Y++D I+LDL L D+PGF Sbjct: 1 MRVLLIEDDRATSQSIELMLKSEGFNIYTTDLGEEGVDLGKLYDYDIILLDLNLPDMPGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TP+ IL+G + I++KVRGL GADDY++KPF+K+E+VARI AIVRRS+ Sbjct: 61 DVLKTLRVAKVDTPILILTGNADIDNKVRGLGCGADDYMTKPFHKDEMVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG + VNLDAKTVEV+G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGSIGVNLDAKTVEVEGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKL+ A G+++IETVWGRGYVLR+ +++ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAATHGEHHIETVWGRGYVLRDPVEEKAS 230 >gi|312113706|ref|YP_004011302.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311218835|gb|ADP70203.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 231 Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 165/230 (71%), Positives = 195/230 (84%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELML SE FNV+ TDLGE+G++L K Y++D I+LDLGL DI G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLLSEGFNVFQTDLGEEGVDLGKIYDYDIILLDLGLPDISGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRALRV+KI TP+ ILSG ++DKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRALRVSKIKTPILILSGSGGVDDKVRGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG L VNLD KTVEV G+R+HLT KEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIQTGSLIVNLDTKTVEVDGNRVHLTSKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKL+ A G++YIETVWGRGYVLR+ +++ Sbjct: 181 GIDEPELKIIDVFICKLRKKLATANTGQHYIETVWGRGYVLRDPKEEQAA 230 >gi|240142372|ref|YP_002966882.1| two component transcriptional regulator, winged helix family [Methylobacterium extorquens AM1] gi|240012316|gb|ACS43541.1| two component transcriptional regulator, winged helix family [Methylobacterium extorquens AM1] Length = 231 Score = 342 bits (878), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 160/225 (71%), Positives = 193/225 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR LLIEDD +A SIELML+SE Y TD GE+GI+L K Y++D I+LDL L D+ G+ Sbjct: 1 MRALLIEDDSNVAQSIELMLRSETIVPYTTDTGEEGIDLAKIYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR+LRVAK+ TPV ILSGM IEDKV+GL +GADDY+ KPF+K+EL+ARI AIVRRS+ Sbjct: 61 DVLRSLRVAKVGTPVLILSGMGGIEDKVKGLGNGADDYVVKPFHKDELIARINAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS++ GDL+VNLDAKTVEV GH+++LTGKEYQM+ELL LR+ TTLTKEMFLNHLY Sbjct: 121 GHAQSVVTVGDLTVNLDAKTVEVSGHKVYLTGKEYQMLELLVLRQGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICKLRKKL+NA+GG+N+IETVWGRGYV+R A Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASGGQNWIETVWGRGYVVRNPA 225 >gi|197104317|ref|YP_002129694.1| cell cycle transcriptional regulator CtrA [Phenylobacterium zucineum HLK1] gi|196477737|gb|ACG77265.1| cell cycle transcriptional regulator CtrA [Phenylobacterium zucineum HLK1] Length = 231 Score = 342 bits (876), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 163/223 (73%), Positives = 192/223 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LRV KI+TP+ ILSG + IE KV+ GADDY++KPF+K+ELVARI A+VRRS+ Sbjct: 61 DVLRTLRVGKINTPIMILSGTAEIETKVKTFTGGADDYMTKPFHKDELVARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGD++VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIKTGDITVNLDAKTVEVNGIRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ AA GK++IETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAAADGKHHIETVWGRGYVLRD 223 >gi|329849938|ref|ZP_08264784.1| cell cycle transcriptional regulator ctrA [Asticcacaulis biprosthecum C19] gi|328841849|gb|EGF91419.1| cell cycle transcriptional regulator ctrA [Asticcacaulis biprosthecum C19] Length = 233 Score = 341 bits (874), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 163/223 (73%), Positives = 192/223 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLSLPDMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV K++TPV ILSG S I+ KV+ L GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 EVLRQLRVGKVNTPVMILSGTSEIDTKVKTLGGGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEY+M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIRTGDIVVNLDAKTVEVSGNRVHLTGKEYEMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ AA G +YIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAVAADGNHYIETVWGRGYVLRD 223 >gi|315497642|ref|YP_004086446.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315415654|gb|ADU12295.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 233 Score = 340 bits (871), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 163/223 (73%), Positives = 191/223 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLSLPDMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV K++TPV ILSG S IE KV+ L GADDY++KPF+K+EL+ARI A+VRRS+ Sbjct: 61 EVLRQLRVGKVNTPVMILSGTSEIETKVKTLGGGADDYMTKPFHKDELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEY+M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIKTGDIIVNLDAKTVEVAGNRVHLTGKEYEMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ A G +YIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAVANDGNSYIETVWGRGYVLRD 223 >gi|16127265|ref|NP_421829.1| cell cycle transcriptional regulator CtrA [Caulobacter crescentus CB15] gi|221236066|ref|YP_002518503.1| cell cycle response regulator CtrA [Caulobacter crescentus NA1000] gi|295690880|ref|YP_003594573.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|239977105|sp|B8H358|CTRA_CAUCN RecName: Full=Cell cycle transcriptional regulator CtrA; AltName: Full=Response regulator SokA gi|239977106|sp|P0CAW8|CTRA_CAUCR RecName: Full=Cell cycle transcriptional regulator CtrA; AltName: Full=Response regulator SokA gi|1151107|gb|AAA93080.1| cell cycle transcriptional regulator [Caulobacter crescentus CB15] gi|13424677|gb|AAK24997.1| cell cycle transcriptional regulator CtrA [Caulobacter crescentus CB15] gi|220965239|gb|ACL96595.1| cell cycle response regulator ctrA [Caulobacter crescentus NA1000] gi|295432783|gb|ADG11955.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 231 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 160/223 (71%), Positives = 193/223 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A +IELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LRVAKI+TP+ ILSG S I+ KV+ GADDY++KPF+K+E++ARI A+VRRS+ Sbjct: 61 DVLRTLRVAKINTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIKTGDIVVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ +A GK++IETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAASAHGKHHIETVWGRGYVLRD 223 >gi|167644991|ref|YP_001682654.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167347421|gb|ABZ70156.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 231 Score = 338 bits (867), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 158/223 (70%), Positives = 193/223 (86%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A +IELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LRVAK++TP+ ILSG + I+ KV+ GADDY++KPF+K+E++ARI A+VRRS+ Sbjct: 61 DVLRTLRVAKVNTPIMILSGSAEIDTKVKTFSGGADDYMTKPFHKDEMIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIKTGDIIVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ +A GK++IETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAASAQGKHHIETVWGRGYVLRD 223 >gi|254476592|ref|ZP_05089978.1| two component transcriptional regulator, winged helix family [Ruegeria sp. R11] gi|214030835|gb|EEB71670.1| two component transcriptional regulator, winged helix family [Ruegeria sp. R11] Length = 239 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 161/228 (70%), Positives = 189/228 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRMARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKLS A GG+NYIETVWGRGYVLR+ D+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGENYIETVWGRGYVLRDPQDDQ 228 >gi|254294576|ref|YP_003060599.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043107|gb|ACT59902.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 233 Score = 335 bits (860), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 160/225 (71%), Positives = 192/225 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A+A SI+LMLK+ FN+Y+TDLGE+G++L K YE+D IILDL L DI G+ Sbjct: 1 MRVLLIEDDDAVARSIDLMLKAAGFNIYITDLGEEGVDLGKVYEYDLIILDLSLPDISGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR+++I+TPV ILSG IE KV+ L GADDY++KPFNK+EL+ARI AIVRRS+ Sbjct: 61 EVLKQLRMSRINTPVLILSGNPDIEAKVKTLGYGADDYLTKPFNKDELIARITAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA+S+I TGD+ VNLDAKTVEV+ R+HLTGKEYQM ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAESVIRTGDILVNLDAKTVEVKNQRVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICKLRKKL A GG ++IETVWGRGYVLR+ + Sbjct: 181 GMDEPELKIIDVFICKLRKKLQKATGGDHFIETVWGRGYVLRDPS 225 >gi|254466033|ref|ZP_05079444.1| two component transcriptional regulator, winged helix family [Rhodobacterales bacterium Y4I] gi|206686941|gb|EDZ47423.1| two component transcriptional regulator, winged helix family [Rhodobacterales bacterium Y4I] Length = 239 Score = 335 bits (860), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 159/227 (70%), Positives = 189/227 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG ++K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRMSRIETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVE G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGKISVNLDAKTVEADGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+ +D Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQED 227 >gi|84500835|ref|ZP_00999070.1| DNA-binding response regulator CtrA [Oceanicola batsensis HTCC2597] gi|84390902|gb|EAQ03320.1| DNA-binding response regulator CtrA [Oceanicola batsensis HTCC2597] Length = 238 Score = 335 bits (859), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 159/228 (69%), Positives = 189/228 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRVLLVEDDPTTSKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV++I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRVSRIETPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIRTGKVSVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+ +E Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQPEE 228 >gi|126737637|ref|ZP_01753367.1| DNA-binding response regulator CtrA [Roseobacter sp. SK209-2-6] gi|126721030|gb|EBA17734.1| DNA-binding response regulator CtrA [Roseobacter sp. SK209-2-6] Length = 239 Score = 335 bits (858), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 159/228 (69%), Positives = 189/228 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG ++K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRMARIETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIINTGKIAVNLDAKTVEVEGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+ D+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQDDQ 228 >gi|56696561|ref|YP_166918.1| DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3] gi|56678298|gb|AAV94964.1| DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3] Length = 238 Score = 334 bits (856), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 158/227 (69%), Positives = 189/227 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LD+ L D+ G Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDINLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG+ E K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRMSRIETPILILSGVDDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKISVNLDAKTVEVEGQPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+ D Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQAD 227 >gi|163736310|ref|ZP_02143729.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] gi|163741161|ref|ZP_02148553.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis 2.10] gi|161385514|gb|EDQ09891.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis 2.10] gi|161390180|gb|EDQ14530.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] Length = 239 Score = 333 bits (855), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 160/228 (70%), Positives = 187/228 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRMARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+ D+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQDDQ 228 >gi|99081240|ref|YP_613394.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99037520|gb|ABF64132.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 239 Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 158/227 (69%), Positives = 189/227 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLSRIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTV+V+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGKISVNLDAKTVDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKLS A G+NYIETVWGRGYVLR+ +D Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATDGENYIETVWGRGYVLRDPQED 227 >gi|254512408|ref|ZP_05124475.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium KLH11] gi|221536119|gb|EEE39107.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium KLH11] Length = 238 Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 158/231 (68%), Positives = 188/231 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A++ TP+ ILSG E K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRIARVETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIHTGQVAVNLDAKTVEVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+ + E Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQSNGMSE 231 >gi|260433792|ref|ZP_05787763.1| cell cycle transcriptional regulator CtrA [Silicibacter lacuscaerulensis ITI-1157] gi|260417620|gb|EEX10879.1| cell cycle transcriptional regulator CtrA [Silicibacter lacuscaerulensis ITI-1157] Length = 238 Score = 333 bits (853), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 158/227 (69%), Positives = 187/227 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A++ TP+ ILSG E K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRIARVETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIRTGRIAVNLDAKTVEVDGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+ D Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQGD 227 >gi|259416014|ref|ZP_05739934.1| cell cycle transcriptional regulator CtrA [Silicibacter sp. TrichCH4B] gi|259347453|gb|EEW59230.1| cell cycle transcriptional regulator CtrA [Silicibacter sp. TrichCH4B] Length = 239 Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 158/230 (68%), Positives = 188/230 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLSRIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTV+V+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGKISVNLDAKTVDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G DEPE+KIIDVFICKLRKKLS A G NYIETVWGRGYVLR+ +D Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATDGDNYIETVWGRGYVLRDPQEDHAT 230 >gi|86138408|ref|ZP_01056982.1| DNA-binding response regulator CtrA [Roseobacter sp. MED193] gi|85824933|gb|EAQ45134.1| DNA-binding response regulator CtrA [Roseobacter sp. MED193] Length = 239 Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 158/228 (69%), Positives = 188/228 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG ++K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRMARIETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTVEV +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGKIAVNLDAKTVEVDSKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+ +D+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQEDQ 228 >gi|326386598|ref|ZP_08208220.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208913|gb|EGD59708.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 233 Score = 332 bits (851), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 157/223 (70%), Positives = 191/223 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLSAEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TPV ILSG+S ++ KVR GADDY++KPF++EEL+ARI A+VRRS+ Sbjct: 61 DVLKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG LSVNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLSVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL++A GG+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAHACGGENYIETVWGRGYVLRD 223 >gi|87198328|ref|YP_495585.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134009|gb|ABD24751.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 233 Score = 332 bits (851), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 157/223 (70%), Positives = 191/223 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TPV ILSG+S ++ KVR GADDY++KPF++EEL+ARI A+VRRS+ Sbjct: 61 DVLKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG LSVNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLSVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL++A GG+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAHACGGENYIETVWGRGYVLRD 223 >gi|85375673|ref|YP_459735.1| DNA-binding response regulator CtrA [Erythrobacter litoralis HTCC2594] gi|84788756|gb|ABC64938.1| DNA-binding response regulator CtrA [Erythrobacter litoralis HTCC2594] Length = 231 Score = 332 bits (850), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 159/231 (68%), Positives = 194/231 (83%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TPV ILSG++ ++ K+R GADDY++KPF++EELVARI A+VRRS+ Sbjct: 61 DVLKKLRVAKVQTPVLILSGIAEMDSKIRSFGFGADDYVTKPFHREELVARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G DEPE+KIIDVFICKLRKKLS+A GG+NYIETVWGRGYVLR+ DE E Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACGGENYIETVWGRGYVLRD--PDEQSE 229 >gi|146277940|ref|YP_001168099.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145556181|gb|ABP70794.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17025] Length = 237 Score = 330 bits (847), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 158/229 (68%), Positives = 188/229 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGEDGI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A++ TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARVDTPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG + VNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ ET Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATGGESYIETVWGRGYVLRDPVTTET 229 >gi|77463175|ref|YP_352679.1| two component transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462047|ref|YP_001043161.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332558049|ref|ZP_08412371.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77387593|gb|ABA78778.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides 2.4.1] gi|126103711|gb|ABN76389.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] gi|332275761|gb|EGJ21076.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 237 Score = 330 bits (847), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 158/229 (68%), Positives = 188/229 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGEDGI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A++ TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARVDTPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG + VNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ ET Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATGGESYIETVWGRGYVLRDPVTTET 229 >gi|149185450|ref|ZP_01863766.1| DNA-binding response regulator CtrA [Erythrobacter sp. SD-21] gi|148830670|gb|EDL49105.1| DNA-binding response regulator CtrA [Erythrobacter sp. SD-21] Length = 231 Score = 330 bits (846), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 155/223 (69%), Positives = 191/223 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TPV ILSG++ ++ K+R GADDY++KPF++EEL+ARI A+VRRS+ Sbjct: 61 DVLKKLRVAKVQTPVLILSGVAEMDSKIRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS+A GG+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACGGENYIETVWGRGYVLRD 223 >gi|85709585|ref|ZP_01040650.1| DNA-binding response regulator CtrA [Erythrobacter sp. NAP1] gi|85688295|gb|EAQ28299.1| DNA-binding response regulator CtrA [Erythrobacter sp. NAP1] Length = 231 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 157/229 (68%), Positives = 193/229 (84%), Gaps = 1/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TPV ILSG++ ++ K+R GADDY++KPF++EELVARI A+VRRS+ Sbjct: 61 DVLKKLRVAKVQTPVLILSGIAEMDSKIRSFGFGADDYVTKPFHREELVARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDSARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G DEPE+KIIDVFICKLRKKLS+A GG+NYIETVWGRGYVLR + +DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACGGENYIETVWGRGYVLR-DPQDEA 228 >gi|260576790|ref|ZP_05844775.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] gi|259021042|gb|EEW24353.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] Length = 237 Score = 328 bits (841), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 155/225 (68%), Positives = 187/225 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGEDGI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A++ TP+ IL+G E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARVETPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG ++VNLDAKTV+V G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIRTGKVAVNLDAKTVDVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ A Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATGGQSYIETVWGRGYVLRDPA 225 >gi|94497501|ref|ZP_01304071.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] gi|94423132|gb|EAT08163.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] Length = 235 Score = 328 bits (841), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 156/223 (69%), Positives = 188/223 (84%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLTTEGFNVYTTDLGEEGLDLGKLYDYDIICLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR AK+ TPV ILSG+S ++ KVR GADDY++KPF++EEL+ARI A+VRRS+ Sbjct: 61 DVLKKLRAAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG LSVNLDAKTVEV G+R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLSVNLDAKTVEVDGNRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ A GG NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLALACGGDNYIETVWGRGYVLRD 223 >gi|296281989|ref|ZP_06859987.1| DNA-binding response regulator CtrA [Citromicrobium bathyomarinum JL354] Length = 231 Score = 328 bits (840), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 156/223 (69%), Positives = 190/223 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ + A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPSTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVAK+ TPV ILSG+S ++ KVR GADDY++KPF++EELVARI A+VRRS+ Sbjct: 61 DVLKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELVARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDSARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS+A G+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACDGENYIETVWGRGYVLRD 223 >gi|148557747|ref|YP_001265329.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148502937|gb|ABQ71191.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 231 Score = 327 bits (839), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 159/223 (71%), Positives = 186/223 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A SIELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ G+ Sbjct: 1 MRVLLIEDDPTTAKSIELMLGAEGFNVYTTDLGEEGLDLGKLYDYDIIALDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR AK+ TPV ILSG+ ++ KVR L GADDY++KPF++EELVARI AIVRRS+ Sbjct: 61 DVLKKLRGAKVQTPVMILSGIGEMDSKVRALGFGADDYVTKPFHREELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS A G NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSLACSGDNYIETVWGRGYVLRD 223 >gi|332187122|ref|ZP_08388862.1| response regulator [Sphingomonas sp. S17] gi|332012822|gb|EGI54887.1| response regulator [Sphingomonas sp. S17] Length = 235 Score = 327 bits (838), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 156/223 (69%), Positives = 190/223 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML SE FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLGSEGFNVYTTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LRVA++STPV ILSG++ ++ KVR GADDY++KPF++EEL+ARI A+VRRS+ Sbjct: 61 DVLKRLRVARVSTPVLILSGINEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV+ R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIRTGKLAVNLDAKTVEVENARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS A G+NYIETVWGRGYVLRE Sbjct: 181 GMDEPELKIIDVFICKLRKKLSLACDGENYIETVWGRGYVLRE 223 >gi|89054996|ref|YP_510447.1| two component transcriptional regulator [Jannaschia sp. CCS1] gi|88864545|gb|ABD55422.1| two component transcriptional regulator, winged helix family [Jannaschia sp. CCS1] Length = 238 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 185/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIE+MLK N NVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLVEDDPTTSRSIEMMLKHANLNVYSTDLGEEGMDLAKLYDYDIILLDLNLPDVSGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR A++ TP+ ILSG+ E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRHLRTARVDTPILILSGLDDPENKLKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG +SVNLDAKTV+V G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIDTGRISVNLDAKTVDVAGTPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS A GG YIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGGDTYIETVWGRGYVLRD 223 >gi|260427756|ref|ZP_05781735.1| cell cycle transcriptional regulator CtrA [Citreicella sp. SE45] gi|260422248|gb|EEX15499.1| cell cycle transcriptional regulator CtrA [Citreicella sp. SE45] Length = 238 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 155/223 (69%), Positives = 186/223 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+GI+L + Y++D I+LDL L DI G Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLARLYDYDLILLDLNLPDINGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I+TP+ ILSG E+K++G GADDY++KPF+++ELVARI AI+RRS+ Sbjct: 61 EVLRQLRLSRINTPILILSGADDTENKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS A G +NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGDENYIETVWGRGYVLRD 223 >gi|294677200|ref|YP_003577815.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus SB 1003] gi|6467529|gb|AAF13177.1|AF181078_1 response regulator homolog [Rhodobacter capsulatus] gi|294476020|gb|ADE85408.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus SB 1003] Length = 237 Score = 325 bits (833), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 185/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEEGIDLAKLYDYDLILLDLNLPDMNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A++ TP+ IL+G E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARVDTPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIRTGKISVNLDAKTVEVGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ GG+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEVTGGENYIETVWGRGYVLRD 223 >gi|294011554|ref|YP_003545014.1| OmpR-family two-component system response regulator [Sphingobium japonicum UT26S] gi|307294329|ref|ZP_07574173.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|292674884|dbj|BAI96402.1| OmpR-family two-component system response regulator [Sphingobium japonicum UT26S] gi|306880480|gb|EFN11697.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 235 Score = 325 bits (832), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 156/232 (67%), Positives = 192/232 (82%), Gaps = 2/232 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +IELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIELMLTTEGFNVYTTDLGEEGLDLGKLYDYDIICLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR AK+ TPV ILSG++ ++ KVR GADDY++KPF++EEL+ARI A+VRRS+ Sbjct: 61 DVLKKLRAAKVQTPVLILSGVAEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLDAKTVEV G+R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDGNRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 G DEPE+KIIDVFICKLRKKL+ A G+NYIETVWGRGYVLR+ DE E+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLALACNGENYIETVWGRGYVLRD--PDEAEEF 230 >gi|159044057|ref|YP_001532851.1| cell cycle transcriptional regulator ctrA [Dinoroseobacter shibae DFL 12] gi|157911817|gb|ABV93250.1| cell cycle transcriptional regulator ctrA [Dinoroseobacter shibae DFL 12] Length = 237 Score = 324 bits (831), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 186/223 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD A SIELML N NVY T +GE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRILIIEDDPTTAKSIELMLTHANLNVYCTAMGEEGIDLAKLYDYDLILLDLGLPDMTGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R+A+I TP+ ILSG E K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQIRLARIETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG++ VNLDAKTVEV G ++HLTGKEYQ++ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIKTGEILVNLDAKTVEVDGMQVHLTGKEYQILELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS A GG+N+IETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSQATGGENHIETVWGRGYVLRD 223 >gi|126736445|ref|ZP_01752186.1| DNA-binding response regulator CtrA [Roseobacter sp. CCS2] gi|126713983|gb|EBA10853.1| DNA-binding response regulator CtrA [Roseobacter sp. CCS2] Length = 237 Score = 324 bits (831), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 153/223 (68%), Positives = 185/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N NVY TD+GE+GI+L K Y++D I+LD+ L D+ G Sbjct: 1 MRVLLVEDDPTTSKSIELMLTHANLNVYATDMGEEGIDLAKLYDYDLILLDINLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG E K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLSRIDTPILILSGDDGTESKLKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG ++VNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIKTGQIAVNLDAKTVEVEGSTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS A G+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATMGENYIETVWGRGYVLRD 223 >gi|126729668|ref|ZP_01745481.1| DNA-binding response regulator CtrA [Sagittula stellata E-37] gi|126709787|gb|EBA08840.1| DNA-binding response regulator CtrA [Sagittula stellata E-37] Length = 238 Score = 324 bits (830), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 157/230 (68%), Positives = 187/230 (81%), Gaps = 2/230 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TD+GE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSKSIELMLSHANLNVYSTDMGEEGIDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRVA+I TP+ IL+G + K++G GADDY++KPF+++ELVARI AI+RRS+ Sbjct: 61 EVLRQLRVARIDTPILILTGEDDTQSKIKGFGFGADDYMTKPFHRDELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKVSVNLDAKTVEVTGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDE 228 G DEPE+KIIDVFICKLRKKLS A G NYIETVWGRGYVLR E ++DE Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGDDNYIETVWGRGYVLRDPEPSQDE 230 >gi|254439177|ref|ZP_05052671.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] gi|198254623|gb|EDY78937.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] Length = 239 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 184/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + A SIELML N NVY TDLGE+GI+L K Y++D I+LD+ L D+ G Sbjct: 1 MRVLLVEDDPSTAKSIELMLSHANLNVYTTDLGEEGIDLAKLYDYDLILLDINLPDLNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG E K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLSRIETPILILSGEDGTESKLKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG ++VNLDAKTVEV +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIKTGVIAVNLDAKTVEVDSSPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS A GG N+IETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGGDNHIETVWGRGYVLRD 223 >gi|84516173|ref|ZP_01003533.1| DNA-binding response regulator CtrA [Loktanella vestfoldensis SKA53] gi|84509869|gb|EAQ06326.1| DNA-binding response regulator CtrA [Loktanella vestfoldensis SKA53] Length = 237 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 155/223 (69%), Positives = 184/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD A SIELML N NVY TDLGE+GI+L K Y++D I+LDL L DI G Sbjct: 1 MRVLLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLNLPDINGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ IL+G E K++ GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLSRIDTPILILTGDDGTESKLKSFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG ++VNLDAKTVEV G+ +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIRTGQIAVNLDAKTVEVAGNTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS AA G+N IETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEAADGENNIETVWGRGYVLRD 223 >gi|85702768|ref|ZP_01033872.1| DNA-binding response regulator CtrA [Roseovarius sp. 217] gi|85671696|gb|EAQ26553.1| DNA-binding response regulator CtrA [Roseovarius sp. 217] Length = 238 Score = 322 bits (826), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 152/223 (68%), Positives = 184/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRVLLVEDDPTTSRSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+++TP+ ILSG + K+RG GADDY++KPF+++ELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARVATPILILSGAGDTDSKIRGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTV+ G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGMVNVNLDAKTVDAGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS A G NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATDGANYIETVWGRGYVLRD 223 >gi|84686906|ref|ZP_01014790.1| two component transcriptional regulator, winged helix family protein [Maritimibacter alkaliphilus HTCC2654] gi|84665103|gb|EAQ11583.1| two component transcriptional regulator, winged helix family protein [Rhodobacterales bacterium HTCC2654] Length = 237 Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 153/223 (68%), Positives = 185/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+G++L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSRSIELMLTHANLNVYSTDLGEEGVDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E+K+RG GADDY++KPF+++ELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARIETPILILSGNDDTENKLRGFGFGADDYMTKPFHRDELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAK+VEV G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIQTGRVAVNLDAKSVEVDGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ A G+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATEGENYIETVWGRGYVLRD 223 >gi|255261349|ref|ZP_05340691.1| cell cycle transcriptional regulator CtrA [Thalassiobium sp. R2A62] gi|255103684|gb|EET46358.1| cell cycle transcriptional regulator CtrA [Thalassiobium sp. R2A62] Length = 238 Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 185/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N VY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRVLLVEDDPRTSKSIELMLSHANLIVYATDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARIETPILILSGSDDTENKLKGFGYGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG + VNLDAKTVEV G +HLTGKEYQMIELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIKTGRVMVNLDAKTVEVGGKTVHLTGKEYQMIELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ A GG+++IETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLATATGGESHIETVWGRGYVLRD 223 >gi|126726434|ref|ZP_01742275.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium HTCC2150] gi|126704297|gb|EBA03389.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium HTCC2150] Length = 237 Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 154/236 (65%), Positives = 186/236 (78%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIE+ML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLVEDDPTTSRSIEMMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+AK+ TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLAKVETPILILSGSDDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTVE +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIHTGGIAVNLDAKTVEAHNKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 G DEPE+KIIDVFICKLRKKLS A G NYIETVWGRGYVLR+ + + L A Sbjct: 181 GMDEPELKIIDVFICKLRKKLSLATDGDNYIETVWGRGYVLRDPVAADGPDVLAQA 236 >gi|103486056|ref|YP_615617.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976133|gb|ABF52284.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 235 Score = 321 bits (822), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 152/223 (68%), Positives = 186/223 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A +I+ ML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKAIDTMLTTEGFNVYTTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR AK+ TPV ILSG+S ++ KVR GADDY++KPF+++ELVARI A+VRRS+ Sbjct: 61 DVLKKLRTAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHRDELVARIHAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLD KTVEV R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIKTGKLAVNLDTKTVEVDSIRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ A GG NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLALACGGDNYIETVWGRGYVLRD 223 >gi|221639032|ref|YP_002525294.1| winged helix family two component transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221159813|gb|ACM00793.1| Two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] Length = 232 Score = 320 bits (821), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 153/224 (68%), Positives = 183/224 (81%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 +EDD + SIELML N NVY TDLGEDGI+L K Y++D I+LDL L D+ G EVLR Sbjct: 1 MEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGHEVLRQ 60 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 LR+A++ TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+GHAQS Sbjct: 61 LRLARVDTPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSKGHAQS 120 Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185 +I TG + VNLDAKTVEV+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G DEP Sbjct: 121 VIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP 180 Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 E+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ ET Sbjct: 181 ELKIIDVFICKLRKKLAEATGGESYIETVWGRGYVLRDPVTTET 224 >gi|149203840|ref|ZP_01880809.1| two component transcriptional regulator, winged helix family protein [Roseovarius sp. TM1035] gi|149142957|gb|EDM30999.1| two component transcriptional regulator, winged helix family protein [Roseovarius sp. TM1035] Length = 238 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 152/223 (68%), Positives = 183/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRVLLVEDDPTTSKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I+TP+ ILSG E K++G GADDY++KPF+++ELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARIATPILILSGADDTESKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTV+ G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGKINVNLDAKTVDAGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL A G NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLCEATDGVNYIETVWGRGYVLRD 223 >gi|310816018|ref|YP_003963982.1| cell cycle transcriptional regulator CtrA [Ketogulonicigenium vulgare Y25] gi|308754753|gb|ADO42682.1| cell cycle transcriptional regulator CtrA [Ketogulonicigenium vulgare Y25] Length = 238 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 151/223 (67%), Positives = 183/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIE+ML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSRSIEMMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMTGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+A++ TP+ ILSG + K++G GADDY++KPF +EELVARI AI+RRS+ Sbjct: 61 DVLRQLRLARVDTPILILSGSDDTDSKLKGFGFGADDYMTKPFQREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG ++VNLD KTV+V+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVINTGRIAVNLDTKTVDVEGAPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS A GG N+IETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSVATGGDNHIETVWGRGYVLRD 223 >gi|89069529|ref|ZP_01156873.1| DNA-binding response regulator CtrA [Oceanicola granulosus HTCC2516] gi|89044864|gb|EAR50954.1| DNA-binding response regulator CtrA [Oceanicola granulosus HTCC2516] Length = 238 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 153/223 (68%), Positives = 181/223 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLVEDDPTTSRSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ +L+G E K+R GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARIETPILVLTGDDGTESKLRSFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG + VNLDAKTVEV G +HLTGKEYQM ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSIIKTGRILVNLDAKTVEVDGVPVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ A G+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLATATDGENYIETVWGRGYVLRD 223 >gi|209965047|ref|YP_002297962.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum SW] gi|209958513|gb|ACI99149.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum SW] Length = 234 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 151/223 (67%), Positives = 189/223 (84%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD ++A SIELML SE + V T+LGEDG+E+ K Y++D IILDL L DI G+ Sbjct: 1 MRVLLVEDDPSMAKSIELMLNSEGYIVDSTELGEDGLEIGKLYDYDIIILDLMLPDIDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR A+++TP+ ILSG+S ++ K++GL GADDY++KPF+K ELVAR++AIVRRS+ Sbjct: 61 EVLRRLRSARVTTPILILSGLSELDHKIKGLGVGADDYLTKPFDKRELVARLQAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S+I TG L+VNLDA+TVEV G +HLTGKEY ++ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSDSIIRTGKLTVNLDARTVEVDGQPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVF+CKLRKKL+ A G+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFVCKLRKKLTTATKGENYIETVWGRGYVLRD 223 >gi|260754024|ref|YP_003226917.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553387|gb|ACV76333.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 234 Score = 314 bits (804), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 146/223 (65%), Positives = 185/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A SIELML + FNVY TDLGE+GI+L K Y++D I LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKSIELMLTKKRFNVYTTDLGEEGIDLGKLYDYDIICLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR A++ TP+ +LSG++ +E KVR L GADDY++KPF++EEL+ARI+A+VRRS+ Sbjct: 61 EVLKTLRTAQVKTPIIVLSGIAEMESKVRALGFGADDYLTKPFHQEELIARIQAVVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLD+KTVE+ +HLTGKEY ++ELLSLRK TT+TKEMFLNHLY Sbjct: 121 GHSQSIIKTGHLTVNLDSKTVEIDNKPVHLTGKEYAILELLSLRKGTTITKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVF+CKLRKKL+ A +NYIETVWGRGY+LRE Sbjct: 181 GMDEPELKIIDVFVCKLRKKLNKAYPDENYIETVWGRGYILRE 223 >gi|83951898|ref|ZP_00960630.1| DNA-binding response regulator CtrA [Roseovarius nubinhibens ISM] gi|83836904|gb|EAP76201.1| DNA-binding response regulator CtrA [Roseovarius nubinhibens ISM] Length = 233 Score = 313 bits (803), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 145/218 (66%), Positives = 181/218 (83%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 +EDD + SIE+ML N NVY T LGE+G++L + Y++D I+LDLGL D+ G EVLR Sbjct: 1 MEDDPTTSKSIEMMLSHANLNVYTTSLGEEGVDLARLYDYDLILLDLGLPDMTGHEVLRQ 60 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 LR+A+I TP+ ILSG ++K++G GADDY++KPF+++ELVARI AI+RRS+GH+QS Sbjct: 61 LRLARIETPILILSGSDDTDNKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSKGHSQS 120 Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185 +I TG+++VNLDAKTV+V G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G DEP Sbjct: 121 VIRTGEINVNLDAKTVDVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP 180 Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E+KIIDVFICKLRKKLS A GG N+IETVWGRGYVLR+ Sbjct: 181 ELKIIDVFICKLRKKLSQATGGDNHIETVWGRGYVLRD 218 >gi|56552283|ref|YP_163122.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761659|ref|ZP_04759746.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543857|gb|AAV90011.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gi|241373967|gb|EER63500.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 234 Score = 313 bits (803), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 146/223 (65%), Positives = 185/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ A SIELML + FNVY TDLGE+GI+L K Y++D I LDL L D+ G+ Sbjct: 1 MRVLLIEDEPTTAKSIELMLTKKRFNVYTTDLGEEGIDLGKLYDYDIICLDLNLPDMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR A++ TP+ +LSG++ +E KVR L GADDY++KPF++EEL+ARI+A+VRRS+ Sbjct: 61 EVLKTLRTAQVKTPIIVLSGIAEMESKVRALGFGADDYLTKPFHQEELIARIQAVVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG L+VNLD+KTVE+ +HLTGKEY ++ELLSLRK TT+TKEMFLNHLY Sbjct: 121 GHSQSIIKTGRLTVNLDSKTVEIDNKPVHLTGKEYAILELLSLRKGTTITKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVF+CKLRKKL+ A +NYIETVWGRGY+LRE Sbjct: 181 GMDEPELKIIDVFVCKLRKKLNKAYPDENYIETVWGRGYILRE 223 >gi|288962372|ref|YP_003452667.1| two-component response regulator [Azospirillum sp. B510] gi|288914638|dbj|BAI76123.1| two-component response regulator [Azospirillum sp. B510] Length = 246 Score = 313 bits (803), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 149/223 (66%), Positives = 187/223 (83%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD ++A SIELML +E F V TDLGEDG+E+ K Y++D IILDL L DI G+ Sbjct: 1 MRVLLVEDDSSVAKSIELMLNTEGFIVDSTDLGEDGLEIGKLYDYDIIILDLMLPDIDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR A+++TP+ ILSG++ +++K++GL GADDY++KPF+K EL+ARI+AIVRRS+ Sbjct: 61 EVLRRLRAARVTTPILILSGLTEMDNKIKGLGFGADDYLTKPFDKRELIARIQAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S+I TG L+VNLD +TVEV +HLTGKEY ++ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSDSIIRTGRLTVNLDTRTVEVDQSPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVF+CKLRKKL+ A G NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFVCKLRKKLAAATQGDNYIETVWGRGYVLRD 223 >gi|254459879|ref|ZP_05073295.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium HTCC2083] gi|206676468|gb|EDZ40955.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium HTCC2083] Length = 238 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 145/223 (65%), Positives = 180/223 (80%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SI++ML N NVY T GE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLVEDDPTTSKSIDMMLTHANLNVYTTSFGEEGIDLAKLYDYDLILLDLNLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E K++G GADDY++KPF+++EL+ARI AI+RRS+ Sbjct: 61 EVLRQLRLARIETPILILSGSDDTESKIKGFGFGADDYLTKPFHRDELIARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTVEV+ +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSIIHTGKIAVNLDAKTVEVENATVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEP++KIIDVFICKLRKKL A G +YIETVWGRGYVLR+ Sbjct: 181 GMDEPKLKIIDVFICKLRKKLCEATGEDSYIETVWGRGYVLRD 223 >gi|148550755|ref|YP_001260194.1| cell cycle transcriptional regulator CtrA [Sphingomonas wittichii RW1] gi|148503174|gb|ABQ71427.1| cell cycle transcriptional regulator CtrA [Sphingomonas wittichii RW1] Length = 233 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 146/227 (64%), Positives = 185/227 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD +A ++ELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ GF Sbjct: 1 MRVLLIEDDNTVASALELMLSAEGFNVYSTDLGEEGLDLGKSYDYDLICLDLNLPDMHGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR+ ++ TPV ILSG+S ++ KVR GAD+Y++KPF+K ELVARI A+VRRS+ Sbjct: 61 DVLKKLRMGRVETPVLILSGISELDSKVRAFAMGADEYLTKPFHKVELVARINAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA+S+I G ++VNLD K EV G RIHLTGKEY M+ELL+LR+ +TLTKEMFLNHLY Sbjct: 121 GHAESVIRIGKIAVNLDGKVAEVDGARIHLTGKEYAMLELLALRQGSTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 G DEPE+KIIDVFICKLRKKL+ A GG+NYIETVWGRGY+LR ++ Sbjct: 181 GIDEPELKIIDVFICKLRKKLTLACGGENYIETVWGRGYMLRAPGEE 227 >gi|83309728|ref|YP_419992.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82944569|dbj|BAE49433.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 238 Score = 308 bits (788), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 149/223 (66%), Positives = 184/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ ++ +IE MLK+E V T LGEDG+E+ K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLVVEDDQLMSRAIESMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR A+I TPV ILSG+S + K++GL SGADDY++KPF+K ELVARI+AIVRRS+ Sbjct: 61 EVLRRLRSARIDTPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG LSVNLDA+TV V G +HLT KEY ++ELLSLRK TLTKE FLNHLY Sbjct: 121 GHAQSVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ Sbjct: 181 GIDEPELKIIDVFICKLRKKLATATGGESYIETVWGRGYVLRD 223 >gi|144900258|emb|CAM77122.1| two-component cell cycle transcriptional regulator ctrA, winged helix family [Magnetospirillum gryphiswaldense MSR-1] Length = 233 Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 148/223 (66%), Positives = 181/223 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ +A IE MLK+E V T LGEDG+E+ K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLVVEDDRMMAQVIETMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR ++I TPV ILSG++ + K++GL GADDY++KPF+K ELVARI+AIVRRS+ Sbjct: 61 EVLRRLRASRIETPVLILSGLTEPDKKIKGLGFGADDYLTKPFDKGELVARIQAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG LSVNLD +TV+V G +HLT KEY ++ELLSLRK TLTKE FLNHLY Sbjct: 121 GHAQSVIKTGKLSVNLDQRTVDVGGEPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+ Sbjct: 181 GIDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRD 223 >gi|46201677|ref|ZP_00054581.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 234 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 146/219 (66%), Positives = 180/219 (82%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 ++EDD+ ++ +IE MLK+E V T LGEDG+E+ K Y++D I+LDL L D+ G+EVLR Sbjct: 1 MVEDDQLMSRAIEAMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGYEVLR 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 LR A+I TPV ILSG+S + K++GL SGADDY++KPF+K ELVARI+AIVRRS+GHAQ Sbjct: 61 RLRSARIETPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSKGHAQ 120 Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184 S+I TG LSVNLDA+TV V G +HLT KEY ++ELLSLRK TLTKE FLNHLY G DE Sbjct: 121 SVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYGGIDE 180 Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ Sbjct: 181 PELKIIDVFICKLRKKLATATGGESYIETVWGRGYVLRD 219 >gi|163747146|ref|ZP_02154502.1| transcriptional regulator CtrA [Oceanibulbus indolifex HEL-45] gi|161379707|gb|EDQ04120.1| transcriptional regulator CtrA [Oceanibulbus indolifex HEL-45] Length = 235 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 184/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLVEDDPTTSRSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR+A+I TP+ ILSG E+K+RG GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 DVLRQLRLARIDTPILILSGADDTENKIRGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I TG ++VNLDAKTV V +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIETGQVAVNLDAKTVSVNDSPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS A GG++YIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSQATGGESYIETVWGRGYVLRD 223 >gi|110679831|ref|YP_682838.1| transcriptional regulator CtrA [Roseobacter denitrificans OCh 114] gi|109455947|gb|ABG32152.1| transcriptional regulator CtrA [Roseobacter denitrificans OCh 114] Length = 239 Score = 301 bits (771), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 184/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + S+ELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLVEDDPTTSKSVELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTV V +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIETGLISVNLDAKTVSVDNKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLSNA G+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATNGENYIETVWGRGYVLRD 223 >gi|83591864|ref|YP_425616.1| two component transcriptional regulator / cell cycle transcriptional regulator CtrA [Rhodospirillum rubrum ATCC 11170] gi|83574778|gb|ABC21329.1| two component transcriptional regulator, winged helix family / cell cycle transcriptional regulator CtrA [Rhodospirillum rubrum ATCC 11170] Length = 239 Score = 301 bits (770), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 142/223 (63%), Positives = 181/223 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD A A SI+L+LK E + V TD GEDG+E+ K Y++D +I+DL L D+ G Sbjct: 1 MRVLVIEDDAATARSIDLVLKKEGWVVDTTDSGEDGLEIGKLYDYDILIVDLMLPDMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR ++I+TPV ILSG++ + KV+GL GADDY++KPF+K EL+AR++AIVRRS Sbjct: 61 EVIRHLRASRINTPVLILSGLNESDRKVKGLGVGADDYLTKPFDKSELIARLQAIVRRSM 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS++ G + VNLDA+TV V G +HLTGKEY ++ELL+LRK +TLTKE FLNHLY Sbjct: 121 GHSQSVVTVGQMEVNLDARTVSVAGDPVHLTGKEYGILELLTLRKGSTLTKEQFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKL+ A GG NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLAQATGGTNYIETVWGRGYVLRD 223 >gi|163731900|ref|ZP_02139347.1| transcriptional regulator CtrA [Roseobacter litoralis Och 149] gi|161395354|gb|EDQ19676.1| transcriptional regulator CtrA [Roseobacter litoralis Och 149] Length = 239 Score = 300 bits (769), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 184/223 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + S+ELML N NVY TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLVEDDPTTSKSVELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTV V +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIETGLISVNLDAKTVSVDNKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLSNA G+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATDGENYIETVWGRGYVLRD 223 >gi|83942324|ref|ZP_00954785.1| DNA-binding response regulator CtrA [Sulfitobacter sp. EE-36] gi|83953543|ref|ZP_00962264.1| DNA-binding response regulator CtrA [Sulfitobacter sp. NAS-14.1] gi|83841488|gb|EAP80657.1| DNA-binding response regulator CtrA [Sulfitobacter sp. NAS-14.1] gi|83846417|gb|EAP84293.1| DNA-binding response regulator CtrA [Sulfitobacter sp. EE-36] Length = 239 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 153/225 (68%), Positives = 183/225 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N N Y TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNTYTTDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR++KI TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 DVLRQLRLSKIQTPILILSGSDDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I G +SVNLDAK+V V +HLTGKEYQM ELLSLRK +TLTKEMFLNHLY Sbjct: 121 GHSQSVINVGRVSVNLDAKSVTVGDKPVHLTGKEYQMFELLSLRKGSTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+ A Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPA 225 >gi|254488127|ref|ZP_05101332.1| transcriptional regulator CtrA [Roseobacter sp. GAI101] gi|214044996|gb|EEB85634.1| transcriptional regulator CtrA [Roseobacter sp. GAI101] Length = 239 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 151/223 (67%), Positives = 180/223 (80%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + SIE+ML N N Y TDLGE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRVLLVEDDPTTSKSIEMMLTHANLNTYATDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+++I TP+ ILSG E K++G GADDY++KPF++EELVARI AI+RR + Sbjct: 61 EVLRQLRLSRIETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRYK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG +SVNLDAKTV V +HLTGKEYQM ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIQTGQVSVNLDAKTVTVDDKTVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE+KIIDVFICKLRKKLS A GG+NYIETVWGRGYVLR+ Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGENYIETVWGRGYVLRD 223 >gi|218673989|ref|ZP_03523658.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli GR56] Length = 186 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 138/186 (74%), Positives = 163/186 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPE 186 G DEPE Sbjct: 181 GMDEPE 186 >gi|189183277|ref|YP_001937062.1| transcriptional activator protein CzcR [Orientia tsutsugamushi str. Ikeda] gi|189180048|dbj|BAG39828.1| transcriptional activator protein CzcR [Orientia tsutsugamushi str. Ikeda] Length = 245 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 133/229 (58%), Positives = 175/229 (76%), Gaps = 6/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIEL L +E LG+DGIE+ K Y++ IILDL L DI G+ Sbjct: 1 MRVLLIEDDPAQASSIELSLANEGIIADKAHLGKDGIEISKLYDYSLIILDLMLPDISGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +LR KI TPV ILSG+S+I++K++GL GADDYI+KPF+ +EL AR++AI+RRS+ Sbjct: 61 EVLLSLRSQKIQTPVLILSGLSTIDNKIKGLSFGADDYITKPFDSDELSARVKAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV------QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 GH++++I G LS+NLD ++V + + IHLT KEY+++ELL+++K T LTKEMF Sbjct: 121 GHSEAVIRVGHLSINLDTRSVSMYNKDKQKNMPIHLTNKEYKILELLAIKKGTVLTKEMF 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+HLY G DEPE+KIIDVFICKLR+KL A+ G N+IETVWGRGY+ E Sbjct: 181 LSHLYSGIDEPEIKIIDVFICKLRRKLEKASNGINFIETVWGRGYIFAE 229 >gi|148284743|ref|YP_001248833.1| CzcR-like response regulator [Orientia tsutsugamushi str. Boryong] gi|146740182|emb|CAM80430.1| CzcR-like response regulator [Orientia tsutsugamushi str. Boryong] Length = 245 Score = 274 bits (701), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 133/229 (58%), Positives = 175/229 (76%), Gaps = 6/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIEL L +E LG+DGIE+ K Y++ IILDL L DI G+ Sbjct: 1 MRVLLIEDDPAQASSIELSLANEGIIADKAHLGKDGIEISKLYDYSLIILDLMLPDISGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +LR KI TPV ILSG+S+I++K++GL GADDYI+KPF+ +EL AR++AI+RRS+ Sbjct: 61 EVLLSLRSQKIQTPVLILSGLSTIDNKIKGLSFGADDYITKPFDSDELSARVKAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV------QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 GH++++I G LS+NLD ++V + + IHLT KEY+++ELL+++K T LTKEMF Sbjct: 121 GHSEAVIRVGHLSINLDTRSVSMYNKDKQKNIPIHLTNKEYKILELLAIKKGTVLTKEMF 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+HLY G DEPE+KIIDVFICKLR+KL A+ G N+IETVWGRGY+ E Sbjct: 181 LSHLYSGIDEPEIKIIDVFICKLRRKLEKASNGINFIETVWGRGYIFAE 229 >gi|91206110|ref|YP_538465.1| transcriptional activator protein CzcR [Rickettsia bellii RML369-C] gi|157826457|ref|YP_001495521.1| transcriptional activator protein CzcR [Rickettsia bellii OSU 85-389] gi|91069654|gb|ABE05376.1| Transcriptional activator protein CzcR [Rickettsia bellii RML369-C] gi|157801761|gb|ABV78484.1| Transcriptional activator protein CzcR [Rickettsia bellii OSU 85-389] Length = 237 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 133/223 (59%), Positives = 170/223 (76%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ +A+ IEL L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEDEPEMANLIELTLASEGIVCDKVSVGLEGLRLGKLGRYDLMILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +SVNLD ++VE+ G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEIDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGGK+YI+TVWGRGY+L+E Sbjct: 181 SLDEPEMKIIDVFICKLRKKLSDAAGGKDYIDTVWGRGYMLKE 223 >gi|157825231|ref|YP_001492951.1| transcriptional activator protein CzcR [Rickettsia akari str. Hartford] gi|157799189|gb|ABV74443.1| Transcriptional activator protein CzcR [Rickettsia akari str. Hartford] Length = 237 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 132/223 (59%), Positives = 171/223 (76%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ +A+ IEL L SE +G +G+ + K +D +ILD+ L DI GF Sbjct: 1 MRVLLIEDELEMANLIELTLASEGIVCDKASVGVEGLRIGKVCGYDLVILDIMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKINGFYSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ + +SVNLD +TVEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHAASIFMFDKVSVNLDTRTVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|239947000|ref|ZP_04698753.1| transcriptional activator protein CzcR [Rickettsia endosymbiont of Ixodes scapularis] gi|239921276|gb|EER21300.1| transcriptional activator protein CzcR [Rickettsia endosymbiont of Ixodes scapularis] Length = 237 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 133/223 (59%), Positives = 171/223 (76%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ +A+ IEL L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEDEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +SVNLDA++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLN+LY Sbjct: 121 GHAASVFRFDKVSVNLDARSVEVNGKKVHLTNKEYAILELLILRRGTILTKEMFLNYLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|15603950|ref|NP_220465.1| transcriptional activator protein CZCR (czcR) [Rickettsia prowazekii str. Madrid E] gi|3860641|emb|CAA14542.1| TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR) [Rickettsia prowazekii] gi|292571668|gb|ADE29583.1| Transcriptional activator protein CzcR [Rickettsia prowazekii Rp22] Length = 237 Score = 268 bits (686), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 131/223 (58%), Positives = 169/223 (75%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ +A+ IE+ L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEDESEMANLIEITLASEGIVCDKASVGVEGLRLGKVGIYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +SVNLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHAASIFRFDKISVNLDTRSVEVDGKKLHLTNKEYSILELLILRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 TVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|157964137|ref|YP_001498961.1| transcriptional activator protein CzcR [Rickettsia massiliae MTU5] gi|157843913|gb|ABV84414.1| Transcriptional activator protein CzcR [Rickettsia massiliae MTU5] Length = 243 Score = 268 bits (685), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 131/223 (58%), Positives = 169/223 (75%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIE + +A+ IEL L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 7 MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 67 EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +S+NLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 127 GHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 187 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 229 >gi|67458448|ref|YP_246072.1| transcriptional activator protein CzcR [Rickettsia felis URRWXCal2] gi|67003981|gb|AAY60907.1| Transcriptional activator protein CzcR [Rickettsia felis URRWXCal2] Length = 237 Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 130/223 (58%), Positives = 168/223 (75%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIE++ +A+ IEL L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEEEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ G SG DDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGTDDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S+ +SVNLD +TVEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHVASVFRFDKVSVNLDTRTVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+T+WGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTIWGRGYMLKE 223 >gi|51473272|ref|YP_067029.1| transcriptional activator protein CzcR [Rickettsia typhi str. Wilmington] gi|51459584|gb|AAU03547.1| transcriptional activator protein CzcR [Rickettsia typhi str. Wilmington] Length = 237 Score = 267 bits (683), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 130/223 (58%), Positives = 169/223 (75%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ +A+ IE+ L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MKVLLIEDESEMANLIEITLASEGIVCDKASVGVEGLRLGKIGIYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +SVNLD ++VEV G +IHLT KEY ++ELL +R+ T LTKEMFLNHLY Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEVDGKKIHLTNKEYSILELLIIRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|15892024|ref|NP_359738.1| transcriptional activator protein czcR [Rickettsia conorii str. Malish 7] gi|15619141|gb|AAL02639.1| transcriptional activator protein czcR [Rickettsia conorii str. Malish 7] Length = 237 Score = 267 bits (683), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 131/223 (58%), Positives = 168/223 (75%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIE + +A+ IEL L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +S+NLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|229586314|ref|YP_002844815.1| Transcriptional activator protein CzcR [Rickettsia africae ESF-5] gi|228021364|gb|ACP53072.1| Transcriptional activator protein CzcR [Rickettsia africae ESF-5] Length = 237 Score = 267 bits (682), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 132/223 (59%), Positives = 167/223 (74%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIE + +A+ IEL L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS + K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLMDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +SVNLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|238650537|ref|YP_002916389.1| transcriptional activator protein czcR [Rickettsia peacockii str. Rustic] gi|238624635|gb|ACR47341.1| transcriptional activator protein czcR [Rickettsia peacockii str. Rustic] Length = 237 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 130/223 (58%), Positives = 168/223 (75%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIE + +A+ IEL L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR AKI TP+ ILS ++ K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 KILLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +S+NLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLVLRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|254454488|ref|ZP_05067925.1| DNA-binding response regulator CtrA [Octadecabacter antarcticus 238] gi|198268894|gb|EDY93164.1| DNA-binding response regulator CtrA [Octadecabacter antarcticus 238] Length = 246 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 127/189 (67%), Positives = 154/189 (81%) Query: 19 MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 ML N NVY TDLGE+GI+L K +++D I+LD+ L D+ G EVLR LR+++I TP+ IL Sbjct: 1 MLSHANLNVYSTDLGEEGIDLAKLFDYDLILLDINLPDMNGHEVLRQLRLSRIETPILIL 60 Query: 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDA 138 SG E K++G GADDY++KPF++EELVARI AI+RRS+GHAQS+I TG ++VNLDA Sbjct: 61 SGEDGTESKLKGFGFGADDYMTKPFHREELVARIHAIIRRSKGHAQSIIKTGVIAVNLDA 120 Query: 139 KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLR 198 KTVEV +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G DEPE+KIIDVFICKLR Sbjct: 121 KTVEVDSSPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLR 180 Query: 199 KKLSNAAGG 207 KKL+ A GG Sbjct: 181 KKLTEATGG 189 >gi|157827976|ref|YP_001494218.1| transcriptional activator protein czcR [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932668|ref|YP_001649457.1| cell cycle transcriptional regulator [Rickettsia rickettsii str. Iowa] gi|157800457|gb|ABV75710.1| transcriptional activator protein czcR [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907755|gb|ABY72051.1| cell cycle transcriptional regulator [Rickettsia rickettsii str. Iowa] Length = 237 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 130/223 (58%), Positives = 168/223 (75%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIE + +A+ IEL L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ K+ SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTYQKITDFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +S+NLD ++VEV+G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHAASVFRFDKVSINLDTRSVEVEGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|157803257|ref|YP_001491806.1| preprotein translocase subunit SecB [Rickettsia canadensis str. McKiel] gi|157784520|gb|ABV73021.1| preprotein translocase subunit SecB [Rickettsia canadensis str. McKiel] Length = 237 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 128/223 (57%), Positives = 166/223 (74%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED +A+ IEL L SE +G + + L K +D +ILDL L DI F Sbjct: 1 MRVLLIEDKPEMANLIELTLASEGIVCDKASVGVEDLRLAKVSGYDLVILDLMLPDINSF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ G GADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKITGFSFGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S+ +SVNLD ++VEV+G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY+ Sbjct: 121 GHVASVFRFDKVSVNLDTRSVEVEGKKVHLTNKEYAVLELLILRRGTILTKEMFLNHLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEP +KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E Sbjct: 181 SVDEPAIKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223 >gi|34580940|ref|ZP_00142420.1| transcriptional activator protein czcR [Rickettsia sibirica 246] gi|28262325|gb|EAA25829.1| transcriptional activator protein czcR [Rickettsia sibirica 246] Length = 237 Score = 262 bits (669), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 130/223 (58%), Positives = 166/223 (74%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIE + +A+ IEL L SE +G +G+ L K +D +ILDL L DI G Sbjct: 1 MRVLLIEGEPKMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ +SVNLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DEPE+KIIDVFICKLRKKLS+AA G++YI+TVWGRGY+L+E Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAACGRDYIDTVWGRGYMLKE 223 >gi|218515993|ref|ZP_03512833.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli 8C-3] Length = 168 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 122/168 (72%), Positives = 147/168 (87%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVARI AIVRRS+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TT Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTT 168 >gi|149915232|ref|ZP_01903760.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. AzwK-3b] gi|149810953|gb|EDM70792.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. AzwK-3b] Length = 257 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 122/195 (62%), Positives = 155/195 (79%), Gaps = 4/195 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD A SI++ML N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G Sbjct: 1 MRVLLVEDDPTTAKSIDMMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+I TP+ ILSG E+K++G GADDY++KPF++EELVARI AI+RRS+ Sbjct: 61 EVLRQLRLARIDTPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+QS+I TG ++VNLDAKTV+V+G +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY Sbjct: 121 GHSQSVIRTGRINVNLDAKTVDVEGRTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 181 GRDEPEVKIIDVFIC 195 R +I ++IC Sbjct: 181 ARK----LLIFLYIC 191 >gi|114766934|ref|ZP_01445854.1| DNA-binding response regulator CtrA [Pelagibaca bermudensis HTCC2601] gi|114540841|gb|EAU43903.1| DNA-binding response regulator CtrA [Roseovarius sp. HTCC2601] Length = 179 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 120/179 (67%), Positives = 145/179 (81%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SIELML N NVY TDLGE+GI+L K Y++D I+LDL L DI G Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDIDGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+A+ISTP+ ILSG + K++G GADDY++KPF+++ELVARI AI+RRS+ Sbjct: 61 EVLRQLRMARISTPILILSGADDTDSKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GH+QS+I TG +SVNLDAKTVEV G +HLTGKEYQM+ELLSLRK TTLTKEMFL HLY Sbjct: 121 GHSQSVIRTGKISVNLDAKTVEVGGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLKHLY 179 >gi|296536465|ref|ZP_06898560.1| DNA-binding response regulator [Roseomonas cervicalis ATCC 49957] gi|296263209|gb|EFH09739.1| DNA-binding response regulator [Roseomonas cervicalis ATCC 49957] Length = 258 Score = 247 bits (631), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 119/223 (53%), Positives = 160/223 (71%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD A + +MLK+ GE+ +EL Y++D IILD+ L D+ G+ Sbjct: 11 MRVLLVEDDLTTARGVAMMLKASAMIADTAGTGEEALELAGLYDYDIIILDIMLPDMEGY 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR ++ TPV ILSG+S + KV+ GADD+I+KPF+++EL+ARI+AI+RR++ Sbjct: 71 EVVRRLRGNRVETPVLILSGLSRPQAKVKAFGMGADDFITKPFDQQELMARIQAIIRRAK 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +Q + G L++NL ++ V V +HLTGKEY ++ELL LRK LTKE+FLNHLY Sbjct: 131 GFSQPTLSVGPLTLNLGSRDVRVNDREVHLTGKEYAILELLVLRKGLVLTKEVFLNHLYG 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DEPE KIIDVFICKLRKKL+ A G+ I TVWGRGYVLR+ Sbjct: 191 GIDEPEAKIIDVFICKLRKKLAQAGAGE-LIGTVWGRGYVLRD 232 >gi|58040125|ref|YP_192089.1| cell cycle transcriptional regulator CtrA [Gluconobacter oxydans 621H] gi|58002539|gb|AAW61433.1| Cell cycle transcriptional regulator CtrA [Gluconobacter oxydans 621H] Length = 247 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 116/231 (50%), Positives = 168/231 (72%), Gaps = 4/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++ D++ A ++ +L++ +F V T GE+ IE+ + Y++D ++L+L L D+ G+ Sbjct: 1 MRILLVDSDQSAATTLSQILRTASFTVDHTPSGEEAIEMLRHYDYDVVVLELMLNDLEGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R R A+I+TP+ +LS + + K+R GADDY++KP++ ELVAR++A++RRSR Sbjct: 61 EVIRRARAARITTPILVLSALLRPQAKIRAFSMGADDYMTKPYDAGELVARLQAVMRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ + G+L ++L+ K V V G +HLTGKEY ++ELL +RK + LTK+ FLNHLY Sbjct: 121 GFAEPKLRVGNLELDLNGKNVTVDGAPLHLTGKEYAILELLVIRKGSVLTKDAFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G DEPE+KIIDVFICKLR+KL N G N I TVWGRGY+LRE D+T E Sbjct: 181 GIDEPEMKIIDVFICKLRRKLQNVGAG-NLIATVWGRGYILRE---DDTAE 227 >gi|269958512|ref|YP_003328299.1| putative response regulator [Anaplasma centrale str. Israel] gi|269848341|gb|ACZ48985.1| putative response regulator [Anaplasma centrale str. Israel] Length = 294 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 132/232 (56%), Positives = 164/232 (70%), Gaps = 4/232 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57 MRILLIEDD A A ++E L SE +D G + K ++D +ILD+ + Sbjct: 3 MRILLIEDDVACARAVEASLSSEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKV 62 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+++L LR + I PV ILS +SS+ KV+GL GADDYI+KPF+K EL+ARI+AIVR Sbjct: 63 DGYDILVKLRESGIKVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVR 122 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RGH +S++ G++S+NLD K VE G IHLT KEY MIELLS R T LTKEMFL+H Sbjct: 123 RTRGHPESIVRVGNISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 182 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 LY DEP + KIIDVF+CKLRKKL A GGKNYIETVWGRGYVL+E A D+ Sbjct: 183 LYRELDEPSDDKIIDVFMCKLRKKLKVANGGKNYIETVWGRGYVLKECASDD 234 >gi|42520575|ref|NP_966490.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410314|gb|AAS14424.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of Drosophila melanogaster] Length = 256 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 128/234 (54%), Positives = 171/234 (73%), Gaps = 7/234 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSE-NFNVYVT---DLGEDGIELCKFYEFDAIILDLGLT- 55 MRILLIEDD+ A ++ L S+ +F VT D + + Y +D +ILD+ L Sbjct: 1 MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDY-YDLVILDIHLPG 59 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 DI G+++L LR AKI PV ILS +S++ K +GL GADDY++KPF+K EL+ARI+AI Sbjct: 60 DIDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAI 119 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 VRR++GH +S+I G++++N D + VEV+G +HLT KEY MIELL+LRK T LTKEMFL Sbjct: 120 VRRTKGHPESVIKIGNININFDHRVVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFL 179 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 NHLY+G DEP + KI+DVF+CKLRKKL +A GK++IETVWGRGYVL+E D+ Sbjct: 180 NHLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYIDDD 233 >gi|58696682|ref|ZP_00372233.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of Drosophila simulans] gi|225630493|ref|YP_002727284.1| two component transcriptional regulator [Wolbachia sp. wRi] gi|58537144|gb|EAL60252.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of Drosophila simulans] gi|225592474|gb|ACN95493.1| two component transcriptional regulator [Wolbachia sp. wRi] Length = 256 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 128/234 (54%), Positives = 171/234 (73%), Gaps = 7/234 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSE-NFNVYVT---DLGEDGIELCKFYEFDAIILDLGLT- 55 MRILLIEDD+ A ++ L S+ +F VT D + + Y +D +ILD+ L Sbjct: 1 MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDY-YDLVILDIHLPG 59 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 DI G+++L LR AKI PV ILS +S++ K +GL GADDY++KPF+K EL+ARI+AI Sbjct: 60 DIDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAI 119 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 VRR++GH +S+I G++++N D + VEV+G +HLT KEY MIELL+LRK T LTKEMFL Sbjct: 120 VRRTKGHPESVIKIGNININFDHRIVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFL 179 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 NHLY+G DEP + KI+DVF+CKLRKKL +A GK++IETVWGRGYVL+E D+ Sbjct: 180 NHLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYIDDD 233 >gi|56417080|ref|YP_154154.1| transcriptional activator protein [Anaplasma marginale str. St. Maries] gi|56388312|gb|AAV86899.1| transcriptional activator protein [Anaplasma marginale str. St. Maries] Length = 290 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 131/232 (56%), Positives = 163/232 (70%), Gaps = 4/232 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57 MRILLIEDD A A ++E L SE +D G + K ++D +ILD+ + Sbjct: 1 MRILLIEDDVACARAVEASLSSEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKV 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+++L LR + I PV ILS +SS+ KV+GL GADDYI+KPF+K EL+ARI+AIVR Sbjct: 61 DGYDILVKLRESGIKVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RGH +S++ G++S+NLD K VE G IHLT KEY MIELLS R T LTKEMFL+H Sbjct: 121 RTRGHPESIVRVGNISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 LY DEP + KIIDVF+CKLRKKL A GKNYIETVWGRGYVL+E A D+ Sbjct: 181 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKECASDD 232 >gi|296117363|ref|ZP_06835953.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976129|gb|EFG82917.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] Length = 256 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 112/225 (49%), Positives = 160/225 (71%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+E DKA+ L++ F V G D I + K Y++D +L+LGL D+ G Sbjct: 1 MRVLLVEPDKAMMDKEASQLQAVGFMVDHATSGHDAIAMLKLYDYDIAVLELGLPDMEGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+R R A+I+TP+ ILS S + KV+ +GADDY+++P++ EL AR++A++RRS+ Sbjct: 61 DVVRRCRAARIATPILILSAQDSAQAKVKAFSTGADDYVTRPYDPMELTARMQAVIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+++ + G L ++LD++ V V G +HLTGKEY ++ELL LRK LTK+ FLNHLY Sbjct: 121 GYSEPTLQAGALRLSLDSRDVSVNGRSVHLTGKEYMILELLLLRKGMVLTKDAFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICKLRKKL AGG+N I TVWG+GY+L+++A Sbjct: 181 GMDEPEMKIIDVFICKLRKKLQK-AGGENLITTVWGQGYMLKDDA 224 >gi|222475446|ref|YP_002563863.1| transcriptional activator protein (czcR) [Anaplasma marginale str. Florida] gi|222419584|gb|ACM49607.1| transcriptional activator protein (czcR) [Anaplasma marginale str. Florida] Length = 292 Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 131/232 (56%), Positives = 163/232 (70%), Gaps = 4/232 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57 MRILLIEDD A A ++E L SE +D G + K ++D +ILD+ + Sbjct: 3 MRILLIEDDVACARAVEASLSSEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKV 62 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+++L LR + I PV ILS +SS+ KV+GL GADDYI+KPF+K EL+ARI+AIVR Sbjct: 63 DGYDILVKLRESGIKVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVR 122 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RGH +S++ G++S+NLD K VE G IHLT KEY MIELLS R T LTKEMFL+H Sbjct: 123 RTRGHPESIVRVGNISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 182 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 LY DEP + KIIDVF+CKLRKKL A GKNYIETVWGRGYVL+E A D+ Sbjct: 183 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKECASDD 234 >gi|254995251|ref|ZP_05277441.1| transcriptional activator protein (czcR) [Anaplasma marginale str. Mississippi] gi|255003432|ref|ZP_05278396.1| transcriptional activator protein (czcR) [Anaplasma marginale str. Puerto Rico] gi|255004551|ref|ZP_05279352.1| transcriptional activator protein (czcR) [Anaplasma marginale str. Virginia] Length = 292 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 131/232 (56%), Positives = 163/232 (70%), Gaps = 4/232 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57 MRILLIEDD A A ++E L SE +D G + K ++D +ILD+ + Sbjct: 3 MRILLIEDDVACARAVEASLSSEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKV 62 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+++L LR + I PV ILS +SS+ KV+GL GADDYI+KPF+K EL+ARI+AIVR Sbjct: 63 DGYDILVKLRESGIKVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVR 122 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RGH +S++ G++S+NLD K VE G IHLT KEY MIELLS R T LTKEMFL+H Sbjct: 123 RTRGHPESIVRVGNISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 182 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 LY DEP + KIIDVF+CKLRKKL A GKNYIETVWGRGYVL+E A D+ Sbjct: 183 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKECASDD 234 >gi|225631101|ref|ZP_03787828.1| two component transcriptional regulator [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591203|gb|EEH12358.1| two component transcriptional regulator [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 256 Score = 239 bits (609), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 128/234 (54%), Positives = 170/234 (72%), Gaps = 7/234 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSE-NFNVYVT---DLGEDGIELCKFYEFDAIILDLGLT- 55 MRILLIEDD+ A ++ L S+ +F VT D + + Y +D +ILD+ L Sbjct: 1 MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDY-YDLVILDIHLPG 59 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 DI G+++L LR AKI PV ILS +S++ K +GL GADDY++KPF+K EL+ARI+AI Sbjct: 60 DIDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAI 119 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 VRR++GH +S+I G++++N D + VEV+G +HLT KEY MIELL+LRK T LTKEMFL Sbjct: 120 VRRTKGHPESVIKIGNININFDHRIVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFL 179 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 NHLY+G DEP KI+DVF+CKLRKKL +A GK++IETVWGRGYVL+E D+ Sbjct: 180 NHLYNGLDEPSNNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYIDDD 233 >gi|58584853|ref|YP_198426.1| response regulator [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419169|gb|AAW71184.1| Response regulator consisting of a CheY-like receiver domain and wHTH-type DNA-binding domain [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 256 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 124/233 (53%), Positives = 167/233 (71%), Gaps = 5/233 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLT-D 56 MRILLIEDD+ A ++ L S+ V +D + +D +ILD+ L D Sbjct: 1 MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDHYDLVILDIHLPGD 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 I G+++L LR AKI PV ILS +S++ K +GL GADDY++KPF+K EL+ARI+AIV Sbjct: 61 IDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIV 120 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RR++GH +S+I G++++N D + VEV+G +HLT KEY MIELL+LRK T LTKEMFL+ Sbjct: 121 RRTKGHPESVIKIGNININFDHRVVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLD 180 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 HLY+G DEP + KI+DVF+CKLRKKL +A GK++IETVWGRGYVL+E +E Sbjct: 181 HLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYVDEE 233 >gi|88607685|ref|YP_505647.1| DNA-binding response regulator [Anaplasma phagocytophilum HZ] gi|88598748|gb|ABD44218.1| DNA-binding response regulator CtrA [Anaplasma phagocytophilum HZ] Length = 276 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 128/232 (55%), Positives = 163/232 (70%), Gaps = 4/232 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57 MRILLIEDD A A ++E L +E +D G + K ++D +ILD+ I Sbjct: 1 MRILLIEDDVACAKAVEASLSAEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKI 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+++L LR + I PV ILS +SS+ KV+GL GADDYI+KPF+K EL+ARI+A+VR Sbjct: 61 DGYDILVKLRESGIRVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAVVR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RGH +S++ G++S+NLD K V G+ IHLT KEY MIELLS R T LTKEMFL+H Sbjct: 121 RTRGHPESIVRVGNISINLDHKCVSCNGNIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 LY DEP + KIIDVF+CKLRKKL A GKNYIETVWGRGYVL+E+ D+ Sbjct: 181 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKEHPCDD 232 >gi|190570997|ref|YP_001975355.1| two component transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019514|ref|ZP_03335320.1| two component transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357269|emb|CAQ54693.1| two component transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994936|gb|EEB55578.1| two component transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|222825037|dbj|BAH22195.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 256 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 125/241 (51%), Positives = 168/241 (69%), Gaps = 21/241 (8%) Query: 1 MRILLIEDDKALA-----------HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAII 49 MRILLIEDD+ A H +++ ++++N + G D C +D +I Sbjct: 1 MRILLIEDDQVSARTVVNALTSDGHFCDVVTSAQDYNNNMVSSGGD----C----YDLVI 52 Query: 50 LDLGLT-DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL 108 LD+ L DI G+++L LR AKI PV ILS +S+ K +GL GADDY++KPF+K EL Sbjct: 53 LDIHLPGDIDGYDILLRLRSAKIKVPVLILSCISAANHKAKGLGYGADDYLTKPFHKSEL 112 Query: 109 VARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 +ARI+AIVRR++GH +S+I G++++N D + VEV+G +HLT KEY MIELL+LRK Sbjct: 113 LARIKAIVRRTKGHPESVIKIGNMNINFDHRIVEVKGKTVHLTNKEYSMIELLALRKGAV 172 Query: 169 LTKEMFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 LTKEMFLNHLY+G DEP + KI+DVF+CKLRKKL +A G ++IETVWGRGYVL+E D Sbjct: 173 LTKEMFLNHLYNGLDEPSDNKIVDVFMCKLRKKLESANDGISHIETVWGRGYVLKEYVDD 232 Query: 228 E 228 E Sbjct: 233 E 233 >gi|73667430|ref|YP_303446.1| response regulator receiver: C terminal [Ehrlichia canis str. Jake] gi|72394571|gb|AAZ68848.1| Response regulator receiver: C terminal [Ehrlichia canis str. Jake] Length = 266 Score = 234 bits (597), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 127/227 (55%), Positives = 160/227 (70%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57 MRILLIEDD A A ++E L SE +D G + K ++D +ILD+ I Sbjct: 1 MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDVVILDIHFPGKI 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+++L LR + I PV ILS +SS+ KV+GL GADDY++KPF+K EL+ARI+AIVR Sbjct: 61 DGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RGH +S++ G++++NLD K VE G +HLT KEY MIELLS R T LTKEMFL+H Sbjct: 121 RTRGHPESIVRVGNIAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LY DEP + KIIDVF+CKLRKKL A GKNYIETVWGRGYVL+E Sbjct: 181 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKE 227 >gi|57239513|ref|YP_180649.1| hypothetical protein Erum7860 [Ehrlichia ruminantium str. Welgevonden] gi|57161592|emb|CAH58520.1| putative response regulator component of a two-component regulatory system [Ehrlichia ruminantium str. Welgevonden] Length = 267 Score = 234 bits (597), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 127/227 (55%), Positives = 160/227 (70%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57 MRILLIEDD A A ++E L SE +D G + K ++D +ILD+ I Sbjct: 1 MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDIVILDIHFPGKI 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+++L LR + I PV ILS +SS+ KV+GL GADDY++KPF+K EL+ARI+AIVR Sbjct: 61 DGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RGH +S++ G++++NLD K VE G +HLT KEY MIELLS R T LTKEMFL+H Sbjct: 121 RTRGHPESIVRVGNIAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LY DEP + KIIDVF+CKLRKKL A GKNYIETVWGRGYVL+E Sbjct: 181 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKE 227 >gi|68171373|ref|ZP_00544767.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|88658273|ref|YP_507798.1| DNA-binding response regulator [Ehrlichia chaffeensis str. Arkansas] gi|67772423|gb|AAY79413.1| transcriptional activator protein [Ehrlichia chaffeensis] gi|67999198|gb|EAM85854.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|88599730|gb|ABD45199.1| DNA-binding response regulator [Ehrlichia chaffeensis str. Arkansas] Length = 265 Score = 234 bits (596), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 127/227 (55%), Positives = 160/227 (70%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57 MRILLIEDD A A ++E L SE +D G + K ++D +ILD+ I Sbjct: 1 MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDVVILDIHFPGKI 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+++L LR + I PV ILS +SS+ KV+GL GADDY++KPF+K EL+ARI+AIVR Sbjct: 61 DGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RGH +S++ G++++NLD K VE G +HLT KEY MIELLS R T LTKEMFL+H Sbjct: 121 RTRGHPESIVRVGNIAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LY DEP + KIIDVF+CKLRKKL A GKNYIETVWGRGYVL+E Sbjct: 181 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKE 227 >gi|58579495|ref|YP_197707.1| hypothetical protein ERWE_CDS_08310 [Ehrlichia ruminantium str. Welgevonden] gi|58617548|ref|YP_196747.1| hypothetical protein ERGA_CDS_08210 [Ehrlichia ruminantium str. Gardel] gi|58417160|emb|CAI28273.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] gi|58418121|emb|CAI27325.1| Unknown [Ehrlichia ruminantium str. Welgevonden] Length = 283 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 127/227 (55%), Positives = 160/227 (70%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57 MRILLIEDD A A ++E L SE +D G + K ++D +ILD+ I Sbjct: 17 MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDIVILDIHFPGKI 76 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+++L LR + I PV ILS +SS+ KV+GL GADDY++KPF+K EL+ARI+AIVR Sbjct: 77 DGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVR 136 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RGH +S++ G++++NLD K VE G +HLT KEY MIELLS R T LTKEMFL+H Sbjct: 137 RTRGHPESIVRVGNIAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSH 196 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LY DEP + KIIDVF+CKLRKKL A GKNYIETVWGRGYVL+E Sbjct: 197 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKE 243 >gi|60117371|gb|AAX14447.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of Drosophila mojavensis] Length = 221 Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 111/186 (59%), Positives = 147/186 (79%), Gaps = 2/186 (1%) Query: 45 FDAIILDLGLT-DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103 +D +ILD+ L DI G+++L LR AKI PV ILS +S++ K +GL GADDY++KPF Sbjct: 13 YDLVILDIHLPGDIDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPF 72 Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 +K EL+ARI+AIVRR++GH +S+I G++++N D + VEV+G +HLT KEY MIELL+L Sbjct: 73 HKSELLARIKAIVRRTKGHPESVIKIGNININFDHRIVEVKGKTVHLTNKEYSMIELLAL 132 Query: 164 RKNTTLTKEMFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 RK T LTKEMFLNHLY+G DEP + KI+DVF+CKLRKKL +A GK++IETVWGRGYVL+ Sbjct: 133 RKGTVLTKEMFLNHLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLK 192 Query: 223 ENAKDE 228 E D+ Sbjct: 193 EYIDDD 198 >gi|258543656|ref|YP_003189089.1| two component response regulator CtrA [Acetobacter pasteurianus IFO 3283-01] gi|256634734|dbj|BAI00710.1| two component response regulator CtrA [Acetobacter pasteurianus IFO 3283-01] gi|256637790|dbj|BAI03759.1| two component response regulator CtrA [Acetobacter pasteurianus IFO 3283-03] gi|256640844|dbj|BAI06806.1| two component response regulator CtrA [Acetobacter pasteurianus IFO 3283-07] gi|256643899|dbj|BAI09854.1| two component response regulator CtrA [Acetobacter pasteurianus IFO 3283-22] gi|256646954|dbj|BAI12902.1| two component response regulator CtrA [Acetobacter pasteurianus IFO 3283-26] gi|256650007|dbj|BAI15948.1| two component response regulator CtrA [Acetobacter pasteurianus IFO 3283-32] gi|256652997|dbj|BAI18931.1| two component response regulator CtrA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656051|dbj|BAI21978.1| two component response regulator CtrA [Acetobacter pasteurianus IFO 3283-12] Length = 261 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 112/233 (48%), Positives = 154/233 (66%), Gaps = 1/233 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+E++ + +I L +F+V + ++ IEL + Y++ IL L DI G+ Sbjct: 1 MRILLLENNFTSSRTIFSALTKASFSVDIAQCDQEAIELLRNYDYGLAILHLQQPDIHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR K++TPV ++S +++ E K + +GADDYI PF+ EL ARI+AI+RR Sbjct: 61 EILSTLRSLKLATPVIVISPVNNPEVKTKAFAAGADDYILDPFDATELTARIQAILRRVH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A + GDL+VN ++ TV V +HLTGKE+ ++ELL LRK TKE FLNHLY Sbjct: 121 GYAHPVAQIGDLTVNFNSHTVTVNNQPVHLTGKEFAILELLVLRKGIAQTKETFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233 GRDEP++KIIDVFICKLRKKL AAG N I TVWGRGY+L + + E + Sbjct: 181 GRDEPDIKIIDVFICKLRKKL-QAAGAGNLISTVWGRGYILNDPQASQAYESM 232 >gi|209543371|ref|YP_002275600.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531048|gb|ACI50985.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 244 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/225 (48%), Positives = 155/225 (68%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+E+D AH L++ + + G + +E+ + Y++D +L++ L DI G+ Sbjct: 1 MRVLLVENDGGTAHGTSSALRAIGYALDHVATGHEAVEMLRRYDYDLALLEMVLPDIDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRA R A+ TP+ LS + + KVR +GADDYI+KP++ EL ARI+A+VRRS+ Sbjct: 61 EVLRATRAARRETPIVALSSLGGPQAKVRAFSAGADDYITKPYDAPELAARIQAVVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ Q ++ G L ++LD++ V V G +HLTGKEY ++ELL LRK T LTK FL+HLY Sbjct: 121 GYCQPILHAGPLRLSLDSREVTVNGRPVHLTGKEYLVLELLLLRKGTVLTKYAFLDHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICK+RKKL A G + I TVWG+GY+LR + Sbjct: 181 GMDEPEMKIIDVFICKVRKKLQQAGAG-SLIATVWGQGYMLRGDG 224 >gi|330991888|ref|ZP_08315837.1| Cell cycle transcriptional regulator CtrA [Gluconacetobacter sp. SXCC-1] gi|329760909|gb|EGG77404.1| Cell cycle transcriptional regulator CtrA [Gluconacetobacter sp. SXCC-1] Length = 241 Score = 221 bits (562), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 106/225 (47%), Positives = 148/225 (65%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+E + ++ F V D G D + + K Y +D ++++ L D+ GF Sbjct: 1 MRILLVEPNARKVEETTRHMEKAGFTVDHVDTGHDALGMLKSYNYDLAVMNVDLPDVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R R A++ TPV +L+ S KVR +GADDY+++P+ EL AR++A++RRS+ Sbjct: 61 EVIRISRAARVPTPVMVLAEEKSATAKVRAFSTGADDYVTRPYESMELTARMQAVIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+++ + G L + L ++ V V G +HLTGKEY ++ELL LRK LTK+ FLNHLY Sbjct: 121 GYSEPTLRAGHLELCLGSREVSVHGQGVHLTGKEYMILELLLLRKGMVLTKDAFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEPE+KIIDVFICKLRKKL A G+ I TVWG+GYVLR+ A Sbjct: 181 GMDEPEMKIIDVFICKLRKKLQGAGAGQ-LIATVWGQGYVLRDEA 224 >gi|329113823|ref|ZP_08242594.1| Cell cycle response regulator CtrA [Acetobacter pomorum DM001] gi|326696833|gb|EGE48503.1| Cell cycle response regulator CtrA [Acetobacter pomorum DM001] Length = 261 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 107/235 (45%), Positives = 154/235 (65%), Gaps = 1/235 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+E++ + +I L +F+V + ++ IEL + Y++ IL L DI G+ Sbjct: 1 MRILLLENNCTSSRAIFSALTKASFSVDMVQCDQEVIELLRNYDYGLAILHLQHPDIHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR K++TPV ++S +++ E K + GADDY++ PF+ EL ARI+AI+RR Sbjct: 61 DILSTLRSLKLTTPVIVISPVNNPEVKTKAFTVGADDYLTDPFDSTELTARIQAILRRVH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A ++ G+L+VN ++ V V +HLTGKE+ ++ELL LRK TKE FLNHLY Sbjct: 121 GYAHPIVHIGNLTVNFNSHAVTVNNQPVHLTGKEFAILELLVLRKGIAQTKETFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 GRDEP++KIIDVFICKLRKKL A G N I TVWG+GY+L + + C + T Sbjct: 181 GRDEPDIKIIDVFICKLRKKLQTAGVG-NLISTVWGKGYILNDPQAPKACVSMPT 234 >gi|119386803|ref|YP_917858.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377398|gb|ABL72162.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 184 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/179 (62%), Positives = 147/179 (82%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A SIELML + ++NVY TD+GE+GI+L K Y++D I+LDL L D+ G Sbjct: 1 MRILLVEDDPTTARSIELMLTNASYNVYRTDMGEEGIDLAKLYDYDLILLDLDLPDMHGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R+++I TP+ IL+G E K+RG GADDY++KPFN++ELVARI+AI+RRS+ Sbjct: 61 EVLRQIRMSRIDTPILILTGSDDTESKLRGFGFGADDYMTKPFNRDELVARIQAIIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GH+QS+I TG++ VNLDA++VEV G ++LTGKEYQ++ELLSLRK TTLTKEMFLNH Y Sbjct: 121 GHSQSVIRTGEMVVNLDARSVEVGGRAVNLTGKEYQILELLSLRKGTTLTKEMFLNHFY 179 >gi|294083655|ref|YP_003550412.1| winged helix family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292663227|gb|ADE38328.1| two component transcriptional regulator, winged helix family [Candidatus Puniceispirillum marinum IMCC1322] Length = 234 Score = 201 bits (510), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 97/231 (41%), Positives = 148/231 (64%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++EDD +A I + L V E + + DA++LD+ L D G Sbjct: 1 MNILIVEDDPVIADVIGMTLDEAGHFSTVAHTIEASLAELRHNRIDAVLLDINLPDGNGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ ++SG S I+DK+ L +GAD Y++KPF++ EL+A + AI+RR+ Sbjct: 61 RLARLIRKHHLPMPILVVSGNSGIDDKIAALGAGADGYLTKPFDRYELMANLDAIIRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +++ G+L+V+L ++ +++LTGKE++++E L+LRK + L+K+ FLNHLY Sbjct: 121 GHSSAVVTAGNLTVDLSRNYAKIGDKQLNLTGKEFRIVEFLALRKGSVLSKDAFLNHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 G DEPE KIIDVF+CKLR+KL NA I+TVWG+GY+LRE E E Sbjct: 181 GIDEPEPKIIDVFMCKLRRKLDNAGASGLNIDTVWGQGYILRETPDFEIAE 231 >gi|23007529|ref|ZP_00049361.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 122 Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 95/117 (81%), Positives = 104/117 (88%) Query: 112 IRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + AIVRRS+GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTK Sbjct: 1 MHAIVRRSKGHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTK 60 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 EMFLNHLY G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE + E Sbjct: 61 EMFLNHLYGGMDEPELKIIDVFICKLRKKLANASEGKNYIETVWGRGYVLREPVEGE 117 >gi|99034436|ref|ZP_01314439.1| hypothetical protein Wendoof_01000759 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 156 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 85/133 (63%), Positives = 111/133 (83%), Gaps = 1/133 (0%) Query: 97 DYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQ 156 DY++KPF+K EL+ARI+AIVRR++GH +S+I G++++N D + VEV+G +HLT KEY Sbjct: 1 DYLTKPFHKSELLARIKAIVRRTKGHPESVIKIGNININFDHRVVEVKGKTVHLTNKEYS 60 Query: 157 MIELLSLRKNTTLTKEMFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVW 215 MIELL+LRK T LTKEMFLNHLY+G DEP + KI+DVF+CKLRKKL +A GK++IETVW Sbjct: 61 MIELLALRKGTVLTKEMFLNHLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVW 120 Query: 216 GRGYVLRENAKDE 228 GRGYVL+E D+ Sbjct: 121 GRGYVLKEYIDDD 133 >gi|24475509|dbj|BAC22721.1| czcR [Wolbachia endosymbiont of Callosobruchus chinensis] Length = 183 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 93/183 (50%), Positives = 127/183 (69%), Gaps = 4/183 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSE-NFNVYVTDLGEDGIELCKFYE--FDAIILDLGLT-D 56 MRILLIEDD+ A ++ L S+ +F VT + + E +D +ILD+ L D Sbjct: 1 MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNEDYYDLVILDIHLPGD 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 I G+++L LR AKI PV ILS +S++ K +GL GADDY++KPF+K EL+AR +AIV Sbjct: 61 IDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARXKAIV 120 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RR++GH +S+I G++++N D + VE +G +HLT KEY MIELL+LRK T LTKEMFLN Sbjct: 121 RRTKGHPESVIKIGNININFDHRIVEXKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLN 180 Query: 177 HLY 179 HLY Sbjct: 181 HLY 183 >gi|332140773|ref|YP_004426511.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii str. 'Deep ecotype'] gi|327550795|gb|AEA97513.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii str. 'Deep ecotype'] Length = 224 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 139/224 (62%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD L ++ +L+ ++V + D GE + L K Y++D I+D+G+ + GF Sbjct: 1 MRILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYDYDLAIVDIGMPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R R A IS P+ IL+ ++KV GL +GADDY++KPF+ EEL+AR +A++RR+ Sbjct: 61 EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A I G +S++ ++ + + G + LT EY+++E L L ++K H+YD Sbjct: 121 GQANPTIQFGPISLDTVSEELSINGKALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +I+VF+ +LRKKL + AG IET+ GRGY + N Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPAGDLKPIETLRGRGYRINRN 223 >gi|332296285|ref|YP_004438208.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] gi|332179388|gb|AEE15077.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] Length = 225 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/223 (41%), Positives = 140/223 (62%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA+ I+ + E + V VT GEDG+ K +DAI+LD+ L I G Sbjct: 4 MRLLIVEDEKTLANLIKKGFEEEGYAVDVTYNGEDGLFFAKNNIYDAIVLDIMLPIIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR ISTPV IL+ S++DKV GL SG+DDY++KPF+ EEL++R+RA++RR Sbjct: 64 SLLKELREQNISTPVIILTAKDSVKDKVLGLDSGSDDYLTKPFSFEELLSRVRALIRRRF 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL ++ KT++ RI L+ KEY ++E L+L KN +++ + HLYD Sbjct: 124 ATSSPIIKISDLVIDTAQKTIKRGNKRIDLSAKEYALLEYLALNKNKVISRTSIIEHLYD 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +IDVFI ++R K+ + K I T G GY L+E Sbjct: 184 EDFDLYSNVIDVFINRIRNKI-DKDFDKKLIHTYRGIGYSLKE 225 >gi|256822630|ref|YP_003146593.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796169|gb|ACV26825.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 224 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 139/224 (62%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD AL + LK++N+ V GE+ + L + YEFD I DLGL DI G Sbjct: 1 MKLLLVEDDDALREQLVSALKAQNYVVEEAPNGEEALYLAREYEFDLGIFDLGLPDISGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ +LR I PV IL+ +DKV GL +GADDY+ KPF EEL+ARI A++RR+ Sbjct: 61 DVITSLRDEDIQFPVLILTARGHWQDKVDGLAAGADDYLVKPFQTEELLARINALLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A+ IV G +S+N + V+V G + LT EY+++E L L + ++K HLY Sbjct: 121 GYAKPEIVKGPISLNSLKQEVKVNGEVMDLTAYEYKVLEYLMLNPDKVVSKTELTEHLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++VF+ +LRKK+ + G I+T+ GRGY LR + Sbjct: 181 QDYDRDSNVLEVFVGRLRKKI-DPDGTIQPIDTLRGRGYRLRAD 223 >gi|114562310|ref|YP_749823.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114333603|gb|ABI70985.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 227 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 137/227 (60%), Gaps = 1/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +I+ L + V V GE+G+ + Y++D I+D+GL + G Sbjct: 1 MRLLLVEDDLALQANIKQHLIDAQYTVDVASDGEEGLFQAQEYQYDVAIIDVGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR IS P+ IL+ S +DKV GL +GADDY+SKPF EELVARI A++RRS Sbjct: 61 SLISKLREQDISYPIIILTARDSWQDKVVGLDAGADDYLSKPFQLEELVARINALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + ++ I+L+G EY++ E L L + +K + H+YD Sbjct: 121 GKASPVIQNGPFSINTRSLEIKKSLQIINLSGSEYKLFEYLMLHPGSVHSKSSLIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +I+VFI +LRKKL + IET+ G+GY LR+ A D Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNQYQLIETLRGQGYRLRQLAPD 226 >gi|221134973|ref|ZP_03561276.1| response regulator in two-component regulatory system with PhoQ [Glaciecola sp. HTCC2999] Length = 224 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 91/225 (40%), Positives = 139/225 (61%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L ++ +L+ F+V + D GE L K Y +DA++LDLG+ + G Sbjct: 1 MRILLVEDDSQLLMQLDQLLQQAGFSVDLADDGEKAQYLLKEYTYDAVVLDLGIPKVDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R I TPVCIL+ + E KV GL +GADDY++KPF+ +EL+AR+ A++RRS Sbjct: 61 SVLKFARENDIKTPVCILTARDTWEQKVLGLDAGADDYLTKPFHHQELLARVNALIRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G + ++L + V++ + LT EY+++E L L ++ ++K H+YD Sbjct: 121 GHASSELTCGPIQLHLTQQKVKIDDQELELTAYEYKVLEYLMLNRDKVISKTELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +I+VF+ +LRKK+ K IET+ GRGY L A Sbjct: 181 QDFDLDSNVIEVFVGRLRKKIDPTNTLKP-IETLRGRGYRLFSPA 224 >gi|168179997|ref|ZP_02614661.1| cell cycle transcriptional regulator CtrA [Clostridium botulinum NCTC 2916] gi|182668954|gb|EDT80930.1| cell cycle transcriptional regulator CtrA [Clostridium botulinum NCTC 2916] Length = 223 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ LA+S+++ L+ F++ V++ G DG E E+D I+LDL L DI G Sbjct: 1 MRLLIIEDNIELANSMKMGLEKMGFHIDVSNTGSDGEEKASINEYDVILLDLNLPDIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR I TPV I++ +E GL +GADDYI+KPF EL ARI AI+RR Sbjct: 61 EILNYLRSESIETPVIIITARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRFH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +I G L +N +TVE++ + L KE+ ++E + R ++ E H+YD Sbjct: 121 GRTNPIINIGKLQLNPITRTVEIENKPVALVSKEFDILEYICYRHPAVVSSEEIAEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++ V I +L+KKLSNA+ GK + + G+GYVL Sbjct: 181 ENFDPFSSVLRVHIARLKKKLSNAS-GKEILINIRGKGYVL 220 >gi|149195385|ref|ZP_01872470.1| response regulator receiver domain protein (CheY-like) [Caminibacter mediatlanticus TB-2] gi|149134476|gb|EDM22967.1| response regulator receiver domain protein (CheY-like) [Caminibacter mediatlanticus TB-2] Length = 222 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 142/219 (64%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDDK LA IE LK +NF V V + GE+G+ L + ++D +I+D L + G Sbjct: 1 MKVLLVEDDKKLAKIIEKGLKRQNFRVDVAEDGEEGLYLARNNKYDVMIIDWMLPKLSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ LR I+TP IL+ S ++DKV GL S ADDY++KPF EEL+AR++A+ RR++ Sbjct: 61 DLIKTLRKEDINTPTLILTAKSDLDDKVEGL-SVADDYLTKPFEFEELIARLKALFRRNK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++I GDL +NLD K V+ G I LT K++++++LL + KN +T EM +L++ Sbjct: 120 KLPENIIKVGDLEMNLDTKEVKRAGKPIELTAKQFELLKLLMINKNKIVTPEMIEENLWE 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E + +I I LRKK+ + K ++T+ G GY Sbjct: 180 MNEERDSNVITAHISYLRKKI-DKGFDKELLKTIRGMGY 217 >gi|170756446|ref|YP_001780968.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121658|gb|ACA45494.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 223 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ LA+S+++ L+ F++ V++ G DG E E+D I+LDL L DI G Sbjct: 1 MRLLIIEDNIELANSMKMGLEKMGFHIDVSNTGSDGEEKASINEYDVILLDLNLPDIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR I TPV I++ +E GL +GADDYI+KPF EL ARI AI+RR Sbjct: 61 EILNYLRSESIETPVIIVTARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRFH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +I G L +N +TVE++ + L KE+ ++E + R ++ E H+YD Sbjct: 121 GRTNPIINIGKLQLNPITRTVEIENKPVALASKEFDILEYICYRHPAVVSSEEIAEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++ V I +L+KKLSNA+ GK + + G+GYVL Sbjct: 181 ENFDPFSSVLRVHIARLKKKLSNAS-GKEILINIRGKGYVL 220 >gi|307822689|ref|ZP_07652920.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307736293|gb|EFO07139.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 225 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 137/221 (61%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L I+ + F V G+DG + K Y DA ++D+GL D G Sbjct: 1 MRILVVEDEVKLCEQIQQFFADKGFAVDTAHTGQDGYYMGKEYPIDAAVIDIGLPDFSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ LR K++ P+ IL+ S ++KV GL++GADDY+ KPF+ EEL ARI A++RRS Sbjct: 61 ELIKRLRKDKVTVPILILTARSRWQEKVEGLEAGADDYLVKPFHYEELQARINALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ ++ ++ A+ V V G + LT EY+++E L RK ++K + H+YD Sbjct: 121 GVAHPVLTHDNIELDTVAQEVTVSGVKQELTAYEYKVLEYLMFRKGEVVSKSVLTAHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++VFI +LRKKL + G + IET+ GRGY++ Sbjct: 181 EDFDRDSNVLEVFIGRLRKKL-DPDGTRKPIETLRGRGYLI 220 >gi|163751031|ref|ZP_02158262.1| DNA-binding response regulator [Shewanella benthica KT99] gi|161329192|gb|EDQ00191.1| DNA-binding response regulator [Shewanella benthica KT99] Length = 237 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 138/230 (60%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L ++++ L NF + V GEDG+ Y +DA I+D+GL + G Sbjct: 1 MRILLVEDDIELQNNLKQHLLDANFTLDVASDGEDGLFQGSEYIYDAAIIDIGLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ LR +I P+ IL+ S +DKV GL +GADDY++KPF+ EEL+AR+ A++RRS Sbjct: 61 ELITKLREQEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELIARLNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L+ G S+N V+ G ++L+ EY++ E L +K + + H+YD Sbjct: 121 GKASPLVYNGPFSINTSTLEVKKSGQLMNLSSSEYKLFEFFMLHPGEVKSKTVLIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKL--SNAAGGKNYIETVWGRGYVLRENAKDE 228 + + +I+VFI +LRKKL N G IET+ G+GY L+ A+ E Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQLG---LIETLRGQGYRLKPLARGE 227 >gi|209883402|ref|YP_002287259.1| FeuP protein [Oligotropha carboxidovorans OM5] gi|209871598|gb|ACI91394.1| FeuP protein [Oligotropha carboxidovorans OM5] Length = 221 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 136/221 (61%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +A ++ L+ + V V GE L + ++DAI+LDLGL + G Sbjct: 1 MRVLVVEDEPRIAADLKKALERTLYAVDVAHDGEKAWFLGETEDYDAIVLDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR A ++TP+ IL+ +KV G+ +GADDY++KPF EEL+AR+ AI RR+ Sbjct: 61 SVLRRLREAGVTTPIVILTARDGWREKVEGINAGADDYLTKPFQMEELLARLGAITRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++I G+L V+ A+T + GH++ L+ EY+++ L + + TL++ L HL+D Sbjct: 121 GHASAIIKAGELEVDTRARTAMLSGHQLALSAMEYRLLAYLLMHRGRTLSQGELLEHLHD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + I+ I +LRKKL G IET GRGY + Sbjct: 181 GDTERDGNAIEALIARLRKKL-----GFPLIETHRGRGYCI 216 >gi|153938117|ref|YP_001390694.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152934013|gb|ABS39511.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318768|gb|ADF99145.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 223 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 133/221 (60%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ LA+S+++ L+ F++ V++ G DG E E+D I+LDL L DI G Sbjct: 1 MRLLIIEDNIELANSMKMGLEKMGFHIDVSNTGSDGEEKASINEYDVILLDLNLPDIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR I TPV I++ +E GL +GADDYI+KPF EL ARI AI+RR Sbjct: 61 EILNYLRSESIETPVIIVTARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRFH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +I G+ +N +TVE++ + L KE+ ++E + R ++ E H+YD Sbjct: 121 GRTNPIINIGNFQLNPITRTVEIENKPVALASKEFDILEYICYRHPAVVSSEEIAEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++ V I +L+KKLSNA+ GK + + G+GYVL Sbjct: 181 ENFDPFSSVLRVHIARLKKKLSNAS-GKEILINIRGKGYVL 220 >gi|24376120|ref|NP_720163.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24351154|gb|AAN57607.1|AE015896_5 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 231 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 138/222 (62%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +++ L ++++ V GE+G+ Y +DA I+D+GL + G Sbjct: 1 MRLLLVEDDVALQTNLKQHLLDAHYSIDVASDGEEGLFQAVEYNYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R +R + + P+ IL+ S +DKV GL +GADDY++KPF+ EELVAR++A++RRS Sbjct: 61 SLIRRIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + V +G + L+G EY++ E+ L + +K H+YD Sbjct: 121 GKASPIITNGPFSLNTSSLEVRKEGELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+VFI +LRKKL + N IET+ G+GY LR Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNQYNLIETLRGQGYRLR 221 >gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 223 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/224 (41%), Positives = 143/224 (63%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED+K LA++++ L+ E + V V GE+G L + Y +D IILD+ L + G Sbjct: 1 MKILLVEDEKLLANTLKKGLEEEGYIVDVAYDGEEGFFLGRCYGYDVIILDVMLPKLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + TP+ +L+ S+EDKV+GL SGADDY++KPF+ +EL+ARIRA++RR Sbjct: 61 ELLLKLREEGVKTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S I DL ++L+ K V+ G+ I LT KE++ + LL+L KN ++KE ++ LY Sbjct: 121 ESKTSFIKIKDLEIDLNKKIVKRAGNEIKLTKKEFKALTLLALNKNRVISKEFLIDSLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + I+V I +LRKK+ K I T+ G GY+++++ Sbjct: 181 TDRFVSINAIEVLINRLRKKIDKDYPLK-LIHTIKGFGYMIKDD 223 >gi|148260824|ref|YP_001234951.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|326404218|ref|YP_004284300.1| cell cycle response regulator CtrA [Acidiphilium multivorum AIU301] gi|146402505|gb|ABQ31032.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] gi|325051080|dbj|BAJ81418.1| cell cycle response regulator CtrA [Acidiphilium multivorum AIU301] Length = 250 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/199 (43%), Positives = 131/199 (65%), Gaps = 2/199 (1%) Query: 30 TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVR 89 TD+ E+ ++L +FYE+DA++L + T E++R LR+A + P+ ++ + S ++R Sbjct: 31 TDI-EEALDLTRFYEYDAVVLRVTDTRPAEIELIRRLRLAGLRCPIMAVAHLLSEATRLR 89 Query: 90 GLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH 149 L++G DD I + EE+ R++ VRRSRG S + G++ +N++AK + V I Sbjct: 90 ILEAGVDDLIVSAISHEEIFLRVQNQVRRSRGFQSSSLAVGNVEINMNAKKIFVSQTEIG 149 Query: 150 LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN 209 LT KEYQ++E+L+LRK L+KE L+HLY G DEP KIIDVFICK+RKKL AAG + Sbjct: 150 LTKKEYQIVEILALRKGCVLSKEAILDHLYGGLDEPNPKIIDVFICKIRKKLL-AAGADD 208 Query: 210 YIETVWGRGYVLRENAKDE 228 I+T WGRGY++ + + E Sbjct: 209 LIQTNWGRGYMIVDRRESE 227 >gi|257126116|ref|YP_003164230.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050055|gb|ACV39239.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 227 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 95/228 (41%), Positives = 143/228 (62%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K L I L+ E + V GE+ I + E+DAIILD+ L + GF Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R K P+ +L+ +I+DKV+GL GADDY+ KPF EEL+ARIR ++RR+ Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A ++I +L V+LDAKTV G I L+G+EY ++E L K L +E +H+++ Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E +IDV+I LRKK+ ++ K I T+ G GYVLR + ++E Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPK-LIHTIRGLGYVLRVDNENE 227 >gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. m3-13] Length = 225 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 94/225 (41%), Positives = 143/225 (63%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+K LA IEL L+ E FNV + G +G++L ++D I+LDL L + G E Sbjct: 3 RVLIIEDEKNLARFIELELQYEGFNVATSYDGREGLDLALKEDWDIILLDLMLPGLSGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK TP+ +L+ S+ DKV GL SGADDY+SKPF EEL+ARIRA+ RR G Sbjct: 63 VCRRIRAAK-ETPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALFRRMEG 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A +++ +L V+LDA+TV +I LT +E+ ++ + N LT+E+ L+ + Sbjct: 122 KKEEAHNILSFRELKVDLDARTVTRMEEQIELTKREFDLLVVFMTNINRVLTRELLLDKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E ++DV++ LR K+ + ++YI+TV G GYV+R+ Sbjct: 182 WELGSYAETNVVDVYVRYLRNKI-DKPSEESYIQTVRGTGYVMRK 225 >gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 227 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 137/219 (62%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++ LK E F V GE+G+ + + FD I+DLGL + G Sbjct: 1 MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGLPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ALR + PV IL+ SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A+VRR+ Sbjct: 61 ELIKALRDEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ ++ G ++++L A+TV V G + LT EY+++E L + ++K H+Y Sbjct: 121 GWSKPVLECGPVALDLAAQTVTVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +++VFI +LRKKL + G IETV GRGY Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DPEGELKPIETVRGRGY 218 >gi|241068623|ref|XP_002408489.1| sensory transduction histidine kinase, putative [Ixodes scapularis] gi|215492477|gb|EEC02118.1| sensory transduction histidine kinase, putative [Ixodes scapularis] Length = 158 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 83/158 (52%), Positives = 112/158 (70%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ +A+ IEL L SE +G +G+ L K +D +ILDL L DI GF Sbjct: 1 MRVLLIEDEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR AKI TP+ ILS ++ + K+ G SGADDY++KPF +EEL+ARI+AIVRRS+ Sbjct: 61 EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI 158 GHA S+ +SVNLDA++VEV G ++HLT KEY ++ Sbjct: 121 GHAASVFRFDKVSVNLDARSVEVNGKKVHLTNKEYAIL 158 >gi|239993470|ref|ZP_04713994.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii ATCC 27126] Length = 224 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 135/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD L ++ +L+ ++V + D GE + L K Y +D I+D+G+ + GF Sbjct: 1 MRILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYSYDLAIVDIGMPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R R A IS P+ IL+ ++KV GL +GADDY++KPF+ EEL+AR +A++RR+ Sbjct: 61 EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A I G +S++ ++ + + G + LT EY+++E L L ++K H+YD Sbjct: 121 GQANPTIQFGPISLDTVSEELSLNGQALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +I+VF+ +LRKKL + G IET+ GRGY Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPTGELKPIETLRGRGY 218 >gi|225848484|ref|YP_002728647.1| transcriptional activator protein CopR [Sulfurihydrogenibium azorense Az-Fu1] gi|225643352|gb|ACN98402.1| transcriptional activator protein CopR [Sulfurihydrogenibium azorense Az-Fu1] Length = 224 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 90/225 (40%), Positives = 142/225 (63%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDDK L+H I LK E F V E+G+ + E+D I+LD+ L + G+ Sbjct: 1 MKVLIIEDDKELSHLIAKRLKEEGFAVQQAFDAEEGMSYATYEEYDVIVLDIMLPKMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR K+ TP+ +LS IEDKV+GLQ GADDY++KPF+ EL+ARI A++RR++ Sbjct: 61 EVIRQLREKKVKTPILVLSAKGEIEDKVKGLQLGADDYLTKPFSFPELIARINALIRRTK 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S + DL+++L K V G +I+LT KE+++++ L +T+ M L +++ Sbjct: 121 TIEEISKLKYADLTIDLLKKEVYRNGKKINLTAKEFELLKYLVENSERIITRNMILENVF 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + + ++DV I +LR+K+ + K I TV G GYVL+ + Sbjct: 181 DIDFDIDSNVVDVHIHRLREKI-DKRFEKKLIHTVRGFGYVLKSD 224 >gi|260888931|ref|ZP_05900194.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] gi|260861378|gb|EEX75878.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] Length = 227 Score = 164 bits (415), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 93/228 (40%), Positives = 143/228 (62%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K L I LK E + V GE+ + + E+DAIILD+ L + GF Sbjct: 1 MRLLVVEDEKKLNELITKKLKKEYYGVDSCFDGEEAVRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R K P+ +L+ +I+DKV+GL GADDY+ KPF EEL+ARIR ++RR+ Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A +++ +L V+LDAKTV I L+G+EY ++E L K L++E +H+++ Sbjct: 121 GNADNVVTIANLKVDLDAKTVFRDDLLIKLSGREYSILEYLIRNKGKILSRERIEDHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E +IDV+I LRKK+ ++ K I T+ G GYVLR + ++E Sbjct: 181 YDYEGGTNVIDVYIRYLRKKIDDSYTPK-LIHTIRGLGYVLRVDNENE 227 >gi|294055543|ref|YP_003549201.1| two component transcriptional regulator, winged helix family [Coraliomargarita akajimensis DSM 45221] gi|293614876|gb|ADE55031.1| two component transcriptional regulator, winged helix family [Coraliomargarita akajimensis DSM 45221] Length = 222 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 134/222 (60%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ L ++ L+ E F GE+G+ +++DAI+LD+ L I G+ Sbjct: 1 MRVLVIEDEAELRETVVETLREEGFATDYCGDGEEGLYKALHWDYDAILLDIMLPKINGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R A+ TPV +L+ I+D+++GL GADDY+ KPF+ E++AR RAI RRS Sbjct: 61 EVLKRIRDAQKETPVMMLTARDGIDDRIKGLNQGADDYLPKPFDLAEMIARTRAIARRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G++ VN ++ V + G I LT +EY + EL + + +T++ HL+D Sbjct: 121 GQRNPELRIGNVIVNTTSRQVTLNGQPIELTAREYALTELFVRKVDEVVTRDYIYEHLFD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I+DV+I KLR+KL GK +I T+ G GY+ R Sbjct: 181 ENEDSLSNILDVYIYKLRQKL-----GKQFIRTMRGHGYITR 217 >gi|262274262|ref|ZP_06052073.1| putative transcriptional regulatory protein PhoP [Grimontia hollisae CIP 101886] gi|262220825|gb|EEY72139.1| putative transcriptional regulatory protein PhoP [Grimontia hollisae CIP 101886] Length = 224 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 134/221 (60%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H ++ L V+ +G+ + K Y D I+DLGL D G Sbjct: 1 MRILIVEDDPLLSHHLKTELSELGHQVHCAQTAYEGLFVAKEYPNDIAIVDLGLPDRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R +R A I P+ IL+G ++ +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 SLIRDIRRADIRMPILILTGRANWQDKVSGLDAGADDYLVKPFQKEELVARLNALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G ++++L AK V + G + LT EY ++E L ++K+ L+ LY Sbjct: 121 GFVKPEIRAGKITIDLLAKKVSIDGQSVELTAFEYDLLEYLVRYNRQVVSKQRLLDVLYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + I+V + +LRKKL+ AG +N I TV G+GY+ Sbjct: 181 DQ-EGDPNTIEVMMSRLRKKLTQ-AGQENPISTVRGQGYIF 219 >gi|114331353|ref|YP_747575.1| two component transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114308367|gb|ABI59610.1| two component transcriptional regulator, winged helix family [Nitrosomonas eutropha C91] Length = 228 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 141/219 (64%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ L + I L++ + V + GE+G+ L Y +A I+D+GL+ G Sbjct: 1 MRILVIEDEFLLQNQIRQQLEAAGYMVDTCNNGEEGLFLATEYRLNAAIIDIGLSGKSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++ALR P+ IL+ SS +DKVRGL++GADDY++KPF EEL AR++A++RR+ Sbjct: 61 DVIKALRQRGSLLPILILTARSSWQDKVRGLETGADDYLTKPFQMEELQARVKALLRRAN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+L+ G ++V++ A+ V + G I LT EY+++E L + L+K++ + LY Sbjct: 121 GIPQTLLECGPIAVDMTAQQVSINGVNIELTSFEYRLLEELVRHRGEVLSKQILADALYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +++V I +LR+KL + AG IET+ GRGY Sbjct: 181 HDEDRDSNVLEVMIGRLRRKL-DPAGTLKPIETMRGRGY 218 >gi|83594517|ref|YP_428269.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577431|gb|ABC23982.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 229 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 135/221 (61%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA ++ +L+ F V + D GE+ + L + FDA++LDLGL + G Sbjct: 1 MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A I PV IL+ +KV G ++GADDY++KPF EE+V R++A++RR+ Sbjct: 61 GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + +V G L ++ + V+G + LT +EY+++ L LR+ T+++ ++H+YD Sbjct: 121 GHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +IDV + +LR+KL G I TV G GY L Sbjct: 181 RDSDRDSNVIDVLVGRLRRKL-----GAPLIHTVRGLGYRL 216 >gi|157376378|ref|YP_001474978.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318752|gb|ABV37850.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 231 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 139/231 (60%), Gaps = 1/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L +++ L N+N+ V D GE G+ Y +DA I+D+GL + G Sbjct: 1 MRVLLVEDDIELQTNLKQHLVDANYNIDVADDGEIGLFQGTEYRYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR +I P+ IL+ S +DKV GL +GADDY++KPF+ EELVAR++A++RRS Sbjct: 61 ALIKTLREQEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G S+N + ++ I L+G EY++ E L ++K + H+YD Sbjct: 121 GKASPVVNNGPFSINTSSLEIKKGDVVITLSGTEYKLFEYFMLHPGEVISKTVLTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + + +I+VFI +LRKKL + + IET+ G+GY L + K E + Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNSFSLIETLRGQGYRLTQMQKTEQSD 230 >gi|114049392|ref|YP_739942.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113890834|gb|ABI44885.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 227 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 139/228 (60%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +++ L ++++ V GE+G+ Y +DA I+D+GL + G Sbjct: 1 MRLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLYQAIEYNYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R +R + + P+ IL+ S +DKV GL +GADDY++KPF+ EELVAR++A++RRS Sbjct: 61 SLIRRVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + V + L+G EY++ E+ L + +K H+YD Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + +I+VFI +LRKKL + N IET+ G+GY LR + DE Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNQYNLIETLRGQGYRLRVISPDE 227 >gi|113972144|ref|YP_735937.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|113886828|gb|ABI40880.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] Length = 227 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 139/228 (60%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +++ L ++++ V GE+G+ Y +DA I+D+GL + G Sbjct: 1 MRLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLYQAIEYNYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R +R + + P+ IL+ S +DKV GL +GADDY++KPF+ EELVAR++A++RRS Sbjct: 61 SLIRRVREKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + V + L+G EY++ E+ L + +K H+YD Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + +I+VFI +LRKKL + N IET+ G+GY LR + DE Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNQYNLIETLRGQGYRLRVISPDE 227 >gi|91792622|ref|YP_562273.1| response regulator receiver [Shewanella denitrificans OS217] gi|91714624|gb|ABE54550.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 243 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 142/223 (63%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +++ L++ N+++ + GE G+ + +DA I+D+GL + G Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR ++S P+ +L+ S +DKV GL +GADDY++KPF+ EEL+AR++A++RR+ Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G A SL+ G SVNL ++EV+ H ++L+ EY++ E L L +K + H+ Sbjct: 121 GKASSLVSNGPFSVNL--TSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHI 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 YD + + +I+VFI +LRKKL + IET+ G+GY L Sbjct: 179 YDQDFDLDSNVIEVFIRRLRKKL-DPDNQYQLIETLRGQGYRL 220 >gi|212636326|ref|YP_002312851.1| DNA-binding response regulator [Shewanella piezotolerans WP3] gi|212557810|gb|ACJ30264.1| DNA-binding response regulator [Shewanella piezotolerans WP3] Length = 233 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +++ L + N+ V D GE G+ K Y +DA I+D+GL + G Sbjct: 1 MRLLLVEDDLALQSNLKQHLLAANYTVDTADDGEIGLFQGKEYNYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR I P+ IL+ S +DKV GL +GADDY++KPF+ EELVAR++A++RRS Sbjct: 61 ALITELRALTIEFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + + G I L+G EY+++E L +K + H+YD Sbjct: 121 GKASPVINNGPFSLNTSSLELTKNGELISLSGSEYKLLEYFMLHIGEVKSKTVLTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+VFI +LRKKL +A IET+ G+GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DADNQLGLIETLRGQGYRL 220 >gi|88608551|ref|YP_506128.1| DNA-binding response regulator [Neorickettsia sennetsu str. Miyayama] gi|88600720|gb|ABD46188.1| DNA-binding response regulator [Neorickettsia sennetsu str. Miyayama] Length = 265 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 134/230 (58%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF----YEFDAIILDLGLTD 56 MRIL+++D++ + ++ ++ S + D L Y++D IILD L D Sbjct: 1 MRILVVDDEQKVTDYVKSIITSVGYVCDTASCCRDASALINSSKGDYQYDLIILDRVLPD 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP-FNKEELVARIRAI 115 G +++ LR I TPV S +SS E++++ GADD+I+K +K E +ARIRA+ Sbjct: 61 GDGLDMILNLRCKNIKTPVIFFSALSSYENRIKAFDFGADDFIAKSELHKGEFLARIRAV 120 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR-KNTTLTKEMF 174 +RR H S G++ V+ + +++G + LT KEY M+EL+ L + ++K+ F Sbjct: 121 LRRCFSHHFSKFKLGNMLVDFHMQVCKMRGKVVQLTNKEYSMLELMCLHGRGAIISKDKF 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++HLY + E KIIDVF CKLR KL+ G +YIETVWGRGY L EN Sbjct: 181 ISHLYSNNEPTEQKIIDVFACKLRSKLAAYNDGVSYIETVWGRGYTLNEN 230 >gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1] gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11] gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp. D11] gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1] gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp. D11] Length = 224 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L + I LK NF+V GE+ +E + +D IILD+ L + G+ Sbjct: 1 MKILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K TPV +L+ +IEDK++GL GADDY+ KPF+ EL+ARIRAIVRR Sbjct: 61 EVVKNLRTNKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL V+ K+V G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGNSKPLIHTKRGLGYVLKED 223 >gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] Length = 224 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L + I LK NF+V GE+ +E + +D IILD+ L + G+ Sbjct: 1 MKILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K TPV +L+ +IEDK++GL GADDY+ KPF+ EL+ARIRAIVRR Sbjct: 61 EVVKNLRANKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL V+ K+V G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGNSKPLIHTKRGLGYVLKED 223 >gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 138/223 (61%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K LA+ I+ + E F V + GEDG+ + Y +D I+LD+ L I G Sbjct: 1 MRILIVEDEKTLANLIKKGFEEEGFAVDIAYDGEDGLFFAQNYSYDCIVLDIMLPVIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR +TPV +L+ +++DKV GL SG+DDY++KPF+ EEL++R +A++RR Sbjct: 61 TILKKLRKQNNTTPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +L ++ KTV+ I L+ KEY ++E L+ KN L++ M + H+Y+ Sbjct: 121 EISSPIIKVDNLEIDTAKKTVKRANQPIELSAKEYALLEYLAANKNKVLSRTMIIEHIYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +IDVFI ++R K+ + K + T+ G GY L+E Sbjct: 181 EEFDFDSNVIDVFINRIRNKI-DKNFDKKLVHTIRGMGYALKE 222 >gi|116252811|ref|YP_768649.1| two component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257459|emb|CAK08555.1| putative two component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 222 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/221 (42%), Positives = 130/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ L+ I +L+SENF V + GED + FD ILDLGL I G Sbjct: 1 MRVLLVEDDEDLSGRIAAVLRSENFVVDIARNGEDALHAGLTELFDVAILDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R + PV +L+ DKV ++GADD+++KPF EELV R+RA+VRR+ Sbjct: 61 SVLKDWREGDRNLPVLVLTARDGWPDKVSSFKAGADDFLAKPFKVEELVLRLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S +V G L+ + T E+ G + LT E++++ L LRK + + +YD Sbjct: 121 GHAASRLVCGALTFDAQLGTFELDGLPLKLTALEWRVLSCLMLRKEMIVDRRELTERVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + I+V I +LRKKL G + IETV GRGY+L Sbjct: 181 GDAEVDSNSIEVIIARLRKKL-----GADRIETVRGRGYML 216 >gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas albilineans GPE PC73] gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas albilineans] Length = 227 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++ LK E F V GE+G+ + + FD I+DLGL + G Sbjct: 1 MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ALR PV IL+ SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ Sbjct: 61 ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + G ++++L A+TV V G + LT EY+++E L + ++K H+Y Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +++VFI +LRKKL + G IETV GRGY Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DPDGELKPIETVRGRGY 218 >gi|218509392|ref|ZP_03507270.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli Brasil 5] Length = 111 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 76/111 (68%), Positives = 95/111 (85%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111 EVLR LR++K+ TP+ ILSGM+ IEDKVRGL GADDY++KPF+K+ELVAR Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVAR 111 >gi|88797980|ref|ZP_01113567.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] gi|88779177|gb|EAR10365.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] Length = 225 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+++L ++ K E F V + G++G+ L K ++DA I+DLGL ++ G Sbjct: 1 MRLLIIEDEQSLLEHLQAGFKKEGFAVDTSTSGKEGLFLGKEADYDAAIIDLGLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+R LR A P+ +L+ DKV GL+SGADDY++KPF +EL+AR++A++RRS Sbjct: 61 DVIRELRAAGQDYPIIVLTARGHWRDKVDGLESGADDYLAKPFIFDELLARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G ++ AK+V V G + LT EY +E L KN ++K HLY+ Sbjct: 121 GMASSTLTIGLYELDTSAKSVRVDGRSVELTSYEYNTLEYLMTHKNKVVSKTELTEHLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +I+VFI +LRKKL + G +N I T G GY Sbjct: 181 QDYDRDSNVIEVFIRRLRKKL-DPDGERNPILTQRGLGY 218 >gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 799 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 135/229 (58%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD+ LA I+ LKS+++ V + G+ G+EL + +E+D I+LDL L + G Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + R TP+ +++G KV+ L +GADDY+ KPFN +EL+AR+RA++RR Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+ G L++N + V +G IHLT KEY ++EL +N ++ + HL+ Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + P + I LR+KL A N IETV+G GY L +N D+T Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKNVLDQT 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD L I+ L+ F++ + + + ++ + D +ILD+ + +I G E Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 + + +R P+ LSG + G Q+GADDYI KP ELV RI Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 >gi|254796619|ref|YP_003081455.1| DNA-binding response regulator CtrA [Neorickettsia risticii str. Illinois] gi|254589857|gb|ACT69219.1| DNA-binding response regulator CtrA [Neorickettsia risticii str. Illinois] Length = 264 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 134/230 (58%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF----YEFDAIILDLGLTD 56 MRIL+++D++ + ++ ++ S + D L Y++D IILD L D Sbjct: 1 MRILVVDDEQKVTDYVKSIITSVGYVCDTASCCRDASALINSSKGDYQYDLIILDRVLPD 60 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP-FNKEELVARIRAI 115 G +++ LR I TPV S +SS E++++ GADD+I+K +K E +ARIRA+ Sbjct: 61 GDGLDMILNLRCKNIKTPVIFFSALSSYENRIKAFDFGADDFIAKSELHKGEFLARIRAV 120 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR-KNTTLTKEMF 174 +RR H S G++ V+ + +++G + LT KEY M+EL+ L + ++K+ F Sbjct: 121 LRRCFSHHFSKFKLGNMLVDFHMQVCKMRGKVVQLTNKEYSMLELMCLHGRGAIISKDKF 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++HLY + E KIIDVF CKLR KL+ G +YIETVWGRGY L EN Sbjct: 181 ISHLYSNNEPTEQKIIDVFACKLRSKLAAYNDGVSYIETVWGRGYTLNEN 230 >gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia] gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 227 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++ LK E F V GE+G+ + + FD I+DLGL + G Sbjct: 1 MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ALR PV IL+ SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ Sbjct: 61 ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + G ++++L A+TV V G + LT EY+++E L + ++K H+Y Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVAGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +++VFI +LRKKL + G IETV GRGY Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DPDGELKPIETVRGRGY 218 >gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae] gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris] gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++ LK E F V GE+G+ + + FD I+DLGL + G Sbjct: 1 MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ALR PV IL+ SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ Sbjct: 61 ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + G ++++L A+TV V G + LT EY+++E L + ++K H+Y Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +++VFI +LRKKL + G IETV GRGY Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DPDGELKPIETVRGRGY 218 >gi|88859915|ref|ZP_01134554.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas tunicata D2] gi|88817909|gb|EAR27725.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas tunicata D2] Length = 224 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 133/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD LA ++ L+ E ++V + GE G+ Y D ++DLGL + G Sbjct: 1 MRILVIEDDLHLADNLRAALEKEKYSVDLAHDGESGLFHLTEYPLDLAVIDLGLPKMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ R + P+ IL+ +DKV GL +GADDY++KPF+ EEL+AR A++RRS Sbjct: 61 EVIKRARAQQAELPILILTARDRWQDKVEGLDAGADDYLTKPFHPEELIARCNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G + +N ++ V + + LTG EY+++E L + ++K H+YD Sbjct: 121 GQANPEMIAGPIRINTRSQQVWLNNIEVSLTGYEYRVLEYLMVNPQKVISKSELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+VF+ +LRKK+ + G N IET+ GRGY LR Sbjct: 181 QDFDLDSNVIEVFVLRLRKKI-DPDGTLNPIETLRGRGYRLR 221 >gi|257061994|ref|YP_003139882.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256592160|gb|ACV03047.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 224 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 132/224 (58%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A + LK + + V V + GE G +L + + +D I+LD+ L + G Sbjct: 1 MRVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + + PV +L+ + EDKV GL GADDY+ KPF+ EL ARIRA++RR Sbjct: 61 SLCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ LS+N + V +HLT KEY ++EL + L++ M L+HL+ Sbjct: 121 TSSSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + + V I +LRKKL N ++IETV+G GY L+++ Sbjct: 181 FEDPPSEEAVKVHIKELRKKLRNVGSLPDFIETVYGLGYRLKQH 224 >gi|162149190|ref|YP_001603651.1| two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209545067|ref|YP_002277296.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787767|emb|CAP57363.1| Two component Transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532744|gb|ACI52681.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 258 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 138/221 (62%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD +A + L+S F V + G DG+ FD +I+D L ++ G Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +LR ++STPV +LS +S+++D+V GL++G DDY++KPF EEL ARI A++RR Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++++ G LS++L +TV G I L +E++++E L R N LT+ M L +++ Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R P+ ++DV I KLR+K+ + G + I+++ G G++LR Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDD-PGAQPLIQSIRGTGFMLR 255 >gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like) [Mariprofundus ferrooxydans PV-1] gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like) [Mariprofundus ferrooxydans PV-1] Length = 227 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 138/224 (61%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ +AH I+ LK E V ++ GEDG L + ++D IILDL L G Sbjct: 1 MKILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDGEFLAEVNDYDLIILDLMLPKKNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + +STPV +L+ S+EDKVRGL +GADDY++KPF EEL+AR+RA++RR Sbjct: 61 VVCRELRASGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL ++ ++ V QG I LT KEY ++E L L++ + H++D Sbjct: 121 ESKSPVLKVADLELDPISRRVSRQGSSIRLTTKEYALLEYLMRNPGKVLSRTLIGEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +PE +IDV+I LR K+ + + + T+ G+GY+L ++ Sbjct: 181 MNFDPESNVIDVYISHLRSKI-DKGFDVSLLHTLRGQGYLLTDD 223 >gi|332993804|gb|AEF03859.1| response regulator in two-component regulatory system with PhoQ [Alteromonas sp. SN2] Length = 224 Score = 161 bits (408), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 134/224 (59%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD L ++ +L+ ++V + D GE + L Y +D I+D+GL + GF Sbjct: 1 MRILIAEDDSRLLTQLDSLLQQHGYSVDLADNGEHALYLLNEYAYDLAIIDIGLPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R R I PV IL+ ++KV GL +GADDY++KPF+ EEL+AR++A++RR+ Sbjct: 61 EVIRNARQEDIRCPVLILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARVKALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G +S++ A+ + V + LT EY+++E L L ++K H+YD Sbjct: 121 GQANPVIQFGPISLDTVAEEITVNDAPLELTAYEYKVMEYLMLNPQKVVSKTELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +I+VF+ +LRKKL K IET+ GRGY + N Sbjct: 181 QDFDLDSNVIEVFVGRLRKKLDPENSFKP-IETLRGRGYRINRN 223 >gi|159186289|ref|NP_355953.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159141423|gb|AAK88738.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 220 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 131/222 (59%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L+ I L++ENF V + GED +D ILDLGL I G Sbjct: 1 MRVLLVEDDGDLSKRIAANLRAENFVVDIAQNGEDAEHAGLTELYDVAILDLGLPRIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL++ R A+ + PV +L+ DKV ++GADD+++KPF EELV R+RA+VRR+ Sbjct: 61 SVLKSWRAAQRNLPVLVLTARDGWPDKVASFKAGADDFLTKPFKVEELVLRLRALVRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S++ G L + T E G + LTG E++++ L LRK + + + +Y+ Sbjct: 121 GHAASIVTCGSLVFDAQLGTFEQNGLPLKLTGLEWRVLSCLILRKEVVVDRRELIERVYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 G E + I+V I +LR+K+ G +IETV GRGY+L+ Sbjct: 181 GDAEVDSNSIEVIIARLRRKI-----GAEHIETVRGRGYMLK 217 >gi|30249380|ref|NP_841450.1| response regulator PhoP [Nitrosomonas europaea ATCC 19718] gi|30180699|emb|CAD85320.1| possible phoP; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Nitrosomonas europaea ATCC 19718] Length = 229 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 138/219 (63%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ L + I L++ + V + G++G+ L Y DA I+D+GL G Sbjct: 1 MRILVIEDEFRLQNQIRRQLEAAGYMVDTSSSGDEGLFLATEYRPDAAIIDIGLPGKSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ALR P+ IL+ SS +DKV+GL+ GADDY++KPF EEL AR+RA++RR+ Sbjct: 61 EIIKALRERGSLLPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELQARVRALLRRAV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+L+ G ++V++ A++V V G I LT EY+++E L + L+KE + LY Sbjct: 121 GIPQTLLKCGPIAVDVTAQSVSVDGANIELTSFEYRLLEELVCHRGEILSKESLADALYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +++V I +LR+KL + G IET+ GRGY Sbjct: 181 HNEDRDSNVLEVMIGRLRRKL-DPEGTLKPIETMRGRGY 218 >gi|218248934|ref|YP_002374305.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218169412|gb|ACK68149.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 224 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 131/224 (58%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A + LK + + V V + GE G +L + + +D I+LD+ L + G Sbjct: 1 MRVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + + PV +L+ + EDKV GL GADDY+ KPF+ EL ARIRA++RR Sbjct: 61 SLCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ LS+N + V +HLT KEY ++EL + L++ M L+HL+ Sbjct: 121 TSLSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + + V I +LRKKL N ++IETV+G GY L+++ Sbjct: 181 FEDPPSEEAVKVHIKELRKKLRNVGSLPDFIETVYGLGYRLKQH 224 >gi|15836991|ref|NP_297679.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|28199554|ref|NP_779868.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71274658|ref|ZP_00650946.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71899630|ref|ZP_00681784.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71901814|ref|ZP_00683880.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|170730925|ref|YP_001776358.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182682290|ref|YP_001830450.1| two component transcriptional regulator [Xylella fastidiosa M23] gi|9105223|gb|AAF83199.1|AE003890_8 two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|28057669|gb|AAO29517.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71164390|gb|EAO14104.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71728413|gb|EAO30578.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71730582|gb|EAO32659.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|167965718|gb|ACA12728.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182632400|gb|ACB93176.1| two component transcriptional regulator, winged helix family [Xylella fastidiosa M23] gi|307578567|gb|ADN62536.1| two component transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 227 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++ LK E F V GE+GI + + FD I+DLGL + G Sbjct: 1 MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGIYMGREVPFDVGIIDLGLPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ALR PV IL+ SS + KV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ Sbjct: 61 DLVKALRDEGKKFPVLILTARSSWQSKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + G ++++L A+TV V G + LT EY+++E L + ++K H+Y Sbjct: 121 GWSKPTLECGSVALDLAAQTVSVNGTNVDLTSYEYKVLEYLMVHAGELVSKADLTEHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +++VFI +LRKKL +A G IETV GRGY Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DADGDLKPIETVRGRGY 218 >gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 224 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 139/223 (62%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED+ L + I LK ++V GE+ ++ ++ E+D +ILD+ + + GF Sbjct: 1 MKILLAEDEIDLNNIITKYLKKNGYSVDSVLDGEEALDYLEYGEYDLVILDIMMPKVNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR T V +L+ S +DKV+GL GADDYI KPF+ EL+ARIRA+VRR Sbjct: 61 EVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G++ + ++ G+L +N K+V G +I LTGKEY+++E L KN L+++ H++D Sbjct: 121 GNSSNKLMIGNLVLNTSEKSVTRGGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + IIDV I +RKK+ + GGK I T G GYV+++ Sbjct: 181 FDYEGDSNIIDVLIKNIRKKI-DVEGGKQIIYTKRGLGYVIKD 222 >gi|301062846|ref|ZP_07203439.1| putative transcriptional activator protein CopR [delta proteobacterium NaphS2] gi|300443046|gb|EFK07218.1| putative transcriptional activator protein CopR [delta proteobacterium NaphS2] Length = 224 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 137/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD +A + LK F V V G DG+ L + +DA ++D+ L + G Sbjct: 1 MRILVVEDDPKIASFVANGLKEAGFAVDVAHDGVDGLHLGETEPYDAAMVDIMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 ++ LR KI+TPV ILS S++D+VRGLQ+G DDY++KPF+ EL+ARI A++RRS Sbjct: 61 TLIEKLREKKITTPVIILSAKRSVDDRVRGLQTGGDDYMTKPFSFSELLARIHALIRRST 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R S + G+L+++L + V+ G I L +E+ ++E L K ++K L H+Y Sbjct: 121 RVAEPSALSAGNLTLDLLTREVKRGGEEISLPAREFALLEHLVRNKGRIVSKTSILEHVY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ ++DV +C++R K+ + + I TV G GYVL+E Sbjct: 181 DYSFDPQTNVVDVLVCRVRNKV-DKDFDRKLIHTVRGMGYVLKEQ 224 >gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379] gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379] Length = 223 Score = 160 bits (406), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 138/223 (61%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L I LK N++V GE+ ++ + ++D II D+ + ++ G+ Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E ++ LR +K +TPV +L+ ++EDK+ GL SGADDYI KPF +EL ARIR ++RR+ Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I D+ +++ K V G I LTGKEY+++E L K + L+++ LNH++D Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I+DV I +RKKL N K I T G GY ++E Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGT-DKTIIYTKRGLGYFVKE 222 >gi|325914534|ref|ZP_08176878.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325539304|gb|EGD10956.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 227 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 134/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++ LK E F V GE+G+ + FD I+DLGL + G Sbjct: 1 MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGLEVPFDVGIIDLGLPKMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ALR PV IL+ SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ Sbjct: 61 ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + G ++++L A+TV V G + LT EY+++E L + ++K H+Y Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +++VFI +LRKKL + G IETV GRGY Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DPDGELKPIETVRGRGY 218 >gi|229826987|ref|ZP_04453056.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC 49176] gi|229788605|gb|EEP24719.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC 49176] Length = 225 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 132/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L ED+ L + L E F+V G + I+ +F ++D ILD+ L GF Sbjct: 1 MRLLYAEDEPDLNRIVTKKLAEEGFSVDSCFDGREAIDNIQFTDYDVAILDIMLPHADGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR K +TPV L+ SIED+V+GL SGA+DY+ KPF+ EEL+ARIR + R Sbjct: 61 AILKELRKLKKNTPVLFLTARDSIEDRVKGLDSGANDYLVKPFSFEELLARIRVMTREKH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++++ DL +NL + TV G I LT KEYQ++E L K L++E NH+++ Sbjct: 121 NLSENILTIADLCLNLSSHTVTRDGKEISLTSKEYQLLEYLMYNKEKVLSREKIENHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +IDV+I LRKK+ + K I TV G GYV+RE+ Sbjct: 181 YDYEGGTNVIDVYIRYLRKKIDDGFDTK-LIHTVRGAGYVIRED 223 >gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11] Length = 219 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/221 (42%), Positives = 134/221 (60%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ LA +EL L EN+NV G+DG++ + +D IILDL L I G E Sbjct: 3 QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALIHYYDLIILDLMLPSINGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + STP+ I++ S DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 63 ICRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ-- 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +I ++++ +A V V G I LT EY ++ LL+ KN + +E LNH++ Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL K IETV G GYV+R Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDK-MIETVRGVGYVIR 219 >gi|237740054|ref|ZP_04570535.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31] gi|294782859|ref|ZP_06748185.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA] gi|229422071|gb|EEO37118.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31] gi|294481500|gb|EFG29275.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA] Length = 224 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/224 (41%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K L + I LK NF+V GE+ +E + +D I+LD+ L + G+ Sbjct: 1 MRILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLDYGTYDLIVLDIMLPKVNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K T V +L+ SIEDK++GL GADDY+ KPF+ EL+ARIRA+VRR Sbjct: 61 EVIKKLRENKNETAVLMLTARDSIEDKIKGLDLGADDYLIKPFDFGELLARIRALVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL +++ KTV G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNTSNTMEIDDLCIDIAKKTVVRGGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YGYEGESNIIDVLIKNIRKKI-DIGNSKPLIHTKRGLGYVLKED 223 >gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ LA +EL LK E F+V+V G +G+EL ++D I+LD+ L + G E Sbjct: 4 RILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPSLNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK STP+ +++ S+ D+V GL +GADDYI KPF EEL+ARIRA+ RR Sbjct: 64 VCRRIRAAK-STPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + ++T DL V++ A+TV+ I LT +EY ++ N LT++ L+ ++ Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV++ LR+KL + + YI+TV G GYV+R Sbjct: 183 FDAEVETNVVDVYVRYLRQKL-DEHDKERYIQTVRGTGYVMR 223 >gi|262067099|ref|ZP_06026711.1| transcriptional activator protein Irlr [Fusobacterium periodonticum ATCC 33693] gi|291379153|gb|EFE86671.1| transcriptional activator protein Irlr [Fusobacterium periodonticum ATCC 33693] Length = 224 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 138/224 (61%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K L + I LK NF+V GE+ +E ++ +D I+LD+ L + G+ Sbjct: 1 MRILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLEYGTYDLIVLDIMLPKLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K T V +L+ SI+DK++GL GADDY+ KPF+ EL+ARIRA+VRR Sbjct: 61 EVVKKLRENKNETAVLMLTARDSIDDKIKGLDLGADDYLIKPFDFGELLARIRALVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL +++ KTV G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNTSNTMEIDDLCIDIAKKTVVRAGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YGYEGESNIIDVLIKNIRKKI-DVGNSKPLIHTKRGLGYVLKED 223 >gi|307154447|ref|YP_003889831.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984675|gb|ADN16556.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 224 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 133/224 (59%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A+++ LK + V + GE G + + + +D IILD+ L + G Sbjct: 1 MRILLVEDDERIANALAETLKDRQYLVDLAFDGEKGWDFIQSFSYDLIILDVMLPKLSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR TPV +L+ + DKV+GL +GADDY+ KPF+ EL ARIRA++RRS Sbjct: 61 ALCQRLRDTGYMTPVLMLTARDTSRDKVKGLDAGADDYVVKPFDLPELAARIRALLRRSN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L +N ++ V GH +HLT KEY+++EL + L++ L+HL+ Sbjct: 121 TTLPPVLEWENLRLNPNSCEVNYAGHPLHLTPKEYKLLELFLRNTHLVLSRSQILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + + V I +LRKKL + IETV+G GY L+++ Sbjct: 181 FEDPPSEEAVKVHIKELRKKLKAVGASPDLIETVYGLGYRLKQS 224 >gi|94498224|ref|ZP_01304785.1| two-component response regulator [Sphingomonas sp. SKA58] gi|94422354|gb|EAT07394.1| two-component response regulator [Sphingomonas sp. SKA58] Length = 221 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 133/226 (58%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L H + L+ + V + GEDG L +DA++LDLGL I G Sbjct: 1 MRLLIVEDEPSLGHQLRTTLEGAGYAVDLATDGEDGHFLGSTESYDAVVLDLGLPTIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRKEGKTFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + GD+ ++ + V ++G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGDPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL G + I T+ G GY L E + Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GADVITTIRGLGYSLDEPGR 221 >gi|241205325|ref|YP_002976421.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859215|gb|ACS56882.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 229 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 95/231 (41%), Positives = 131/231 (56%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ L+ I +L+SENF V + GED + FD ILDLGL I G Sbjct: 1 MRVLLVEDDEDLSGRIAAVLRSENFVVDIARNGEDALHAGLTELFDVAILDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R + PV +L+ DKV ++GADD+++KPF EELV R+RA+VRR+ Sbjct: 61 SVLKGWREGDRNLPVLVLTARDGWPDKVSSFKAGADDFLAKPFKVEELVLRLRALVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S +V G L + T E+ G + LT E++++ L LRK + + +YD Sbjct: 121 GHAASRLVCGALVFDAQLGTFELDGLPLKLTALEWRVLSCLMLRKEMIVDRRELTERVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGG------KNYIETVWGRGYVLRENA 225 G E + I+V I +LRKKL GG + IETV GRGY+L A Sbjct: 181 GDAEVDSNSIEVIIARLRKKL----GGERIETMRGRIETVRGRGYMLTAAA 227 >gi|171319841|ref|ZP_02908923.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171094903|gb|EDT39933.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 223 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 139/225 (61%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEPKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR K TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQK-QTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +A+ L+ DL V+L + V +RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNARDLLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ NA K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223 >gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ LA +EL LK E F+V+V G +G+EL ++D I+LD+ L + G E Sbjct: 4 RILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPRLNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK STP+ +++ S+ D+V GL +GADDYI KPF EEL+ARIRA+ RR Sbjct: 64 VCRRIRAAK-STPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + ++T DL V++ A+TV+ I LT +EY ++ N LT++ L+ ++ Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV++ LR+KL + + YI+TV G GYV+R Sbjct: 183 FDAEVETNVVDVYVRYLRQKL-DEHDKERYIQTVRGTGYVMR 223 >gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341] gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341] Length = 221 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 137/222 (61%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L I LK N++V GE+ ++ + E+D II D+ + ++ G+ Sbjct: 1 MKILVVEDERDLNRIITKHLKKNNYSVDSCFDGEEALDFVSYSEYDLIITDIMMPNVDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E + LR +K +TPV +L+ ++EDK+ GL SGADDYI KPF +EL+ARIR ++RR+ Sbjct: 61 EFIARLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I D+ +++ K V G I LTGKEY+++E L K + L+++ LNH++D Sbjct: 121 GLATNVIQVDDVVLDISKKQVLRNGQNIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I+DV I +RKKL N K I T G GY ++ Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGT-DKTIIYTKRGLGYFVK 221 >gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus subsp. aureus Mu50] gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus subsp. aureus MW2] gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus COL] gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122] gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus TCH130] gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus 55/2053] gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781] gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763] gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus A9719] gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299] gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus A8115] gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus A6224] gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948] gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus A5937] gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus ED98] gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117] gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus C160] gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus Btn1260] gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M899] gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139] gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427] gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101] gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765] gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102] gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19] gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus A017934/97] gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus 132] gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus 58-424] gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809] gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M1015] gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754] gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819] gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus MR1] gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796] gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus] gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus subsp. aureus Mu50] gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus subsp. aureus MW2] gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus COL] gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122] gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus TCH130] gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus 55/2053] gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781] gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763] gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus A9719] gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299] gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus A8115] gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus A6224] gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948] gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus ED98] gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20] gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101] gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427] gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139] gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M899] gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102] gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765] gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus C160] gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117] gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19] gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus A017934/97] gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981] gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M1015] gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus 58-424] gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809] gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754] gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819] gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796] gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus JKD6159] gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00] gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46] gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131] gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172] gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189] gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193] Length = 219 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 95/221 (42%), Positives = 134/221 (60%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ LA +EL L EN+NV G+DG++ + +D IILDL L I G E Sbjct: 3 QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + STP+ I++ S DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 63 ICRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ-- 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +I ++++ +A V V G I LT EY ++ LL+ KN + +E LNH++ Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL K IETV G GYV+R Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDK-MIETVRGVGYVIR 219 >gi|222106228|ref|YP_002547019.1| two component response regulator [Agrobacterium vitis S4] gi|221737407|gb|ACM38303.1| two component response regulator [Agrobacterium vitis S4] Length = 222 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ L+ I L+SENF V + GED + FD +LDLGL I G Sbjct: 1 MRVLLVEDDEDLSGRIATALRSENFVVDIARNGEDALHAGLTELFDIAVLDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R ++ + PV +L+ DKV ++GADD+++KPF EELV R+RA+VRR+ Sbjct: 61 TVLKGWRESERNLPVLVLTARDGWPDKVSSFKAGADDFLAKPFKIEELVLRLRALVRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G L + T E+ G + LT E++++ L LRK + + +YD Sbjct: 121 GHASSRIQCGALMFDAQLGTFELNGLPVKLTALEWRVLSCLMLRKEMVVDRRELNERVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + I+V I +LRKKL G IETV GRGY+L Sbjct: 181 GDAEVDSNSIEVIIARLRKKL-----GSEIIETVRGRGYML 216 >gi|56962170|ref|YP_173893.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908405|dbj|BAD62932.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 222 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 138/223 (61%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD A+A +EL LK E F + + + GE G+ +FD I+LD+ L I G E Sbjct: 3 RILLIEDDAAIARYLELELKHEGFELIIENDGEGGLAKALLEKFDVILLDVMLPKISGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR +K +TPV +L+ + DKV GL SGA+DY++KPF EEL+ARIR I R Sbjct: 63 VLRRLRKSKETTPVILLTAKGEVSDKVTGLDSGANDYMTKPFFIEELLARIRVIFREK-- 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + G+L++N D V V+G + LT KEY+++ L + +N L++E + +++ Sbjct: 121 TTNNSLHWGELTMNPDTYQVIVKGQELGLTKKEYELLYYLLVNRNIALSRENIIENVWGY 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + I+DVFI +R+KL + + I+T+ G GYV+++N Sbjct: 181 EYYGDTNIVDVFIKNIRRKLEDVMDVR-MIQTIRGIGYVIKDN 222 >gi|332715492|ref|YP_004442958.1| two component response regulator [Agrobacterium sp. H13-3] gi|325062177|gb|ADY65867.1| two component response regulator [Agrobacterium sp. H13-3] Length = 220 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L+ I L++ENF V + GED +D +LDLGL I G Sbjct: 1 MRILLVEDDTDLSRRIATSLRAENFVVDIAQNGEDAEHAGLTELYDVAVLDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL++ R A+ + PV +L+ DKV ++GADD+++KPF EELV R+RA+VRR+ Sbjct: 61 SVLKSWRAAQRNLPVLVLTARDGWPDKVASFKAGADDFLTKPFKVEELVLRLRALVRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G L + T E G + LT E++++ L LRK + + + +Y+ Sbjct: 121 GHAASAITCGSLIFDAQLGTFEQDGLPLKLTALEWRVLSCLILRKEVVVDRRELIERVYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 G E + I+V I +LR+K+ G +IETV GRGY+L+ Sbjct: 181 GDAEVDSNSIEVIIARLRRKI-----GAGHIETVRGRGYMLK 217 >gi|90022993|ref|YP_528820.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952593|gb|ABD82608.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 225 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 133/219 (60%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED++A+ +E KS+ F + + GE+G+ L Y++D I+D+GL + G Sbjct: 1 MKLLVIEDEQAIRQQLEDFFKSQKFVIESAEDGEEGLYLGSEYDYDLAIVDIGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR + P+ IL+ +DKV GL++GADDY+ KPF+ EEL AR A++RRS Sbjct: 61 EVVKTLRARGRNFPILILTARGHWQDKVDGLEAGADDYLVKPFHTEELRARANALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +V G +++N K+V + G + LT EY +E L+L ++K + HLY Sbjct: 121 GKAAPEMVFGPININTANKSVSLNGAAVELTSFEYNTLEYLALNAGKPISKTVLTEHLYH 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + +I+VFI +LRKKL + G I+TV G GY Sbjct: 181 QDFERDSNVIEVFIGRLRKKL-DPDGDLKPIKTVRGLGY 218 >gi|148556346|ref|YP_001263928.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501536|gb|ABQ69790.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 220 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 133/225 (59%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L + L+ + V + GEDG L +DAIILDLGL ++ G Sbjct: 1 MRVLIVEDEPNLGRQLRATLEGAGYAVDLATDGEDGHFLGSTESYDAIILDLGLPEVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R TPV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRREGKDTPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S ++ GD+ ++ + V + G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELIAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL G++ I T+ G GY L + A Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GQDVITTIRGLGYSLDDPA 220 >gi|260583532|ref|ZP_05851280.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC 700633] gi|260158158|gb|EEW93226.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC 700633] Length = 231 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 139/227 (61%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K LA +EL L+ E + + G G++ ++D I+LDL L ++ G E Sbjct: 6 RILIIEDEKNLARFVELELQHEGYETKICFDGRSGLQAATDEDWDVILLDLMLPELNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V+R LR K TP+ I++ S+ D+V GL GADDY+ KPF EE++ARIRA+ RR Sbjct: 66 VVRRLRQVK-KTPIIIMTARDSVMDRVTGLDQGADDYVVKPFEIEEILARIRALFRRLSI 124 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +R Q+++ DL + + +TV G I LT +EY+++ +L N L++E+ L Sbjct: 125 EEEARVQKQTILEYRDLVIEKENRTVRRNGELIDLTKREYELLLMLMENINVVLSREVLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ + E E +IDV+I LR K+ + G ++YI+TV G GYV+R Sbjct: 185 NQVWGYKMEVETNVIDVYIRYLRNKI-DIPGRESYIQTVRGTGYVMR 230 >gi|115359931|ref|YP_777069.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285219|gb|ABI90735.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 223 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 139/225 (61%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR K TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQK-QTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +A+ L+ DL ++L + V +RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNARDLLQVADLEIDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ NA K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223 >gi|117922456|ref|YP_871648.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117614788|gb|ABK50242.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 227 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 138/228 (60%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL +++ L ++++ V GE+G+ Y +DA I+D+GL + G Sbjct: 1 MRLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLFQAIEYNYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R +R + + P+ IL+ S +DKV GL +GADDY++KPF+ EELVAR++A++RRS Sbjct: 61 SLIRRVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + V + L+G EY++ E+ L + +K H+YD Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + +I+VFI +L KKL + N IET+ G+GY LR + DE Sbjct: 181 QDFDLDSNVIEVFIRRLCKKL-DPDNQYNLIETLRGQGYRLRVISPDE 227 >gi|170697061|ref|ZP_02888157.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170138235|gb|EDT06467.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 223 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 139/225 (61%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR K TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQK-QTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +A+ ++ DL V+L + V +RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNARDILQVADLEVDLIKRRVRRADNRIDLTAQEFSLLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ NA K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223 >gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 223 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 136/224 (60%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L I LK N++V GE ++ + E+D II D+ + I G+ Sbjct: 1 MKILVVEDEKDLNRVITKHLKKNNYSVDSCFDGEQALDYVLYGEYDLIITDIMMPKIDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ LRV STPV +L+ S++DK+ GL SGADDYI KPF +EL+ARIR ++RR+ Sbjct: 61 ELIKQLRVKGNSTPVIMLTAKDSLDDKILGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I D+ +++ K V I LTGKEY+++E L K +++E LNH++D Sbjct: 121 GFATNIIQVDDVVLDISKKQVTRSSESIVLTGKEYEVLEYLFKNKTGIISREQILNHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E IIDV + +RKKL + K I T G GY ++E+ Sbjct: 181 YDYEGVSNIIDVIVKNIRKKL-DVGSKKPIIHTKRGLGYFVKED 223 >gi|329849819|ref|ZP_08264665.1| feuP protein [Asticcacaulis biprosthecum C19] gi|328841730|gb|EGF91300.1| feuP protein [Asticcacaulis biprosthecum C19] Length = 226 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L+ ++ L + V GE+ L +D IILDLGL I G Sbjct: 1 MRILLAEDDPDLSRQLKASLSDAGYVVDHAPDGEEAHFLGDTEPYDCIILDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R TPV IL+ + DKV G +GADDY++KPF+ EEL+AR+RA+VRR+ Sbjct: 61 SVLERWRREGKMTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ L+V G L ++ A V G + LT EY+++ L + +N +++ + HLYD Sbjct: 121 GHAQPLLVCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQNRVISRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+VF+ +LRKK+ N + IETV G GY L+ Sbjct: 181 QDFDRDSNTIEVFMGRLRKKIGN-----DRIETVRGLGYRLK 217 >gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 227 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 131/219 (59%), Gaps = 6/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L S+ L+ EN+ V G +G + E+D I+LD+ L + G+ Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ LR K S PV +L+ +++D+V+GL GADDY++KPF+ EEL+ARIRA++RR+ Sbjct: 72 EFLQKLRPTKTS-PVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q ++ DLS++ A+ V +G + +T +EY +IE L+L + +++ HL+D Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D ++DV + LRKKL+ I T G GY Sbjct: 191 EDDSTLSNLLDVHVSNLRKKLA-----PELITTRRGHGY 224 >gi|172062381|ref|YP_001810032.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994898|gb|ACB65816.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 223 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 138/225 (61%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR K TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQK-QTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +A+ + DL V+L + V +RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNARDFLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ NA K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223 >gi|294139946|ref|YP_003555924.1| DNA-binding response regulator [Shewanella violacea DSS12] gi|293326415|dbj|BAJ01146.1| DNA-binding response regulator [Shewanella violacea DSS12] Length = 237 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 133/223 (59%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L +++ L NF + V GEDG+ + +DA I+D+GL + G Sbjct: 1 MRILLVEDDLELQKNLKQHLLDANFTLDVASDGEDGLFQGCEHNYDAGIIDVGLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ LR ++ P+ IL+ S +DKV GL +GADDY++KPF+ +EL+AR+ A++RRS Sbjct: 61 ELITRLREQEVDFPILILTARDSWQDKVAGLDAGADDYLTKPFHPQELIARLNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L+ G S+N V+ GH + L+ EY++ E L +K + + H+YD Sbjct: 121 GKASPLVHNGPFSINTSTLEVKKSGHLMSLSSSEYKLFEFFMLHLGEVKSKTVLIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKL--SNAAGGKNYIETVWGRGYVL 221 + + +I+VFI +LRKKL N G IET+ G+GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQLG---LIETLRGQGYRL 220 >gi|269102403|ref|ZP_06155100.1| putative transcriptional regulatory protein PhoP [Photobacterium damselae subsp. damselae CIP 102761] gi|268162301|gb|EEZ40797.1| putative transcriptional regulatory protein PhoP [Photobacterium damselae subsp. damselae CIP 102761] Length = 224 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 133/226 (58%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H ++ L V D E+G+ + Y D I+DLGL D G Sbjct: 1 MRILIVEDDPILSHHLKSQLSELGNQVQCADTAEEGLFFAQNYPNDIAIVDLGLPDRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R + P+ IL+ S+ +DKV GL++GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 SLIKDMRSKDLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEELVARLSALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GD+ V+L AK V + + LT EY ++E L ++K+ L+ LY+ Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVFINEEVLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E + I+V I +LRKK + G +N I T+ G+GY+ A+ Sbjct: 181 DQ-EGDPNTIEVMISRLRKKFTK-TGQENPISTIRGQGYIFELQAQ 224 >gi|307293225|ref|ZP_07573071.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306881291|gb|EFN12507.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 221 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 132/226 (58%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L + L+ + V + D GEDG L +DA++LDLGL I G Sbjct: 1 MRLLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDGHFLGATENYDAVVLDLGLPTIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + GD+ ++ + V ++G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL G + I T+ G GY L E + Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GADVITTIRGLGYSLDEPGR 221 >gi|326387920|ref|ZP_08209526.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207966|gb|EGD58777.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 225 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 135/226 (59%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V ++ GEDG + E+DA++LDLGL +I G Sbjct: 1 MRILIVEDEPTLGRQLKSTLEQNGYAVDLSTDGEDGHFMGSTEEYDAVVLDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RRS Sbjct: 61 TVLGMWRKEGRRFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G++ + ++ GD+ ++ + V + G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNSSAELIAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL G + I T+ G GY L + A+ Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GPDVITTIRGLGYSLNDPAQ 221 >gi|294012297|ref|YP_003545757.1| OmpR-family two-component system response regulator PhoP [Sphingobium japonicum UT26S] gi|292675627|dbj|BAI97145.1| OmpR-family two-component system response regulator PhoP [Sphingobium japonicum UT26S] Length = 221 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 132/226 (58%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L + L+ + V + D GEDG L +DA++LDLGL I G Sbjct: 1 MRLLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDGHFLGATESYDAVVLDLGLPTIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + GD+ ++ + V ++G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL G + I T+ G GY L E + Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GADVITTIRGLGYSLDEPGR 221 >gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325] gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325] Length = 221 Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 135/222 (60%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ L I LK N++V G++ ++ + E+D II D+ + ++ G+ Sbjct: 1 MRILVVEDERDLNRIITKHLKKNNYSVDSCFDGQEALDFISYSEYDLIITDIMMPNVNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E + LR K +TPV +L+ ++EDK+ GL SGADDYI KPF +EL+ARIR ++RR+ Sbjct: 61 EFIEKLRNNKNNTPVILLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I D+ +++ K V I LTGKEY+++E L K + L+++ LNH++D Sbjct: 121 GLATNIIQIEDVVLDISKKQVTKSKELIDLTGKEYEVLEYLMKNKGSILSRDQILNHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I+DV I +RKKLSN I T G GY ++ Sbjct: 181 YNYEGASNIVDVIIKNIRKKLSNGEDS-TIIYTKRGLGYFVK 221 >gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] Length = 219 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 94/221 (42%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ L +EL L EN+NV G+DG++ + +D IILDL L I G E Sbjct: 3 QILIVEDEQNLVRFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + STP+ I++ S DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 63 ICRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ-- 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +I ++++ +A V V G I LT EY ++ LL+ KN + +E LNH++ Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL K IETV G GYV+R Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDK-MIETVRGVGYVIR 219 >gi|288818807|ref|YP_003433155.1| two component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|288788207|dbj|BAI69954.1| two component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|308752393|gb|ADO45876.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 218 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 136/219 (62%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD +LA +++ +L+ E ++V + G G EL EFD I+LDL L + G Sbjct: 1 MRLLLIEDDASLAKALKEVLEKEGYHVSLALDGRRGYELALCEEFDLIVLDLLLPSMGGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL++LR + + TPV L+ +S + KV GADDY++KPF+ EEL+AR+RAI+RRS Sbjct: 61 EVLKSLRESGVKTPVLTLTVVSDLFKKVDLFALGADDYLTKPFHLEELLARVRAIIRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ G++ + ++ K V V G + LT EY ++E L L + +++E + Sbjct: 121 GSTSDIMELGEVRIEMNKKRVLVNGQEVPLTATEYTVLEYLCLNRGRYVSREEIIERCLS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R EPE ++VFI ++RKKL G K++I++ G GY Sbjct: 181 YRYEPESNTVEVFISRIRKKL----GIKDFIKSSRGFGY 215 >gi|116695189|ref|YP_840765.1| response regulator [Ralstonia eutropha H16] gi|113529688|emb|CAJ96035.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 224 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 131/232 (56%), Gaps = 11/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRILL+ED+ ALA + L Y D+ DG++ C E +DA+ILDLGL + Sbjct: 1 MRILLVEDEAALAAQVRASLAEAG---YAVDVAADGLDACHLGEQEPYDAVILDLGLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VLR R A++ PV IL+ S +KV G+ +GADDY++KPF EEL+ARIRA++R Sbjct: 58 DGLSVLRRWRAAQVGVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELLARIRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G + G + +N A V V G + LT E+++++ L ++K H Sbjct: 118 RAHGMPAPELQCGPVRMNPRAGKVTVDGTPVALTSHEFRVLDYLMHHPGAIVSKTALTEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +Y + + I+VF+ +LR+KL G + IETV G+GY +R + + Sbjct: 178 IYAQDFDRDSNTIEVFVGRLRRKL-----GVDVIETVRGQGYRMRPPSPPQP 224 >gi|127513623|ref|YP_001094820.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126638918|gb|ABO24561.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 226 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 134/222 (60%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL ++ L N+ + + GE+G+ + Y +DA I+D+GL + G Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR I P+ IL+ + +DKV GL +GADDY++KPF+ EELVAR++A++RR+ Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I G S+N + ++ + L+G EY++ E L +K + + H+YD Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+VFI +LRKKL + G IET+ G+GY L+ Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPNGQYGLIETLRGQGYRLK 221 >gi|83945597|ref|ZP_00957943.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii HTCC2633] gi|83850963|gb|EAP88822.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 133/230 (57%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++EDD L + +L + V GEDG+ L + +DAI+LDLGL + G Sbjct: 1 MRALIVEDDPDLRRQLSDVLTHSGYAVDTAADGEDGLFLGETEPYDAIVLDLGLPKLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A +S PV IL+ +KV G +GADDY++KPF+ EEL+AR+RA+ RR+ Sbjct: 61 TVLERWRDAGMSAPVLILTARDRWSEKVAGFDAGADDYLTKPFHPEELLARLRALTRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S ++ GDLS++ V + I LT E++M+ L ++ +++ + H+YD Sbjct: 121 GHSSSTLMCGDLSLDTRGSRVFLGDQLIKLTSHEFRMLSYLMHHRDRVISRTELVEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + I+VF+ +LRKK+ G N IETV G GY L + + E+ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GSNRIETVRGLGYRLVDPGETESS 225 >gi|91199976|emb|CAJ73018.1| strongly similar to two component response regulator of OmpR/PhoB family [Candidatus Kuenenia stuttgartiensis] Length = 223 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 133/223 (59%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+K LA+ ++ L+ +F V + GE+G+ + + +D ++LD+ L + GF Sbjct: 1 MRILVIEDEKKLANYLKKGLEEHHFAVDTCNDGEEGLFMINSHAYDLVVLDIMLPLMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R + + P +L+ +IEDKVRGL GADDY+ KPF+ EL ARIRA++RR + Sbjct: 61 EILRTARKSGLRMPFLLLTAKDAIEDKVRGLDLGADDYLVKPFSFIELTARIRALIRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H Q+ + DLS++L + G I LT KE+ ++E N LT+ H++D Sbjct: 121 VHYQTKLTVADLSLDLATHRLYRNGETIDLTNKEFALLEFFLRNLNIVLTRTQITEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DVF+ +LR K+ K I T+ G GY+++E Sbjct: 181 YNFDSFTNVVDVFVNRLRNKIDKNRETK-LIHTIKGVGYIMKE 222 >gi|331005798|ref|ZP_08329157.1| Two-component system regulatory protein [gamma proteobacterium IMCC1989] gi|330420435|gb|EGG94742.1| Two-component system regulatory protein [gamma proteobacterium IMCC1989] Length = 251 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 137/234 (58%), Gaps = 1/234 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+K L +++ L +++V + G +G+ L + +D I+D+GL ++ G Sbjct: 1 MRLLLAEDEKILRENLQQFLTRNSYSVDSAEEGREGLFLGSEHPYDIAIIDIGLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ LR K PV IL+ S +DKV GL++GADDY++KPF+ EEL+AR+ A+ RRS+ Sbjct: 61 ELIKQLRQHKKDFPVLILTARDSWQDKVIGLEAGADDYLAKPFHNEELLARLNALTRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A I G++ +N K V + I LT EY +E L+L K ++K HLYD Sbjct: 121 GLASPEIHIGEILINTAKKLVSINNQDITLTQYEYNTLEYLALNKARVISKTELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 + + +I+V I +LRKKL K + T G+GY L EN + T E E Sbjct: 181 QDFDLDSNVIEVLIGRLRKKLDPNNIHKPIV-THRGQGYRLTENTAENTTEKTE 233 >gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 228 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 136/224 (60%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K LA +I+ L+ E F V + G +G++L Y +D IILD+ L + G Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+ R LR K P+ +L+ + S+E++V GL GADDY+ KPF+ ELVAR+RA++RR+ Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + Q + GDL +NL + V +G ++L+ KE+ ++EL ++E L+ L+ Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + EP I+DV++ LRKKL G IETV GY L++ Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLK-PFGYDEKIETVHNIGYRLKK 223 >gi|119493491|ref|ZP_01624158.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119452674|gb|EAW33854.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 224 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 128/224 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A ++ L+++N+ + V GE G E + +E+D I+LD+ L + G Sbjct: 1 MRILLVEDDQRIAKALSRSLQTQNYVIDVALEGEAGWEFVQSFEYDLIVLDVMLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R A + PV +L+ S +DKV GL +GADDY+ KPF+ EL ARIRA++RR Sbjct: 61 NLCQRIRQAGYTMPVLMLTAKDSSQDKVIGLDAGADDYVVKPFDLPELAARIRALLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ LS+N + V H +HLT KEY ++EL ++ L HL+ Sbjct: 121 SILPPILAWEKLSLNPNTCEVTYNQHPLHLTPKEYGLLELFLHNPQRVFSRSNILEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + + V I +R+KL + IETV+G GY L+ + Sbjct: 181 FEDPPSEEAVKVHIKDIRRKLKTVGAPPDLIETVYGMGYRLKRS 224 >gi|52425301|ref|YP_088438.1| OmpR protein [Mannheimia succiniciproducens MBEL55E] gi|52307353|gb|AAU37853.1| OmpR protein [Mannheimia succiniciproducens MBEL55E] Length = 226 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 134/225 (59%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + + I++ L F+V + TD G+ G++ K +DA++LDL L + G Sbjct: 6 MRILLIEDDALIGNGIKVGLTKSGFSVDWFTD-GKTGLQAIKSAPYDAVVLDLTLPGMDG 64 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++L+ R KI TPV IL+ ++ D+V GLQ GADDY+ KPF E++AR++A++RR Sbjct: 65 MDILQQWRNEKIDTPVLILTARDTLNDRVTGLQRGADDYLCKPFALAEVIARLQALIRRR 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A ++ + + +++ V +QG I LT +EY ++EL + K L++ LY Sbjct: 125 YGQANPIVEHSLVKFDPNSRKVSLQGKDIPLTTREYNLLELFMMNKERVLSRSFIEEKLY 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + DE ++V I LR+KL GK +I TV G GY L +N Sbjct: 185 NWDDEVSSNALEVHIHNLRQKL-----GKQFIRTVHGVGYALGKN 224 >gi|109899149|ref|YP_662404.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109701430|gb|ABG41350.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 226 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 134/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L ++ +L++ ++V + D G + L + +D I+D+GL + GF Sbjct: 1 MRILIVEDDSRLLTQLDTLLQTHGYSVDLADDGAKALFLLSEHPYDLAIIDIGLPVMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ R +S P+ IL+ ++KV GL +GADDY++KPF EEL+AR++A++RRS Sbjct: 61 EVIQKARKNNVSCPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A I G +S+N ++ V V G I LT EY++ E L L ++K H+YD Sbjct: 121 GQANPTIELGPISLNTLSEQVSVSGTDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +I+VF+ +LRKKL + G N IET+ GRGY Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPQGSINPIETMRGRGY 218 >gi|85373556|ref|YP_457618.1| two-component response regulator [Erythrobacter litoralis HTCC2594] gi|84786639|gb|ABC62821.1| two-component response regulator [Erythrobacter litoralis HTCC2594] Length = 225 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 132/225 (58%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V ++ GEDG L ++DA+ILDLGL +I G Sbjct: 1 MRILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHFLGSTEDYDAVILDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLGMWRKEGRDFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S + GD+ ++ + V ++G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNTSSELTAGDVRLDTRSGRVSLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL G I T+ G GY L + A Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GAEVITTIRGLGYSLDDPA 220 >gi|146294933|ref|YP_001185357.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|145566623|gb|ABP77558.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 231 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 141/232 (60%), Gaps = 5/232 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L +++ L ++++ V GE+G+ +DA I+D+GL + G Sbjct: 1 MRLLLVEDDIELQTNLKQHLLDAHYSIDVASDGEEGLFQALECNYDAAIIDVGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R++R + P+ IL+ S +DKV GL +GADDY++KPF+ +ELVAR++A++RRS Sbjct: 61 SLIRSVRQKERDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L+ G S+N + + I+L+G EY++ E L L + +K + H+YD Sbjct: 121 GKASPLVYNGPFSLNTSSLEIRKGDELINLSGSEYKLFEFLMLHQGEVKSKTVLTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR----ENAKDE 228 + + +I+VFI +LRKKL + N IET+ G+GY L+ E++ DE Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNQYNLIETLRGQGYRLKILAPESSADE 231 >gi|332185405|ref|ZP_08387153.1| response regulator [Sphingomonas sp. S17] gi|332014383|gb|EGI56440.1| response regulator [Sphingomonas sp. S17] Length = 226 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 131/221 (59%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L ++ L+ + + + GE+G L +DAI+LDLGL +I G Sbjct: 1 MRVLIVEDEPNLGQQLKATLEGAGYAIDLATDGEEGHFLGSTESYDAIVLDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R +TPV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRKEGKTTPVLVLTARDSWSDKVAGLDAGADDYVAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + GD+ ++ + V G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELTAGDVRLDTRSGKVTRAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ ++RKKL G++ I T+ G GY L Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GQDVITTIRGLGYSL 216 >gi|114776380|ref|ZP_01451425.1| DNA-binding response regulator [Mariprofundus ferrooxydans PV-1] gi|114553210|gb|EAU55608.1| DNA-binding response regulator [Mariprofundus ferrooxydans PV-1] Length = 230 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 135/230 (58%), Gaps = 10/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L H + L + F V G DG + + D IILDLGL D+PG Sbjct: 1 MRLLLIEDDPELCHELASKLAQQGFAVDSAQTGVDGAYMGESEPHDIIILDLGLPDVPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L R I+TPV IL+ + +KV G ++GADDY++KPF+ EEL+ R++A++RR+ Sbjct: 61 DILAQWRRKNIATPVLILTARGAWHEKVEGFRAGADDYLTKPFHFEELLVRLQALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTV---EVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A + IV G+L ++ ++++ + Q I LTG E++++ + L + + Sbjct: 121 GVAGANIVIGNLQLDEESQSAIWDDAQAGLRHIELTGIEFRLLRYMMLHPKRVFSATHLV 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 H+YD DE E +I+V++ +LRKKL+ K I T G+GY L +A Sbjct: 181 EHVYDFNDEKESNVIEVYVSRLRKKLA-----KEVICTRRGQGYYLDPDA 225 >gi|295700312|ref|YP_003608205.1| transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439525|gb|ADG18694.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 225 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 134/228 (58%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LAH + ML+ E F + G++ L + +D I+LDL L + G Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDEADRLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR +TPV IL+ SI++KV L +GADDY+ KPF EL+ARI+ +RR Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S +V GDLS ++D + ++G +++T +E ++E L LR T+TK ++ ++ Sbjct: 121 PSKASEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DEP ++++I +LRKKL G I T+ G GY+LR+ D+ Sbjct: 181 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKREDDQ 225 >gi|254304225|ref|ZP_04971583.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324417|gb|EDK89667.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 224 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 137/224 (61%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L + I LK NF+V GE+ +E + ++D IILD+ + + G+ Sbjct: 1 MKILVVEDEKDLNNIITKHLKKNNFSVDSVFDGEEALEYLNYGDYDVIILDVMMPKMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K T V +L+ I++K++GL GADDY+ KPF+ EL+ARIRA+VRR Sbjct: 61 EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL V++ K+V G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNISNELQIDDLIVDISKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DIGDSKPIIHTKRGLGYVLKED 223 >gi|288960015|ref|YP_003450355.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288912323|dbj|BAI73811.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 219 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 130/219 (59%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED LA + L E + V GE+G L + +DA+ILDLGL I G Sbjct: 1 MRVLVVEDTPELARQLTQRLAREGYAVDGAADGEEGRFLGETEPYDAVILDLGLPKIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A IS PV IL+ + +KV+G+ +GADDY++KPF+ EEL+AR+RA++RR++ Sbjct: 61 TVLRGWRRAGISVPVLILTARGAWTEKVQGIDAGADDYLAKPFSMEELLARVRALIRRAK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + I G + ++ V V G I LT EY+++ L RK +++ H+Y Sbjct: 121 GHASAEITCGGVVLDTRTGRVTVDGEPIELTAFEYRVLSYLMHRKGQVVSRTELTEHVYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LR+KL G + I+TV G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRRKL-----GVDVIKTVRGLGY 214 >gi|107027098|ref|YP_624609.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691509|ref|YP_837042.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896472|gb|ABF79636.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116649509|gb|ABK10149.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 223 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 137/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V VT+ G+DG+ L +FD I+LD+ L + GF Sbjct: 1 MRILIVEDEPKMASYLRKGLTEASYTVDVTENGQDGLFLALHEDFDLIVLDVMLPALDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR K TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQK-QTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ DL ++L + V RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ NA K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223 >gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 240 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA+++ L+ E + + GE+G+ + +D IILDL L + G Sbjct: 15 MRILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAETVVYDLIILDLMLPRLDGM 74 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR +I TPV +L+ ++ DKVRGL +GADDY++KPF EL+AR+RA++RR Sbjct: 75 EVIRRLRNERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRRES 134 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +++ GDL ++ ++ V I+LT KEY ++E L N LT+ H++D Sbjct: 135 DNKSTVLQVGDLVMDTVSRQVRRGDREINLTNKEYALLEYLMRNPNRVLTRTQIAEHVWD 194 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 I+DV+I LR+K+ + K + T+ G GY LRE K Sbjct: 195 YDFSGMSNIVDVYIRYLRRKIDDNFEPK-LLYTIRGSGYCLREPGK 239 >gi|87200082|ref|YP_497339.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135763|gb|ABD26505.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 225 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 134/226 (59%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V ++ GEDG L E+DA+ILDLGL +I G Sbjct: 1 MRILIVEDEPTLGKQLKNTLEQNGYAVDLSVDGEDGHFLGSTEEYDAVILDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G++ S + GD+ ++ + V + G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNSSSELTAGDVRLDTRSGRVTLNGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL G + I T+ G GY L + A+ Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GPDVITTIRGLGYSLDDPAE 221 >gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 225 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 131/223 (58%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L+ + L+ + V + GEDG L +DA++LDLGL ++ G Sbjct: 1 MRVLIVEDEPTLSRQLRTTLEGAGYAVDLATDGEDGHFLGSSENYDAVVLDLGLPEVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRKEGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + GD+ ++ + V + G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLMHHKGKVVSRTEMIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ ++RKKL G++ I T+ G GY L + Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GQDVITTIRGLGYALND 218 >gi|332307268|ref|YP_004435119.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174597|gb|AEE23851.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 226 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 134/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L ++ +L++ ++V + D G + L + +D I+D+GL + GF Sbjct: 1 MRILIVEDDSRLLTQLDTLLQTNGYSVDLADDGAKALFLLSEHPYDLAIIDIGLPVMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ R ++ P+ IL+ ++KV GL +GADDY++KPF EEL+AR++A++RRS Sbjct: 61 EVIQKARKNSVTCPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A I G +S+N ++ V V G I LT EY++ E L L ++K H+YD Sbjct: 121 GQANPTIELGPISLNTLSEQVSVSGQDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +I+VF+ +LRKKL + G N IET+ GRGY Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPEGKINPIETMRGRGY 218 >gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 224 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 136/224 (60%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L + I LK NF+V GE+ +E + ++D IILD+ + + G+ Sbjct: 1 MKILVVEDEKDLNNIISKHLKKNNFSVDSVFDGEEALEYLSYGDYDVIILDVMMPKMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K T V +L+ I++K++GL GADDY+ KPF+ EL+ARIRA+VRR Sbjct: 61 EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL V+ K+V G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNISNELQIDDLIVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGDSKPLIHTKRGLGYVLKED 223 >gi|194291903|ref|YP_002007810.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424] gi|193225807|emb|CAQ71753.1| putative response regulator, OmpR family [Cupriavidus taiwanensis LMG 19424] Length = 224 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ LA + L + V G D L +DA+ILDLGL + G Sbjct: 1 MRILLVEDEATLAAQVRASLADAGYAVDTAADGLDAWHLGAEEPYDAVILDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A+++ PV IL+ S +KV G+ +GADDY+SKPF EEL+ARIRA++RR+ Sbjct: 61 SVLRRWRAAQVNAPVLILTARDSWTEKVEGIDAGADDYLSKPFRMEELLARIRALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G + +N A TV V G + LT E+++++ L ++K H+Y Sbjct: 121 GMPAPELQCGPVRMNPRAGTVSVDGAPVVLTAHEFRVLDYLMHHPGAIVSKTALTEHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ +LR+KL G + IETV G+GY LR + Sbjct: 181 QDFDRDSNTIEVFVGRLRRKL-----GVDIIETVRGQGYRLRPPPE 221 >gi|110633248|ref|YP_673456.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284232|gb|ABG62291.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 222 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L I + L+ + V GE+G L +DAI+LD+GL + G Sbjct: 1 MRILVVEDDKDLNRQISVALEDAGYVVDRAFDGEEGHFLGDTEPYDAIVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVLERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVTKPFHMEEVLARVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G L ++ A ++ G + LT EY+M+ L K + +++ + HLYD Sbjct: 121 GHASSELYCGPLRLDTKASKADMDGVPLKLTSHEYRMLAYLMHHKGSVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ +LRKKL G + IETV G GY +RE Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL-----GVDLIETVRGMGYRMRE 218 >gi|330445663|ref|ZP_08309315.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489854|dbj|GAA03812.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 224 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H ++ L V + E+G+ + Y D I+D+GL D G Sbjct: 1 MRILIVEDDAILSHHLKSQLSELGNQVQCANTAEEGLFFAENYPNDIAIVDIGLPDRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R + P+ IL+ S+ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS Sbjct: 61 SLIKDMRKKGLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GD+ V+L AK V VQ + LT EY ++E L ++K+ L+ LY+ Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVYVQESLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E + I+V I +LRKK + G N I T+ G+GY+ +A+ Sbjct: 181 DQ-EGDPNTIEVMISRLRKKFTK-TGQDNPISTIRGQGYIFELSAQ 224 >gi|127513276|ref|YP_001094473.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126638571|gb|ABO24214.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 224 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 131/219 (59%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 1 MRILVVEDDPLLSHHLKVQLSELGNQVQVAQTAKEGFYQATNYPIDIAIIDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++LR A++ P+ IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 SLIQSLRKAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I +G L ++L AK V + + +T EYQ++E L + + K+ L+ +Y Sbjct: 121 GFVKPQITSGPLELDLAAKQVTLDQSPMEVTAFEYQILEYLMRHCHEVVAKQRLLDVIY- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G +N I T+ G+GY Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-GGLENPIATIRGQGY 217 >gi|34762634|ref|ZP_00143627.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741605|ref|ZP_04572086.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13] gi|256844930|ref|ZP_05550388.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_36A2] gi|294785787|ref|ZP_06751075.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27] gi|27887714|gb|EAA24790.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429253|gb|EEO39465.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13] gi|256718489|gb|EEU32044.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_36A2] gi|294487501|gb|EFG34863.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27] Length = 224 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 136/224 (60%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L + I LK NF+V GE+ ++ + +D I+LD+ L + G+ Sbjct: 1 MKILVVEDEKDLNNIITKNLKKNNFSVDSVYDGEEALKYSDYGNYDLILLDVMLPKMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR K T V +L+ +IEDK++GL GADDY+ KPF+ EL+ARIRAI+RR Sbjct: 61 EVVKHLRANKNETAVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIIRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + + DL V+ K+V G I LTGKEY+++E L K L+++ + ++D Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E IIDV I +RKK+ + K I T G GYVL+E+ Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGDSKPLIHTKRGLGYVLKED 223 >gi|91779593|ref|YP_554801.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91692253|gb|ABE35451.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 225 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 134/228 (58%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LAH + ML+ E F + G+ +L + +D I+LDL L + G Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR +TPV IL+ SI++KV L +GADDY+ KPF EL+ARI+ +RR Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S +V GDL+ ++D + ++G +++T +E ++E L LR T+TK ++ ++ Sbjct: 121 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DEP ++++I +LRKKL G I T+ G GY+LR+ D+ Sbjct: 181 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKKEDDQ 225 >gi|296162732|ref|ZP_06845517.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295887048|gb|EFG66881.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 296 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 134/228 (58%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LAH + ML+ E F + G+ +L + +D I+LDL L + G Sbjct: 72 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 131 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR +TPV IL+ SI++KV L +GADDY+ KPF EL+ARI+ +RR Sbjct: 132 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 191 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S +V GDL+ ++D + ++G +++T +E ++E L LR T+TK ++ ++ Sbjct: 192 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 251 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DEP ++++I +LRKKL G I T+ G GY+LR+ D+ Sbjct: 252 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKKEDDQ 296 >gi|315499028|ref|YP_004087832.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315417040|gb|ADU13681.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 226 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L+ ++ L+ + V GE+ L +D +ILDLGL I G Sbjct: 1 MRILLAEDDPDLSRQLKASLQDAGYVVDHAPDGEEAHFLGDTEPYDCVILDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R +TPV IL+ + DKV G +GADDY++KPF+ EEL+AR+RA+VRR+ Sbjct: 61 SVLERWRRDGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ L+V G + ++ A V G + LT EY+++ + L ++ +++ + HLYD Sbjct: 121 GHAQPLLVCGGVRLDPRAARASVNGEPLRLTSLEYRLLHYMMLHQSRVISRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+VF+ +LRKK+ G IETV G GY L+ Sbjct: 181 QDFDRDSNTIEVFMGRLRKKI-----GTERIETVRGLGYRLK 217 >gi|187918761|ref|YP_001887792.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717199|gb|ACD18422.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 225 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 134/228 (58%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LAH + ML+ E F + G+ +L + +D I+LDL L + G Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDTVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR +TPV IL+ SI++KV L +GADDY+ KPF EL+ARI+ +RR Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S +V GDL+ ++D + ++G +++T +E ++E L LR T+TK ++ ++ Sbjct: 121 PSKASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DEP ++++I +LRKKL G I T+ G GY+LR+ D+ Sbjct: 181 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKKEDDQ 225 >gi|226939262|ref|YP_002794333.1| OmpR [Laribacter hongkongensis HLHK9] gi|226714186|gb|ACO73324.1| OmpR [Laribacter hongkongensis HLHK9] Length = 219 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L +E L+ FNV G +DA++LDLGL + G Sbjct: 1 MRVLLVEDDPLLGDGLEAGLRQSGFNVDWMKDGAAARAAMAAAPYDAVVLDLGLPKVSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R + TPV IL+ S+ED++RGL +GADDY+ KPF E+VAR+RA++RRS Sbjct: 61 DVLGEWRRQGVDTPVLILTARDSVEDRIRGLDTGADDYLVKPFALGEVVARLRALIRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + G L ++ +A+TV G + LT KE+Q++EL K+ L + + LY Sbjct: 121 GRANPVFEHGTLVLDPNARTVLQDGRAVELTAKEFQLLELFLENKSRVLPRALLEEKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ++V + LRKKL G I TV G GY L E Sbjct: 181 WAQELDSNALEVHVHHLRKKL-----GSQLIRTVRGVGYQLGE 218 >gi|222099244|ref|YP_002533812.1| Response regulator [Thermotoga neapolitana DSM 4359] gi|221571634|gb|ACM22446.1| Response regulator [Thermotoga neapolitana DSM 4359] Length = 233 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 133/223 (59%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K LA I LK E F V V GE+G+ + +FD +ILD+ L G+ Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+A+R I+TPV +L+ +S +E +V+GL GADDY+ KPF+ EL+AR++A++RR Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL ++ + V G I LT KEYQ++E L + KN +TKE HL+ Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + I LRKK+ K I TV G GYV+R+ Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGF-KKKIIHTVRGIGYVVRD 232 >gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 224 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 135/222 (60%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+ LA IEL L E + V V+ G +G+EL E+ I+LD+ L + G E Sbjct: 4 RVLIIEDEANLARFIELDLTHEGYEVRVSHDGREGLELALSEEWGLILLDVMLPSLNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K TP+ +++ S+ D+V GL +GADDYI KPF EEL+ARIRA+ RR Sbjct: 64 VCRRIRAVK-QTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHA 122 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ ++T DL+V+LDA+TV+ I LT +EY ++ N LT++ L+ ++ Sbjct: 123 PAEERLLTFKDLTVDLDARTVKKGNQFIELTKREYDLLVTFLQNTNIVLTRDTLLDKVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV++ LR KL + + YI+TV G GYV+R Sbjct: 183 FDTEVETNVVDVYVRYLRHKL-DETDKERYIQTVRGAGYVMR 223 >gi|103486293|ref|YP_615854.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976370|gb|ABF52521.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 221 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 130/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V + GEDG L +DA ILDLGL +I G Sbjct: 1 MRILIVEDEPTLGPQLKATLEGAGYAVDLATDGEDGHFLGSTETYDAAILDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R K + PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLDRWRREKRNFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + GD+ ++ + V + G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ ++RKKL G + I T+ G GY L Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GADIITTIRGLGYQL 216 >gi|196229835|ref|ZP_03128699.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196226161|gb|EDY20667.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 221 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 133/219 (60%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ + IE L ++ + + + +DAI+LDLGL D G Sbjct: 1 MRILIVEDDRKVGQFIERGLSEVAYSGTLVRTCAEARDTLADSPYDAIVLDLGLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R + + PV ILS +++DKV+GL GADDY++KPF+ EEL+ARIR+++RR Sbjct: 61 QLLRDWRSSGFNEPVLILSARDALQDKVKGLNLGADDYLAKPFSLEELIARIRSLLRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + ++L A+TVEV+G RI LT +E+ ++EL + LT+ M ++D Sbjct: 121 GKKTTVFEHRAIKLDLLARTVEVEGKRIDLTAREFSLLELFMQNQGRVLTRTMIAEKVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++DV++ +LRKKL + K Y +T+ G GY Sbjct: 181 SHSDLDTNLLDVYMRRLRKKLESTP-DKQYFKTLRGVGY 218 >gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein [Campylobacter concisus 13826] gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus 13826] Length = 219 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 132/223 (59%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L I LK ++V GE+ ++ +D I+LDL + + G Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ R AK+ TPV IL+ ++D V+GL +GADDY+ KPF+ +EL+AR+R ++RR+ Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S I G+L ++L K+VE G +I LTGKEY+++E L L K LT++ H++D Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +IDV I +RKKL I+T G GYV+++ Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEA----IQTKRGLGYVVKD 219 >gi|257459560|ref|ZP_05624669.1| transcriptional regulatory protein QseB [Campylobacter gracilis RM3268] gi|257442985|gb|EEV18119.1| transcriptional regulatory protein QseB [Campylobacter gracilis RM3268] Length = 220 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 129/221 (58%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED+K L I LK + ++V G++ +E ++DAI+LD + + GF Sbjct: 1 MKILLVEDEKDLNQIIAKCLKKDGYSVDCAFCGKEALEFLDVAKYDAIVLDAMMPVMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+A R + TPV L+ + ED + GL GADDY+ KPF+ EL+AR+RAI+RR Sbjct: 61 EFLKAARARGLGTPVLFLTARDAKEDIIAGLDLGADDYMVKPFDFRELLARLRAIIRRKN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + I+ + +NL K+V G + LTGKEY+++ELL L + L++E ++D Sbjct: 121 ATADNEIIIRQVRLNLSKKSVVCAGEVVELTGKEYRILELLMLNRGAILSREQIGESIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE +IDV I +RKKL + IET G GYV+ Sbjct: 181 FSDEASSNVIDVLIKNIRKKLGEHG---DIIETKRGLGYVV 218 >gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 136/222 (61%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ LA +EL L E F+V+V G +G+EL +D I+LD+ L + G E Sbjct: 4 RILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPWDLILLDVMLPSLNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK STP+ +++ S+ D+V GL +GADDYI KPF EEL+ARIRA+ RR Sbjct: 64 VCRRIRAAK-STPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++T DL V++ A+TV+ I LT +EY ++ N LT+++ L ++ Sbjct: 123 ESGGQVLTFKDLVVDMQARTVKKGNAFIELTKREYDLLVAFMQNINVVLTRDLLLEKVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV++ LR+KL + + YI+TV G GYV+R Sbjct: 183 FDTEVETNVVDVYVRYLRQKL-DEHNKERYIQTVRGAGYVMR 223 >gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 804 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 127/221 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD+ LA I+ LKS+++ V + G+ G+E + +E+D I+LDL L + G Sbjct: 1 MKLLLVEDDQNLAEVIKGALKSQHYLVDLATDGQTGLEFAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + R TP+ +++ KVR L +GADDY+ KPFN +EL+AR+RA++RR Sbjct: 61 QFCQQRRKQGDLTPILLVTAQDDATYKVRALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+ G L +N + V QG +HLT KEY ++EL +N ++ + HL+ Sbjct: 121 LSSTPLLQWGPLDLNPSSCQVSYQGQLLHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + P + I LR+KL A N IETV+G GY L Sbjct: 181 FDESPTENAVRTQIKSLRQKLRGAGASPNLIETVYGLGYRL 221 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 2/113 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++DD L L+ F + + + E + D +ILD+ + +I G + Sbjct: 509 KLMIVDDDPNLLEITRTYLEPWGFTLTLLQDPKQFWETLEQTNPDLLILDVEMPEISGID 568 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 + + +R PV LS +S + G Q+GADDYI KP +LV+RI Sbjct: 569 LCQVVRNDPHWHELPVLFLSAHTSAKVVREGFQAGADDYIYKPIVDSDLVSRI 621 >gi|90579472|ref|ZP_01235281.1| putative transcriptional regulatory protein PhoP [Vibrio angustum S14] gi|90439046|gb|EAS64228.1| putative transcriptional regulatory protein PhoP [Vibrio angustum S14] Length = 224 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 133/226 (58%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H ++ L V + E+G+ + Y D I+D+GL D G Sbjct: 1 MRILIVEDDAILSHHLKSQLSELGNQVQCANTAEEGLFFAENYPNDIAIVDIGLPDRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R + P+ IL+ S+ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS Sbjct: 61 SLIKDMRKKGLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GD+ V+L AK V V + LT EY ++E L ++K+ L+ LY+ Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVYVHETLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E + I+V I +LRKK + G N I T+ G+GY+ NA+ Sbjct: 181 DQ-EGDPNTIEVMISRLRKKFTK-TGQDNPISTIRGQGYIFELNAQ 224 >gi|77360226|ref|YP_339801.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas haloplanktis TAC125] gi|76875137|emb|CAI86358.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas haloplanktis TAC125] Length = 224 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD LA ++ L+ E ++V + GE G+ Y D ++DLGL I G Sbjct: 1 MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ R I+ P+ IL+ +DKV GL +GADDY++KPF+ EEL+AR A++RRS Sbjct: 61 ELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + G + ++ ++ V V + LT EY+++E L + ++K H+YD Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+VF+ +LRKKL + G N +ET+ GRGY L+ Sbjct: 181 QDFDLDSNVIEVFVLRLRKKL-DPEGVLNPVETLRGRGYRLK 221 >gi|89076752|ref|ZP_01163030.1| putative transcriptional regulatory protein PhoP [Photobacterium sp. SKA34] gi|89047591|gb|EAR53203.1| putative transcriptional regulatory protein PhoP [Photobacterium sp. SKA34] Length = 224 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H ++ L V + E+G+ + Y D I+D+GL D G Sbjct: 1 MRILIVEDDAILSHHLKSQLSELGNQVQCANTAEEGLFFAENYPNDIAIVDIGLPDRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R + P+ IL+ S+ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS Sbjct: 61 SLIKDMRKKGLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GD+ V+L AK V V + LT EY ++E L ++K+ L+ LY+ Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVYVHEILLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E + I+V I +LRKK + G +N I T+ G+GY+ NA+ Sbjct: 181 DQ-EGDPNTIEVMISRLRKKFTK-TGQENPISTIRGQGYIFELNAQ 224 >gi|149187001|ref|ZP_01865309.1| two-component response regulator [Erythrobacter sp. SD-21] gi|148829390|gb|EDL47833.1| two-component response regulator [Erythrobacter sp. SD-21] Length = 226 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 133/226 (58%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V ++ GEDG L ++DA+ILDLGL +I G Sbjct: 1 MRILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHFLGSTEDYDAVILDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S + G++ ++ + V ++G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNTSSELTAGEVRLDTRSGRVTLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL G I T+ G GY L + A+ Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GAEVITTIRGLGYSLDDPAE 221 >gi|91787833|ref|YP_548785.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91697058|gb|ABE43887.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 223 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 135/219 (61%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL ++ L+++ + V GE+G+ L + Y D +I+DLGL + G Sbjct: 1 MRLLLIEDDAALRLTLARQLEADGYRVDQAKDGEEGLFLAREYPVDLVIVDLGLPKLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR + P+ IL+ S +DKV GL++GADDY+ KPF EL AR++A++RRS Sbjct: 61 TIVQRLRQEGRAIPILILTARGSWQDKVVGLEAGADDYLVKPFEYPELAARLKALLRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ G LS++L A+ + G + LT EY+++E L ++ +TK+ ++LY Sbjct: 121 KTASDVLTLGPLSIDLSAQAARLNGAALELTAFEYRLLEYLVRQRPGIVTKQALSDYLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +++V + +LR+KL + G IETV GRGY Sbjct: 181 HGEDRDSNVLEVLVGRLRRKL-DPDGSLGPIETVRGRGY 218 >gi|315126788|ref|YP_004068791.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas sp. SM9913] gi|315015302|gb|ADT68640.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas sp. SM9913] Length = 224 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD LA ++ L+ E ++V + GE G+ Y D ++DLGL I G Sbjct: 1 MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ R I+ P+ IL+ +DKV GL +GADDY++KPF+ EEL+AR A++RRS Sbjct: 61 ELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + G + ++ ++ V V + LT EY+++E L + ++K H+YD Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVNDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+VF+ +LRKKL + G N +ET+ GRGY L+ Sbjct: 181 QDFDLDSNVIEVFVLRLRKKL-DPDGVLNPVETLRGRGYRLK 221 >gi|149374413|ref|ZP_01892187.1| DNA-binding heavy metal response regulator, putative [Marinobacter algicola DG893] gi|149361116|gb|EDM49566.1| DNA-binding heavy metal response regulator, putative [Marinobacter algicola DG893] Length = 221 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ LA + L+ F+V T + + L + E+ AIILDLGL D G Sbjct: 1 MRLLLVEDDRLLADGLSRQLEKAGFSVDTTHTAREAMMLARQEEYRAIILDLGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR R I+ PV IL+ DKV GL++GADDY++KPF EEL+AR+ AIVRRS Sbjct: 61 DVLRKWRKDHIAFPVLILTARGDWHDKVEGLKAGADDYLAKPFQTEELIARLNAIVRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G SL+ G ++ + ++++ H LTG E++++ L R +KE + LY Sbjct: 121 GRIHSLVKAGRYELDENRQSLKSDDGTEHSLTGTEFRLLRCLMSRPGQVFSKEQLMEQLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + D P +I+ +I +LRK + N + I T G+GY+ + A Sbjct: 181 NLNDTPSENVIEAYIRRLRKLVGN-----DTISTRRGQGYLFNDIA 221 >gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] Length = 223 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 132/223 (59%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA I LK E F V V GE+G+ + FD +ILD+ L G+ Sbjct: 1 MRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+++R ++TPV +L+ +S +E +V+GL GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL ++ K G I LT KEYQ++E L + KN +TKE HL+ Sbjct: 121 ESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE ++ I LRKK+ K I TV G GYV R+ Sbjct: 181 FDDEVFSDVLRSHIKNLRKKVDKGFKRK-IIHTVRGIGYVARD 222 >gi|332533632|ref|ZP_08409492.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas haloplanktis ANT/505] gi|332036913|gb|EGI73373.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas haloplanktis ANT/505] Length = 224 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD LA ++ L+ E ++V + GE G+ Y D ++DLGL I G Sbjct: 1 MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ R I+ P+ IL+ +DKV GL +GADDY++KPF+ EEL+AR A++RRS Sbjct: 61 ELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + G + ++ ++ V V + LT EY+++E L + ++K H+YD Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+VF+ +LRKKL + G N +ET+ GRGY L+ Sbjct: 181 QDFDLDSNVIEVFVLRLRKKL-DPDGVLNPVETLRGRGYRLK 221 >gi|188996079|ref|YP_001930330.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931146|gb|ACD65776.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 224 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 91/225 (40%), Positives = 137/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDDK L+ I LK E ++V E+G+ + FD IILDL L + GF Sbjct: 1 MKVLIVEDDKNLSKLIAKRLKEEGYDVVQAYDAEEGLNYANYENFDIIILDLMLPKMSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +LR KI TP+ +LS S+EDKV+GL GADDY++KPF+ EL+ARI+A+VRRS+ Sbjct: 61 YIIESLRNKKIKTPILVLSAKDSVEDKVKGLSLGADDYLTKPFSFPELLARIQALVRRSK 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S + DL ++L K V +I LT KEY++++ L +T+ M L +++ Sbjct: 121 DIDEISKLKYHDLVMDLLKKEVYRGNKKIDLTAKEYELLKYLMENAEKIVTRNMILANVF 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + E ++DV I +LR K+ + K I TV G GYVL+ N Sbjct: 181 DIDFDIESNVVDVQIHRLRDKI-DKGFDKRLIHTVRGFGYVLKAN 224 >gi|332188679|ref|ZP_08390394.1| response regulator [Sphingomonas sp. S17] gi|332011296|gb|EGI53386.1| response regulator [Sphingomonas sp. S17] Length = 222 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD AL +I L++E+ V + D G D +DA +LDLGL D G Sbjct: 1 MRILLVEDDPALGPAIARALRAEHCAVDLFDTGVDAGHAGDTEIYDAAVLDLGLPDGDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R A + PV IL+ DKV G ++GADDY++KPF EELV R+RA+VRR+ Sbjct: 61 TLLREWREAGRALPVLILTARDGWSDKVAGFKAGADDYLTKPFRVEELVMRLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ + G LS + E+ G + LT E++++ L LRK + + L +Y+ Sbjct: 121 GHAQPRLTCGPLSFDSQTGQFELDGLPLKLTAFEWRVLSALMLRKEAVIPRLELLERVYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G + + ++V + +LRKK+ G + IETV G GY L Sbjct: 181 GDADVDSNSLEVIVGRLRKKI-----GADLIETVRGMGYRL 216 >gi|240948578|ref|ZP_04752951.1| transcriptional regulatory protein [Actinobacillus minor NM305] gi|240297086|gb|EER47657.1| transcriptional regulatory protein [Actinobacillus minor NM305] Length = 221 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 134/222 (60%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDDK + I+L L +NF V + TD G+ G + E+DA+ILDL L + G Sbjct: 1 MRILLIEDDKLIGEGIKLGLTKQNFAVDWFTD-GKLGFDALFSAEYDAVILDLSLPRMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++L+ R TPV IL+ ++++++ G +GADDY+ KPF E+V R++A++RRS Sbjct: 60 LDILKQWRKENQHTPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S IV GDL ++ ++V + G I LT KE++++EL + K+ L + + LY Sbjct: 120 HQQVSSEIVIGDLVIDSHTRSVSLDGEDIALTAKEFRLLELFAHHKDRVLPRTLIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL GK++I+TV G GY L Sbjct: 180 SWDNEVSSNALEVYIHNLRKKL-----GKSWIKTVHGIGYKL 216 >gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR Length = 214 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 130/221 (58%), Gaps = 9/221 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ LA +EL L EN+NV G+DG++ + +D IILDL L I G E Sbjct: 3 QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + STP+ I++ S DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 63 ICRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--- 118 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q I+ VN V V G I LT EY ++ LL+ KN + +E LNH++ Sbjct: 119 QPQKDII----DVNGTLLKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 174 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL K IETV G GYV+R Sbjct: 175 NSEVETNVVDVYIRYLRNKLKPYDRDK-MIETVRGVGYVIR 214 >gi|188578983|ref|YP_001915912.1| two-component system regulatory protein (response regulator) required for AvrXa21 activity R2 (raxR2) [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523435|gb|ACD61380.1| two-component system regulatory protein (response regulator) required for AvrXa21 activity R2 (raxR2) [Xanthomonas oryzae pv. oryzae PXO99A] Length = 223 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 131/215 (60%), Gaps = 1/215 (0%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 ++ED+ L ++ LK E F V GE+G+ + + FD I+DLGL + G E+++ Sbjct: 1 MVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMELIK 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 ALR PV IL+ SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ G ++ Sbjct: 61 ALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAAGWSK 120 Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184 + G ++++L A+TV V G + LT EY+++E L + ++K H+Y + Sbjct: 121 PTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQQDFD 180 Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++VFI +LRKKL + G IETV GRGY Sbjct: 181 RDSNVLEVFIGRLRKKL-DPDGELKPIETVRGRGY 214 >gi|320106273|ref|YP_004181863.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924794|gb|ADV81869.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 227 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 93/225 (41%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA +I L+ V G G EL +DAI+LDL L G Sbjct: 1 MRVLLVEDEIRLAENIVDALRETGLAVDHAADGRLGQELALQANYDAIVLDLMLPGKSGQ 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR AKISTP+ IL+ E ++ L SGADDY+SKPF+ EL+AR++A++RR + Sbjct: 61 EVLRGLRHAKISTPILILTAQEGKESVIQLLNSGADDYLSKPFDLGELLARVKALIRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ D+ V+ + V +G+R+ L+ EY+++E L R ++K L HLYD Sbjct: 121 GTADPVLRFSDVEVDTIQQMVTRKGNRLELSPTEYRILEYLVHRPRAVVSKRELLEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E +I+V I LR+KL N G IET+ RGY L E + Sbjct: 181 FDWEHHSNVIEVHISNLRRKL-NVTNGGPVIETLRHRGYRLHEES 224 >gi|254249195|ref|ZP_04942515.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] gi|124875696|gb|EAY65686.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] Length = 223 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 136/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD I+LD+ L + GF Sbjct: 1 MRILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPALDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR K TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQK-QTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ DL ++L + V RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ NA K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223 >gi|319764135|ref|YP_004128072.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330823590|ref|YP_004386893.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317118696|gb|ADV01185.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329308962|gb|AEB83377.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 221 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED + L+ ++ L+ E + + G+ ++ K Y +DAIILDL L + GF Sbjct: 1 MRILIVEDSETLSEALNRSLRIEGYACDIAADGQAALQFLKSYRYDAIILDLMLPRVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+AL + PV +LS ++D+VR L +GADDY++KPF EL+AR+RA+VRR Sbjct: 61 GVLQALGSDAGAAPVLVLSAREQLDDRVRALDAGADDYLTKPFELAELLARLRALVRRPA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+L+V+ ++T +G + LT KEY +ELL R+ L++ HLYD Sbjct: 121 QRDTPVLRHGELAVDPRSRTARWRGDDLKLTPKEYGCLELLLRRQGAVLSRTQIFEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + K+++V + LR KL+ G+ I T G GYVL Sbjct: 181 SSSDASDKVVEVIVSTLRTKLAQCGLGE-LIVTRRGFGYVL 220 >gi|206562306|ref|YP_002233069.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198038346|emb|CAR54301.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 223 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 137/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEAKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR K TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQK-QTPVLLLTARDAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ DL ++L + V RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ NA K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223 >gi|209517909|ref|ZP_03266742.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209501625|gb|EEA01648.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 225 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LAH + ML+ E F + G++ L + +D I+LDL L + G Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDEADRLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR +TPV IL+ SI++KV L +GADDY+ KPF EL+ARI+ +RR Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +V GDLS ++D + ++G +++T +E ++E L LR T+TK ++ ++ Sbjct: 121 PSKAGEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DEP ++++I +LRKKL G I T+ G GY+LR+ D+ Sbjct: 181 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKKEDDQ 225 >gi|170736487|ref|YP_001777747.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818675|gb|ACA93257.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 223 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 136/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD I+LD+ L + GF Sbjct: 1 MRILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPALDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR K TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLRRLRAQK-QTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ DL ++L + V RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ NA K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223 >gi|170727718|ref|YP_001761744.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813065|gb|ACA87649.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 230 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 129/221 (58%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L +++ L N+ V V GE G+ Y +DA I+D+GL + G Sbjct: 1 MRILLVEDDIELQTNLKQHLLDANYTVDVASDGEIGLFQGCEYRYDAGIIDVGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR +I P+ IL+ S +DKV GL +GADDY++KPF EELVAR++A++RRS Sbjct: 61 ALITTLREKEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFQPEELVARLKALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A LI G S+N + V+ I L+G EY++ E L +K + H+YD Sbjct: 121 GKASPLIHNGPFSINTSSLEVKKGERLITLSGSEYKLFEYFMLHPGEVKSKTVLTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+VFI +LRKKL + IET+ G+GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNQYGLIETLRGQGYRL 220 >gi|170690683|ref|ZP_02881849.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170143932|gb|EDT12094.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 225 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LAH + ML+ E F + G+ L + +D I+LDL L + G Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADRLLQSNHYDVILLDLNLPKLSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR +TPV IL+ SI++KV L +GADDY+ KPF EL+ARI+ +RR Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S +V GDL+ ++D + ++G +++T +E ++E L LR T+TK ++ ++ Sbjct: 121 PSKASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DEP ++++I +LRKKL G I T+ G GY+LR+ D+ Sbjct: 181 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKKEDDQ 225 >gi|120555970|ref|YP_960321.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325819|gb|ABM20134.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 223 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 124/230 (53%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD ALA + L+ V V G L +DA++LDLGL D G Sbjct: 1 MKILLVEDDAALAQGLAGSLRDAGLLVEVAGEGRTADFLVSTERYDAVVLDLGLPDGNGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L R I PV IL+ DK G +GADDY++KPF E++ R+RA+VRRS Sbjct: 61 QWLAGWRERGIDLPVLILTARERWSDKAAGFSAGADDYVTKPFETAEILFRLRALVRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA +I GD++++ A V G + LT +E++++ L +++ H+YD Sbjct: 121 GHAHPVITVGDIALDTHAGHVTRSGMPVSLTAQEFRLLSHLIHAAPRIVSRTELSEHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G EP+ +IDV + +LR+KL G IET+ G+GY R N E Sbjct: 181 GDQEPDSNVIDVQVSRLRRKL-----GAQAIETIRGQGY--RMNGHGEPS 223 >gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119] gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp. hominis C80] gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119] gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp. hominis C80] Length = 219 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/220 (41%), Positives = 132/220 (60%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA +EL L + + V + GE G+E +FD IILDL L +I G E+ Sbjct: 4 ILIVEDEQNLARFLELELTHDGYKVDIEYDGEPGLEKALNNDFDLIILDLMLPNINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + STP+ I++ S DKV GL GADDYI KPF EEL ARIRA++RR + H Sbjct: 64 CRRVRQVQ-STPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRR-QPH 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G + +++DA V V G ++ T EY ++ LL+ +N L +E LNH++ Sbjct: 122 KDIIDING-IRIDIDAFKVTVDGKQLDFTKTEYDLLYLLATNRNHVLQREQILNHVWGYN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL + IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLK-PFNKEKVIETVRGVGYVIR 219 >gi|294341402|emb|CAZ89819.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As] Length = 239 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD+ LA + L++ + V G + EFD +ILDLGL + GF Sbjct: 1 MRILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGLPRLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+EDKVRGL GADDY++KPF +EL AR+RA+ RR Sbjct: 61 EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G L ++ + V + GH + L+ +E ++E+L R ++K+ + HL Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ G I TV G GY L Sbjct: 181 WGEEVSTNAIEVYVHRLRKKIEV---GPVRIATVRGLGYCL 218 >gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 224 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 137/226 (60%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED++ + I L+ E + V G++ + + ++DA ILD+ + G+ Sbjct: 1 MRILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADYDAAILDIMMPRRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR TPV L+ SI D+V GL GADDY+ KPF+ +EL+ARIR + R+ Sbjct: 61 EVLKRLRSLGKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTRKRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H S+I GDL ++ + +V V+G R I L+ +EY ++E L+L + L++E NH++ Sbjct: 121 THRTSVIAIGDLRIDTGSHSV-VRGARAIELSSREYAILEYLALNQGKVLSREQIENHVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++DV+I LRKK+ ++ GK I TVWG G++L+E+A Sbjct: 180 NFDYSGGTNVVDVYISYLRKKI-DSGEGKKLIRTVWGTGWMLKEDA 224 >gi|218441529|ref|YP_002379858.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174257|gb|ACK72990.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 224 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 129/223 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A ++ LK + V + GE G + + + +D IILD+ L + G Sbjct: 1 MRILLVEDDERIAKALGETLKDRQYVVDLAFDGEQGWDFIQSFSYDLIILDVMLPKLNGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + LR A TPV +L+ + DKV+GL +GADDY+ KPF+ EL ARIRA++RR Sbjct: 61 DLCQRLRSAGQMTPVLMLTARDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L ++ + K V G +HLT KEY ++EL + L + L HL+ Sbjct: 121 TALPPVLEWENLRLDPNTKEVTYAGKPLHLTPKEYGLLELFLRNSHMVLNRGQILEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D P + + V I +LRKKL + + IETV+G GY L++ Sbjct: 181 FEDPPSEEAVKVHIKELRKKLRSVGASPDSIETVYGLGYRLKQ 223 >gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 227 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 134/227 (59%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+K LA IEL L+ E + V V G +G++ ++D I+LDL L + G E Sbjct: 3 RILLVEDEKNLARFIELELRHEGYEVKVAYDGREGLQSALEEDWDVILLDLMLPKLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR K TPV +++ SI D+V GL GADDYI KPF EEL+AR+RAI RR Sbjct: 63 VCRRLRQEK-ETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIFRRMEY 121 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + A + DL + +++ V+ G I LT +EY ++ L KN +T+E LN Sbjct: 122 AEPKKAALTTYKFRDLVLEKESRLVKKAGKTIELTKREYDLLLTLLENKNIVMTREALLN 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E E ++DV+I LR K+ + G +YI+TV G GYV+RE Sbjct: 182 KVWGYETEVETNVVDVYIRYLRNKI-DTEGEDSYIQTVRGTGYVMRE 227 >gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 228 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 134/223 (60%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD ++ + LK E + V G+ G+ L +DA ++D+ L ++ G Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 ++R LR + + PV LS +S+ED+V+GLQ+G DDY++KPF EL AR++A++RR S Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + + GD++++L ++TV V G + L +E+ ++E L +TK M L H++ Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ ++DV + +LR K+ K IET+ G GYV + Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDP---DKTRIETLRGVGYVFK 225 >gi|296137109|ref|YP_003644351.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295797231|gb|ADG32021.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 239 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD+ LA + L++ + V G + EFD +ILDLGL + GF Sbjct: 1 MRILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGLPRLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+EDKVRGL GADDY++KPF +EL AR+RA+ RR Sbjct: 61 EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G L ++ + V + GH + L+ +E ++E+L R ++K+ + HL Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ G I TV G GY L Sbjct: 181 WGEEVSTNAIEVYVHRLRKKIEV---GPVRIATVRGLGYCL 218 >gi|325981914|ref|YP_004294316.1| two component transcriptional regulator, winged helix family [Nitrosomonas sp. AL212] gi|325531433|gb|ADZ26154.1| two component transcriptional regulator, winged helix family [Nitrosomonas sp. AL212] Length = 228 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 136/219 (62%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ L + I L++ + + G++G+ L Y DA I+D+GL G Sbjct: 1 MRILVIEDEFKLQNQIRQQLETAGYMIDTCSDGDEGLFLASEYPLDAAIIDIGLPGKSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ LR P+ IL+ SS +DKV+GL+ GADDY++KPF EEL+AR++A++RR+ Sbjct: 61 EIIKTLRERGNLLPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELLARVKALLRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+L+ G ++V++ A++V + I LT EY+++E L L+K ++LY Sbjct: 121 GIPQTLLKCGPITVDVTAQSVAINEVEIELTSFEYRLLEELVRHHGEVLSKHTLSDYLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +++V I +LR+KL + G N IET+ GRGY Sbjct: 181 HDEDRDSNVLEVMIGRLRRKL-DPDGTLNPIETMRGRGY 218 >gi|313898964|ref|ZP_07832491.1| response regulator MprA [Clostridium sp. HGF2] gi|312956163|gb|EFR37804.1| response regulator MprA [Clostridium sp. HGF2] Length = 242 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L ED++ L + L+ E + V G + +E ++DA+ILD+ + + G+ Sbjct: 19 MRLLFAEDERDLNEIVCQKLRKEGYTVDACFDGAEALEFLAVADYDAVILDIMMPVMDGY 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR TPV LS SIED+V GL SGA+DY+ KPF+ EL+ARIR ++R S+ Sbjct: 79 AVLKQLRAEGRMTPVLFLSARDSIEDRVLGLDSGANDYLIKPFSFAELMARIRTMIRLSK 138 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G SL+ GDL+++ TV I L+ KEY ++E + L KN L++E H++D Sbjct: 139 GSQTSLLQVGDLTLDTATHTVHRANKLILLSAKEYALLEYMLLNKNIVLSRETIEEHIWD 198 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++DV+I LRKK+ A+ K I TV G GYV++E Sbjct: 199 FDYAGGTNLVDVYISYLRKKIDGASTCK-LIHTVRGSGYVIKE 240 >gi|78222245|ref|YP_383992.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78193500|gb|ABB31267.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 224 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 137/225 (60%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+K +A ++ L+ F V + GE+G+ + + Y +DA++LD+ L + G Sbjct: 1 MKILIIEDEKRMAGILKKGLEENAFIVDLAGDGEEGLYMAENYPYDAVLLDIMLPVMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ALR + PV +++ IE +++GL GADDYI KPF+ EL+AR+++++RRS+ Sbjct: 61 SILSALRSKRSEVPVLLITARGEIESRIKGLNFGADDYIVKPFDFHELLARLKSVIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L+ DLS++ ++++V G I L+ EY ++E L+L +++ H+YD Sbjct: 121 GRPSPLVAIDDLSLDTNSRSVCRGGREIRLSATEYNLLEYLALNSGRVISRTELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +IDV++ LR KL + + I TV G GY+L+ +A Sbjct: 181 TDFDRDSNVIDVYVNHLRNKL-DKGFDRQLIHTVRGAGYILKGDA 224 >gi|94501865|ref|ZP_01308376.1| hypothetical protein RED65_02198 [Oceanobacter sp. RED65] gi|94425998|gb|EAT10995.1| hypothetical protein RED65_02198 [Oceanobacter sp. RED65] Length = 221 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 138/224 (61%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ALA ++ LK+ N+ D + G+ + +D ++LDLGL+D G Sbjct: 1 MRILLLEDDQALADGLKQSLKNHNYACDQFDTIKAGMSAFEQESYDLVLLDLGLSDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ +R K +TPV IL+ IEDK++GL GADDY+ KPF+ EL+AR+RA++RRS Sbjct: 61 NFLQHVR-KKSATPVMILTARDQIEDKIKGLDLGADDYMPKPFDVNELLARMRALLRRSV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + I L++NL A+T+ + I L+ +E+ ++E L+ ++ +T+ + LY Sbjct: 120 GESSNNITVQGLNINLQARTLSFENRDISLSRREFNLLEALATHQDKVMTRSQLEHSLYS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DE E ++V I LRKKL A I+TV G GY+++++ Sbjct: 180 WDDEIESNALEVHIHNLRKKLPVA-----IIKTVRGVGYMIKKS 218 >gi|323528863|ref|YP_004231015.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385865|gb|ADX57955.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 225 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ L+H + ML+ E F + G+ L + +D I+LDL L + G Sbjct: 1 MKLLLIEDNPTLSHWLAKMLEQEAFALDAVQDGDSADRLLQTNHYDVILLDLNLPKLSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR +TPV IL+ SI++KV L +GADDY+ KPF ELVARI+ +RR Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELVARIKVAIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S +V GDL+ ++D + ++G +++T +E ++E L LR T+TK ++ ++ Sbjct: 121 PSKASEVVCGDLAFDIDTRQFTLKGMPLNVTPRERTVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DEP ++++I +LRKKL G I T+ G GY+LR+ D+ Sbjct: 181 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKKEDDQ 225 >gi|296284705|ref|ZP_06862703.1| two-component response regulator [Citromicrobium bathyomarinum JL354] Length = 225 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V ++ GEDG L ++DA+ILDLGL +I G Sbjct: 1 MRILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHYLGSTEDYDAVILDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TVLGMWRKEGRRFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S + GD+ ++ + V G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNTSSELTAGDVRLDTRSGRVTRGGDPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL G I T+ G GY L + A Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GAEVITTIRGLGYSLDDPA 220 >gi|119469337|ref|ZP_01612276.1| response regulator in two-component regulatory system with PhoQ [Alteromonadales bacterium TW-7] gi|119447201|gb|EAW28470.1| response regulator in two-component regulatory system with PhoQ [Alteromonadales bacterium TW-7] Length = 224 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD LA ++ L+ E ++V + GE G+ Y D ++DLGL I G Sbjct: 1 MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ R ++ P+ IL+ +DKV GL +GADDY++KPF+ EEL AR A++RRS Sbjct: 61 ELINKARAQGVTIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELAARCNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + G + ++ ++ V V + LT EY+++E L + ++K H+YD Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVDDKELTLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+VF+ +LRKKL + G N +ET+ GRGY L+ Sbjct: 181 QDFDLDSNVIEVFVLRLRKKL-DPEGTLNPVETLRGRGYRLK 221 >gi|119776435|ref|YP_929175.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119768935|gb|ABM01506.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 224 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 137/227 (60%), Gaps = 13/227 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF----YEFDAIILDLGLTD 56 MR+LL+EDD ALA ++ L+ N+Y D+ DG EL F Y++DA I+D+GL Sbjct: 1 MRLLLVEDDAALAANLGDHLRE---NLYSVDVAADG-ELGLFQGLEYDYDAAIIDVGLPK 56 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G ++ LR P+ IL+ S EDKV GL +GADDY++KPF+ EL +R++A++ Sbjct: 57 LDGISLVTKLRAEGREFPILILTARDSWEDKVEGLDAGADDYLTKPFHPRELASRLKALI 116 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RRS G A +I G +++N + V + G R+ L+ E+++++ L + + +K M Sbjct: 117 RRSAGKASPVIENGPVTLNTASGEVLLNGERVSLSASEFRLLQFLMMHRGEVQSKTMLTE 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKL--SNAAGGKNYIETVWGRGYVL 221 H+YD + + +I+VFI +LRKKL N G IET+ G+GY L Sbjct: 177 HIYDQDFDLDSNVIEVFIRRLRKKLDPDNELG---LIETLRGQGYRL 220 >gi|160898196|ref|YP_001563778.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160363780|gb|ABX35393.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 221 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD AL I L++E + V GE + ++D +LDLGL PG Sbjct: 1 MRVLVVEDDPALRLGICRRLQAEGWQVDAVTDGEYALTATATQDYDIAVLDLGLPRRPGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRA R + + V IL+ +++++ GL GADDY++KPF EELVAR+RAIVRRS Sbjct: 61 EVLRAWRAQRKALAVLILTASDGLQNRLLGLNEGADDYLAKPFEPEELVARMRAIVRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +L+ G LS N D + + +QG R+ L+ +E ++ELL + K ++ + Sbjct: 121 GGASNLLTVGALSFNTDTRELFLQGERLALSPREAALLELLISAPGAAVPKSRIISTMSS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++++I KLR+KL AG I T+ G GYVL Sbjct: 181 WEANFSANAVEIYILKLRRKL---AGAGVRIVTLRGIGYVL 218 >gi|119896748|ref|YP_931961.1| two-component response regulator [Azoarcus sp. BH72] gi|119669161|emb|CAL93074.1| two-component response regulator [Azoarcus sp. BH72] Length = 228 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 130/228 (57%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD A I L+ V V G DG+ L FDAI+LD L + G Sbjct: 1 MKILLVEDDAQQAGYIRKGLQEAGHTVDVAADGRDGLFLATTASFDAIVLDRMLPRVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR ++I+TPV +LS + ++D+V GL++G+DDY+ KPF EL+AR+ A+ RR Sbjct: 61 TVLRTLRASRIATPVVVLSALGEVDDRVAGLRAGSDDYLVKPFALSELLARLDALQRRGN 120 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A Q+ + T DL ++L ++V RI L KE++++E L +T+ M L Sbjct: 121 GRAEAEQTRLQTADLEMDLLRRSVSRGATRIELKPKEFRLLEFLLRHSGQVVTRSMLLEA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D +P+ +IDV I LR K+ + G I TV G GY L +A Sbjct: 181 VWDYHFDPQTNVIDVHISNLRAKI-DLPGLPPLIHTVRGAGYRLGGDA 227 >gi|160898155|ref|YP_001563737.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160363739|gb|ABX35352.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 221 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 132/224 (58%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED + LA ++ L+SE Y D DG+ KF Y +DAIILDL L + Sbjct: 1 MRVLIVEDSQTLAEALSQSLQSEG---YACDTAADGVSALKFLASYRYDAIILDLMLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VLRAL + PV +LS ++D+VR L +GADDY++KPF EL+AR+RA+VR Sbjct: 58 DGFGVLRALSREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ GDL V+ ++T +G + LT KEY +++LL R+ TL++ H Sbjct: 118 RPPQRDVPVLRHGDLEVDPRSRTARFKGIDLGLTPKEYGLLDLLLRRRGATLSRPQIFEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LYD R + K+++V + LR KL+ G I T G GY+L Sbjct: 178 LYDSRSDASDKVVEVIVSTLRTKLAQ-CGLDELIVTRRGFGYIL 220 >gi|117621514|ref|YP_855892.1| transcriptional regulatory protein PhoP [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562921|gb|ABK39869.1| transcriptional regulatory protein PhoP [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 235 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDDK L H + +L V+ TD + + Y D I+DLGL D+ G Sbjct: 12 MKILLVEDDKLLNHHLSTLLTEAQNQVHSTDSAQVALHYAADYPIDVAIIDLGLPDMDGL 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR +I P+ +L+ + +DKV GL++GADDY+ KPF K+EL+AR+ A+VRRS Sbjct: 72 QLIRQLREQQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSA 131 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 G + GD ++L K + + G + LT EY ++E L ++K+ L+ LY Sbjct: 132 GFISPRVKAGDYELDLSRKELTIAGTPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DG +P I+V + +LRKKL + G I T+ +GY+ Sbjct: 192 DGEGDPNT--IEVMVSRLRKKL-DPEGTIQPISTIRRQGYIF 230 >gi|319947435|ref|ZP_08021667.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746375|gb|EFV98636.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 224 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 137/223 (61%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ L SI +LK++ ++V G++ ++ + ++D II D+ + + G Sbjct: 1 MKVLVIEDEVDLNRSIVKLLKTQQYSVNAAYDGQEALDYIRVSQYDVIISDIMMPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 VL LR +I TPV +L+ S+EDKV GL +GADDY+ KPF +EL+ARIR ++RR + Sbjct: 61 GVLSYLRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRRNN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + +L+ GD S++L KT++ +G + LT KEY+++E L N L++E H++ Sbjct: 121 RENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D E IIDV + +RKKL N + I+T G GYV + Sbjct: 181 DFDYVGESNIIDVLVKNIRKKLGNPS----IIQTKRGMGYVFK 219 >gi|302870967|ref|YP_003839603.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573826|gb|ADL41617.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 224 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 134/223 (60%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED ++LAH+I L+ ++ +T G++G+ +D IILD+ L I G Sbjct: 1 MRILIVEDQESLAHTIARRLQEVGYSTDITFDGQEGLHFATSTSYDLIILDIMLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R+ I TPV L+ SIED+V GL +GADDY+ KPF+ +EL+ARIRA++RR Sbjct: 61 NLLKLIRLKGIQTPVLCLTAKDSIEDRVIGLDAGADDYLVKPFSFDELLARIRALLRRYA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL ++ ++ V G I LT KEY ++E L+ K LT+ H+++ Sbjct: 121 QTREPIIKVKDLVIDTNSHKVTRAGKLIELTSKEYSILEYLARNKGRVLTRSQIAEHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E I+DV+I LR+K+ + K I T+ G GY+LR+ Sbjct: 181 YDFEGTSNIVDVYIRYLRRKIDDGFPEK-LIYTIRGVGYMLRD 222 >gi|309777924|ref|ZP_07672867.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308914322|gb|EFP60119.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 224 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ L + LK E ++V G++ +E E+D IILD+ + + G+ Sbjct: 1 MRLLLAEDERDLNELVCRKLKKEGYSVDACYDGQEALEYAAVTEYDGIILDIMMPKVNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR K TPV L+ +IED+V GL SGA+DY+ KPF+ EL ARIR ++R ++ Sbjct: 61 EVLKRLRAEKNMTPVLFLTARDAIEDRVLGLDSGANDYLIKPFSFAELTARIRTMIRLAK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + GDL ++ TV + L+ +EY ++E + L KN L++E NH++ Sbjct: 121 GSATTHLQAGDLILDTATHTVHRGEKLLLLSAREYALLEYMLLNKNIVLSREKIENHIWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++DV+I LRKK+ K I TV G GYVL+E Sbjct: 181 YEYEGGTNLVDVYISYLRKKVDGGFSCK-LIYTVRGSGYVLKE 222 >gi|160879763|ref|YP_001558731.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428429|gb|ABX41992.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 227 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/224 (41%), Positives = 136/224 (60%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED+K +A ++ +L+ N+ V + GE G++ +D IILD+ L + G Sbjct: 1 MRILLIEDEKYMAEAVAQVLRKNNYTVDLAHDGEYGLDCALSAIYDIIILDIMLPKMNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LR KI+TPV +LS EDKVRGL +GADDY+ KPF EEL+AR+RA+ RR + Sbjct: 61 DVLKSLRREKIATPVILLSAKGETEDKVRGLDTGADDYLPKPFKTEELLARLRALGRR-K 119 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + ++ GD+ +N + V LT KE Q++ELL K ++K + L Sbjct: 120 GEIIPEGILSYGDIELNPNTLDVYCGKKTYKLTLKESQLLELLMNMKGMVISKNYIIEKL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E E ++V+I LRKKL+ A G N I+T+ G GY+L+ Sbjct: 180 WGFDGEAEDNHVEVYISFLRKKLA-ALGSTNTIQTIRGLGYMLK 222 >gi|192359014|ref|YP_001981290.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] gi|190685179|gb|ACE82857.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] Length = 227 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 131/219 (59%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+++L I ++ +E + G DG+ L Y++D I+DLGL + G Sbjct: 1 MRLLVVEDEQSLREQIASLVAAEKYACDTAADGRDGLFLGCEYDYDLAIIDLGLPLMDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR + P+ IL+ + +DKV+GL++GADDY++KPF+ EEL ARI A++RR+ Sbjct: 61 TVIRELRAKGRNFPILILTARGNWQDKVQGLEAGADDYLTKPFHPEELKARIHALLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G ++++ AK V G + LTG EY + L++ ++K HLY Sbjct: 121 GHASSQLNYGPITIDTSAKRVYRDGAEVELTGFEYNTLTYLAMHPGKNISKLELTEHLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +I+VF+ +LRKKL + G N I T G GY Sbjct: 181 QDYDRDSNVIEVFVGRLRKKL-DPDGSLNLISTQRGLGY 218 >gi|119774679|ref|YP_927419.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119767179|gb|ABL99749.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 224 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 129/219 (58%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V + ++G Y D I+DLGL D G Sbjct: 1 MRILVVEDDPLLSHHLKVQLSELGNQVQVANTAQEGFYQATNYPIDVAIVDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ LR A++ P+ IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 ELITRLRDAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I +G L ++L AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 121 GFVKPRITSGSLELDLAAKQVTLDSEVLEITAFEYLILEYLMRHSHEVVAKQRLLDVIY- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G N I T+ G+GY Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTR-DGMDNPIVTIRGQGY 217 >gi|322389092|ref|ZP_08062657.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321144228|gb|EFX39641.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 224 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 137/223 (61%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ L SI +LK++ ++V G++ ++ + ++D II D+ + + G Sbjct: 1 MKVLVIEDEVDLNRSIVKLLKTQQYSVDAAYDGQEALDYIRVSQYDVIISDIMMPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 VL LR +I TPV +L+ S+EDKV GL +GADDY+ KPF +EL+ARIR ++RR + Sbjct: 61 GVLSYLRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRRNN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + +L+ GD S++L KT++ +G + LT KEY+++E L N L++E H++ Sbjct: 121 RENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D E IIDV + +RKKL N + I+T G GYV + Sbjct: 181 DFDYVGESNIIDVLVKNIRKKLGNPS----IIQTKRGMGYVFK 219 >gi|148656746|ref|YP_001276951.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148568856|gb|ABQ91001.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 231 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 128/228 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ LAH++ L+ + + V GE G EL E+D IILDL L + G Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR + IL+ E++V GL +GADDY+ KPF+ EL+ARIRA++RR Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q L+ DL ++ +TV + R++LT KE+ ++ L + +T+EM L H++D Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G P + V I LR+KL + YIETV G GY L + E Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRLGNAGESE 228 >gi|145298334|ref|YP_001141175.1| two-component system responsse regulator PhoP [Aeromonas salmonicida subsp. salmonicida A449] gi|142851106|gb|ABO89427.1| two-component system responsse regulator PhoP [Aeromonas salmonicida subsp. salmonicida A449] Length = 224 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDDK L H + +L V+ TD + + Y D I+DLGL D+ G Sbjct: 1 MKILLVEDDKLLNHHLATLLTEAQNQVHSTDNAQVALHYATDYPIDVAIIDLGLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR +I P+ +L+ + +DKV GL++GADDY+ KPF K+EL+AR+ A+VRRS Sbjct: 61 QLIRQLRERQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 G + GD ++L K + + G + LT EY ++E L ++K+ L+ LY Sbjct: 121 GFISPRVKAGDYELDLSRKELTIGGEPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DG +P I+V + +LRKKL + G I T+ +GY+ Sbjct: 181 DGEGDPNT--IEVMVSRLRKKL-DPEGNIQPISTIRRQGYIF 219 >gi|293376013|ref|ZP_06622270.1| putative transcriptional regulatory protein CutR [Turicibacter sanguinis PC909] gi|325841065|ref|ZP_08167248.1| transcriptional regulatory protein CutR [Turicibacter sp. HGF1] gi|292645369|gb|EFF63422.1| putative transcriptional regulatory protein CutR [Turicibacter sanguinis PC909] gi|325490082|gb|EGC92426.1| transcriptional regulatory protein CutR [Turicibacter sp. HGF1] Length = 224 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 131/221 (59%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+K + +++ L+ E + V VT GE+ +EL F ++ ++LD+ L I GF Sbjct: 1 MRLLIIEDEKDILLALQKGLQKEGYAVDVTGDGEEALELLNFNTYNLVVLDINLPSIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR ++T V I+S IEDK+RGL GA+DY+ KPF+ EL ARIRA++RR Sbjct: 61 SILEILREKDMTTRVIIVSANREIEDKIRGLDLGANDYLVKPFDFSELKARIRALLRREF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I G+L ++L V ++LT KEY +++ L K ++ E + H++D Sbjct: 121 TSVPTIIKEGELCLDLATHKVTFNDQILNLTLKEYSILKYLIQNKGRIVSSEELIQHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +I V I LRKKL +G N I+T+ G GY+ Sbjct: 181 ENADPFTTVIRVHIYSLRKKLITISGKDNIIQTIKGVGYLF 221 >gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603] gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603] gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121] Length = 219 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K LA IEL L EN+ V + + G G++ +D IILDL L +I G E+ Sbjct: 4 ILIVEDEKNLARFIELELTHENYQVDIENDGATGLDKALNKTYDLIILDLMLPNINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + +TP+ I++ S DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 64 CRQIRQQQ-TTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ--P 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + I + ++ +A V V G ++ LT EY + +L+ KN L +E LNH++ Sbjct: 121 KKDTININGIIIDKEAFEVTVDGTQLDLTKTEYDLFYVLAENKNHVLQREQILNHVWGYN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL G IETV G GYV+R Sbjct: 181 TEVETNVVDVYIRYLRNKLK-PFGKDKVIETVRGVGYVIR 219 >gi|163858914|ref|YP_001633212.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163262642|emb|CAP44945.1| two-component response regulator [Bordetella petrii] Length = 224 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED++ LAH ++ L N+ V + G DG +D ++LD+ L I GF Sbjct: 1 MRILVIEDERKLAHYLQKGLTEHNYVVDIASNGVDGRHAALEGNYDLVVLDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR K TPV +L+ +ED+VRGL++GADDY+ KPF EL+ARI+A++RR R Sbjct: 61 WILKDLRETK-DTPVLMLTARDKVEDRVRGLENGADDYLVKPFAFSELLARIQALLRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +L+ GDL ++L + G R+ LT KE+ ++ LL R+ L++ M ++D Sbjct: 120 GQESTLLKLGDLELDLARRKAHRAGMRLDLTAKEFTLLALLLRRQGQVLSRTMLAEQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+V + +LR K+ + + + TV G GYVL E + Sbjct: 180 MNFDSDTNAIEVAVRRLRAKIDDPF-DRRLLHTVRGMGYVLEERGE 224 >gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 225 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 132/223 (59%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED++ LA I LK E F V V GE+G+ + FD +ILD+ L G+ Sbjct: 3 VRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+++R ++TPV +L+ +S +E +V+GL GADDY+ KPF+ EL+AR+RA++RR Sbjct: 63 EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL ++ K G I LT KEYQ++E L + KN +TKE HL+ Sbjct: 123 ESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE ++ I LRKK+ K I TV G GYV R+ Sbjct: 183 FDDEVFSDVLRSHIKNLRKKVDKGFKRK-IIHTVRGIGYVARD 224 >gi|261867820|ref|YP_003255742.1| transcriptional regulatory protein QseB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413152|gb|ACX82523.1| transcriptional regulatory protein QseB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 223 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 136/230 (59%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + + I++ L F V + TD G+ G+E + +DA++LDL L + G Sbjct: 1 MRILLIEDDPLIGNGIQIGLTKSGFAVDWFTD-GKTGLEAAQSAPYDAVVLDLTLPKMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+A R PV IL+ ++++++ GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 60 LDVLQAWRKNGQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GHA +I + + + + V + I LT +EY+++EL L K LT++ + LY Sbjct: 120 YGHANPIIQHSRVKFDPNQRKVFLCDQEIALTTREYKLLELFMLNKERVLTRDFIEDKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + +E ++V I LR+KL GK +I TV G GY L +N DET Sbjct: 180 NWDNEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKN--DET 222 >gi|303229816|ref|ZP_07316596.1| putative response regulator ArlR [Veillonella atypica ACS-134-V-Col7a] gi|303231718|ref|ZP_07318441.1| putative response regulator ArlR [Veillonella atypica ACS-049-V-Sch6] gi|302513667|gb|EFL55686.1| putative response regulator ArlR [Veillonella atypica ACS-049-V-Sch6] gi|302515576|gb|EFL57538.1| putative response regulator ArlR [Veillonella atypica ACS-134-V-Col7a] Length = 224 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ L L++EN V G+ I+ +D I++D+ + + G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPVLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R +TPV +L+ S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ Sbjct: 61 SALAQMRNEGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HAQ+ I G L++N+ +TV+ G I LT KE+ ++ L+ +N L+++ L+H+++ Sbjct: 121 RHAQNDIKVGPLTINVPQRTVKRDGEAITLTAKEFDLLYYLASNENIVLSRQQILDHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +IDV+I LRKK+ K I+TV G GYVL+ Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTDENVK-LIQTVRGVGYVLK 221 >gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 225 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ L + LK E ++V + G DG+E K +D IILD+ L +I G Sbjct: 1 MRILVVDDEPYLTDLLNKALKEEGYSVDIAQNGIDGMECAKMNVYDVIILDIMLPEIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR I+TP+ +L+ +++DKV+GL +GADDY++KPF EL ARIRA++RR + Sbjct: 61 QILKNLRNMNINTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRREQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL VN V G I LT KEY ++E + LT+ ++H++ Sbjct: 121 PSKSPILKIADLEVNTLTHDVRRGGKIITLTSKEYSLLEYMMRNSGRVLTRSQIVDHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IIDV+I LRKK+ + K I+T+ G GY L+E Sbjct: 181 YEFDGLSNIIDVYIRYLRKKIDDNFDIK-LIQTIRGSGYCLKE 222 >gi|222087598|ref|YP_002546135.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221725046|gb|ACM28202.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 218 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S++ L+ + V GE G+E + +F AI+LD+ L + G Sbjct: 1 MRVLLVEDDNILGSSLKKALEKHAYGVDWMRDGESGLEAAQHSDFAAIVLDINLPRLSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R S PV +L+ + ++ KV GL GADDY+ KPF+ +EL+AR+RA++RR Sbjct: 61 EVLRGIRQRGNSVPVLLLTALDAVRQKVEGLDEGADDYLVKPFDLDELLARMRALIRRRD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +S+I GD+ V+ A ++H T KE+ +++LL R +TK LYD Sbjct: 121 GRTESVIRCGDIEVDPSAMVARKGDVQVHTTAKEFHLLKLLMERSGRYVTKNDIEYALYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E I+V I LRKKL G ++I+++ G GY++ Sbjct: 181 AESTVESNTIEVTIYNLRKKL-----GSDFIKSIRGVGYMI 216 >gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family [Cupriavidus metallidurans CH34] Length = 223 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/225 (40%), Positives = 127/225 (56%), Gaps = 11/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRILLIED+ LA + L YV D DGI+ L +DA+ILDLGL + Sbjct: 1 MRILLIEDEATLARQLADTLSQAG---YVVDHASDGIDAEHLGTENPYDAVILDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ R A PV IL+ S +KV G+ +GADDY++KPF EEL+ARIRA++R Sbjct: 58 DGLTVLKRWRQAGNGVPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS GH ++V G +++ V V G I LT EY++++ L + ++K H Sbjct: 118 RSTGHTSPVLVCGPVTLAPATGQVSVDGSPIVLTAHEYKVLDYLMHHQGVIVSKTTLTEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +Y + + I+VF+ +LR+KL G + IETV G GY LR Sbjct: 178 IYAQDHDRDSNTIEVFVGRLRRKL-----GVDVIETVRGLGYRLR 217 >gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 219 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 133/220 (60%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA IEL L EN+NV + + G G++ +D IILDL L +I G E+ Sbjct: 4 ILIVEDEQNLARFIELELTHENYNVDIENDGRTGLDKALNKSYDLIILDLMLPNINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + STP+ I++ DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 64 CRQIR-QEYSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ--P 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + +I + ++ DA V V G ++ LT EY ++ +L+ +N + +E L+H++ Sbjct: 121 QKDVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGFN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL K+ IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219 >gi|303249046|ref|ZP_07335290.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] gi|302489569|gb|EFL49510.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] Length = 223 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 135/224 (60%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A I L+ F V G DG+ L + ++D+ L + G Sbjct: 1 MRILLVEDDEKIASFIIGGLRQSGFAVDHAANGLDGLHLAATEPYAVAVIDVMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ LR K++TP+ ILS S+ED+VRGL++G+DDYISKPF+ EL+AR++A++RRS Sbjct: 61 KVIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRSS 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ +T G+LS+NL + V + L +E+ ++E L+K M + H++ Sbjct: 121 SVSEPTRLTVGELSMNLLTREVHRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ ++DV +C+LR K+ + + + T+ G GYVL+E Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKI-DRDWDRKMLHTLRGVGYVLKE 223 >gi|163752506|ref|ZP_02159693.1| transcriptional regulatory protein PhoP [Shewanella benthica KT99] gi|161327598|gb|EDP98795.1| transcriptional regulatory protein PhoP [Shewanella benthica KT99] Length = 224 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 130/219 (59%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 1 MRILVVEDDPILSHHLQVQLSELGNQVQVALTAKEGFYQATNYPIDVAIIDLGLPDQDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR A + P+ IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 SLIENLRDAGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I +GDL ++L AK + ++G + +T EY ++E L + + K+ L+ +Y Sbjct: 121 GFVRPKITSGDLELDLAAKQLSMKGVPMDITAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G +N I T+ G+GY Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-EGLENPIATIRGQGY 217 >gi|220924050|ref|YP_002499352.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219948657|gb|ACL59049.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 225 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ L + L+ + V GE+G L + +D IILD+GL G Sbjct: 1 MRLLVVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAFLGETEPYDCIILDMGLPKQDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A++ TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RAI+RR+ Sbjct: 61 TVLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G + LT EY+++ L +++ HLYD Sbjct: 121 GHASSQISAGPVTLDTRSGRVFVDGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LRKKL+ + I+TV G GY++ A Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLIDPGA 220 >gi|89901889|ref|YP_524360.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346626|gb|ABD70829.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 239 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 128/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA + L+ E + V D G D K +++ IILDL L + G Sbjct: 16 MRILVVEDNTELAQWLGRTLRKEQYTVDCIDNGADADFALKSEKYNLIILDLALPKLDGK 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR TPV IL+ ++I+ +V L GADDY++KPF EEL ARIR ++RRS Sbjct: 76 EVLRRLRARDDQTPVLILTANNTIQSRVSKLDQGADDYMAKPFEIEELEARIRMLLRRSS 135 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A LI GDLS N + + + + LT +E ++E+L + TT+TK L+ Sbjct: 136 GQASPLIACGDLSYNTNTREFHISQQLLALTPRERAVLEMLLRKSGTTVTKHALAQSLFS 195 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ I++++ +LRKKL +++ I T+ G GY+LR Sbjct: 196 LSEDASTDAIEIYVHRLRKKLEHSSA---QIMTLRGLGYLLR 234 >gi|239909225|ref|YP_002955967.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239799092|dbj|BAH78081.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 223 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 132/224 (58%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A I L+ F V G DG+ L + I+D+ L + G Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ LR KI TP+ ILS S+ED+VRGL++G DDY+SKPF+ EL+AR++A++RRS Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ +T G+LS+NL + V + L +E+ ++E L+K M + H++ Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ ++DV +C+LR K+ K + T+ G GYVL+E Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRK-MLHTLRGVGYVLKE 223 >gi|296120277|ref|YP_003628055.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296012617|gb|ADG65856.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 235 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 134/227 (59%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++ED L ++ ML+ E + V GE G+ +E+D I+LD L + GF Sbjct: 1 MRALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR K STPV +L+ + D+V+GL GADDY+ KPF++ EL+AR+RA++RR+ Sbjct: 61 DLLKQLRTKK-STPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAA 119 Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++SL+ G +++NL + V I LT +EY + E L+L + + + +H++ Sbjct: 120 GESESLLELGQGVTINLIHRKVFRDDVEIVLTAREYSIFEYLALHRGRVVPRTDLYDHIF 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D DE ++DV I LR+KL G++ IET G GY++ A Sbjct: 180 DENDESLSNLLDVHISNLRRKL-----GRDVIETRRGLGYIIHSQAS 221 >gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family [Alkalilimnicola ehrlichii MLHE-1] Length = 226 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ AL + L + V G +G+ + + Y D I+DLGL G Sbjct: 1 MRLLVVEDEPALRRQLADALGRAGYVVDQAADGREGLHMARDYPLDLAIIDLGLPRFSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++RALR + PV +L+ +D+V GL++GADDY+ KPF EL+AR++A++RR+ Sbjct: 61 ELIRALRADGRTLPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ L+++ ++T G RI LTG E++++ + L + L+K HLY Sbjct: 121 GWADPVLRCPPLALDTRSQTAWRDGARIELTGSEFRLLHYMMLHQGAVLSKTRLEEHLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +++VFI +LR+KL + G IET+ GRGY LR Sbjct: 181 DAAEHDSNVMEVFIRRLRRKL-DPDGTLQPIETLRGRGYRLR 221 >gi|330824369|ref|YP_004387672.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|329309741|gb|AEB84156.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 227 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 133/227 (58%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED +A S++ L++E F+V V GEDG L FD +ILDL L G Sbjct: 1 MRILIIEDQSKVAQSVKHGLEAERFDVTVAATGEDGFFLVSSQVFDLLILDLMLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR ++TPV ILS ++ D++RGL GADDY+ KPF EEL+ARIRA++RR R Sbjct: 61 EILRTLRSRGLATPVIILSARDTVGDRIRGLDLGADDYLVKPFAFEELLARIRALLRRGR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL V+ + V G + LT EY++++ L L + +++EM ++ Sbjct: 121 AQDVLRLKVADLEVDRVTRRVARGGQDVELTAHEYELLDYLLLHQGRVVSREMLARDVWR 180 Query: 181 --GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 R P +IDV I +LR+K+ N G I TV G G+VL+E A Sbjct: 181 EVARATPLDNVIDVHIARLRRKIDNGH-GHPLIHTVRGVGFVLQEQA 226 >gi|282849614|ref|ZP_06258998.1| response regulator receiver domain protein [Veillonella parvula ATCC 17745] gi|282580551|gb|EFB85950.1| response regulator receiver domain protein [Veillonella parvula ATCC 17745] Length = 224 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 133/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ L L++EN V G+ I+ +D I++D+ + + G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R +TPV +L+ +S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKNSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HAQ+ I G L++N+ +TV+ G I LT KE+ ++ L+ +N L+++ L+H+++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +IDV+I LRKK+ K I+TV G GYVL+ Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTDENVK-LIQTVRGVGYVLK 221 >gi|170742557|ref|YP_001771212.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168196831|gb|ACA18778.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 227 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ L + L+ + V GE+G L + +D IILD+GL G Sbjct: 1 MRLLIVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAYLGETEPYDCIILDMGLPKQDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A++ TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RAI+RR+ Sbjct: 61 TVLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G + LT EY+++ L +++ HLYD Sbjct: 121 GHASSQISAGPVTLDTRSGRVFVNGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ +LRKKL+ + I+TV G GY++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLI 216 >gi|302876257|ref|YP_003844890.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307686989|ref|ZP_07629435.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579114|gb|ADL53126.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 225 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 134/222 (60%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L+IEDDK L SI + SE+F GE+G+ + + +D IILD+ L I G+ Sbjct: 1 MKALIIEDDKFLLESICQSI-SEDFEYEYAMDGEEGLYMAEQNIYDVIILDIMLPSIDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR A + TPV IL+ SI+DK++G + GADDY+ KPF++EEL+ R+ AI+RR+ Sbjct: 60 GILGKLREASVFTPVLILTAKDSIDDKIKGFKLGADDYLVKPFHREELLLRLEAIIRRNG 119 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + ++T DLS+N KTV + I L GK++ ++E L + LTKE + ++ Sbjct: 120 NHLKDHVLTFKDLSLNTKNKTVFINDSEIFLQGKQFDILEYLLNNQGAILTKEQIFDRIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + V +++V+ LRK L A G YI+TV G GY+L Sbjct: 180 GFNSDTTVSVVEVYASNLRKSLK-AHGYDKYIKTVRGLGYML 220 >gi|268319896|ref|YP_003293552.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|262398271|emb|CAX67285.1| two-component system response regulator [Lactobacillus johnsonii FI9785] Length = 242 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL L+ E + V G G++L +FDAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 63 IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q +I DL++ + V + LT +EY ++ L KN +T+E Sbjct: 122 EKRAMGDTMGVQKVIHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 LN ++ + E +++V++ LR K+ + G +YI+TV G GY++R + DE E Sbjct: 182 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 239 >gi|54309587|ref|YP_130607.1| putative transcriptional regulatory protein PhoP [Photobacterium profundum SS9] gi|46914025|emb|CAG20805.1| putative transcriptional regulatory protein PhoP [Photobacterium profundum SS9] Length = 229 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L+H ++ L V E+G+ + Y D ++D+GL D G Sbjct: 6 MRILIVEDDQILSHHLKSQLSELGHQVQCAGTAEEGLFFAQNYPNDIAVVDIGLPDRDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R + PV IL+ ++ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS Sbjct: 66 SLIKDMRKKGLRLPVLILTARANWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GD+ V+L AK V V + LT EY ++E L ++K+ L+ LY+ Sbjct: 126 GFVKPEMSAGDIRVDLLAKQVFVGETLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E + I+V I +LRKK +AG N I T+ G+GY+ A+ Sbjct: 186 DQ-EGDPNTIEVMISRLRKKFM-SAGQDNPISTIRGQGYIFELQAQ 229 >gi|170748483|ref|YP_001754743.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655005|gb|ACB24060.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 221 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD ALA + +L++ENF + GED L + +DA++LDLGL G Sbjct: 1 MKILLVEDDAALAAEVAKVLRAENFVLDHAATGEDAQHLGETEGYDAVVLDLGLPKGDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRA R A + PV +L+ DKV ++GADDY+ KP EELV R+RA+VRRS+ Sbjct: 61 SVLRAWRAAGRTLPVLVLTARDGWSDKVAAFKAGADDYLVKPVRVEELVIRLRALVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S I G LS + E +G + LTG E++++ L L + T + + + +Y+ Sbjct: 121 GGGASRITCGPLSFDPGLGAFEHEGLPLKLTGLEWRVLSCLMLNRETVVPRPHLIERVYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G + + ++V I +LR+K++ A IE+V G GY L Sbjct: 181 GDADVDSNSVEVIITRLRRKIAPA-----RIESVRGHGYRL 216 >gi|227889541|ref|ZP_04007346.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|227850019|gb|EEJ60105.1| response regulator [Lactobacillus johnsonii ATCC 33200] Length = 242 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL L+ E + V G G++L +FDAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 63 IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q +I DL++ + V + LT +EY ++ L KN +T+E Sbjct: 122 EKRAMGDTMGVQKVIHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 LN ++ + E +++V++ LR K+ + G +YI+TV G GY++R + DE E Sbjct: 182 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 239 >gi|85708091|ref|ZP_01039157.1| two-component response regulator [Erythrobacter sp. NAP1] gi|85689625|gb|EAQ29628.1| two-component response regulator [Erythrobacter sp. NAP1] Length = 225 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L ++ L+ + V ++ GEDG L ++DA ILDLGL +I G Sbjct: 1 MRILIVEDEPTLGQQLKSTLEQTGYAVDLSTDGEDGHFLGSTEDYDACILDLGLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV +L+ S DKV GL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 SVLGMWRKEGRDFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S + G + ++ + V + G + LT +EY+++ L K +++ + H+YD Sbjct: 121 GNTSSELTAGGVRLDTRSGRVTLDGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL G I T+ G GY L + A Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GAEVITTIRGLGYSLDDPA 220 >gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435] gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 219 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 131/220 (59%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA +EL L +N++V + G+ G++ +D IILDL L +I G E+ Sbjct: 4 ILIVEDEQNLARFLELELTHDNYSVDIEYEGQAGLDKALSNNYDLIILDLMLPNINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + STP+ I++ S DKV GL GADDYI KPF EEL ARIRA++RR Sbjct: 64 CRRVRQEQ-STPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRRQ--P 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + +I + +++DA V + G ++ T EY ++ LL+ +N L +E L+H++ Sbjct: 121 QKDIIDINGIKIDVDAFNVTINGEQLDFTKTEYDLLYLLATNRNRVLQREQILDHVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL G IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLK-PYGKDKTIETVRGVGYVIR 219 >gi|169829942|ref|YP_001700100.1| transcriptional regulatory protein cutR [Lysinibacillus sphaericus C3-41] gi|168994430|gb|ACA41970.1| Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Lysinibacillus sphaericus C3-41] Length = 230 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 132/226 (58%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L+ I LK + V G++ +EL + E+D IILDL L + G Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +RV + ILS S+I DK+ GL GA+DY+ KPF+ +EL ARIR ++RRS Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I +++++ K V V G IH+T KEY ++E L L +N ++ E + H++D Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I LRKK+++ G I+T+ G+GY++ EN + Sbjct: 181 SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITENDR 226 >gi|167032955|ref|YP_001668186.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166859443|gb|ABY97850.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 222 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA + L+ + + V G D + + +D IILDLGL +PG Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R A ++TPV IL+ S +++ GL++GADDY+SKPF+ EEL RI+A++RR+R Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + L ++ + V G I LT E++++ L L+K HLY Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG E + +++V + LR+KL G++ IET G+GY+ Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYI 216 >gi|104781058|ref|YP_607556.1| DNA-binding response regulator [Pseudomonas entomophila L48] gi|95110045|emb|CAK14750.1| putative DNA-binding response regulator [Pseudomonas entomophila L48] Length = 222 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA + L+ + + V G D + + +D I+LDLGL +PG Sbjct: 1 MRLLLVEDNVPLADELTATLQRQGYAVDWLADGRDAVYQGQSEPYDLIVLDLGLPGLPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R A ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RR++ Sbjct: 61 EVLAQWRAANLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRAK 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + L ++ + V +G I LT E++++ L L+K HLY Sbjct: 121 GLANQPRLEAAGLHLDESRQCVSREGVDIQLTAAEFRLLRYFMLHPGQVLSKSHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG E + +++V + LR+KL G++ IET G+GYV Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYV 216 >gi|300361211|ref|ZP_07057388.1| response regulator [Lactobacillus gasseri JV-V03] gi|300353830|gb|EFJ69701.1| response regulator [Lactobacillus gasseri JV-V03] Length = 246 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL L+ E + V G G++L +FDAI+LDL L D+ G E Sbjct: 7 KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 67 IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 125 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q ++ DL++ + V + LT +EY ++ L KN +T+E Sbjct: 126 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIKNKNNVVTRE 185 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 LN ++ + E +++V++ LR K+ + G +YI+TV G GY++R + DE E Sbjct: 186 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 243 >gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 220 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL I L E + V G + FD +LDLGL + G Sbjct: 1 MRLLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + + PV IL+ + ED++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 QVLRRLRDSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+LI +S+N + V QG + LT KEYQ++ L +T++ + LY Sbjct: 121 GRAQALIEHAGISLNPGTQQVSYQGKPVALTPKEYQLLHELLSPPGRVMTRDHLMQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E E ++V I LRKK S + I T+ G GY++ E Sbjct: 181 WSEEAESNTLEVHIHHLRKKFST-----DLIRTIRGVGYLVEE 218 >gi|330504167|ref|YP_004381036.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918453|gb|AEB59284.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 225 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + + D ++DLGL + G Sbjct: 1 MKLLVVEDEALLRHHLFARLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGLPGMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR S P+ IL+ + +DKV GL GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRSQDKSFPILILTARGNWQDKVEGLSCGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +S I G L ++L K V + LT EY+++E L L + KE + LY Sbjct: 121 GFTKSTIEAGSLVLDLHRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVAKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G D+ + +I+V + +LR+KL GGK+ IETV G+GY+ E K Sbjct: 181 GDDDRDPNVIEVLVGRLRRKLEAVLGGKS-IETVRGQGYMFNERCK 225 >gi|296116750|ref|ZP_06835357.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976672|gb|EFG83443.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] Length = 233 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 136/220 (61%), Gaps = 1/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD +A + L+S F V G G+E+ ++FD +I+D L ++ G + Sbjct: 12 VLLVEDDVKIAQEVVEELESRRFRVRHEVSGSLGLEVGLAHDFDVMIVDRMLPELDGLSL 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR ++ PV +LS +S+++D+V GL++G DDY++KPF EEL AR+ A++RR Sbjct: 72 IETLRERRVRAPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARLEALLRRPNNS 131 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++++ G L+++L +TV G I L +E++++E L R + LT+ M L +++ R Sbjct: 132 RETMLHAGPLAMDLIERTVTRNGELIELLPREFRLLEYLMRRPDQVLTRNMLLEDVWNYR 191 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P+ ++DV I KLR+K+ + G + I+++ G G++LR Sbjct: 192 FIPQTNLVDVHIGKLRRKV-DEPGAPSLIQSIRGAGFMLR 230 >gi|238018371|ref|ZP_04598797.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748] gi|237864842|gb|EEP66132.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748] Length = 224 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ L L++EN V G+ I+ +D I++D+ + + G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPVLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R +TPV +L+ S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HAQ+ I G L++N+ +TV+ G I LT KE+ ++ L+ +N L+++ L+H+++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +IDV+I LRKK+ K I+TV G GYVL+ Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTDENVK-LIQTVRGVGYVLK 221 >gi|294792553|ref|ZP_06757700.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27] gi|294794344|ref|ZP_06759480.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44] gi|313894218|ref|ZP_07827783.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412] gi|294454674|gb|EFG23047.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44] gi|294456452|gb|EFG24815.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27] gi|313441042|gb|EFR59469.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412] Length = 224 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ L L++EN V G+ I+ +D I++D+ + + G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R +TPV +L+ S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HAQ+ I G L++N+ +TV+ G I LT KE+ ++ L+ +N L+++ L+H+++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +IDV+I LRKK+ K I+TV G GYVL+ Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTDENVK-LIQTVRGVGYVLK 221 >gi|283853868|ref|ZP_06371084.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283570743|gb|EFC18787.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 251 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 134/224 (59%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A I L+ F V G DG+ L + ++D+ L + G Sbjct: 29 MRILLVEDDEKIASFIIGGLRQSGFAVDHAADGLDGLHLATTEPYAVAVIDVMLPGMDGL 88 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ LR K++TP+ ILS S+ED+VRGL++G+DDYISKPF+ EL+AR++A++RRS Sbjct: 89 KVIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRST 148 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + + G+LS+NL + V + L +E+ ++E L+K M + H++ Sbjct: 149 SASEPTRLSVGELSMNLLTRDVHRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 208 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ ++DV +C+LR K+ + + T+ G GYVL+E Sbjct: 209 DYHFDPQTNLVDVLVCRLRNKIDRDY-DRKMLHTLRGVGYVLKE 251 >gi|257465004|ref|ZP_05629375.1| transcriptional regulatory protein [Actinobacillus minor 202] gi|257450664|gb|EEV24707.1| transcriptional regulatory protein [Actinobacillus minor 202] Length = 221 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 132/222 (59%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDDK + I+L L +NF V + TD G+ G + E+DA+ILDL L + G Sbjct: 1 MRILLIEDDKLIGEGIKLGLTKQNFAVDWFTD-GKLGFDALFSAEYDAVILDLSLPRMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++L+ R PV IL+ ++++++ G +GADDY+ KPF E+V R++A++RRS Sbjct: 60 LDILKQWRKENNHIPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S IV GDL ++ + V + G I LT KE++++EL + K+ L + + LY Sbjct: 120 HQQVSSEIVIGDLVIDSHTRRVTLNGEDISLTAKEFRLLELFAHHKDRVLPRSLIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL GK++++TV G GY L Sbjct: 180 SWDNEVSSNALEVYIHNLRKKL-----GKSWVKTVHGVGYKL 216 >gi|116630026|ref|YP_815198.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|116095608|gb|ABJ60760.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] Length = 246 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL L+ E + V G G++L +FDAI+LDL L D+ G E Sbjct: 7 KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 67 IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 125 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q ++ DL++ + V + LT +EY ++ L KN +T+E Sbjct: 126 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 185 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 LN ++ + E +++V++ LR K+ + G +YI+TV G GY++R + DE E Sbjct: 186 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 243 >gi|225848555|ref|YP_002728718.1| transcriptional activator protein IrlR [Sulfurihydrogenibium azorense Az-Fu1] gi|225644100|gb|ACN99150.1| transcriptional activator protein IrlR [Sulfurihydrogenibium azorense Az-Fu1] Length = 222 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 135/223 (60%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+K L I+ L+ E+F V + G++ ++ +DAIILDL L DI G Sbjct: 1 MKVLIIEDEKKLGKLIKKGLEEESFIVDLVHTGKEALDFLTTQSYDAIILDLMLPDISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + I TPV +L+ ++DK+ L +GADDYI+KPF+ +EL+ARIRA+VRR + Sbjct: 61 DVLIKIRNSSIKTPVIVLTAKDEVKDKIELLDAGADDYITKPFDFDELLARIRAVVRRDK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S+I GDL ++L TV+ G+ I L+ KEY ++ + LTK+ +N +YD Sbjct: 121 DIKSSVISIGDLEIDLSKSTVKKSGNLIKLSSKEYLLLRYFIFNRGKILTKDNLINAVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++V I +LR K+ + YI+++ G GY+ E Sbjct: 181 LSFELNSNALEVLISRLRSKIEDE--NHKYIKSIRGLGYIFDE 221 >gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] Length = 224 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 136/225 (60%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+K +A +EL L+ E + V G +G+ L FD ++LD+ L I G E Sbjct: 4 KILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSENFDVLLLDVMLPSINGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R P+ +L+ ++ D+V GL +GADDYI KPF EEL+ARIR I+RR Sbjct: 64 ICRRIRTQS-QVPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRVTP 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++SL + D+ +++ A V VQG+++ LT EY +++LL KN T+E L + Sbjct: 123 EQTNSESLCLR-DIEIDVAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + E ++DV+I LR KL A +YIETV G GYV+RE Sbjct: 182 WGYDTDIETNVVDVYIRHLRTKLPGAMN--DYIETVRGVGYVMRE 224 >gi|329767893|ref|ZP_08259407.1| hypothetical protein HMPREF0428_01104 [Gemella haemolysans M341] gi|328838681|gb|EGF88280.1| hypothetical protein HMPREF0428_01104 [Gemella haemolysans M341] Length = 225 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LA ++E MLK N++V V + G+D ++ ++D ILD+ + + G Sbjct: 1 MRLLLAEDERDLADALEAMLKHNNYSVDVVNNGQDALDYLMLDDYDGAILDVMMPQMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR K STPV +L+ S IEDKV GL SGADDY++KPF +EL+AR+R++ RR Sbjct: 61 TVVKKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVTKELLARVRSMTRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G++S++ + + ++ L+ KEYQM+E+L + E FL ++ Sbjct: 121 TFTSNVLELGNVSLSKYTFELATEKDKVRLSNKEYQMMEMLMRNPGNVIQTEQFLERIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E+ ++ V I LRKKL A +I+ GY L Sbjct: 181 YDSESEINVVWVNISYLRKKLK-ALDANIHIKATRNVGYTL 220 >gi|119944067|ref|YP_941747.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] gi|119862671|gb|ABM02148.1| two component transcriptional regulator, winged helix family [Psychromonas ingrahamii 37] Length = 230 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +L +++ L + ++ V GE+G+ Y +DA I+DLGL I G Sbjct: 1 MRILLVEDDISLQSNLKQHLIASHYRVDAASDGEEGLFQGIEYNYDAAIIDLGLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR + P+ IL+ S +DKV GL +GADDY+ KPF EELVAR+ A++RRS Sbjct: 61 TVITRLREKNRNFPILILTARDSWQDKVEGLDAGADDYLCKPFYPEELVARLNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G S+N + V+ + I L+ EY++ E L +K + H+YD Sbjct: 121 GKASPVINNGPFSINTSSLEVKKEHEFISLSASEYKIFEYFMLHPGEVKSKTVLTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+VFI +LRKKL + IET+ G+GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNEYGLIETLRGQGYRL 220 >gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 223 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 134/222 (60%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K +A +EL LK E F V G G+EL + +FD I+LD+ L + G E Sbjct: 4 KILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESEQFDCILLDVMLPQLNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +++ + D+V GL +GADDY+ KPF EEL+ARIR+I+RR + Sbjct: 64 VCRRIRKTS-NVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSILRRVQP 122 Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S ++ +L +++DA V + ++I LT KE+ +++LL +N T+E L ++ Sbjct: 123 AQKSKQLILRELEIDVDAYEVIFENNKIELTRKEFDLLKLLVENRNLVCTRERILEEVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL YIETV G GYV+R Sbjct: 183 FDTEVETNVVDVYIRHLRTKLQTEHTP--YIETVRGVGYVMR 222 >gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] Length = 219 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 134/220 (60%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA IEL LK E++NV + G G++ +D IILDL L +I G E+ Sbjct: 4 ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPNINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + STP+ I++ DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 64 CRQIRQEQ-STPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ--P 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 +++I + ++ DA V V G ++ LT EY ++ +L+ +N + +E L+H++ Sbjct: 121 QKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGFN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL K+ IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219 >gi|238853787|ref|ZP_04644153.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri 202-4] gi|282851358|ref|ZP_06260723.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311110344|ref|ZP_07711741.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22] gi|238833596|gb|EEQ25867.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri 202-4] gi|282557326|gb|EFB62923.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311065498|gb|EFQ45838.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22] Length = 242 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL L+ E + V G G++L +FDAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 63 IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q ++ DL++ + V + LT +EY ++ L KN +T+E Sbjct: 122 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 LN ++ + E +++V++ LR K+ + G +YI+TV G GY++R + DE E Sbjct: 182 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 239 >gi|91976474|ref|YP_569133.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91682930|gb|ABE39232.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 224 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 129/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G ++++ V V+GH + LT EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGPVALDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I+VF+ ++RKKL + I+TV G GY+L D Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLLTPPPAD 222 >gi|42519507|ref|NP_965437.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|41583795|gb|AAS09403.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|329667746|gb|AEB93694.1| two-component regulatory system response regulator [Lactobacillus johnsonii DPC 6026] Length = 242 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL L+ E + V G G++L +FDAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 63 IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q ++ DL++ + V + LT +EY ++ L KN +T+E Sbjct: 122 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 LN ++ + E +++V++ LR K+ + G +YI+TV G GY++R + DE E Sbjct: 182 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 239 >gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 223 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 127/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILIVEDDINLNRQLADALKEAGYVVDTAFDGEEGHFLGDTEPYDAIILDIGLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A TPV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGTPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S I+ G + ++ + V G + LT EY+++ L K +++ + H+YD Sbjct: 121 GHSSSEIICGPVRLDTKSSKASVDGKPLKLTSHEYRLLAYLMHHKGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LRKK+ G + IETV G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214 >gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 228 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K LA +EL LK E + V G G+E +FD I+LDL L ++ G E Sbjct: 3 RILIIEDEKNLARFVELELKHEGYETNVQFNGRTGLEAALSQDFDVILLDLMLPELNGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K STP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 VARRVREVK-STPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRIHL 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ + DL++ + + V I+LT +EY+++ L N L +++ L Sbjct: 122 EGEQKSTKQTTVKFKDLTIEKENRIVRRGDEVINLTKREYELLLALMENINVVLARDVLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV++ LR K+ + G K+YI+TV G GYV+R Sbjct: 182 TKVWGYESEVETNVVDVYVRYLRNKI-DVPGQKSYIQTVRGTGYVMR 227 >gi|114563656|ref|YP_751169.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114334949|gb|ABI72331.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 224 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 130/219 (59%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L+H +++ L ++ V V ++G Y DA I+DLGL D G Sbjct: 1 MRILVIEDDPLLSHHLQVQLSAQGNQVQVALTAKEGFYQATNYPIDAAIIDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A + P+ IL+ + +DKV GL +GADDY+ KPF KEEL+AR+ AIVRRS Sbjct: 61 SLIKMLRNADVKAPILILTARLTWQDKVEGLNAGADDYLVKPFQKEELIARLDAIVRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I +G L +++ AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 121 GFVRPTITSGALQIDVAAKQVTLNQTPLEITAFEYLILEYLMRHCHEVVAKQRLLDVVYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + I+V + +LRKKL+ G + I T+ G+GY Sbjct: 181 DK-EGDPNTIEVMVSRLRKKLAQ-GGIEQSIITLRGQGY 217 >gi|254501704|ref|ZP_05113855.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222437775|gb|EEE44454.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 222 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 132/228 (57%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L + L+ + V GE+G L +DA++LDLGL + G Sbjct: 1 MRLLIVEDDKDLNRQLVTALEEAGYVVDSAFDGEEGHFLGDTEPYDAVVLDLGLPTLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ Sbjct: 61 SVLEKWRRDGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G++ ++L A V V G I LT EY+++ L + +++ HLYD Sbjct: 121 GHASNELTCGNVRLDLRAGRVTVDGSPIKLTSHEYRLLSYLLHHQGKVISRTELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + ++VF+ +LRKK+ G IET+ G GY L E A+DE Sbjct: 181 QDFDRDSNTVEVFVGRLRKKI-----GAEMIETIRGLGYRLGE-ARDE 222 >gi|39934984|ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas palustris CGA009] gi|192290518|ref|YP_001991123.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39648835|emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family [Rhodopseudomonas palustris CGA009] gi|192284267|gb|ACF00648.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 224 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 129/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G + ++ V V G+ + LT EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGPVVLDTRTGRVSVSGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I+VF+ ++RKKL G + I+TV G GY+L A D Sbjct: 181 QDFDRDSNTIEVFVGRIRKKL-----GVDIIQTVRGLGYLLSPPAAD 222 >gi|83643472|ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631515|gb|ABC27482.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 226 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 137/232 (59%), Gaps = 13/232 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDDK +A + LK + V TD G+ G+ + +D +++D L ++ G Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR TPV +LS + ++D+V+GL++G DDY+ KPF+ EL+ARI A++RRS+ Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q ++ T DL ++L A+TV+ G I L +E++++E LT+ M L Sbjct: 121 -QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEK 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENA 225 ++D +P+ +IDV I +LR K+ K++ + T+ G GYVLRE A Sbjct: 180 VWDYHFDPQTNVIDVHISRLRAKID-----KDFETPLLHTIRGAGYVLREAA 226 >gi|146307998|ref|YP_001188463.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145576199|gb|ABP85731.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 225 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + + D ++DLGL + G Sbjct: 1 MKLLVVEDEALLRHHLFTRLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGLPGMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRSQDKNFPILILTARGNWQDKVEGLSCGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +S I G L ++L+ K V + LT EY+++E L L + KE + LY Sbjct: 121 GFTKSTIEAGSLVLDLNRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G DE + +I+V + +LR+KL GGK IETV G+GY+ E K Sbjct: 181 GDDERDPNVIEVLVGRLRRKLEAMLGGK-LIETVRGQGYMFNERCK 225 >gi|170751369|ref|YP_001757629.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657891|gb|ACB26946.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 225 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK + + L+ + GE+G L + +DAIILD+GL G Sbjct: 1 MRLLVVEDDKDINRQVVAALEEAGYVADKAYDGEEGGYLGESEPYDAIILDMGLPKADGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RA++RR+ Sbjct: 61 TVLQKWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G ++ LT EY+++ L +++ HLYD Sbjct: 121 GHATSQIACGPVTLDTRSGKVFVDGAQVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKKL+ + I+TV G GY++ N Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLVDPN 219 >gi|170727148|ref|YP_001761174.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169812495|gb|ACA87079.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 224 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 131/219 (59%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 1 MRILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++LR + PV IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 SLIQSLRDNGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I +G L+++L AK V + + +T EYQ++E L + + K+ L+ +Y Sbjct: 121 GFVKPVITSGPLNLDLAAKQVTMHEEVMEVTAFEYQILEYLMRHCHEVVAKQRLLDVVYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + I+V + +LRKKL+ + G N I T+ G+GY Sbjct: 181 DK-EGDPNTIEVMVSRLRKKLT-SGGLDNPIATIRGQGY 217 >gi|77920671|ref|YP_358486.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546754|gb|ABA90316.1| two component transcriptional regulator, winged helix family [Pelobacter carbinolicus DSM 2380] Length = 223 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K +A I+ L+ E+F V V GE+G+ L + +D I++DL L G Sbjct: 1 MRVLVVEDEKKVASFIKRGLEEEDFTVDVAFDGEEGLYLAENNPYDIILMDLMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR ++TPV L+ ++ED V GL SG+DDY++KPF EL+AR++A++RRS Sbjct: 61 EVIKELRTKDVTTPVLCLTAKDAVEDIVSGLDSGSDDYLTKPFAFSELLARVKALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ + V I LT KEY ++E N LT+ M H++D Sbjct: 121 KDRGAEIYFADLRLDPVSHKVWRSDQEIDLTAKEYALLEYFMRNPNQVLTRAMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IIDV++ LRKK+ + K I TV G GYVL+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKV-DRDFDKKLIHTVRGVGYVLKE 222 >gi|311693076|gb|ADP95949.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 221 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ LA + L+ F+V T ++ L + ++ A+ILDLGL D G Sbjct: 1 MRLLLVEDDRLLADGLSGQLEKAGFSVDTTYTAKEAAILGEQEDYRAVILDLGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR R +I PV IL+ DKV GL++GADDY++KPF EEL+AR+ AIVRRS Sbjct: 61 DVLRKWRTHQIGCPVLILTARGDWHDKVEGLKAGADDYLAKPFQTEELIARLNAIVRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S++ G ++ + ++++ + H LTG E++++ L R +KE + LY Sbjct: 121 GRIHSMVKAGRFELDENRQSLKSEDGTEHSLTGTEFRLLRCLMSRPGHVFSKEQLMEQLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + D P +I+ +I +LRK + N + I T G+GY+ + Sbjct: 181 NLNDTPNENVIEAYIRRLRKLVGN-----DTIATRRGQGYLFND 219 >gi|168702458|ref|ZP_02734735.1| two component transcriptional regulator, winged helix family protein [Gemmata obscuriglobus UQM 2246] Length = 230 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED + LA ++ ++ E F V V GE+ C+ +D ++LD+ L + G + Sbjct: 1 MLLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSL 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP-FNKEELVARIRAIVRRSRG 121 L+ R + ++T V +L+ S DKV GL +GADDY+SK + EEL ARIRA++RR Sbjct: 61 LKRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQ 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ DL ++ A+TV G IHLT +EY ++E L+ + +T+ M HLYD Sbjct: 121 QKDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDE 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DE ++DV+I LR K+ + I T WG GY+LR Sbjct: 181 YDENTSNVVDVYIRYLRNKV-DKEFDPQLILTRWGEGYMLR 220 >gi|190894846|ref|YP_001985139.1| putative two-component response regulator protein [Rhizobium etli CIAT 652] gi|190700507|gb|ACE94589.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] gi|327189023|gb|EGE56209.1| putative two-component response regulator protein [Rhizobium etli CNPAF512] Length = 222 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 131/222 (59%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA + L+ + + + GED + K E+ A+ILDL L + G Sbjct: 1 MRLLVVEDNKDLAAWLGKALRQAQYAIDIAHDGEDAEHMLKVAEYSAMILDLALPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV IL+ +S++ +V GL SGADDY++KPF EL ARIRA+VRR + Sbjct: 61 TLLKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S I GDL + + V G + LT +EY ++E L ++ TT++K ++ Sbjct: 121 DRASSEITVGDLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKLGTTVSKTALSESVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DE + I+++I +LRKKL N++ I T+ G GY+LR Sbjct: 181 FDDEADPSAIEIYIHRLRKKLENSS---VQIATLRGLGYLLR 219 >gi|22124591|ref|NP_668014.1| DNA-binding transcriptional regulator BasR [Yersinia pestis KIM 10] gi|45440430|ref|NP_991969.1| DNA-binding transcriptional regulator BasR [Yersinia pestis biovar Microtus str. 91001] gi|51594821|ref|YP_069012.1| DNA-binding transcriptional regulator BasR [Yersinia pseudotuberculosis IP 32953] gi|108806055|ref|YP_649971.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Antiqua] gi|108813411|ref|YP_649178.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Nepal516] gi|145600803|ref|YP_001164879.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Pestoides F] gi|153948791|ref|YP_001402561.1| BasR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|153997284|ref|ZP_02022384.1| two-component system response regulator [Yersinia pestis CA88-4125] gi|162418181|ref|YP_001608275.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Angola] gi|165928165|ref|ZP_02223997.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Orientalis str. F1991016] gi|165937403|ref|ZP_02225966.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Orientalis str. IP275] gi|166011292|ref|ZP_02232190.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Antiqua str. E1979001] gi|166214025|ref|ZP_02240060.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401228|ref|ZP_02306728.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420653|ref|ZP_02312406.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423155|ref|ZP_02314908.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470191|ref|ZP_02334895.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis FV-1] gi|170025956|ref|YP_001722461.1| DNA-binding transcriptional regulator BasR [Yersinia pseudotuberculosis YPIII] gi|186893830|ref|YP_001870942.1| DNA-binding transcriptional regulator BasR [Yersinia pseudotuberculosis PB1/+] gi|218930521|ref|YP_002348396.1| DNA-binding transcriptional regulator BasR [Yersinia pestis CO92] gi|229839160|ref|ZP_04459319.1| two-component system response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896649|ref|ZP_04511816.1| two-component system response regulator [Yersinia pestis Pestoides A] gi|229899724|ref|ZP_04514865.1| two-component system response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229903886|ref|ZP_04518999.1| two-component system response regulator [Yersinia pestis Nepal516] gi|270489125|ref|ZP_06206199.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294505362|ref|YP_003569424.1| two-component system response regulator [Yersinia pestis Z176003] gi|21957394|gb|AAM84265.1|AE013670_2 transcriptional regulatory protein, member of 2-component regulatory system [Yersinia pestis KIM 10] gi|30314186|gb|AAP12460.1| BasR/PmrA-like two-component system response regulator [Yersinia pseudotuberculosis (type O:1b)] gi|45435287|gb|AAS60846.1| two-component system response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51588103|emb|CAH19709.1| two-component system response regulator [Yersinia pseudotuberculosis IP 32953] gi|108777059|gb|ABG19578.1| two-component system response regulator [Yersinia pestis Nepal516] gi|108777968|gb|ABG12026.1| two-component system response regulator [Yersinia pestis Antiqua] gi|115349132|emb|CAL22095.1| two-component system response regulator [Yersinia pestis CO92] gi|145212499|gb|ABP41906.1| two-component system response regulator [Yersinia pestis Pestoides F] gi|149288921|gb|EDM39001.1| two-component system response regulator [Yersinia pestis CA88-4125] gi|152960286|gb|ABS47747.1| transcriptional regulatory protein BasR/PmrA [Yersinia pseudotuberculosis IP 31758] gi|162350996|gb|ABX84944.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis Angola] gi|165914508|gb|EDR33122.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Orientalis str. IP275] gi|165919852|gb|EDR37153.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Orientalis str. F1991016] gi|165989676|gb|EDR41977.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Antiqua str. E1979001] gi|166204820|gb|EDR49300.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961459|gb|EDR57480.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049253|gb|EDR60661.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057325|gb|EDR67071.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752490|gb|ACA70008.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186696856|gb|ACC87485.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229679656|gb|EEO75759.1| two-component system response regulator [Yersinia pestis Nepal516] gi|229687216|gb|EEO79291.1| two-component system response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229695526|gb|EEO85573.1| two-component system response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700427|gb|EEO88459.1| two-component system response regulator [Yersinia pestis Pestoides A] gi|262363427|gb|ACY60148.1| two-component system response regulator [Yersinia pestis D106004] gi|262367198|gb|ACY63755.1| two-component system response regulator [Yersinia pestis D182038] gi|270337629|gb|EFA48406.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294355821|gb|ADE66162.1| two-component system response regulator [Yersinia pestis Z176003] gi|320013711|gb|ADV97282.1| two-component system response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 220 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ L I + L SE + + L + ++ IILDLGL D G Sbjct: 1 MKLLIVEDDELLQRGIAMALTSEGYVCDCAATAAEAHSLLQTSQYSMIILDLGLPDQDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R ++ PV IL+ ++ED+V GL +GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 LLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELLARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L+ DLS+NL + V +QG + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQGQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LR+KL GK+ I TV G GY L Sbjct: 181 WNDDLSSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRL 216 >gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] Length = 200 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 125/200 (62%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED+ L + + LK ++V GE+ ++ ++ E+D +ILD+ + + GF Sbjct: 1 MKILLAEDEVDLNNVVTRYLKKNGYSVDSVLDGEEALDYLEYSEYDLVILDIMMPKVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR T V +L+ S +DKV+GL GADDYI KPF+ EL+ARIRA+VRR Sbjct: 61 EVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELLARIRAVVRRKY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G++ + +V GDL ++ K+V G +I LTGKEY+++E L KN L+++ H++D Sbjct: 121 GNSSNKLVIGDLILDTSEKSVTRAGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKK 200 E + IIDV I +RKK Sbjct: 181 FDYEGDSNIIDVLIKNIRKK 200 >gi|78224573|ref|YP_386320.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78195828|gb|ABB33595.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 224 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 129/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K ++ I+ L+ E + V GEDG+++ FD IILD+ L G Sbjct: 1 MKILVVEDEKKVSSFIKRGLEEERYEVEAAFNGEDGLKMALEKGFDLIILDVMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR K +TPV +L+ S+ED V GL SG+DDY++KPF EL+AR+RA+VRRS Sbjct: 61 SVVRELRERKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V + I LT KEY ++E N LT+ M H++D Sbjct: 121 QDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IIDV++ LRKK+ A K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDREA-DKKLIHTVRGVGYILKE 222 >gi|325276878|ref|ZP_08142571.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097983|gb|EGB96136.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 222 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA + L+ + + V G D + + +D IILDLGL +PG Sbjct: 1 MRLLLVEDNVPLADELIAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R A ++TPV IL+ S +++ GL++GADDY+SKPF+ EEL RI+A++RR+R Sbjct: 61 EVLAQWRAAALATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + L ++ + V G I LT E++++ L L+K HLY Sbjct: 121 GLANQPRLEAAGLHLDEGRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DG E + +++V + LR+KL G++ IET G+GY+ +A+ Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYIYAGSAE 222 >gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 133/225 (59%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIEDD +A IEL L+ E + V D G DGI + K FD ++LD+ L + G E Sbjct: 4 KILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINILKEKSFDLLLLDIMLPGLNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ +L+ S +EDKV+GL GADDY++KPF EEL+ARIRA +RR G Sbjct: 64 VCSQIREFS-DIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLRRDEG 122 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++++ T D+ V LDA V+ G I LT KEY ++ L + ++++ LN+++ Sbjct: 123 NLENENILKTADVEVKLDAHIVKRAGEEIELTKKEYDLLVYLIRNEGIVVSRDKLLNNVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I+DV+I LR K+ + K I TV G GYVLR + Sbjct: 183 GYDYTGETNIVDVYIRYLRSKIDDPFSQK-IIHTVRGVGYVLRSD 226 >gi|73539148|ref|YP_299515.1| two component transcriptional regulator [Ralstonia eutropha JMP134] gi|72122485|gb|AAZ64671.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 235 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 124/231 (53%), Gaps = 15/231 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----------FDAIIL 50 MR+LL+EDD + S++L L+ E F V GE G+ +D I+L Sbjct: 1 MRVLLVEDDAMIGDSVKLALRQEGFAVDWVQDGEAGLAAGTPTGGSGGADEGACYDLILL 60 Query: 51 DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110 DLGL G +VLRALR +STPV IL+ +I D+V GL +GADDY+ KPF+ +EL A Sbjct: 61 DLGLPRRSGLDVLRALRARGVSTPVLILTARDAIADRVAGLNAGADDYLVKPFDLQELAA 120 Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R+ A+ RR+ G A+ ++ G +S+N + V + G +HL+ +E+ ++ L R + Sbjct: 121 RMHALARRAEGRAEPILSYGAISLNPATREVTLNGEPVHLSAREFSLLSALMARPGKVWS 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY DE ++V+I LRKK G I + G GYV+ Sbjct: 181 VAQLQERLYSWDDEVGSNTVEVYIHALRKKF-----GAALIRNIRGVGYVM 226 >gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 135/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V+V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVFVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|146313251|ref|YP_001178325.1| DNA-binding transcriptional regulator BasR [Enterobacter sp. 638] gi|145320127|gb|ABP62274.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 220 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L L +E + + + L + E+ +ILDLGL D G Sbjct: 1 MKLLIVEDDLLLQEGLALGLANEGYALDCAATAAEADSLIQSGEYSLVILDLGLPDKDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + PV IL+ +IED++ GL SGADDY+ KPF EL AR RA++RR + Sbjct: 61 TLLSQWRRRGVDNPVLILTARDAIEDRIHGLDSGADDYLVKPFALAELQARARALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ + +V GDL++NL + V H + +T KE+ ++ L +R T+ +E +Y Sbjct: 121 GHSDNQVVDGDLTLNLQTQQVLCDSHPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D+P ++V I LR+KL GK+ I+TV G GY L Sbjct: 181 WQDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRL 216 >gi|188996301|ref|YP_001930552.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931368|gb|ACD65998.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 220 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 135/222 (60%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDDK L I+ L+ E F V + G E ++ I+LDL L + G Sbjct: 1 MRLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENYEVIVLDLMLPEKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +LR I TPV IL+ S+EDK++GL +GADDY++KPF+ +ELVARI+A++RR Sbjct: 61 SILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ ++ GD+ V+L + V+V+G + LT E +++ +L+L+ N L+K LY Sbjct: 121 NVSKGMVSFGDVEVDLVNQNVKVKGKDVELTAMELKLLMMLALKSNRILSKTYIEQSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P+ +I+V I +LRKKL YI+TV G GY+L+ Sbjct: 181 WEGSPDSNVIEVLISRLRKKLDPKG---KYIKTVKGLGYILK 219 >gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 220 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPYDLVLLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V ++G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G + I V G GY++ + A Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GADLIRNVRGLGYMIAKEA 220 >gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 126/223 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + H + L E++ V GE+ + E+D ++LD+ L + G Sbjct: 1 MQILIVEDEAKIRHFLRQGLLEESYAVDTAVDGEEALYKLDINEYDLVLLDIMLPKVNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +ALR S P+ +L+ + DKV GL +GADDY++KPF+ +EL ARIRA+ RR + Sbjct: 61 AVCKALREKSSSPPILLLTAKDGVADKVLGLDAGADDYLTKPFSFDELTARIRALFRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ GDLS++ KTV+ I LT +EY ++E N LTK L H++D Sbjct: 121 KADATLLTIGDLSLDPATKTVKRGEQSIVLTTREYALLEYFLRNPNILLTKTQILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E I++ ++ LRKK+ A I T+ G GY+LRE Sbjct: 181 YNFEGLSNIVETYVKYLRKKIKTAPNAPELIHTMRGSGYILRE 223 >gi|53804200|ref|YP_114203.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] gi|53757961|gb|AAU92252.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] Length = 224 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ LA + L + F++ V G + ++D +ILDLGL DI G Sbjct: 1 MRILLVEDDETLADGLSRSLAEDGFDLTVAATGTYADSALRTQDYDLVILDLGLPDIDGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LRV K PV IL+ ++D++ GL+ GADDY++KPF EL AR+RA++RRS Sbjct: 61 EVLRQLRVRKSPVPVLILTARDGLDDRIGGLELGADDYMTKPFELRELEARVRALIRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G IV G L +N + V V G + L +EY ++E L L+ ++K+ L Sbjct: 121 GGFGHDIVCGPLVLNTFDRQVHVNGEPMLLPSREYGVLEALLLQAGRVVSKDRIALRLAS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DE I+V++ +LR++L + I TV G GY+L A Sbjct: 181 GGDELADNAIEVYVHRLRRRLDDLG---IRIRTVRGLGYLLERPA 222 >gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] Length = 224 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 134/223 (60%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ LA +E+ L+ E + V G G+E ++D ++LD+ L + G E Sbjct: 4 KILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIMLPQLSGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV +L+ S+ DKV GL SGADDYI+KPF EEL+ARIRA +R+ Sbjct: 64 VLRRLR-RESDLPVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRKRAV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H S++ G+L+++++ V V+G + LT KE+ ++ L K LT+E L+ ++ Sbjct: 123 HTGSILTAGELAMDVERHQVSVRGQSVELTKKEFDLLHQLLENKGRVLTREALLDSVWGF 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +DV+I LR K+ A G K I TV G GYV+RE+ Sbjct: 183 DFVGETNSVDVYIRFLRSKIDEAFGIK-LIHTVRGVGYVIRES 224 >gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 225 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 123/225 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD+ +A + L ++ V V GE EL YE+D I+LD+ L I G Sbjct: 1 MKILLVEDDENIALPVVEDLSDRHYIVEVAQDGEMAFELLDVYEYDLILLDIMLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RR Sbjct: 61 SLCRRLRSQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRRGD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+LS+N + V Q + L+ KEY+++E + + L+HL+ Sbjct: 121 SSLPPVLTWGNLSLNPNTCEVFYQEQPLSLSPKEYKLLEFFLRHPHRVFNRTQILDHLWP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 PE + I LR+K+ G + IETV+G GY L+E Sbjct: 181 LEQLPEEATVKAHISSLRQKIKAVGGVPDLIETVYGLGYRLKEQP 225 >gi|170720972|ref|YP_001748660.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169758975|gb|ACA72291.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 222 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA + L+ + + V G D + + +D IILDLGL +PG Sbjct: 1 MRLLLVEDNVPLADELIAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R A ++TPV IL+ S +++ GL++GADDY+SKPF+ EEL RI+A++RR++ Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAK 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + L ++ + V +G I LT E++++ L L+K HLY Sbjct: 121 GLANQPRLEAAGLHLDESRQCVSREGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG E + +++V + LR+KL G++ IET G+GY+ Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYI 216 >gi|182413658|ref|YP_001818724.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177840872|gb|ACB75124.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 216 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 133/221 (60%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L ++ L E + V D G +G+ + +++DAI+LD+ L ++ G+ Sbjct: 1 MRLLVVEDDPDLLANLLKALGEEGYAVDGADTGPEGLFKAESWDYDAIVLDVMLPELDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR K TPV +L+ + +D+VRGL GADDY++KPF+ EL AR+RA++RRS Sbjct: 61 TLLQRLRRTK-RTPVLMLTARDATQDRVRGLDIGADDYLTKPFDLPELCARLRALIRRSC 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + GDL ++ A+TV +G + LT EY +IE L+L + +++ HL+D Sbjct: 120 GEVHPRLALGDLVIDQTARTVTCKGATVPLTATEYALIEFLALHRGQVVSRTTLYEHLFD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV + +R+K+ G++ I T G GY++ Sbjct: 180 EAHDSLSNLLDVHVAHVRRKI-----GRDVIVTRRGHGYLI 215 >gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 127/225 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ + IE L +N+ V V GE + +++D I+LD+ L + G Sbjct: 1 MKILVVEDDENIVIPIEEYLDEQNYIVEVASDGEVARDFLDVFDYDLIVLDVMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR TP+ +L+ +I+D+V+GL +GADDY+ KPF+ EEL ARIRA++RR Sbjct: 61 ALCQQLRANGCKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALLRRGE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL V+ + V Q ++L+ KEY+++E ++ L+HL+ Sbjct: 121 TALPPILTWGDLCVDPNTCEVTYQQQALNLSPKEYRLLEFFLRHPRRMFSRSQLLDHLWA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 PE + I LR+KL A + IETV+G GY L+E+ Sbjct: 181 MDQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRLKESP 225 >gi|302035689|ref|YP_003796011.1| heavy metal response regulator [Candidatus Nitrospira defluvii] gi|300603753|emb|CBK40085.1| Heavy metal response regulator [Candidatus Nitrospira defluvii] Length = 223 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ + I+ L+ E++ V + + G G+++ +D I++DL L +PG Sbjct: 1 MRVLVVEDETKVGSFIKRALEEESYAVDLCEDGAQGLDMALSGSYDLIMIDLMLPSLPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR KI TPV IL+ S ++ +V+GL +GADDY++KPF +EL+AR+RA++RR Sbjct: 61 EVLTRLRKEKIQTPVLILTAQSKVDQRVKGLDAGADDYLTKPFAIDELLARVRALLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL +N + V G RI LT KEY ++E LT+ M +H+++ Sbjct: 121 AESSGTLQIDDLLLNPATREVTRGGQRIDLTVKEYALLEYFMRHAGRVLTRPMISDHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +IDV++ LR K+ K I T+ G GY+L+ Sbjct: 181 QDFDTFTNVIDVYVNYLRNKIDRGRARK-LIHTIRGSGYMLK 221 >gi|262375479|ref|ZP_06068712.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262309733|gb|EEY90863.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 221 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 133/219 (60%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD++ A SI+ L+ + + + + G+ I + +++D I+LD GL + G Sbjct: 1 MRILLAEDDQSQADSIQTWLEMDGYVIDRVERGDHAILAIEQHQYDCILLDRGLPNATGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L++LR + TPV ++ SI+D+V GL GA+DY+ KPF+ EEL AR+RA +R+ + Sbjct: 61 EILKSLRSQQQDTPVIFITAKDSIDDRVEGLDLGANDYLVKPFSLEELSARVRAQLRQKQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DLS++ AKT+ +G ++LT KE+Q++ L + +T+E LY Sbjct: 121 QTPNHILLWQDLSLDTQAKTLTKEGQAVNLTAKEFQILYKLMQQPEHIVTREQLEESLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DE E I+VFI +LRKK+ G I+T+ G GY Sbjct: 181 WGDEIESNAIEVFIYQLRKKI-----GSQMIKTIRGLGY 214 >gi|260914398|ref|ZP_05920867.1| two component response regulator [Pasteurella dagmatis ATCC 43325] gi|260631499|gb|EEX49681.1| two component response regulator [Pasteurella dagmatis ATCC 43325] Length = 223 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G G+E +DA++LDL L + G Sbjct: 1 MRILLIEDDSLIGNGLQIGLTKSGFTVDWFQDGRTGLEAVNSAPYDAVVLDLTLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ R K PV IL+ +++++V GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 61 EILQTWRKEKCDVPVLILTARDTLDERVTGLQRGADDYLCKPFALAEVVARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I + + + + V +Q + LT +EY+++EL L K+ L + + LY Sbjct: 121 GQSNPIIEHSQIRFDPNQRKVFLQNQEVALTTREYKLLELFMLNKDRVLPRAVIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DE ++V I LR+KL GK++I TV G GY L +N Sbjct: 181 WDDEVSSNALEVHIYNLRQKL-----GKHFIRTVHGVGYTLGKN 219 >gi|90425783|ref|YP_534153.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107797|gb|ABD89834.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 221 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD LA I L+ + V + GEDG + +DA ILDLGL + G Sbjct: 1 MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R AK + PV IL+ +S +KV GL+ GADDY++KPF EEL+ARI A++RR+ Sbjct: 61 SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + I L ++ + + G + LT EY+ + L + ++K H+Y Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ + +I+V + +LRKK+ G + I T G+GY L Sbjct: 181 QDDDRDSNVIEVLVNRLRKKI-----GADAIRTRRGQGYQL 216 >gi|156935705|ref|YP_001439621.1| DNA-binding transcriptional regulator BasR [Cronobacter sakazakii ATCC BAA-894] gi|156533959|gb|ABU78785.1| hypothetical protein ESA_03574 [Cronobacter sakazakii ATCC BAA-894] Length = 220 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L L +E + + +G L + E+ IILDLGL D G Sbjct: 1 MKLLIVEDDLLLQEGLALALGNEGYALDCAANAAEGDALLQSGEYSLIILDLGLPDKDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + ++TPV IL+ ++ED+V GL +GADDY+ KPF EL AR RA++RR + Sbjct: 61 TLLSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ D+++NL + V +QG + +T KE+ ++ L +R T+ +E +Y Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGMPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D+P ++V I LR+KL GK I T+ G GY L Sbjct: 181 WQDDPSSNTLEVHIHNLRRKL-----GKTRIRTIRGVGYRL 216 >gi|330719832|gb|EGG98328.1| Two-component system regulatory protein [gamma proteobacterium IMCC2047] Length = 227 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 132/221 (59%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++ED+ L + L ++ +++ GE+G+ + +D I+DLGL + G Sbjct: 1 MRALIVEDEPQLQQQLADTLCAKGYSLDRAGDGEEGLYYGNEFNYDIAIIDLGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++R LR S PV IL+ + +DKV GL++GADDY++KPF+ EEL+AR+ A++RR+ Sbjct: 61 ELIRQLRANDRSMPVLILTARDNWQDKVEGLEAGADDYLAKPFHMEELLARLNALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S I G L +++ + V + ++ LT EY+++E L L ++K H+Y Sbjct: 121 GKADSTIKIGYLQLDIRTQQVLAREQQVSLTAYEYKVLEYLMLNPQKVISKTELTEHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+VFI +LRKKL + N IET+ GRGY L Sbjct: 181 QDYDRDSNVIEVFIGRLRKKL-DPDNLHNPIETLRGRGYRL 220 >gi|163850840|ref|YP_001638883.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218529660|ref|YP_002420476.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240137967|ref|YP_002962439.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens AM1] gi|163662445|gb|ABY29812.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218521963|gb|ACK82548.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|240007936|gb|ACS39162.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens AM1] Length = 225 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ + + L+ + GE+G L + +DAIILD+GL G Sbjct: 1 MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RAI+RR+ Sbjct: 61 TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G I LT EY+++ L +++ HLYD Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKKL+ + I+TV G GY++ N Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLIDPN 219 >gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 220 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V ++G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G + I V G GY++ ++A Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GADLIRNVRGLGYMIAKDA 220 >gi|23012185|ref|ZP_00052333.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 225 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ + + L+ + GE+G L + +DAIILD+GL G Sbjct: 1 MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RAI+RR+ Sbjct: 61 TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G I LT EY+++ L +++ HLYD Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKKL+ + I+TV G GY++ N Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLIDPN 219 >gi|291534287|emb|CBL07399.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 224 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI L ED++ L I L + ++V G I++ E+DA+ILD+ + GF Sbjct: 1 MRIFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIMMPKADGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR +TPV L+ ++ D+V+GL SGA+DY+ KPF+ EEL AR+RA++R S Sbjct: 61 TVLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEELSARLRAMMRGSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ DLS++ + V G I L+ KEY M+E + L++EM +H+++ Sbjct: 121 GVTDNVLHIADLSLDCTSHRVMRGGKEITLSAKEYAMLEYFMYNQGRVLSREMIEDHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E I+DV+I LRKK+ + K I TV GRG+++RE Sbjct: 181 FDYEGGTNIVDVYISYLRKKI-DGGYDKKLIHTVRGRGFIMRE 222 >gi|254560526|ref|YP_003067621.1| phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens DM4] gi|254267804|emb|CAX23651.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens DM4] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ + + L+ + GE+G L + +DAIILD+GL G Sbjct: 1 MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RAI+RR+ Sbjct: 61 TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G I LT EY+++ L +++ HLYD Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGTPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKKL+ + I+TV G GY++ N Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLIDPN 219 >gi|257454835|ref|ZP_05620086.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60] gi|257447768|gb|EEV22760.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60] Length = 222 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 132/227 (58%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A S+ L+ E + V G + I K +D I+LDLGL +I G Sbjct: 1 MRVLLVEDDVFIADSLIDSLEEEAYAVDWAKDGREAILTLKVEAYDVILLDLGLPEIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR AKI TPV +L+ I+D+V+GL +GADDY++KPF EL+AR+R +VRRS+ Sbjct: 61 SVLETLRSAKIDTPVLVLTARDQIKDRVKGLDAGADDYMTKPFAMSELLARMRVLVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G++ + + GDL+++++ K ++ G I +T KEY ++ + +K N +Y+ Sbjct: 121 GNSHNTLQVGDLTLDINVKRLKRDGIEIDITAKEYMLLTTFMNAPDKVFSKSELENSIYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E I+ I LRKK+ G+ I+ + G G+ + ++D Sbjct: 181 WEAGIESNAIEFLIYGLRKKI-----GQKRIKNIRGLGWYISAESQD 222 >gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 136/224 (60%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD+ I E + V G +G+ FDA++LD L + G Sbjct: 4 RLLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHATDGGFDAVVLDRMLPGLDGLA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V++++R A + TPV +L+ MS+++++V+GL++GADDY+ KPF+ +EL ARI A++RR + Sbjct: 64 VIKSMRAAGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQE 123 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + DL ++L + V G I LT +E+Q++E RKN +++ M L ++D Sbjct: 124 SEETPTLKCRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVWD 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P ++DV I KLRK+L + AGG IETV G GY++ ++ Sbjct: 184 YHFDPNTNVVDVHISKLRKQL-DEAGGPPLIETVRGAGYMVSDD 226 >gi|241888759|ref|ZP_04776065.1| transcriptional regulatory protein DltR [Gemella haemolysans ATCC 10379] gi|241864435|gb|EER68811.1| transcriptional regulatory protein DltR [Gemella haemolysans ATCC 10379] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LA ++E MLK N++V V + G+D ++ ++D ILD+ + + G Sbjct: 1 MRLLLAEDERDLADALEAMLKHNNYSVDVVNNGQDALDYLMLDDYDGAILDVMMPQMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR K STPV +L+ S IEDKV GL SGADDY++KPF EL+AR+R++ RR Sbjct: 61 TVVKKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVTRELLARVRSMTRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G++S++ + + ++ L+ KEYQM+E+L + E FL ++ Sbjct: 121 TFTSNVLELGNVSLSKYTFELSTEKDKVRLSNKEYQMMEMLMRNPGNVIQTEQFLERIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E+ ++ V I LRKKL A +I+ GY L Sbjct: 181 YDSDSEINVVWVNISYLRKKLK-ALDANIHIKATRNVGYTL 220 >gi|307729779|ref|YP_003907003.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584314|gb|ADN57712.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 219 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + IE L+ F V G + ++LDLGL +PG Sbjct: 1 MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKASLALDTTSYALVVLDLGLPRVPGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR A PV +L+ ++ D+V GL++GADDY+ KPF+ EL+AR RA++RR++ Sbjct: 61 ELLRRLRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + LI DLSVN A+ VEV G R+ LT +E+ ++ L + ++ LY Sbjct: 121 GRSVELIRYRDLSVNPAAQAVEVAGRRVSLTSREWAILLQLLTNQGIPQSRSRLEESLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E E I+V + LRKKL G N I TV GYV+ Sbjct: 181 WQEEIESNAIEVHVSNLRKKL-----GANLIRTVRNIGYVV 216 >gi|125973317|ref|YP_001037227.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256006166|ref|ZP_05431082.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281417519|ref|ZP_06248539.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125713542|gb|ABN52034.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255989869|gb|EEU00035.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281408921|gb|EFB39179.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316940451|gb|ADU74485.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 137/227 (60%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 M+ILL+ED+ L+ ++ LK N Y+ D+ DGI ++ + ++ IILD L Sbjct: 1 MKILLVEDEVRLSEALVHTLKKNN---YIVDVAFDGITGQQMAETNMYNVIILDRMLPKK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLR LR ++TPV IL+ S++++V GL SGADDY++KPF+K EL+ARIRA+ R Sbjct: 58 DGLDVLRDLRKQGVTTPVLILTAKDSVKNRVEGLDSGADDYLTKPFSKSELLARIRALGR 117 Query: 118 R-SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R S I G++S N ++V G I LT KE Q++E+L KN ++KE L Sbjct: 118 RQSEIFVNEEINIGNMSFNCMKGEIKVNGQTIKLTSKESQILEILIKNKNIVVSKEQLLE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + E+ I+V++ LRKKLS G IET+ RGY L+E Sbjct: 178 KVWGFQTDIELNNIEVYLSYLRKKLSKLDCGI-VIETIRARGYCLKE 223 >gi|330993828|ref|ZP_08317760.1| Transcriptional regulatory protein pcoR [Gluconacetobacter sp. SXCC-1] gi|329759096|gb|EGG75608.1| Transcriptional regulatory protein pcoR [Gluconacetobacter sp. SXCC-1] Length = 245 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 135/221 (61%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +A + L+S +++V G G+ + FD +I+D L ++ G Sbjct: 24 RILLVEDDSKIAQEVIEELESRHYHVQHEVSGAAGLAMGLNAHFDVMIVDRMLPELDGLS 83 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR ++ PV +LS +S+++D+V GL++G DDY++KPF EEL AR+ A++RR Sbjct: 84 LIETLRERRVHVPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARLEALLRRPDN 143 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ G L ++L +TV +G I L +E++++E L R N LT+ M L +++ Sbjct: 144 SRHTMLRAGPLEMDLIERTVMREGVPIELLPREFRLLEYLMRRPNQVLTRNMLLEDVWNY 203 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R P+ ++DV I KLR+K+ + +G I+++ G G++LR Sbjct: 204 RFIPQTNLVDVHIGKLRRKI-DESGRPPLIQSIRGAGFMLR 243 >gi|320156641|ref|YP_004189020.1| two-component system response regulator QseB [Vibrio vulnificus MO6-24/O] gi|319931953|gb|ADV86817.1| two-component system response regulator QseB [Vibrio vulnificus MO6-24/O] Length = 219 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 132/227 (58%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L I ++S +V +L +DGI+ E+DAI+LDLGL + Sbjct: 1 MKILVVEDDPRLGEQI---IESLEKTGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ V QG + LT EY++I + +++ + H Sbjct: 118 RASGNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFVHNADKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y + + I+VFI ++RKK++ N I+TV G GY L N Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PNIIKTVRGLGYQLNAN 219 >gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 135/226 (59%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED K+LA++I L+ ++V + G++G+ + +D IILD+ L I G Sbjct: 1 MRILVIEDQKSLANTIARRLQEVGYSVDMALDGQEGLNFIQTASYDLIILDIMLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R + TPV L+ SIED+V GL +GADDY+ KPF+ +EL+AR+RA++RR Sbjct: 61 TLLKLVRNKGVQTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRRYS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL ++ +++ V G I LT KEY ++E L+ K LT+ H+++ Sbjct: 121 QIKDPIIQIKDLVIDTNSRKVTRAGKVIDLTSKEYSVLEYLARNKGRVLTRSQIAEHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E I+DV+I LR+K+ + K I T+ G GY+LR+ + Sbjct: 181 YDFEGTSNIVDVYIRYLRRKIDDGFPEK-LIHTIRGVGYMLRDEKR 225 >gi|78063615|ref|YP_373523.1| two component heavy metal response transcriptional regulator [Burkholderia sp. 383] gi|77971500|gb|ABB12879.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 223 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 136/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L +FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEPKMASYLRKGLMEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPEMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR K TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLKRLRAQK-QTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ DL V+L + V RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RNVRDILHVADLEVDLIRRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ N K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNTY-EKKLIHTIRGMGYVLEDRS 223 >gi|116671596|ref|YP_832529.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116611705|gb|ABK04429.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 224 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 126/218 (57%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ LA ++++ L++ + LG DG++L + D ++LDLGL D+ G EV Sbjct: 4 VLIIEDEAQLARAMQINLRAHGYQAITAGLGADGLKLAAQHPVDIVVLDLGLPDMDGVEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R S PV +LS + EDKV L +GADDY++KPF +EL+AR+RA RRS Sbjct: 64 IRGIR-GWSSVPVIVLSARHASEDKVEALDAGADDYVTKPFGLDELLARLRAASRRSPAQ 122 Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ V T D V+L A+ V GH I LT E+ ++ELL + ++++ L ++ Sbjct: 123 REAPTVETADFVVDLAARKVVRDGHEIRLTPTEWNILELLVRNQGKLVSQQQLLTQVWGQ 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + + V++ +LR+KL ++ T G GY Sbjct: 183 AYAKETQYLRVYLAQLRRKLEQDPARPRHLHTEAGMGY 220 >gi|319406896|emb|CBI80531.1| two-component system regulatory protein [Bartonella sp. 1-1C] Length = 222 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L H + +K + GED L +DA+ILD+GL+ + G Sbjct: 1 MRILIVEDDRDLNHQLAKAVKDAGYVFDSAFNGEDAYFLGSTESYDAVILDIGLSCMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ R S PV +L+ DKVRG+ +GADDY+ KPF+ EE++AR+RA++RRS Sbjct: 61 QVVERWRKEGYSMPVLMLTARDCWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G++ ++ V ++G I LT E++++ L + ++K + HLYD Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFIEGQLIKLTSYEFRLLSYLMHHSDKVVSKTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+VFI +LRKKL G + IETV G GY ++ Sbjct: 181 QDFDKDSNTIEVFIRRLRKKL-----GVDSIETVRGLGYRIK 217 >gi|269798762|ref|YP_003312662.1| transcriptional regulator [Veillonella parvula DSM 2008] gi|269095391|gb|ACZ25382.1| two component transcriptional regulator, winged helix family [Veillonella parvula DSM 2008] Length = 224 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ L L++EN V G+ I+ +D I++D+ + + G Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R +TPV +L+ S++DKV L +GADDY+ KPF+ EEL ARI A+ RR+ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HAQ+ I G L++N+ +TV+ G I LT KE+ ++ L+ +N L+++ L+H+++ Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +IDV+I LRKK+ K I+TV G GYVL+ Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVK-LIQTVRGVGYVLK 221 >gi|254524291|ref|ZP_05136346.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] gi|219721882|gb|EED40407.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] Length = 229 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 131/221 (59%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ AH + L + + V + G G+ L + +++D I+LD+ L + GF Sbjct: 1 MKLLIVEDESKTAHYLRTGLGEQGWAVDLASDGVTGLHLAREFDYDVIVLDVMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR +K TPV +L+ ++D+V GL GADDY+ KPF+ EL+AR++A+VRR R Sbjct: 61 NVLRELRRSK-QTPVIMLTARDRVDDRVHGLGQGADDYLVKPFSFIELLARLQALVRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL VNL A+ G R+ LTGKE+ ++ LL+ R+ L+K + ++D Sbjct: 120 QQEPTELQVGDLQVNLLARRAYRDGARLDLTGKEFALLALLAQRRGQILSKTVIAAQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++V I +LR KL K + TV G GYVL Sbjct: 180 INFDSNTNVVEVAIKRLRSKLDGPYPSK-LLHTVRGMGYVL 219 >gi|259047168|ref|ZP_05737569.1| response regulator [Granulicatella adiacens ATCC 49175] gi|259036218|gb|EEW37473.1| response regulator [Granulicatella adiacens ATCC 49175] Length = 245 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 138/227 (60%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K L+ +EL L+ E + V G G++ +DAI+LDL L ++ G E Sbjct: 20 RILIIEDEKNLSRFVELELQHEGYETKVCSDGRTGLQTAIDESWDAILLDLMLPEMNGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V+R LR K TPV I++ S+ D+V GL GADDY+ KPF EE++AR+RA+ RR Sbjct: 80 VVRRLRQVK-QTPVIIMTARDSVMDRVVGLDQGADDYVVKPFEIEEILARLRALFRRLQM 138 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 SR Q+ + DL + ++ + V G I LT KEY+++ LL + L++E+ L Sbjct: 139 EEQSRNIKQTKVEYRDLVIEVENRVVRRAGEVIDLTKKEYELLLLLMENIDIVLSREILL 198 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++E E +IDV++ +R K+ + G ++YI+TV G GYV+R Sbjct: 199 KKVWGYKNEVETNVIDVYVRYIRNKI-DVPGKESYIQTVRGTGYVMR 244 >gi|254425657|ref|ZP_05039374.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188080|gb|EDX83045.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 640 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 125/222 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++DD AL + L + + V + GE E + +D IILD+GL DI G Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR KI++P+ +L+ + + KV+ L +GADDY+ KPF+ EEL ARIRA+ RR Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL V+ + V Q + +T KEY M+EL N + + +++L+ Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D P + + LR+KL K++I+TV+G GY L+ Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLK 248 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 2/121 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++++ I+DD + ++ +L F + + + + D +++D+ + + G Sbjct: 512 LKVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGL 571 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E+ R LR + P+ LS + + GADD+ISK EL R+ ++R Sbjct: 572 EICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKR 631 Query: 119 S 119 + Sbjct: 632 T 632 >gi|323528206|ref|YP_004230358.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385208|gb|ADX57298.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 224 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ ENF V GE + +D ++LDL L + G Sbjct: 1 MKLLLVEDNTELAHWIANLLRLENFAVDSVPDGECADVVLTTQRYDVVVLDLRLPRMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S +DKV +GADDY+ KPF+ ELVARI+A++RR Sbjct: 61 EVLARLRRRGDNVPVIMLTAHGSTDDKVDCFSTGADDYVVKPFDARELVARIKALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S + GDL D + R+ L +E+ ++E L LRK T++K + + ++ Sbjct: 121 GGMSSCLTCGDLQYLSDTREFFHNDARLALRRREHTVLETLMLRKGKTVSKAVLMESVFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DEP ID++I +LRK LSN++ I T+ G GY+LR Sbjct: 181 LDDEPSADAIDIYIHRLRKHLSNSSA---QITTLRGLGYILR 219 >gi|157374930|ref|YP_001473530.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157317304|gb|ABV36402.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 224 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 128/219 (58%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 1 MRILVVEDDPLLSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDIAIVDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A + PV IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 SLIQNLRDAGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I +G L V+L AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 121 GFVKPQITSGALEVDLAAKQVSLNNEPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G +N + T+ G+GY Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-GGIENPVVTIRGQGY 217 >gi|325276399|ref|ZP_08142172.1| DNA-binding response regulator [Pseudomonas sp. TJI-51] gi|324098466|gb|EGB96539.1| DNA-binding response regulator [Pseudomonas sp. TJI-51] Length = 220 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL I L+ E + + G++G+ FD ILDLGL + G Sbjct: 1 MRLLLVEDDTALGEGICDGLRQEGYTLDWLRDGQNGVHALLHETFDLAILDLGLPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A S PV IL+ +++D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 EVLRRVRGAGNSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI + ++ + V QG + LT KEY+++ L + T+E LY Sbjct: 121 GRAKVLIEHAGVMLDPATQQVHYQGLEVILTPKEYRLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +EPE ++V I LRKKL+N I TV G GY++ A Sbjct: 181 WDEEPESNTLEVHIYHLRKKLNNG-----LIRTVRGIGYLVEGKA 220 >gi|300718589|ref|YP_003743392.1| two-component system response regulator [Erwinia billingiae Eb661] gi|299064425|emb|CAX61545.1| Two-component system response regulator [Erwinia billingiae Eb661] Length = 220 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 M++L++EDD L + L +E Y D ++G E C + + I+LDLGL D Sbjct: 1 MKLLVVEDDALLLGGLVQALTTEG---YAVDAAKNGAEACALLQSGQYSLIVLDLGLPDR 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++LR R I PV IL+ ++ED+V GL +GADDY+ KPF EL AR+RA++R Sbjct: 58 DGRQLLRQWRKETIDLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELKARVRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +G + +L+ GDLS+NL ++ V + + LT KE+ ++ L +R + T+ +E Sbjct: 118 RYQGRSDNLLQQGDLSLNLSSQQVYIDNQPVELTPKEFALLTRLLMRISQTVHRETLQQD 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LY +D+ ++V I LR+KL GK+ I+TV G GY L E Sbjct: 178 LYSWQDDTGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRLEE 218 >gi|333030914|ref|ZP_08458975.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332741511|gb|EGJ71993.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 226 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 135/225 (60%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+ED+ ++ + L+ NF+V + G + +L E+ IILD+ L DI G Sbjct: 1 MDLLLVEDNSRISEFMVKGLQENNFSVTLAVNGVEARQLITSKEWSLIILDIMLPDIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ R KI+TP+ ++S + EDK++ L GADDY+SKPF+ ELVARI A+ RRSR Sbjct: 61 ELLQYTRFKKINTPILVVSALGDPEDKIKALNYGADDYLSKPFHFGELVARINALTRRSR 120 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 HA +L+ + +N+ V +G IHLT +E+++++LL + L++ +N Sbjct: 121 SENTHASTLLECKGIQLNVTEHLVYKEGALIHLTLQEFKLLQLLMENLDKVLSRTEIINS 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E I+DV+I LR K+ + + K IETV GRGY++R Sbjct: 181 VWGLDYESNTNIVDVYISYLRNKIEDKSKAK-IIETVQGRGYIIR 224 >gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] Length = 225 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 125/226 (55%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED++ L SI L+ + + G++G+ELC +D I+LDL L I G Sbjct: 1 MHILIIEDEEQLCRSIAEGLRMDGYETDTCLDGDEGLELCTTENYDLILLDLNLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R STPV ILS IEDKV GL GA+DY++KPF+ EEL ARIR++ RR Sbjct: 61 DILRQFRETNSSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRRF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G +S + + + + LT KE ++E L +N ++ E + H++D Sbjct: 121 IQENVCLKCGHISFDTRTRKAHIDSEELSLTRKESALLEYFMLHQNRIISPEELIEHIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G I V I LRKKL AA G + I+ G+GY+L E+ K Sbjct: 181 GSVNSFSNSIRVHISSLRKKL-RAALGNDPIQNKVGQGYILMEDLK 225 >gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87] gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87] Length = 219 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 134/220 (60%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA IEL LK E++NV + G G++ +D IILDL L +I G ++ Sbjct: 4 ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPNINGLKI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + STP+ I++ DKV GL GADDYI KPF+ EEL+ARIRAI+RR Sbjct: 64 CRQIRQEQ-STPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ--P 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 +++I + ++ DA V V G ++ LT EY ++ +L+ +N + +E L+H++ Sbjct: 121 QKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGFN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL K+ IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219 >gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 233 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 129/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++A+ ++ L E + V D GED + ++D IILD+ L G Sbjct: 1 MRILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIFDVDYDLIILDIMLPVKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R ISTP+ +L+ + S EDKV GL +GADDY+ KPF+ EL+ARIRAI+RR Sbjct: 61 KVCREVRENGISTPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ VE G RI LT +EY ++E L N L++ + H+++ Sbjct: 121 TILNLKLQVGDLVLDTVTHHVERSGKRIDLTPREYALLEFLMRHPNQVLSRTRIVEHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E I+DV+I LRKK+ N K I TV G GY++ E Sbjct: 181 LDFYTESNIVDVYIRYLRKKIDNGFENK-LIHTVHGVGYMIGE 222 >gi|26989071|ref|NP_744496.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|148548557|ref|YP_001268659.1| two component transcriptional regulator [Pseudomonas putida F1] gi|24983899|gb|AAN67960.1|AE016428_8 DNA-binding response regulator [Pseudomonas putida KT2440] gi|148512615|gb|ABQ79475.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 222 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA + L+ + + V G D + + +D IILDLGL +PG Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R A ++TPV IL+ S +++ GL++GADDY+SKPF+ EEL RI+A++RR+R Sbjct: 61 DVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + L ++ + V G + LT E++++ L L+K HLY Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDVQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG E + +++V + LR+KL G++ IET G+GY+ Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYI 216 >gi|240146170|ref|ZP_04744771.1| transcriptional activator protein Irlr [Roseburia intestinalis L1-82] gi|257201702|gb|EEU99986.1| transcriptional activator protein Irlr [Roseburia intestinalis L1-82] Length = 224 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI L ED++ L I L + ++V G I++ E+DA+ILD+ + GF Sbjct: 1 MRIFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIMMPKADGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR +TPV L+ ++ D+V+GL SGA+DY+ KPF+ EEL AR+RA++R S Sbjct: 61 TVLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEELSARLRAMMRGSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ DLS++ + V G I L+ KEY M+E + L++EM +H+++ Sbjct: 121 GVTDNVLHIADLSLDCTSHRVMRGGKEITLSAKEYAMLEYFMYNQGRVLSREMIEDHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++DV+I LRKK+ + K I TV GRG+++RE Sbjct: 181 FDYEGGTNVVDVYISYLRKKI-DGGYDKKLIHTVRGRGFIMRE 222 >gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 224 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 129/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K +A I+ L+ E + V+ GE+G++L FD I+LD L G Sbjct: 1 MRILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR K TP+ +L+ S+ED V GL SG+DDY++KPF EL+AR+RA++RRS Sbjct: 61 SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++L V + I LT KEY ++E + LT+ M H++D Sbjct: 121 LDRGAEIRFADLRLDLVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IIDV++ LRKK+ A K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDREA-DKKLIHTVRGVGYILKE 222 >gi|238757565|ref|ZP_04618750.1| Transcriptional regulatory protein basR/pmrA [Yersinia aldovae ATCC 35236] gi|238704327|gb|EEP96859.1| Transcriptional regulatory protein basR/pmrA [Yersinia aldovae ATCC 35236] Length = 220 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 129/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ L + + L SE + L + ++ +ILDLGL D G Sbjct: 1 MKLLIVEDDELLQRGVAMALTSEGYACDCAGTAAQAHSLLQTSQYSMVILDLGLPDQDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R +++ PV IL+ ++ED+V GL +GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 VLLRQWRRQQVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L+ DLS+NL ++ V +QG I +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GLSDNLVEQDDLSLNLSSQQVCLQGQPIEITPKEFAILSRLIMRAGQTINRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LR+KL GK+ I T+ G GY L Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTIRGIGYRL 216 >gi|313499571|gb|ADR60937.1| Winged helix family two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 222 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA + L+ + + V G D + + +D IILDLGL +PG Sbjct: 1 MRLLLVEDNVPLADELTTGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R A ++TPV IL+ S +++ GL++GADDY+SKPF+ EEL RI+A++RR+R Sbjct: 61 DVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + L ++ + V G + LT E++++ L L+K HLY Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDVQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG E + +++V + LR+KL G++ IET G+GY+ Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYI 216 >gi|27366129|ref|NP_761657.1| Two-component system response regulator QseB [Vibrio vulnificus CMCP6] gi|27362329|gb|AAO11184.1| Two-component system response regulator QseB [Vibrio vulnificus CMCP6] Length = 219 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 132/227 (58%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L I ++S +V +L +DGI+ E+DAI+LDLGL + Sbjct: 1 MKILVVEDDPRLGEQI---IESLEKTGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ V QG + LT EY+++ + +++ + H Sbjct: 118 RASGNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFVHNADKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y + + I+VFI ++RKK++ N I+TV G GY L N Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PNIIKTVRGLGYQLNAN 219 >gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 259 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 139/237 (58%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA ++L L+ EN+ V + G G++ FDAI+LDL L D+ G E Sbjct: 24 KILIIEDEKNLARFVQLELQHENYETVVENNGRKGLDRALNENFDAILLDLMLPDLNGLE 83 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R +K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 84 IARRVRQSK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 142 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIH--------LTGKEYQMIELLSLRKNTTLTK 171 AQ++ V +V T+E +H LT +EY ++ L KN +++ Sbjct: 143 EKEAQNVTVAKQQTVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIHNKNNVVSR 202 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + LN ++ E +++V++ LR K+ + G +YI+TV G GY++R+ D+ Sbjct: 203 DELLNKIWGPESNIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRDEDDDK 258 >gi|148557410|ref|YP_001264992.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148502600|gb|ABQ70854.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 225 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LLIEDD +A + L+ V G +G+ FD I+LD L + G Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R +TPV ILS + +++++RGL++G DDY+ KPF ELVAR+ A+ RR Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A++ + +GDL+++L +TV G RI LT +E++++E L +T+ M L H++ Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ IID + +LR+KL IETV G GYV+R + Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGF-DTPLIETVRGTGYVVRPS 224 >gi|144899128|emb|CAM75992.1| two-component transcriptional regulator FeuP, winged helix family [Magnetospirillum gryphiswaldense MSR-1] Length = 222 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ALA ++ L++ F V GE+G L +DA +LDLGL + G Sbjct: 1 MRILIVEDEPALAFRLQQALEAAGFAVDTAYDGENGWHLGDTEPYDAAVLDLGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ +K++G +GADDY++KPF +E+V R+RA++RR+ Sbjct: 61 SVLSRWREAGRDLPVLILTARGRWSEKMQGFNAGADDYVTKPFEMDEIVYRLRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+Q + G + ++ + V + G + LT +E++++ L +++ + H+YD Sbjct: 121 GHSQPELACGPVRLDTNGGRVSLDGQVLQLTAQEFRILSYLMHHPGKVVSRTELMEHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LRKK+ G I+TV G+GYVL Sbjct: 181 RNFDSDSNVLEVMIGRLRKKI-----GAEMIQTVRGQGYVL 216 >gi|163854400|ref|YP_001628698.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163258128|emb|CAP40427.1| two-component response regulator [Bordetella petrii] Length = 220 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ LA +E L++ + V G+ L FDA++LDLGL + G Sbjct: 1 MRVLLIEDEPTLAAQLEQALRAAGYTVDRAADGQTAHYLGDVEAFDAVVLDLGLPVLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A + PV IL+ S +KV G+ +GADDY++KPF+ EEL+AR+RA++RR+ Sbjct: 61 TVLRRWRAAGRNMPVLILTARDSWHEKVAGIDAGADDYLAKPFHMEELLARVRALIRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G L ++ V + G I LT E++++ +L ++++ + HLY Sbjct: 121 VHASAEWRCGPLMLDTRQARVTLDGAPITLTSHEFKVLAMLMQHAGEVVSRQQLVEHLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + IDVFI +LRKKL + IETV G GY L N+ Sbjct: 181 QDFDRDSNTIDVFIGRLRKKLP-----PDTIETVRGLGYRLAGNS 220 >gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 220 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G + I V G GY++ ++A Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GADLIRNVRGLGYMIAKDA 220 >gi|90413072|ref|ZP_01221069.1| putative transcriptional regulatory protein PhoP [Photobacterium profundum 3TCK] gi|90325915|gb|EAS42361.1| putative transcriptional regulatory protein PhoP [Photobacterium profundum 3TCK] Length = 224 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 131/226 (57%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L+H ++ L V E+G+ + Y D ++D+GL D G Sbjct: 1 MRILIVEDDQILSHHLKSQLSELGHQVQCAGTAEEGLFFAQNYPNDIAVVDIGLPDRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R + PV IL+ ++ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS Sbjct: 61 SLIKDMRKKGLRLPVLILTARANWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GD+ V+L AK V V + LT EY ++E L ++K+ L+ LY+ Sbjct: 121 GFVKPEMSAGDIRVDLLAKQVFVGEALLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E + I+V I +LRKK G N I T+ G+GY+ A+ Sbjct: 181 DQ-EGDPNTIEVMISRLRKKFIT-TGQDNPITTIRGQGYIFELQAQ 224 >gi|188580664|ref|YP_001924109.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179344162|gb|ACB79574.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 225 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ + + L+ + GE+G L + +DAIILD+GL G Sbjct: 1 MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + TPV IL+ DKV G +GADDY++KPF+ EEL+AR+RAI+RR+ Sbjct: 61 TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G ++++ + V V G I LT EY+++ L +++ HLYD Sbjct: 121 GHASSQISCGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+VF+ +LRKKL+ + I+TV G GY++ N Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLIDPN 219 >gi|161506627|ref|YP_001573748.1| two component heavy metal response transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348849|ref|YP_001942044.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|160346865|gb|ABX19948.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189338987|dbj|BAG48054.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 223 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 136/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+ G+ L FD ++LD+ L ++ GF Sbjct: 1 MRILIVEDEPKMASYLRKGLTEASYTVDVAENGKIGLFLALHENFDLVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR K TPV +L+ +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ Sbjct: 61 EVLKRLRAEK-QTPVLMLTAREAIEDKVAGLELGADDYLHKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +++ D+ ++L + V +RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RSIRDILLVADMEIDLLKRRVRRGDNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D I +LR K+ NA K I T+ G GYVL + + Sbjct: 180 MNFDSDTNVVDAAIKRLRAKVDNAY-DKKLIHTIRGMGYVLEDRS 223 >gi|260596190|ref|YP_003208761.1| DNA-binding transcriptional regulator BasR [Cronobacter turicensis z3032] gi|260215367|emb|CBA27379.1| Transcriptional regulatory protein pmrA [Cronobacter turicensis z3032] Length = 220 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L L +E + + +G L + E+ IILDLGL D G Sbjct: 1 MKLLIVEDDLLLQEGLALALGNEGYALDCAANATEGDALLQSGEYSLIILDLGLPDKDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + ++TPV IL+ ++ED+V GL +GADDY+ KPF EL AR RA++RR + Sbjct: 61 TLLSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ D+++NL + V +QG + +T KE+ ++ L +R T+ +E +Y Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGLPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D+P ++V I LR+KL GK I T+ G GY L Sbjct: 181 WQDDPSSNTLEVHIHNLRRKL-----GKTRIRTIRGVGYRL 216 >gi|269119156|ref|YP_003307333.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268613034|gb|ACZ07402.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 230 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 138/232 (59%), Gaps = 4/232 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ +A ++ +L+ N++V + GEDG++ +DA+ILD+ L G Sbjct: 1 MKILIVEDEIMIAEAVAQVLRKNNYSVDIAADGEDGLDCALSGIYDAVILDIMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +KI PV +L+ S EDKV+GL GADDY+ KPF EEL+AR+RA+ RR + Sbjct: 61 SVLKLLRESKIPVPVILLTAKSQTEDKVQGLDFGADDYLEKPFQMEELLARLRALTRR-K 119 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++ GD+S+N + + ++I+LT KE Q +ELL KNT ++KE + L Sbjct: 120 GELIFDGIMKFGDISLNPHLLLLSCRDNKINLTLKESQALELLITNKNTAVSKETIIEKL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + E E ++ I LRKKL AG I+ + G GY+++ ++ C Sbjct: 180 WGYDSEAEDNHAEIHISLLRKKLKQ-AGSVLLIKAIRGIGYIIKYPEEESAC 230 >gi|227877766|ref|ZP_03995799.1| two-component system regulator [Lactobacillus crispatus JV-V01] gi|256843617|ref|ZP_05549105.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256850093|ref|ZP_05555523.1| two-component system regulator [Lactobacillus crispatus MV-1A-US] gi|262047381|ref|ZP_06020338.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380726|ref|ZP_06626774.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|312984347|ref|ZP_07791689.1| DNA-binding response regulator CsrR [Lactobacillus crispatus CTV-05] gi|227862625|gb|EEJ70111.1| two-component system regulator [Lactobacillus crispatus JV-V01] gi|256615037|gb|EEU20238.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256713065|gb|EEU28056.1| two-component system regulator [Lactobacillus crispatus MV-1A-US] gi|260572355|gb|EEX28918.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290922690|gb|EFD99644.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|310894272|gb|EFQ43352.1| DNA-binding response regulator CsrR [Lactobacillus crispatus CTV-05] Length = 238 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 139/237 (58%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K L+ +EL L+ EN+ V + G G+E +FDAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLSRFVELELQHENYETVVENNGRKGLEDALSQDFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 63 IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ DL++ + V G I LT +EY ++ L KN +++ Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + LN ++ E +++V++ LR K+ +A G +YI+TV G GY++R+ D+ Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DAPGQPSYIKTVRGTGYMVRDEDDDQ 237 >gi|295097669|emb|CBK86759.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 220 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L L +E + + + L + E+ +ILDLGL D G Sbjct: 1 MKLLIVEDDLLLQEGLALALGNEGYALDCATTAAEADALIQSGEYSLVILDLGLPDKDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + PV IL+ +IED++ GL SGADDY+ KPF EL AR+RA++RR + Sbjct: 61 TLLCQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ GD+++NL + V Q + +T KE+ ++ L +R T+ +E +Y Sbjct: 121 GHSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D+P ++V I LR+KL GK+ I+TV G GY L Sbjct: 181 WQDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRL 216 >gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 246 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 126/231 (54%), Gaps = 5/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ + + L+ E F V G ++ D +ILD+ L DI GFE Sbjct: 7 RVLVVDDEQNITDLVATALRYEGFQVATAHTGVQALQTAAKTHPDLVILDVMLPDIDGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L + TPV L+ + EDKVRGL G DDY++KPF+ ELVAR+ AI+RR+RG Sbjct: 67 VARRLGREGVPTPVLFLTARDATEDKVRGLTVGGDDYVTKPFSLAELVARVHAILRRTRG 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 S +V DL ++ D V G I LT EY+++ L LT+ L+H++D Sbjct: 127 TTNSRLVFADLELDDDTHEVTRGGRLIELTATEYRLLRYLLANARKVLTRAQLLDHVWDY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL---RENAKDET 229 + +++ +I LRKK+ A G I TV G GY L REN K +T Sbjct: 187 DFGGDSGVLETYISYLRKKID--AEGPPLIHTVRGVGYTLRLPRENEKSKT 235 >gi|291548336|emb|CBL21444.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 225 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED+K L SI L+ + + G++G+ELC +D I+LDL L + G Sbjct: 1 MHILIIEDEKQLCQSIAEGLRMDGYEADTCFDGDEGLELCLVENYDLILLDLNLPGVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R + STPV ILS I+DKV GL GA+DY++KPF+ EEL ARIR++ RR Sbjct: 61 EILRQFRESDTSTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G +S + + + G + LT KE ++E L +N ++ E + H++D Sbjct: 121 IQQDVCLQCGRISFDTRTRKASIDGLPLSLTRKESSLLEYFLLHQNRIISPEEMIEHIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G I V I LRKKL A G + I+ G+GY+L E+ + Sbjct: 181 GSVNSLSNSIRVHISSLRKKLRTALGF-DPIQNKIGQGYILTEDIQ 225 >gi|237756293|ref|ZP_04584848.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense SS-5] gi|237691541|gb|EEP60594.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense SS-5] Length = 220 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 134/222 (60%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDDK L I+ L+ E F V + G E ++ I+LDL L G Sbjct: 1 MRLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENYEVIVLDLMLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +LR I TPV IL+ S+EDK++GL +GADDY++KPF+ +ELVARI+A++RR Sbjct: 61 SILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ ++ GD+ V+L + V+V+G + LT E +++ +L+L+ N L+K LY Sbjct: 121 NVSKGIVSFGDVEVDLVNQNVKVKGKDVELTAMELKLLMMLALKSNRILSKTYIEQSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P+ +I+V I +LRKKL YI+TV G GY+L+ Sbjct: 181 WEGSPDSNVIEVLISRLRKKLDPEG---KYIKTVKGLGYILK 219 >gi|329769101|ref|ZP_08260522.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325] gi|328839447|gb|EGF89024.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325] Length = 225 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED++ LA ++E MLK N++V D G+D ++ ++D ILD+ + + G Sbjct: 1 MRILLAEDERDLADALEAMLKHNNYSVDTVDNGQDALDYLMLDDYDGAILDVMMPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR K STPV +L+ S IEDKV GL SGADDY++KPF +EL+AR+R++ RR Sbjct: 61 TVVQKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVIKELLARVRSMTRRQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G++S++ + + ++ L+ KEYQM+E+L + E FL ++ Sbjct: 121 TFTSNVLELGNVSLSKYTFELSTEKDKVRLSNKEYQMMEMLMRNPGNVIQTEQFLERIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E+ ++ V I LRKKL A I+ GY L Sbjct: 181 YDSDSEINVVWVNISYLRKKLK-ALDANVQIKATRNVGYTL 220 >gi|188580305|ref|YP_001923750.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179343803|gb|ACB79215.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 222 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD+AL+ + L++E F + + G D L + +DA++LDLGL G Sbjct: 1 MKILLVEDDEALSAELAKALRAEGFAIDLARNGIDAGHLGETETYDAVVLDLGLPQRDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + PV IL+ DKV G ++GADDY+ KPF EELV R+RA++RR++ Sbjct: 61 SVLQDWRSAGRTVPVLILTARDGWSDKVAGFKAGADDYLVKPFRVEELVMRLRALMRRAQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + G L+ + T E G + LTG E++++ L LR+ + + + +YD Sbjct: 121 ANGAARVACGPLTFDAGLGTFEHHGLPLRLTGLEWRVLCALILRREAVVPRGQLIERVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + ++V I +LR+K++ AA IETV G GY L Sbjct: 181 GDAEVDSNSVEVIITRLRRKIAPAA-----IETVRGHGYRL 216 >gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905] gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905] Length = 247 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K +A +EL L+ E ++V V G +G+ L FD ++LD+ L I G E Sbjct: 26 KILVVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATIEAFDVLLLDVMLPGINGIE 85 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ ++ D+V GL +GADDYI KPF EEL+ARIR I+RR+ Sbjct: 86 ICRRVRTQS-QVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + D+ +++ A V VQG+++ LT EY +++LL KN T+E L + Sbjct: 145 QEPANSEFLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + E ++DV+I LR KL YIETV G GYV+RE Sbjct: 205 WGYDTDIETNVVDVYIRHLRTKLPGDTNA--YIETVRGVGYVMRE 247 >gi|58337790|ref|YP_194375.1| two-component system regulator [Lactobacillus acidophilus NCFM] gi|227904440|ref|ZP_04022245.1| two-component system regulator [Lactobacillus acidophilus ATCC 4796] gi|58255107|gb|AAV43344.1| two-component system regulator [Lactobacillus acidophilus NCFM] gi|227867815|gb|EEJ75236.1| two-component system regulator [Lactobacillus acidophilus ATCC 4796] Length = 238 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 139/237 (58%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL L+ EN+ V + G G++ +FDAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALAQDFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 63 IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ DL++ + V G I LT +EY ++ L KN +++ Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + LN ++ E +++V++ LR K+ +A G +YI+TV G GY++R+ D+ Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DAPGQPSYIKTVRGTGYMVRDEDDDQ 237 >gi|332711870|ref|ZP_08431800.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332349198|gb|EGJ28808.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 230 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 126/223 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD LA ++ L ++ + V + GE + + ++D ++LDL L + GF Sbjct: 1 MKILLVEDDILLAENLSEALTNQRYVVDLVTNGEIACQQSQMLDYDLMVLDLTLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR P+ +L+G + DKV+GL +GADDY+ KP + EL ARIRA++RR + Sbjct: 61 GVCRKLRAQGYQMPILMLTGRDTTNDKVKGLDAGADDYLVKPVDLPELFARIRALLRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ GDL ++ V IH T KEY ++E L LT+ + + H++ Sbjct: 121 SIAPPVLKWGDLRLDPSTYEVSYAHQPIHFTRKEYSLLEFLLRNGRRVLTRSVIIEHVWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + PE + ++ +I LR+KL A ++ IETV GY L++ Sbjct: 181 FENPPEEETVNAYIKSLRRKLRLAGAPRDLIETVHSVGYRLKQ 223 >gi|328544531|ref|YP_004304640.1| Response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain [polymorphum gilvum SL003B-26A1] gi|326414273|gb|ADZ71336.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Polymorphum gilvum SL003B-26A1] Length = 224 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LDLGL + G Sbjct: 1 MRLLVVEDDADLNRQLTEALTEAGYVVDRAFDGEEGHFLGDTEPYDAVVLDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ Sbjct: 61 SVLERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + I G + ++L A V V GH I LT EY+++ L K +++ HLYD Sbjct: 121 GHASNEIECGPVRLDLRAGRVTVDGHPIKLTSHEYRLLAYLMHHKGKVISRTELTEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++VF+ +LRKKL G IET+ G GY + + +D Sbjct: 181 QDFDRDSNTVEVFVGRLRKKL-----GGEPIETIRGLGYRMGDPVED 222 >gi|316934907|ref|YP_004109889.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315602621|gb|ADU45156.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 224 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G + ++ V G+ + LT EY+++ L +++ + HLYD Sbjct: 121 GHAQSELSCGPVVLDTRTGRVSANGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I+VF+ ++RKKL G + I+TV G GY+L A D Sbjct: 181 QDFDRDSNTIEVFVGRIRKKL-----GVDIIQTVRGLGYLLSPPAAD 222 >gi|254254972|ref|ZP_04948289.1| Response regulator [Burkholderia dolosa AUO158] gi|124899617|gb|EAY71460.1| Response regulator [Burkholderia dolosa AUO158] Length = 221 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 128/219 (58%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L + FD ++LD L + GF Sbjct: 1 MRILVVEDDAEIGAAIRSRLARLGHAVDLEADGATAHGLLRVERFDLVVLDANLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L+++ ++ E+ G + L+ +E+ ++E+L+ R +KE LN L+ Sbjct: 121 GHANDVLTLGGLAIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++R+KL AG I TV G GY Sbjct: 181 FGNEPTANAVEQYVTRVRRKL---AGSSVEIRTVRGMGY 216 >gi|120598570|ref|YP_963144.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|146293351|ref|YP_001183775.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|120558663|gb|ABM24590.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145565041|gb|ABP75976.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] gi|319426651|gb|ADV54725.1| two component transcriptional regulator, PhoP [Shewanella putrefaciens 200] Length = 224 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 130/219 (59%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 1 MRILVVEDDVILSHHLKVQLSDLGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A++ P+ IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 SLIQQLRDAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I +G+L ++L AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 121 GFVKPVITSGELKLDLAAKQVTLANEVMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G N I T+ G+GY Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTR-DGIDNPIVTIRGQGY 217 >gi|196233990|ref|ZP_03132826.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196221929|gb|EDY16463.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 230 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD +A + K + ++ GEDG++ + FDA ++DL L + G Sbjct: 7 MRILVVEDDSRIASFVAKGFKQNGYLAEISSDGEDGLQKLQTAPFDAAVIDLMLPKMDGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 ++ +R K + +LS S+EDKVR L+SGADDY+ KPF EL+AR+ AIVRR S Sbjct: 67 SLIERIRKGKTPVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRVS 126 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + + + ++L A + +G RI L +E+ ++ELL + LTK L L+ Sbjct: 127 REAEVERLESAGVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERLW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ ++DV +C+LR KL K I T+ G GYV R Sbjct: 187 DYSFDPQTNVVDVLVCRLRNKLDRGFDTK-LIHTLRGIGYVFR 228 >gi|115523977|ref|YP_780888.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517924|gb|ABJ05908.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 219 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD LA I L+ + V + GEDG + +DA+ILDLGL + G Sbjct: 1 MRILLIEDDSRLARQIAEALQRAGYIVDRSADGEDGWFMGDSAIYDAVILDLGLPVLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R AK S PV IL+ S +KV GL+ GADDY++KPF EEL+ARI A++RR+ Sbjct: 61 AVLRRWRAAKRSMPVLILTARGSWREKVMGLREGADDYLTKPFEMEELLARIEALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+I L ++ A+ + + LT EY+ + + ++K H+Y Sbjct: 121 GHASSVIDVAGLRLDPAAQRIVRNDEVLDLTSLEYRALSYFMMHPAKVVSKTELTEHIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ + +I+V + +LRKK+ G I T G+GY L Sbjct: 181 QDDDRDSNVIEVLVNRLRKKI-----GAELIRTRRGQGYEL 216 >gi|315634592|ref|ZP_07889876.1| two component response regulator [Aggregatibacter segnis ATCC 33393] gi|315476540|gb|EFU67288.1| two component response regulator [Aggregatibacter segnis ATCC 33393] Length = 223 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + + I++ L F V + TD G+ G+ + +DA++LDL L + G Sbjct: 1 MRILLIEDDALIGNGIQIGLTKSGFAVDWFTD-GKSGLAAAQAAPYDAVVLDLTLPKMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+A R PV IL+ ++++++ GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 60 LDVLQAWRKNGQDVPVLILTARDTLDERITGLQRGADDYLCKPFALVEVVARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GHA +I + + + + V + I LT +EY+++EL L K LT++ LY Sbjct: 120 YGHASPIIQHSCVKFDPNQRKVLLNEQEIALTTREYKLLELFMLNKERVLTRDFIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + DE ++V I LR+KL GK +I TV G GY L +N Sbjct: 180 NWDDEVNSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKN 219 >gi|251792230|ref|YP_003006952.1| transcriptional regulatory protein QseB [Aggregatibacter aphrophilus NJ8700] gi|247533619|gb|ACS96865.1| transcriptional regulatory protein QseB [Aggregatibacter aphrophilus NJ8700] Length = 223 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 132/229 (57%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + + I++ L F V + TD G+ G+E + +DA++LDL L + G Sbjct: 1 MRILLIEDDPLIGNGIQIGLTKSGFAVDWFTD-GKIGLEAAQSAPYDAVVLDLTLPKMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+A R I PV IL+ ++++++ GLQ GADDY+ KPF E+VAR+ A++RR Sbjct: 60 LDVLQAWRQKGIDVPVLILTARDTVDERITGLQRGADDYLCKPFALAEVVARLHALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GHA +I + + + V + I LT +EY+++EL L K L++ LY Sbjct: 120 YGHANPVIQHSLVRFEPNQRKVFLCDQEISLTTREYKLLELFMLNKERVLSRNFIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +E ++V I LR+KL GK +I TV G GY L +N +++ Sbjct: 180 TWDNEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKNDEED 223 >gi|163759086|ref|ZP_02166172.1| probable transcription regulator protein [Hoeflea phototrophica DFL-43] gi|162283490|gb|EDQ33775.1| probable transcription regulator protein [Hoeflea phototrophica DFL-43] Length = 228 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + L+ +++ V GE+G L +DA+ILD+GL ++ G Sbjct: 1 MRILIVEDDKDLNRQLAEALEEQSYVVDRAYDGEEGHFLGDTEPYDAVILDIGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRADGRAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S IV G + ++ A V G + LT E++++ L + +++ + H+YD Sbjct: 121 GHASSEIVCGPVRLDTAASKASVDGTTLKLTSHEFRLLSYLMHHMDQVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LRKK+ G IETV G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GVELIETVRGLGY 214 >gi|206890620|ref|YP_002248594.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742558|gb|ACI21615.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 222 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 93/223 (41%), Positives = 140/223 (62%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K+LA I+ L+ E + V V GE+G+ + + D IILD+ L + G Sbjct: 1 MRILIVEDEKSLADIIKKGLEEEGYAVDVAYDGEEGLFMAENQPSDLIILDIMLPIVDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR +R A + TPV +L+ ++ DKV GL SGADDY++KPF+ EEL+ARIRA++RR Sbjct: 61 TILRKIRKAGLKTPVLMLTAKDTVMDKVSGLDSGADDYLTKPFSFEELLARIRALLRRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S+I DL +N+ V G +I L+ KEY ++E +++ KN L++ + H+YD Sbjct: 121 DIKASIIEIDDLVINMATHEVMRGGKQISLSPKEYALLEYMAINKNKVLSRTELIEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +IDVFI +LR K+ GK I TV G GY+L+E Sbjct: 181 ENSDFDSNVIDVFINRLRNKIDREF-GKKLIHTVRGAGYILKE 222 >gi|115350078|ref|YP_771917.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115280066|gb|ABI85583.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 225 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E+F V GE + K +DA++LD+ L I G Sbjct: 1 MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + +V GDL + + L +E+ ++E L L++N T++K ++ ++ Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCGDAVLALRRREHVILETLMLQQNKTVSKARLMDSVFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 DEP ID++I +LRK L AG I T+ G GY+LR + Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AGSTTEIITLRGLGYILRAKS 222 >gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1627 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 135/231 (58%), Gaps = 6/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 M+IL++EDD+ A+++ +L ++N Y ++G DGI EL + Y++D I+LD+ L + Sbjct: 1 MKILIVEDDELNAYALTAVLTNQN---YAVEVGSDGITAWELIQTYDYDLILLDVMLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G + R +R + P+ +L+G S +K GL +GADDY+ KPF++EELVAR+RA++R Sbjct: 58 DGISLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R AQ ++ G+L ++ + V + + LT KEY ++EL + M L H Sbjct: 118 RGVTTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ D P + + I LR KL NA + +ETV+G GY L+ +++ Sbjct: 178 IWSYEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEEEQ 228 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 4/131 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD + ++ +L+ + V+ G++ I D I+LDL + + G+E Sbjct: 1379 VLVCDDDPLIRTELQSLLEQGGYRVFTVATGQEAIASASTQHPDVIVLDLLMPGMNGWET 1438 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGAD--DYISKPFNKEELVARIRAIVRRSR 120 + L+ + + + I+ + S+ Q D D++SKP + L+ +R + +S Sbjct: 1439 MAMLKESTETKHIPIV--ICSVYKPTSNHQPSRDFVDWVSKPVQESYLLHSLRQAIAKSS 1496 Query: 121 GHAQSLIVTGD 131 + LIV D Sbjct: 1497 HRVRILIVEDD 1507 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 2/113 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L ++DD + ++ +L V D E + D +ILD+ + G E Sbjct: 380 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 439 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 + + +R + P+ L+ E + GADD++SKP ELV RI Sbjct: 440 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRI 492 >gi|319898558|ref|YP_004158651.1| two-component system regulatory protein [Bartonella clarridgeiae 73] gi|319402522|emb|CBI76065.1| two-component system regulatory protein [Bartonella clarridgeiae 73] Length = 222 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 11/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MRIL++EDD+ L H + +K YV+D GEDG L +DA+ILD+GL+ + Sbjct: 1 MRILIVEDDRDLNHQLAKAVKDAG---YVSDSAFNGEDGYFLGSTEPYDAVILDIGLSRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +V+ R S P+ +L+ DKVRG+ +GADDY+ KPF+ EE++AR+RA++R Sbjct: 58 DGIQVVERWRKEGYSMPILMLTARDRWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS GHA + + G++ ++ V V G I LT E++++ L + +++ + H Sbjct: 118 RSAGHATNTLSCGEVLLDTKTSRVFVDGQLIKLTSYEFRLLAYLMHHCDKVVSRTELIEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LYD + I+VFI +LRKKL G + IETV G GY ++ Sbjct: 178 LYDQDFNKDSNTIEVFIRRLRKKL-----GVDSIETVRGLGYRIK 217 >gi|170288334|ref|YP_001738572.1| two component transcriptional regulator [Thermotoga sp. RQ2] gi|170175837|gb|ACB08889.1| two component transcriptional regulator, winged helix family [Thermotoga sp. RQ2] Length = 223 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 133/223 (59%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA I LK E F V V GE+G+ + FD +ILD+ L+ G+ Sbjct: 1 MRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLSVHDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+++R ++TPV +L+ +S +E +V+GL GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL ++ K G I LT KEYQ++E L + KN +TKE HL+ Sbjct: 121 ESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE ++ I LRKK+ K I TV G GYV R+ Sbjct: 181 FDDEVFSDVLRSHIKNLRKKVDKGF-KKKIIHTVRGIGYVARD 222 >gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394] gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180] gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005] gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429] gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270] gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750] gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes] gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394] gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180] gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005] gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2 [Streptococcus pyogenes] gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429] gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270] gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750] gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes] gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes] gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes] gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes] gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes] gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes] gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes] gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes] gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes] gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes] gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes] gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes] gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes] gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes] gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes] gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes] gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes] gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes] gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes] gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes] gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes] gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes] gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes] gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes] gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes] gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes] gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes] gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes] gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes] gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes] gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes] Length = 228 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|261342626|ref|ZP_05970484.1| QseB protein [Enterobacter cancerogenus ATCC 35316] gi|288315274|gb|EFC54212.1| QseB protein [Enterobacter cancerogenus ATCC 35316] Length = 220 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L L +E + + + L + E+ +ILDLGL D G Sbjct: 1 MKLLIVEDDLLLQEGLALALANEGYALDCAATAAEADALIQSGEYSLVILDLGLPDKDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + PV IL+ +IED++ GL SGADDY+ KPF EL AR+RA++RR + Sbjct: 61 TLLSQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ GD+++NL + V Q + +T KE+ ++ L +R T+ +E +Y Sbjct: 121 GHSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D+P ++V I LR+KL GK+ I+TV G GY L Sbjct: 181 WQDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRL 216 >gi|293607199|ref|ZP_06689540.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC 43553] gi|292814291|gb|EFF73431.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC 43553] Length = 219 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA + L+ + V V GE L FDA++LDLGL + G Sbjct: 1 MRILVVEDEPTLAAQLADALRGAGYTVDVAGDGESARFLGDVETFDAVVLDLGLPVMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A+ + PV IL+ + +KV G+ +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 TVLKLWRAAQRNMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G L ++ V + G + LT E++++ +L R +++ ++H+Y Sbjct: 121 AHASAQWRCGPLMLDTRQARVTIDGQALSLTSHEFKVLSVLMQRAGEVVSRTELIDHVYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDVFI +LRKKL IETV G GY L Sbjct: 181 QDFDRDSNTIDVFIARLRKKLP-----PGTIETVRGLGYRL 216 >gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 228 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 93/228 (40%), Positives = 137/228 (60%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K+LA ++L L+ E + V V G G+E +FDAI+LDL L +I G E Sbjct: 3 RILIIEDEKSLARFVQLELQHEGYEVEVQSNGRTGLEAALSEDFDAILLDLMLPEINGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R KI TP+ +++ SI D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 VCRRIRREKI-TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVDL 121 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S H Q+ + D+ + + + V I+LT +EY+++ LL N ++E Sbjct: 122 ETQDSTFH-QTTVEFQDIVIEKENRVVRRNNEVINLTKREYELLLLLMENINVVQSRETL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN ++ D E ++DV+I LR K+ + G +YI+TV G GYV+R Sbjct: 181 LNKVWGVDDGVETNVVDVYIRYLRNKI-DVKGRPSYIQTVRGTGYVMR 227 >gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 225 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 131/224 (58%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A+ + L E F V V G G+E + D ++LDL L I G E Sbjct: 4 RILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLEFAREAAHDLVVLDLMLPGIDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A P+ IL+ S+ D+V GL++GADDY+ KPF EL+ARIR +RR + Sbjct: 64 VARRLRAAS-DVPIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQLRRRQS 122 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS I+ +L+++ A+ + + RI LT KEY +++L N LT+E+ + ++ Sbjct: 123 AQQSDILRFANLTLDTAARELRIGDRRIDLTAKEYDLLDLFMRHPNQVLTREVIYDRVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E II+V++ LR+KL A GG I+TV G GY+LRE+ Sbjct: 183 YDFGGESNIIEVYVRYLRQKL-EAGGGSRVIQTVRGAGYILRED 225 >gi|90419141|ref|ZP_01227052.1| DNA-binding two-compenent response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90337221|gb|EAS50926.1| DNA-binding two-compenent response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 224 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 130/225 (57%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILVVEDDQTLNRQLVEALNGAGYVVDKAMDGEEGHFLGDTEPYDAVVLDVGLPLMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVLERWRRDGRTMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G L ++ A V + G + LT EY++++ L ++ +++ + HLYD Sbjct: 121 GHASSEIHCGPLRLDTRAARVTLDGTALKLTSHEYRLLDYLMHHQDQIVSRTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LRKKL GG IETV G+GY + + Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL----GGAELIETVRGQGYRMHDGG 221 >gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 1629 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 137/236 (58%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 M+IL++EDD+ A+++ +L ++N Y ++G DGI EL + Y++D I+LD+ L + Sbjct: 1 MKILIVEDDELNAYALTAVLTNQN---YAVEVGSDGITAWELIQTYDYDLILLDVILPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G + R +R + P+ +L+G S +K GL +GADDY+ KPF++EELVAR+RA++R Sbjct: 58 DGISLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R AQ ++ G+L ++ + V + + LT KEY ++EL + M L H Sbjct: 118 RGGTTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-----ENAKDE 228 ++ D P + + I LR KL NA + +ETV+G GY L+ + +KDE Sbjct: 178 IWSYEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEEEQGSKDE 233 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 4/131 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD + ++ +L+ + V G++ I D I+LDL + + G+E Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGAD--DYISKPFNKEELVARIRAIVRRSR 120 + L+ + + + I+ + S+ Q +D D+ISKP + L+ +R + +S Sbjct: 1441 MAMLKESTETKHIPIV--ICSVYKPTTNNQPSSDFVDWISKPVQESYLLHSLRQAIAKSS 1498 Query: 121 GHAQSLIVTGD 131 + LIV D Sbjct: 1499 RRVRILIVEDD 1509 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 2/113 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L ++DD + ++ +L V D E + D +ILD+ + G E Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 + + +R + P+ L+ E + GADD++SKP ELV RI Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRI 494 >gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC 6506] gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC 6506] Length = 413 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 124/228 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD+ +AH++ L +++ V V G+ G E + + +D I+LD+ L + G Sbjct: 1 MKVLLVEDDEYIAHALSTTLTEQHYTVDVAYDGQAGWEYAEAFTYDLILLDVVLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR +TP+ +L+ S K+ GL +GADDY+ KPF+ EL ARIRAI+RR Sbjct: 61 SLCRQLRSRHTTTPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAILRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ TG L +N + V ++LT KEY ++EL ++ L+HL+ Sbjct: 121 AALPPILETGKLRLNPNNYEVIYNSQPLNLTPKEYALLELFLRNTQRVFSRRAILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + P + I LR KL A + +ETV+G GY L+ + E Sbjct: 181 FEEPPAEDTVRAHIKGLRSKLKAAGAPPDLVETVYGLGYRLKPEKRQE 228 >gi|190890997|ref|YP_001977539.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190696276|gb|ACE90361.1| two-component response regulator protein [Rhizobium etli CIAT 652] Length = 223 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 126/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A + PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S IV G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHASSEIVCGPVRLDTKSSKATVNGTALKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LRKK+ G + IETV G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214 >gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41] gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41] Length = 247 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+K +A +EL L+ E ++V V G +G+ L FD ++LD+ L I G E Sbjct: 26 KILLVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATTDAFDVLLLDVMLPGINGIE 85 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +++ ++ D+V GL +GADDYI KPF EEL+ARIR I+RR+ Sbjct: 86 ICRRIRTQS-QVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + D+ +++ A V VQG+++ LT EY +++LL KN T+E L + Sbjct: 145 QEPANSECLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + E ++DV+I LR KL YIETV G GYV+RE Sbjct: 205 WGYDTDIETNVVDVYIRHLRSKLPGDTNA--YIETVRGVGYVMRE 247 >gi|83309288|ref|YP_419552.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82944129|dbj|BAE48993.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 223 Score = 148 bits (373), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 126/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L ++E L++ F V GEDG L +DA+ILDLGL I G Sbjct: 1 MRVLVVEDEPQLTLALERALEAAGFAVDTAYDGEDGWHLGDTESYDAVILDLGLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A + PV +L+ + +K + +GADDY++KPF EE+V R+RA++RR+ Sbjct: 61 SVLGRWREAGRAMPVMVLTARARWAEKSQAFNAGADDYVTKPFEMEEVVTRVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA I G L ++ V G I LT +E++++ L+ + +++ + H+YD Sbjct: 121 GHASPEITCGPLRIDTVGGRVSRAGLPIALTAQEFRILSYLAHHQGRVVSRSELVEHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P+ ++DV + ++R+KL G + I T+ G+G+ Sbjct: 181 RDADPDSNVLDVLVARIRRKL-----GVDVIHTLRGQGW 214 >gi|87118795|ref|ZP_01074694.1| two-component system, regulatory protein [Marinomonas sp. MED121] gi|86166429|gb|EAQ67695.1| two-component system, regulatory protein [Marinomonas sp. MED121] Length = 223 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 134/223 (60%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L +I + + V + G D ++ + E+D ++LDL L + G Sbjct: 1 MRILVVEDDDVLGEAISQRMLKQGHGVDLATSGADANDILRHQEYDLVVLDLNLPGMNGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LRV + +TPV IL+ + +ED+++ L GADDY++KPF+ E AR RA++RR + Sbjct: 61 QVLNKLRVRQTNTPVLILTARNQVEDRIQLLDLGADDYLTKPFDFGEFDARCRALLRRHQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ++I G+LS++ A V V + L +E++++E+ L+K+ ++HLY+ Sbjct: 121 GQAQNVISYGNLSLDRKACCVYVDQVLVDLKQREFRLLEIFITHTGWVLSKDDLIDHLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + P I++++ +LRKKL +A I T+ G GY+L E Sbjct: 181 FDEPPSPNAIELYVARLRKKLQTSAVE---IRTLRGLGYILEE 220 >gi|307544165|ref|YP_003896644.1| response regulator OmpR [Halomonas elongata DSM 2581] gi|307216189|emb|CBV41459.1| K02483 two-component system, OmpR family, response regulator [Halomonas elongata DSM 2581] Length = 220 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L I L+ E + V + G DGI + +F A+ILDLGL DI G Sbjct: 1 MRVLLVEDDPLLGDGIRTALQREGYAVDWLETGRDGIAAIRHDDFSAVILDLGLPDIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R A S PV IL+ ++E ++ GL GADDY+ KPF+ +EL+AR+R I+RR+ Sbjct: 61 EVLDKIRHAG-SLPVLILTARDAVESRISGLDGGADDYVLKPFDLQELLARLRVIMRRAE 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + L+ G+L ++ V QG+ I LT +EY ++ L+ +T+ + LY Sbjct: 120 GRSSRLLEVGELCIDEARHRVSWQGNDISLTRREYALLLELARHPGRVMTRPHLEDLLYG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE ++V + LRKKL ++ I TV G GY L Sbjct: 180 WEDEVASNAVEVHVHHLRKKLD-----RHLIATVRGVGYRL 215 >gi|146281237|ref|YP_001171390.1| two-component response regulator [Pseudomonas stutzeri A1501] gi|145569442|gb|ABP78548.1| probable two-component response regulator [Pseudomonas stutzeri A1501] gi|327479394|gb|AEA82704.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 221 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 127/221 (57%), Gaps = 8/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+ED+ LA + L + + ++TD G D +D IILDLGL PG Sbjct: 1 MRLLLVEDNVPLADELVASLSRQGYATDWLTD-GRDAEYQGATEPYDLIILDLGLPGKPG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL A R A ++TPV IL+ S +++ GL++GADDY++KPF+ EEL+ RI+A++RR+ Sbjct: 60 LEVLHAWRAAGVTTPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELLLRIQALLRRA 119 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G A Q ++ G L ++ + G I LT E++++ L L+K HL Sbjct: 120 HGLANQPMLQAGGLELDESRQCCRKDGQDIELTAGEFRLLRYFMLHPGQLLSKTQLTEHL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 YDG E + +I+V + +LR KL G+ IET G+GY Sbjct: 180 YDGETERDSNVIEVHVNRLRGKL-----GRELIETRRGQGY 215 >gi|37679606|ref|NP_934215.1| DNA-binding response regulator [Vibrio vulnificus YJ016] gi|37198350|dbj|BAC94186.1| DNA-binding response regulator [Vibrio vulnificus YJ016] Length = 219 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L I ++S +V +L +DGI+ E+DA++LDLGL + Sbjct: 1 MKILVVEDDPRLGEQI---IESLEKTGWVPELSQDGIDALYRATSEEWDAMVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ V QG + LT EY+++ + +++ + H Sbjct: 118 RASGNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFVHNADKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y + + I+VFI ++RKK++ N I+TV G GY L N Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PNIIKTVRGLGYQLNAN 219 >gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 235 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ A + L + V + G D + +DAI+LDL L + GF Sbjct: 1 MRVLVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQAGEISYDAIVLDLMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A+ +P+ +L+ ++D++ GL +GADDY++KPF+ EL AR+RA++RR Sbjct: 61 EVCRRLRAARRWSPILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GD+ ++ A++V+ G + L+ KE+ ++ELL R LT+ L+H++D Sbjct: 121 VERPATLRVGDIHLDPAARSVQRAGEPVDLSAKEFSLLELLMRRPGEVLTRSYILDHMWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ LR+K+ + A G + IETV G GY LR Sbjct: 181 LGYDGTSNVVDQYVRYLRRKI-DPADGLSRIETVRGAGYRLR 221 >gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 132/221 (59%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA + L +E + V V + G G + + +D IILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLADVVAAGLTAEGYGVDVANDGTTGFSMARQNPYDVIILDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR A++ TP+ +L+ D+ GL GADDY++KPF+ L ARIRA++RRS Sbjct: 61 QVCRKLREAEVRTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ GDL ++ AKTV I LT KE+ ++E L+ R ++K L H++D Sbjct: 121 STAPTVWEFGDLVIDPAAKTVRRGEADISLTAKEFAVLEYLASRAGEVVSKTEVLEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +V I++V+I LR+KL +A G+ I T+ G GY L Sbjct: 181 FAYDGDVNIVEVYISYLRRKL-DAPFGRQAITTLRGAGYRL 220 >gi|196232874|ref|ZP_03131724.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196223073|gb|EDY17593.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 217 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED L S+ L+ + V + GE G+ L + +DA++LD+ L + G Sbjct: 1 MRVLLVEDSPRLQRSLGAALRKSGYAVDIAGDGEQGLWLAETNSYDAVVLDIMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR T + +L+ +++D+VRGL GADDY+ KPF EEL+AR+ A+ RR+ Sbjct: 61 SVVRQLRAKGRDTHILLLTAKDTVDDRVRGLADGADDYLVKPFALEELLARVHALCRRTY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I L +N +KTV+ H + L +EY+++E L+ R +T+ H+YD Sbjct: 121 GGKSTSICVAGLELNTSSKTVKRGEHIVDLLPREYRLLEYLAARTGQVVTRTEIETHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 P ++D IC LRKK+ N I T G GY+ Sbjct: 181 DLATPMSNVVDSAICALRKKIGN-----ERIRTRRGLGYIF 216 >gi|238797563|ref|ZP_04641060.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii ATCC 43969] gi|238718560|gb|EEQ10379.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii ATCC 43969] Length = 220 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ L I + L +E + T + L + ++ +ILDLGL D G Sbjct: 1 MKLLIVEDDELLQRGIAMALTNEGYACDCTGTAAEAQSLLQSSQYSMVILDLGLPDQDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R ++ PV IL+ ++ED+V GL +GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 VLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L+ DLS+NL + V +Q + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LR+KL GK+ I TV G GY L Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRL 216 >gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|262275301|ref|ZP_06053111.1| probable two-component response regulator protein [Grimontia hollisae CIP 101886] gi|262220546|gb|EEY71861.1| probable two-component response regulator protein [Grimontia hollisae CIP 101886] Length = 231 Score = 148 bits (373), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 130/228 (57%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +L+ +E L+ V VTD G+ + LC +D I+D L + G Sbjct: 1 MRVLLVEDDVSLSSFVEKGLREAGHQVEVTDNGKHALTLCMAENYDVAIVDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +++ALR A++ TP+ L+ + ++D+V GL++G DDY++KPF EL+AR+ A+ RR+ Sbjct: 61 SLVKALRAAQVGTPILFLTALGGVDDRVEGLEAGGDDYLTKPFAFSELLARVTALSRRAV 120 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A I GD+ +NL + +G + L KE++++EL +T+ M L H Sbjct: 121 LKTTEAMPEISYGDVVLNLFEHSATRRGQPLDLQPKEFRILELFLRHPGRVITRTMLLEH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D +P+ +++ I +LR KL G I+TV G GY L + + Sbjct: 181 VWDIHFDPQTSVVETHISRLRNKLEKPF-GDTLIQTVRGVGYKLEQKS 227 >gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614] gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614] Length = 236 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ +A I + L+ E + V G + K + DA++LD+ L D G Sbjct: 11 LRVLVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIMLPDFDGL 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVLR +R S PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR+ Sbjct: 71 EVLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAG 130 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + A S +V GDL ++ D++ V G + LT E++++ L L+K L+ Sbjct: 131 AQQATASSTLVVGDLELDEDSREVFRAGREVTLTATEFELLRFLMRNPRRVLSKAQILDR 190 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ AG + I T+ G GYVL+ Sbjct: 191 VWNYDFGGQANVVELYISYLRKKID--AGHEPMIHTMRGAGYVLK 233 >gi|325523766|gb|EGD02019.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 127/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + ++ L V + G L + FD ++LD+ L + GF Sbjct: 1 MRILVVEDDAEIGAAVRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + +TPV +L+ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 AVLRNLRASGSTTPVLLLTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L ++ ++ E+ G + L+ +E+ ++E+L+ R +KE LN L+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++R+KLS G I T G GY Sbjct: 181 FGNEPTANAVEQYVTRVRRKLS---GSSVEIRTARGMGY 216 >gi|114328319|ref|YP_745476.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] gi|114316493|gb|ABI62553.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] Length = 237 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 1/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IEDD+ + S++ L + N++ + G G+E FD +I+D L ++ G Sbjct: 7 RVLVIEDDEEVGPSLQSNLLARNYDTQLAITGTQGLEAATKSGFDVMIVDRMLPELDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR I TP +LS + +++D++ GL++G DDY+ KPF+ EELVARI A+VRR Sbjct: 67 LIGRLREQNIQTPALVLSALGAVDDRIEGLRAGGDDYLVKPFSLEELVARIEALVRRPVS 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + G L ++L +T+ + + L E +++E + R + +T+ M L ++ Sbjct: 127 QASLQLRAGPLRLDLLNRTLSCEDKTVDLLAMELKLLEYMMRRPDQVVTRAMLLEDIWRY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 R PE ++DV + KLR+KL+ AGG I TV G G++LR A+ Sbjct: 187 RFLPETNLVDVHMGKLRRKLAE-AGGDGLIHTVRGAGFMLRIPAE 230 >gi|312960053|ref|ZP_07774566.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311285710|gb|EFQ64278.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 222 Score = 148 bits (373), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA + L+ + + V G D + +D IILDLGL +PG Sbjct: 1 MRLLLVEDNVPLADELLAGLQRQGYAVDWLADGRDAAYQGRSEPYDLIILDLGLPGLPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R A + TPV IL+ S +++ GL++GADDY+SKPF+ EEL RI+A++RRS Sbjct: 61 EVLAQWRAAALVTPVLILTARDSWAERIEGLKAGADDYLSKPFHPEELHLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + L ++ + V G I LT E++++ L L+K HLY Sbjct: 121 GQANQPTLQAAGLHLDEGRQCVLRDGEEIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG E + +++V + LR+KL G++ IET G+GY Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGY 215 >gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 147 bits (372), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|239995786|ref|ZP_04716310.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Alteromonas macleodii ATCC 27126] Length = 226 Score = 147 bits (372), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 128/220 (58%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD +A I L E G G + E DA+ILD+ L ++ GF Sbjct: 1 MKVLLVEDDPKVASHIANGLLGEGHECITVGDGTSGYQQASSNELDAVILDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR +TPV +LS S +EDKV+GL++GA+DY++KPF EEL+AR+ + R++ Sbjct: 61 SVLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNK 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++LI GDL+++L + V I L KE+Q++E L K +T+ M L ++ Sbjct: 121 EGEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +P+ +IDV I +LR+K+ A IETV G GY Sbjct: 181 NYHFDPQTNVIDVHISRLRQKVDKAF-NVPLIETVRGTGY 219 >gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 225 Score = 147 bits (372), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 127/224 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ LL+EDD+ +A S+ L N+ + V GE+G + +++D I+LD+ L + G Sbjct: 1 MKFLLVEDDERIAASLTEALTDNNYAIDVAGDGEEGWDFITAFDYDLILLDVMLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR PV +L+ S DKV GL +GADDY+ KPF+ +EL+ARIRA++RR Sbjct: 61 ELCQRLRQRGYGLPVLMLTARDSSTDKVLGLDAGADDYVIKPFDLKELLARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G L ++ TV + + +T KEYQ++EL L++ L+HL+ Sbjct: 121 TTISTFLEWGGLRLDPANCTVTYKEQLLLMTPKEYQLLELFLRNNGYVLSRRQILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + V I +R+KL A ++IETV+G GY L +N Sbjct: 181 SIDPPGQDTVKVHIRGIRQKLKAAGAKDDFIETVYGLGYRLNQN 224 >gi|260550899|ref|ZP_05825105.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260406026|gb|EEW99512.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] Length = 220 Score = 147 bits (372), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 130/219 (59%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD++ A SI+ L+ + + V + G+ + + +++D I+LD GL + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + + PV ++ SI D+V GL GA+DY+ KPF+ EEL ARIRA +R Sbjct: 61 KVLTTIRYKQKNVPVIFITARDSIHDRVEGLDLGANDYLIKPFSLEELSARIRAQLRNQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS+++ GDL ++ AK V + G+ I LT KE+Q++ L + +T++ LY Sbjct: 121 LSQQSILIWGDLHLDTQAKVVSLAGNPIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DE E I+VFI +LRKK+ G + I+T+ G GY Sbjct: 181 WGDEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214 >gi|163842879|ref|YP_001627283.1| two component transcriptional regulator [Brucella suis ATCC 23445] gi|163673602|gb|ABY37713.1| two component transcriptional regulator, winged helix family [Brucella suis ATCC 23445] Length = 229 Score = 147 bits (372), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 130/229 (56%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIIEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTELYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ G + IETV GRGY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGRGYRMRSGGEGEA 224 >gi|118587742|ref|ZP_01545152.1| probable transcription regulator protein [Stappia aggregata IAM 12614] gi|118439364|gb|EAV45995.1| probable transcription regulator protein [Stappia aggregata IAM 12614] Length = 237 Score = 147 bits (372), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + L+ + V GEDG L +DA++LDLGL + G Sbjct: 16 MRILVVEDDTDLNRQLVAALEEAGYVVDSATDGEDGHFLGDTEPYDAVVLDLGLPSLDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ Sbjct: 76 SVLENWRRDGRTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 135 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G + ++L + V V G + LT EY+++ L + +++ HLYD Sbjct: 136 GHASNELTCGAVRLDLRSGRVTVDGSAVKLTSHEYRLLSYLLHHQGKVISRTELTEHLYD 195 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++VF+ +LRKK+ G + IET+ G GY L Sbjct: 196 QDFDRDSNTVEVFVGRLRKKI-----GSDMIETIRGLGYRL 231 >gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 224 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 127/223 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A+ + L + + V + GE G E + + +D I+LD+ L + G Sbjct: 1 MRILLVEDDERIANVLAASLTEQRYTVDMAGDGEKGWEFIEAFSYDLILLDVMLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + S PV +L+ + EDKV GL GADDY+ KPF+ EL+ARIRA++RR Sbjct: 61 GLCQRIRQSGCSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L ++ + V +HLT KEY ++EL +N L++ L++L+ Sbjct: 121 VAPNPILEWQQLRLDPSSYEVTYSDQILHLTPKEYGLLELFLRNENLVLSRSAILDNLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D P + + V I LRKKL ++IETV+G GY L++ Sbjct: 181 FEDPPSEEAVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRLKQ 223 >gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096] gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096] Length = 228 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETHVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|86750565|ref|YP_487061.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573593|gb|ABD08150.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 257 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 29 VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 88 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 89 SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 148 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G + ++ V V+GH + LT EY+++ L +++ + HLYD Sbjct: 149 GHAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 208 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I+VF+ ++RKKL + I+TV G GY+L D Sbjct: 209 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLLTPPPAD 250 >gi|209885699|ref|YP_002289556.1| transcriptional regulatory protein QseB [Oligotropha carboxidovorans OM5] gi|209873895|gb|ACI93691.1| transcriptional regulatory protein QseB [Oligotropha carboxidovorans OM5] Length = 224 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 131/229 (57%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL + R K PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLESWRRNKRIMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GHAQS + G SV LD +T V V G+ I +T EY+++ L +++ + HL Sbjct: 121 GHAQSELTCG--SVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHL 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 YD + + I+VF+ ++RKKL G I+TV G GY+L + D Sbjct: 179 YDQDFDRDSNTIEVFVGRIRKKL-----GVEIIQTVRGLGYLLAPPSPD 222 >gi|152998159|ref|YP_001342994.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839083|gb|ABR73059.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 223 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 134/224 (59%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L +I + + + G ++ E+D ++LDL L D+ G Sbjct: 1 MRILVVEDDRILGEAISQRISRMGHGLDLAQTGLQANQMLALQEYDLMLLDLNLPDMTGN 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR +TPV +L+ I+D++ L GADDY++KP + EL AR RA++RRS+ Sbjct: 61 QILQTLRKKHSNTPVIVLTARDGIKDRIELLDLGADDYMTKPVDFGELEARCRALLRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+ I G++S+NL A +V V G+ I L +E++++E+ L+KE + H+Y+ Sbjct: 121 GQAQNTIEYGNVSLNLQACSVTVDGNLIDLKQREFRLLEVFISHTGRVLSKEALIEHIYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + P +I++++ +LRK L ++ I T+ G GY+L ++ Sbjct: 181 FNENPNSSVIEIYVARLRKSLQDSDIN---IRTIRGLGYLLEKH 221 >gi|157961570|ref|YP_001501604.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846570|gb|ABV87069.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 224 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 1 MRILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++LR + PV IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 SLIQSLRDEGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I +G L ++L AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 121 GFVKPQITSGALELDLAAKQVSLNEQPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G +N I T+ G+GY Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-GGIENPIVTIRGQGY 217 >gi|290352167|dbj|BAI78794.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMYGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Fulvimarina pelagi HTCC2506] gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Fulvimarina pelagi HTCC2506] Length = 219 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 131/222 (59%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L++ + V GE+G L +DAI+LD+GL + G Sbjct: 1 MRVLVVEDDDNLRRQLREALEAGGYVVDEAADGEEGHFLGDTEPYDAIVLDVGLPVMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVLERWRRDQKKVPVLILTARDRWSDKVAGIDAGADDYVTKPFHIEEVLARVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G L ++ V V G + LT EY++++ L +++ +++ + HLYD Sbjct: 121 GHATSELECGPLRLDTRTARVSVDGTPLKLTSHEYRLLDYLMHHQDSVVSRSELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+VF+ +LRKK+ G + IET+ G+GY LR Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GIDLIETIRGQGYRLR 217 >gi|297563709|ref|YP_003682683.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848157|gb|ADH70177.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A + L + F V G + ++ FD ++LDLGL D GF+ Sbjct: 3 RILIVEDEERIASFVRKGLDASGFTTTVVGTGAEAVDYAVTGGFDLMLLDLGLPDTDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + PV IL+ + D V GL+ GADDY++KPF EEL+AR+R +R R Sbjct: 63 VLRRVRSLGVDIPVVILTARDGVRDTVTGLEIGADDYVTKPFRFEELLARVRLRMRNERP 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ G L+++L + V V+G + LT +E+ ++ELL LT++ L+H++ Sbjct: 123 TELTVLRAGGLALDLRTRRVAVEGTSVDLTAREFSLLELLMRHPGQVLTRQQMLSHVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DVF+ LR+K+ G I TV G GY L Sbjct: 183 DYDPGSNVVDVFVRALRRKV-----GAERIVTVRGMGYRL 217 >gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E +FD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLKLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S V DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 220 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G + I V G GY++ + A Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GADLIRNVRGLGYMIAKEA 220 >gi|78062614|ref|YP_372522.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77970499|gb|ABB11878.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 226 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 129/231 (55%), Gaps = 5/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G LS + ++ + G + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + I++++ +LRKKL N I T+ G GY+L AK ET E Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGIA---IVTLRGLGYLL--EAKAETAE 226 >gi|295677563|ref|YP_003606087.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295437406|gb|ADG16576.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 220 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D +LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALHAAAAQPYDLALLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRALR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 EVLRALRARGNALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G + I V G GY++ ++A Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GADLIRNVRGLGYMIAKDA 220 >gi|153010000|ref|YP_001371215.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561888|gb|ABS15386.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 230 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 132/230 (57%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMAAAGYVVDRAYDGEEGHYLGDTEPYDAVVLDIGLPRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S +V G L ++ V G + LT EY+++ L + +++ + HLYD Sbjct: 121 GHASSELVCGPLYLDTKTSKASVNGVALKLTSHEYRLLSYLMHHMDEVVSRTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDET 229 + + I+VF+ +LRKK+ G + IETV G GY +R E DET Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRIRSEEGGDET 225 >gi|212635060|ref|YP_002311585.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212556544|gb|ACJ28998.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 224 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 1 MRILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++LR + PV IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 SLIQSLRDNGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I +G L ++L AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 121 GFVKPKITSGALEIDLAAKQVSMNEEPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G +N I T+ G+GY Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-DGLENPIATIRGQGY 217 >gi|197336075|ref|YP_002155282.1| transcriptional regulatory protein PhoP [Vibrio fischeri MJ11] gi|197317565|gb|ACH67012.1| transcriptional regulatory protein PhoP [Vibrio fischeri MJ11] Length = 226 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 131/227 (57%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+I L+ED++ L H + LK + VY ++ + E D +I+DLGL D G Sbjct: 1 MQIALVEDNEILNHHLSSQLKDQGHVVYSDKTASAFLQTVQKKEHIDVMIVDLGLPDFDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ +R +I++P+ IL+ + +DKV GL++GADDY+ KPF EEL+AR+ A+ RR+ Sbjct: 61 ITLIKQIRRKEINSPILILTARGNWQDKVEGLEAGADDYLVKPFQSEELIARLYALARRA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G QS + ++ +++ AKT+ V G + LT EY + L ++K+ F++ LY Sbjct: 121 AGFTQSKVTAENIELDIKAKTIHVDGQFLQLTSFEYDIAAYLIKNSLKIISKQQFVDALY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E ++ I+V I +LRKK + A G I TV G+GY + AK Sbjct: 181 QEDSEVQLNNIEVIISRLRKKFA-AVGHSELITTVRGQGYQFQIKAK 226 >gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 220 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAAGSQPYDLVLLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G I V G GY++ ++A Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GAELIRNVRGLGYMIAKDA 220 >gi|218659866|ref|ZP_03515796.1| two-component response regulator protein [Rhizobium etli IE4771] Length = 223 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 126/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I+ G + +++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHASSEIICGPVRLDIKSSKATVNGTALKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LRKK+ G + IETV G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214 >gi|217973027|ref|YP_002357778.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304409091|ref|ZP_07390712.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307303094|ref|ZP_07582849.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|217498162|gb|ACK46355.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304352912|gb|EFM17309.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306913454|gb|EFN43876.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315267915|gb|ADT94768.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 224 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 1 MRILVVEDDPILSHHLKVQLSDLGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR A + P+ IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 SLIEQLREAGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I +G+L ++L AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 121 GFVKPVICSGELKLDLAAKQVTLSDEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G N I T+ G+GY Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTR-DGIDNPIVTIRGQGY 217 >gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E +FD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S V DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|15602079|ref|NP_245151.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70] gi|12720438|gb|AAK02298.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70] Length = 223 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G+ G+E K +DA++LDL L + G Sbjct: 1 MRILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R K PV IL+ +++++V GLQ GADDY+ KPF E++AR++A++RR Sbjct: 61 DILQRWRKEKYDVPVLILTARDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I + + + + V ++ + LT +EY+++EL L K+ L++ M LY+ Sbjct: 121 GQASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLELFMLNKDRVLSRRMIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DE ++V I LR+KL GK +I TV G GY L +N Sbjct: 181 WDDEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKN 219 >gi|182413226|ref|YP_001818292.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177840440|gb|ACB74692.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 265 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + +E L +N+ + + ++ FDA++LDLGL D G Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R + + PV +LS ++ D+VRGL GADDY+ KPF+ +E+VAR+R+++RR Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G + ++L ++V G + LT +EY ++EL LT+ + +++ Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E +IDV++ +LR+KL A G I+T+ G GY L Sbjct: 225 ASYDLETNLIDVYVRRLRQKL-EAPGQPPLIKTIRGTGYQL 264 >gi|94311948|ref|YP_585158.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93355800|gb|ABF09889.1| Two component heavy metal response transcriptional DNA binding regulator, winged helix family precursor [Cupriavidus metallidurans CH34] Length = 221 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED + LA ++ L+SE Y D DG+ KF Y +DAIILDL L + Sbjct: 1 MRVLIVEDSQTLAEALSQSLQSEG---YACDTAADGVSALKFLASYRYDAIILDLMLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VLRAL + PV +LS ++D+VR L +GADDY++KPF EL+AR+RA+VR Sbjct: 58 DGFGVLRALGREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ GDL V+ ++ + + LT KEY +++LL R+ TL++ H Sbjct: 118 RPPQRDVPVLRHGDLEVDPRSRIARFKCIDLGLTPKEYGLLDLLLRRRGATLSRSQIFEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LYD R + K+++V + LR KL+ G I T G GY+L Sbjct: 178 LYDSRSDASDKVVEVIVSTLRTKLAQ-CGLDELIVTRRGFGYIL 220 >gi|296104894|ref|YP_003615040.1| DNA-binding transcriptional regulator BasR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059353|gb|ADF64091.1| DNA-binding transcriptional regulator BasR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 220 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L L +E + + + L + E+ +ILDLGL D G Sbjct: 1 MKLLIVEDDLLLQEGLALALSNEGYALDCAATAAEADALIQSGEYSLVILDLGLPDKDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + PV IL+ +IED++ GL SGADDY+ KPF EL AR+RA++RR + Sbjct: 61 TLLSQWRRRGVDNPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ GD+++NL + V Q + +T KE+ ++ L +R T+ +E +Y Sbjct: 121 GHSDNLLTDGDITLNLQTQQVLCQSLPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D+P ++V I LR+KL GK+ I+TV G GY L Sbjct: 181 WQDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRL 216 >gi|161075795|gb|ABX56645.1| DNA binding copper response regulator [Methylacidiphilum infernorum V4] Length = 223 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 126/219 (57%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +A I L+ E F V G++ + + +DA +LD+ L G Sbjct: 1 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR+LR IS P+ +LS S DK+ GL SGADDY+ KPF+ +ELVAR+RA++RR+ Sbjct: 61 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S+ G+L++NL + V +I LT KE+ ++ELL T+ +++ Sbjct: 121 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P ++DV+I KLRKK+ K I+TV G GY Sbjct: 181 YHFDPGTNLVDVYIQKLRKKIDEGEEQK-LIQTVRGVGY 218 >gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 135/227 (59%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD+ + + L E ++VY G +G+ + + D IILD+ + + GFEV Sbjct: 5 ILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSADPDLIILDVMMPKVDGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R LR + PV +L+ +E++V+GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 65 CRRLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRRKDSG 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 SR +Q LI D+ ++LD++ V G R+ LT KE++++ L LT+++ ++ + Sbjct: 125 SRSGSQRLIFE-DIIMDLDSREVTRAGQRLELTAKEFELLHLFMQNPKRLLTRDLIMDKI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E +++V+I LR+K + GGK I+T+ G GY+LR A Sbjct: 184 WGYDYSGESNVLEVYIAMLRQK-TEEHGGKRVIQTIRGAGYILRGEA 229 >gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a] gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a] Length = 228 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K L+ +EL L+ E + V G G+EL ++DAI+LDL L ++ G E Sbjct: 3 RILIIEDEKNLSRFVELELQHEGYETEVCKNGRQGLELALDEDWDAILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 VCRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVEL 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+ Q+ + DL++ + + V I LT +EY+++ L N L ++ L Sbjct: 122 ENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDTLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + E ++DV+I LR K+ + G +YI+TV G GYV+R Sbjct: 182 KKVWGYETQIETNVVDVYIRYLRNKI-DRPGEDSYIQTVRGTGYVMR 227 >gi|171740938|gb|ACB54965.1| PhoP [Pseudomonas fluorescens] Length = 225 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H ++ L V E+ + + + D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLQTRLSDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLPGISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS IV G L ++L+ K + + LT EY+++E L + K+ + LY Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGDEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DE + +I+V + +LR+KL AG K I+TV G GY+ E + Sbjct: 181 DDDERDPNVIEVLVGRLRRKLEAPAGFKP-IDTVRGLGYLFNERCQ 225 >gi|94497683|ref|ZP_01304251.1| DNA-binding response regulator [Sphingomonas sp. SKA58] gi|94422900|gb|EAT07933.1| DNA-binding response regulator [Sphingomonas sp. SKA58] Length = 236 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 127/220 (57%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD+A +I +L + V T G G+ D +ILD L + G ++ Sbjct: 9 VLLVEDDEAARTTIAAILTAAGMTVEQTADGPTGLNRAGSGGHDVVILDRMLPHLSGIDI 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 + +R+A I PV +LS + E +V GL+SG DDY++KPF +ELVAR+RA+ RR SR Sbjct: 69 VTRMRLAGIGAPVLMLSALGRSEHRVEGLESGVDDYLAKPFEPDELVARVRALWRRASRR 128 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +S+++ GDL ++ A+T QG + L+ KE+++ L +T+EM L H++ Sbjct: 129 SHESVLLFGDLECHVKARTAFRQGRHLPLSPKEFELFRYLMDHAGEVVTREMLLRHVWKL 188 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P+ ++DV + +LR+KL +ETVWG GY L Sbjct: 189 SFDPQTNVVDVNVGRLRRKLEEGF-DTPVLETVWGTGYRL 227 >gi|296111541|ref|YP_003621923.1| two-component system regulator [Leuconostoc kimchii IMSNU 11154] gi|295833073|gb|ADG40954.1| two-component system regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 141/225 (62%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIEDD LA +I L+ + +V V D G DG + +D II DL L GF Sbjct: 5 IKILLIEDDVNLADNIVGFLQ-DFADVNVVDNGLDGEFEGQESPYDLIISDLMLPGENGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR I TPV IL+ SS++DK+ G GADDY++KPF +EEL+ R++A++RR+ Sbjct: 64 EVIKYLRKNDIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRAG 123 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ ++I GD+ +NL+ + V+V G ++ L GKE+ ++ L+ KN +T++ + ++ Sbjct: 124 VYSEDNMIAVGDVMINLENRGVQVHGQQVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++++++ LR+KL A G + I+T+ G++L N Sbjct: 184 GIDSDTTINVVNIYLNNLRRKLE-AVGQNDLIKTLRNIGFILEVN 227 >gi|259500533|ref|ZP_05743435.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|302191223|ref|ZP_07267477.1| DNA-binding response regulator [Lactobacillus iners AB-1] gi|309805234|ref|ZP_07699286.1| response regulator ArlR [Lactobacillus iners LactinV 09V1-c] gi|309808122|ref|ZP_07702036.1| response regulator ArlR [Lactobacillus iners LactinV 01V1-a] gi|309810189|ref|ZP_07704034.1| response regulator ArlR [Lactobacillus iners SPIN 2503V10-D] gi|312871771|ref|ZP_07731859.1| response regulator ArlR [Lactobacillus iners LEAF 3008A-a] gi|312872980|ref|ZP_07733040.1| response regulator ArlR [Lactobacillus iners LEAF 2062A-h1] gi|312874189|ref|ZP_07734223.1| response regulator ArlR [Lactobacillus iners LEAF 2052A-d] gi|312875576|ref|ZP_07735577.1| response regulator ArlR [Lactobacillus iners LEAF 2053A-b] gi|315653632|ref|ZP_07906552.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|325912125|ref|ZP_08174523.1| response regulator ArlR [Lactobacillus iners UPII 143-D] gi|325912567|ref|ZP_08174950.1| response regulator ArlR [Lactobacillus iners UPII 60-B] gi|329920102|ref|ZP_08276933.1| response regulator ArlR [Lactobacillus iners SPIN 1401G] gi|259167917|gb|EEW52412.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|308165468|gb|EFO67699.1| response regulator ArlR [Lactobacillus iners LactinV 09V1-c] gi|308168634|gb|EFO70738.1| response regulator ArlR [Lactobacillus iners LactinV 01V1-a] gi|308169461|gb|EFO71509.1| response regulator ArlR [Lactobacillus iners SPIN 2503V10-D] gi|311088830|gb|EFQ47273.1| response regulator ArlR [Lactobacillus iners LEAF 2053A-b] gi|311090259|gb|EFQ48669.1| response regulator ArlR [Lactobacillus iners LEAF 2052A-d] gi|311091502|gb|EFQ49886.1| response regulator ArlR [Lactobacillus iners LEAF 2062A-h1] gi|311092713|gb|EFQ51069.1| response regulator ArlR [Lactobacillus iners LEAF 3008A-a] gi|315488994|gb|EFU78636.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|325476075|gb|EGC79243.1| response regulator ArlR [Lactobacillus iners UPII 143-D] gi|325477988|gb|EGC81117.1| response regulator ArlR [Lactobacillus iners UPII 60-B] gi|328936556|gb|EGG33000.1| response regulator ArlR [Lactobacillus iners SPIN 1401G] Length = 241 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 138/236 (58%), Gaps = 11/236 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL L+ E ++ V G G++L +DAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLARFVELELQHEKYDTTVESNGRKGLDLALRDNYDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++R Sbjct: 63 IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121 Query: 118 --RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R+ G A Q +I DL++ + V + LT +EY ++ L KN +T+E Sbjct: 122 EKRASGEAAGVQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ + E +++V++ LR K+ + G +YI+TV G GY++R + DE Sbjct: 182 QLLKKIWGSDSKIETNVVEVYVRYLRNKI-DVPGRSSYIKTVRGTGYMVRTDELDE 236 >gi|170731404|ref|YP_001763351.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169814646|gb|ACA89229.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 225 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 130/228 (57%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E+F V GE + K +DA++LD+ L I G Sbjct: 1 MKLLLVEDNAELAHWIVNLLRGEDFAVDSVGDGERADTVLKTERYDAVLLDMRLPGISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +V GDL + + L +E+ ++E L L++N T++K ++ ++ Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DEP ID++I +LRK L AG I T+ G GY+LR + ++ Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AGSTAEIITLRGLGYILRTKSAND 225 >gi|296534444|ref|ZP_06896881.1| transcriptional activator protein CzcR [Roseomonas cervicalis ATCC 49957] gi|296265229|gb|EFH11417.1| transcriptional activator protein CzcR [Roseomonas cervicalis ATCC 49957] Length = 258 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/184 (38%), Positives = 113/184 (61%), Gaps = 1/184 (0%) Query: 45 FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104 +D ++LD+ + F LR +R + PV I++ S+ED+ L GADD + +P Sbjct: 45 YDVVVLDVADARLQAFAALREIRRRGLRMPVVIITNPISVEDEQTALNIGADDVLLRPVR 104 Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164 L+AR++AI+RR GH S + G++ ++ +TV V G + +T +E+ ++E+L LR Sbjct: 105 APVLIARMQAILRRGLGHTSSQLTCGNVVLDQARRTVSVDGRHVRITCREFDVLEMLMLR 164 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + LTKE F++ Y D P+ +I+DVF+CKLR+KL+ AAG + T+WGRGYVL E Sbjct: 165 RGVLLTKEQFMSRAYGVEDGPDQRILDVFVCKLRRKLA-AAGSAEIVRTIWGRGYVLEEP 223 Query: 225 AKDE 228 + E Sbjct: 224 SMAE 227 >gi|209548520|ref|YP_002280437.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534276|gb|ACI54211.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 223 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAIILD+GL D+ G Sbjct: 1 MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPDLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S I+ G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LRKK+ G + IETV G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214 >gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM 17244] gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM 17244] Length = 232 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 135/230 (58%), Gaps = 6/230 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ +A ++L L E +N+ V G DG+ ++D IILDL L ++ G E+ Sbjct: 4 ILLVEDELKIARFLQLELTHEGYNLTVATEGRDGLLKAMDDKYDLIILDLMLPNLSGIEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R LR KI+TP+ +L+ S + DKV GL GADDY++KPF EEL+ARIR I+ R Sbjct: 64 CRRLRANKITTPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKILSRQVVI 123 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++I G ++++ + T + I LT KE++++E L + KN LT+E +++ Sbjct: 124 SETKEREAVIKAGKITLDKNTYTAHFEDEEISLTKKEFELLEYLMINKNIVLTREQIVSN 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ E E + DV+I LR K+ +YI TV G GY +++ ++ Sbjct: 184 VWGYDYESETNVTDVYIRYLRSKIDQKYDT-HYIRTVRGIGYQFKDDEEE 232 >gi|295693362|ref|YP_003601972.1| response regulator [Lactobacillus crispatus ST1] gi|295031468|emb|CBL50947.1| Response regulator [Lactobacillus crispatus ST1] Length = 238 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K L+ +EL L+ EN+ V + G G+E +FDAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLSRFVELELQHENYETVVENNGRKGLEDALSQDFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 63 IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ DL++ + V G I LT +EY ++ L KN +++ Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + LN ++ E +++V++ LR K+ + G +YI+TV G GY++R+ D+ Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DTPGQPSYIKTVRGTGYMVRDEDDDQ 237 >gi|110834570|ref|YP_693429.1| DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110647681|emb|CAL17157.1| DNA-binding response regulator [Alcanivorax borkumensis SK2] Length = 222 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED ALA + ML+ + V G D + FD +ILDLGL + G Sbjct: 1 MRILLVEDSIALADQLMPMLREHGYAVDWLADGRDALPALNDDPFDLVILDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL RV + PV IL+ S +++ GLQSGADDY++KPF+ +EL+ R++A++RR+ Sbjct: 61 QVLEQWRVEGQAVPVLILTARDSWAERIEGLQSGADDYLAKPFHPDELLLRVQALLRRTH 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A S + G +++ + +V I LTG E++M+ + L+K +HLY Sbjct: 121 GRANTSQLTAGTFTLDENRHSVWSGEEEIRLTGAEFRMLRYFMHNPDRLLSKGQLASHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + + +++V + +LR+KL GK IET G+GYV A+ Sbjct: 181 DNESDRDSNVLEVHVNRLRRKL-----GKTVIETRRGQGYVFTGKAQ 222 >gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131] gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131] Length = 228 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G++ EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEGNGREGLKTALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|220912472|ref|YP_002487781.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219859350|gb|ACL39692.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 228 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ L ++++ L++E + V V G D + L D ++LDLGL DI G + Sbjct: 3 RILVVDDEPQLLRAMQINLRAEGYAVSVAANGTDALHLAASNPPDVLVLDLGLPDIEGAD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R A P+ +LS DKV L +GADDY++KPF +EL+AR+RA+ RRS Sbjct: 63 VIRGIR-AWSDLPIVVLSARQGSADKVEALDAGADDYVTKPFGLDELLARLRAVERRS-A 120 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H + +I TG+L ++L A TV G R+HLT +E+ +++LL + +T+ L + Sbjct: 121 HTPAGVAVIQTGNLLIDLGAATVTRNGKRVHLTPREWDVLQLLVTNRGKLITQRQLLQTV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + E + + V++ +LR+KL ++ T G+GY E Sbjct: 181 WGPAYQEETQYLRVYMAQLRRKLETDPAHPKHLITAAGQGYRFDET 226 >gi|329947016|ref|ZP_08294428.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon 170 str. F0386] gi|328526827|gb|EGF53840.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon 170 str. F0386] Length = 219 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 129/220 (58%), Gaps = 6/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + + LK+ F + T G + +EL FD IILD+GL DI GFEV Sbjct: 4 ILIVEDESRIVAFLTKGLKAAGFTTHTTAAGREAVELALQTSFDLIILDVGLPDIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR ++ PV +L+ SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR +R Sbjct: 64 LQQLRGQGVAAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPEAAG 123 Query: 123 AQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + +T D+ ++L +T+ ++G + L+ +E+ + E L++E L+ ++ Sbjct: 124 ADQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSAVWGL 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +++V++ LR KL G++ +ETV G GY L Sbjct: 184 DFDPGSNVVEVYVSYLRNKL-----GRDRVETVRGMGYRL 218 >gi|315647496|ref|ZP_07900600.1| transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Paenibacillus vortex V453] gi|315277120|gb|EFU40458.1| transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Paenibacillus vortex V453] Length = 231 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 129/227 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ AL + I L+ N++V + GE+ +E + Y++D I+LDL L I G Sbjct: 1 MKLLLVEDETALRNIIAKGLRRCNYSVDLAADGEEALEFYEVYDYDLIVLDLNLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + ILS + IED ++GL GA+DY+ KPF+ EL ARIR+++RRS Sbjct: 61 EVLRRVRSNNNEIKILILSARTEIEDIIKGLDDGANDYLVKPFDFNELEARIRSLLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GD+ VN K + + LT KEY ++E L KN ++ E + H++D Sbjct: 121 IQNDVVLTLGDMKVNTAQKFAAIYDIKFDLTKKEYSILEYLMFNKNKVISPEQLIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I L+KK+ + +I+ + G+GY++ E+ D Sbjct: 181 SEVDSFSNSLKYHIYSLKKKIRAVSANDEFIKNIRGQGYIISESKVD 227 >gi|161521632|ref|YP_001585059.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189352202|ref|YP_001947829.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221210801|ref|ZP_03583781.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|160345682|gb|ABX18767.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189336224|dbj|BAG45293.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221169757|gb|EEE02224.1| DNA-binding response regulator [Burkholderia multivorans CGD1] Length = 221 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L + FD ++LD L + GF Sbjct: 1 MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR A +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L ++ ++ E+ G + L+ +E+ ++E+L+ R +K+ LN L+ Sbjct: 121 GHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++RKKL G I T G GY Sbjct: 181 FGNEPSANAVEQYVTRVRKKLQ---GSSVEIRTARGMGY 216 >gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 223 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K +A I+ L+ ENF V + GE+G+ + + +D I++D+ L G Sbjct: 1 MKILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHYDLILMDIMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR +++TPV L+ S+ED V GL SG+DDY++KPF EL+AR++A+VRR Sbjct: 61 TVIKELRSKEVTTPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V I LT KEY ++E N LT+ M H++D Sbjct: 121 KDRGAEIYFADLRLDPVTHKVWRADKEIDLTAKEYGLLEYFMRNPNQVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + IIDV++ LRKK+ + K I T+ G GYVL+E+ Sbjct: 181 YTFDSFTNIIDVYVNYLRKKI-DKDYSKKLIHTIRGVGYVLKED 223 >gi|308049852|ref|YP_003913418.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] gi|307632042|gb|ADN76344.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] Length = 224 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 126/219 (57%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD L H +++ L V + +G L Y D ++DLGL D G Sbjct: 1 MQILVIEDDPLLCHHLKVRLSELGNQVQASQTASEGEYLANNYPLDIAVVDLGLPDESGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR + P+ IL+ S +DKV GL +GADDY+ KPF EEL+AR+ A+VRRS Sbjct: 61 SLIQRLRDQGKAFPILILTARDSWQDKVEGLNAGADDYLVKPFRIEELMARLNALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G L ++L K+V + G + LT EYQ++E L ++K+ L+ LY+ Sbjct: 121 GFIKPEISCGSLKMDLTGKSVTLAGDLLELTAFEYQILEYLMRHHQQVISKQRLLDVLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R E + ++V I +LRKKL + G N I T+ G+GY Sbjct: 181 DR-EGDPNTVEVMISRLRKKLV-SGGMNNPIVTIRGQGY 217 >gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 223 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DA+ILD+GL ++ G Sbjct: 1 MRILIVEDDTNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S IV G + ++ V G + LT E++++ L +++ + H+YD Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVAGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+VFI +LRKK+ N + IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGN-----DLIETVRGLGYRMQ 217 >gi|295093355|emb|CBK82446.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 228 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 1/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+KAL+ +++++LK N++V G+D + +D +ILD+ + + GF Sbjct: 1 MRLLLAEDEKALSSALQVILKHNNYSVDAVYNGQDAYDYIMAGVYDGVILDVMMPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R PV +L+ + +DK+ GL GADDY++KPF +EL+ARIRAI RR Sbjct: 61 TVLSKIRAEGCDVPVIMLTAKAETDDKINGLDLGADDYLAKPFETKELLARIRAITRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GD ++N + G + L KEYQ++ELL +N ++ E+ + ++ Sbjct: 121 EAVSTEMKYGDCTLNSLNYELSSSGGSVKLQNKEYQIMELLMANQNAIISAELMMEKIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + E+ ++ V I LRKKLS G + I+ V +GY+L +D T Sbjct: 181 YDTDTEISVVWVNISYLRKKLSQIGSGVS-IKAVRNQGYILEYKEEDRT 228 >gi|312115081|ref|YP_004012677.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220210|gb|ADP71578.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 230 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+ + + + GE+G L + +DAIILDLGL I G Sbjct: 1 MRILVVEDDVDLSRQLVAAMTDAGYAADAAFDGEEGAWLGETEPYDAIILDLGLPKIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R A I TPV IL+ +KV G+ +GADDY++KPF EE++ARIRA++RRS Sbjct: 61 SILERWRKADIKTPVLILTARDRWSEKVAGINAGADDYVAKPFQMEEVIARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A++ + GDL ++ V +G + LTG E++++ L ++ +++ ++HLY Sbjct: 121 GVAKAELECGDLRLDTRTARVTWKGTAVKLTGLEFRLLSYLMHHQSRVVSRTELVDHLYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + I+VFI +LR+K+ + I TV G GY L Sbjct: 181 QDFERDSNTIEVFIGRLRRKIP-----ADIIHTVRGLGYCL 216 >gi|209974323|gb|ACJ04041.1| CsrR [Streptococcus pyogenes serotype M3] Length = 228 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI +PF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVRPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 220 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G I V G GY++ + A Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GAELIRNVRGLGYMIAKEA 220 >gi|86361041|ref|YP_472928.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86285143|gb|ABC94201.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 222 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA + L+ + + + GED L K E+ A+ILDL L + G Sbjct: 1 MRLLVVEDNKELAAWLGKALRQAQYTIDIAYDGEDAEHLLKVAEYSAMILDLSLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV IL+ +S++ +V GL SGADDY++KPF EL ARIRA+VRR + Sbjct: 61 TLLKRLRQSGNKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S I G+L + + V+G + LT +EY ++E L ++ TT++K ++ Sbjct: 121 DRASSEITVGNLRFSGGTRQFFVEGEPLQLTPREYAVLEQLVMKLGTTVSKAALSESVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DE + I++++ +LRKKL ++ I T+ G GY+LR Sbjct: 181 FDDEADPSAIEIYVHRLRKKLEASS---VQIATLRGLGYLLR 219 >gi|84578942|dbj|BAE72909.1| two-component response regulator mutated protein M3-f [Streptococcus pyogenes] Length = 228 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIPTVRGMGYVIRE 227 >gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 224 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G ++++ V V G+ + +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGPVTLDTRTGKVSVSGNPVKMTSHEYRLLSYLMHHSGRVVSRSELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ ++RKKL + I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDC-----DVIQTVRGLGYLL 216 >gi|255533554|ref|YP_003093926.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255346538|gb|ACU05864.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 227 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLIED L I L E + V G G+E+ Y+FD I+LD+ L + G + Sbjct: 5 KVLLIEDTPDLVSVILRGLSEEGIEISVAADGVTGLEMAFKYDFDLIVLDIMLPVMNGIQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + +L+ + S E+ V GL+SGADDY+ KPF EELVAR+R ++RRS Sbjct: 65 VCKEIRKRNTDVAILMLTALGSTENIVTGLESGADDYLVKPFKLEELVARMRTLIRRSSK 124 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I DL +N+ +KTV G ++LT EY+++E L N L++ L +++ Sbjct: 125 QAAVTDRISIADLEINIASKTVTKTGKPVNLTATEYRLLEYLLKNHNKVLSRIQILENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D ++DV+I LRKK+ N GG+ I TV+G GY+L+E Sbjct: 185 DIDFNLGTNVVDVYINYLRKKIDNVNGGR-LIHTVFGMGYILKE 227 >gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 224 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G ++++ V V G+ + +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGPVTLDTRTGKVSVSGNPVKMTSHEYRLLSYLMHHSGRVVSRSELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ ++RKKL + I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDC-----DVIQTVRGLGYLL 216 >gi|126174714|ref|YP_001050863.1| two component transcriptional regulator [Shewanella baltica OS155] gi|153001013|ref|YP_001366694.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160875726|ref|YP_001555042.1| two component transcriptional regulator [Shewanella baltica OS195] gi|125997919|gb|ABN61994.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151365631|gb|ABS08631.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160861248|gb|ABX49782.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] Length = 227 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 4 MRILVVEDDPILSHHLKVQLSDLGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR A + P+ IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 64 SLIEQLREAGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I +G+L ++L AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 124 GFVKPVICSGELKLDLAAKQVTLSDEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G N I T+ G+GY Sbjct: 183 GDKEGDPNTIEVMVSRLRKKLTR-DGIDNPIVTIRGQGY 220 >gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 228 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E +FD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKTPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLSILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|170690170|ref|ZP_02881337.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170144605|gb|EDT12766.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 223 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 133/225 (59%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + L +F V D G +G+ L EFD I+LD+ L I GF Sbjct: 1 MRILIIEDEPKMAAYLRKGLVEASFTVDTADNGVNGLFLALHEEFDLIVLDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR K TPV +L+ ++ DKV GL+ GADDY+SKPF E +ARIR+++RR+ Sbjct: 61 ELLRRLRKEK-QTPVLLLTARDTVADKVEGLELGADDYLSKPFAYAEFLARIRSLLRRAP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ D+ V+ + V+ RI LT +E+ +++LL+ R+ LT+ + ++D Sbjct: 120 RAVKDVLRIADMEVDFIKRRVKRGDLRIDLTAQEFSLLQLLAERQGEVLTRTFITSQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++D + +LR K+ N+ K + TV G GYVL + + Sbjct: 180 MNFDSDTNVVDAAVKRLRAKIDNSFETK-LLHTVRGMGYVLEDRS 223 >gi|304384695|ref|ZP_07367041.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304328889|gb|EFL96109.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 228 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 136/227 (59%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K+LA +EL L+ E + V G G+E +FDAI+LDL L +I G E Sbjct: 3 KILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEINGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R KI TP+ +++ SI D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 VCRRIRREKI-TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVDL 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + D+ + + + V+ I+LT +EY+++ LL N ++E L Sbjct: 122 EEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLTKREYELLLLLMENVNVVQSRETLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ D E ++DV+I LR K+ + AG +YI+TV G GYV+R Sbjct: 182 SKVWGLEDGVETNVVDVYIRYLRNKI-DVAGQPSYIQTVRGTGYVMR 227 >gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 628 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 125/224 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ ML S+ + V + + G+ G E + +D ++LD+ L + G Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR P+ +L+ ++ +DKV+GL +GADDY+ KP + EL ARIRA++RRS Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ + ++ V G + LT KEY ++ELL + T + + L+ L+ Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + I LR+KL A G +IETV+G GY L +N Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 2/124 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++DD + +I+ +L+ D + + D ++LD+ + + G E Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R PV ++ + + + + Q+GADDY++KPF EL RI ++R+ Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616 Query: 120 RGHA 123 + A Sbjct: 617 QNLA 620 >gi|221201787|ref|ZP_03574824.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2M] gi|221207708|ref|ZP_03580716.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2] gi|221214547|ref|ZP_03587517.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1] gi|221165437|gb|EED97913.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1] gi|221172554|gb|EEE04993.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2] gi|221178207|gb|EEE10617.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2M] Length = 225 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E+F V GE + K +DA++LD+ L I G Sbjct: 1 MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +V GDL + + L +E+ ++E L L++N T++K ++ ++ Sbjct: 121 GVGSTQLVCGDLVYAFGTREFRCGDAPLMLRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 DEP ID++I +LRK L A I T+ G GY+LR A Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AASSAEIITLRGLGYILRAKA 222 >gi|332142499|ref|YP_004428237.1| Response regulator consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552521|gb|AEA99239.1| Response regulator consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 226 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/220 (38%), Positives = 127/220 (57%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD +A I L E G G E DA+ILD+ L ++ GF Sbjct: 1 MKVLLVEDDPKVASHIANGLLGEGHECITVGDGASGFNEASSNELDAVILDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR +TPV +LS S +EDKV+GL++GA+DY++KPF EEL+AR+ + R++ Sbjct: 61 SVLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNK 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++LI GDL+++L + V I L KE+Q++E L K +T+ M L ++ Sbjct: 121 DGEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +P+ +IDV I +LR+K+ A IETV G GY Sbjct: 181 NYHFDPQTNVIDVHISRLRQKVDKAF-NVPLIETVRGTGY 219 >gi|59711133|ref|YP_203909.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Vibrio fischeri ES114] gi|59479234|gb|AAW85021.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Vibrio fischeri ES114] Length = 226 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+I L+ED++ L H + LK + VY ++ + E D +I+DLGL D G Sbjct: 1 MQIALVEDNEILNHHLSSQLKDQGHVVYSDKTASAFLQTVQKKEHIDVMIVDLGLPDFDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ +R +I +P+ IL+ + +DKV GL++GADDY+ KPF EEL+AR+ A+ RR+ Sbjct: 61 ITLIKQIRRKEIHSPILILTARGNWQDKVEGLEAGADDYLVKPFQSEELIARLYALARRA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G QS + ++ +++ AKT+ V G + LT EY + L ++K+ F++ LY Sbjct: 121 AGFTQSKVTAENIELDIKAKTIHVDGQFLQLTSFEYDIAAYLIKNSLKIISKQQFVDALY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E ++ I+V I +LRKK + A G I TV G+GY + AK Sbjct: 181 QEDSEVQLNNIEVIISRLRKKFA-AVGHNELITTVRGQGYQFQIKAK 226 >gi|297183269|gb|ADI19407.1| response regulators consisting of a chey-like receiver domain and a winged-helix DNA-binding domain-protein [uncultured Pseudomonadales bacterium HF0500_12O04] Length = 222 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 127/222 (57%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + G D + + +D IILDLGL I G Sbjct: 1 MRLLLVEDHVPLADELMASLTRSGYALDWLADGRDALYQGQSEPYDLIILDLGLPGISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV IL+ SS +++ GL++GADDY++KPF+ EEL+ R++A++RRS Sbjct: 61 EVLKQWRAQGLATPVLILTARSSWSERIEGLKAGADDYLTKPFHPEELLLRVQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q L+ L ++ + V G ++ LT E++++ L L+K HLY Sbjct: 121 GQANQPLLKCAGLHLDEARQCVINDGAQVQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DG E + +++V + LR+KL G++ IET G+GY+ Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYIF 217 >gi|71908428|ref|YP_286015.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gi|71848049|gb|AAZ47545.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 218 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L + + L+ F V G + + FD ++LDLGL + G Sbjct: 1 MRILLVEDDPELGDGLTVGLRQAGFAVDWLRDGNSADQALQSESFDFVVLDLGLPRLSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R P+ IL+ + DKV GL +GADDY+ KP + +EL ARIRA+ RRS Sbjct: 61 EVLNRARGRGQDMPILILTARDATGDKVSGLDAGADDYLVKPIDLDELTARIRALTRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L+ G+LS++L A V + G I L+ +E+ ++++L LT+ LY Sbjct: 121 GRAAPLLTHGELSIDLAAHRVTLAGQEIELSSREFSLLQMLLESAGRVLTRTQLEQSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DEP+ ++V I LRKKL G I T+ G GY + Sbjct: 181 WHDEPDSNALEVHIHHLRKKL-----GSELIRTLRGVGYTI 216 >gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Sinorhizobium meliloti 1021] gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 223 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DA+ILD+GL ++ G Sbjct: 1 MRILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S IV G + ++ V G + LT E++++ L +++ + H+YD Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVAGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+VFI +LRKK+ N + IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGN-----DLIETVRGLGYRMQ 217 >gi|330966499|gb|EGH66759.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 220 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 128/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+LL+EDD+A+ I + L +E Y D EDG+ + L L +P Sbjct: 1 MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF++LR LR +++ PV IL+ D++ GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG AQ L+ +S++ ++ V QG + +T EYQ++ L +R +T+E N Sbjct: 118 RSRGRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNT 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY +D+ E ++V I LRKKLS I TV G GY+L Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216 >gi|238783526|ref|ZP_04627548.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri ATCC 43970] gi|238715581|gb|EEQ07571.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri ATCC 43970] Length = 220 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ L I + L SE + + L + ++ +ILDLGL D G Sbjct: 1 MKLLIVEDDELLQRGIAMALTSEGYACDCAGTAAEAQGLLQSSQYSMVILDLGLPDQDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R ++ PV IL+ ++ED+V GL +GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 VLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L+ DLS+NL + V +Q + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVWLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LR+KL GK+ I T+ G GY L Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTIRGVGYRL 216 >gi|315038843|ref|YP_004032411.1| two-component system regulator [Lactobacillus amylovorus GRL 1112] gi|325957282|ref|YP_004292694.1| two-component system regulator [Lactobacillus acidophilus 30SC] gi|312276976|gb|ADQ59616.1| two-component system regulator [Lactobacillus amylovorus GRL 1112] gi|325333847|gb|ADZ07755.1| two-component system regulator [Lactobacillus acidophilus 30SC] gi|327184012|gb|AEA32459.1| two-component system regulator [Lactobacillus amylovorus GRL 1118] Length = 238 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL L+ EN+ V + G G++ +FDAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALSQDFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 63 IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ DL++ + V G I LT +EY ++ L KN +++ Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + LN ++ E +++V++ LR K+ + G +YI+TV G GY++R+ D+ Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DVPGQPSYIKTVRGTGYMVRDEDDDQ 237 >gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21] gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 224 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K +A I+ L+ E + V+ GE+G++L FD I+LD L G Sbjct: 1 MRILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR K TP+ +L+ S+ED V GL SG+DDY++KPF EL+AR+RA++RRS Sbjct: 61 SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V + I LT KEY ++E + LT+ M H++D Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IIDV++ LRKK+ A K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDREA-DKKLIHTVRGVGYILKE 222 >gi|148546459|ref|YP_001266561.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148510517|gb|ABQ77377.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|313497543|gb|ADR58909.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 225 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + Y FD I+DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGLPGISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + H + LT EY+++E L + K+ + LY Sbjct: 121 GFIQSTITAGPLVLDLNRKQATLDEHALALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G +E + +I+V + +LR+KL G K I+TV G GY+ E + Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEGERGFKP-IDTVRGLGYLFTERCR 225 >gi|107021602|ref|YP_619929.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116688054|ref|YP_833677.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105891791|gb|ABF74956.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116646143|gb|ABK06784.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 225 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E+F V GE + K +DA++LD+ L I G Sbjct: 1 MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +V GDL + + L +E+ ++E L L++N T++K ++ ++ Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DEP ID++I +LRK L AG I T+ G GY+LR Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AGSTAEIITLRGLGYILR 219 >gi|330811228|ref|YP_004355690.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379336|gb|AEA70686.1| Putative response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 225 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H ++ L V E+ + + + D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLQTRLTDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLPGISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS IV G L ++L+ K + + LT EY+++E L + K+ + LY Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DE + +I+V + +LR+KL AG K I+TV G GY+ E + Sbjct: 181 DDDERDPNVIEVLVGRLRRKLEAPAGFKP-IDTVRGLGYLFNERCQ 225 >gi|206561833|ref|YP_002232598.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|198037875|emb|CAR53819.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 225 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E+F V GE + K +DA++LD+ L I G Sbjct: 1 MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +V GDL + + L +E+ ++E L L++N T++K ++ ++ Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DEP ID++I +LRK L AG I T+ G GY+LR Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AGSTAEIITLRGLGYILR 219 >gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1] gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1] Length = 224 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 136/225 (60%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K L I+ +L E + V V+ G G+E +D IILD+ L +I G+ Sbjct: 3 KILIIEDEKQLNKQIKEILSEEGYTVDVSFDGATGLEKILSSPYDLIILDIMLPEINGYN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R KI TPV ++S I+D+++GL SGADDY+SKPF+ EL+AR++AI+RR+ Sbjct: 63 ILKHIRENKILTPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAILRRTFS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +I +L ++L+ + V + + LT KEY +IE L +N ++K + +++ Sbjct: 123 QYEQIISIYNLKIDLNTRKVYINDSEVQLTSKEYGIIEYLVSNRNKVVSKFAIIEYVWGD 182 Query: 182 RDEP--EVKIIDVFICKLRKKLSNAAGGKNY--IETVWGRGYVLR 222 +P +DV I +RKK+ G K Y I+TV G GY+L+ Sbjct: 183 EFDPFSMSNFLDVHIKNIRKKI----GDKEYKIIQTVRGIGYLLK 223 >gi|229167490|ref|ZP_04295228.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH621] gi|228616052|gb|EEK73139.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH621] Length = 224 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 133/223 (59%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+++LA +EL LK E + V + G G+E +D I+LDL L + G EV Sbjct: 4 ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLMLPGLNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR K STP+ +L+ SI D+V GL SGADDY+ KPF EEL+AR+R I RR Sbjct: 64 CRRLRATK-STPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREENT 122 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q S + DL + ++++T+ + I LT KE++++ + N LT+++ L+ ++ Sbjct: 123 EQKHASFLSFKDLQLQIESRTITKENEEIELTNKEFELLLMFMKNINRVLTRDILLDQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I+DV++ LR KL ++ + YI+TV G GY+++ Sbjct: 183 GYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224 >gi|167624453|ref|YP_001674747.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167354475|gb|ABZ77088.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 224 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 129/219 (58%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 1 MRILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++LR + PV IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 SLIQSLRDDGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + LI +G L ++L AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 121 GFVKPLISSGALELDLAAKQVTLNELPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G +N I T+ G+GY Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-GGIENPIITIRGQGY 217 >gi|291548797|emb|CBL25059.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 224 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 135/227 (59%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MR+L++ED+ L + ++ L E+++V D DG+E + + +D IILD+ L Sbjct: 1 MRLLIVEDENDLRNIVKKRLVKEHYSV---DACGDGLEAMAYIDMTSYDGIILDIMLPGK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+E+LR LR + TPV +L+ SIED+VRGL GADDY+ KPF EEL+ARIR ++R Sbjct: 58 DGYEILRELRQREDDTPVLLLTAKDSIEDRVRGLDLGADDYLIKPFAFEELLARIRVMMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + DL ++ D + V G+ I L+ KE+ ++E L KN +T++ + Sbjct: 118 RKPQFTSNQLKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQN 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D E +IDV+I LRKK+ +A + I TV G GYV+REN Sbjct: 178 AWDFDFEGGSNVIDVYIRYLRKKI-DAQYEQKLIHTVRGVGYVMREN 223 >gi|238854466|ref|ZP_04644805.1| two-component system regulator [Lactobacillus jensenii 269-3] gi|260665486|ref|ZP_05866333.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|282934536|ref|ZP_06339788.1| response regulator ArlR [Lactobacillus jensenii 208-1] gi|313471830|ref|ZP_07812322.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153] gi|238832893|gb|EEQ25191.1| two-component system regulator [Lactobacillus jensenii 269-3] gi|239530126|gb|EEQ69127.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153] gi|260560754|gb|EEX26731.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|281301374|gb|EFA93666.1| response regulator ArlR [Lactobacillus jensenii 208-1] Length = 240 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 136/232 (58%), Gaps = 11/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA ++L L+ E + V + G G++L +FDAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVNI 121 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + Q ++ DL++ + V I LT +EY ++ L KN +++E Sbjct: 122 EKKVSSNTAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LN ++ E +++V++ LR K+ +A +YI+TV G GY++RE+ Sbjct: 182 QLLNKIWGPESNIETNVVEVYVRYLRNKI-DAPDRPSYIKTVRGTGYMVRED 232 >gi|161507847|ref|YP_001577811.1| two-component system regulator [Lactobacillus helveticus DPC 4571] gi|260103140|ref|ZP_05753377.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] gi|160348836|gb|ABX27510.1| Two-component system regulator [Lactobacillus helveticus DPC 4571] gi|260083050|gb|EEW67170.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] gi|323466118|gb|ADX69805.1| Two-component system regulator [Lactobacillus helveticus H10] gi|328464789|gb|EGF36104.1| two-component system regulator [Lactobacillus helveticus MTCC 5463] Length = 238 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 136/237 (57%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL L+ EN+ V + G G+E +FDAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLARFVELELQHENYETVVENNGRKGLEDALNQDFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 63 IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIH--------LTGKEYQMIELLSLRKNTTLTK 171 A + V V T+E +H LT +EY ++ L KN +++ Sbjct: 122 EKDASRVTVAKQKIVKFKNLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + LN ++ E +++V++ LR K+ + G +YI+TV G GY++R+ D+ Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DVPGQPSYIKTVRGIGYMVRDEDDDQ 237 >gi|329849000|ref|ZP_08264028.1| response regulator [Asticcacaulis biprosthecum C19] gi|328844063|gb|EGF93632.1| response regulator [Asticcacaulis biprosthecum C19] Length = 234 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 131/220 (59%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIED+ + A I +L+ E F V + G+ G+ +D I+LD L DI G ++ Sbjct: 6 ILLIEDEASNADIISSVLRKEGFAVTWAETGQKGLAAAGMTPYDLIVLDRMLPDISGMDI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A + TP+ +LS +S E++ GL+ GADDY+ KPF EL ARIRA++RRSR Sbjct: 66 ITRLRSAGVETPILMLSALSRSENRSEGLEGGADDYLGKPFEDHELTARIRALLRRSRNQ 125 Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 S +++ GD+ +++ ++T QG + L+ KE+++++LL +T++M L ++ Sbjct: 126 VHSAVMLYGDIELHVKSRTAHRQGVHLALSPKEFEILKLLMEHAGDIVTRDMLLKEVWHL 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P+ +IDV + +LR +L + +ETV G G+ L Sbjct: 186 NFDPQTNVIDVNMSRLRHRLEDDF-ATPCLETVRGAGFRL 224 >gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 237 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 136/224 (60%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ + +++ L E ++V V G + +++ + + D +ILD+ + + GF Sbjct: 11 VRVLVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRTVKPDLLILDVMMPGMDGF 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +LR LR + PV +L+ ++ED+V+GLQ G+DDY++KPF+ ELVAR+ AI+RRS Sbjct: 71 TLLRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRRSG 130 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +G A + IV GDL ++ DA V GH I LT E++++ L L N ++K L+H+ Sbjct: 131 QGTGAPTRIVVGDLVLDEDAHQVLRAGHEIELTATEFKLLRYLMLNANKVVSKAQILDHV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I LRKKL G I+TV G GY LR Sbjct: 191 WQYDFGGDANIVETYISYLRKKLDGY--GPPMIKTVRGVGYSLR 232 >gi|86356926|ref|YP_468818.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86281028|gb|ABC90091.1| two-component response regulator protein [Rhizobium etli CFN 42] Length = 223 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 125/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I+ G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHASSEIICGPVRLDTKSSKATVNGAALKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LRKK+ G + IETV G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214 >gi|167624938|ref|YP_001675232.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167354960|gb|ABZ77573.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/200 (40%), Positives = 118/200 (59%), Gaps = 5/200 (2%) Query: 24 NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83 N+ V D GE G+ Y +DA I+D+GL + G +++ LR I P+ IL+ S Sbjct: 24 NYTVDTADDGEIGLFQGSEYNYDAAIIDVGLPKLDGIALIKELRSLDIGFPILILTARDS 83 Query: 84 IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143 +DKV GL +GADDY++KPF+ EELVAR++A++RRS G A +I G S+N + + Sbjct: 84 WQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSAGKASPIITNGPFSLNTSSLEITK 143 Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKL-- 201 G I L+G EY++ E L L +K + H+YD + + +I+VFI +LRKKL Sbjct: 144 SGETITLSGSEYKLFEYLMLHIGEVKSKTVLTEHIYDQDFDLDSNVIEVFIRRLRKKLDP 203 Query: 202 SNAAGGKNYIETVWGRGYVL 221 N G IET+ G+GY L Sbjct: 204 DNQLG---LIETLRGQGYRL 220 >gi|296445613|ref|ZP_06887568.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296256858|gb|EFH03930.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 224 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 128/220 (58%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L + L+ + V G++G L +DA++LD+GL G Sbjct: 1 MRLLVVEDDKDLNRQLVTALEQAGYAVDRAFDGDEGHFLGDTEPYDAVVLDIGLPKKDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A + PV IL+ DKV+G +GADDY++KPF+ EEL+AR+RA++RR+ Sbjct: 61 SVLEQWRKAGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEELLARMRALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S IV G + ++ A V V G+ + LT EY+++ L +++ + HLYD Sbjct: 121 GHATSEIVCGPVRLDTKAGRVVVDGNAVKLTSHEYRLLAYLMHHNGRVVSRGEIVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++VF+ +LRKKL G + I+TV G GY+ Sbjct: 181 QDFDRDSNTVEVFVGRLRKKL-----GVDVIQTVRGLGYM 215 >gi|104781839|ref|YP_608337.1| DNA-binding response regulator [Pseudomonas entomophila L48] gi|95110826|emb|CAK15541.1| putative DNA-binding response regulator [Pseudomonas entomophila L48] Length = 220 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL I L+ E + + G G+ + FD +ILDLGL + G Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHEAFDLVILDLGLPRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR +R S PV IL+ +++D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 ELLRRVRAGGDSLPVLILTARDALDDRISGLDAGADDYLVKPFDLNELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI +S++ + V G I LT KEY+++ L + T+E LY Sbjct: 121 GRAKVLIEHAGVSLDPATQQVHYNGMEIVLTPKEYRLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +EPE ++V I LRKKL N I TV G GY++ A Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEAKA 220 >gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 224 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K +A I+ L+ E + V+ GE+G++L FD ++LD L G Sbjct: 1 MRILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLVVLDWMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR K TP+ +L+ S+ED V GL SG+DDY++KPF EL+AR+RA++RRS Sbjct: 61 SVLKELRERKNVTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V + I LT KEY ++E + LT+ M H++D Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IIDV++ LRKK+ A K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDREA-DKKLIHTVRGVGYILKE 222 >gi|189218617|ref|YP_001939258.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum infernorum V4] gi|189185475|gb|ACD82660.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum infernorum V4] Length = 268 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 126/219 (57%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +A I L+ E F V G++ + + +DA +LD+ L G Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR+LR IS P+ +LS S DK+ GL SGADDY+ KPF+ +ELVAR+RA++RR+ Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S+ G+L++NL + V +I LT KE+ ++ELL T+ +++ Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P ++DV+I KLRKK+ K I+TV G GY Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQK-LIQTVRGVGY 263 >gi|126698221|ref|YP_001087118.1| two-component response regulator [Clostridium difficile 630] gi|255099750|ref|ZP_05328727.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|115249658|emb|CAJ67475.1| Two-component response regulator [Clostridium difficile] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDDK + + L SEN++V G IE+ K Y FD I+LDL L GF Sbjct: 1 MDILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVL+ +R + PV I + S DK+ GL GADDYI+KPF+ EL+ARI+A +RR Sbjct: 61 EVLKYIRSVSV-VPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR +I DL +N+ V G ++LT E+++++LL+ + +KE Sbjct: 120 VYSSSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N ++ +++ I +LR KLS+ NYI+T+WG GY + E Sbjct: 180 YNAIWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEE 228 >gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ + + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQPDGYEVIVEVNGREGLETALEGEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|167855905|ref|ZP_02478655.1| YgiX [Haemophilus parasuis 29755] gi|167852993|gb|EDS24257.1| YgiX [Haemophilus parasuis 29755] Length = 223 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + ++L L F+V + TD G+ G++ +DA++LDL L + G Sbjct: 1 MRILLIEDDPLIGEGLKLGLSKSGFSVDWFTD-GKTGLDALSSAPYDAVVLDLTLPKMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL++ R A PV IL+ ++++++ GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 60 LEVLQSWRRANQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GH +I + + + + V ++ + LT +EY ++EL K+ LT+ LY Sbjct: 120 YGHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DE ++V I LR+KL GK +I TV G GY L +N Sbjct: 180 TWDDEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKN 219 >gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+L+L L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLNLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149] gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149] Length = 224 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+K L + LK+E+++V G++ ++ + +DA++LD+ + + G Sbjct: 1 MRILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLEGAPYDAVVLDIMMPVLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R TPV +L+ S+ED+VRGL +GA+DY+ KPF EEL+ARIR ++R+ + Sbjct: 61 SVLKTMRQKGSQTPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRKPK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q++ DL V+LD V GH I L+GKE+ ++ L L+++ HL++ Sbjct: 121 EAPQTVCKLDDLEVHLDTHQVLRAGHEIKLSGKEFALLRYLIQNTGIVLSRDRLEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +IDV+I LRKK+ + K I TV G GYV+R Sbjct: 181 YDYAGGSNVIDVYIRYLRKKIDEGSQTK-LIHTVRGAGYVMR 221 >gi|330957583|gb|EGH57843.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 220 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+LL+EDD+A+ I + L +E Y D EDG+ + L L +P Sbjct: 1 MRLLLVEDDRAIGQGIRVALNNEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF++LR LR +++ PV IL+ D++ GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLVKPFDVDELKARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G AQ L+ +S++ ++ V QG+ + +T EYQ++ L +R +T+E N Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVTFQGNEVPMTPMEYQLLHQLMIRPGKVVTRERLSNT 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY +D+ E ++V I LRKKLS I TV G GY+L Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216 >gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+L+L L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLELMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|221197319|ref|ZP_03570366.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] gi|221203992|ref|ZP_03577010.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221176158|gb|EEE08587.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221183873|gb|EEE16273.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] Length = 221 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L + FD ++LD L + GF Sbjct: 1 MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR A +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L ++ ++ E+ G + L+ +E+ ++E+L+ R +K+ LN L+ Sbjct: 121 GHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++RKKL G I T G GY Sbjct: 181 FGNEPSANAVEQYVTRVRKKLH---GSSVEIRTARGMGY 216 >gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL G DDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGVDDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ RIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLVRIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] Length = 227 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ +A ++ L+ E F V V G G++L E+D +++D + I G Sbjct: 1 MRLLIIEDEPGIAGFLKEGLEEEYFAVDVASDGRTGLDLAMTNEYDLLLVDWMIPGISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ L+ +IED V GL +GA+DYI KPF EEL+ARIR +RR R Sbjct: 61 EVCRRLRKEGNDVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRR-R 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S + TG+L+V+ + + + LT KE+ ++E L K T+ + H++D Sbjct: 120 GSESSKLSTGELTVDPASHQARCESIDLALTPKEFALLEFLLRNKGRVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +IDV+I LRKKL +AAG ++ I+T+ G GY++R+ Sbjct: 180 MHFDSDTSVIDVYINFLRKKL-DAAGCRDLIQTIRGVGYIIRDEG 223 >gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905] gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905] Length = 230 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 132/226 (58%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L+ + LK + V GE+ +EL + E+D IILDL L + G Sbjct: 1 MKLLLVEDEAVLSKILSKGLKKSGYAVDTAFDGEEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +RV + ILS S+I DK+ GL GA+DY+ KPF+ +EL ARIR ++RR+ Sbjct: 61 EVLEQIRVQSEDVKILILSARSAIHDKIAGLDRGANDYLIKPFDFQELDARIRNLLRRTF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ ++++ K V V G I +T KEY ++E L L++N ++ E + H++D Sbjct: 121 SQKSTIMSLEKITLDSSRKIVLVNGEIIPVTKKEYAILEYLMLQQNKVVSSEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I LRKK+++ G K I+TV G+GY++ E+ K Sbjct: 181 SEADLFSNSLKFHIHSLRKKIADVLGEKEVIQTVRGQGYMITESDK 226 >gi|206563234|ref|YP_002233997.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198039274|emb|CAR55239.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 226 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 129/231 (55%), Gaps = 5/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G LS + ++ + G + LT +E ++E+L LR + K+ ++ Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKDTLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + I++++ +LRKKL N I T+ G GY+L AK ET E Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLL--EAKAETAE 226 >gi|241896109|ref|ZP_04783405.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870623|gb|EER74374.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 135/227 (59%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED++ LA +EL L+ E + +V D G G++ +FD I+LDL L ++ G EV Sbjct: 4 VLVIEDEENLARFVELELQHEGYETHVEDNGRSGLDAALANDFDLILLDLMLPELSGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R LR K +TP+ +++ S+ D+V GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 64 ARRLREEK-NTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRRIDIE 122 Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + H+ QS++ DL+V + + I+LT +EY+++ +L N ++E L Sbjct: 123 TEEHSTHQSVVRYRDLTVEKENRIARRGNEIINLTKREYELLLILMENINVVQSREELLK 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E E ++DV+I LR K+ +YI+TV G GYV+R+ Sbjct: 183 KVWGYDSEIETNVVDVYIRYLRNKIDQPDSRASYIQTVRGTGYVMRQ 229 >gi|219872086|ref|YP_002476461.1| two component transcriptional regulator/response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Haemophilus parasuis SH0165] gi|219692290|gb|ACL33513.1| two component transcriptional regulator/response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Haemophilus parasuis SH0165] Length = 223 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + ++L L F+V + TD G+ G++ +DA++LDL L + G Sbjct: 1 MRILLIEDDPLIGEGLKLGLSKSGFSVDWFTD-GKTGLDALSSAPYDAVVLDLTLPKMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL++ R A PV IL+ ++++++ GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 60 LEVLQSWRRANQDVPVLILTARDTLDERIMGLQRGADDYLCKPFALAEVVARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GH +I + + + + V ++ + LT +EY ++EL K+ LT+ LY Sbjct: 120 YGHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DE ++V I LR+KL GK +I TV G GY L +N Sbjct: 180 TWDDEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKN 219 >gi|171316878|ref|ZP_02906087.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171097959|gb|EDT42777.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 225 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 132/228 (57%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E+F V GE + K +DA++LD+ L I G Sbjct: 1 MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 EVLARLRRRSDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + +V GDL + + L +E+ ++E L L++N T++K ++ ++ Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCSDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKD 227 D+P ID++I +LRK L G I T+ G GY+LR ++A+D Sbjct: 181 LDDDPSADAIDIYIHRLRKHL---VGSTAEIITLRGLGYILRAKSAQD 225 >gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 406 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 133/227 (58%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + L+ E + V G + L + + DA++LD+ L D+ G Sbjct: 159 VRVLVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLARDFRPDAVVLDIMLPDMDGL 218 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR+ Sbjct: 219 EVLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAA 278 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++L +V GDL+++ +++ V+ G +HLT E++++ L+K L+ Sbjct: 279 RTTEALQGARLVVGDLTMDEESREVQRAGQPVHLTATEFELLRFFMRNPRRVLSKAQILD 338 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + ++++++ LRKK+ AG I T+ G GYVLR Sbjct: 339 RVWNYDFGGQANVVELYVSYLRKKID--AGRPPMIHTMRGAGYVLRP 383 >gi|330949891|gb|EGH50151.1| response regulator protein [Pseudomonas syringae Cit 7] Length = 220 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/228 (41%), Positives = 128/228 (56%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL I+ L E + V G + FD ILD+GL + GF Sbjct: 1 MRLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV IL+ + ED++ GL SGADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMI-ELLSLRKNTTLTKEMFLNH 177 G A+ LI + LD T +V H + LT KEYQ++ ELLS +T+E + Sbjct: 121 GRAKVLIEHN--GIRLDPSTQQVSYHDAAVALTPKEYQLLYELLS-PPGRVMTRERLMQL 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LY +E E ++V I LRKK S+ I T+ G GY++ E + Sbjct: 178 LYGWNEEAESNTLEVHIHHLRKKFSS-----TLIRTIRGGGYLVEERS 220 >gi|302557635|ref|ZP_07309977.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus Tu4000] gi|302475253|gb|EFL38346.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus Tu4000] Length = 271 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 131/228 (57%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++DD +A + + + E + + GED + + D ++LDL L D+ GF Sbjct: 46 VRLLVVDDDPPIADLVATVARYEGWEAVTANTGEDALRRAAEFRPDIVVLDLMLPDVDGF 105 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + PV L+ + D+V GL G DDY+ KPF EEL+AR+R ++RRS Sbjct: 106 GVLDRLRRSGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 165 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +S++ GDL+++ D + V G + LT EY+++ L R T LTK L+H+ Sbjct: 166 GPGFQRSVLRVGDLTMDEDTREVRRGGRTLSLTPTEYEVLRYLMRRSPTVLTKAQILDHV 225 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++++ + +LR+KL + G+ I+TV G GYV+R+ A+ Sbjct: 226 WEYGFGGRSNVVELVVSRLRRKLDDT--GEPLIQTVRGFGYVIRQAAE 271 >gi|269968140|ref|ZP_06182175.1| DNA-binding response regulator [Vibrio alginolyticus 40B] gi|269827271|gb|EEZ81570.1| DNA-binding response regulator [Vibrio alginolyticus 40B] Length = 219 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L I L+S +V +L +DGI+ E+DAI+LDLGL + Sbjct: 1 MKILVVEDDPRLGEQIMETLESTG---WVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ V QG + LT EY+++ +++ + H Sbjct: 118 RASGNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + I+VFI ++RKK++ I+TV G GY L Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216 >gi|218462225|ref|ZP_03502316.1| two-component response regulator protein [Rhizobium etli Kim 5] Length = 223 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 125/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I+ G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHASSEIICGPVRLDTKSSKATVNGTPLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LRKK+ G + IETV G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214 >gi|254784803|ref|YP_003072231.1| PhoB family transcriptional regulator [Teredinibacter turnerae T7901] gi|237686809|gb|ACR14073.1| transcriptional regulatory protein PhoP [Teredinibacter turnerae T7901] Length = 225 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 123/219 (56%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ A+ + S+NF + GE+G Y++D ++DLGL + G Sbjct: 1 MKMLIVEDEAAIRQQLTDYFSSQNFVIDAVADGEEGAWQAVEYDYDFAVIDLGLPKLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++R LR A PV IL+ +DKV GL++GADDY+ KPF+ EEL AR A++RR+ Sbjct: 61 EIIRRLRAAGKKYPVLILTARGHWQDKVEGLEAGADDYLVKPFHNEELRARANALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + G ++++ K V V I LT EY +E L+L ++K HLY Sbjct: 121 GSATPQLQFGPIAIDTAQKRVLVSNVAIELTSYEYNTLEYLALHAGKPVSKTELTEHLYH 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + +I+VFI +LRKKL K I T+ G+GY Sbjct: 181 QDFERDSNVIEVFIGRLRKKLDPDNQLKP-ISTIRGQGY 218 >gi|209520678|ref|ZP_03269429.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209498878|gb|EDZ98982.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 220 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V + GE + +D +LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALRAAAAQLYDLALLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRALR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 EVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I G+L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G + I V G GY++ ++A Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GADLIRNVRGLGYMIAKDA 220 >gi|218291334|ref|ZP_03495294.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|258512228|ref|YP_003185662.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218238780|gb|EED05994.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|257478954|gb|ACV59273.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 231 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 134/226 (59%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ LA +++ +LK + V V GE G +L +D ILD+ L + G Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LRA+R A + TPV +L+ ++ED+V GL +GADDY+ KPF+ +EL+AR+RA+ RR+ Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I G ++L+ +TV G + LT KE+Q++EL N L+KE+ L+ ++ Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ ++ LRKK+ + +YI TV G GY+ + Sbjct: 181 GPDADVIGNAVENYVHFLRKKI-DEPDLPSYITTVRGVGYMFHPDP 225 >gi|170736312|ref|YP_001777572.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818500|gb|ACA93082.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 221 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L + FD ++LD L + GF Sbjct: 1 MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L ++ ++ E+ G + L+ +E+ ++E+L+ R +KE LN L+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++RKKL G I T G GY Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQ---GSSVEIRTARGMGY 216 >gi|15596376|ref|NP_249870.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAO1] gi|107100628|ref|ZP_01364546.1| hypothetical protein PaerPA_01001654 [Pseudomonas aeruginosa PACS2] gi|116049111|ref|YP_792087.1| two-component response regulator PhoP [Pseudomonas aeruginosa UCBPP-PA14] gi|218892857|ref|YP_002441726.1| two-component response regulator PhoP [Pseudomonas aeruginosa LESB58] gi|254234312|ref|ZP_04927635.1| two-component response regulator PhoP [Pseudomonas aeruginosa C3719] gi|254239547|ref|ZP_04932869.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192] gi|296390450|ref|ZP_06879925.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAb1] gi|313106153|ref|ZP_07792406.1| two-component response regulator PhoP [Pseudomonas aeruginosa 39016] gi|9947104|gb|AAG04568.1|AE004548_2 two-component response regulator PhoP [Pseudomonas aeruginosa PAO1] gi|115584332|gb|ABJ10347.1| two-component response regulator PhoP [Pseudomonas aeruginosa UCBPP-PA14] gi|126166243|gb|EAZ51754.1| two-component response regulator PhoP [Pseudomonas aeruginosa C3719] gi|126192925|gb|EAZ56988.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192] gi|218773085|emb|CAW28897.1| two-component response regulator PhoP [Pseudomonas aeruginosa LESB58] gi|310878908|gb|EFQ37502.1| two-component response regulator PhoP [Pseudomonas aeruginosa 39016] Length = 225 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L + V E+ + Y D ++DLGL + G Sbjct: 1 MKLLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR S P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K V+ + LT EY+++E L + KE + LY Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E + +I+V + +LR+KL A GG I+TV G+GY+ E + Sbjct: 181 DDEERDANVIEVLVGRLRRKL-EACGGFKPIDTVRGQGYLFTERCR 225 >gi|330977884|gb|EGH77787.1| two component transcriptional regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 220 Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/228 (41%), Positives = 128/228 (56%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL I+ L E + V G + FD ILD+GL + GF Sbjct: 1 MRLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV IL+ + ED++ GL SGADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMI-ELLSLRKNTTLTKEMFLNH 177 G A+ LI + LD T +V H + LT KEYQ++ ELLS +T+E + Sbjct: 121 GRAKVLIEHN--GIRLDPSTQQVSYHDAAVALTPKEYQLLYELLS-PPGRVMTRERLMQL 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LY +E E ++V I LRKK S+ I T+ G GY++ E + Sbjct: 178 LYGWNEEAESNTLEVHIHHLRKKFSS-----TLIRTIRGVGYLVEERS 220 >gi|254489830|ref|ZP_05103025.1| response regulator receiver domain protein [Methylophaga thiooxidans DMS010] gi|224464915|gb|EEF81169.1| response regulator receiver domain protein [Methylophaga thiooxydans DMS010] Length = 219 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIEDD +LA ++ LK E F V LG IE D ++LDLGL D+ G Sbjct: 1 MQVLLIEDDPSLAQGLKTSLKREGFIVNHLQLGRLAIESVATAAPDMVVLDLGLPDMDGQ 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R PV IL+ SS++DKV GL GADDY++KPF+ +EL+AR+R RR Sbjct: 61 DVLRAIRKINAELPVLILTARSSLQDKVDGLDGGADDYLAKPFDTDELLARLRVFERRLS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V G+++++ A+ V+V G + L+ +EY +++ L T++ LY Sbjct: 121 SLKHAELVVGNVAMDTKAQQVKVNGADLELSRREYMLLKTLMENVGRVQTRDSLETKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DE I+V I LRKKL + +I TV G GY ++ Sbjct: 181 WGDEIASNAIEVHIHHLRKKLP-----EQFIRTVRGVGYTIK 217 >gi|186472785|ref|YP_001860127.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184195117|gb|ACC73081.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 237 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ L+H + ML+ + F + GE +L +D ++LDL L + G Sbjct: 13 MKLLLIEDNPTLSHWLARMLEQDAFALDTVQDGEAADQLLSMNRYDVVLLDLNLPRLSGK 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR +TPV IL+ SI++KV L +GADDY+ KPF EL+AR++ ++RR Sbjct: 73 NVLRRLRQRGDATPVMILTASGSIDEKVELLGAGADDYLVKPFEVRELIARVKVMIRRQS 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL+ ++D + ++G +++T +E ++E L LR T++K ++ ++ Sbjct: 133 ASTANEVSCGDLAFDIDTRQFTLKGVPLNVTPRERSVLETLILRMGKTVSKAALMDSIFT 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+P +++++ +LRKKL G I T+ G GY+LR+ Sbjct: 193 HDDQPSEDALEIYVSRLRKKLD---GSSAAIVTLRGLGYLLRK 232 >gi|241113399|ref|YP_002973234.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861607|gb|ACS59273.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 222 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 130/222 (58%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA + L+ + + + GED L K E+ A+ILDL L + G Sbjct: 1 MRLLVVEDNKDLAAWLGKALRQAQYAIDIAHDGEDAEHLLKVAEYSAMILDLALPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV IL+ +S++ +V GL SGADDY++KPF EL ARIRA+VRR + Sbjct: 61 TLLKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S I G+L + + V G + LT +EY ++E L ++ T++K ++ Sbjct: 121 DRASSEITVGNLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKHGITVSKAALSESVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DE + I++++ +LRKKL +++ I T+ G GY+LR Sbjct: 181 FDDEADASAIEIYVHRLRKKLESSS---VQIATLRGLGYLLR 219 >gi|229590582|ref|YP_002872701.1| response regulator protein [Pseudomonas fluorescens SBW25] gi|229362448|emb|CAY49354.1| response regulator protein [Pseudomonas fluorescens SBW25] Length = 220 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL I L E + V G + FDA++LDLGL + G Sbjct: 1 MRLLLIEDDDALGGGIHQALAREGYTVDWLQDGNSALHALLSETFDAVVLDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV IL+ + ED++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 EVLRRLRDSGATVPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ +I + ++ + V G + LT KEYQ++ L +T++ + LY Sbjct: 121 GRARVVIEHAGICLDPSTQQVSYHGVPVLLTPKEYQLLHELLSPPGRVMTRDQLMQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E E ++V I LRKK S+ I TV G GY++ E Sbjct: 181 WNEEAESNTLEVHIHHLRKKFSS-----ELIRTVRGVGYLVEE 218 >gi|196228357|ref|ZP_03127224.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227760|gb|EDY22263.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 226 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ +A I + LK+E F V G+ G+++ +D +I+DL L +I G Sbjct: 1 MRILLVEDEEKVARFITVGLKAERFAVDTARDGKTGLQMASLNPYDLLIVDLMLPEINGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++R +R P+ +L+ ++ DKV +SGADDY++KPF EL+ RI+A++RR Sbjct: 61 ELIRRVRKQNTDVPIVVLTARDALSDKVANFESGADDYLTKPFAFAELLVRIKALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I DL ++ A V G I LT KEY ++E L+ L++ M + H++D Sbjct: 121 VPRANVIQIADLEIDRLAHQVRRGGQSIKLTAKEYGLLEYLATNAGRVLSRTMIVEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV++ +LR K+ K I TV GYV+ EN Sbjct: 181 QSFEGLTNIVDVYVRQLRAKIDEPFDRK-LIHTVRSVGYVINENG 224 >gi|161523212|ref|YP_001578224.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348931|ref|YP_001944559.1| signal transduction response regulator [Burkholderia multivorans ATCC 17616] gi|160340641|gb|ABX13727.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189332953|dbj|BAG42023.1| signal transduction response regulator [Burkholderia multivorans ATCC 17616] Length = 225 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E+F V GE + K +DA++LD+ L I G Sbjct: 1 MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +V GDL + + L +E+ ++E L L++N T++K ++ ++ Sbjct: 121 GVGSTQLVCGDLVYAFGTREFRCGDAPLVLRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 DEP ID++I +LRK L A I T+ G GY+LR A Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AASSAEIITLRGLGYILRAKA 222 >gi|197336013|ref|YP_002156198.1| FeuP [Vibrio fischeri MJ11] gi|197317503|gb|ACH66950.1| FeuP [Vibrio fischeri MJ11] Length = 218 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 133/224 (59%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L I L+S + +V +L +DG++ E+DAI+LDLGL + Sbjct: 1 MKILVVEDDLRLGEQIVETLESAD---WVPELSQDGVDALYRATTEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+++R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 NGLTVLKSIRDENINTPVIILSARDTLSQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ + V Q + LT EY+++ + +++ + H Sbjct: 118 RASGNASPILKIGDLSLDTRSSKVLWQDQAVSLTALEYKVVAYFMHNPDKVISRTTLVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + ++VFI ++RKK++ N I+TV G GY L Sbjct: 178 IYKQDFDRDSNTVEVFIGRIRKKIA-----PNIIKTVRGLGYQL 216 >gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232] gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232] Length = 228 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|254246631|ref|ZP_04939952.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124871407|gb|EAY63123.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 225 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E+F V GE + K +DA++LD+ L I G Sbjct: 1 MKLLLVEDNAELAHWIVNLLRGEDFAVDSVGDGERADTVLKTERYDAVLLDMRLPGISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +V GDL + + L +E+ ++E L L++N T++K ++ ++ Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DEP ID++I +LRK L AG I T+ G GY+LR Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AGSTAEIITLRGLGYILR 219 >gi|15641643|ref|NP_231275.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591202|ref|ZP_01678505.1| DNA-binding response regulator [Vibrio cholerae 2740-80] gi|121728924|ref|ZP_01681931.1| DNA-binding response regulator [Vibrio cholerae V52] gi|147675175|ref|YP_001217188.1| DNA-binding response regulator [Vibrio cholerae O395] gi|153216915|ref|ZP_01950679.1| DNA-binding response regulator [Vibrio cholerae 1587] gi|153801571|ref|ZP_01956157.1| DNA-binding response regulator [Vibrio cholerae MZO-3] gi|153819736|ref|ZP_01972403.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457] gi|153823944|ref|ZP_01976611.1| DNA-binding response regulator [Vibrio cholerae B33] gi|153826176|ref|ZP_01978843.1| DNA-binding response regulator [Vibrio cholerae MZO-2] gi|153830672|ref|ZP_01983339.1| DNA-binding response regulator [Vibrio cholerae 623-39] gi|227081790|ref|YP_002810341.1| DNA-binding response regulator [Vibrio cholerae M66-2] gi|229508249|ref|ZP_04397754.1| DNA-binding response regulator [Vibrio cholerae BX 330286] gi|229511512|ref|ZP_04400991.1| DNA-binding response regulator [Vibrio cholerae B33] gi|229515034|ref|ZP_04404494.1| DNA-binding response regulator [Vibrio cholerae TMA 21] gi|229518651|ref|ZP_04408094.1| DNA-binding response regulator [Vibrio cholerae RC9] gi|229520763|ref|ZP_04410186.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80] gi|229523733|ref|ZP_04413138.1| DNA-binding response regulator [Vibrio cholerae bv. albensis VL426] gi|229529329|ref|ZP_04418719.1| DNA-binding response regulator [Vibrio cholerae 12129(1)] gi|229607823|ref|YP_002878471.1| DNA-binding response regulator [Vibrio cholerae MJ-1236] gi|254226103|ref|ZP_04919700.1| DNA-binding response regulator [Vibrio cholerae V51] gi|254285418|ref|ZP_04960383.1| DNA-binding response regulator [Vibrio cholerae AM-19226] gi|254848758|ref|ZP_05238108.1| DNA-binding response regulator [Vibrio cholerae MO10] gi|255744933|ref|ZP_05418883.1| two-component system response regulator QseB [Vibrio cholera CIRS 101] gi|262161782|ref|ZP_06030800.1| two-component system response regulator QseB [Vibrio cholerae INDRE 91/1] gi|262169653|ref|ZP_06037344.1| two-component system response regulator QseB [Vibrio cholerae RC27] gi|262190570|ref|ZP_06048811.1| two-component system response regulator QseB [Vibrio cholerae CT 5369-93] gi|297579217|ref|ZP_06941145.1| DNA-binding response regulator [Vibrio cholerae RC385] gi|298498279|ref|ZP_07008086.1| DNA-binding response regulator [Vibrio cholerae MAK 757] gi|9656150|gb|AAF94789.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546957|gb|EAX57105.1| DNA-binding response regulator [Vibrio cholerae 2740-80] gi|121628810|gb|EAX61272.1| DNA-binding response regulator [Vibrio cholerae V52] gi|124114064|gb|EAY32884.1| DNA-binding response regulator [Vibrio cholerae 1587] gi|124122898|gb|EAY41641.1| DNA-binding response regulator [Vibrio cholerae MZO-3] gi|125621338|gb|EAZ49675.1| DNA-binding response regulator [Vibrio cholerae V51] gi|126509727|gb|EAZ72321.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457] gi|126518538|gb|EAZ75761.1| DNA-binding response regulator [Vibrio cholerae B33] gi|146317058|gb|ABQ21597.1| DNA-binding response regulator [Vibrio cholerae O395] gi|148873852|gb|EDL71987.1| DNA-binding response regulator [Vibrio cholerae 623-39] gi|149740117|gb|EDM54282.1| DNA-binding response regulator [Vibrio cholerae MZO-2] gi|150424690|gb|EDN16626.1| DNA-binding response regulator [Vibrio cholerae AM-19226] gi|227009678|gb|ACP05890.1| DNA-binding response regulator [Vibrio cholerae M66-2] gi|227013546|gb|ACP09756.1| DNA-binding response regulator [Vibrio cholerae O395] gi|229333103|gb|EEN98589.1| DNA-binding response regulator [Vibrio cholerae 12129(1)] gi|229337314|gb|EEO02331.1| DNA-binding response regulator [Vibrio cholerae bv. albensis VL426] gi|229342318|gb|EEO07313.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80] gi|229343340|gb|EEO08315.1| DNA-binding response regulator [Vibrio cholerae RC9] gi|229347739|gb|EEO12698.1| DNA-binding response regulator [Vibrio cholerae TMA 21] gi|229351477|gb|EEO16418.1| DNA-binding response regulator [Vibrio cholerae B33] gi|229355754|gb|EEO20675.1| DNA-binding response regulator [Vibrio cholerae BX 330286] gi|229370478|gb|ACQ60901.1| DNA-binding response regulator [Vibrio cholerae MJ-1236] gi|254844463|gb|EET22877.1| DNA-binding response regulator [Vibrio cholerae MO10] gi|255737404|gb|EET92799.1| two-component system response regulator QseB [Vibrio cholera CIRS 101] gi|262021887|gb|EEY40597.1| two-component system response regulator QseB [Vibrio cholerae RC27] gi|262028514|gb|EEY47169.1| two-component system response regulator QseB [Vibrio cholerae INDRE 91/1] gi|262033557|gb|EEY52054.1| two-component system response regulator QseB [Vibrio cholerae CT 5369-93] gi|297536811|gb|EFH75644.1| DNA-binding response regulator [Vibrio cholerae RC385] gi|297542612|gb|EFH78662.1| DNA-binding response regulator [Vibrio cholerae MAK 757] gi|327484248|gb|AEA78655.1| Two-component system response regulator QseB [Vibrio cholerae LMA3894-4] Length = 219 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 129/227 (56%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L I L+ +V +L +DGI+ E+D I+LDLGL + Sbjct: 1 MKILVVEDDVQLGQQILSALEQTG---WVPELAQDGIDALYRATAEEWDVIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ V QG + LT EY++I +++ + H Sbjct: 118 RASGNASPVMQVGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y + + I+VFI ++RKK++ + I+TV G GY L N Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PDVIKTVRGLGYQLHAN 219 >gi|226308071|ref|YP_002768031.1| two-component response regulator PrrA [Rhodococcus erythropolis PR4] gi|229488493|ref|ZP_04382359.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] gi|226187188|dbj|BAH35292.1| two-component response regulator PrrA [Rhodococcus erythropolis PR4] gi|229323997|gb|EEN89752.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] Length = 234 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + S+E L+ F V G D + + DA++LD+ + + G Sbjct: 6 KILVVDDDADVLTSLERGLRLSGFTVLTAVDGADALRVISDKRPDAVVLDINMPVLDGTG 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ ALR A P+C+LS +S++D++ GL+SGADDY+ KPF ELVARIRA++RRS Sbjct: 66 VVTALRAAGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAMLRRSNT 125 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A + + G+L ++L + V V G + LT +E++++E+L+ LT+E L Sbjct: 126 PAGDHSEGTNTLRVGNLDIDLSGRRVRVDGKEVPLTKREFELLEVLAHNSGIVLTRERLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + ++DVFI LR+K + G + TV G G+VLREN Sbjct: 186 ELVWGYDFVADTNVVDVFIGYLRRKFE-SGGSPRLLHTVRGVGFVLRENP 234 >gi|217976623|ref|YP_002360770.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217501999|gb|ACK49408.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 236 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L I L+ + V GE+G L +D ++LDLGL G Sbjct: 1 MRLLVVEDDKDLNRQIVSALERAGYAVDRAFDGEEGWFLGDTEPYDGVVLDLGLPGKDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ +KV+G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 TVLSDWRKAGRVMPVLILTARDRWGEKVKGFDAGADDYVTKPFHIEELLARLRALMRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S+ G +S + V V+G + LT EY+++ L + +++ + HLYD Sbjct: 121 GHASSVFSCGPVSFDERGGKVSVEGQPVKLTSHEYRLLGYLMHHQGKIVSRAEIVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + I+VF+ +LRKKL G + I T+ G GY+L D+ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL-----GVDVIHTMRGLGYILAPPTADDGA 225 >gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 224 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 133/224 (59%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+++LA +EL LK E + V + G G+E+ +D I+LDL L + G EV Sbjct: 4 ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLEVALETNYDLILLDLMLPGLNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R LR K +TP+ +L+ SI D+V GL SGADDY+ KPF EEL+AR+R I RR Sbjct: 64 CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEHI 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H SL DL + ++++T+ I LT KE++++ + N LT+++ LN + Sbjct: 123 ENKHVSSLTFK-DLQLQIESRTITKGNEEIELTNKEFELLLMFMKNVNRVLTRDVLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E I+DV++ LR KL ++ + YI+TV G GY+++ Sbjct: 182 WGYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224 >gi|171320020|ref|ZP_02909092.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171094747|gb|EDT39789.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 221 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L + FD ++LD L + GF Sbjct: 1 MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 AVLRNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L ++ ++ E+ G + L+ +E+ ++E+L+ R +K+ LN L+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++R+KL G I T G GY Sbjct: 181 FGNEPSANAVEQYVTRVRRKLQ---GSSVEIRTARGMGY 216 >gi|170722192|ref|YP_001749880.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760195|gb|ACA73511.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 220 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL I L+ E + + G G+ + FD +ILDLGL + G Sbjct: 1 MRLLLVEDDTALGEGICDGLRQEGYTLDWLRDGLSGLHALQHEMFDLVILDLGLPRLGGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR S PV IL+ + ED++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 ELLRRLRAGGDSLPVLILTARDATEDRITGLDAGADDYLVKPFDLNELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI +S++ + V G + LT KEY+++ L + T+E LY Sbjct: 121 GRAKVLIEHAGVSLDPATQQVHYNGVPVVLTPKEYRLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +EPE ++V I LRKKL N I TV G GY++ Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLV 216 >gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 229 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 137/228 (60%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I+ L+ + V G++ EL ++D I+LD+ L ++ GFE Sbjct: 4 KVLVVDDEKLIVKGIKFSLEQDGMEVTAAYDGKEAYELAMQNDYDIILLDVMLPELNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ DK+ GL+ GADDY++KPFN E+ ARI+AI+RR++G Sbjct: 64 VCQMIR-EKSDVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAIIRRTKG 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A+ IV+G++ ++LD++ V + ++LT KE+ ++ELL N +E LN Sbjct: 123 RKQEQPAERTIVSGEMRIDLDSRRVFIGDREVNLTAKEFDLLELLITNPNKVFNRENLLN 182 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ G D P +V+ +DV + +LR+K+ + YI T WG GY ++ Sbjct: 183 LVW-GYDYPGDVRTVDVHVRRLREKIEASPSEPKYIHTKWGVGYFFQK 229 >gi|289648792|ref|ZP_06480135.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae pv. aesculi str. 2250] Length = 220 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+LL+EDD+A+ I + L +E Y D EDG+ + L L +P Sbjct: 1 MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF++LR LR +++ PV IL+ D++ GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G AQ L+ +S++ ++ V QG + +T EYQ++ L +R +T+E N Sbjct: 118 RSQGRAQPLLEDAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNT 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY +D+ E ++V I LRKKLS I TV G GY+L Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216 >gi|325272764|ref|ZP_08139111.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324102104|gb|EGB99603.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 225 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + Y FD I+DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIIDLGLPGISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L + K+ + LY Sbjct: 121 GFTQSTIAAGPLVLDLNRKQASLDAQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G +E + +I+V I +LR+KL G K I+TV G GY+ E + Sbjct: 181 GDEERDPNVIEVLIGRLRRKLEGEQGFKP-IDTVRGLGYLFTERCR 225 >gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] Length = 228 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 135/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K LA + L L+ E + V V G +G+E +FD I+LDL L ++ GFE Sbjct: 4 KILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + A + V DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DMPGRESYIQTVRGMGYVIRE 227 >gi|221067645|ref|ZP_03543750.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220712668|gb|EED68036.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 221 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED + LA ++ L+SE Y D DG+ KF Y +DAIILDL L + Sbjct: 1 MRVLIVEDSQTLAEALSQSLQSEG---YACDTAADGVSALKFLASYRYDAIILDLMLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VLRAL + PV +LS ++D+VR L +GADDY++KPF EL+AR+RA+VR Sbjct: 58 DGFGVLRALGREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ GDL V+ ++ + + LT KEY +++LL R+ TL++ H Sbjct: 118 RPPQRDVPVLRHGDLEVDPRSRIARFKCIDLGLTPKEYGLLDLLLRRRGATLSRSQIFEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LYD R + K+++V + LR KL+ G I T G GY+L Sbjct: 178 LYDSRSDASDKVVEVIVSTLRTKLA-LCGLDELIVTRRGFGYIL 220 >gi|160877446|ref|YP_001556762.1| two component transcriptional regulator [Shewanella baltica OS195] gi|217975283|ref|YP_002360034.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304412081|ref|ZP_07393691.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307305976|ref|ZP_07585722.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|160862968|gb|ABX51502.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|217500418|gb|ACK48611.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304349631|gb|EFM14039.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911469|gb|EFN41895.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315269648|gb|ADT96501.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 231 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 125/208 (60%), Gaps = 1/208 (0%) Query: 24 NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83 ++++ V GE+G+ Y +DA I+D+GL + G ++R++R + P+ IL+ S Sbjct: 24 HYSIDVASDGEEGLFQALEYNYDAAIIDVGLPKLDGIALIRSVREQERDFPILILTARDS 83 Query: 84 IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143 +DKV GL +GADDY++KPF+ +ELVAR++A++RRS G A LI G S+N + V Sbjct: 84 WQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSAGKASPLIYNGPFSLNTSSLEVRK 143 Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 ++L+G EY++ E L + +K + H+YD + + +I+VFI +LRKKL + Sbjct: 144 GEELVNLSGSEYKLFEFFMLHQGEVKSKTVLTEHIYDQDFDLDSNVIEVFIRRLRKKL-D 202 Query: 204 AAGGKNYIETVWGRGYVLRENAKDETCE 231 N IET+ G+GY L+ + T + Sbjct: 203 PDNQYNLIETLRGQGYRLKALTPEPTAD 230 >gi|49081832|gb|AAT50316.1| PA1179 [synthetic construct] Length = 226 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L + V E+ + Y D ++DLGL + G Sbjct: 1 MKLLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR S P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K V+ + LT EY+++E L + KE + LY Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E + +I+V + +LR+KL A GG I+TV G+GY+ E + Sbjct: 181 DDEERDANVIEVLVGRLRRKL-EACGGFKPIDTVRGQGYLFTERCR 225 >gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI R Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRLQDI 122 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI R Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRSQDI 122 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|254712082|ref|ZP_05173893.1| DNA-binding response regulator [Brucella ceti M644/93/1] gi|254715152|ref|ZP_05176963.1| DNA-binding response regulator [Brucella ceti M13/05/1] gi|261216863|ref|ZP_05931144.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261319730|ref|ZP_05958927.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|260921952|gb|EEX88520.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261292420|gb|EEX95916.1| two component transcriptional regulator [Brucella ceti M644/93/1] Length = 225 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 127/224 (56%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57 MRI+LIEDD L ++ + +E V +V+ D D +E ++ D ++LDL L D Sbjct: 1 MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARY---DLVLLDLMLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G LR LR STPV IL+ + I D+++GL +GADDY++KPF+ EL AR+ A+ R Sbjct: 58 QGLSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G+ LI G L ++L AK+V G + LT +E+ ++E TL+K F H Sbjct: 118 RYSGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQFEEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY E E ++V + +LRKKL +A IETV G GY L Sbjct: 178 LYSFDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216 >gi|153854307|ref|ZP_01995606.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814] gi|149753082|gb|EDM63013.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814] Length = 242 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 132/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L + ++ L E+++V G + ++ +D IILD+ L G+ Sbjct: 19 MRLLIVEDENDLRNIVKKRLVKEHYSVDACGDGLEAMDYIDMTSYDGIILDIMLPGKDGY 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR + TPV +L+ SIED+V+GL GADDY+ KPF EEL+ARIR ++RR Sbjct: 79 EILRELRRREDDTPVLLLTAKDSIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 138 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++ D + V G+ I L+ KE+ ++E L KN +T++ + +D Sbjct: 139 QFTSNQLKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQNAWD 198 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +IDV+I LRKK+ +A + I TV G GYV+REN Sbjct: 199 FDFEGGSNVIDVYIRYLRKKI-DAQYEQKLIHTVRGVGYVMREN 241 >gi|296282536|ref|ZP_06860534.1| transcriptional activator protein copR [Citromicrobium bathyomarinum JL354] Length = 227 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL +EDD A +E +++ E + V G DG++ FD I++D L D G Sbjct: 1 MKILYVEDDPRAAREMEDIVRREGDTIAVETNGADGLKRAGLESFDVIVMDRMLGDADGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + ISTP+ +LS + ++ GL++GADDY++KPF ELVAR+RA+ RR+ Sbjct: 61 DIIRRLRGSAISTPILMLSALGRTSERAEGLEAGADDYLAKPFEAIELVARVRALHRRAS 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S +I+ G ++ A+T I L+ +E+++ +T+EM L ++ Sbjct: 121 GREHSAVILFGAFECHVKARTAFRDNRHIPLSPREFELFRYFMENAGEVVTREMLLRDVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P+ ++DV I +LR+KL +ETVWG GY L Sbjct: 181 NMSFDPQTNVVDVNIGRLRRKLEEGFDSP-ALETVWGTGYRL 221 >gi|256850843|ref|ZP_05556232.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260661054|ref|ZP_05861968.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|282934486|ref|ZP_06339741.1| response regulator ArlR [Lactobacillus jensenii 208-1] gi|297205717|ref|ZP_06923112.1| response regulator [Lactobacillus jensenii JV-V16] gi|256615905|gb|EEU21093.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260547991|gb|EEX23967.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|281301433|gb|EFA93722.1| response regulator ArlR [Lactobacillus jensenii 208-1] gi|297148843|gb|EFH29141.1| response regulator [Lactobacillus jensenii JV-V16] Length = 240 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 136/232 (58%), Gaps = 11/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA ++L L+ E + V + G G++L +FDAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVNI 121 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + Q ++ DL++ + V I LT +EY ++ L KN +++E Sbjct: 122 EKKVSSNAAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LN ++ E +++V++ LR K+ +A +YI+TV G GY++RE+ Sbjct: 182 QLLNKIWGPDSNIETNVVEVYVRYLRNKI-DAPDRPSYIKTVRGTGYMVRED 232 >gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 224 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K + I+ L+ E + V GE+G+++ FD +ILD L + G Sbjct: 1 MRILVVEDEKKVLSFIKRGLEEEQYEVVTAGDGEEGLKMAMEKNFDLLILDWMLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ L+ K +TPV +L+ S+ED V GL SG+DDY++KPF EL+AR+RA++RRS Sbjct: 61 SVLKELKSQKNTTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V + I LT KEY ++E + LT+ M H++D Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IIDV++ LRKK+ A K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRDA-DKKLIHTVRGVGYILKE 222 >gi|254249049|ref|ZP_04942369.1| Response regulator [Burkholderia cenocepacia PC184] gi|124875550|gb|EAY65540.1| Response regulator [Burkholderia cenocepacia PC184] Length = 221 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L + FD ++LD L + GF Sbjct: 1 MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L ++ ++ E+ G + L+ +E+ ++E+L+ R +KE LN L+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++RKKL G I T G GY Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQ---GSSVEIRTARGMGY 216 >gi|170720384|ref|YP_001748072.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169758387|gb|ACA71703.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + + FD ++DLGL + G Sbjct: 1 MKLLVVEDEALLRHHLYTRLGESGHVVQAVADAEEALYQAEQFHFDLAVIDLGLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 ELIGRLRTQAKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L + KE + LY Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G +E + +I+V + +LR+KL A G K I+TV G GY+ E + Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEGARGFKP-IDTVRGLGYLFTERCR 225 >gi|170703189|ref|ZP_02893997.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|172062527|ref|YP_001810178.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|170131903|gb|EDT00423.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171995044|gb|ACB65962.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 221 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L + FD ++LD L + GF Sbjct: 1 MRILVVEDDAEIGAAIRSRLTRLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 AVLRNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L ++ ++ E+ G + L+ +E+ ++E+L+ R +K+ LN L+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++R+KL G I T G GY Sbjct: 181 FGNEPSANAVEQYVTRVRRKLQ---GSSVEIRTARGMGY 216 >gi|290352199|dbj|BAI78810.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL ADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRSADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|239831448|ref|ZP_04679777.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823715|gb|EEQ95283.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 235 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 7 LRILIVEDDKDLNRQLAEAMAAAGYVVDRAYDGEEGHHLGDTEPYDAVVLDIGLPRMDGI 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 67 SVVERWRRSGRAMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S +V G L ++ + G + LT EY+++ L + +++ + HLYD Sbjct: 127 GHASSELVCGPLYLDTKTSKASINGVALKLTSHEYRLLSYLMHHMDEVVSRTELVEHLYD 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ G + IETV G GY +R ET Sbjct: 187 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRIRSEGGGET 230 >gi|229589618|ref|YP_002871737.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229361484|emb|CAY48360.1| putative two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 222 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA + L+ + + V G D + + +D IILDLGL +PG Sbjct: 1 MRLLLVEDNVPLADELLAGLQRQGYAVDWLADGRDAVYQGRSEPYDLIILDLGLPGLPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R A ++ PV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLAQWRAAALAIPVLILTARDSWAERIEGLKAGADDYLAKPFHPEELYLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q + L ++ + V G I LT E++++ L L+K HLY Sbjct: 121 GQTNQPTLQAAGLHLDEGRQCVLRDGAEIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DG E + +++V + LR+KL G++ IET G+GY N Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYRFGAN 220 >gi|319944417|ref|ZP_08018691.1| transcriptional regulator FeuP [Lautropia mirabilis ATCC 51599] gi|319742378|gb|EFV94791.1| transcriptional regulator FeuP [Lautropia mirabilis ATCC 51599] Length = 237 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MR+L++EDD+ LA S+++ L+ V +L DG E L +DA +LDLGL ++ Sbjct: 1 MRVLIVEDDRELAQSLKVALEESGM---VAELAVDGQEASFLGSTERYDAAVLDLGLPEL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ R + PV IL+G DK+ G +GADDY++KPF EE+V R+RA+VR Sbjct: 58 DGISVLKQWREQGCNFPVLILTGRGRWSDKLAGFGAGADDYLTKPFMHEEVVVRLRALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ GHA ++ G LS + ++G R+ T +E +++ L + L++ + H Sbjct: 118 RAYGHADPVLQVGPLSYDTLQGRFSMEGRRLAFTAQEERILAYLMHQPGVVLSRTDIVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y +P+ +DV I ++R+KL G + I TV GRG+VL Sbjct: 178 VYARDSDPDSNALDVLIGRIRRKL-----GVSMIRTVRGRGFVL 216 >gi|145297360|ref|YP_001140201.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142850132|gb|ABO88453.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 218 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 132/226 (58%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL++ED+K LA + L+ F VTDL DG E L + +DAIILDLGL Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGF---VTDLCHDGNEAGFLGETEPYDAIILDLGLPGR 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ R I TPV +L+ + +K+ GL +GADDY++KPF ELVAR++A+VR Sbjct: 58 DGLSVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A S++ G + +++ A V +G I LT E++++ L + +++ ++H Sbjct: 118 RAAGNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +Y + + ++VFI ++RKK + IETV G GY + E Sbjct: 178 IYAQDFDRDSNTVEVFIGRIRKKTH-----ADLIETVRGLGYRINE 218 >gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] Length = 228 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K LA + L L+ E + V V G +G+E +FD I+LDL L ++ GFE Sbjct: 4 KILIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + A + V DL +N ++V I LT +EY ++ +L N +T+E L+ Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDEEISLTKREYDLLNILMTNMNRVMTREELLSS 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DMPGRESYIQTVRGMGYVIRE 227 >gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982322|gb|AAR33783.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298504564|gb|ADI83287.1| winged-helix transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 224 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 129/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K ++ I+ L+ E + V GE+G+++ +D I+LD+ L G Sbjct: 1 MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKGYDLIVLDVMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR K STPV +L+ S+ED V GL SG+DDY++KPF EL+AR+RA+VRRS Sbjct: 61 SVVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V + I LT KEY ++E N LT+ M H++D Sbjct: 121 QDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IIDV++ LRKK+ + K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRES-DKKLIHTVRGVGYILKE 222 >gi|153002710|ref|YP_001368391.1| two component transcriptional regulator [Shewanella baltica OS185] gi|151367328|gb|ABS10328.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] Length = 231 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 125/208 (60%), Gaps = 1/208 (0%) Query: 24 NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83 ++++ V GE+G+ Y +DA I+D+GL + G ++R++R + P+ IL+ S Sbjct: 24 HYSIDVASDGEEGLFQALEYNYDAAIIDVGLPKLNGIALIRSVREQERDFPILILTARDS 83 Query: 84 IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143 +DKV GL +GADDY++KPF+ +ELVAR++A++RRS G A LI G S+N + V Sbjct: 84 WQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSAGKASPLIYNGPFSLNTSSLEVRK 143 Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 ++L+G EY++ E L + +K + H+YD + + +I+VFI +LRKKL + Sbjct: 144 GEELVNLSGSEYKLFEFFMLHQGEVKSKTVLTEHIYDQDFDLDSNVIEVFIRRLRKKL-D 202 Query: 204 AAGGKNYIETVWGRGYVLRENAKDETCE 231 N IET+ G+GY L+ + T + Sbjct: 203 PDNQYNLIETLRGQGYRLKALTPEPTAD 230 >gi|71737739|ref|YP_275609.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. phaseolicola 1448A] gi|298487905|ref|ZP_07005945.1| DNA-binding response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71558292|gb|AAZ37503.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157630|gb|EFH98710.1| DNA-binding response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325046|gb|EFW81115.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320327849|gb|EFW83855.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330988750|gb|EGH86853.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. lachrymans str. M301315] Length = 220 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+LL+EDD+A+ I + L +E Y D EDG+ + L L +P Sbjct: 1 MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF++LR LR +++ PV IL+ D++ GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G AQ L+ +S++ ++ V QG + +T EYQ++ L +R +T+E N Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNT 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY +D+ E ++V I LRKKLS I TV G GY+L Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216 >gi|85715363|ref|ZP_01046345.1| two component transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85697784|gb|EAQ35659.1| two component transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 223 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLATALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++AR+RA++RRS Sbjct: 61 SVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVTKPFHLEEILARMRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G ++++ V V G+ I +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGPVTLDTRTGRVSVGGNPIKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ ++RKKL + I+TV G GY+L A Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLLTPPAN 221 >gi|238918470|ref|YP_002931984.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri 93-146] gi|238868038|gb|ACR67749.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri 93-146] Length = 219 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 126/222 (56%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LLIEDD+ + I+ L F V + TD G+ G+ +DA+ILDL L I G Sbjct: 1 MRVLLIEDDRLIGDGIKAGLSKMGFTVDWFTD-GQQGMTALDSAPYDAVILDLSLPGIDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+LR R A + PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR+ Sbjct: 60 LEILRCWREAGHAEPVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIRRN 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G AQ+L+ G +S++ + T + G + L KE+ ++ELL L + + LY Sbjct: 120 HGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE ++V I LR+KL G ++I TV G GY L Sbjct: 180 SWDDEVSSNAVEVHIHHLRRKL-----GSHFIRTVHGVGYTL 216 >gi|123440802|ref|YP_001004793.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087763|emb|CAL10549.1| two-component system response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 219 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ L I + L S + L ++ +ILDLGL D G Sbjct: 1 MKLLIVEDDELLQRGIAMALTSGGYACDCAGTAAQAHSLLLSSQYSMVILDLGLPDQDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R I+ PV IL+ ++ED+V GL +GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 VLLRQWRRQHITLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +LI DLS+NL + V +QG + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GQSDNLIQQDDLSLNLSTQQVCLQGQALEVTPKEFAILSRLIMRAGQTVNRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LR+KL GK+ I TV G GY L Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRL 216 >gi|59712003|ref|YP_204779.1| DNA-binding response regulator [Vibrio fischeri ES114] gi|59480104|gb|AAW85891.1| DNA-binding response regulator [Vibrio fischeri ES114] Length = 218 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 133/224 (59%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L I L+S + +V +L +DG++ E+DAI+LDLGL + Sbjct: 1 MKILVVEDDLRLGAQIVETLESAD---WVPELSQDGVDALYRATTEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+++R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 NGLTVLKSIRDENINTPVIILSARDTLSQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ + V Q + LT EY+++ + +++ + H Sbjct: 118 RASGNASPILKIGDLSLDTRSSKVLWQDQAVSLTALEYKVVAYFMHNPDKVISRTTLVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + ++VFI ++RKK++ N I+TV G GY L Sbjct: 178 IYKQDFDRDSNTVEVFIGRIRKKIA-----PNIIKTVRGLGYQL 216 >gi|330503679|ref|YP_004380548.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328917965|gb|AEB58796.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 222 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 122/220 (55%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D +D IILDLGL PG Sbjct: 1 MRLLLVEDHVPLADELTASLARQGYAVDWLADGRDAAYQGASEPYDLIILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV +L+ S +++ GL++GADDY++KPF+ EEL RI+A++RR+ Sbjct: 61 EVLQEWRAGGLATPVLVLTARGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + L ++ + V G I LT E++++ L L+K +HLY Sbjct: 121 GLANQPQLEAAGLQLDESRQCVTSGGEAIDLTAAEFRLLRYFMLHPGQILSKSHLADHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG E + +I+V + +LR KL G+N IET G+GY Sbjct: 181 DGETERDSNVIEVHVNRLRGKL-----GRNVIETRRGQGY 215 >gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1] Length = 220 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL I L E + V G + FD +LDLGL + G Sbjct: 1 MRLLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSENFDLAVLDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV IL+ + ED++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 EVLRRLRGSGSNLPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ LI +S+N + V G + LT KEYQ++ L +T++ LY Sbjct: 121 GRAQMLIEHAGISLNPGTQQVSYLGQPVVLTPKEYQLLHELLSPPGRVMTRDHLTQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E E ++V I LRKK S + I T+ G GY++ E Sbjct: 181 WNEEAESNTLEVHIHHLRKKFST-----DLIRTIRGVGYLVEE 218 >gi|15893941|ref|NP_347290.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023528|gb|AAK78630.1|AE007581_1 Response regulator (CheY-like receiver domain and HTH DNA binding domain) [Clostridium acetobutylicum ATCC 824] gi|325508068|gb|ADZ19704.1| Response regulator (CheY-like receiver domain and HTH DNA binding domain) [Clostridium acetobutylicum EA 2018] Length = 221 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L++EDD+ L+ ++ LK N ++ GEDG+ + +DA+ILD+ L + G Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R ISTPV +L+ + +D+V GL SGADDY+ KPF +EL AR+ A++RR+ Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL+++ AK+V+V I LT +EY ++ELL ++ E + H++ Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +I V I LR+K+ +GG+ IET+ G+GY L Sbjct: 181 DNDNQFSNVIRVHIANLRRKIK-CSGGETLIETLKGKGYRL 220 >gi|115360068|ref|YP_777206.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285356|gb|ABI90872.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 221 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L + FD ++LD L + GF Sbjct: 1 MRILVVEDDAEIGAAIRSRLTRLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L ++ ++ E+ G + L+ +E+ ++E+L+ R +K+ LN L+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++R+KL G I T G GY Sbjct: 181 FGNEPSANAVEQYVTRVRRKLQ---GSSVEIRTARGMGY 216 >gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ RIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLDRIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC 10782] gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC 10782] Length = 228 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARI AI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARISAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI R Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFSRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|238797820|ref|ZP_04641313.1| Two component heavy metal response transcriptional regulator, winged helix family [Yersinia mollaretii ATCC 43969] gi|238718348|gb|EEQ10171.1| Two component heavy metal response transcriptional regulator, winged helix family [Yersinia mollaretii ATCC 43969] Length = 230 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 135/223 (60%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + I L + F V + G DG+ L Y++D I+LD+ L + G+ Sbjct: 1 MRLLLVEDEEKTSSYIHRALTEQGFTVDIAATGTDGLYLALEYDYDTIVLDVMLPGMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL+ LR +K TPV +LS S++++V+GL+ GADDY+ KPF+ EL+ARI+A++RR Sbjct: 61 RVLKGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELIARIQALLRRRP 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S G + + DL ++L A+ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 SDGADVTQLHINDLHLDLLARRVTRGGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +++V I +LR K+ +A + TV G GYVL Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DAPYSLKLLHTVRGMGYVL 221 >gi|117618398|ref|YP_858477.1| two-component system, regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559805|gb|ABK36753.1| two-component system, regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 218 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 132/226 (58%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL++ED+K LA + L+ F VTDL DG E L + +DAIILDLGL Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGF---VTDLCHDGNEAGFLGETEPYDAIILDLGLPGR 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ R I TPV +L+ + +K+ GL +GADDY++KPF ELVAR+ A+VR Sbjct: 58 DGLSVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A S++ G + +++ A V +G I LT E++++ L + +++ ++H Sbjct: 118 RAAGNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +Y + + ++VFI ++RKK + + IETV G GY + E Sbjct: 178 IYAQDFDRDSNTVEVFIGRIRKKTHS-----DLIETVRGLGYRINE 218 >gi|290352169|dbj|BAI78795.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VCKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|289626740|ref|ZP_06459694.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648659|ref|ZP_06480002.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298487563|ref|ZP_07005605.1| Two-component system response regulator QseB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157947|gb|EFH99025.1| Two-component system response regulator QseB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330870522|gb|EGH05231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 222 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D I+LDLGL +PG Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV IL+ S +++ GL+SGADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKSGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + + L+++ ++V G I LT E++++ L L+K HLY Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG +E + +I+V + LR+KL G+ +ET G+GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216 >gi|77460461|ref|YP_349968.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384464|gb|ABA75977.1| two-component system, transcriptional regulatory protein PhoP [Pseudomonas fluorescens Pf0-1] Length = 225 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H ++ L V E+ + + FD ++DLGL + G Sbjct: 1 MKLLVVEDEALLRHHLQTRLTESGHVVESVANAEEALYQTGQFNFDLAVIDLGLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRSGGKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS IV G L ++L+ K + + LT EY+++E L + K+ + LY Sbjct: 121 GFTQSTIVAGPLLLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVPKDRLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL AG K I+TV G GY+ E Sbjct: 181 DDDERDPNVIEVLVGRLRRKLEGPAGFKP-IDTVRGLGYLFNE 222 >gi|116624553|ref|YP_826709.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116227715|gb|ABJ86424.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 229 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 3/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ +A + L+ + + V + GE + +D +ILD+ L G+ Sbjct: 1 MRILLVEDESRVAGFLAKGLREQAYAVDLAADGESALYQAAVNHYDLVILDVMLPLKNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR A S P+ +L+ SI+D+V GL SGADDY+ KPF+ +EL+AR+RA+ RRS Sbjct: 61 AVCRELRAAGFSAPILMLTARDSIDDRVAGLDSGADDYLVKPFDFKELLARLRALSRRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL+VN + VE G I LT KEY ++E L L ++ + +E H+++ Sbjct: 121 DPRPEALRVADLTVNTASHAVERGGRIISLTAKEYALLEFLMLNQDRVVGREAIAQHVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + +IDV+I +LR KL + G I T G GY+L AK E + Sbjct: 181 ETFDAFTNVIDVYIKRLRAKL-DGPGSPRLIHTRRGEGYIL--TAKPEAGD 228 >gi|322831204|ref|YP_004211231.1| transcriptional regulator [Rahnella sp. Y9602] gi|321166405|gb|ADW72104.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 220 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ L + L L SEN+ + L + ++ +ILDLGL D G Sbjct: 1 MKLLIVEDDELLRQGLTLALTSENYACDCASTAAEAQSLIQTSQYSLVILDLGLPDKDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R IS PV IL+ ++ED+V GL +GADDY+ KPF EL AR+RA++RR + Sbjct: 61 TLLRQWRRQSISLPVLILTARDALEDRVDGLDAGADDYLIKPFALVELQARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + I G+L +NL ++ + + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GQSDNQISVGNLKINLSSQQAYLNDAPVEVTPKEFAILSRLMMRAGQTVNRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D+ ++V + LR+KL GK I TV G GY L Sbjct: 181 WQDDLGSNTLEVHVHNLRRKL-----GKEVIRTVRGIGYRL 216 >gi|91778060|ref|YP_553268.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|187920547|ref|YP_001889579.1| two component heavy metal response winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|296157989|ref|ZP_06840822.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|307726131|ref|YP_003909344.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|91690720|gb|ABE33918.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] gi|187718985|gb|ACD20208.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|295891757|gb|EFG71542.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|307586656|gb|ADN60053.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 228 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 134/228 (58%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L + + V V GE+G+ L +++D I+LD+ L GF Sbjct: 1 MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMHLATEFDYDVIVLDVMLPKRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ALR+ K STPV +L+ + D+VRGL+ GADDY++KPF+ ELV R+ A+ RR+R Sbjct: 61 SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT KE+Q++ +L+ R+ L+K ++D Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAK 226 + +++ I +LR KL K + TV G GYVL RE A+ Sbjct: 180 VNFDSHTNVVETAIKRLRAKLDGPFPSK-LLHTVRGMGYVLEVREEAE 226 >gi|13476381|ref|NP_107951.1| two-component system, regulatory protein [Mesorhizobium loti MAFF303099] gi|14027142|dbj|BAB54096.1| two-component system, regulatory protein [Mesorhizobium loti MAFF303099] Length = 221 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L I L + V GE+G L +DA++LD+GL I G Sbjct: 1 MRVLVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G L ++ A +V G + LT E++++ L +++ + HLYD Sbjct: 121 GHASSELTCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ +LRKK+ G + IETV G GY +RE Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GIDMIETVRGMGYRMRE 218 >gi|90961498|ref|YP_535414.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90820692|gb|ABD99331.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 228 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K L+ +EL L+ E + V G G+EL ++DAI+LDL L ++ G + Sbjct: 3 RILIIEDEKNLSRFVELELQHEEYETEVCKNGRQGLELALDEDWDAILLDLMLPELNGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 ICRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVEL 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+ Q+ + DL++ + + V I LT +EY+++ L N L ++ L Sbjct: 122 ENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDTLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + E ++DV+I LR K+ + G +YI+TV G GYV+R Sbjct: 182 KKVWGYETQIETNVVDVYIRYLRNKI-DRPGEDSYIQTVRGTGYVMR 227 >gi|323529593|ref|YP_004231745.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] gi|323386595|gb|ADX58685.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 228 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 134/228 (58%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L + + V V GE+G+ L +++D I+LD+ L GF Sbjct: 1 MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMHLATEFDYDVIVLDVMLPKRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ALR+ K STPV +L+ + D+VRGL+ GADDY++KPF+ ELV R+ A+ RR+R Sbjct: 61 SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT KE+Q++ +L+ R+ L+K ++D Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAK 226 + +++ I +LR KL K + TV G GYVL RE A+ Sbjct: 180 VNFDSHTNVVETAIKRLRAKLDGPFPSK-LLHTVRGMGYVLEVREEAE 226 >gi|116251199|ref|YP_767037.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255847|emb|CAK06928.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 223 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 125/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPELDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S I+ G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGATLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LRKK+ G + IETV G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214 >gi|117920171|ref|YP_869363.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117612503|gb|ABK47957.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 227 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 4 MRILVVEDDLILSHHLKVQLSDLGNQVQVALTAKEGFFQATNYPIDVAIVDLGLPDQDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR + P+ IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 64 SLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I +G+L ++L AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 124 GFVKPVITSGELKLDLAAKQVTLANEVMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G N I T+ G+GY Sbjct: 183 GDKEGDPNTIEVMVSRLRKKLTR-DGIDNPIVTIRGQGY 220 >gi|91229001|ref|ZP_01262867.1| DNA-binding response regulator [Vibrio alginolyticus 12G01] gi|254230618|ref|ZP_04923975.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262394555|ref|YP_003286409.1| two-component system response regulator QseB [Vibrio sp. Ex25] gi|91187465|gb|EAS73803.1| DNA-binding response regulator [Vibrio alginolyticus 12G01] gi|151936858|gb|EDN55759.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262338149|gb|ACY51944.1| two-component system response regulator QseB [Vibrio sp. Ex25] Length = 219 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L I L+S +V +L +DGI+ E+DAI+LDLGL + Sbjct: 1 MKILVVEDDPRLGEQIIETLESTG---WVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ V QG + LT EY+++ +++ + H Sbjct: 118 RASGNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + I+VFI ++RKK++ I+TV G GY L Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216 >gi|283781006|ref|YP_003371761.1| two component transcriptional regulator, winged helix family [Pirellula staleyi DSM 6068] gi|283439459|gb|ADB17901.1| two component transcriptional regulator, winged helix family [Pirellula staleyi DSM 6068] Length = 223 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD L ++E L G+ G+E +FDA++LD+ L D G Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R I TPV +L+ + S++D+V GL SGADDY+ KPF EL+AR+ AI RR++ Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + G L ++L + V + LT E+ ++E L +T++M HL++ Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++V I +LR K+ + I+TV GRGYVLR Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGF-SEPLIQTVRGRGYVLR 221 >gi|300790441|ref|YP_003770732.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799955|gb|ADJ50330.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 131/221 (59%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ A ++ L +E F V G +G+ + +D ++LD+ L ++ G+ Sbjct: 1 MRLLIVEDEREFAETLRRGLVAEGFTADVAHTGREGLWRATEHAYDVVVLDIMLPELSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR A+ TPV +L+ D+ GADDY+SKPF+ L+AR+RA++RR Sbjct: 61 EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLIARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ A+TV RI LT +E+ ++E L R L+K L+H++D Sbjct: 121 PARPAVLEAGDLRLDPSARTVHRGQKRIELTAREFGLLEFLLRRTGAALSKNEILSHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V+I LR+K+ +A G + IETV G GY L Sbjct: 181 AHYDGDENVVEVYIGYLRRKI-DAPFGTHTIETVRGVGYRL 220 >gi|113969921|ref|YP_733714.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114047157|ref|YP_737707.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113884605|gb|ABI38657.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113888599|gb|ABI42650.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 227 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 4 MRILVVEDDLILSHHLKVQLSDLGNQVQVALTAKEGFFQATNYPIDVAIVDLGLPDQDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR + P+ IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 64 SLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I +G+L ++L AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 124 GFVKPVITSGELKLDLAAKQVTLGNEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G N I T+ G+GY Sbjct: 183 GDKEGDPNTIEVMVSRLRKKLTR-DGIDNPIATIRGQGY 220 >gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD ++A ++L L+ + V GE+G+ + D ++LD+ L + G Sbjct: 6 RILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFERLRPDVVVLDIMLPGMDGVG 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A TPV +L+ + DKV L GADDY++KPF EEL+AR+RA++RR G Sbjct: 66 VLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEELLARMRAVLRRVEG 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++ G L+V+ A+ V G + LT +EY ++ELL+ L++E L+ ++ Sbjct: 126 --EEVLRVGSLTVDTSAREVRRGGRAVALTAREYDLLELLARNGRRVLSREKILDRVWGE 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV++ LR+KL G+ I TV G GYVLRE+ Sbjct: 184 GAGVDPNVVDVYVGYLRRKLEGPGEGR-LIHTVRGVGYVLRED 225 >gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 234 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 135/228 (59%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ ++ L++E++ V G++ ++ + FD IILDL L + G + Sbjct: 3 KILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R KI TP+ IL+ + DK+ GL+ GADDY++KPF+ E++ARI+AI RRS+ Sbjct: 63 VTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQS 122 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ I G ++++ + GHR+ LT KE++++ + R TL+++ Sbjct: 123 QPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDAL 182 Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ G D P E +++D+ + LR K+ +Y++TV G GY + Sbjct: 183 LNGVW-GFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQM 229 >gi|325292348|ref|YP_004278212.1| two component response regulator [Agrobacterium sp. H13-3] gi|325060201|gb|ADY63892.1| two component response regulator [Agrobacterium sp. H13-3] Length = 223 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAI+LD+GL + G Sbjct: 1 MRILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R A + PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S +V G + ++ + V G + LT E++++ L +++ + H+YD Sbjct: 121 GHASSELVCGPVKLDTKSSKATVNGVTLKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LRKKL G + IET+ G GY ++ A Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL-----GVDLIETIRGLGYRMQAPA 220 >gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 219 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + LK+ F + T G + L +FD IILD+GL DI GFE Sbjct: 3 RILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGGQAVALAVQEDFDLIILDVGLPDIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 VL+ LR + TPV +L+ SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR +R + Sbjct: 63 VLQQLRGQGVGTPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDAT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + D+ ++L +T+ ++G + L+ +E+ + E L++E L+ ++ Sbjct: 123 GPDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAETFMRHPGQVLSREQLLSAVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +++V++ LR KL G+ +ETV G GY L Sbjct: 183 LDFDPGSNVVEVYVSYLRNKL-----GRQRVETVRGMGYRL 218 >gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 228 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 135/226 (59%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ + V GE+ + L K EFD I+LD+ L + GFE Sbjct: 4 KILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALAKSGEFDLILLDVMLPKLTGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ DK+ GL+ GADDY++KPFN E+ ARI+AI+RR++ Sbjct: 64 VCQQVREFS-DVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAIIRRTKK 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++LIV G++ ++ +++ V + ++LT KE+ M+ELL+L +N ++E LN Sbjct: 123 DRPEEQKNLIVKGEMKLDCESRRVFIGEREVNLTAKEFDMLELLALNQNKVYSREKLLNL 182 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G D P + + +DV I +LR+K+ + Y+ T WG GY R Sbjct: 183 VW-GYDYPGDARTVDVHIRRLREKIESHPSDPKYVHTKWGVGYYFR 227 >gi|319403885|emb|CBI77471.1| two-component system regulatory protein [Bartonella rochalimae ATCC BAA-1498] Length = 222 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L H + +K + GE L +DA+ILD+GL+ + G Sbjct: 1 MRILIVEDDRDLNHQLAKAIKDAGYVFDSAFNGEYAYFLGSTESYDAVILDIGLSGMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++ R S PV +L+ DKVRG+ +GADDY+ KPF+ EE++AR+RA++RRS Sbjct: 61 QVVKKWRKEGYSMPVLMLTVCDRWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G++ ++ V + G I LT E++++ L + ++K + HLYD Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFIDGQLIKLTSYEFRLLSYLMHHSDKVVSKTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+VF+ +LRKKL G + IETV G GY ++ Sbjct: 181 QDFDKDSNTIEVFVRRLRKKL-----GVDSIETVRGLGYRIK 217 >gi|170748302|ref|YP_001754562.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654824|gb|ACB23879.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 222 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +A I L+ + V GE + +DA++LDLGL + G Sbjct: 1 MRVLIVEDEPRIAADIRQGLERAGYVADVVADGEAAWFRAETETYDAMVLDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR A+++ PV IL+ ++V G+ +GADDY++KPF EELVAR+RAI+RR+ Sbjct: 61 GVLRRLRAAEVALPVLILTARDGWRERVEGIDAGADDYLAKPFRMEELVARLRAILRRTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G + ++ + V V G LT EY+++ L R + L+HL+ Sbjct: 121 GHAAPVLRAGAVELDTRTRAVSVDGRPAELTALEYRLLAFLLHRPGQVVPAGELLDHLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E ++ + +LR+KL G IET G+GY++ Sbjct: 181 VGTEREANALEALLTRLRRKL-----GPGVIETRRGQGYLI 216 >gi|58038870|ref|YP_190834.1| DNA binding response regulator [Gluconobacter oxydans 621H] gi|58001284|gb|AAW60178.1| DNA binding response regulator [Gluconobacter oxydans 621H] Length = 251 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 133/221 (60%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD ++A + L + + V G +G++ +FD +I+D L ++ G Sbjct: 29 RLLLIEDDDSIAAEVAEELTTRGYEVTRAATGVEGLDHACTGQFDLMIVDRMLPELDGLT 88 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ ++R +I+ PV +LS +S+++D+V GL++G DDY++KPF EEL AR+ A++RR Sbjct: 89 VIESVRAQRINIPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARLEALLRRPTD 148 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ G L ++L + V G I L +E++++E + R +T LT+ M L +++ Sbjct: 149 SRVTMLRVGPLEMDLIERRVFRNGQEIDLLPREFRLLEYMMRRPDTVLTRTMLLEDVWNY 208 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R P+ ++DV I KLR+K+ + G I ++ G G+ LR Sbjct: 209 RFVPQTNLVDVHIGKLRRKI-DVPGEPPLIHSIRGAGFSLR 248 >gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str. Paraca] gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 628 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 124/224 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ ML S+ + V V + G+ G E + +D ++LD+ L + G Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR P+ +L+ ++ +DKV+GL +GADDY+ KP + EL ARIRA++RRS Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S+ + ++ V G I +T KEY ++ELL + T + + L+ L+ Sbjct: 121 EGTSSVFTYEKMVLDTSTCDVTYNGKPIKVTPKEYGLLELLMGDRQRTYSIDKILDKLWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + I LR+KL A G +IETV+G GY L +N Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 8/127 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF---DAIILDLGLTDIP 58 R+++++DD + +I+ +L+ + + LG D + K E D ++LD+ + + Sbjct: 497 RVMIVDDDPQMLAAIQTLLQP--WGIQTITLG-DPRQFWKTLESSHPDLLVLDIEMPHLN 553 Query: 59 GFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G E+ + +R PV ++ + + + + Q+GADDY++KPF EL RI + Sbjct: 554 GIELCQIVRNDPRWRGIPVIFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRL 613 Query: 117 RRSRGHA 123 +R++ A Sbjct: 614 KRTQNLA 620 >gi|254510565|ref|ZP_05122632.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11] gi|221534276|gb|EEE37264.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11] Length = 226 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD+ I E + V V G +G+ FDAI+LD L + G Sbjct: 4 RLLIVEDDQDTRDFIAKGFGEEGYVVEVAADGREGLYHATDGGFDAIVLDRMLPGLDGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +++++R A + TPV +L+ MS+++++V+GL++GADDY+ KPF+ +EL ARI A++RR + Sbjct: 64 LIKSMRAAGLKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQE 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL ++L + V G I LT +E+Q++E RKN +++ M L ++D Sbjct: 124 AEETPTLICRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVWD 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P ++DV I KLR++L + G IETV G GY++ + Sbjct: 184 YHFDPNTNVVDVHISKLRRQL-DGDGADPVIETVRGAGYMVSDG 226 >gi|157962753|ref|YP_001502787.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847753|gb|ABV88252.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 79/200 (39%), Positives = 118/200 (59%), Gaps = 5/200 (2%) Query: 24 NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83 N+ V D GE G+ + Y +DA I+D+GL + G +++ LR I P+ IL+ S Sbjct: 24 NYTVDTADDGEIGLFQGREYNYDAAIIDVGLPKLDGIALIKELRALDIGFPILILTARDS 83 Query: 84 IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143 +DKV GL +GADDY++KPF+ EELVAR++A++RRS G A ++ G S+N + + Sbjct: 84 WQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSAGKASPIVSNGPFSLNTSSLEITK 143 Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKL-- 201 G I L+G EY++ E L +K + H+YD + + +I+VFI +LRKKL Sbjct: 144 SGETITLSGSEYKLFEYFMLHIGEVKSKTVLTEHIYDQDFDLDSNVIEVFIRRLRKKLDP 203 Query: 202 SNAAGGKNYIETVWGRGYVL 221 N G IET+ G+GY L Sbjct: 204 DNQLG---LIETLRGQGYRL 220 >gi|114326810|ref|YP_743967.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] gi|114314984|gb|ABI61044.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] Length = 226 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 133/227 (58%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 MRILL+EDDK +A I L+ V D G DG+ + FDAI+LD L I G Sbjct: 1 MRILLVEDDKDVAGFIVKGLREAGHTVEHRDNGRDGLFMAASENFDAIVLDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L LR ++TPV LS +S ++++V+GL++G DDY+SKPF EL+AR+ A+ RR Sbjct: 61 LRLLETLRSQDVNTPVLFLSALSGVDERVKGLKAGGDDYLSKPFAFSELLARVEALTRRG 120 Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A + +V DL ++L ++ V+ G +I L +E++++E L + +T+ M L + Sbjct: 121 KTDAPTTKLVVADLEMDLLSRGVKRGGQKIDLQPREFRLLEFLMRHADQVVTRTMLLEGV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV + +LR+K+ + I TV GY+LR + Sbjct: 181 WDYHFDPQTNVIDVHVSRLRQKVDKPF-TVSLIHTVRNAGYMLRADG 226 >gi|119897266|ref|YP_932479.1| two-component response regulatory protein [Azoarcus sp. BH72] gi|119669679|emb|CAL93592.1| probable two-component response regulatory protein [Azoarcus sp. BH72] Length = 228 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 128/221 (57%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD +A I LK + V G + FD +ILDLGL +PG Sbjct: 1 MRILLAEDDPVIADGIVRALKRGGYAVDHVGNGAEADTAVASQPFDLLILDLGLPRLPGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR K + PV IL+ +ED+VRGL +GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLKRLRARKSALPVLILTAQDGVEDRVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + V G+LS + + V++ G + L+ +E ++E+ LR ++K+ ++HL Sbjct: 121 GQPRCIEV-GNLSYDQADRVVKICGQVVELSAREIGLLEVFILRVGRLVSKDQLVDHLCG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKKL A+G + I TV G GY L Sbjct: 180 WGEEVSSNAIEVYVHRLRKKL-EASGVR--IVTVRGLGYCL 217 >gi|148259590|ref|YP_001233717.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|146401271|gb|ABQ29798.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] Length = 250 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 76/188 (40%), Positives = 119/188 (63%), Gaps = 1/188 (0%) Query: 34 EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQS 93 ++ ++L YE++A+++ + T F+++R LR + P+ ++ + ++ L++ Sbjct: 34 DEAVDLSHHYEYEAVVMRVFDTYRIEFDLIRRLRKSGFRAPIVAVANTLAESARLHILEA 93 Query: 94 GADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGK 153 G DD I + EE RI+ +RR+RG S + G++ VN++AK V V + +T K Sbjct: 94 GVDDLIVGAPSYEETFLRIQNHIRRNRGFQDSSLSVGNIEVNMNAKKVFVGAREVAVTKK 153 Query: 154 EYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIET 213 EYQ+IELL+LRK L+KE L+HLY G DEP KIIDVFICK+RKKL AA G++ + T Sbjct: 154 EYQIIELLALRKGCVLSKEAILDHLYGGLDEPNAKIIDVFICKIRKKLL-AADGQDVLVT 212 Query: 214 VWGRGYVL 221 WGRGY++ Sbjct: 213 NWGRGYMM 220 >gi|326402797|ref|YP_004282878.1| cell cycle response regulator CtrA [Acidiphilium multivorum AIU301] gi|325049658|dbj|BAJ79996.1| cell cycle response regulator CtrA [Acidiphilium multivorum AIU301] Length = 250 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 76/188 (40%), Positives = 119/188 (63%), Gaps = 1/188 (0%) Query: 34 EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQS 93 ++ ++L YE++A+++ + T F+++R LR + P+ ++ + ++ L++ Sbjct: 34 DEAVDLTHHYEYEAVVMRVFDTYRIEFDLIRRLRKSGFRAPIVAVANTLAESARLHILEA 93 Query: 94 GADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGK 153 G DD I + EE RI+ +RR+RG S + G++ VN++AK V V + +T K Sbjct: 94 GVDDLIVGAPSYEETFLRIQNHIRRNRGFQDSSLSVGNIEVNMNAKKVFVGAREVAVTKK 153 Query: 154 EYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIET 213 EYQ+IELL+LRK L+KE L+HLY G DEP KIIDVFICK+RKKL AA G++ + T Sbjct: 154 EYQIIELLALRKGCVLSKEAILDHLYGGLDEPNAKIIDVFICKIRKKLL-AADGQDVLVT 212 Query: 214 VWGRGYVL 221 WGRGY++ Sbjct: 213 NWGRGYMM 220 >gi|148559307|ref|YP_001258597.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|225627111|ref|ZP_03785149.1| DNA-binding response regulator [Brucella ceti str. Cudo] gi|254701398|ref|ZP_05163226.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513] gi|254707679|ref|ZP_05169507.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10] gi|254709738|ref|ZP_05171549.1| DNA-binding response regulator [Brucella pinnipedialis B2/94] gi|254713741|ref|ZP_05175552.1| DNA-binding response regulator [Brucella ceti M644/93/1] gi|254717201|ref|ZP_05179012.1| DNA-binding response regulator [Brucella ceti M13/05/1] gi|254718753|ref|ZP_05180564.1| DNA-binding response regulator [Brucella sp. 83/13] gi|256031228|ref|ZP_05444842.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1] gi|256159331|ref|ZP_05457121.1| DNA-binding response regulator [Brucella ceti M490/95/1] gi|256254636|ref|ZP_05460172.1| DNA-binding response regulator [Brucella ceti B1/94] gi|256369043|ref|YP_003106551.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260168364|ref|ZP_05755175.1| DNA-binding response regulator [Brucella sp. F5/99] gi|261219017|ref|ZP_05933298.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221811|ref|ZP_05936092.1| FeuP [Brucella ceti B1/94] gi|261315175|ref|ZP_05954372.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317269|ref|ZP_05956466.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321483|ref|ZP_05960680.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261751937|ref|ZP_05995646.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261757824|ref|ZP_06001533.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99] gi|265983731|ref|ZP_06096466.1| DNA-binding response regulator [Brucella sp. 83/13] gi|265988307|ref|ZP_06100864.1| FeuP [Brucella pinnipedialis M292/94/1] gi|265997775|ref|ZP_06110332.1| FeuP [Brucella ceti M490/95/1] gi|306838729|ref|ZP_07471564.1| two component transcriptional regulator [Brucella sp. NF 2653] gi|306842126|ref|ZP_07474795.1| two component transcriptional regulator [Brucella sp. BO2] gi|306845210|ref|ZP_07477786.1| two component transcriptional regulator [Brucella sp. BO1] gi|148370564|gb|ABQ60543.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|225617946|gb|EEH14990.1| DNA-binding response regulator [Brucella ceti str. Cudo] gi|255999203|gb|ACU47602.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260920395|gb|EEX87048.1| FeuP [Brucella ceti B1/94] gi|260924106|gb|EEX90674.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294173|gb|EEX97669.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261296492|gb|EEX99988.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261304201|gb|EEY07698.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261737808|gb|EEY25804.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99] gi|261741690|gb|EEY29616.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262552243|gb|EEZ08233.1| FeuP [Brucella ceti M490/95/1] gi|264660504|gb|EEZ30765.1| FeuP [Brucella pinnipedialis M292/94/1] gi|264662323|gb|EEZ32584.1| DNA-binding response regulator [Brucella sp. 83/13] gi|306274369|gb|EFM56176.1| two component transcriptional regulator [Brucella sp. BO1] gi|306287713|gb|EFM59144.1| two component transcriptional regulator [Brucella sp. BO2] gi|306406216|gb|EFM62460.1| two component transcriptional regulator [Brucella sp. NF 2653] Length = 229 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ G + IETV G GY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRMRSGGEGEA 224 >gi|300172681|ref|YP_003771846.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299887059|emb|CBL91027.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 141/223 (63%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 +RILLIEDD LA +I L E+F +V V + G DG + +D II DL L G Sbjct: 5 IRILLIEDDVNLADNIVGFL--EDFADVNVVNNGLDGEFEGQESPYDLIISDLMLPGENG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FEV++ LR I TPV IL+ SS++DK+ G GADDY++KPF +EEL+ R++A++RR+ Sbjct: 63 FEVIKYLRKNGIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRA 122 Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ ++I GD+ +NL+ + V+V G +I L GKE+ ++ L+ KN +T++ + + Sbjct: 123 GVYSEDNMIAVGDVLINLENRGVQVHGQQIKLVGKEFDILTYLAQNKNIIVTRDQIFDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + ++++++ LR+KL + G + I+T+ G++L Sbjct: 183 WGIDSDTTINVVNIYLNNLRRKLE-SVGQNDLIKTLRNIGFIL 224 >gi|332160068|ref|YP_004296645.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607372|emb|CBY28870.1| transcriptional regulatory protein basR/pmrA [Yersinia enterocolitica subsp. palearctica Y11] gi|325664298|gb|ADZ40942.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862041|emb|CBX72207.1| transcriptional regulatory protein pmrA [Yersinia enterocolitica W22703] Length = 219 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ L I + L S + L ++ +ILDLGL D G Sbjct: 1 MKLLIVEDDELLQRGIAMALTSGGYACDCAGTAAQAHSLLLSSQYSMVILDLGLPDQDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R I+ PV IL+ ++ED+V GL +GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 VLLRQWRRQHITLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +LI DLS+NL + V +QG + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GQSDNLIQQDDLSLNLSTQQVCLQGQALEVTPKEFAILSRLIMRAGQTVNRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LR+KL GK+ I T+ G GY L Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTIRGIGYRL 216 >gi|222056251|ref|YP_002538613.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221565540|gb|ACM21512.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 223 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A I L+ + V + G +G++L E+D IILD+ L + G+ Sbjct: 1 MRILVIEDEVKTAAFIRKGLRESGYTADVANEGFEGLDLALTREYDIIILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R K TP+ L+ +I+D+++GL+ GADDY+ KPF EL+ RIR I+RR Sbjct: 61 QIISRIRKLKKDTPIIFLTARDAIQDRIKGLELGADDYLVKPFAFSELLVRIRTILRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q LI GDL ++L V G R+ LT KE+ +I LL+ R LT+ ++D Sbjct: 121 VRTQELITIGDLEIDLMGHRVTRGGKRLDLTPKEFALISLLARRSGEVLTRVRIAERIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + ++DV + +LR K+ + K I TV G GYVL E Sbjct: 181 IDFESDTNVVDVHMRRLRAKVDDPF-EKKLIHTVRGVGYVLEER 223 >gi|270290423|ref|ZP_06196648.1| two-component system, OmpR family, KDP operon response regulator KdpE [Pediococcus acidilactici 7_4] gi|270281204|gb|EFA27037.1| two-component system, OmpR family, KDP operon response regulator KdpE [Pediococcus acidilactici 7_4] Length = 228 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 136/227 (59%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K+LA +EL L+ E + V G G+E +FDAI+LDL L +I G E Sbjct: 3 KILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEINGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V R +R KI TP+ +++ SI D+V GL GADDYI KPF EEL+AR+RA++R Sbjct: 63 VCRRIRREKI-TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRQVDL 121 Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ + D+ + + + V+ I+LT +EY+++ LL N ++E L Sbjct: 122 EEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLTKREYELLLLLMENVNVVQSRETLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ D E ++DV+I LR K+ + AG +YI+TV G GYV+R Sbjct: 182 SKVWGLEDGVETNVVDVYIRYLRNKI-DVAGQPSYIQTVRGTGYVMR 227 >gi|317495884|ref|ZP_07954247.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914061|gb|EFV35544.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 228 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LA ++E MLK N++V D G+D ++ ++D ILD+ + + G Sbjct: 1 MRLLLAEDERDLADALEAMLKHNNYSVDTVDNGQDALDYLMLDDYDGAILDVMMPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR K +TPV +L+ S +EDKV GL SGADDY++KPF +EL+AR+R++ RR Sbjct: 61 TVVKKLRENKKNTPVLLLTAKSEVEDKVYGLDSGADDYLTKPFVIKELLARVRSMTRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G++S++ + ++ L+ KEYQM+E+L + E FL ++ Sbjct: 121 TFTSNVLELGNVSLSKYTFELSTDKDKVRLSNKEYQMMEMLMRNPGNVIQTEQFLERIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E+ ++ V I LRKKL A I+ GY L Sbjct: 181 YDSDSEINVVWVNISYLRKKLK-ALDANIQIKATRNVGYTL 220 >gi|46201500|ref|ZP_00208129.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 223 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 126/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L ++E ++ F V GEDG L +DA+ILDLGL I G Sbjct: 1 MRVLVVEDEPQLTLALERAFEAAGFAVDKAYDGEDGWHLGDTENYDAVILDLGLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + + PV +L+ + +K +GADDY++KPF EE+V RIRA++RR+ Sbjct: 61 TVLSRWRESGRAMPVMVLTARARWAEKSLAFNAGADDYVTKPFEMEEVVTRIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA I G L+++ V G I LT +E++++ L+ ++ +++ + H+YD Sbjct: 121 GHAAPEITCGPLAIDTMGGRVSRAGLPIALTAQEFRILSYLAHHQSRVISRSELVEHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P+ ++DV + ++R+KL G + I T+ G+G+ Sbjct: 181 RDADPDSNVLDVLVARIRRKL-----GVDVIHTLRGQGW 214 >gi|332526928|ref|ZP_08403021.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111370|gb|EGJ11354.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 223 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD+ LA + L++ + V G + +EFD +ILDLGL + GF Sbjct: 1 MRILIAEDDQVLADGLLRSLRASGYAVDQVGSGTEADAALSAHEFDLVILDLGLPKLHGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR S PV IL+ S+E +V+GL GADDY++KPF+ +EL AR+RA+ RR Sbjct: 61 DVLKRLRARGASVPVLILTAADSVEQRVKGLDLGADDYMAKPFSLQELEARVRALTRRGL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S+I G L+ + + + I L+ +E ++E+L R ++K+ + L + Sbjct: 121 GTASSVIKHGPLTFDATGRVAYLNDQMIELSARELSLLEVLLQRSGRLVSKDQLVERLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E I+V+I +LRKK+ G I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYIHRLRKKIEQ---GPVRIATVRGLGYCLEKIA 222 >gi|159184556|ref|NP_353994.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159139861|gb|AAK86779.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 223 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAI+LD+GL + G Sbjct: 1 MRILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R A + PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S +V G + ++ + V G + LT E++++ L +++ + H+YD Sbjct: 121 GHASSELVCGPVRLDTKSSKATVNGTTLKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ +LRKK+ G + IET+ G GY ++ A Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GVDLIETIRGLGYRMQAPA 220 >gi|254442621|ref|ZP_05056097.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198256929|gb|EDY81237.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 239 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 133/223 (59%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+K ++ + LK + + V + + GEDG +D I+LD+ L G Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L++LR + + PV +++ +++++ GL GADDY++KPF +EL+ARI+A+ RRS Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S++ GDL VNL + V G + LT +E+ ++E L LT+ L H++ Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++DV + +LRKK+ +A + IETV G GY +R+ Sbjct: 197 YDFDPSTNVVDVCVQRLRKKV-DAGHDVHLIETVRGAGYRMRK 238 >gi|24373510|ref|NP_717553.1| transcriptional regulatory protein PhoP [Shewanella oneidensis MR-1] gi|24347813|gb|AAN54997.1|AE015637_13 transcriptional regulatory protein PhoP [Shewanella oneidensis MR-1] Length = 224 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 1 MRILVVEDDLILSHHLKVQLSDLGNQVQVALTAKEGFFQATNYPIDVAIVDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR + P+ IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 SLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I +G+L ++L AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 121 GFVKPVITSGELKLDLAAKQVTLGNDIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G N I T+ G+GY Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTR-DGIDNPIATIRGQGY 217 >gi|17987620|ref|NP_540254.1| transcriptional regulatory protein PhoP [Brucella melitensis bv. 1 str. 16M] gi|62289566|ref|YP_221359.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82699496|ref|YP_414070.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|189023825|ref|YP_001934593.1| PhoP family transcriptional regulator [Brucella abortus S19] gi|225852129|ref|YP_002732362.1| winged helix family two component transcriptional regulator [Brucella melitensis ATCC 23457] gi|237815063|ref|ZP_04594061.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308 A] gi|254688887|ref|ZP_05152141.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 6 str. 870] gi|254693368|ref|ZP_05155196.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 3 str. Tulya] gi|254697019|ref|ZP_05158847.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254729918|ref|ZP_05188496.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 4 str. 292] gi|256044306|ref|ZP_05447210.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113143|ref|ZP_05454020.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis bv. 3 str. Ether] gi|256257135|ref|ZP_05462671.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 9 str. C68] gi|256264359|ref|ZP_05466891.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2 str. 63/9] gi|260545673|ref|ZP_05821414.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC 8038] gi|260563660|ref|ZP_05834146.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1 str. 16M] gi|260754372|ref|ZP_05866720.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260757591|ref|ZP_05869939.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761417|ref|ZP_05873760.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260883397|ref|ZP_05895011.1| FeuP [Brucella abortus bv. 9 str. C68] gi|261213618|ref|ZP_05927899.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|265990718|ref|ZP_06103275.1| FeuP [Brucella melitensis bv. 1 str. Rev.1] gi|265994556|ref|ZP_06107113.1| FeuP [Brucella melitensis bv. 3 str. Ether] gi|297247981|ref|ZP_06931699.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|18418609|gb|AAL68973.1|AF007804_1 FeuP [Brucella abortus] gi|17983330|gb|AAL52518.1| transcriptional regulatory protein phop [Brucella melitensis bv. 1 str. 16M] gi|62195698|gb|AAX73998.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82615597|emb|CAJ10584.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Brucella melitensis biovar Abortus 2308] gi|189019397|gb|ACD72119.1| Transcriptional regulatory protein PHOP [Brucella abortus S19] gi|225640494|gb|ACO00408.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis ATCC 23457] gi|237789900|gb|EEP64110.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308 A] gi|260097080|gb|EEW80955.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC 8038] gi|260153676|gb|EEW88768.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1 str. 16M] gi|260667909|gb|EEX54849.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671849|gb|EEX58670.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260674480|gb|EEX61301.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872925|gb|EEX79994.1| FeuP [Brucella abortus bv. 9 str. C68] gi|260915225|gb|EEX82086.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|262765669|gb|EEZ11458.1| FeuP [Brucella melitensis bv. 3 str. Ether] gi|263001502|gb|EEZ14077.1| FeuP [Brucella melitensis bv. 1 str. Rev.1] gi|263094652|gb|EEZ18431.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2 str. 63/9] gi|297175150|gb|EFH34497.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] Length = 229 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ G + IETV G GY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRMRSGGEGEA 224 >gi|302185041|ref|ZP_07261714.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] Length = 222 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D I+LDLGL +PG Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + + L+++ + V G I LT E++++ L L+K HLY Sbjct: 121 GLANQPTLESAGLNLDESRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG +E + +I+V + LR+KL G+ +ET G+GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216 >gi|167568211|ref|ZP_02361085.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 225 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E F V GE + K +DA++LD+ L + G Sbjct: 1 MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GDL + + G + L +E+ ++E L L++ T++K ++ +Y Sbjct: 121 GVGATQLACGDLVYLFATREFQCSGVPLVLRRREHAILETLMLQQGKTVSKARLMDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DEP ID++I +LRK LS +A I T+ G GY+LR Sbjct: 181 LDDEPSADAIDIYIHRLRKHLSGSAA---QIITLRGLGYILR 219 >gi|84393831|ref|ZP_00992576.1| DNA-binding response regulator [Vibrio splendidus 12B01] gi|86148079|ref|ZP_01066380.1| DNA-binding response regulator [Vibrio sp. MED222] gi|84375526|gb|EAP92428.1| DNA-binding response regulator [Vibrio splendidus 12B01] gi|85834139|gb|EAQ52296.1| DNA-binding response regulator [Vibrio sp. MED222] Length = 219 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I L+ + +V +L +DGI+ E+DAI+LDLGL + Sbjct: 1 MKILVVEDEPRLGQQILETLEGAD---WVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A ++ GDLS++ + V QG + LT EY+++ +N +++ + H Sbjct: 118 RASGSAAPILQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + ++VFI ++RKK++ I+TV G GY L Sbjct: 178 IYKQDFDRDSNTVEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216 >gi|238027804|ref|YP_002912035.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] gi|237876998|gb|ACR29331.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 221 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L FD ++LD+ L + GF Sbjct: 1 MRILVVEDDAEIGEAIGSRLTRLGHAVDLERDGAAASSLLGVESFDLVVLDVMLPSLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR A +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 SVLRRLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G LS++ ++ E+ G + L+ +E+ ++E+L+ R +K+ LN L+ Sbjct: 121 GHASDVLRFGSLSIDRSSRLAELDGQPLPLSRQEFALLEILASRPQRVFSKDELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 EP ++ ++ ++R+KL G I T G GY Sbjct: 181 FGREPSANAVEQYVTRVRRKLQ---GSDVEIRTARGMGY 216 >gi|227892817|ref|ZP_04010622.1| two-component system regulator [Lactobacillus ultunensis DSM 16047] gi|227865458|gb|EEJ72879.1| two-component system regulator [Lactobacillus ultunensis DSM 16047] Length = 238 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL L+ EN+ V + G G++ FDAI+LDL L D+ G E Sbjct: 3 KILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALEQNFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 63 IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ DL++ + V G I LT +EY ++ L KN +++ Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + LN ++ E +++V++ LR K+ + G +YI+TV G GY++R+ D+ Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DVPGQPSYIKTVRGTGYMVRDEDDDK 237 >gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 224 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K + I+ L+ E + V GE+G+++ +D IILD L G Sbjct: 1 MRILVVEDEKKVLSFIKRGLEEEQYEVLTASDGEEGLKMALDMPYDLIILDWMLPKQDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR K +TPV +L+ S+ED V GL SG+DDY++KPF EL+AR+RA++RRS Sbjct: 61 SVLKELRNQKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ V + I LT KEY ++E + LT+ M H++D Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IIDV++ LRKK+ A K I TV G GY+L+E Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRDA-DKKLIHTVRGVGYILKE 222 >gi|929822|emb|CAA62008.1| FeuP [Rhizobium leguminosarum] Length = 223 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 125/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S I+ G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LRKK+ G + IETV G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214 >gi|330831451|ref|YP_004394403.1| two-component system, regulatory protein [Aeromonas veronii B565] gi|328806587|gb|AEB51786.1| Two-component system, regulatory protein [Aeromonas veronii B565] Length = 218 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 132/226 (58%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL++ED+K LA + L+ F VTDL DG E L + +DAIILDLGL Sbjct: 1 MRILIVEDEKILAGQLAEQLRLSGF---VTDLCHDGNEAGFLGETEPYDAIILDLGLPGR 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ R I TPV +L+ + +K+ GL +GADDY++KPF ELVAR+ A+VR Sbjct: 58 DGLSVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A S++ G + +++ A V +G I LT E++++ L + +++ ++H Sbjct: 118 RAAGNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +Y + + ++VFI ++RKK + + IETV G GY + E Sbjct: 178 IYAQDFDRDSNTVEVFIGRIRKKTN-----PDLIETVRGLGYRINE 218 >gi|213968576|ref|ZP_03396718.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|301385563|ref|ZP_07233981.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato Max13] gi|302060389|ref|ZP_07251930.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato K40] gi|302132437|ref|ZP_07258427.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926509|gb|EEB60062.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|331017510|gb|EGH97566.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 220 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+LL+EDD+A+ I + L +E Y D EDG+ + L L +P Sbjct: 1 MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF++LR LR +++ PV IL+ D++ GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G AQ L+ +S++ ++ V QG + +T EYQ++ L +R +T+E N Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNT 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY +D+ E ++V I LRKKLS I TV G GY+L Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216 >gi|260462382|ref|ZP_05810590.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259031876|gb|EEW33144.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 221 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L I L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRVLVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G L ++ A +V G + LT E++++ L +++ + HLYD Sbjct: 121 GHASSELTCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGDVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ +LRKK+ G + IETV G GY +RE Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GIDMIETVRGMGYRMRE 218 >gi|238761757|ref|ZP_04622731.1| Transcriptional regulatory protein basR/pmrA [Yersinia kristensenii ATCC 33638] gi|238699871|gb|EEP92614.1| Transcriptional regulatory protein basR/pmrA [Yersinia kristensenii ATCC 33638] Length = 219 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ L I + L S + + L ++ +ILDLGL D G Sbjct: 1 MKLLIVEDDELLQRGIAMALTSAGYPCDCAGTAAEAHSLLITSQYSMVILDLGLPDQDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R ++ PV IL+ ++ED+V GL +GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 VLLRQWRREHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L+ DLS+NL + V +QG + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQGQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LR+KL GK+ I TV G GY L Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRL 216 >gi|330879178|gb|EGH13327.1| DNA-binding response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 220 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+LL+EDD+A+ I + L +E Y D EDG+ + L L +P Sbjct: 1 MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF++LR LR +++ PV IL+ D++ GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G AQ L+ +S++ ++ V QG + +T EYQ++ L +R +T+E N Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNT 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY +D+ E ++V I LRKKLS I TV G GY+L Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216 >gi|327398349|ref|YP_004339218.1| winged helix family two component transcriptional regulator [Hippea maritima DSM 10411] gi|327180978|gb|AEA33159.1| two component transcriptional regulator, winged helix family [Hippea maritima DSM 10411] Length = 222 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK AH I L N+ V D G+DG+ L ++D +I+D L I G Sbjct: 1 MRILLIEDDKETAHFIIKGLSESNYTVDHADNGKDGLYLAVNSKYDLLIIDRMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A P+ ILS + S+++KV GL+ GADDY+ KP+ EL+ARI ++RR++ Sbjct: 61 SIVKMLRAADKRMPILILSALGSVDEKVEGLRIGADDYLPKPYAFSELLARIEVLLRRNK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL +NL+ TV +I L E++++ L + +T+ M L +++ Sbjct: 121 ESQAKFLQVADLKINLENYTVTRAAKKIELKPTEFKLLVYLVRHRGQVITRTMLLENIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P+ I+DV I +LR K+ K I+T+ G GY + E Sbjct: 181 YNFDPQTNIVDVHISRLRSKIDRGF-DKELIKTIRGIGYKIEE 222 >gi|294140509|ref|YP_003556487.1| transcriptional regulatory protein PhoP [Shewanella violacea DSS12] gi|293326978|dbj|BAJ01709.1| transcriptional regulatory protein PhoP [Shewanella violacea DSS12] Length = 224 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 127/219 (57%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+H +++ L V V ++G Y D I+DLGL D G Sbjct: 1 MRILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIIDLGLPDQDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR ++ P+ IL+ + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS Sbjct: 61 TLIKNLRDNELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I +G L ++L AK V + + +T EY ++E L + + K+ L+ +Y Sbjct: 121 GFVRPKINSGALELDLAAKQVSMNSVPMEITAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + I+V + +LRKKL+ G N I T+ G+GY Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-EGLDNPIATIRGQGY 217 >gi|229017942|ref|ZP_04174820.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1273] gi|229024164|ref|ZP_04180630.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1272] gi|228737121|gb|EEL87650.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1272] gi|228743367|gb|EEL93489.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1273] Length = 224 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 133/224 (59%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+++LA +EL LK E + V + G G++ +D I+LDL L + G E Sbjct: 3 QILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLDAALEKNYDLILLDLMLPGLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR K +TP+ +L+ SI D+V GL SGADDY+ KPF EEL+AR+R I RR Sbjct: 63 VCRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q S + DL + ++++T+ I LT KE++++ + N LT+++ L+ + Sbjct: 122 TEQKHPSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLFMFMKNINRVLTRDILLDQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E I+DV++ LR KL ++ + YI+TV G GY+++ Sbjct: 182 WGYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224 >gi|229060336|ref|ZP_04197702.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH603] gi|228718926|gb|EEL70543.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH603] Length = 224 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 132/223 (59%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+++LA +EL LK E + V + G G+E +D I+LDL L + G EV Sbjct: 4 ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLMLPGLNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR K STP+ +L+ SI D+V GL SGADDY+ KPF EEL+AR+R I RR Sbjct: 64 CRRLRATK-STPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREENT 122 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q S + DL + ++++T+ I LT KE++++ + N LT+++ L+ ++ Sbjct: 123 EQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILLDQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I+DV++ LR KL ++ + YI+TV G GY+++ Sbjct: 183 GYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224 >gi|114797742|ref|YP_761056.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114737916|gb|ABI76041.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 220 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ +A I LK F V + GED +DAIILDLGL + G Sbjct: 1 MRVLLVEDEVLIADDISAALKDSGFMVDLARDGEDAWFKGDTEPYDAIILDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + TP+ ILS S ++V G+++GADDY+ KPF EL+ R+RA++RR+ Sbjct: 61 SVLKRWRAAGMITPILILSARGSWMERVDGIEAGADDYLPKPFEMAELIVRLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ ++ GDL V+ T+ G + +T E+++++ L N T++ HL+ Sbjct: 121 GMAQPVLQAGDLMVDTRRMTIAYAGQPVRVTPLEFRLVDYLVHNMNRTVSAGELSEHLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + I+ + +LR+KL G I T G GYV+ A Sbjct: 181 VEDTGDTNAIEAIVSRLRRKL-----GPGVISTRRGFGYVIEAGA 220 >gi|290352221|dbj|BAI78821.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IE +K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEGEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|292900777|ref|YP_003540146.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291200625|emb|CBJ47757.1| two-component response regulator [Erwinia amylovora ATCC 49946] Length = 219 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD L + L L E + V G + ++ ++LDLGL D G Sbjct: 1 MKILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R + PV ILS ++ D+V GL +GADDY+ KPF EL AR+RA++RR + Sbjct: 61 DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L+ GD+++NL ++ V V + +T KE+ ++ L +R T+ +E LY Sbjct: 121 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D+ ++V + LR+KL GK+ I+TV G GY L E Sbjct: 181 WQDDTSSNTLEVHMHNLRRKL-----GKDRIKTVRGVGYRLEE 218 >gi|295699191|ref|YP_003607084.1| transcriptional regulator [Burkholderia sp. CCGE1002] gi|295438404|gb|ADG17573.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 228 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 133/228 (58%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L + + V V GE+G L +++D I+LD+ L GF Sbjct: 1 MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGTHLATEFDYDVIVLDVMLPKRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ALR+ K STPV +L+ + D+VRGL+ GADDY++KPF+ ELV R+ A+ RR+R Sbjct: 61 SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT KE+Q++ +L+ R+ L+K ++D Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAK 226 + +++ I +LR KL K + TV G GYVL RE A+ Sbjct: 180 VNFDSHTNVVETAIKRLRAKLDGPFPSK-LLHTVRGMGYVLEVREEAE 226 >gi|255305635|ref|ZP_05349807.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 229 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 127/229 (55%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDD+ + + L SEN++V G IE+ K Y FD I+LDL L GF Sbjct: 1 MDILLVEDDRNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVL+ +R + PV I + S DK+ GL GADDYI+KPF+ EL+ARI+A +RR Sbjct: 61 EVLKYIRSVSV-VPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR +I DL +N+ V G ++LT E+++++LL+ + +KE Sbjct: 120 VYSSSRNSQDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N ++ +++ I +LR KLS+ NYI+T+WG GY + E Sbjct: 180 YNTIWKEPYYGNENVLNTHINRLRNKLSDGIEKNNYIKTLWGIGYKMEE 228 >gi|330875757|gb|EGH09906.1| DNA-binding response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965575|gb|EGH65835.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 222 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D I+LDLGL +PG Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLQQWRGNGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + + L+++ + V G I LT E++++ L L+K HLY Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGADIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG +E + +I+V + LR+KL G+ IET G+GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVIETRRGQGYL 216 >gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match) [Frankia alni ACN14a] Length = 358 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 133/231 (57%), Gaps = 6/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + L+ E + V G + L + + DA++LD+ L D+ G Sbjct: 19 VRVLVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIMLPDMDGL 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR+ Sbjct: 79 EVLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAA 138 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++L +V GDL+++ +++ V G +HLT E++++ L+K L+ Sbjct: 139 RTTEALQGARLVVGDLTMDEESREVARGGVPVHLTATEFELLRFFMRNPRRVLSKAQILD 198 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++ + ++++++ LRKK+ AG I T+ G GYVLR D Sbjct: 199 RVWNYDFGGQANVVELYVSYLRKKID--AGRPPMIHTMRGAGYVLRPAETD 247 >gi|28870545|ref|NP_793164.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213970019|ref|ZP_03398151.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|301381374|ref|ZP_07229792.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato Max13] gi|302062145|ref|ZP_07253686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato K40] gi|302130455|ref|ZP_07256445.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853793|gb|AAO56859.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213925123|gb|EEB58686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] Length = 222 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D I+LDLGL +PG Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + + L+++ + V G I LT E++++ L L+K HLY Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGTDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG +E + +I+V + LR+KL G+ IET G+GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVIETRRGQGYL 216 >gi|148979669|ref|ZP_01815641.1| DNA-binding response regulator [Vibrionales bacterium SWAT-3] gi|145961646|gb|EDK26944.1| DNA-binding response regulator [Vibrionales bacterium SWAT-3] Length = 219 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I L+ + +V +L +DGI+ E+DAI+LDLGL + Sbjct: 1 MKILVVEDEPRLGQQIIETLEGAD---WVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A ++ GDLS++ + V QG + LT EY+++ +N +++ + H Sbjct: 118 RASGSAAPVLQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + ++VFI ++RKK++ I+TV G GY L Sbjct: 178 IYKQDFDRDSNTVEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216 >gi|53717679|ref|YP_106665.1| response regulator protein [Burkholderia pseudomallei K96243] gi|53724235|ref|YP_104202.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|67641558|ref|ZP_00440334.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse 4] gi|76811612|ref|YP_331671.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|121599653|ref|YP_994556.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124386101|ref|YP_001027828.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126440707|ref|YP_001057097.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126450961|ref|YP_001082224.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126451555|ref|YP_001064327.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134281570|ref|ZP_01768278.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|167001629|ref|ZP_02267423.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|167717409|ref|ZP_02400645.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167736451|ref|ZP_02409225.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167813526|ref|ZP_02445206.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167822070|ref|ZP_02453541.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167843678|ref|ZP_02469186.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167892152|ref|ZP_02479554.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167900664|ref|ZP_02487869.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167908883|ref|ZP_02495974.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167916922|ref|ZP_02504013.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|217423889|ref|ZP_03455389.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|226193228|ref|ZP_03788838.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237814435|ref|YP_002898886.1| DNA-binding response regulator TctD [Burkholderia pseudomallei MSHR346] gi|242315495|ref|ZP_04814511.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254174802|ref|ZP_04881463.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254184105|ref|ZP_04890696.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254186570|ref|ZP_04893087.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254194715|ref|ZP_04901146.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254201274|ref|ZP_04907638.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254206615|ref|ZP_04912966.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254257956|ref|ZP_04949010.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254298627|ref|ZP_04966078.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|254357348|ref|ZP_04973622.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|52208093|emb|CAH34023.1| response regulator protein [Burkholderia pseudomallei K96243] gi|52427658|gb|AAU48251.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76581065|gb|ABA50540.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|121228463|gb|ABM50981.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124294121|gb|ABN03390.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126220200|gb|ABN83706.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126225197|gb|ABN88737.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|126243831|gb|ABO06924.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|134247237|gb|EBA47323.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|147747168|gb|EDK54244.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147752157|gb|EDK59223.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148026412|gb|EDK84497.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|157808646|gb|EDO85816.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157934255|gb|EDO89925.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|160695847|gb|EDP85817.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|169651465|gb|EDS84158.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|184214637|gb|EDU11680.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217392952|gb|EEC32974.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|225934828|gb|EEH30805.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237503053|gb|ACQ95371.1| DNA-binding response regulator TctD [Burkholderia pseudomallei MSHR346] gi|238522511|gb|EEP85955.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse 4] gi|242138734|gb|EES25136.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|243062639|gb|EES44825.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254216645|gb|EET06029.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 225 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E F V GE + K +DA++LD+ L + G Sbjct: 1 MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GDL + + G + L +E+ ++E L L++ T++K ++ +Y Sbjct: 121 GVGATQLACGDLVYLFATREFQCGGAPLALRRREHAILETLMLQQGKTVSKARLMDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DEP ID++I +LRK LS G I T+ G GY+LR Sbjct: 181 LDDEPSADAIDIYIHRLRKHLS---GSLAQIITLRGLGYILR 219 >gi|332992917|gb|AEF02972.1| putative two component response regulator transcription regulator protein [Alteromonas sp. SN2] Length = 227 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + I+ L F + + G DG EF+ IILD+ L DI G+ Sbjct: 1 MKILVVEDEKKIGDYIKQGLTESGFVIELVRNGLDGHHKAMTGEFNLIILDVMLPDINGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +LR + TPV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 RILESLRQSGNQTPVLFLTARDSVNDRVKGLELGADDYLVKPFAFAELLARVRTLFRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +L+ DL +++ ++ V+ G I+LT KE+ ++EL+ R+ L + + + ++D Sbjct: 121 TVAANLLQVADLQMDIPSRVVKRAGQSINLTTKEFSLLELMVRRQGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +IDV I +LR K+ +A K I+TV G GY L Sbjct: 181 INFDSDTNVIDVAIRRLRAKIDDAFSPK-LIQTVRGMGYKL 220 >gi|163940441|ref|YP_001645325.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229011915|ref|ZP_04169095.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides DSM 2048] gi|229133482|ref|ZP_04262309.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BDRD-ST196] gi|163862638|gb|ABY43697.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228649882|gb|EEL05890.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BDRD-ST196] gi|228749329|gb|EEL99174.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides DSM 2048] Length = 224 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 132/223 (59%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+++LA +EL LK E + V + G G+E +D I+LDL L + G EV Sbjct: 4 ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALEKNYDLILLDLMLPGLNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR K STP+ +L+ SI D+V GL SGADDY+ KPF EEL+AR+R I RR Sbjct: 64 CRRLRATK-STPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREENT 122 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q S + DL + ++++T+ I LT KE++++ + N LT+++ L+ ++ Sbjct: 123 EQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILLDQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I+DV++ LR KL ++ + YI+TV G GY+++ Sbjct: 183 GYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224 >gi|330981352|gb|EGH79455.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 222 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D I+LDLGL +PG Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + + L+++ + V G I LT E++++ L L+K HLY Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG +E + +I+V + LR+KL G+ +ET G+GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216 >gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM 13479] gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM 13479] Length = 234 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 135/233 (57%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + I L+ +N V GE+ I L K E+D ++LD+ L G+E Sbjct: 3 RILVVDDEKLIVKGIRFSLEQDNMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKFDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R P+ +L+ + DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 63 VCQAIREFS-EMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTK 121 Query: 120 ----RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A S +VT GDL ++ D++ V + I+LT KE+ ++ELL+ N ++E Sbjct: 122 KNRRESRAGSNVVTSGDLKLDRDSRRVFIGEKEINLTAKEFDLLELLACNPNKVYSREQL 181 Query: 175 LNHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L +++ + D +V+ +DV + +LR+K+ + Y+ T WG GY R + Sbjct: 182 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYFRAQS 234 >gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440] Length = 233 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F+V G + K + D ++LD+ L D+ GFE Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATAISGSAALSAAKEHRPDLVVLDIMLPDLDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR TPV L+ + +DK+RGL G DDY++KPF+ EEL ARIRA++RRS Sbjct: 69 VIRLLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSTS 128 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + DL ++ +A V G R+ L+ E++++ L L N L+K L+H++ Sbjct: 129 GEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++ +I LR+K+ N I T+ G GYVLR+ A Sbjct: 189 NYDFRGDDNIVESYISYLRRKVDNTQ--PRLIHTLRGVGYVLRKPA 232 >gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J] gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J] Length = 228 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 135/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K LA + L L+ E + V V G +G+E +FD I+LDL L ++ GFE Sbjct: 4 KILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + A + + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ETEKKAPNQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMSNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DMPGRESYIQTVRGMGYVIRE 227 >gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 224 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 94/225 (41%), Positives = 134/225 (59%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59 IL++ED+K +A IEL L++E Y T++ DGI L KF E + +ILDL L + G Sbjct: 6 ILIVEDEKDIARFIELELQAEG---YRTEVAHDGITGLSKFREVNPNLVILDLMLPVMDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R + P+ IL+ IEDKV+GL +GADDY+ KPF+ EEL+AR+RA +RR Sbjct: 63 IEVARRIRKTS-NVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRRV 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL +NL+ + V G RI L+ KE++++ELL+ T+ ++ Sbjct: 122 TPAITGEIRVADLVINLEGREVFRAGRRIELSNKEFELLELLAKNPGKVFTRYEIEEKVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G + ++DV+I LRKKL A G + I TV G GYVLRE+ Sbjct: 182 PGY-QGGSNVVDVYIGYLRKKLE-AGGERRLIHTVRGVGYVLRED 224 >gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 223 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNDRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G ++++ V V G+ + +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ ++RKKL + I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLL 216 >gi|26989432|ref|NP_744857.1| DNA-binding response regulator [Pseudomonas putida KT2440] gi|24984298|gb|AAN68321.1|AE016466_6 DNA-binding response regulator [Pseudomonas putida KT2440] Length = 220 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL I L+ E + + G G+ + FD +ILDLGL + G Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR S PV IL+ +++D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI +S++ + V+ G + LT KEY ++ L + T+E LY Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +EPE ++V I LRKKL N I TV G GY++ A Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEVKA 220 >gi|304322363|ref|YP_003856006.1| two-component response regulator [Parvularcula bermudensis HTCC2503] gi|303301265|gb|ADM10864.1| two-component response regulator [Parvularcula bermudensis HTCC2503] Length = 224 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD +AH + L E + G DG+E+ +FD ++LD L + G Sbjct: 1 MRVLIIEDDHKMAHYLGDGLTREGHQIQAISTGPDGLEMALAQDFDVVVLDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR A PV +L+ M ++D+V GL +GADDY+ KPF E AR+ A+VRR Sbjct: 61 SLLKRLRAAGRKMPVLLLTAMGGLDDRVEGLDAGADDYLVKPFAFSEAYARLNALVRRPP 120 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G+ +L DL ++L A+TV G + L KE+ ++E+L KN +TK M L + Sbjct: 121 IAGNPTTL-TAADLHMDLIARTVSRGGVSLDLGPKEFLLLEILLRNKNRVMTKTMLLERV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +P+ +++ I +LR K+ +ETV G GYV+R + Sbjct: 180 WSFHFDPQTSLVETHISRLRAKIDRPF-ASALVETVRGAGYVIRAS 224 >gi|218709844|ref|YP_002417465.1| DNA-binding response regulator [Vibrio splendidus LGP32] gi|218322863|emb|CAV19040.1| DNA-binding response regulator [Vibrio splendidus LGP32] Length = 219 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I L+ + +V +L +DGI+ E+DAI+LDLGL + Sbjct: 1 MKILVVEDEPRLGQQIIDTLEGAD---WVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A ++ GDLS++ + V QG + LT EY+++ +N +++ + H Sbjct: 118 RASGSAAPILQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + ++VFI ++RKK++ I+TV G GY L Sbjct: 178 IYKQDFDRDSNTVEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216 >gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 225 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 125/223 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ + IE L +N+ V + G+ E +++D I+LD+ L + G Sbjct: 1 MKILVVEDDENIIIPIEEYLDEQNYIVEIASDGQAAREFLDVFDYDLIVLDIMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR TP+ +L+ +I+D+V+GL +GADDY+ KPF+ EEL AR+RA++RR Sbjct: 61 SLCQQLRANGCKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALLRRGE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+L V+ + V Q + L+ KEY+++E ++ L+HL+ Sbjct: 121 TSLPPILSWGELCVDPSSCEVTYQQQVLSLSPKEYRLLEFFLRHPRRMFSRSQLLDHLWA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE + I LR+KL A + IETV+G GY L+E Sbjct: 181 MDQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRLKE 223 >gi|51596319|ref|YP_070510.1| transcriptional activator [Yersinia pseudotuberculosis IP 32953] gi|186895361|ref|YP_001872473.1| two component heavy metal response transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|51589601|emb|CAH21231.1| transcriptional activator [Yersinia pseudotuberculosis IP 32953] gi|186698387|gb|ACC89016.1| two component heavy metal response transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] Length = 230 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 134/231 (58%), Gaps = 4/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + I L F V V G DG+ L Y++D I+LD+ L + G+ Sbjct: 1 MRLLLVEDEEKTSSYINRALSELGFTVDVAATGNDGLYLALEYDYDTIVLDVMLPGMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL LR +K TPV +LS S++++V+GL+ GADDY+ KPF+ ELVARI+A++RR Sbjct: 61 SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S G S + DL ++L A+ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 SDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +D + + +++V I +LR K+ K + TV G GYVL +T Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKIDTPYPVK-LLHTVRGMGYVLETRPDRQT 229 >gi|292486824|ref|YP_003529694.1| putative transcriptional regulator Ycf27 [Erwinia amylovora CFBP1430] gi|291552241|emb|CBA19278.1| probable transcriptional regulator ycf27 [Erwinia amylovora CFBP1430] gi|312170892|emb|CBX79151.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC BAA-2158] Length = 251 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD L + L L E + V G + ++ ++LDLGL D G Sbjct: 33 MKILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGA 92 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R + PV ILS ++ D+V GL +GADDY+ KPF EL AR+RA++RR + Sbjct: 93 DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 152 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L+ GD+++NL ++ V V + +T KE+ ++ L +R T+ +E LY Sbjct: 153 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 212 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D+ ++V + LR+KL GK+ I+TV G GY L E Sbjct: 213 WQDDTSSNTLEVHMHNLRRKL-----GKDRIKTVRGVGYRLEE 250 >gi|88860809|ref|ZP_01135446.1| probable two-component response regulator transcription regulator protein [Pseudoalteromonas tunicata D2] gi|88817404|gb|EAR27222.1| probable two-component response regulator transcription regulator protein [Pseudoalteromonas tunicata D2] Length = 227 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 135/223 (60%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +A +E L++E + + G++G+EL + +F I+LD+ L + G Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV +ALR+ K P+ +L+ M +D ++GL+ GADDY++KPF +EL+ARI A+ RR+ Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ G L + + V + I LT KE ++ELL L++E L+++ Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P ++DV+I KLRKKL+ + G++ IET G GY L Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRL 223 >gi|170698062|ref|ZP_02889143.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170137023|gb|EDT05270.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 225 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E+F V GE + K +DA++LD+ L I G Sbjct: 1 MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + +V GDL + + L +E+ ++E L L++N T++K ++ ++ Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 DEP ID++I +LRK L+ + I T+ G GY+LR + Sbjct: 181 LDDEPSADAIDIYIHRLRKHLALSTA---EIITLRGLGYILRAKS 222 >gi|28897986|ref|NP_797591.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260364229|ref|ZP_05776932.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|260877141|ref|ZP_05889496.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|260895801|ref|ZP_05904297.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|260902062|ref|ZP_05910457.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|28806200|dbj|BAC59475.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308088349|gb|EFO38044.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|308093914|gb|EFO43609.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|308109081|gb|EFO46621.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|308111902|gb|EFO49442.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|328473058|gb|EGF43906.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329] Length = 219 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L I L++ N +V +L +DGI+ E+DAI+LDLGL + Sbjct: 1 MKILVVEDDPRLGEQIIETLEN---NGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+AR+RA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARLRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ V QG + LT EY+++ +++ + H Sbjct: 118 RASGNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + I+VFI ++RKK++ I+TV G GY L Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216 >gi|262165813|ref|ZP_06033550.1| two-component system response regulator QseB [Vibrio mimicus VM223] gi|262025529|gb|EEY44197.1| two-component system response regulator QseB [Vibrio mimicus VM223] Length = 219 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 131/227 (57%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L + I L + + +V +L +DGI+ E+D I+LDLGL + Sbjct: 1 MKILVVEDDVQLGNQI---LSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ V +G I LT EY++I +++ + H Sbjct: 118 RASGNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y + + I+VFI ++RKK++ + I+TV G GY L N Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PDVIKTVRGLGYQLHAN 219 >gi|167588685|ref|ZP_02381073.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 221 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 126/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD + +I L V + G L + FD ++LD+ L + GF Sbjct: 1 MRILVAEDDAEIGAAIRSRLTRLGHAVDLETDGATANSLLRVERFDLVVLDVMLPSMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR + +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 AILRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L+++ ++ E+ G + L+ +E+ ++E+L+ R +KE LN L+ Sbjct: 121 GHANDVLTLGGLTIDRSSRLAELDGRPLSLSRQEFALLEILASRPQRIFSKEGLLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++R+KL G I T G GY Sbjct: 181 FGNEPSANAVEQYVTRVRRKLH---GSSVEIRTARGMGY 216 >gi|330944587|gb|EGH46541.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330954542|gb|EGH54802.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] Length = 222 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D I+LDLGL +PG Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + + L+++ + V G I LT E++++ L L+K HLY Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG +E + +I+V + LR+KL G+ +ET G+GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216 >gi|152979029|ref|YP_001344658.1| two component transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150840752|gb|ABR74723.1| two component transcriptional regulator, winged helix family [Actinobacillus succinogenes 130Z] Length = 226 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 133/232 (57%), Gaps = 9/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LLIEDD + + + + L F+V + TD G+ G+E K +DA++LDL L + G Sbjct: 1 MRVLLIEDDPLIGNGLNIGLTKSGFSVDWFTD-GKTGLEAVKSAPYDAVVLDLTLPKMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++L+ R PV IL+ +++++V GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 60 LDILQQWRHDGFDVPVLILTARDTLDERVNGLQMGADDYLCKPFALAEVVARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +I + + + V ++ + LT +EY+++EL L K LT+ LY Sbjct: 120 YGQANPIIEHSLVKFDPNNHRVTLRDKEVALTTREYKLLELFMLNKERVLTRAFIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + ++ ++V + LRKKL GK +I TV G GY L +N DET E Sbjct: 180 NWDEDISSNALEVHMYNLRKKL-----GKQFIRTVHGVGYALGKN--DETPE 224 >gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 1329 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 2/233 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD +A ++ L +N+ V V + G+ +L + YE+D I+LD+ L + G Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + P+ +L+G S DK GL +GADDY+ KP ++EELVAR+RA++RR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +Q ++ G L ++ + V Q ++ LT KEY ++ELL + M L+HL+ Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDETCE 231 D P + I LR KL A + +ETV+G GY L+ EN D+ E Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQENDHDDNHE 233 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++DD ++++L + + E + D +ILD+ + + G Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E+ + +R P+ L+ S+ E + GADD++SKP ELV RI + R Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPIIISELVNRILNRLER 501 Query: 119 SR 120 R Sbjct: 502 VR 503 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 8/137 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD ++ +L + V D G+ I D I+LDL + + G+E Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 63 LRALRVAKIST--PVCILSGM-SSIEDKVRGLQSGAD-----DYISKPFNKEELVARIRA 114 + L+ + P+ I S SS + R + A+ D++SKP + +L+ +R Sbjct: 1136 MAGLKKCSDTKDIPIVICSVYKSSQNNPNRQEDTNAESVKFADWLSKPVEETDLLNSLRK 1195 Query: 115 IVRRSRGHAQSLIVTGD 131 +V + LI+ D Sbjct: 1196 VVSEPSKRLKILIIEDD 1212 >gi|134293501|ref|YP_001117237.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136658|gb|ABO57772.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 224 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 126/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPNLAQSLHDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S I G L+ + ++ ++ G + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSRIECGPLAYDSVDRSFQLAGAALSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I++++ +LRKKL N I T+ G GY+L A Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKA 222 >gi|121605996|ref|YP_983325.1| two component transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120594965|gb|ABM38404.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 219 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 131/224 (58%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+EDD + ++ +L++E+ Y D DG+ + ++D ++LDLGL Sbjct: 1 MRLLLVEDDAMIGEAVLQVLRAEH---YAVDWVRDGVMADAALRSEQYDLVLLDLGLPKR 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLRALR + S PV + + ++ D++ GL +GADDY+ KP++ +EL+ARIRA++R Sbjct: 58 DGLDVLRALRARRASVPVLVATARDAVGDRIAGLDAGADDYVVKPYDIDELLARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G + + +S+N + V G + L+ +E+ ++E L R L++ Sbjct: 118 RSAGRGEPVFEHKGVSLNPATREATVHGQPVSLSAREWAVLEPLLARPGAVLSRAQLEEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ +D+ ++V+I +RKKL N ++I+TV G GYV+ Sbjct: 178 LFSWKDDVSSNAVEVYIHGVRKKLGN-----DFIQTVRGLGYVV 216 >gi|229822838|ref|ZP_04448908.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271] gi|229787651|gb|EEP23765.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271] Length = 234 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 132/228 (57%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+K LA ++L L+ E + + G G+E E+D I+LDL L ++ G E Sbjct: 8 RVLIIEDEKNLARFVDLELQHEGYETAICHDGRKGLETALNQEWDVILLDLMLPELNGLE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K TP+ I++ S+ D+V GL GADDYI KPF EEL+AR+RA+ RR Sbjct: 68 VCRRIRPIK-DTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRRIDH 126 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 QS + +L + + V+ I LT +EY+++ L NT +++E+ Sbjct: 127 NKEEKNQSQQSSVKYRNLVIEKKGRIVKRDDQVIDLTKREYELLLYLMENLNTVMSREVL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + E E ++DV+I LR K+ + G +YI+TV G GYV+R Sbjct: 187 LDKVWGYKTEVETNVVDVYIRYLRNKI-DVPGKDSYIQTVRGTGYVMR 233 >gi|121535649|ref|ZP_01667454.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121305753|gb|EAX46690.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 224 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 137/225 (60%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD AL ++ +L EN+ V G++G+ L + D ++LD+ L +I G Sbjct: 1 MRILVVEDDHALREAVVALLTEENYLVDEAATGDEGLYLAEQGIHDLLVLDIMLPEISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ +R + P+ +L+ S+ D+V GL++GADDY++KPF EL+ARI+A++RRS Sbjct: 61 EIIKRVRATGHTMPILLLTARDSVADRVNGLETGADDYLTKPFAIPELLARIKALLRRSG 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I G + ++ + V+G + LT KEY+++E L L K LT+E + ++ Sbjct: 121 NLGKDGKISYGGVVIDGKLRDGFVEGQALGLTAKEYELLEFLMLNKEQILTREQIFDRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + ++D++I LRKKL+ + N I+T+ G G++L+E Sbjct: 181 GFASETTISVVDLYIHYLRKKLA-SFDRDNLIQTIRGAGFMLKEK 224 >gi|83644677|ref|YP_433112.1| response regulator [Hahella chejuensis KCTC 2396] gi|83632720|gb|ABC28687.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 223 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 135/224 (60%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED + L S+ + L + V GE+G+ L +D IILD+ L + GF Sbjct: 1 MRLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + V +L+ +ED+V GL+SGADDY+ KPF+ +EL+ARI A++RR Sbjct: 61 ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +L+ G+L++NL +K V V G + L +EY ++E L+L ++ ++++ + +YD Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + EP ++D I LRK + + ++I T G GY +R++ Sbjct: 181 DKIEPMSNVVDSAISSLRKMIDH-KDRPSFILTRRGHGYQIRQS 223 >gi|134292766|ref|YP_001116502.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135923|gb|ABO57037.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 221 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 124/219 (56%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V G L + FD ++LD L + GF Sbjct: 1 MRILVVEDDAEIGAAIRARLTRLGHAVDHETDGATANSLLRVERFDLVVLDANLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR A +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L ++ ++ E+ G + L+ +E+ ++E+L+ R +K+ LN L+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++R+KL G I T G GY Sbjct: 181 FGNEPSANAVEQYVTRVRRKLH---GSSVEIRTARGMGY 216 >gi|206562479|ref|YP_002233242.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198038519|emb|CAR54477.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 221 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L + FD ++LD L + GF Sbjct: 1 MRILVVEDDAEIGAAIRGRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L ++ ++ E+ G + L+ +E+ ++E+L+ R +KE LN L+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++R+KL G I T G GY Sbjct: 181 FGNEPTANAVEQYVTRVRRKLQ---GSSVEIRTARGMGY 216 >gi|227524667|ref|ZP_03954716.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088151|gb|EEI23463.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 228 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K LA +EL LK E ++ V G G++ FD I+LDL L ++ G E Sbjct: 3 RILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR K +TP+ +++ S+ D+V G GADDYI KPF EEL+ARIRA++RR Sbjct: 63 VARRLREKK-NTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ + DL++ +++ V I+LT +EY+++ L + L +++ L Sbjct: 122 ENDQQKSSKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ N G +YI+TV G GYV+R Sbjct: 182 TKVWGYDSEVETNVVDVYIRYLRNKI-NRPGENSYIQTVRGTGYVMR 227 >gi|331017288|gb|EGH97344.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 222 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D I+LDLGL +PG Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLQRWRGKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + + L+++ + V G I LT E++++ L L+K HLY Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGTDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG +E + +I+V + LR+KL G+ IET G+GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVIETRRGQGYL 216 >gi|289679223|ref|ZP_06500113.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] Length = 222 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D I+LDLGL +PG Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLQHWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + + L+++ + V G I LT E++++ L L+K HLY Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG +E + +I+V + LR+KL G+ +ET G+GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216 >gi|91789521|ref|YP_550473.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91698746|gb|ABE45575.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 219 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 132/222 (59%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + ++ +L++E++ V +V D G + + ++D ++LDLGL G Sbjct: 1 MRLLLVEDDAMIGETVLHVLRAEHYAVDWVRD-GSMADQALRSEQYDLVLLDLGLPQRDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVLR+LR + +TPV + + +I D++ GL +GADDY+ KP++ +EL+ARIRA++RRS Sbjct: 60 LEVLRSLRARRNATPVLVATARDAIGDRIAGLDAGADDYVVKPYDIDELLARIRALIRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + +S+N + V G + L+ +E+ ++E L R L++ L+ Sbjct: 120 AGRGEPVFEHKGVSLNPATREASVHGQPVSLSAREWAVLEALLARPGVVLSRAQLEEKLF 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +DE ++V+I +RKKL N I+TV G GY++ Sbjct: 180 SWKDEVSSNAVEVYIHGVRKKLGN-----ELIQTVRGLGYLV 216 >gi|59713619|ref|YP_206394.1| putative transcriptional regulatory protein [Vibrio fischeri ES114] gi|59481867|gb|AAW87506.1| putative transcriptional regulatory protein [Vibrio fischeri ES114] Length = 225 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 135/224 (60%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ + L+ E F V +D G++G+ + ++ IILD L ++ G Sbjct: 1 MKILVIEDDQTTRDFVTKALEQEGFIVDSSDDGKEGLMMAISCDYQLIILDRMLPNLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L A+R +TPV ILS + S++ +V GL +G+DDY++KPF EL+ARI I+RR+R Sbjct: 61 KILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALAELLARINIILRRNR 120 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + + +L++NL ++ V + + + L KE+ ++ L+ + +++ Sbjct: 121 PIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAA 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D +P+ +IDV I KLRKKL N +G + IETV G GYVLR Sbjct: 181 WDYHFDPKTNVIDVHIAKLRKKLDN-SGAVDLIETVRGAGYVLR 223 >gi|332705648|ref|ZP_08425724.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332355440|gb|EGJ34904.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 656 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 130/231 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L S+++ V + G++GI L + ++D I+LD L + G Sbjct: 1 MRILLVEDDEGIAKVVTAALASQHYQVDLATDGDEGIALAEILKYDLILLDWMLPKLTGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + LR A+ TP+ +L+ + +KV L +GADDY+ KP + EL+ARIRA++RRS Sbjct: 61 DLCKQLRNARDRTPIILLTAQDTSTNKVEALDAGADDYLVKPLDIPELLARIRAVLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ V +HLT KEY ++EL + ++ L++L+ Sbjct: 121 TPLLPVLEWGLLHLDPSNCQVSYDQELLHLTPKEYGLVELFLRNPHRIFSQSFLLDNLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + P + I LR+KL A + IETV+G GY LR+ ++ + + Sbjct: 181 FEEPPTENAVRAHIKSLRRKLKQAGAKNDLIETVYGLGYRLRQPPEEGSAQ 231 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + + +L+ F + + + + E + D +ILD+ + + G + Sbjct: 524 KLLIVDDDPQILDQLRTVLEPWGFQLTLLNDPQQFWETIEQCTPDLLILDVQMPEFSGID 583 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R PV LS E + +GADDY+ KP EL+AR+ + RS Sbjct: 584 LCQVVRNDPRWAELPVLFLSAAQDAETVQQVFMAGADDYVQKPIRAPELLARVLNRIERS 643 Query: 120 R 120 + Sbjct: 644 Q 644 >gi|322434161|ref|YP_004216373.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321161888|gb|ADW67593.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 226 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 132/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ ++ L +E + V V+ G +G+EL + + +D IILD+ L + G Sbjct: 1 MRILVVEDEPKVSSFVQRGLVAERYAVDVSADGREGLELAQAFPYDLIILDMMLPRMDGG 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R PV +L+ S+EDKVR ++GADDY++KPF EL+ R +A++RR Sbjct: 61 EILQRIRRTNTCVPVLMLTARDSVEDKVRMFENGADDYLTKPFAFAELLVRSKALLRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S + G+L ++ + V+ G RI LT KEY ++E L L++ M + H++D Sbjct: 121 VNRSSTMTVGELELDRLTQQVKRAGKRIELTAKEYSLLEYLMQNAERVLSRNMIIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I+DV++ LR K+ + K I TV G GY++R Sbjct: 181 QSFDGITNIVDVYVRHLRAKVDDGHIIK-LIRTVRGSGYMIR 221 >gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis HKU09-01] gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis HKU09-01] gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590] Length = 219 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 130/220 (59%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA +EL L EN+ V + + G+ G++ +D IILD+ L I G E+ Sbjct: 4 ILIVEDEQNLARFLELELTHENYKVDIENDGQSGLDKALTKTYDLIILDIMLPHINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + +TP+ I++ S DKV GL GADDYI KPF EEL ARIRAI+RR Sbjct: 64 CRRIR-QQYTTPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEELFARIRAILRRQ--P 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + +I + ++ +A V V G ++ LT EY ++ +L+ +N L +E L+H++ Sbjct: 121 QKDVIDINGIIIDKNAFEVTVDGTQLDLTKTEYDLLYVLAENRNHVLQREQILDHVWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL + IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLK-PFNKERTIETVRGVGYVIR 219 >gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 233 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F+V G + K + D ++LD+ L D+ GFE Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALTAAKDHRPDLVVLDVMLPDLDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R TPV L+ + +DK+RGL G DDY++KPF+ EEL ARIRA++RRS Sbjct: 69 VIRMMREGGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSAS 128 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + DL ++ +A V G R+ L+ E++++ L L N L+K L+H++ Sbjct: 129 GEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++ +I LR+K+ N I T+ G GYVLR+ A Sbjct: 189 NYDFRGDDNIVESYISYLRRKVDNTQ--PRLIHTLRGVGYVLRKPA 232 >gi|170702017|ref|ZP_02892936.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170133079|gb|EDT01488.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 224 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G LS + ++ + G + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I++++ +LRKKL N I T+ G GY+L A Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKA 222 >gi|71734983|ref|YP_275297.1| DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485460|ref|ZP_05639501.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71555536|gb|AAZ34747.1| DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323806|gb|EFW79890.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320327945|gb|EFW83950.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330881161|gb|EGH15310.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330889640|gb|EGH22301.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330989766|gb|EGH87869.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010708|gb|EGH90764.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 222 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D I+LDLGL +PG Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + + L+++ ++V G I LT E++++ L L+K HLY Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG +E + +I+V + LR+KL G+ +ET G+GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216 >gi|238797369|ref|ZP_04640869.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC 43969] gi|238718800|gb|EEQ10616.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC 43969] Length = 220 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 130/226 (57%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDDK + I+ L F+V + TD G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDKLIGDGIKAGLIKMGFSVDWFTD-GQQGLSALASAPYDAVVLDLSLPGMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++LR R PV IL+ +++++V GLQ GADDY+ KPF E+VAR++A++RR Sbjct: 60 LDILRTWRRNGHDEPVLILTARDALQERVAGLQQGADDYLCKPFALIEVVARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G AQ+++ G +S++ +V QG ++L KE+ ++ELL + L + + +Y Sbjct: 120 YGQAQTVLTHGSISLDPINLSVTHQGEPLYLKPKEFALLELLLRNEGRVLPRSLIEEKIY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + DE I+V I LRKK G ++I TV G GY L E A Sbjct: 180 NWDDEVSSNAIEVHIHHLRKKF-----GSHFIRTVHGIGYTLGEIA 220 >gi|172059097|ref|YP_001806749.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171991614|gb|ACB62533.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 225 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E+F V GE + K +DA++LD+ L I G Sbjct: 1 MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + +V GDL + + L +E+ ++E L L++N T++K ++ ++ Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCGDAVLALRRREHVILETLMLQQNKTVSKARLMDSVFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKD 227 DEP ID++I +LRK L+ + I T+ G GY+LR ++A+D Sbjct: 181 LDDEPSADAIDIYIHRLRKHLALSTA---EIITLRGLGYILRAKSAQD 225 >gi|254974251|ref|ZP_05270723.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255091648|ref|ZP_05321126.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255313376|ref|ZP_05354959.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255516063|ref|ZP_05383739.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255649160|ref|ZP_05396062.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260682337|ref|YP_003213622.1| two-component response regulator [Clostridium difficile CD196] gi|260685936|ref|YP_003217069.1| two-component response regulator [Clostridium difficile R20291] gi|306519270|ref|ZP_07405617.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260208500|emb|CBA61123.1| two-component response regulator [Clostridium difficile CD196] gi|260211952|emb|CBE02450.1| two-component response regulator [Clostridium difficile R20291] Length = 229 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 126/229 (55%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDDK + + L SEN+ V G IE+ K Y FD I+LDL L GF Sbjct: 1 MDILLVEDDKNIREMVYDFLISENYFVKTAVDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVL+ +R + PV I + S DK+ GL GADDYI+KPF+ EL+ARI+A +RR Sbjct: 61 EVLKYIRSVSV-VPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR +I DL +N+ V G ++LT E+++++LL+ + +KE Sbjct: 120 VYSSSRNSEDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N ++ +++ I +LR KLS+ NYI+T+WG GY + E Sbjct: 180 YNTIWKEPYYGNENVLNTHINRLRNKLSDGIEKNNYIKTLWGIGYKMEE 228 >gi|209516256|ref|ZP_03265114.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209503367|gb|EEA03365.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 228 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 133/230 (57%), Gaps = 2/230 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L + + V V GE+G+ L +++D I+LD+ L GF Sbjct: 1 MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMYLATEFDYDVIVLDVMLPKRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ALR+ K STPV +L+ + D+VRGL+ GADDY++KPF+ ELV R+ A+ RR+R Sbjct: 61 SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT KE+Q++ +L+ R+ L+K ++D Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + +++ I +LR KL K + TV G GYVL + E+ Sbjct: 180 VNFDSHTNVVETAIKRLRAKLDGPFPSK-LLHTVRGMGYVLEVRGEAESS 228 >gi|110834226|ref|YP_693085.1| DNA-binding heavy metal response regulator [Alcanivorax borkumensis SK2] gi|254429959|ref|ZP_05043666.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|110647337|emb|CAL16813.1| DNA-binding heavy metal response regulator, putative [Alcanivorax borkumensis SK2] gi|196196128|gb|EDX91087.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 222 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L + + L+ F+V + L + + A ILDLGL D G Sbjct: 1 MRLLLVEDDYLLTNGLSAQLEKAGFSVDTARTAREARHLGQQESYRAGILDLGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R K+S PV IL+ +DKV GL++GADDY++KPF EEL+AR+ AIVRRS Sbjct: 61 DVLKQWRTHKVSFPVLILTARGDWQDKVNGLKAGADDYLAKPFQTEELIARLHAIVRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + G ++ + +T+ H LTG E++++ L R +KE L+ LY Sbjct: 121 GRIMDTLTAGRFELDENRQTLRAGDETEHSLTGTEFRLLRCLMSRPGQVFSKEQLLDQLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D P +I+ ++ +LRK + G + I+T G+GY+ +++ Sbjct: 181 SIDDIPSENVIEAYVRRLRKLV-----GPDTIKTRRGQGYLFDADSR 222 >gi|254519605|ref|ZP_05131661.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226913354|gb|EEH98555.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 132/220 (60%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED++ L+ ++ +L + ++V GEDG++ +D I+LD L + G Sbjct: 1 MKLLLVEDERELSEALFQILTNNKYSVDAVYDGEDGLDYALTGVYDVIVLDTMLPKLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + ISTPV +L+ S IED+VRGL GADDY++KPF EEL+AR+R+I RR Sbjct: 61 SLLKQLRKSGISTPVIMLTAKSQIEDRVRGLDLGADDYLTKPFATEELLARLRSITRRKG 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I+T GD+S+NLD ++V I LT KE+++I+ R ++K+ + L+ Sbjct: 121 NVVNDNILTYGDISLNLDTYDLDVNNENIRLTLKEFEIIKYFMERPKCVVSKDDLITKLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E E I+V+I +RKKL+ + I T+ G GY Sbjct: 181 GFDSEVEYNNIEVYISFIRKKLTYLKSNVS-IVTIRGVGY 219 >gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock3-17] gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock3-17] Length = 224 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+++LA +EL LK E + V V G G+E +D I+LDL L + G EV Sbjct: 4 ILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLPGLNGMEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR K +TP+ +L+ SI D+V GL SGADDY+ KPF EEL+ARIR I RR + Sbjct: 64 CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRREQKE 122 Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L+ DL ++++++T+ I LT KE++++ + N LT+++ L ++ Sbjct: 123 ESKPTLLLAFKDLQLHVESRTLRKNDEIIELTNKEFELLLMFMKNINRVLTRDILLEQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I+DV++ LR KL + + YI+TV G GYV+R Sbjct: 183 GYDAIVETNIVDVYVRYLRNKL-HGVDKEEYIQTVRGAGYVMR 224 >gi|2598275|emb|CAA73687.1| FeuP protein [Brucella suis 1330] Length = 229 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDYI+KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYITKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVVLKLTSHEYRLLSYMMNNMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ G + IETV G GY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRMRSGGEGEA 224 >gi|26987921|ref|NP_743346.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24982631|gb|AAN66810.1|AE016310_2 transcriptional regulatory protein PhoP [Pseudomonas putida KT2440] Length = 225 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + Y FD I+DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGLPGISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L + K+ + LY Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQALALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G +E + +I+V + +LR+KL G K I+TV G GY+ E + Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEGERGFKP-IDTVRGLGYLFTERCR 225 >gi|293603144|ref|ZP_06685578.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|292818538|gb|EFF77585.1| two component response regulator [Achromobacter piechaudii ATCC 43553] Length = 228 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 134/230 (58%), Gaps = 2/230 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ LA ++ L ++ V + G DG+ L D I+LD+ L + GF Sbjct: 1 MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGAHDLIVLDVMLPGVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L A+R A+ +TP+ +L+ ++ED+VRGL+ GADDY+ KPF EL+AR++A++RR R Sbjct: 61 GILAAVR-ARKNTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ DL ++L ++ + G R+ LT KE+ ++ LL R+ L++ ++D Sbjct: 120 AQEPTLLRLADLELDLASRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + +IDV + +LR KL + K + TV G GYVL + + Sbjct: 180 MNFDSDTNVIDVAVRRLRSKLDDPYDTK-LLHTVRGMGYVLESRGQAQPT 228 >gi|290352159|dbj|BAI78790.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IE +K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEYEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI RR Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|323488348|ref|ZP_08093596.1| two component transcriptional regulator, winged helix family protein [Planococcus donghaensis MPA1U2] gi|323398006|gb|EGA90804.1| two component transcriptional regulator, winged helix family protein [Planococcus donghaensis MPA1U2] Length = 228 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 135/224 (60%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD L+ +I+ + + F+ GE+G+ L + FD IILD+ L + G+ Sbjct: 1 MKLLIIEDDPHLSDTIKETTQ-DMFHTQQAFDGEEGLFLAEQNIFDCIILDIMLPYLNGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR I+TPV +L+ I DK++G ++GADDY++KPF++EEL+ R+ AIVRRS Sbjct: 60 EVLKKLRSQNITTPVIMLTAKDGIGDKIQGFKAGADDYLAKPFHREELLLRLEAIVRRSG 119 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q+ + +L +N+ KT ++ + L GK++ ++E L KN LTKE + ++ Sbjct: 120 GELKQNTLSFKELKLNIKNKTAQLGEETVKLNGKQFDLLEYLVNNKNIILTKEQIFDRIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++V+ LRK L + YI+T G GY+L + Sbjct: 180 GFESDTSTTVVEVYASNLRKTLKKFNYDQ-YIKTFRGLGYMLSD 222 >gi|262369588|ref|ZP_06062916.1| two-component system response regulator protein [Acinetobacter johnsonii SH046] gi|262315656|gb|EEY96695.1| two-component system response regulator protein [Acinetobacter johnsonii SH046] Length = 220 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD + A SI+ L+ + ++V + G+ I + + +D ++LD GL G Sbjct: 1 MRILLAEDDASQAESIKTWLEMDGYSVDWVERGDHAILAIEQHHYDCVLLDRGLPHATGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +R +STPV L+ SI D+V GL GA+DY+ KPF+ EEL ARIR +R+ + Sbjct: 61 DILLKVRGKNLSTPVIFLTARDSIRDRVEGLDLGANDYLVKPFSLEELSARIRLQLRQQQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ ++ ++ AK+V G ++LT KE+Q++ L L+ +T+E LY Sbjct: 121 HSSSQVLSYANIQLDPQAKSVTQNGQAVNLTAKEFQILHKLMLKPEYVVTREQLEESLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DE E I+VFI +LRKKL G + I+T+ G GY + ++ Sbjct: 181 WGDEIESNAIEVFIYQLRKKL-----GSHCIKTIRGLGYRMNQD 219 >gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 226 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+K L +E +L E + V + D G G+EL + +D +ILD L G Sbjct: 1 MKILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNYDLLILDWMLPQQSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 ++ + LR +TPV L+ +I+D+V GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 QICQYLRNQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + + DL ++ + + G I L+ KE Q++ L LT E H Sbjct: 121 NFEASNSSKLKSADLELDSENQVAYRHGRTISLSAKEVQLLTLFMTHPGQLLTHEQIYQH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++P ++ + LR+K+ AAG I TV+G+GY EN Sbjct: 181 LWSEGEQPNSNVVPALMRLLRRKIE-AAGETPLINTVYGKGYRFGEN 226 >gi|313499205|gb|ADR60571.1| DNA-binding response regulator [Pseudomonas putida BIRD-1] Length = 220 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL I L+ E + + G G+ + FD +ILDLGL + G Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVGGLHALQHETFDLLILDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR S PV IL+ +++D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI +S++ + V+ G + LT KEY ++ L + T+E LY Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +EPE ++V I LRKKL N I TV G GY++ A Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEVKA 220 >gi|113968960|ref|YP_732753.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114048902|ref|YP_739452.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113883644|gb|ABI37696.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113890344|gb|ABI44395.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 224 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 14/228 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 M++LL+ED+ L +E LK YVTD+ + +E L K ++D +ILD+GL D Sbjct: 1 MKLLLVEDNPMLVSELEKQLKQAG---YVTDITDKAVEADYLVKETQYDCVILDIGLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E+L R ISTPV +L+ S +KV G +GADDY+ KPF+ +EL+ARI+A++ Sbjct: 58 NGLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117 Query: 118 RSRG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R+ G + + G ++++ +TV V H LT E++++++ + L+K Sbjct: 118 RAHGRLNNPSKQLSYGGVTLDEAEQTVSVGEHLYELTAMEFRLLKIFLMSPKKLLSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220 >gi|153947115|ref|YP_001401057.1| DNA-binding heavy metal response regulator [Yersinia pseudotuberculosis IP 31758] gi|152958610|gb|ABS46071.1| DNA-binding heavy metal response regulator [Yersinia pseudotuberculosis IP 31758] Length = 230 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 135/231 (58%), Gaps = 4/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + I L F V V G DG+ L Y++D I+LD+ L + G+ Sbjct: 1 MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL LR +K TPV +LS S++++V+GL+ GADDY+ KPF+ ELVARI+A++RR Sbjct: 61 SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S G S + DL ++L A+ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 SDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +D + + +++V I +LR K+ K + TV G GYVL + +T Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKIDTPYPVK-LLHTVRGMGYVLETRPERQT 229 >gi|152984274|ref|YP_001349554.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7] gi|150959432|gb|ABR81457.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7] Length = 225 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L + V E+ + Y D ++DLGL + G Sbjct: 1 MKLLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVVDLGLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRELRSQGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K V+ + LT EY+++E L + KE + LY Sbjct: 121 GFVQSTIEAGPLLLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E + +I+V + +LR+KL A GG I+TV G+GY+ E + Sbjct: 181 DDEERDANVIEVLVGRLRRKL-EACGGFKPIDTVRGQGYLFTERCR 225 >gi|260600057|ref|YP_003212795.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis z3032] gi|260219404|emb|CBA34756.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis z3032] Length = 231 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 132/220 (60%), Gaps = 1/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ ++ L E + + + G DG+ ++D IILD+ L + G++ Sbjct: 8 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ALR + PV L+ ++ DKV+GL+ GADDY+ KPF+ ELVAR+R ++RR+R Sbjct: 68 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ D++V++ +TV G +IHLTGKEY ++ELL R L + + + +++ Sbjct: 128 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +IDV + +LR K+ + K I TV G GYVL Sbjct: 188 NFDSDTNVIDVAVRRLRSKIDDDFEPK-LIHTVRGAGYVL 226 >gi|222148018|ref|YP_002548975.1| two component response regulator [Agrobacterium vitis S4] gi|221735006|gb|ACM35969.1| two component response regulator [Agrobacterium vitis S4] Length = 224 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + L+ + V GE+G L +DA+ILD+GL + G Sbjct: 1 MRILVVEDDVNLNRQLVEALQEAGYVVDQAMDGEEGHYLGDTEPYDAVILDIGLPTMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A + PV IL+ DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ Sbjct: 61 TVLEKWRSAGRAMPVLILTARDRWSDKVSGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S I G + ++ + V V G + LT E++++ L +++ + H+YD Sbjct: 121 GHASSEIACGPVRLDTKSSKVTVSGKALKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+VF+ +LRKK+ G + IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GLDMIETVRGLGYRIK 217 >gi|241203804|ref|YP_002974900.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857694|gb|ACS55361.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 223 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 125/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPELDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ S I+ G + ++ + V G + LT EY+++ L +++ + H+YD Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LRKK+ G + IETV G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214 >gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus pseudomycoides DSM 12442] gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock1-4] gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock1-4] gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus pseudomycoides DSM 12442] Length = 224 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+++LA +EL LK E + V V G G+E +D I+LDL L + G EV Sbjct: 4 ILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLPGLNGIEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR K +TP+ +L+ SI D+V GL SGADDY+ KPF EEL+ARIR I RR + Sbjct: 64 CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRREQKE 122 Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L+ DL ++++++T+ I LT KE++++ + N LT+++ L ++ Sbjct: 123 ESKPTLLLAFKDLQLHVESRTLRKNDEIIELTNKEFELLLMFMKNINRVLTRDILLEQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I+DV++ LR KL + + YI+TV G GYV+R Sbjct: 183 GYDAIVETNIVDVYVRYLRNKL-HGVDKEEYIQTVRGAGYVMR 224 >gi|23501491|ref|NP_697618.1| DNA-binding response regulator [Brucella suis 1330] gi|161618578|ref|YP_001592465.1| two component transcriptional regulator [Brucella canis ATCC 23365] gi|254703943|ref|ZP_05165771.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|260566808|ref|ZP_05837278.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str. 40] gi|261754595|ref|ZP_05998304.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|23347396|gb|AAN29533.1| DNA-binding response regulator [Brucella suis 1330] gi|161335389|gb|ABX61694.1| two component transcriptional regulator, winged helix family [Brucella canis ATCC 23365] gi|260156326|gb|EEW91406.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str. 40] gi|261744348|gb|EEY32274.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 229 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTELYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ G + IETV G GY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRMRSGGEGEA 224 >gi|319784560|ref|YP_004144036.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170448|gb|ADV13986.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 221 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L I L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRVLVVEDDKDLNRQISDALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G L ++ A +V G + LT E++++ L +++ + HLYD Sbjct: 121 GHASSELTCGPLRLDTKASKADVGGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ +LRKK+ G + IETV G GY +RE Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GIDMIETVRGMGYRMRE 218 >gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8] gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8] Length = 225 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 132/223 (59%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED++ LA I LK E F V V GE+G+ + FD +ILD+ L G+ Sbjct: 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+++R + ++TPV +L+ +S +E +V+GL GADDY+ KPF+ EL+AR+RA++RR Sbjct: 63 EILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL ++ K I LT KEYQ++E L + KN +TKE HL+ Sbjct: 123 ESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE ++ I LRKK+ K I TV G GYV R+ Sbjct: 183 FDDEVFSDVLRSHIKNLRKKVDKGF-KKKIIHTVRGIGYVARD 224 >gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 273 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L+ + + L+ E + V G D + + + DA+ILD+ L DI G Sbjct: 41 LRVLVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIMLPDIDGL 100 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVLR LR PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+R+++RRS Sbjct: 101 EVLRRLRADATDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRSG 160 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ GDL ++ D+ V G I LT E++++ L L+K L+ Sbjct: 161 LVAAKQEPVLAVGDLVLDEDSHEVTRAGQEIRLTATEFELLRYLMRNPRRVLSKAQILDR 220 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + I+++++ LR+K+ AG I TV G GYVL+ Sbjct: 221 VWNYDFGGQANIVELYVSYLRRKID--AGRNPMIHTVRGAGYVLK 263 >gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 233 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F+V G + K + D ++LD+ L D+ GFE Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR TPV L+ + +DK+RGL G DDY++KPF+ EEL ARIRA++RR+ Sbjct: 69 VIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTAN 128 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A S + DL ++ + V G R+ L+ E++++ L L N L+K L+H++ Sbjct: 129 GDQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++ +I LR+K+ N I T+ G GYVLR+ A Sbjct: 189 NYDFRGDDNIVESYISYLRRKVDNTQ--PRLIHTLRGVGYVLRKPA 232 >gi|225874253|ref|YP_002755712.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794322|gb|ACO34412.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] Length = 230 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIEL-MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL++ED++ LA +I M + + V + G G +LC E+D ++LDL L + G Sbjct: 1 MRILVVEDEERLAGNIAAAMREGPGWAVDLAHSGLAGRDLCLQTEYDLVLLDLMLPGLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR +R I+TPV +L+ ++ + L +GADDY++KPF+ EL+AR +A++RR Sbjct: 61 LGVLRDMRGKGIATPVLVLTAVAEKASVIELLNAGADDYLAKPFDLGELLARAKALIRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + +I G L ++ K+V G I L+ EY+++E L R + ++K+ L HLY Sbjct: 121 KGVSHPVINIGALVLDTVEKSVTCHGIPIELSPTEYRVLEFLGHRPRSVVSKQTLLEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E +I+ I LR+KL N G +IET+ GRGY L Sbjct: 181 DYNWEHHSNVIEAHISNLRRKL-NQQEGDAWIETLRGRGYRL 221 >gi|78063373|ref|YP_373281.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77971258|gb|ABB12637.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 221 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L + FD ++LD L + GF Sbjct: 1 MRILVVEDDAEIGAAIRNRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L ++ ++ E+ G + L+ +E+ ++E+L+ R +K+ LN L+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++RKKL G I T G GY Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQ---GSSVEIRTARGMGY 216 >gi|223936259|ref|ZP_03628172.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895121|gb|EEF61569.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 126/219 (57%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K +A + L++E F V V + G G E+ Y +D +ILDL L + G Sbjct: 1 MRLLLVEDEKKVAEFVARGLRAERFAVDVCNDGLSGYEMASTYNYDLMILDLMLPTLSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR PV +L+ + +K+ ++GADDY++KPF EL+ R++A++RR Sbjct: 61 EILKRLRKQSSQVPVLVLTARDGMAEKIENFEAGADDYLTKPFAFAELLVRVKALLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S++ GDL ++ + V G +I LT KEY ++E L+ L++ M + H++D Sbjct: 121 ANRSSVLHVGDLEIDRLTQQVRRGGKKIDLTSKEYGLLEYLAANAGRVLSRTMIVEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E I+DV++ LR K+ + K I TV G GY Sbjct: 181 ESFEGLTNIVDVYVRHLRSKVDSGYPCK-LIRTVRGVGY 218 >gi|315179960|gb|ADT86874.1| DNA-binding response regulator [Vibrio furnissii NCTC 11218] Length = 219 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L I L+ +V +L +DGI+ E+D I+LDLGL + Sbjct: 1 MKILVVEDDARLGEQIIASLEQTG---WVPELSQDGIDALYRATSEEWDVIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ + V +G I+LT EY+++ +++ + H Sbjct: 118 RASGNASPVMQIGDLSLDTRSSKVMWRGQAINLTALEYKVVAYFMHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + I+VFI ++RKK++ N I+TV G GY L Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PNIIKTVRGLGYQL 216 >gi|184158807|ref|YP_001847146.1| response regulator [Acinetobacter baumannii ACICU] gi|332875177|ref|ZP_08443010.1| putative transcriptional regulatory protein QseB [Acinetobacter baumannii 6014059] gi|183210401|gb|ACC57799.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|322507380|gb|ADX02834.1| Putative two-component response regulator [Acinetobacter baumannii 1656-2] gi|323518722|gb|ADX93103.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332736621|gb|EGJ67615.1| putative transcriptional regulatory protein QseB [Acinetobacter baumannii 6014059] Length = 220 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 129/219 (58%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD++ A SI+ L+ + + V + G+ + + +++D I+LD GL + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + + PV ++ SI D+V GL GA+DY+ KPF+ EEL ARIRA +R+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + QS++ GDL ++ AK V G I LT KE+Q++ L + +T++ LY Sbjct: 121 LNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E I+VFI +LRKK+ G + I+T+ G GY Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214 >gi|38347978|ref|NP_941227.1| two-component-system response regulator involved in copper resistance [Serratia marcescens] gi|152973495|ref|YP_001338546.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156936353|ref|YP_001440269.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894] gi|157412136|ref|YP_001481477.1| PcoR [Escherichia coli APEC O1] gi|168998674|ref|YP_001687942.1| PcoR [Klebsiella pneumoniae NTUH-K2044] gi|170021402|ref|YP_001726356.1| two component heavy metal response transcriptional regulator [Escherichia coli ATCC 8739] gi|170767051|ref|ZP_02901504.1| transcriptional activator protein IrlR [Escherichia albertii TW07627] gi|238910409|ref|ZP_04654246.1| transcriptional regulatory protein PcoR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|295697854|ref|YP_003602511.1| two component heavy metal response transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|296105206|ref|YP_003615352.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|300916232|ref|ZP_07132982.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|329999923|ref|ZP_08303582.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] gi|13632798|sp|Q47456|PCOR_ECOLX RecName: Full=Transcriptional regulatory protein pcoR gi|619132|emb|CAA58529.1| pcoR [Escherichia coli] gi|38259455|emb|CAE51683.1| probable two-component-system response regulator involved in copper resistance [Serratia marcescens] gi|99867161|gb|ABF67806.1| PcoR [Escherichia coli APEC O1] gi|150958287|gb|ABR80316.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156534607|gb|ABU79433.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894] gi|169756330|gb|ACA79029.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|170124489|gb|EDS93420.1| transcriptional activator protein IrlR [Escherichia albertii TW07627] gi|295059665|gb|ADF64403.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059966|gb|ADF64703.1| two component heavy metal response transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|300416468|gb|EFJ99778.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|309700444|emb|CBI99735.1| putative transcriptional regulatory protein PcoR [Escherichia coli ETEC H10407] gi|322614044|gb|EFY10980.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617936|gb|EFY14829.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625450|gb|EFY22276.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629915|gb|EFY26688.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632196|gb|EFY28947.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636453|gb|EFY33160.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322644691|gb|EFY41227.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651287|gb|EFY47671.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652800|gb|EFY49139.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659102|gb|EFY55354.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663196|gb|EFY59400.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668683|gb|EFY64836.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674513|gb|EFY70606.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678281|gb|EFY74342.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682462|gb|EFY78483.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684175|gb|EFY80181.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192269|gb|EFZ77501.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196304|gb|EFZ81456.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201894|gb|EFZ86957.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206437|gb|EFZ91398.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212030|gb|EFZ96857.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216935|gb|EGA01658.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220302|gb|EGA04756.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224349|gb|EGA08638.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228277|gb|EGA12408.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233455|gb|EGA17548.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237083|gb|EGA21150.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243702|gb|EGA27718.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246055|gb|EGA30042.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250832|gb|EGA34710.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257672|gb|EGA41358.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261881|gb|EGA45448.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267727|gb|EGA51209.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268607|gb|EGA52074.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323974974|gb|EGB70084.1| heavy metal response regulator [Escherichia coli TW10509] gi|328538134|gb|EGF64293.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] Length = 226 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 132/220 (60%), Gaps = 1/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ ++ L E + + + G DG+ ++D IILD+ L + G++ Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ALR + PV L+ ++ DKV+GL+ GADDY+ KPF+ ELVAR+R ++RR+R Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ D++V++ +TV G +IHLTGKEY ++ELL R L + + + +++ Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +IDV + +LR K+ + K I TV G GYVL Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDFEPK-LIHTVRGAGYVL 221 >gi|227821352|ref|YP_002825322.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227340351|gb|ACP24569.1| two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 223 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 125/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L + LK + V GE+G L +DAIILD+GL ++ G Sbjct: 1 MRILIIEDDVNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAIILDIGLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L R + PV IL+ DKV G+ +GADDY++KPF+ +E++ARIRA++RR+ Sbjct: 61 TALERWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVQEVLARIRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S IV G + ++ V G + LT E++++ L +++ + H+YD Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVGGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I+VFI +LRKK+ N + IETV G GY ++ Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGN-----DLIETVRGLGYRMQ 217 >gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium Broad-1] gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium Broad-1] Length = 244 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ +A I + L+ E + V G + + + DAI+LD L D G Sbjct: 19 LRVLVVDDEVNIAELIMMALRYEGWEVAAAHTGTKAVSAARDFTPDAIVLDWMLPDFDGL 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVLR +R + PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+RA++RR Sbjct: 79 EVLRRVRSTNPAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRALMRRAG 138 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +R S+I GDL+++ D++ V G I LT E++++ L L+K L+ Sbjct: 139 ATRIEEHSVIHVGDLTMDEDSREVRRAGEEISLTATEFELLRFLMRNPRRVLSKAQILDR 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LRKK+ AG + I T+ G GYVL+ Sbjct: 199 VWSYDFGGQANVVELYISYLRKKID--AGREPMIHTMRGAGYVLK 241 >gi|81428113|ref|YP_395112.1| two-component response regulator transcriptional regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104599|gb|AAD10261.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609754|emb|CAI54800.1| Two-component system, response regulator (possibly involved in phosphate regulation) [Lactobacillus sakei subsp. sakei 23K] Length = 237 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 133/234 (56%), Gaps = 9/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + L+ E+F V G + + +FD IILDL L + G V Sbjct: 4 ILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGIAV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R AK+ TP+ IL+ + DK+ GL+ GADDY++KPF+ E++ARIRAI RR+ Sbjct: 64 TKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTTQP 123 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A IV GDLSV+ + H++HLT KE++++ R N ++E L Sbjct: 124 IEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREKLL 183 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 N ++ G D P E +++D+ + LR+K+ + Y++TV G GY L + A D+ Sbjct: 184 NAVW-GFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPAHDQ 236 >gi|28896527|ref|NP_802877.1| two-component response regulator (CsrR/CovR) [Streptococcus pyogenes SSI-1] gi|28811781|dbj|BAC64710.1| putative two-component response regulator (CsrR/CovR) [Streptococcus pyogenes SSI-1] Length = 228 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + V V G +G+E EFD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRAI R Sbjct: 64 VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFCRQDI 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S + DL +N ++V I LT +EY ++ +L N +T+E L++ Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227 >gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 223 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 133/222 (59%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V VT G DGI + K D +ILD+ L G+ Sbjct: 1 MKILVIDDDIKICEVIKLYLEKEGFEVVVTHNGMDGISVFKNEMPDLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R LR KIS P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+ Sbjct: 61 EVCRELR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +G + ++V +L+VNL V+++ I + KE +++ L+ N T+E L+H Sbjct: 119 QGEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDH 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV I ++R+K+ N I+TVWG GY Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIENNKYPWK-IKTVWGVGY 219 >gi|254695359|ref|ZP_05157187.1| DNA-binding response regulator [Brucella abortus bv. 3 str. Tulya] gi|261215731|ref|ZP_05930012.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260917338|gb|EEX84199.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 225 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57 MRI+LIEDD L ++ + +E V +V+ D D +E ++ D ++LDL L D Sbjct: 1 MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARY---DLVLLDLMLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G LR LR STPV IL+ + I D+++GL +GADDY++KPF+ EL AR+ A+ R Sbjct: 58 QGLSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G+ LI G L ++L AK+V G + LT +E+ ++E TL+K H Sbjct: 118 RYSGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY E E ++V + +LRKKL +A IETV G GY L Sbjct: 178 LYSFNTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216 >gi|172063171|ref|YP_001810822.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171995688|gb|ACB66606.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 224 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G LS + ++ + G + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLGGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I++++ +LRKKL N I T+ G GY+L A Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKA 222 >gi|38639703|ref|NP_943472.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae] gi|218697172|ref|YP_002404839.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989] gi|38016801|gb|AAR07822.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae] gi|218353904|emb|CAV00324.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989] gi|238549690|dbj|BAH66041.1| copper resistance two-component system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 228 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 132/220 (60%), Gaps = 1/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ ++ L E + + + G DG+ ++D IILD+ L + G++ Sbjct: 5 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ALR + PV L+ ++ DKV+GL+ GADDY+ KPF+ ELVAR+R ++RR+R Sbjct: 65 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ D++V++ +TV G +IHLTGKEY ++ELL R L + + + +++ Sbjct: 125 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +IDV + +LR K+ + K I TV G GYVL Sbjct: 185 NFDSDTNVIDVAVRRLRSKIDDDFEPK-LIHTVRGAGYVL 223 >gi|330960611|gb|EGH60871.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 225 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H++ L V E+ + + D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHNLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L L + KE + LY Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL ++ K IETV G GY+ E Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSSVAFKP-IETVRGMGYLFNE 222 >gi|330818169|ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3] gi|327370562|gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3] Length = 233 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK +A + LK++ F V GE + +D ++LDLGL G Sbjct: 14 MRILLVEDDKMIAEGVRKALKADGFAVDWVQDGEAALTAIGGETYDLMLLDLGLPKRDGV 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 74 DVLRTLRSRGHALPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 133 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++S+I G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 134 GRSESVIRHGALTLDPASHQVTLDGAAVALSAREFALLEALLARPGAVLSKSQLEEKMYG 193 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL G + I V G GY++ Sbjct: 194 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 229 >gi|218674674|ref|ZP_03524343.1| two-component response regulator protein [Rhizobium etli GR56] Length = 222 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 130/222 (58%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA + L+ + + + GED L K E+ A+ILDL L + G Sbjct: 1 MRLLVVEDNKDLAAWLGKALRQAQYTIDIAYDGEDAEHLLKVAEYSAMILDLSLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + P+ IL+ +S++ +V GL SGADDY++KPF EL ARIRA+VRR + Sbjct: 61 TLLKRLRQSGNKLPIIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S I G+L + + V+G + LT +EY ++E L ++ T++K ++ Sbjct: 121 DRASSEITVGNLRFSGGTRQFFVEGEPLQLTPREYAVLEQLVMKLGNTVSKAALSESVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DE + I++++ +LRKKL ++ I T+ G GY+LR Sbjct: 181 FDDEADPSAIEIYVHRLRKKLEASS---VQIATLRGLGYLLR 219 >gi|209549867|ref|YP_002281784.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535623|gb|ACI55558.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 222 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ L+ I +L+SENF V + GED + FD ILDLGL I G Sbjct: 1 MRVLLVEDDEDLSGRIAAVLRSENFVVDIARNGEDALHAGLTELFDVAILDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R + PV +L+ DKV ++GADD+++KPF EELV R+RA+VRR+ Sbjct: 61 SVLKEWREGSRNLPVLVLTARDGWPDKVASFKAGADDFLAKPFKVEELVLRLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G L + T E+ G + LT E++++ L LRK + + +YD Sbjct: 121 GHAAARLTCGALVFDAQLGTFELDGLPLKLTALEWRVLSCLMLRKEMIVDRRELTERVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G E + I+V I +LRKKL G + IETV GRGY+L A Sbjct: 181 GDAEVDSNSIEVIIARLRKKL-----GGDRIETVRGRGYMLTAAA 220 >gi|254719962|ref|ZP_05181773.1| DNA-binding response regulator [Brucella sp. 83/13] gi|265984972|ref|ZP_06097707.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306837250|ref|ZP_07470137.1| DNA-binding response regulator [Brucella sp. NF 2653] gi|264663564|gb|EEZ33825.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306407654|gb|EFM63846.1| DNA-binding response regulator [Brucella sp. NF 2653] Length = 225 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57 MRI+LIEDD L ++ + +E V +V+ D D +E ++ D ++LDL L D Sbjct: 1 MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYVESARY---DLVLLDLMLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G LR LR STPV IL+ + I D+++GL +GADDY++KPF+ EL AR+ A+ R Sbjct: 58 QGLSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G+ LI G L ++L AK+V G + LT +E+ ++E TL+K H Sbjct: 118 RYSGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY E E ++V + +LRKKL +A IETV G GY L Sbjct: 178 LYSFDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216 >gi|124265269|ref|YP_001019273.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258044|gb|ABM93038.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 223 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD+ LA + L+ + V G + +EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRTLRKGGYAVDQVGSGSEADAALADHEFDLVILDLGLPKLHGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R TPV IL+ S+E +V+GL GADDY++KPF +EL AR+RA+ RR Sbjct: 61 EVLRKMRARGTVTPVLILTAADSVEQRVKGLDLGADDYMAKPFALQELEARVRALTRRGL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G LS + + + I L+ +E ++E+L R ++K+ + L + Sbjct: 121 GTASAIIKHGPLSFDATGRVAYLNDQMIELSARELSLLEVLLQRAGRLVSKDQLVERLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 DE I+V+I +LRKK+ G I TV G GY L + A Sbjct: 181 WGDEVSNNAIEVYIHRLRKKIEQ---GPVRIATVRGLGYCLEKIA 222 >gi|255528289|ref|ZP_05395103.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255508024|gb|EET84450.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 224 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+K L++++ +LK N++V G D +E +D IILD+ + + G Sbjct: 1 MRILLAEDEKELSNALVAILKHNNYSVDAVYNGADALEYGLSQNYDVIILDIMMPKMNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L LR I TP+ +L+ + IED++ GL +GADDY+SKPF EL+AR+RA+ RR Sbjct: 61 ETLENLRKKGIHTPILMLTAKAEIEDRIVGLDAGADDYLSKPFAMGELLARVRAMTRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G++S+N + + + + L KE+QM+E+L ++ E F+ ++ Sbjct: 121 EFTPNLVKVGNISLNKENYELSNEKSSLRLGNKEFQMLEMLMSNPKCLISTEQFMERIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E+ ++ V+I LRKKL+ + I+ G GY L E Sbjct: 181 YDAEAEINVVWVYISYLRKKLA-SLNANIKIKAGRGIGYTLEE 222 >gi|167035223|ref|YP_001670454.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166861711|gb|ABZ00119.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 241 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + Y FD I+DLGL I G Sbjct: 17 MKLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIVDLGLPGISGL 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 77 ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L + K+ + LY Sbjct: 137 GFTQSTIAAGPLVLDLNRKQATLDELPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G +E + +I+V + +LR+KL A G K I+TV G GY+ E + Sbjct: 197 GDEERDPNVIEVLVGRLRRKLEGAHGFKP-IDTVRGLGYLFTERCR 241 >gi|146280784|ref|YP_001170937.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501] gi|145568989|gb|ABP78095.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501] gi|327479051|gb|AEA82361.1| two-component response regulator PhoP [Pseudomonas stutzeri DSM 4166] Length = 225 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H ++ L V E+ + + D ++DLGL I G Sbjct: 1 MKVLVVEDEALLRHHLQTRLGESGHIVDAVPNAEEALYQTHEFNHDLAVIDLGLPGISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRSRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+ I G L ++L+ K G + LT EY+++E L + + KE + LY Sbjct: 121 GFTQATIEAGPLLLDLNRKQATANGEPLALTAYEYRILEYLMRHQQQVVAKERLMEQLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G +E + +I+V + +LR+KL K IETV G GY+ E + Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEAQCAMKP-IETVRGLGYLFTERCR 225 >gi|167584532|ref|ZP_02376920.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 223 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 127/226 (56%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPILAQSLSDALAAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G L+ + ++ + G + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSKVECGPLAFDSVDRSFRLAGEALPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + I++++ +LRKKL N+ I T+ G GY+L A+ Sbjct: 181 LDESVNADAIEIYVYRLRKKLENSGVA---IVTLRGLGYLLEAKAE 223 >gi|299769361|ref|YP_003731387.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1] gi|298699449|gb|ADI90014.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1] Length = 220 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD++ A SI+ L+ + + V + G+ + + +++D I+LD GL + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + + PV ++ SI D+V GL GA+DY+ KPF+ EEL ARIRA +R+ Sbjct: 61 KVLTTIRYKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS++ GDL ++ AK V G I LT KE+Q++ L + +T++ LY Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E I+VFI +LRKK+ G + I+T+ G GY Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSCIKTIRGLGY 214 >gi|117919068|ref|YP_868260.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117611400|gb|ABK46854.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 14/228 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 M++LL+ED+ L +E LK YVTD+ + +E L K ++D +ILD+GL D Sbjct: 1 MKLLLVEDNPMLVSELEKQLKQAG---YVTDITDKALEADYLVKETQYDCVILDIGLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E+L R ISTPV +L+ S +KV G +GADDY+ KPF+ +EL+ARI+A++ Sbjct: 58 NGLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117 Query: 118 RSRG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R+ G + + G ++++ +TV V H LT E++++++ + L+K Sbjct: 118 RAHGRLNNPSKQLSYGGVTLDEAEQTVSVGEHLYELTAMEFRLLKIFLMSPKKLLSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220 >gi|330810822|ref|YP_004355284.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378930|gb|AEA70280.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 222 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D IILDLGL +PG Sbjct: 1 MRLLLVEDHVPLADELMAGLARQGYAVDWLADGRDAVYQGSSEPYDLIILDLGLPGVPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 DVLAQWRAGGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q + + L ++ + V G I LT E++++ L L+K HLY Sbjct: 121 GQVNQPTLKSAGLHLDESRQCVVRDGTDIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DG E + +++V + LR+KL G++ IET G+GY+ A+ Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYLFGGQAQ 222 >gi|66046441|ref|YP_236282.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257148|gb|AAY38244.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330972923|gb|EGH72989.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 222 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D I+LDLGL +PG Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + + L+++ + V G I LT E++++ L L+K HLY Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG +E + +I+V + LR+KL G+ +ET G+GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216 >gi|226944932|ref|YP_002800005.1| Response regulator [Azotobacter vinelandii DJ] gi|226719859|gb|ACO79030.1| Response regulator [Azotobacter vinelandii DJ] Length = 221 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED +LA + L+ + + V G D +D +ILDLGL PG Sbjct: 1 MRLLLVEDSVSLADELVASLQRQGYAVDWLADGRDAARQGACEPYDLMILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR R ++TPV +L+ +S +++ GL++GADDY+ KPF+ EEL RI+A++RR+ Sbjct: 61 EVLREWRAQGLATPVLVLTARASWAERIEGLKAGADDYLCKPFHPEELQLRIQALLRRAH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + G L ++ + V I LT E++++ L L L+K HLY Sbjct: 121 GLANQPQLEAGGLQLDEARQVVRCGTEDIELTAAEFRLLRYLMLHPGQLLSKGQLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG E + +I+V I +LR KL G+ IET G+GY Sbjct: 181 DGETERDSNVIEVHINRLRGKL-----GRTVIETRRGQGY 215 >gi|169632976|ref|YP_001706712.1| putative two-component response regulator [Acinetobacter baumannii SDF] gi|169151768|emb|CAP00583.1| putative two-component response regulator [Acinetobacter baumannii] Length = 220 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 127/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD++ A SI+ L+ + + V + G+ + + Y++D I+LD GL + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQYDYDCILLDPGLPQLAGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + + PV ++ SI D+V GL GA+DY+ KPF+ EEL ARIR +R+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRTQLRKQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS++ GDL ++ AK V G I LT KE+Q++ L + +T++ LY Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E I+VFI +LRKK+ G + I+T+ G GY Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214 >gi|189352929|ref|YP_001948556.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|189336951|dbj|BAG46020.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G L+ + ++ + G + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I++++ +LRKKL N+ I T+ G GY+L A Sbjct: 181 LDESVNADAIEIYVYRLRKKLENSGVA---IVTLRGLGYLLEAKA 222 >gi|115358419|ref|YP_775557.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115283707|gb|ABI89223.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPNLAQSLNDALTAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G LS + ++ + G + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLGGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I++++ +LRKKL N I T+ G GY+L A Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKA 222 >gi|262039513|ref|ZP_06012815.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii F0264] gi|261746494|gb|EEY34031.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii F0264] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 136/222 (61%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K+L I L+ E++ V G+D ++ E+DAIILD+ L ++ G+ Sbjct: 1 MRILVVEDEKSLNEVIVKRLEDEHYGVDWCYNGKDALDNILITEYDAIILDIMLPELNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R I TPV L+ SIED+V+GL SGA+DY++KPF EEL+ARIR ++R+ Sbjct: 61 EVLKTMRSKNIDTPVLFLTAKDSIEDRVKGLDSGANDYLTKPFAFEELLARIRVMLRKDS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ +L+V+ ++ +V I L+ +E+ ++E + + L+K+ H+++ Sbjct: 121 NSSGNVFTVANLTVDTNSHSVFRDDIPIKLSKREFTILEYMIRNRGKILSKDKIEQHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +I+V+I LRKK+ +A I ++G GY+L+ Sbjct: 181 YDYEGGSNVIEVYIRYLRKKI-DADFSPKLIHNIYGVGYILK 221 >gi|317152805|ref|YP_004120853.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316943056|gb|ADU62107.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 232 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 130/229 (56%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ +A ++ L+ E F+V GE+G L FD ++LDL L G Sbjct: 1 MRLLLVEDEREIADFLKARLEGEGFDVVAAVTGEEGFFLANEQVFDVVLLDLTLPGRGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR I+ PV ++SG S+EDKV GL +GADDYI KPF E++ARIR ++RR Sbjct: 61 EVLRMLRRRGINAPVILISGSDSVEDKVAGLDAGADDYIVKPFAFPEVLARIRVVLRRGW 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 L+ GDL+++L + V G I LT +E++++E L +T++M ++ Sbjct: 121 ADQVLLLRCGDLAMDLITRIVTRGGRTIALTAREFELLEYLLRHPGRVVTRDMLARDIWQ 180 Query: 180 -DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D R +IDV I ++RKKL + + + T G G+ L+ D Sbjct: 181 EDTRATNLDNVIDVHIARIRKKLDHGH-ERKLLHTQRGVGFQLKNPELD 228 >gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC 43243] gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC 43243] Length = 234 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 134/233 (57%), Gaps = 12/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L + V GE+ +E+ K +D ++LDL L I G Sbjct: 4 KILVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALEMIKTNTYDMVLLDLMLPKIDGIA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ AR++AI RRS G Sbjct: 64 VCQQVREFS-NVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARMKAIFRRSGG 122 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ +I +G L ++ DA+T+++ G I+LT KE+ ++ELL+ ++E Sbjct: 123 SESEGRQSEAARKVISSGSLKLDCDARTLQISGREIYLTAKEFDLMELLASNPGKVYSRE 182 Query: 173 MFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LN ++ G D P +V+ +DV + +LR+K+ A YI+T WG GY +N Sbjct: 183 SLLNTVW-GYDYPGDVRTVDVHVRRLREKVEPNASDPKYIQTKWGVGYYFGQN 234 >gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL +G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPSGYQKDIQTVRGIGYILKEQ 223 >gi|239502903|ref|ZP_04662213.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB900] Length = 220 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 129/219 (58%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD++ A SI+ L+ + + V + G+ + + +++D I+LD GL + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLTGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + + PV ++ SI D+V GL GA+DY+ KPF+ EEL ARIRA +R+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS++ GDL ++ AK V G I LT KE+Q++ L + + +T++ LY Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPDHIITRDQLEEALYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E I+VFI +LRKK+ G + I+T+ G GY Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214 >gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL +G + I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPSGYQKDIQTVRGIGYILKEQ 228 >gi|77459994|ref|YP_349501.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383997|gb|ABA75510.1| putative two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 222 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L+ + + V G D + +D I+LDLGL +PG Sbjct: 1 MRLLLVEDHVPLADELLAGLQRQGYAVDWLADGRDAVYQGSSEPYDLIVLDLGLPGVPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R ++ PV IL+ S +++ GL++GADDY++KPF+ EEL RI++++RRS+ Sbjct: 61 EVLAQWRAGGLTIPVLILTARDSWAERIEGLKAGADDYLTKPFHPEELYLRIQSLLRRSK 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + L ++ + V G I LT E++++ L L+K HLY Sbjct: 121 GQANQPTLKAAGLHLDEGRQCVVRDGADIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 DG E + +++V + LR+KL GK+ IET G+GY+ A Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GKSVIETRRGQGYLFGGQA 221 >gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 133/223 (59%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ + + L E ++V G +G+++ + D ++LD+ + + GFE Sbjct: 4 RILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR LR +TPV +L+ +E++V+GL +GADDY+ KPF EEL+AR+RA++RR G Sbjct: 64 ALRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKTG 123 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + DL ++ DA+ V G R+ LT KE++++ L L++++ ++ ++ Sbjct: 124 DDSSNHRLTYEDLIMDTDAREVIRSGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++V+I LR+K + GGK I+T+ G GY+LR Sbjct: 184 GYDYSGESNVLEVYIAMLRQK-TEEHGGKRLIQTIRGAGYILR 225 >gi|223934839|ref|ZP_03626758.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223896292|gb|EEF62734.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 236 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD +A + LK F V GE+G ++DA ++D+ L + G Sbjct: 15 MRILVVEDDAKIASFVVNGLKQSGFAVDRCADGEEGHTFAATTKYDAAVVDVMLPKLDGL 74 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR I PV LS +S++D+V+GLQ+G DDY++KPF EL ARI+A++RR+ Sbjct: 75 SLVQRLRKEGIRIPVIFLSAKASVDDRVKGLQAGGDDYLTKPFAFSELHARIQALIRRAS 134 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +T GDL ++L + V G +I L +E+ ++E L +TK M L H++ Sbjct: 135 NATEPTRLTVGDLGLDLLTREVTRGGEKIELQSREFALLEYLMRNTGRAVTKTMILEHIW 194 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ ++DV + +LR K+ K + T+ G GYVL+ Sbjct: 195 DYSFDPQTNVVDVLVFRLRNKIDK---DKKMLHTIRGVGYVLK 234 >gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius HKU10-03] gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius HKU10-03] gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus pseudintermedius ED99] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED++ LA IEL K EN+ V V G G+ ++FD I+LDL L ++ G E Sbjct: 3 KVLIIEDEQNLARFIELEFKHENYEVEVKYDGVSGLNRALQHDFDLILLDLMLPEMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K TP+ +++ I DKV GL GADDYI KPF EEL+AR RA++RR Sbjct: 63 VCKRLRTQK-DTPIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELLARSRALIRRYSD 121 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S ++ + ++ A V Q ++ LT E+ ++ LL+ KN L +E L+H+ Sbjct: 122 ENVSDTNVVEIDGIKIDKSAFHVTYQSEKLELTKTEFDLLLLLAENKNRVLHREQILDHV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E E ++DV+I LR KL K IETV G GYV+R+ Sbjct: 182 WGYESEVETNVVDVYIRYLRNKLKRIDKQK-LIETVRGVGYVIRQ 225 >gi|317493615|ref|ZP_07952036.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918558|gb|EFV39896.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 220 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ + + L +E++ L + ++ IILDLGL D+ G Sbjct: 1 MKILIVEDDELIQQGLAKALGNESYACDCASTAAQAKSLQQVGQYSLIILDLGLPDLDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R + + PV +L+ +IED+V GL +GADDY+ KPF EL AR+RA++RR + Sbjct: 61 SLLRQWRRSGVDVPVLVLTARDAIEDRVEGLDAGADDYLVKPFALVELQARVRALIRRFQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ ++ +NL + V G +I LT KE+ ++ L +R T+ +E+ LY Sbjct: 121 GHSDNLLQVENIILNLSTQQVLFDGSQIELTPKEFALLSRLMMRAGQTVNREILQQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D+ ++V I LR+KL GK I+TV GY L Sbjct: 181 WQDDLSSNTLEVHIHNLRRKL-----GKERIKTVRSVGYRL 216 >gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 222 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED++ L S+ L+ + + GE+G+ELC +D I+LDL L I G Sbjct: 1 MHILIIEDEEQLCRSMAEGLRMDGYETDTCFDGEEGLELCMTENYDLILLDLNLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R +TPV ILS I+DKV GL GA+DY++KPF+ EEL ARIR++ RR Sbjct: 61 EILRQFRTFNTNTPVLILSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ + + V G + LT KE ++E L +N ++ E + HL+D Sbjct: 121 IQEDVCLRCSRITFDTRTREASVDGTPLALTRKESALLEYFLLHRNRIISPEEMIEHLWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G I V I LRKKL A G + I+ G+GY+L E Sbjct: 181 GSVNSFSNSIRVHISSLRKKLRTAL-GYDPIQNKIGQGYILEE 222 >gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM 14469] gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM 14469] Length = 249 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ ED + + I L +E+++V G++ ++ + E+DA+ILD+ + + G Sbjct: 20 VRILVAEDQRDMNRLISNRLAAEHYSVDSCFDGQEALDYLECTEYDAVILDIMMPVMDGL 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR K PV +L+ M SIED+V GL +GADDY+ KPF EEL+AR+R ++R+ Sbjct: 80 QVLRKLRQRKEHVPVLLLTAMDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVMLRKPA 139 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL V++D + V G I L+GKE+ ++ + L++E H+++ Sbjct: 140 AVKTNICTVGDLEVHMDTQQVLRGGKEIKLSGKEFSILRYMVQNAGIVLSREKLEQHIWN 199 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +IDV+I LRKK+ + K I TV G GYVL++ Sbjct: 200 YDYTGSSNVIDVYIRYLRKKIDDGY-EKKLIHTVRGAGYVLKDT 242 >gi|170722475|ref|YP_001750163.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760478|gb|ACA73794.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 220 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 125/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL I L+ E + + G G+ + FD +ILDLGL + G Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR +R S PV IL+ +++D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 ELLRRVRAGGDSLPVLILTARDALDDRITGLDAGADDYLVKPFDLNELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI +S++ + V G + LT KEY ++ L + T+E LY Sbjct: 121 GRAKVLIEHAGVSLDPATQQVHYHGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +EPE ++V I LRKKL N I TV G GY++ A Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEAKA 220 >gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621] gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621] gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K ++V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 228 >gi|22126192|ref|NP_669615.1| two-component transcriptional regulator [Yersinia pestis KIM 10] gi|45441652|ref|NP_993191.1| transcriptional activator [Yersinia pestis biovar Microtus str. 91001] gi|108807379|ref|YP_651295.1| transcriptional activator [Yersinia pestis Antiqua] gi|108811644|ref|YP_647411.1| transcriptional activator [Yersinia pestis Nepal516] gi|149366068|ref|ZP_01888103.1| transcriptional activator [Yersinia pestis CA88-4125] gi|165926520|ref|ZP_02222352.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|165938800|ref|ZP_02227354.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|166009328|ref|ZP_02230226.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166210680|ref|ZP_02236715.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167401418|ref|ZP_02306915.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420362|ref|ZP_02312115.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424664|ref|ZP_02316417.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024423|ref|YP_001720928.1| two component heavy metal response transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|218929111|ref|YP_002346986.1| transcriptional activator [Yersinia pestis CO92] gi|229894710|ref|ZP_04509890.1| transcriptional activator [Yersinia pestis Pestoides A] gi|229897410|ref|ZP_04512566.1| transcriptional activator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898052|ref|ZP_04513203.1| transcriptional activator [Yersinia pestis biovar Orientalis str. India 195] gi|229901922|ref|ZP_04517043.1| transcriptional activator [Yersinia pestis Nepal516] gi|270490895|ref|ZP_06207969.1| transcriptional activator protein Irlr [Yersinia pestis KIM D27] gi|294503927|ref|YP_003567989.1| transcriptional activator [Yersinia pestis Z176003] gi|21959158|gb|AAM85866.1|AE013833_4 putative 2-component transcriptional regulator [Yersinia pestis KIM 10] gi|45436514|gb|AAS62068.1| transcriptional activator [Yersinia pestis biovar Microtus str. 91001] gi|108775292|gb|ABG17811.1| transcriptional activator [Yersinia pestis Nepal516] gi|108779292|gb|ABG13350.1| transcriptional activator [Yersinia pestis Antiqua] gi|115347722|emb|CAL20637.1| transcriptional activator [Yersinia pestis CO92] gi|149292481|gb|EDM42555.1| transcriptional activator [Yersinia pestis CA88-4125] gi|165913163|gb|EDR31786.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|165921741|gb|EDR38938.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|165991883|gb|EDR44184.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166207860|gb|EDR52340.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|166962057|gb|EDR58078.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049114|gb|EDR60522.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056546|gb|EDR66315.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750957|gb|ACA68475.1| two component heavy metal response transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|229680818|gb|EEO76913.1| transcriptional activator [Yersinia pestis Nepal516] gi|229689093|gb|EEO81158.1| transcriptional activator [Yersinia pestis biovar Orientalis str. India 195] gi|229693747|gb|EEO83796.1| transcriptional activator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229702183|gb|EEO90202.1| transcriptional activator [Yersinia pestis Pestoides A] gi|262361952|gb|ACY58673.1| transcriptional activator [Yersinia pestis D106004] gi|262365909|gb|ACY62466.1| transcriptional activator [Yersinia pestis D182038] gi|270339399|gb|EFA50176.1| transcriptional activator protein Irlr [Yersinia pestis KIM D27] gi|294354386|gb|ADE64727.1| transcriptional activator [Yersinia pestis Z176003] gi|320015323|gb|ADV98894.1| transcriptional activator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 230 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 134/231 (58%), Gaps = 4/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + I L F V V G DG+ L Y++D I+LD+ L + G+ Sbjct: 1 MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL LR +K TPV +LS S++++V+GL+ GADDY+ KPF+ ELVARI+A++RR Sbjct: 61 SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S G S + DL ++L A+ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 SDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +D + + +++V I +LR K+ K + TV G GYVL +T Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKIDTPYPVK-LLHTVRGMGYVLETRPDRQT 229 >gi|92112763|ref|YP_572691.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795853|gb|ABE57992.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 223 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M++LL+EDD ALA ++ E +++ + + GE L + +DA+ILDLGL D G Sbjct: 1 MKVLLVEDDTALAQALGEAFVEAGLLWEHAAN-GEAADYLVRVEAYDAVILDLGLPDGDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 L A R I PV +L+ DK G +GADDY++KPF E++ R+RA+VRRS Sbjct: 60 TRWLAAWREDGIDLPVLVLTARERWSDKAAGFSAGADDYVTKPFETAEVLFRLRALVRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GHA ++ G+L+++ +V + G I LT +E +++ L +T+ H+Y Sbjct: 120 HGHAHPILKLGELALDTHTGSVTLAGRPITLTAQESRLLAYLLHAAPRIVTRTELSEHVY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D EP+ +IDV I +LR+KL N IET+ G+GY L Sbjct: 180 DRDHEPDSNVIDVQISRLRRKLGN-----QRIETLRGQGYRL 216 >gi|300856229|ref|YP_003781213.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436344|gb|ADK16111.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 123/203 (60%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+K L++++ +LK N++V G D ++ + +D IILD+ + + G Sbjct: 1 MRILLAEDEKELSNALAAILKHNNYSVDAVYDGADALKCGLYKSYDVIILDIMMPKMNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L LR I TP+ +L+ + IED++ GL +GADDY+SKPF EL+AR+ A+ RR Sbjct: 61 EALGNLRKEGIHTPILMLTAKAEIEDRILGLNTGADDYLSKPFAMGELLARVHAMTRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A SL+ G++S+N + + + + L KE+QM+E+L ++ E F+ ++ Sbjct: 121 EFAPSLLKVGNISLNKENYELSSKKSSLRLGNKEFQMLEMLMNNPKCLISTEHFMERIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203 +E E+ ++ V+I LRKKLS+ Sbjct: 181 YDEEAEINVVLVYISYLRKKLSS 203 >gi|167585029|ref|ZP_02377417.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E+F V GE + K +DA++LD+ L I G Sbjct: 1 MKLLLVEDNAELAHWIVNLLRGEDFAVDSVGDGERADAVLKTERYDAVLLDMRLPGISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 EVLGRLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +V GDL + + L +E+ ++E L L++N T++K ++ ++ Sbjct: 121 GVGATRLVCGDLVYAFGTREFRCHDAPLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DEP ID++I +LRK L+ + I T+ G GY+LR Sbjct: 181 LDDEPSADAIDIYIHRLRKHLALSTA---EIITLRGLGYILR 219 >gi|330811570|ref|YP_004356032.1| two-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379678|gb|AEA71028.1| putative two-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 227 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 133/227 (58%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L ++ I+LD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLHRGLSEQGYTVDVAPDGIEGLHLALETDYAVIVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ +ED+++GL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQVSIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +++V I +LR KL + + + T+ G GYVL + D Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFEQKLLHTIRGMGYVLESRSDD 225 >gi|325068515|ref|ZP_08127188.1| winged helix family two component transcriptional regulator [Actinomyces oris K20] Length = 219 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + LK+ F + T G + L +FD IILD+GL DI GFE Sbjct: 3 RILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGRQAVALAVQEDFDLIILDVGLPDIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR + PV +L+ SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR +R Sbjct: 63 VLQQLRGQGVGAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDAT 122 Query: 122 HAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +T D+ ++L A+T+ ++G + L+ +E+ + E L++E L+ ++ Sbjct: 123 APDQMRLTHRDMVLDLRARTLMLEGRTVELSAREFALAETFMRHPGQVLSREQLLSSVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +++V++ LR KL G+ +ETV G GY L Sbjct: 183 LDFDPGSNVVEVYVSYLRNKL-----GRQRVETVRGMGYRL 218 >gi|330889138|gb|EGH21799.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. mori str. 301020] Length = 220 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 129/228 (56%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+LL+EDD+A+ I + L +E Y D EDG+ + L L +P Sbjct: 1 MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF++LR LR +++ PV IL+ D++ GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G AQ L+ +S++ ++ V QG + +T EYQ++ L +R +T+E + Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSHT 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LY +D+ E ++V I LRKKLS I TV G GY+L A Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLELKA 220 >gi|261211760|ref|ZP_05926047.1| two-component system response regulator QseB [Vibrio sp. RC341] gi|262404056|ref|ZP_06080611.1| two-component system response regulator QseB [Vibrio sp. RC586] gi|260839110|gb|EEX65742.1| two-component system response regulator QseB [Vibrio sp. RC341] gi|262349088|gb|EEY98226.1| two-component system response regulator QseB [Vibrio sp. RC586] Length = 219 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L + I L + + +V +L +DGI+ E+D I+LDLGL + Sbjct: 1 MKILVVEDDVQLGNQI---LSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ V +G I LT EY++I +++ + H Sbjct: 118 RASGNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + I+VFI +LRKK++ + I+TV G GY L Sbjct: 178 IYKQDFDRDSNTIEVFIGRLRKKIA-----PDVIKTVRGLGYQL 216 >gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264] gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 223 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223 >gi|170735656|ref|YP_001776916.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169817844|gb|ACA92426.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 127/227 (55%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G LS + ++ + G + LT +E ++E+L LR + K+ ++ Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKDTLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + I++++ +LRKKL N I T+ G GY+L A++ Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKAEE 224 >gi|306819943|ref|ZP_07453594.1| DNA-binding response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551979|gb|EFM39919.1| DNA-binding response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 75/202 (37%), Positives = 122/202 (60%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ L++++ +L N++V GED + + +DA+ILD+ + I G Sbjct: 1 MRILLVEDERELSNALVAILTRSNYSVDPVYDGEDALYYLETENYDAVILDIMIPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R PV +L+ S I+D+V GL SGADDY++KPF +EL+AR+RA+ RR Sbjct: 61 EVLKTIRKEGNKIPVIMLTAKSEIDDRVVGLDSGADDYLTKPFASKELLARLRALTRRGE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++++ G++S+N + + L KEYQMIE+L + +N + E F+ ++ Sbjct: 121 QLTENIVKVGNISLNRSSFELFSDSGSFRLANKEYQMIEMLMVNQNQLIPTEKFMERIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLS 202 E E+ ++ V I LRKKL Sbjct: 181 YDSEAEINVVWVHISFLRKKLQ 202 >gi|170725025|ref|YP_001759051.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810372|gb|ACA84956.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L +E LK + VTD + L K +D +ILD+GL D G Sbjct: 1 MKLLLVEDNALLVEELEKQLKQAGYVTDVTDKASEADYLLKETNYDCVILDIGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R I TPV +L+ S +KV G +GADDY+ KPF+ +EL+ RI A+++R+ Sbjct: 61 ELLSRWRNQGIHTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLVRINALIQRAH 120 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A S + ++++ D ++V VQ + LT E++++++ + L+K + Sbjct: 121 GKANSPSKELSYAGITLDEDQQSVMVQEEKFELTAMEFRLLKIFIMSPKKLLSKAQLTDK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKL-----GKTSIETRRGQGYIF 219 >gi|261366093|ref|ZP_05978976.1| transcriptional activator protein Irlr [Subdoligranulum variabile DSM 15176] gi|282572094|gb|EFB77629.1| transcriptional activator protein Irlr [Subdoligranulum variabile DSM 15176] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED + + LK+ ++V G D ++ E+DA+ILD+ L + G Sbjct: 1 MRILVVEDQPEMNALLVKQLKAAQYSVDSCLTGTDALDYLAGGEYDAVILDIMLPGVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR R A TPV +L+ I+D+VRGL SGADDY+ KPF +EL+AR+R ++RR Sbjct: 61 EVLRRRRAAGDKTPVLLLTARDGIDDRVRGLDSGADDYLVKPFALQELLARLRVLIRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL V+ A+T G I L+ KE+ ++E L+ L++E +++ Sbjct: 121 DQVSDVITVADLQVDCIARTASRGGQGIALSAKEFAVLEYLARNAGVVLSRERISQGVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++DV+I LRKK+ K I TV GYVLRE Sbjct: 181 YDYEGGSNVVDVYIRYLRKKIDEGRQPK-LIHTVRSVGYVLRE 222 >gi|254489992|ref|ZP_05103187.1| response regulator receiver domain protein [Methylophaga thiooxidans DMS010] gi|224465077|gb|EEF81331.1| response regulator receiver domain protein [Methylophaga thiooxydans DMS010] Length = 227 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ L IE LK +N V GE+G+ + Y +D I+DLGL + G Sbjct: 1 MRVLVIEDEVHLREQIEQQLKQQNLTVDAVSDGEEGLFMGSEYPYDVAIIDLGLPKLSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++ LR + P+ IL+ +DKV GL+SGADDY+ KPF+ EEL+AR+ A+ RR+ Sbjct: 61 DVIQQLRQQGVDYPILILTARGRWQDKVEGLESGADDYLVKPFHFEELLARLNALSRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + G + +N + V I LT EY+++ L L ++K +H+Y+ Sbjct: 121 GWANPTLCCGPICLNPSTQQVTKHDQVIDLTAYEYRLLHYLLLHAGEVISKTELTDHIYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+VF+ +LR KL + N IET+ GRGY L Sbjct: 181 QDQDRDSNVIEVFVKRLRGKL-DPDKALNPIETLRGRGYRL 220 >gi|148825749|ref|YP_001290502.1| transcriptional regulatory protein [Haemophilus influenzae PittEE] gi|148715909|gb|ABQ98119.1| transcriptional regulatory protein [Haemophilus influenzae PittEE] Length = 221 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + + +++ L F V + TD G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTD-GKTGMAALTSAPYDAVVLDLTLPKLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 60 LEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFTLAEVAARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ S+I + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 120 YGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL GK +I TV G GY L Sbjct: 180 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216 >gi|294501737|ref|YP_003565437.1| two-component response regulator [Bacillus megaterium QM B1551] gi|295707087|ref|YP_003600162.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294351674|gb|ADE72003.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294804746|gb|ADF41812.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 241 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 137/230 (59%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ +A +++ L+ E++ V V G+ G+E ++D I+LD+ L + G E Sbjct: 4 KILIVEDEAQIAKVLKIELEFEDYEVDVEYDGKAGLETATSAQYDLILLDVMLPSLSGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120 VLR LR A++ TPV +L+ ++ DKV GL GA+DY++KPF EEL+AR+R+ +R RS Sbjct: 64 VLRRLRKAEVFTPVILLTARNTTLDKVMGLDQGANDYVTKPFEIEELLARVRSCIRYRSL 123 Query: 121 GHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A L+ DL++NL+ + V I LT KEY ++ L KN +T+E Sbjct: 124 VEASGTKEAEAELLTISDLTINLETREVLRNNESITLTPKEYDLVVYLLTNKNKIVTREG 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L +++ E E +IDV+I LRKK+ + + I TV G GY+++E Sbjct: 184 ILTNVWGYEYEGETNVIDVYIRHLRKKV-DEGFSTSLIHTVRGVGYMMKE 232 >gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K ++V G I LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTQQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 223 >gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 226 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 125/226 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD ++A +IE L +++ V V G++ EL +E+D I+LD+ L I G Sbjct: 1 MKILLVEDDVSIAEAIEEDLSDQHYLVEVAYDGQEAWELVDVFEYDLILLDVMLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R R TP+ +++ ++ D+V GL +GADDY+ KPF +EL AR+RA++RR Sbjct: 61 SLCRKFRSRGCQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G++ ++ + V Q I L+ KEY+++E + ++ L HL+ Sbjct: 121 PSLPPVLEWGNIRLDPSSCRVYYQHEEIPLSPKEYKLLEFFLRHERRVFSRSQLLEHLWP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 PE + I LR+KL + IETV+G GY L+E + Sbjct: 181 FERLPEEATVKAHIRSLRQKLEACGAPSDVIETVYGLGYRLKEKPE 226 >gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 237 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F+V G + K + D ++LD+ L D+ GFE Sbjct: 13 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGFE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR TPV L+ + +DK+RGL G DDY++KPF+ EEL ARIRA++RR+ Sbjct: 73 VIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTAT 132 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A S + DL ++ + V G R+ L+ E++++ L L N L+K L+H++ Sbjct: 133 GEQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++ +I LR+K+ N I T+ G GYVLR+ A Sbjct: 193 NYDFRGDDNIVESYISYLRRKVDNTQ--PRLIHTLRGVGYVLRKPA 236 >gi|309972896|gb|ADO96097.1| Probable two-component regulator,transcriptional regulatory component QseB [Haemophilus influenzae R2846] Length = 221 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + + +++ L F V + TD G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTD-GKTGMAALTSAPYDAVVLDLTLPKLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 60 LDVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GH S+I + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 120 YGHHHSVIEQSGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKLS 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL GK +I TV G GY L Sbjct: 180 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216 >gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126] gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126] gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 131/227 (57%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+K LA + L L+ E ++V D G +G+E+ +FD I+LDL L ++ GFE Sbjct: 4 RILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K T + +++ SI D V GL GADDYI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQQEK-DTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ DL +++ +TV I LT +E+ ++ L N +T+E L Sbjct: 123 EAAKNAPAKASTYRDLKLDVQNRTVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 QVWKYDDAIETNVVDVYIRYLRGKI-DVPGKESYIQTVRGMGYVIRE 228 >gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185] gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550] gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W] gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550] gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185] gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 228 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 228 >gi|294508522|ref|YP_003572581.1| response regulator DrrA [Salinibacter ruber M8] gi|294344851|emb|CBH25629.1| response regulator DrrA [Salinibacter ruber M8] Length = 246 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 131/236 (55%), Gaps = 4/236 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGFE 61 +L++EDD L+ S+ L L+SE + V + ++GE +E + +D I+LD L D+ GFE Sbjct: 11 LLVVEDDSELSTSLLLYLESEGYEVTLAEMGETALEEATRLPGYDLIVLDAKLPDLSGFE 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR R + TPV +L+G+ E K+RG Q GADDY++KPF EELVARI ++RR Sbjct: 71 VLRQSRDDGVRTPVLMLTGLGDHEHKMRGFQVGADDYLTKPFETEELVARIDVLLRREAE 130 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G L V+L+ V G + LT EY+++ L R+ T T+E L ++ Sbjct: 131 ATDETGTFRVGGLRVDLEEDDVSRDGEPVDLTDLEYKLLAYLLRRRGRTATREQILRDVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 D E E + ID + LR + A + I++V+G GY L E A+ T ET Sbjct: 191 DLPTEVETRTIDRHVNALRDVMDGEAEDEWPIQSVYGIGYKL-EGAERTTGSEQET 245 >gi|300774744|ref|ZP_07084607.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300506559|gb|EFK37694.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 230 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 131/221 (59%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ LA S++ L+ EN+ + + +E F +D I+LD+ L D G Sbjct: 1 MKILIIEDNHELAQSMKYYLEGENYICECSHHYNEALEKLSFNSYDCILLDIMLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ++ KIS+ + I+S ++++DK+ GL+ GADDYI+KPF+ EL AR+RA+ RR + Sbjct: 61 NILNYIKTEKISSGILIISAKNALDDKINGLERGADDYITKPFHLPELHARLRAVYRRKK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 S + ++ +N D V + R+ +T KE++++ + KN L+K+ NHL+ Sbjct: 121 MEGYSEVKFNEIILNTDTYEVIINETRLEVTQKEFELLLYFLVNKNRVLSKQSIANHLWG 180 Query: 180 DGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D D + + LRKK+ AA GK+YIET++G GY Sbjct: 181 DYTDNLSNFDFVYQHVKNLRKKIG-AAQGKDYIETIYGLGY 220 >gi|153010837|ref|YP_001372051.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562725|gb|ABS16222.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 222 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ LA+ + L+ N++V D + F E+D ++LDLGL D G Sbjct: 1 MRILLVEDNLTLANWLAKSLQQSNYSVDTVHDAADAEQALAFTEYDLVVLDLGLPDKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R PV IL+ +S++ ++RGL +GADDY++KPF EL ARIRA +RRS Sbjct: 61 DVLEHIRGRGNEVPVIILTANASLDGRIRGLDAGADDYLAKPFELSELEARIRAHLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L + + + + + L KE+ ++E L R TT++K + +YD Sbjct: 121 QRTAPVVTCGLLRFDTNTRLFSLGDDPLSLAPKEHAVLEQLLRRIGTTVSKTTLVQGIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + I+++I +LRKKL G K I T+ G GY+LRE Sbjct: 181 FDSETDENAIEIYIHRLRKKLE---GSKAEIVTLRGLGYLLRE 220 >gi|167579287|ref|ZP_02372161.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] Length = 225 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E F V GE + K +DA++LD+ L + G Sbjct: 1 MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GDL + + G + L +E+ ++E L L++ T++K ++ +Y Sbjct: 121 GVGATQLACGDLVYLFATREFQCGGVLLALRRREHAILETLMLQQGKTVSKARLMDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DEP ID++I +LRK LS G I T+ G GY+LR Sbjct: 181 LDDEPSADAIDIYIHRLRKHLS---GSLAQIITLRGLGYILR 219 >gi|50085344|ref|YP_046854.1| putative two-component response regulator [Acinetobacter sp. ADP1] gi|49531320|emb|CAG69032.1| putative two-component response regulator [Acinetobacter sp. ADP1] Length = 218 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 129/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD + A SI+ L+ + + V D G+ I K +++D I+LD GL G Sbjct: 1 MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + TPV +++ SI D+V GL GA+DY+ KPF+ EEL ARIR+ +R + Sbjct: 61 QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SL+ ++ +N K V++ G + LT KE++++ + +T+E + LY Sbjct: 121 QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE E I+VFI +LRKK+ G NYI+T+ G GY + E Sbjct: 181 WGDEIESNAIEVFIYQLRKKI-----GTNYIKTIRGLGYRMSE 218 >gi|302187207|ref|ZP_07263880.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] gi|330974381|gb|EGH74447.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 225 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L L + KE + LY Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL ++ K IETV G GY+ E Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSSVAFKP-IETVRGMGYLFNE 222 >gi|66046938|ref|YP_236779.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257645|gb|AAY38741.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330897073|gb|EGH28553.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330941394|gb|EGH44220.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 225 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L L + KE + LY Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL ++ K IETV G GY+ E Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSSVAFKP-IETVRGMGYLFNE 222 >gi|238793011|ref|ZP_04636640.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia ATCC 29909] gi|238727611|gb|EEQ19136.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia ATCC 29909] Length = 220 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ L I + L ++ + + L ++ +ILDLGL D G Sbjct: 1 MKLLIVEDDELLQRGIAMALTNQGYACDCAGTAAEAHSLLHTSQYSMVILDLGLPDQDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R ++ PV IL+ ++ED+V GL +GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 VLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L+ DLS+NL + V +Q + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQDQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LR+KL GK+ I TV G GY L Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRL 216 >gi|70731371|ref|YP_261112.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68345670|gb|AAY93276.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 222 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED +LA + L + + V G D + +D IILDLGL +PG Sbjct: 1 MRLLVVEDHVSLADELLEGLNRQGYAVDWLADGRDALYQGASEPYDLIILDLGLPGVPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR R ++TPV +L+ S +++ GL++GADDY+SKPF+ EEL R++A++RRS Sbjct: 61 EVLRKWRADGLATPVLVLTARGSWAERIEGLKAGADDYLSKPFHPEELHLRVQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + L ++ + V G + LT E++++ L L+K HLY Sbjct: 121 GQANQQTLQAAGLHLDEGRQCVVRDGQDVLLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DG E + +++V + LR+KL G++ IET G+GY+ Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYLF 217 >gi|229588502|ref|YP_002870621.1| tw-component system, response regulator [Pseudomonas fluorescens SBW25] gi|229360368|emb|CAY47225.1| tw-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 230 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L ++ I+LD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLHRGLTEQGYTVDVAREGVEGLHLALENDYAVIVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ +ED++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTARERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPFEQK-LLHTIRGMGYVL 219 >gi|172038472|ref|YP_001804973.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171699926|gb|ACB52907.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 609 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD+ + + +L+S +F V V G++G+E +++D IILDL L I G Sbjct: 1 MKILLIEDDQLTSEYLAAVLESHHFIVDVVFNGQEGLEYANLWDYDVIILDLQLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR+ K TP+ IL+ + GL +GADDY+ KP + +L+ARIRA+ RR Sbjct: 61 SLCRQLRMKKKQTPILILTACQETDKISIGLDAGADDYVLKPCDPPQLIARIRALTRRGY 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S ++T G LS+NL + V Q ++L +EY ++EL ++ + ++HL+ Sbjct: 121 NISSSSVLTWGLLSLNLVSAQVTYQKQEVNLRNQEYHLLELFLRHPQRIFSRSLIIDHLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + D P + + LR KL A ++ ET++G GY L D Sbjct: 181 EVGDVPSESAVTNLVKDLRNKLKAAGMEEDIFETIYGLGYRLNPVPTD 228 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 14/124 (11%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF------DAIILDLGLTD 56 I++++DD + +I +L F + T L + + +F++ D +ILDL + Sbjct: 492 IMIMDDDSTIVTAIRNILHPWGFQI--TGLSQ----VNQFWKILTQTNPDLLILDLEMPT 545 Query: 57 IPGFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G E+ R +R K P+ I++ + + + ++GA+D++ KP ELVAR+ Sbjct: 546 INGIELCRVVRQDKQYAKLPIIIVTAHTETKYLQQSFEAGANDFLGKPIIPSELVARVFN 605 Query: 115 IVRR 118 +++ Sbjct: 606 QIKK 609 >gi|17989359|ref|NP_541992.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|62317173|ref|YP_223026.1| two component response regulator [Brucella abortus bv. 1 str. 9-941] gi|83269154|ref|YP_418445.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148557916|ref|YP_001257276.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|189022433|ref|YP_001932174.1| Response regulator receiver [Brucella abortus S19] gi|225686080|ref|YP_002734052.1| DNA-binding response regulator [Brucella melitensis ATCC 23457] gi|237816732|ref|ZP_04595724.1| two component response regulator [Brucella abortus str. 2308 A] gi|254691342|ref|ZP_05154596.1| DNA-binding response regulator [Brucella abortus bv. 6 str. 870] gi|254698453|ref|ZP_05160281.1| DNA-binding response regulator [Brucella abortus bv. 2 str. 86/8/59] gi|254699520|ref|ZP_05161348.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513] gi|254706226|ref|ZP_05168054.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10] gi|254711480|ref|ZP_05173291.1| DNA-binding response regulator [Brucella pinnipedialis B2/94] gi|254731901|ref|ZP_05190479.1| DNA-binding response regulator [Brucella abortus bv. 4 str. 292] gi|256015015|ref|YP_003105024.1| two component response regulator [Brucella microti CCM 4915] gi|256029890|ref|ZP_05443504.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1] gi|256043150|ref|ZP_05446091.1| DNA-binding response regulator [Brucella melitensis bv. 1 str. Rev.1] gi|256111861|ref|ZP_05452826.1| DNA-binding response regulator [Brucella melitensis bv. 3 str. Ether] gi|256256527|ref|ZP_05462063.1| DNA-binding response regulator [Brucella abortus bv. 9 str. C68] gi|256262794|ref|ZP_05465326.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|260544408|ref|ZP_05820229.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260564371|ref|ZP_05834856.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260756952|ref|ZP_05869300.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759674|ref|ZP_05872022.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762916|ref|ZP_05875248.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882765|ref|ZP_05894379.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261313668|ref|ZP_05952865.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261319091|ref|ZP_05958288.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261749975|ref|ZP_05993684.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|265986906|ref|ZP_06099463.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265989580|ref|ZP_06102137.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993318|ref|ZP_06105875.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|294853244|ref|ZP_06793916.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297249884|ref|ZP_06933585.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306840921|ref|ZP_07473664.1| DNA-binding response regulator [Brucella sp. BO2] gi|17985230|gb|AAL54256.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|62197366|gb|AAX75665.1| two component response regulator [Brucella abortus bv. 1 str. 9-941] gi|82939428|emb|CAJ12388.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|148369201|gb|ABQ62073.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|189021007|gb|ACD73728.1| Response regulator receiver [Brucella abortus S19] gi|225642185|gb|ACO02098.1| DNA-binding response regulator [Brucella melitensis ATCC 23457] gi|237787545|gb|EEP61761.1| two component response regulator [Brucella abortus str. 2308 A] gi|255997675|gb|ACU49362.1| two component response regulator [Brucella microti CCM 4915] gi|260097679|gb|EEW81553.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260152014|gb|EEW87107.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260669992|gb|EEX56932.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673337|gb|EEX60158.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260677060|gb|EEX63881.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872293|gb|EEX79362.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261298314|gb|EEY01811.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261302694|gb|EEY06191.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261739728|gb|EEY27654.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262764188|gb|EEZ10220.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263000249|gb|EEZ12939.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092602|gb|EEZ16837.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|264659103|gb|EEZ29364.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|294818899|gb|EFG35899.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297173753|gb|EFH33117.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306289073|gb|EFM60333.1| DNA-binding response regulator [Brucella sp. BO2] gi|326410408|gb|ADZ67472.1| Response regulator receiver [Brucella melitensis M28] gi|326553701|gb|ADZ88340.1| Response regulator receiver [Brucella melitensis M5-90] Length = 225 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57 MRI+LIEDD L ++ + +E V +V+ D D +E ++ D ++LDL L D Sbjct: 1 MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARY---DLVLLDLMLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G LR LR STPV IL+ + I D+++GL +GADDY++KPF+ EL AR+ A+ R Sbjct: 58 QGLSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G+ LI G L ++L AK+V G + LT +E+ ++E TL+K H Sbjct: 118 RYSGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY E E ++V + +LRKKL +A IETV G GY L Sbjct: 178 LYSFDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216 >gi|169795326|ref|YP_001713119.1| putative two-component response regulator [Acinetobacter baumannii AYE] gi|213158688|ref|YP_002319986.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|215482859|ref|YP_002325062.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB307-0294] gi|260554438|ref|ZP_05826659.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|301346782|ref|ZP_07227523.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB056] gi|301510388|ref|ZP_07235625.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB058] gi|301595944|ref|ZP_07240952.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB059] gi|332850436|ref|ZP_08432756.1| putative transcriptional regulatory protein QseB [Acinetobacter baumannii 6013150] gi|332871886|ref|ZP_08440298.1| putative transcriptional regulatory protein QseB [Acinetobacter baumannii 6013113] gi|169148253|emb|CAM86118.1| putative two-component response regulator [Acinetobacter baumannii AYE] gi|213057848|gb|ACJ42750.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|213988252|gb|ACJ58551.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB307-0294] gi|260410980|gb|EEX04277.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|332730707|gb|EGJ62018.1| putative transcriptional regulatory protein QseB [Acinetobacter baumannii 6013150] gi|332731100|gb|EGJ62401.1| putative transcriptional regulatory protein QseB [Acinetobacter baumannii 6013113] Length = 220 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD++ A SI+ L+ + + V + G+ + + +++D I+LD GL + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + + PV ++ SI D+V GL GA+DY+ KPF+ EEL ARIRA +R+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS++ GDL ++ AK V G I LT KE+Q++ L + +T++ LY Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E I+VFI +LRKK+ G + I+T+ G GY Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214 >gi|193077836|gb|ABO12711.2| putative two-component response regulator [Acinetobacter baumannii ATCC 17978] Length = 220 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD++ A SI+ L+ + + V + G+ + + +++D I+LD GL + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLTGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + + PV ++ SI D+V GL GA+DY+ KPF+ EEL ARIRA +R+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS++ GDL ++ AK V G I LT KE+Q++ L + +T++ LY Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E I+VFI +LRKK+ G + I+T+ G GY Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214 >gi|229173313|ref|ZP_04300857.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus MM3] gi|228610007|gb|EEK67285.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus MM3] Length = 224 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 132/224 (58%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+++LA +EL LK E + V + G G+E +D I+LDL L + G EV Sbjct: 4 ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLETALEINYDLILLDLMLPGLNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R LR K +TP+ +L+ SI D+V GL SGADDY+ KPF EEL+AR+R I RR Sbjct: 64 CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEHI 122 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H SL DL + ++++T+ I LT KE++++ + N LT+++ L+ + Sbjct: 123 ENKHVSSLTFK-DLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E I+DV++ LR KL ++ + YI+TV G GY+++ Sbjct: 182 WGYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224 >gi|156974939|ref|YP_001445846.1| hypothetical protein VIBHAR_02658 [Vibrio harveyi ATCC BAA-1116] gi|269963434|ref|ZP_06177761.1| DNA-binding response regulator [Vibrio harveyi 1DA3] gi|156526533|gb|ABU71619.1| hypothetical protein VIBHAR_02658 [Vibrio harveyi ATCC BAA-1116] gi|269831834|gb|EEZ85966.1| DNA-binding response regulator [Vibrio harveyi 1DA3] Length = 219 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I L++ N +V +L +DGI+ E+DAI+LDLGL + Sbjct: 1 MKILVVEDEPRLGEQI---LETLENNGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL AR+RA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ + V QG + LT EY+++ +++ + H Sbjct: 118 RASGNASPVMQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + I+VFI ++RKK++ I+TV G GY L Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216 >gi|116691688|ref|YP_837221.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116649688|gb|ABK10328.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 221 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 124/219 (56%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L + FD ++LD L + GF Sbjct: 1 MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G L ++ ++ E+ + L+ +E+ ++E+L+ R +KE LN L+ Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDSQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ ++ ++RKKL G I T G GY Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQ---GSSVEIRTARGMGY 216 >gi|326408629|gb|ADZ65694.1| Transcriptional regulatory protein PHOP [Brucella melitensis M28] gi|326538351|gb|ADZ86566.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis M5-90] Length = 229 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G L +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++ R+RA++RR+ Sbjct: 61 SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLTRLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ G + IETV G GY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRMRSGGEGEA 224 >gi|325122844|gb|ADY82367.1| two component transcriptional regulator, winged helix family [Acinetobacter calcoaceticus PHEA-2] Length = 220 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD++ A SI+ L+ + + V + G+ + + +++D I+LD GL + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + + PV ++ SI D+V GL GA+DY+ KPF+ EEL ARIRA +R+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS++ GDL ++ AK V G I LT KE+Q++ L + +T++ LY Sbjct: 121 LSQQSVLTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E I+VFI +LRKK+ G + I+T+ G GY Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214 >gi|325289148|ref|YP_004265329.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964549|gb|ADY55328.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 228 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 140/231 (60%), Gaps = 13/231 (5%) Query: 1 MRILLIEDDKALAHSI-----ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55 MR+L+IEDD L+ +I L + + F+ GE+G+ L + +D I+LD+ + Sbjct: 1 MRVLVIEDDPVLSATICRSLGGLFVYEQAFD------GEEGLYLAEQEIYDVIVLDIMMP 54 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G++VL ALR +STPV +L+ +I+DKV+G + GADDY+ KPF ++EL+AR+ ++ Sbjct: 55 KMNGYQVLSALREKGVSTPVLLLTAKDNIDDKVKGFKLGADDYLVKPFYRQELLARLESL 114 Query: 116 VRRSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +RRS G + I+ DL++NL +TV+++ + L G+++ ++E L N+ +TK+ Sbjct: 115 IRRSGGALKENILNFRDLTLNLSNRTVKIRDEELTLAGRQFDILEFLIRNHNSIVTKKQI 174 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ + + ++DV+ +RK L G Y++TV G GY++ N Sbjct: 175 FDRIWGFDSDTTITVVDVYTSNIRKALQK-KGYDKYLKTVRGVGYMITGNG 224 >gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39] gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39] Length = 232 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 130/233 (55%), Gaps = 3/233 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED+ L I L + V G G+E+ ++FD IILD+ L+ + G Sbjct: 1 MKILLIEDEPGLVSVIIRGLTEVGMQISVAGDGLVGLEMAMKHDFDLIILDIMLSGMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R + PV +L+ +SS E+ + GL SGADDY+ KPF EL ARIR++VRRS+ Sbjct: 61 QVCREIRKGNNNVPVLMLTALSSTENIITGLDSGADDYLVKPFKFAELEARIRSLVRRSK 120 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S L V+ AKTV G I+LT EY+++E +N L++ L ++ Sbjct: 121 VVSSPRSTQSISGLEVDTLAKTVSRDGKTINLTATEYRLLEYFIQNQNVVLSRIQILENV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 +D ++DV+I LRKK+ N K I TV+G GY+ + A +E + Sbjct: 181 WDIDFNMGTNVVDVYINYLRKKIDNGYQTK-LIHTVFGMGYIFKSQAPNEDTD 232 >gi|284993057|ref|YP_003411611.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066302|gb|ADB77240.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 220 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 122/220 (55%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ ED+ +A +E L++ F V G +FD +ILD+GL + GFE Sbjct: 3 RVLIAEDEARIAAFVEKGLRANGFATAVVADGRTARAAAASGDFDLMILDIGLPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLRALR +++ PV IL+ S++D V L+ GADDY+ KPF EEL+AR+R + R Sbjct: 63 VLRALRADRVTIPVVILTARDSVQDTVAALEGGADDYMPKPFRFEELLARVRLRLSGGRQ 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ GDLS++L + + + L+ +E+ + E L +E L+H++ Sbjct: 123 TETTVLTCGDLSLDLRTRRAQAGSRTVALSAREFALAETFLRHPGQVLAREQLLSHVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ LR+KL G + IETV G GY L Sbjct: 183 DFDPGSNVVDVYVRYLRRKL-----GADRIETVRGMGYRL 217 >gi|293609579|ref|ZP_06691881.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828031|gb|EFF86394.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 220 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD++ A SI+ L+ + + V + G+ + + +++D I+LD GL + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + + PV ++ SI D+V GL GA+DY+ KPF+ EEL ARIRA +R+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS++ GDL ++ AK V G I LT KE+Q++ L + +T++ LY Sbjct: 121 LSQQSVLTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E I+VFI +LRKK+ G + I+T+ G GY Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214 >gi|171318586|ref|ZP_02907735.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171096240|gb|EDT41149.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 224 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G LS + + + G + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSRVECGPLSYDSIDRGFHLAGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I++++ +LRKKL N I T+ G GY+L A Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKA 222 >gi|28869098|ref|NP_791717.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852338|gb|AAO55412.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 220 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 128/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+LL+EDD+A+ I + L +E Y D EDG+ + L L +P Sbjct: 1 MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF++LR LR +++ PV IL+ +++ GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGFDLLRQLRAEELALPVLILTARDGTANRIAGLDAGADDYLIKPFDVDELKARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G AQ L+ +S++ ++ V QG + +T EYQ++ L +R +T+E N Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNT 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY +D+ E ++V I LRKKLS I TV G GY+L Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216 >gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 1317 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 130/227 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ +A+++ L +N+ V + + G+ +L + YE+D I+LD+ L + G Sbjct: 1 MKILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + P+ +L+G S DK GL +GADDY+ KP ++EELVAR+RA++RR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++Q ++ L ++ + V Q ++ LT KEY ++ELL + M L+HL+ Sbjct: 121 VNSQPVLEWRGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D P + I LR KL A + +ETV+G GY L+ D Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQEND 227 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD ++++L + + E + + D +ILD+ + + G E Sbjct: 375 KILVVDDDLKTLELLQVLLTPWGLEIITLNHPGKFWETWEKIQPDMLILDIEMPTMSGIE 434 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R P+ L+ S++E + GADD++SKP EL RI + R Sbjct: 435 LCKMIRSHDQGREVPILFLTVHSNVEIVNQVFSVGADDFVSKPIIISELFNRILNRLERV 494 Query: 120 R 120 R Sbjct: 495 R 495 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 8/137 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DD +E +L + V G+ I D I+LDL + + G+E Sbjct: 1064 VLVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1123 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGAD------DYISKPFNKEELVARIRA 114 + L+ + P+ I S S ++ Q D++SKP + +L +R Sbjct: 1124 MAGLKKCSDTRDIPIVICSVYKSSQNNSNYQQDSNSEGVKFADWLSKPVEETDLFNSLRK 1183 Query: 115 IVRRSRGHAQSLIVTGD 131 +V + LI+ D Sbjct: 1184 VVFEPSRKLKILIIEDD 1200 >gi|170692767|ref|ZP_02883929.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170142423|gb|EDT10589.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 234 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L + + V V GE+G L +++D I+LD+ L GF Sbjct: 1 MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGTYLATEFDYDVIVLDVMLPKRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ALR+ K STPV +L+ + D+VRGL+ GADDY++KPF+ ELV R+ A+ RR+R Sbjct: 61 SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT KE+Q++ +L+ R+ L+K ++D Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++ I +LR KL K + TV G GYVL Sbjct: 180 VNFDSHTNVVETAIKRLRAKLDGPFPSK-LLHTVRGMGYVL 219 >gi|189346808|ref|YP_001943337.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] gi|189340955|gb|ACD90358.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] Length = 222 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ ++ ++ L+ E F V + G+ G+++ E+D +I+D + I G Sbjct: 1 MRILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMALLNEYDLMIVDWMIPGISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R A S P+ L+ ++ED V GL +GA+DYI KPF EEL+ARIR +RR+ Sbjct: 61 EVCRQVRKAGSSVPILFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I G ++VN V + I LT KE+ ++E L+ K+ T+ + H++D Sbjct: 121 PESDT-ITAGCVTVNPVTHQVFCRNTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +IDV+I LRKKL + G N I+T+ G GY++RE+ Sbjct: 180 MHFDSDTSVIDVYINFLRKKL-DIVGCGNIIQTIRGVGYIIRES 222 >gi|107026470|ref|YP_623981.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692342|ref|YP_837875.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|254248532|ref|ZP_04941852.1| DNA-binding response regulator [Burkholderia cenocepacia PC184] gi|105895844|gb|ABF79008.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116650342|gb|ABK10982.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|124875033|gb|EAY65023.1| DNA-binding response regulator [Burkholderia cenocepacia PC184] Length = 224 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G LS + ++ + G + LT +E ++E+L LR + K+ ++ Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKDTLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + I++++ +LRKKL N I T+ G GY+L A+ Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKAE 223 >gi|322388071|ref|ZP_08061677.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141092|gb|EFX36591.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 223 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 135/222 (60%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +STPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGVSTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GDL+VNL V+VQ + L GKE++++ +N L K + L+ Sbjct: 121 KFNENTLTYGDLTVNLSTNEVKVQDASVELLGKEFELLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ K+RKKL +A +N ++T+ GY+L+ Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGSAFAEN-LQTLRSVGYILK 221 >gi|312959066|ref|ZP_07773585.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311286836|gb|EFQ65398.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 225 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ A + L + + V V G +G+ L ++ I+LD+ L + GF Sbjct: 1 MRILIVEDEEKTADYLHRGLTEQGYTVDVAREGVEGLHLALENDYAVIVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ +ED++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTARERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPFEHK-LLHTIRGMGYVL 219 >gi|330830551|ref|YP_004393503.1| transcriptional regulatory protein PhoP [Aeromonas veronii B565] gi|328805687|gb|AEB50886.1| Transcriptional regulatory protein PhoP [Aeromonas veronii B565] Length = 229 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDDK L H + +L + VY TD + Y D I+DLGL D+ G Sbjct: 6 MKILLVEDDKLLNHHLSSLLTEADNQVYSTDQAGIALHYAADYPIDVAIIDLGLPDMDGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR +I P+ +L+ + +DKV GL++GADDY+ KPF K+EL+AR+ A+VRRS Sbjct: 66 QLIRQLRERQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSA 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 G + GD ++L K + + G LT EY ++E L ++K+ L+ LY Sbjct: 126 GFISPKVKAGDYELDLSRKELTIAGEVAVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DG +P I+V + +LRKKL + G I T+ +GY+ Sbjct: 186 DGEGDPNT--IEVMVSRLRKKL-DPEGTIQPISTIRRQGYIF 224 >gi|302060525|ref|ZP_07252066.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato K40] Length = 225 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L L + KE + LY Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGDQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL ++ K IETV G GY+ E Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSSVAFKP-IETVRGMGYLFNE 222 >gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 130/229 (56%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+K +A + L E F V V G GI + D +ILD+ L + GFE Sbjct: 9 RILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAARERPADLVILDIMLPGMDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V R LR A P+ +L+ ++ D+V GL+SGADDY+ KPF EEL+ARIRA++RR + Sbjct: 69 VCRRLR-AGSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRRHVA 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R ++ L +N ++ V + G + LT KEY+++EL LT+++ + ++ Sbjct: 128 RTEGPVVLQVNGLEMNTASREVTIAGRAVQLTAKEYELLELFMRHPGQVLTRDVIYDRVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E II+V++ LR+KL + G+ + TV G GY+LRE E Sbjct: 188 GYDFGGESNIIEVYVRYLRQKLEESGEGR-MLHTVRGAGYILREQPYGE 235 >gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ ++ L+ F G + ++ + + D IILD+ L + GFE Sbjct: 6 KILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEKPDLIILDVMLPKVDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R+LR A+ S P+ +L+ D+V GL+ GADDY++KPF+ ELVAR+RAI+RR Sbjct: 66 VCRSLR-ARGSMPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRAILRRVAE 124 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +I GDL +N + V V+G + LT KEYQ+++LL+ + ++E L L Sbjct: 125 KQQQNDGIITVGDLVINPASHLVTVRGKPVDLTLKEYQLLQLLAENRGRVFSREALLERL 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++G + + IDV I LR+K+ YI TV G GY R+ Sbjct: 185 WEGEYYGDTRTIDVHIRHLREKIEANPSNPRYIITVRGVGYKFRD 229 >gi|320323415|gb|EFW79503.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. glycinea str. B076] gi|320327611|gb|EFW83623.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. glycinea str. race 4] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I+ G L ++L+ K + + LT EY+++E L L + KE + LY Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL + K IETV G GY+ E Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 222 >gi|299133545|ref|ZP_07026739.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298591381|gb|EFI51582.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 6 LRLLVVEDDPDLNRQLTAALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL + R K PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 66 SVLESWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G + ++ V V G+ I +T EY+++ L +++ + HLYD Sbjct: 126 GHAQSELTCGPVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHLYD 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + I+VF+ ++RKKL + I+TV G GY+L D Sbjct: 186 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLLAPPTTD 227 >gi|148544452|ref|YP_001271822.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184153816|ref|YP_001842157.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|227363120|ref|ZP_03847255.1| response regulator [Lactobacillus reuteri MM2-3] gi|325682774|ref|ZP_08162290.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|148531486|gb|ABQ83485.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183225160|dbj|BAG25677.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|227071838|gb|EEI10126.1| response regulator [Lactobacillus reuteri MM2-3] gi|324977124|gb|EGC14075.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 228 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 137/227 (60%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ LA+ +EL LK E ++ V G G+E +FD I+LDL L ++ G E Sbjct: 3 RILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K TP+ I++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 VARRVREIK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ + DL++ + + V I+LT +EY+++ +L N ++++ L Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + E ++DV+I LR K+ + G K+YI+TV G GYV+R Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227 >gi|296161212|ref|ZP_06844021.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295888553|gb|EFG68362.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 212 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 130/214 (60%), Gaps = 2/214 (0%) Query: 12 LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71 +A ++ L ++ V + G+DG+ L FD I+LD+ L ++ GFEVLR LR K Sbjct: 1 MASYLQKGLTEASYTVDIAGNGKDGLFLALHENFDLIVLDVMLPELNGFEVLRRLRAQK- 59 Query: 72 STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD 131 TPV +L+ ++EDKV GL+ GADDY+SKPF E +ARIR+++RR+ + ++V + Sbjct: 60 HTPVLLLTARDTVEDKVEGLELGADDYLSKPFAYAEFLARIRSLLRRAPRGVRDVLVIAN 119 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 L V+L + V G RI LT +E+ +++LL+ R+ LT+ + ++D + + ++D Sbjct: 120 LEVDLIRRRVHRGGTRIDLTAQEFALLQLLAERQGEVLTRTFITSQIWDMNFDSDTNVVD 179 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 V + ++R K+ N+ K + TV G GYVL + + Sbjct: 180 VAVKRVRAKIDNSF-DKKLLHTVRGMGYVLEDRS 212 >gi|256059536|ref|ZP_05449736.1| DNA-binding response regulator [Brucella neotomae 5K33] gi|261323505|ref|ZP_05962702.1| transcriptional regulatory protein [Brucella neotomae 5K33] gi|261299485|gb|EEY02982.1| transcriptional regulatory protein [Brucella neotomae 5K33] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57 MRI+LIEDD L ++ + +E V +V+ D D +E ++ D ++LDL L D Sbjct: 1 MRIILIEDDPILGAAVRDHIATEGHCVDWVSRLDTAHDYMESVRY---DLVLLDLMLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G LR LR STPV IL+ + I D+++GL +GADDY++KPF+ EL AR+ A+ R Sbjct: 58 QGLSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G+ LI G L ++L AK+V G + LT +E+ ++E TL+K H Sbjct: 118 RYSGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY E E ++V + +LRKKL +A IETV G GY L Sbjct: 178 LYSFDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216 >gi|312885159|ref|ZP_07744839.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309367172|gb|EFP94744.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 219 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I +++ N +V +L +DGI+ E+DAI+LDLGL + Sbjct: 1 MKILVVEDEPRLGEQI---IEALEQNEWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL LR I+TPV ILS ++ ++ GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLNGLRDENINTPVIILSARDTLTQRIEGLNAGADDYLTKPFEMPELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ G+LS++ + V QG I LT EY+++ +++ + H Sbjct: 118 RASGNASPVMQIGNLSLDTRSSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + I+VF+ ++RKK++ I+TV G GY L Sbjct: 178 IYKQDFDRDSNTIEVFVGRIRKKIA-----PKVIKTVRGLGYQL 216 >gi|302188629|ref|ZP_07265302.1| two component transcriptional regulator [Pseudomonas syringae pv. syringae 642] Length = 220 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/228 (40%), Positives = 127/228 (55%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD AL I+ L E + V G + FD ILD+GL + GF Sbjct: 1 MRLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV IL+ + ED++ GL GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 EVLRRLRHSGSTLPVMILTARDATEDRIIGLDIGADDYLVKPFDVSELKARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMI-ELLSLRKNTTLTKEMFLNH 177 G A+ LI + LD T +V H + LT KEYQ++ ELLS +T+E + Sbjct: 121 GRAKVLIEHN--GIRLDPSTQQVSYHDAAVALTPKEYQLLYELLS-PPGRVMTRERLMQL 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LY +E E ++V I LRKK S+ I T+ G GY++ E + Sbjct: 178 LYGWNEEAESNTLEVHIHHLRKKFSS-----TLIRTIRGVGYLVEERS 220 >gi|293603882|ref|ZP_06686297.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292817719|gb|EFF76785.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 234 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 129/232 (55%), Gaps = 7/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLK--SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 MRIL+IEDD+ LA ++ L+ ++ + L DG+ ++ FD +ILD+GL + Sbjct: 1 MRILVIEDDEDLADALVRRLRRLGHAVDLQIDGLSADGV--LQYETFDLVILDIGLPRMS 58 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF++L LR TPV L+ IED+V L +GADDY++KPF+ EL AR RA++RR Sbjct: 59 GFDILHRLRDRGSKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLRR 118 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + GDL ++ A+ V + G RI L +EY ++E+L N ++K N L Sbjct: 119 PIAQATGVQRFGDLVIDSAARHVSLAGQRIDLPKREYSLLEILLAGMNRAVSKTEIANKL 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + DE I+V+I +LR+KL G IET G GY+L ++ Sbjct: 179 FAFDDEAAPNAIEVYIARLRRKLE---GSPLRIETQRGTGYLLTSTTPPDST 227 >gi|262278413|ref|ZP_06056198.1| two-component system response regulator protein [Acinetobacter calcoaceticus RUH2202] gi|262258764|gb|EEY77497.1| two-component system response regulator protein [Acinetobacter calcoaceticus RUH2202] Length = 220 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD++ A SI+ L+ + + V + G+ + + +++D I+LD GL + G Sbjct: 1 MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + + PV ++ SI D+V GL GA+DY+ KPF+ EEL ARIRA +R+ Sbjct: 61 KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS++ G+L ++ AK V G I LT KE+Q++ L + +T++ LY Sbjct: 121 LSQQSVLTWGNLQLDTQAKVVSCAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E I+VFI +LRKK+ G + I+T+ G GY Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214 >gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 135/225 (60%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + L E ++V V G G+E+ +D ++LDL L I GFE Sbjct: 3 RILIIEDETEIASYLRRGLSLEGYHVDVAFDGLQGLEMASTGNYDLVVLDLMLPVIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A + P+ +L+ ++ D+V GL++GADDY+ KPF EEL+ARIRA +RR + Sbjct: 63 VARRIRAAS-NVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRQQT 121 Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + Q ++ +L+++ ++ + V R+ LT KEY ++EL N LT+++ + +++ Sbjct: 122 YQHQEVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDVIYDRVWN 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E II+V++ LR+KL A G I TV GY+LRE+A Sbjct: 182 YDFGGESNIIEVYVRYLRQKLE-ANGEPRLIHTVRSVGYILREDA 225 >gi|330980166|gb|EGH78348.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L L + KE + LY Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL + K IETV G GY+ E Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDGSVAFKP-IETVRGMGYLFNE 222 >gi|237728485|ref|ZP_04558966.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2] gi|226909963|gb|EEH95881.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2] Length = 226 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 130/220 (59%), Gaps = 1/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ L E + + D G DG+ ++D IILD+ L + G++ Sbjct: 3 RILIVEDEHKTGSYLQQGLVEEGYQADLFDNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ALR + PV L+ ++ DKV+GL+ GADDY+ KPF+ ELVAR+R ++RR+R Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ D++V++ +TV G +IHLTGKEY ++ELL R L + + + +++ Sbjct: 123 QTATVCTIADMTVDMVRRTVTRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNI 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +IDV + +LR K+ + K I TV G GY+L Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDYEPK-LIHTVRGAGYIL 221 >gi|167584769|ref|ZP_02377157.1| two component heavy metal response transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 203 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/202 (39%), Positives = 123/202 (60%), Gaps = 2/202 (0%) Query: 24 NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83 ++ V V G+DG+ L FD I+LD+ L I GFEVL+ LR K TPV +L+ + Sbjct: 4 SYTVDVAGNGQDGLFLALHENFDLIVLDVMLPGIDGFEVLKRLRAQK-QTPVLLLTAREA 62 Query: 84 IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143 IEDKV GL+ GADDY+ KPF E +ARIRA++RR+ + + +++ DL V+L + V+ Sbjct: 63 IEDKVTGLELGADDYLPKPFAYAEFLARIRALLRRAPRNVRDILLVADLEVDLIRRRVKR 122 Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 RI LT +E+ +++LL+ R+ LT+ + ++D + + ++D I +LR K+ N Sbjct: 123 GDARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDMNFDSDTNVVDAAIKRLRAKIDN 182 Query: 204 AAGGKNYIETVWGRGYVLRENA 225 A K I T+ G GYVL + + Sbjct: 183 AY-EKKLIHTIRGMGYVLEDRS 203 >gi|332140234|ref|YP_004425972.1| response regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327550256|gb|AEA96974.1| response regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 221 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ L+ ++ L LK+ N+ V G D + + D ++LDLGL D G Sbjct: 1 MRILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDTDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+++R + PV IL+ + DK+ GL +GADDY+ KPF +EL+AR+R + RR Sbjct: 61 NVLKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +Q++I ++S++ T+ + IHL +E +++ L L+K N LY+ Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V + LRKK+ + N+I+T+ G GY + ++ + Sbjct: 181 WGEEVASNTIEVHVSHLRKKMPD-----NFIKTIRGVGYCISKSGE 221 >gi|28868885|ref|NP_791504.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. tomato str. DC3000] gi|213971922|ref|ZP_03400022.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. tomato T1] gi|301384491|ref|ZP_07232909.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato Max13] gi|302134652|ref|ZP_07260642.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852124|gb|AAO55199.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|213923347|gb|EEB56942.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. tomato T1] gi|330877107|gb|EGH11256.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966567|gb|EGH66827.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016773|gb|EGH96829.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L L + KE + LY Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL ++ K IETV G GY+ E Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSSVAFKP-IETVRGMGYLFNE 222 >gi|194466634|ref|ZP_03072621.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227543945|ref|ZP_03973994.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300909695|ref|ZP_07127156.1| response regulator [Lactobacillus reuteri SD2112] gi|77745285|gb|ABB02543.1| response regulator [Lactobacillus reuteri] gi|194453670|gb|EDX42567.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227186061|gb|EEI66132.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300893560|gb|EFK86919.1| response regulator [Lactobacillus reuteri SD2112] Length = 228 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 137/227 (60%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ LA+ +EL LK E ++ V G G+E +FD I+LDL L ++ G E Sbjct: 3 RILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K TP+ I++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 VARRVRELK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ + DL++ + + V I+LT +EY+++ +L N ++++ L Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + E ++DV+I LR K+ + G K+YI+TV G GYV+R Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227 >gi|302188250|ref|ZP_07264923.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] gi|330944499|gb|EGH46487.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330953676|gb|EGH53936.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] Length = 220 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 126/224 (56%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+LL+EDD+A+ I + L +E Y D EDG+ + L L +P Sbjct: 1 MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++LR LR ++ PV IL+ D++ GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGLDLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G AQ L+ +S++ ++ V QG + +T EYQ++ L +R +T+E N Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNT 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY +D+ E ++V I LRKKLS I TV G GY+L Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216 >gi|148264043|ref|YP_001230749.1| two component heavy metal response transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397543|gb|ABQ26176.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 223 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + + L+ F V V + GE+G++L E+D IILD+ L + G+ Sbjct: 1 MRILVVEDEIKTSAFLRKGLRESGFTVDVANDGEEGLDLALSREYDLIILDVMLPGVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R K TPV L+ +++D+++GL+ GADDY+ KPF EL+ARIR I+RR Sbjct: 61 QIIKRIRGTKRDTPVLFLTARDAVQDRIKGLELGADDYLVKPFAFSELLARIRTILRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI DL ++L V G R+ LT KE+ ++ LL+ R LT+ ++D Sbjct: 121 VRTLELIRIADLEIDLMGHRVMRGGKRLDLTPKEFALLSLLARRTGEVLTRTRIAERIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + ++DV + +LR K+ + K I TV G GYVL E Sbjct: 181 IDFESDTNVVDVHMRRLRAKVDDPFEHK-LIHTVRGVGYVLEER 223 >gi|84495357|ref|ZP_00994476.1| putative two component system response regulator [Janibacter sp. HTCC2649] gi|84384850|gb|EAQ00730.1| putative two component system response regulator [Janibacter sp. HTCC2649] Length = 244 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 132/225 (58%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + V G ++ + ++ DA++LD+ L D G Sbjct: 19 VRVLVVDDESNLTELLSMALRYEGWEVRAAATGLKAVKAAREFQPDAVVLDMMLPDFDGM 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RR+ Sbjct: 79 EVLRRMRADNDAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALMRRTT 138 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S+I GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 139 VVADESSSIIAVGDLTMDEDSHEVTRGGVEIHLTATEFELLRYLMRNPKRVLSKAQILDR 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ AG I T+ G GYVL+ Sbjct: 199 VWNYDFGGQANVVELYISYLRKKID--AGRTPMIHTMRGVGYVLK 241 >gi|317046730|ref|YP_004114378.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316948347|gb|ADU67822.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 220 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L ++ + V + L + ++ I+LDLGL D G Sbjct: 1 MKLLIVEDDALLQSGLAQALSAQGYAVDCAASAAESNALLRSGQYSLIVLDLGLPDRDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R I+ PV IL+ ++ED+V GL +GADDY+ KPF EL AR RA++RR + Sbjct: 61 TLLRQWRRDGINVPVLILTARDALEDRVDGLDAGADDYLVKPFALVELQARARALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ GDL++NL ++ V ++ + +T KE+ ++ L +R + +E LY Sbjct: 121 GHSDNLLQQGDLTLNLSSQQVLLENLPLEITPKEFALLTRLLMRVGQNVHRETLQQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+P ++V I LR+KL GK+ I+TV G GY L Sbjct: 181 WNDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRL 216 >gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803] gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803] Length = 228 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V + GEDG+ L +DAI+LD+ + ++ GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDMALNGEDGLFLALQNIYDAILLDVMMPEMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 65 EVIQKIRNEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTKQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 228 >gi|227500882|ref|ZP_03930931.1| two component response regulator [Anaerococcus tetradius ATCC 35098] gi|227216986|gb|EEI82371.1| two component response regulator [Anaerococcus tetradius ATCC 35098] Length = 223 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 132/229 (57%), Gaps = 11/229 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV--YVTDL---GEDGIELCKFYEFDAIILDLGLT 55 M++L++ED+K L L L E N+ YVTD GE+ ++L +D IILD+ L Sbjct: 1 MKVLIVEDEKKL-----LRLLEEGLNILGYVTDTASDGEEALDLAYVENYDIIILDINLP 55 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 GFEVLR +R + +L+ S I+D+VRGL GA+DY++KPF+ +EL AR+R++ Sbjct: 56 KKDGFEVLRDIRQFNREVNIIMLTARSDIDDRVRGLDYGANDYMTKPFDLKELDARMRSL 115 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +RR ++ I+ DLS + + V G + LT KE +IE L L + +T E + Sbjct: 116 LRRKSIMEETEIMINDLSFDTVKREVVYDGRILALTAKETGIIEYLFLNRQRYVTVEEIM 175 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 H++D + + V + LRKK+ A GKNYIE V G+GY + EN Sbjct: 176 EHVWDSNADDFSNTVRVHMSSLRKKIKKAT-GKNYIENVIGKGYKIYEN 223 >gi|27378232|ref|NP_769761.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27351379|dbj|BAC48386.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 224 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL G Sbjct: 1 MRLLVVEDDPDLNRQLTKALTDAGYVVDRAFDGEEGHYLGDNEPYDAVVLDIGLPKKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRRNGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G ++++ V V G+ + +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ ++RKKL + I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLL 216 >gi|319424525|gb|ADV52599.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 77/209 (36%), Positives = 127/209 (60%), Gaps = 5/209 (2%) Query: 24 NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83 ++++ V GE+G+ +DA I+D+GL + G ++R++R + P+ IL+ S Sbjct: 24 HYSIDVASDGEEGLFQALECNYDAAIIDVGLPKLDGISLIRSVRQKERDFPILILTARDS 83 Query: 84 IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143 +DKV GL +GADDY++KPF+ +ELVAR++A++RRS G A L+ G S+N + + Sbjct: 84 WQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSAGKASPLVYNGPFSLNTSSLEIRK 143 Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 I+L+G EY++ E L L + +K + H+YD + + +I+VFI +LRKKL + Sbjct: 144 GDELINLSGSEYKLFEFLMLHQGEVKSKTVLTEHIYDQDFDLDSNVIEVFIRRLRKKL-D 202 Query: 204 AAGGKNYIETVWGRGYVLR----ENAKDE 228 N IET+ G+GY L+ E++ DE Sbjct: 203 PDNQYNLIETLRGQGYRLKILAPESSADE 231 >gi|320531513|ref|ZP_08032466.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136270|gb|EFW28265.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 219 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 125/220 (56%), Gaps = 6/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + + LK+ F + T G + L FD IILD+GL DI GFEV Sbjct: 4 ILIVEDEPRIVAFLTKGLKAAGFTTHTTAAGRQAVALAVQESFDLIILDVGLPDIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 L+ LR + PV +L+ SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR +R + G Sbjct: 64 LQQLRGQGVGVPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDTTG 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q + D+ ++L +T+ ++G + L+ +E+ + E L++E L+ ++ Sbjct: 124 PDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSSVWGL 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +++V++ LR KL G+ +ETV G GY L Sbjct: 184 DFDPGSNVVEVYVSYLRNKL-----GRQRVETVRGMGYRL 218 >gi|16273595|ref|NP_439850.1| transcriptional regulatory protein [Haemophilus influenzae Rd KW20] gi|145629192|ref|ZP_01784991.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21] gi|145633643|ref|ZP_01789370.1| transcriptional regulatory protein [Haemophilus influenzae 3655] gi|145639135|ref|ZP_01794742.1| transcriptional regulatory protein [Haemophilus influenzae PittII] gi|145641031|ref|ZP_01796612.1| transcriptional regulatory protein [Haemophilus influenzae R3021] gi|148827131|ref|YP_001291884.1| transcriptional regulatory protein [Haemophilus influenzae PittGG] gi|260581049|ref|ZP_05848871.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae RdAW] gi|1176110|sp|P45337|QSEB_HAEIN RecName: Full=Transcriptional regulatory protein qseB gi|1574562|gb|AAC23354.1| transcriptional regulatory protein (ygiX) [Haemophilus influenzae Rd KW20] gi|144978695|gb|EDJ88418.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21] gi|144985520|gb|EDJ92336.1| transcriptional regulatory protein [Haemophilus influenzae 3655] gi|145271697|gb|EDK11607.1| transcriptional regulatory protein [Haemophilus influenzae PittII] gi|145274192|gb|EDK14057.1| transcriptional regulatory protein [Haemophilus influenzae 22.4-21] gi|148718373|gb|ABQ99500.1| transcriptional regulatory protein [Haemophilus influenzae PittGG] gi|260092289|gb|EEW76230.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae RdAW] gi|309750716|gb|ADO80700.1| Probable two-component regulator,transcriptional regulatory component QseB [Haemophilus influenzae R2866] Length = 221 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + + +++ L F V + TD G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTD-GKTGMAALTSAPYDAVVLDLTLPKLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 60 LEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ S+I + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 120 YGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL GK +I TV G GY L Sbjct: 180 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216 >gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 228 >gi|256060736|ref|ZP_05450900.1| DNA-binding response regulator [Brucella neotomae 5K33] gi|261324726|ref|ZP_05963923.1| FeuP [Brucella neotomae 5K33] gi|261300706|gb|EEY04203.1| FeuP [Brucella neotomae 5K33] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + + + + V GE+G +DA++LD+GL + G Sbjct: 1 MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYRGDTEPYDAVVLDIGLPQMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R + + PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S V G L ++ + G + LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKK+ G + IETV G GY +R + E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRMRSGGEGEA 224 >gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142] gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 124/223 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L + + V + GE G E + +D I+LD+ L + G Sbjct: 2 MRILLVEDDERIAKVLAASLTEQRYTVDMAGDGEKGWEFIEALAYDLILLDVMLPKLTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R + + PV +L+ + EDKV GL GADDY+ KPF+ EL+ARIRA++RR Sbjct: 62 GLCQRIRQSGYTIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALLRRGN 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L ++ V +HLT KEY ++EL +N L++ L++L+ Sbjct: 122 VAPNPILEWQQLRLDPSNYEVTYSDKLLHLTPKEYGLLELFLRNENIVLSRSAILDNLWS 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D P + + V I LRKKL ++IETV+G GY L++ Sbjct: 182 FEDPPSEEAVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRLKQ 224 >gi|149378109|ref|ZP_01895829.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter algicola DG893] gi|149357594|gb|EDM46096.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter algicola DG893] Length = 226 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 136/227 (59%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L+IEDD+ +A+ + LK +F V G++G+ + ++D +I+D L + G Sbjct: 1 MKALVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRMLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R PV ILS + ++D+V GL+ G DDY++KPF+ EL+ARI ++VRR+R Sbjct: 61 SIIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNR 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ V DL ++L A+TV+ GH I + +E++++E L +T+ M L + Sbjct: 121 QSAETETVLRVADLEMDLLARTVKRAGHNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV I +LR K+ + ++T+ G GY+LRE A Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKI-DKEFETPLLQTIRGAGYMLRETA 226 >gi|303240444|ref|ZP_07326961.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592009|gb|EFL61740.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 224 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 130/227 (57%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSI-ELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTD 56 MRIL++ED+ LA ++ E+ML+ N Y+ D+ G DG++ +D I+LD+ L Sbjct: 1 MRILIVEDEIRLADTLREIMLE----NKYIVDVVYNGADGLDYAMTGVYDVIVLDVMLPK 56 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 I GFEV++ +R K+ TPV +L+ + DK+ GL SGADDY++KPF +EL+ARIRA+ Sbjct: 57 INGFEVVKTMRKNKLQTPVILLTAKDEVSDKIAGLDSGADDYLTKPFVPDELLARIRALS 116 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RR + DLS+NL +E +HL KE++++ LL L + KE + Sbjct: 117 RRQGEIIMDSMQFSDLSLNLATYMLECGSKSVHLGYKEFEILRLLMLNPTMVVPKETLIT 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++V+I LRKK S G K + TV GY L E Sbjct: 177 RVWGDESDAEDNNVEVYISFLRKKFS-YLGSKATVSTVRKIGYFLEE 222 >gi|145635435|ref|ZP_01791136.1| transcriptional regulatory protein [Haemophilus influenzae PittAA] gi|260582810|ref|ZP_05850596.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae NT127] gi|145267309|gb|EDK07312.1| transcriptional regulatory protein [Haemophilus influenzae PittAA] gi|260094136|gb|EEW78038.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae NT127] gi|301170463|emb|CBW30070.1| DNA-binding response regulator in two-component regulatory system with QseC [Haemophilus influenzae 10810] Length = 221 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + + +++ L F V + TD G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTD-GKTGMAALTSAPYDAVVLDLTLPKLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 60 LEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ S+I + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 120 YGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL GK +I TV G GY L Sbjct: 180 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216 >gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 133/224 (59%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A + L E + V V G G+EL +D I+LDL L I G E Sbjct: 3 RILVIEDETEIASFLRRGLSLEGYQVDVAFDGTRGLELASTGTYDLIVLDLMLPGIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR A + P+ +L+ ++ D+V GL++GADDY+ KPF EEL+ARIRA +RR + Sbjct: 63 VARRLR-ADSNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRRQS 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ ++ +L+++ ++ + V R+ LT KEY ++EL N LT+++ + +++ Sbjct: 122 GQAQDVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDIIYDRVWN 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I++V++ LR+KL A G I TV GY+LRE+ Sbjct: 182 YDFGGESNILEVYVRYLRQKLE-ANGEPRLIHTVRSVGYILRED 224 >gi|269137806|ref|YP_003294506.1| DNA-binding response regulator in two-component regulatory system with QseC [Edwardsiella tarda EIB202] gi|267983466|gb|ACY83295.1| DNA-binding response regulator in two-component regulatory system with QseC [Edwardsiella tarda EIB202] gi|304557861|gb|ADM40525.1| Two-component system response regulator QseB [Edwardsiella tarda FL6-60] gi|308084102|gb|ADO13167.1| QseB [Edwardsiella tarda] gi|308084104|gb|ADO13168.1| QseB [Edwardsiella tarda] Length = 219 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LLIEDD+ + I+ L F + + TD G+ G+ + +DA+ILDL L I G Sbjct: 1 MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFTD-GQLGMTALESAPYDAVILDLSLPGIDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+LR R A + PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR+ Sbjct: 60 LEILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRN 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G AQ+L+ G +S++ + T + G + L KE+ ++ELL L + + LY Sbjct: 120 HGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D+ ++V I LR+KL G ++I TV G GY L ++ Sbjct: 180 SWDDDVSSNAVEVHIHHLRRKL-----GSHFIRTVHGVGYTLGDS 219 >gi|237798950|ref|ZP_04587411.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021804|gb|EGI01861.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L L + KE + LY Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL + K IETV G GY+ E Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDGSVAFKP-IETVRGMGYLFNE 222 >gi|154496872|ref|ZP_02035568.1| hypothetical protein BACCAP_01165 [Bacteroides capillosus ATCC 29799] gi|150273830|gb|EDN00943.1| hypothetical protein BACCAP_01165 [Bacteroides capillosus ATCC 29799] Length = 263 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+ EDD L S++ + + + V G + + + E+D ++LD+ + + G Sbjct: 40 MRLLVAEDDLKLLKSLKHIFEKNKYMVDAVSTGTEALAYAETEEYDGMVLDIMMPGLDGI 99 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR++R ISTP L+ + ++ +V GL +GADDY+SKPF+ EL+AR+RA++RR Sbjct: 100 AVLRSVRGQGISTPALFLTAKTEVDQRVEGLDAGADDYLSKPFSTSELLARVRAMLRRKD 159 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+ G+L +N + G L+G+E+Q++E+L R N +T + F++H++ Sbjct: 160 NYVPDLLRAGELVLNRSTYELSCNGQTQALSGREFQIMEMLLQRPNFIITTDAFMSHVWG 219 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +V ++ V I LRKKL+ A I V GY L + Sbjct: 220 WDSEVDVSVVWVHISNLRKKLA-ALKAPATIRFVRNAGYTLEQ 261 >gi|221215180|ref|ZP_03588146.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1] gi|221164864|gb|EED97344.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1] Length = 224 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G L+ + ++ + G + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL N+ I T+ G GY+L Sbjct: 181 LDESVNADAIEIYVYRLRKKLENSGVA---IVTLRGLGYLL 218 >gi|259047938|ref|ZP_05738339.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035358|gb|EEW36613.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 227 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 130/221 (58%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+ LA ++++ML+ + ++V + GED + + +D I+LD+ + G Sbjct: 1 MRILVAEDEIDLAEALKMMLEMQKYSVEMVHDGEDALFYAESTPYDLILLDVMMPKKSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR I TPV +L+ S +EDKV GL+ GADDY++KPF EL+AR+++++RR Sbjct: 61 EVVRELRSNGIHTPVLMLTAKSQLEDKVTGLEEGADDYLTKPFEGAELLARVKSLLRRPN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ G++ +N D T+ ++ L KE+Q++E + N L+ ++ + ++ Sbjct: 121 VFVASVMTLGNVELNRDTFTMMTSKGQVLLNNKEFQLMEYFMMNSNQVLSTDLIMEKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E+ ++ V I LRKKL+ I++ G GY L Sbjct: 181 LDSEAEINVVWVNISSLRKKLATIEADVT-IKSARGLGYQL 220 >gi|258624938|ref|ZP_05719865.1| DNA-binding response regulator [Vibrio mimicus VM603] gi|258582794|gb|EEW07616.1| DNA-binding response regulator [Vibrio mimicus VM603] Length = 219 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L + I L + + +V +L +DGI+ E+D I+LDLGL + Sbjct: 1 MKILVVEDDVQLGNQI---LSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ V +G I LT EY++I +++ + H Sbjct: 118 RASGNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + I+VFI ++RKK++ + I+TV G GY L Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PDVIKTVRGLGYQL 216 >gi|170723552|ref|YP_001751240.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|169761555|gb|ACA74871.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 224 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + F V + G DG+ L ++ I+LD+ L + G+ Sbjct: 1 MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ +ED++ GL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + GDL ++L A+ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 SHEPLQVQVGDLWIDLMARKASRGGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +++V I +LR KL K + T+ G GYVL A Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPFDNK-LLHTIRGMGYVLENRA 223 >gi|71736826|ref|YP_275872.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485923|ref|ZP_05639964.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627099|ref|ZP_06460053.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648110|ref|ZP_06479453.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. aesculi str. 2250] gi|298487951|ref|ZP_07005990.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557379|gb|AAZ36590.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157502|gb|EFH98583.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866032|gb|EGH00741.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986733|gb|EGH84836.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L L + KE + LY Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL + K IETV G GY+ E Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 222 >gi|94314717|ref|YP_587926.1| winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358569|gb|ABF12657.1| two component transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] Length = 242 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 14/229 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-------FDAIILDL 52 MR+LL+EDD + S+++ L+ E F V +V D G+ G++ +D ++LDL Sbjct: 1 MRVLLVEDDAMIGESVKVALRQEGFTVDWVRD-GDAGLDAASDQHGPRADGGYDVVLLDL 59 Query: 53 GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 GL PG +VL+ LR + TPV IL+ ++ D+V GL +GADDY+ KPF+ +EL AR+ Sbjct: 60 GLPRRPGLDVLKTLRARNVRTPVLILTARDAVADRVAGLNAGADDYLIKPFDLQELAARM 119 Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+VRR+ G A+ ++ GD+ +N + G + L+ +E+ ++ L R + Sbjct: 120 HALVRRAEGRAEPVLRYGDIMLNPATREATQAGASVRLSAREFALLSALMARPGKVWSVP 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY DE ++V+I LR+K G I + G GYV+ Sbjct: 180 QLQERLYGWDDEVGSNTVEVYIHALRRKF-----GAALIRNIRGVGYVI 223 >gi|330994125|ref|ZP_08318053.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp. SXCC-1] gi|329758592|gb|EGG75108.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp. SXCC-1] Length = 226 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 133/225 (59%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 M IL++EDD + + + LK V +TD G+DG+ + +FD IILD L I G Sbjct: 1 MHILVVEDDPTVRNFVAKGLKEAGHLVELTDNGKDGLFMAVSEKFDLIILDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L +R +TPV +LS ++ ++D+V+GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 VRLLETIRAQNNTTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRG 120 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R A Q+ + DL ++L ++TV G +I L +E++++E L+ +T+ M L Sbjct: 121 RTEAAPQTKLELADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D +P+ +IDV + +LR+K+ G I T+ GY+LR Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPF-GTPLIHTIRNAGYMLR 224 >gi|209809498|ref|YP_002265036.1| transcriptional regulator, response regulator [Aliivibrio salmonicida LFI1238] gi|208011060|emb|CAQ81477.1| transcriptional regulator, response regulator [Aliivibrio salmonicida LFI1238] Length = 225 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ I L+ E F V + G++G+ + E+ I+LD L +I G Sbjct: 1 MKILVIEDDQTTREFIAKALEQEGFIVDNSGDGKEGLMMAISCEYQLIVLDRMLPNIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L A+R +TPV ILS + S++ +V GL +G+DDY++KPF EL+ARI I+RR+R Sbjct: 61 KILSAIRATGNNTPVLILSALDSVDQRVEGLIAGSDDYLTKPFALAELLARINIILRRNR 120 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I +L +NL ++ V + + I L KE+ ++ L+ N +++ Sbjct: 121 PIESFSNEIKINNLLINLRSQKVTINNNAISLQNKEFILLRYLAEHVNEVVSRMRLFEAA 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D +P+ +IDV I KLRKKL G N IETV G GYV+R+ Sbjct: 181 WDYHFDPKTNVIDVHIAKLRKKLEQ-GGAINLIETVRGAGYVIRQ 224 >gi|154247327|ref|YP_001418285.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161412|gb|ABS68628.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 223 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 124/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L ++ + ++ +VT L +D E F+ ++LDL L D G Sbjct: 1 MRILLVEDDPVLGMAVRDQIVADGHTPDWVTRL-DDATEAIHAAAFELVLLDLMLPDGRG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + L+ LRVA TPV +L+ I D++ L +GADDY+ KPF+ EL ARIRA+ RR Sbjct: 60 LDFLKRLRVAGDVTPVIVLTARDQISDRIAALDAGADDYLVKPFDLFELSARIRAVGRRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ L+ GD+ V+L A++V G + LTG+E+ + E R + ++K LY Sbjct: 120 AGNPNPLVSFGDIEVDLAARSVWRAGRPVVLTGREWSLFEAFVQRPHQLMSKPQLEERLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V++ +LRKKL G IETV G GY L Sbjct: 180 SFDAEVESNTIEVYVGRLRKKL-----GAQVIETVRGMGYRL 216 >gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 232 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 10 MRLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 232 >gi|258593609|emb|CBE69950.1| putative Two-component transcriptional regulator; putative transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis [NC10 bacterium 'Dutch sediment'] Length = 225 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ A ++ L E V + + G++G L ++D I+LD L G Sbjct: 1 MRLLLVEDDQKAARVLKKGLAEEGVVVDIANSGDEGEYLASVNDYDVIVLDWLLPGKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R LR +STP+ +++ ++ D+++GL +GADDY+ KPF EL+ARIRA++RR Sbjct: 61 QLCRELRARGLSTPILMVTAKDALRDRIKGLDTGADDYMVKPFAFAELLARIRALMRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ DL ++ + V G I LT KEY +IE L+ R +T+ H+++ Sbjct: 121 GPRPTMLRVADLVIDPASHRVTRGGASIKLTTKEYAIIEFLARRVGEVVTRTTLGEHIWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DV I LRKK+ +A + I TV GRGY L E Sbjct: 181 DEFDNLTNLVDVHISNLRKKI-DAGSTVSLIHTVRGRGYRLSE 222 >gi|165976486|ref|YP_001652079.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307245974|ref|ZP_07528056.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249167|ref|ZP_07531172.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250316|ref|ZP_07532266.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252700|ref|ZP_07534591.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254952|ref|ZP_07536771.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257108|ref|ZP_07538881.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259390|ref|ZP_07541115.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261545|ref|ZP_07543213.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263734|ref|ZP_07545340.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876587|gb|ABY69635.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306852909|gb|EFM85132.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854337|gb|EFM86535.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857643|gb|EFM89749.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859732|gb|EFM91754.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862070|gb|EFM94045.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864379|gb|EFM96289.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866326|gb|EFM98189.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868668|gb|EFN00477.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870855|gb|EFN02593.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 238 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK + ++L L +NF V G+ G E E+DA++LDL L + G Sbjct: 18 MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYDAVVLDLTLPKMDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R + PV IL+ ++++++ G SGADDY+ KPF E+V R++A++RR Sbjct: 78 AILKNWRKENLDIPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRY 137 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I GDL+++ V + I+LT KE+Q++ L + K+ LT+ LY Sbjct: 138 KQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRSAIEEKLYS 197 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++V+I LRKKL GK +I+TV G GY Sbjct: 198 WDNDVSSNAMEVYIHNLRKKL-----GKEWIKTVHGIGY 231 >gi|319793239|ref|YP_004154879.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315595702|gb|ADU36768.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 219 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + ++ +L++E + V +V D GE + ++D ++LDLG+ G Sbjct: 1 MRLLLLEDDVMIGEAVLDLLRAEQYAVDWVKD-GEAAESALRTQQYDLVLLDLGVPRRDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVLR+LR K PV I + S++ ++ GL +GADDY+ KP++ +EL+ARIRA++RR+ Sbjct: 60 LEVLRSLRARKQRMPVLIATARDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+ + +S+N + V V G + L+ +E+ +IE L R L++ LY Sbjct: 120 AGRAEPVYEHMGVSINPATREVTVAGQPVVLSAREWAVIEPLLARPGMVLSRAQLEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +DE ++V++ LRKKL G +I V G GY++ Sbjct: 180 SWKDEISSNAVEVYVHGLRKKL-----GAEFIRNVRGVGYMV 216 >gi|46143552|ref|ZP_00204506.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208535|ref|YP_001053760.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae L20] gi|190150390|ref|YP_001968915.1| QseB family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250189|ref|ZP_07336391.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253361|ref|ZP_07339510.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|126097327|gb|ABN74155.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915521|gb|ACE61773.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648043|gb|EFL78250.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651252|gb|EFL81406.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 221 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK + ++L L +NF V G+ G E E+DA++LDL L + G Sbjct: 1 MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYDAVVLDLTLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R + PV IL+ ++++++ G SGADDY+ KPF E+V R++A++RR Sbjct: 61 AILKNWRKENLDIPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I GDL+++ V + I+LT KE+Q++ L + K+ LT+ LY Sbjct: 121 KQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRSAIEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++V+I LRKKL GK +I+TV G GY Sbjct: 181 WDNDVSSNAMEVYIHNLRKKL-----GKEWIKTVHGIGY 214 >gi|258621919|ref|ZP_05716949.1| DNA-binding response regulator [Vibrio mimicus VM573] gi|262171352|ref|ZP_06039030.1| two-component system response regulator QseB [Vibrio mimicus MB-451] gi|258585857|gb|EEW10576.1| DNA-binding response regulator [Vibrio mimicus VM573] gi|261892428|gb|EEY38414.1| two-component system response regulator QseB [Vibrio mimicus MB-451] Length = 219 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L + I L + + +V +L +DGI+ E+D I+LDLGL + Sbjct: 1 MKILVVEDDVQLGNQI---LSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ GDLS++ V +G I LT EY++I +++ + H Sbjct: 118 RASGNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFVHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + I+VFI ++RKK++ + I+TV G GY L Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PDVIKTVRGLGYQL 216 >gi|288939775|ref|YP_003442015.1| winged helix family two component transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895147|gb|ADC60983.1| two component transcriptional regulator, winged helix family [Allochromatium vinosum DSM 180] Length = 219 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 131/223 (58%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD A ++ L + F V G G L + +D I+LDLGL PG Sbjct: 1 MRLLLVEDDPAQIAALLPALNAAGFAVDQAQDGAIGERLGETEPYDVIVLDLGLPKRPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR R +S PV IL+ + ++V GL++GADDY+ KPF+ EEL+AR+ A+ RR+ Sbjct: 61 EVLRHWRARGLSLPVLILTARDAWPERVDGLKAGADDYLGKPFHVEELIARLNALTRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ + + G LS++ D + V G LTG E++++ L L L+K L H+Y Sbjct: 121 GNLRPALAVGGLSLDADRQQVICPDGEVRELTGTEFRLLRYLMLNPGRILSKAQLLEHVY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +I+V+I +LR+K+ G++ I+T+ G+GY+L+ Sbjct: 181 ELEAERGDNLIEVYIRRLREKI-----GRDRIQTLRGQGYLLK 218 >gi|311108903|ref|YP_003981756.1| transcriptional activator protein IrlR 5 [Achromobacter xylosoxidans A8] gi|310763592|gb|ADP19041.1| transcriptional activator protein IrlR 5 [Achromobacter xylosoxidans A8] Length = 224 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED++ LA + L N+ V V G DG ++D ++LD+ L + GF Sbjct: 1 MRILLIEDERKLADYVRKGLTEHNYVVDVARDGIDGRHAAIEGDYDVVVLDVMLPGVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR K TPV +L+ +ED+VRGL+ GADDY+ KPF EL+ARI+A++RR R Sbjct: 61 GVLADLRKHK-QTPVLMLTARDKVEDRVRGLEGGADDYLVKPFAFSELLARIQALLRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +L+ DL ++L + + G R+ LT KE+ ++ L+ R L++ + ++D Sbjct: 120 GQESTLLKLADLEMDLARRKAQRGGMRLDLTAKEFTLLTLMLRRHGQVLSRTVLAEQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+V + +LR K+ + K + TV G GYVL Sbjct: 180 MNFDSDTNVIEVAVRRLRAKIDDPFETK-LLHTVRGMGYVL 219 >gi|317402058|gb|EFV82653.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 261 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 9/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL+IEDD+ LA ++ L+ + D +DG+ + ++ FD +ILD+GL + Sbjct: 30 MRILVIEDDEDLADALVRRLRRLG---HAVDCQKDGLSADGVLQYETFDLVILDIGLPRM 86 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFE+L LR TPV L+ IED+V L +GADDY++KPF+ EL AR RA++R Sbjct: 87 SGFEILHRLRDRGSKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLR 146 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R A ++ GDL ++ A+ V + G RI L +EY ++E+L N ++K N Sbjct: 147 RPSVQAAGVLRFGDLVIDSAARQVSLAGQRIDLPKREYSLLEILLGGMNRAVSKAEIANK 206 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ D+ I+V+I +LR+KL G IET G GY+L+ Sbjct: 207 LFAFDDDAAPNAIEVYIARLRRKLE---GSPLRIETQRGTGYLLK 248 >gi|308084100|gb|ADO13166.1| QseB [Edwardsiella tarda] Length = 219 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LLIEDD+ + I+ L F + + TD G+ G+ + +DA+ILDL L I G Sbjct: 1 MRVLLIEDDRLIGDGIKAGLNKMGFTLDWFTD-GQLGMTALESAPYDAVILDLSLPGIDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+LR R A + PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR+ Sbjct: 60 LEILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRN 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G AQ+L+ G +S++ + T + G + L KE+ ++ELL L + + LY Sbjct: 120 HGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LR+KL G ++I TV G GY L Sbjct: 180 SWDDDVSSNAVEVHIHHLRRKL-----GSHFIRTVHGVGYTL 216 >gi|167767348|ref|ZP_02439401.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1] gi|317497415|ref|ZP_07955737.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711323|gb|EDS21902.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1] gi|291559353|emb|CBL38153.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316895335|gb|EFV17495.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 223 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K L + I+ L E+++V GE+ ++ + +D ++LD+ L GF Sbjct: 1 MRILVVEDEKDLRNIIKKRLVREHYSVDACGDGEEALDYMEMTSYDGVLLDIMLPGKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R TP+ +L+ IED+V+GL GADDY+ KPF EEL+ARIR ++RR Sbjct: 61 AVLKEVRQMGNDTPILLLTARDGIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL+++ D + V G I L+ KE+ ++E L +N +T++ + ++ Sbjct: 121 QFVTNQLKIADLTLDRDTRIVTRAGKEISLSSKEFMVLECLMRNQNIVMTRQQIEQNAWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +IDV+I LRKK+ +A K I TV G GYV+RE Sbjct: 181 YDYEGGSNVIDVYIRYLRKKI-DAGYEKKLIHTVRGTGYVMRE 222 >gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 228 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 228 >gi|163801134|ref|ZP_02195034.1| DNA-binding response regulator [Vibrio sp. AND4] gi|159175483|gb|EDP60280.1| DNA-binding response regulator [Vibrio sp. AND4] Length = 219 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I L++ N +V +L +DGI+ E+DAI+LDLGL + Sbjct: 1 MKILVVEDEPRLGEQILATLEN---NGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VLR +R I+TPV ILS ++ +V GL +GADDY++KPF EL AR+RA +R Sbjct: 58 DGLTVLRGIRDENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+ ++ GDLS++ + V QG + LT EY+++ +++ + H Sbjct: 118 RASGNPSPVMQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFVHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + I+VFI ++RKK++ I+TV G GY L Sbjct: 178 VYKQDFDRDSNTIEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216 >gi|197337216|ref|YP_002158034.1| probable transcriptional regulatory protein YedW [Vibrio fischeri MJ11] gi|197314468|gb|ACH63917.1| probable transcriptional regulatory protein YedW [Vibrio fischeri MJ11] Length = 225 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 134/224 (59%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ + L+ E F T+ G++G+ + ++ IILD L ++ G Sbjct: 1 MKILVIEDDQTTRDFVTKALEQEGFITDSTEDGKEGLMMAISCDYQLIILDRMLPNLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L A+R +TPV ILS + S++ +V GL +G+DDY++KPF EL+ARI I+RR+R Sbjct: 61 KILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALTELLARINIILRRNR 120 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + + +L++NL ++ V + + + L KE+ ++ L+ + +++ Sbjct: 121 PIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAA 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D +P+ +IDV I KLRKKL N +G + IETV G GYVLR Sbjct: 181 WDYHFDPKTNVIDVHIAKLRKKLDN-SGAVDLIETVRGAGYVLR 223 >gi|146307023|ref|YP_001187488.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145575224|gb|ABP84756.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 222 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 121/220 (55%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D +D IILDLGL PG Sbjct: 1 MRLLLVEDHVPLADELTASLTRQGYAVDWLADGRDAAYQGASEPYDLIILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R +STPV +L+ S +++ GL++GADDY++KPF+ EEL RI+A++RR+ Sbjct: 61 EVLQEWRAGGLSTPVLVLTARGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + L ++ + V I LT E++++ L L+K +HLY Sbjct: 121 GLANQPQLEAAGLQLDESRQCVTSGDEVIDLTAAEFRLLRYFMLHPGQILSKSHLADHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG E + +I+V + +LR KL G+N IET G+GY Sbjct: 181 DGETERDSNVIEVHVNRLRGKL-----GRNVIETRRGQGY 215 >gi|56476059|ref|YP_157648.1| two-component response regulatory protein [Aromatoleum aromaticum EbN1] gi|56312102|emb|CAI06747.1| Two-component response regulatory protein [Aromatoleum aromaticum EbN1] Length = 228 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD+ +A+ + LK + V G + +D +ILDLGL +PG Sbjct: 1 MRILLAEDDQVIANGLGRALKRSGYAVDHVASGSEADTALATQTYDLLILDLGLPKLPGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR K + PV IL+ +E++VRGL +GADDY++KPF EL AR+RA+ RR Sbjct: 61 DVLKRLRARKSALPVLILTAQDGVEERVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G LS + + ++ G + L+ +E ++E+ +LR ++K+ ++HL Sbjct: 121 GQPRC-IEIGSLSYDQADRVAKINGQVVELSAREVGLLEVFALRVGRLVSKDQIVDHLCG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKKL ++ I TV G GY L Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEDSG---VRIVTVRGLGYCL 217 >gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] Length = 235 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 133/226 (58%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ + I L+ EN++V G++ ++ E+D +ILD+ L + GF Sbjct: 8 MRILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIFSAEYDVLILDIMLPKLDGF 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R I TPV L+ S++D+V+GL GADDY+ KPF+ EEL+ARIR I+R++ Sbjct: 68 EVLKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRKNS 127 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S + +L+V+ + TV RI L+ KE+ ++E + K ++K+ H Sbjct: 128 IKSDSVGNIFKIANLTVDCNEHTVFRDEKRIKLSPKEFSILEYMIRNKKRVISKDKIEQH 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +YD E +I+V I LRKK+ K I T+ G GYVL+E Sbjct: 188 IYDFDSEINSNVIEVHIRLLRKKIDTDFTPK-LIHTIRGVGYVLKE 232 >gi|296117440|ref|ZP_06836028.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976042|gb|EFG82832.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] Length = 226 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 M IL++EDD + + + L+ +TD G+DG+ L +FD IILD L I G Sbjct: 1 MHILVVEDDPTVRNFVAKGLREAGHLTELTDNGKDGLFLAVSEKFDLIILDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L +R +TPV +LS ++ ++D+V+GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 LRLLETIRAQNNATPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRG 120 Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R Q+ +V DL ++L ++TV G +I L +E++++E L+ +T+ M L Sbjct: 121 RTEQAPQTKLVVADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D +P+ +IDV + +LR+K+ G I T+ GY+LR Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPF-GMPLIHTIRNAGYMLR 224 >gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ +A ++L L+ E + + G DG+ + ++D I+LD+ L ++ G + Sbjct: 4 RILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQYREEQWDLILLDIMLPEMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + TPV +L+ S +EDKV+GL GA+DY++KPF EEL+ARIR +R S+ Sbjct: 64 VLKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQN 123 Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + G LS+N + V G I LT +EY ++ L LT+E L ++ Sbjct: 124 ASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I +R+KL A I+TV G GYVL+EN Sbjct: 184 GFDYYGDTNVVDVYIRYVRQKLE-IANATPIIQTVRGVGYVLKEN 227 >gi|258543034|ref|YP_003188467.1| two component response regulator [Acetobacter pasteurianus IFO 3283-01] gi|256634112|dbj|BAI00088.1| two component response regulator [Acetobacter pasteurianus IFO 3283-01] gi|256637172|dbj|BAI03141.1| two component response regulator [Acetobacter pasteurianus IFO 3283-03] gi|256640224|dbj|BAI06186.1| two component response regulator [Acetobacter pasteurianus IFO 3283-07] gi|256643281|dbj|BAI09236.1| two component response regulator [Acetobacter pasteurianus IFO 3283-22] gi|256646336|dbj|BAI12284.1| two component response regulator [Acetobacter pasteurianus IFO 3283-26] gi|256649389|dbj|BAI15330.1| two component response regulator [Acetobacter pasteurianus IFO 3283-32] gi|256652375|dbj|BAI18309.1| two component response regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655433|dbj|BAI21360.1| two component response regulator [Acetobacter pasteurianus IFO 3283-12] Length = 225 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 134/226 (59%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 MR+LL+EDD+ + + + L V + G++G+ L +FD IILD L + G Sbjct: 1 MRVLLVEDDQTVRNFVAKGLAEAGHLVEQAEDGKNGLSLATSEKFDVIILDRMLPGGVEG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L+ LR +TPV +LS ++ +++KV GL++G DDY++KPF+ EL AR+ A+VRR+ Sbjct: 61 LHILQTLRNQNNTTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRN 120 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R A Q+ + GDL ++L ++ V+ G +I L +E++++E L +T+ M L Sbjct: 121 RNEAQPQTRLTIGDLEIDLLSRNVKRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D +P+ +IDV I +LR+K+ + T+ GY+L+E Sbjct: 181 VWDYHFDPQTNVIDVHISRLRQKIDRPF-HHPLVHTIRNAGYMLQE 225 >gi|307721598|ref|YP_003892738.1| two component transcriptional regulator, winged helix family [Sulfurimonas autotrophica DSM 16294] gi|306979691|gb|ADN09726.1| two component transcriptional regulator, winged helix family [Sulfurimonas autotrophica DSM 16294] Length = 218 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD+ + ++ + + V GEDG L +D II+D L G Sbjct: 1 MKLLIIEDDENILSFLKRGFDEDGYIVDSALDGEDGEYLAGMNSYDVIIMDWMLPYKSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ ++LR KI+TP+ ILS IEDKV GLQ GADDY++KPF+ +ELVAR+ A+ RR Sbjct: 61 EITKSLREKKITTPILILSAKGEIEDKVTGLQHGADDYLAKPFSYKELVARVEALHRRDI 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +LI G++ +N D KTV I L+ KEY+++ L KN ++ M L++ Sbjct: 121 SNGVNLITLGNIIINSDTKTVRKDDENIELSAKEYELLLFLIKHKNGFVSNAMIEEQLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +I V I LRKKL GK +I++ G GY Sbjct: 181 NQEYINSNVIQVTIYHLRKKL-----GKEFIKSNRGIGY 214 >gi|167834881|ref|ZP_02461764.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 225 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E F V GE + K +DA++LD+ L + G Sbjct: 1 MKLLLVEDNAELAHWIIDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GDL + + G + L +E+ ++E L L++ T++K ++ +Y Sbjct: 121 GVGVTQLACGDLVYLFATREFQCGGVPLALRRREHAILETLMLQQGKTVSKARLMDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DEP ID++I +LRK LS G I T+ G GY+LR Sbjct: 181 LDDEPSADAIDIYIHRLRKHLS---GSLAQIITLRGLGYILR 219 >gi|126656210|ref|ZP_01727594.1| Multi-component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126622490|gb|EAZ93196.1| Multi-component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 609 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD+ + + +LK ++F V V G++G++ +++D IILDL L I G Sbjct: 1 MKILLIEDDQLTSEYLAAVLKDDHFVVDVVFNGQEGLDYATLWDYDVIILDLQLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR K TP+ IL+ + GL +GADDY+ KP + +L+ARIRA+ RR Sbjct: 61 SLCRQLRSKKKQTPILILTACQETDKISIGLNAGADDYVLKPCDPPQLIARIRALTRRGN 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S ++T G LS+NL + V + I+L +EY ++EL ++ + +NHL+ Sbjct: 121 NISSSSVLTWGQLSLNLVSAQVTYKQQVINLRNQEYHLLELFLRHPQRIFSRSLIINHLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + D P + + LR K+ A ++ ET++G GY L Sbjct: 181 ETGDIPSESAVTNLVKDLRNKIKAAGMEEDMFETIYGLGYRL 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 14/118 (11%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF------DAIILDLGLTD 56 I++++DD + +I +L F + T L E + +F+ D +ILDL + Sbjct: 492 IMIVDDDPIIVTTIRKILHPWGFQI--TGLSE----VNQFWNILTQTNPDLLILDLEMPT 545 Query: 57 IPGFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 I G E+ R +R K + P+ +++ + I+ + ++GA+D++SKP K ELVAR+ Sbjct: 546 INGIELCRVVRQDKKYATLPIIVVTAHTEIKYLQKSFEAGANDFLSKPIIKSELVARV 603 >gi|120556645|ref|YP_960996.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326494|gb|ABM20809.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 226 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 136/227 (59%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L+IEDD+ +A+ + L+ +F V G++G+ + E+D +I+D L + G Sbjct: 1 MKALVIEDDRDVANYLLKGLRESDFVVDHAADGKEGMMMAASEEYDIMIVDRMLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R TPV ILS + ++D+V GL+ G DDY++KPF+ EL+ARI +++RR+R Sbjct: 61 SIIKTVRATGNQTPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNR 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ V DL ++L A+TV+ G I + +E++++E L +T+ M L + Sbjct: 121 QAAETETVLKVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV I +LR K+ + ++TV G GY+LRE A Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKI-DKEFDTPLLQTVRGAGYMLRETA 226 >gi|256847496|ref|ZP_05552942.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256716160|gb|EEU31135.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 228 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 137/227 (60%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ LA+ + L LK E + V G G+E +FD I+LDL L ++ G E Sbjct: 3 RILIIEDEENLANFVNLELKHEGYETDVELDGRAGLEAALNEDFDVILLDLMLPELNGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K +TP+ I++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 VARRVREEK-NTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + Q+ + DL++ + + V I+LT +EY+++ +L N ++++ L Sbjct: 122 EDGNNNNHQTTVKYQDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRQELL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + E ++DV+I LR K+ + G K+YI+TV G GYV+R Sbjct: 182 SKVWGYDAKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227 >gi|221195264|ref|ZP_03568320.1| DNA-binding response regulator [Atopobium rimae ATCC 49626] gi|221185167|gb|EEE17558.1| DNA-binding response regulator [Atopobium rimae ATCC 49626] Length = 257 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 134/228 (58%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++ L SI L+ + + V + D G + +E+ + ++D I+LDL L + G Sbjct: 29 LKILVVEDERELLTSIGEGLEIDGYYVDLIDNGTEALEMAQIEQYDLILLDLNLPGVDGL 88 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR T V ILS SS+ D++ GL +GADDY+ KPF EL ARIR ++RR Sbjct: 89 DLLRTLRREHSETKVLILSARSSVADRIVGLDAGADDYLVKPFAFGELEARIRNLLRREY 148 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H ++ +V+G+L ++ ++ V + ++LT KE ++E L R T ++ E L+H +D Sbjct: 149 THGETSLVSGELRLDTASRQVFAKDSEVNLTKKETAILEYLMRRAGTVVSSEELLSHAWD 208 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +P + V I +RKKL G + I G GY L+E++ D+ Sbjct: 209 SNVDPFSNSVRVHIFSVRKKLREVL-GYDPISNKVGEGYYLKEDSDDK 255 >gi|296134173|ref|YP_003641420.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032751|gb|ADG83519.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 228 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 130/224 (58%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ +A +EL LK E + V + G G+E +FD IILD+ L + G E Sbjct: 5 KILIIEDEVKIARFLELELKYEGYMVEQENDGRSGLERATGGKFDLIILDVMLPSLNGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR LR TPV +L+ + DKV GL GADDY++KPF EEL+ARIRA+++R + Sbjct: 65 VLRRLRQVS-ETPVIMLTAKDEVTDKVMGLDIGADDYMTKPFAIEELLARIRAVLKRRKP 123 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +I GDL +NL+ +V + LT KEY ++ L KN LT++ L ++ Sbjct: 124 ANHKRDIITAGDLKINLEQHSVCFNKEPVDLTKKEYDLLCYLVQNKNMVLTRDKILETVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DV+I LR K+ + K I TV G GY++++ Sbjct: 184 GYDYYGDTNVVDVYIRYLRSKIDDRFNTK-LIHTVRGVGYIIKD 226 >gi|228919426|ref|ZP_04082791.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840213|gb|EEM85489.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 228 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 90/225 (40%), Positives = 130/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVIEDTTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 228 >gi|227510515|ref|ZP_03940564.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513524|ref|ZP_03943573.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227083397|gb|EEI18709.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227190167|gb|EEI70234.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 228 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K LA +EL LK E ++ V G G++ FD I+LDL L ++ G E Sbjct: 3 RILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR K +TP+ +++ S+ D+V G GADDYI KPF EEL+ARIRA++RR Sbjct: 63 VARRLREKK-NTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ + DL++ +++ V I+LT +EY+++ L + L +++ L Sbjct: 122 ENDQQKSSKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + G +YI+TV G GYV+R Sbjct: 182 TKVWGYDSEVETNVVDVYIRYLRNKI-DRPGENSYIQTVRGTGYVMR 227 >gi|120600316|ref|YP_964890.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|146291755|ref|YP_001182179.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|120560409|gb|ABM26336.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145563445|gb|ABP74380.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] gi|319424991|gb|ADV53065.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 224 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 14/228 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 M++LL+ED+ L + + LK YVTD+ + +E L K ++D +ILD+GL D Sbjct: 1 MKLLLVEDNPMLVNELAKQLKLAG---YVTDITDKALEADYLIKETQYDCVILDIGLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E+L R ISTPV +L+ S +KV G +GADDY+ KPF+ +EL+ARI+A++ Sbjct: 58 NGLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117 Query: 118 RSRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R+ G + + G ++++ +TV+V H LT E++++++ + L+K Sbjct: 118 RAHGRLNTPSKQLTYGGVTLDETEQTVKVADHLYELTAMEFRLLKIFLMSPKKLLSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220 >gi|298242582|ref|ZP_06966389.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297555636|gb|EFH89500.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L S++ L+ + V + GED + + +D +ILD+ L + GF Sbjct: 1 MRILIIEDDPRLGPSLKKGLEGSHHAVDLLADGEDAVFMATSIPYDLVILDILLPGLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ + +E +V+GL GADDY++KPF EL AR+RA++R R Sbjct: 61 EVCRQLREQGKTMPILLLTALGEVEHRVKGLDLGADDYLTKPFAFSELEARVRALLR--R 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G S + + LD +T EV+ I L KEY ++E + L++ M + H+ Sbjct: 119 GGPVSSATLQFMDITLDTRTHEVKRAERLIPLGNKEYALLEFFMRHPHQVLSRSMIVEHV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +DG E +IDV+I LR+KL N N I+T+ G GY L+E Sbjct: 179 WDGDTEHLSNVIDVYIRYLRRKLCN-ENEPNVIQTIRGSGYQLKE 222 >gi|160938310|ref|ZP_02085665.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC BAA-613] gi|158438683|gb|EDP16440.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC BAA-613] Length = 235 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 134/234 (57%), Gaps = 11/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + V GE+ IEL K E+D ++LD+ L G+E Sbjct: 3 RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIELAKKTEYDIVLLDVMLPKYDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R P+ +L+ DK+ GL+ GADDYISKPFN E+ ARI+AI+RRS Sbjct: 63 VCQAIREFS-DMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSGK 121 Query: 120 -----RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R A+S +I GDL ++ +++ V + I+LT KE+ ++ELL N ++E Sbjct: 122 SKRQKREEAESGVIGAGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREA 181 Query: 174 FLNHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L +++ + D +V+ +DV + +LR+K+ + Y+ T WG GY R A Sbjct: 182 LLTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPRYVHTKWGVGYYFRVKA 235 >gi|24380274|ref|NP_722229.1| response regulator GcrR for glucan-binding protein C [Streptococcus mutans UA159] gi|290579753|ref|YP_003484145.1| response regulator GcrR for glucan-binding protein C [Streptococcus mutans NN2025] gi|24378286|gb|AAN59535.1|AE015017_1 response regulator GcrR for glucan-binding protein C [Streptococcus mutans UA159] gi|6174678|dbj|BAA85986.1| gcrR [Streptococcus mutans] gi|254996652|dbj|BAH87253.1| response regulator GcrR for glucan-binding protein C [Streptococcus mutans NN2025] Length = 230 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K LA + L L+ E + V VT G G+E +FD I+LDL L ++ G+EV Sbjct: 5 ILIIEDEKKLAKFVSLELQHEGYEVEVTYDGRSGLERALEKDFDLILLDLMLPEMDGYEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R L++ K +T V I++ SI D V GL GAD YI KPF EEL+AR+RAI RR Sbjct: 65 IRRLQLEK-TTYVIIITARDSIMDIVTGLDRGADGYIVKPFAIEELLARVRAIFRRQDIE 123 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ +++ DL +++ + G I LT +E+ ++ L N +T+E L Sbjct: 124 KAKHSSKNDTTYRDLKLDVHNRAAIRNGETIPLTKREFDLLNALVENINQVMTREELLAR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E E ++DV+I LR K+ + G ++YI+TV G GY++REN Sbjct: 184 VWKYDQEAETNVVDVYIRYLRGKI-DVPGKESYIQTVRGMGYIIREN 229 >gi|152986792|ref|YP_001349246.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150961950|gb|ABR83975.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 132/229 (57%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L + F V + D G DG L E+D I+LD+ L I G+ Sbjct: 1 MRVLIVEDEAKTADYLNRGLTEQGFTVDLADNGIDGRHLALNGEYDVIVLDVMLPGIDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR + TPV +L+ +ED+VRGL+ GADDY+ KPF+ ELVAR++A+ RR Sbjct: 61 GVLRALREQR-QTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGG 119 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + S + DLS++L ++ V G R+ LT KEY ++ +L+ R L+K ++ Sbjct: 120 NHESASQMRVADLSIDLLSRKVFRGGSRLELTAKEYALLCVLAQRSGEILSKTAIAELVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D + + +++V I +LR KL K + T+ G GYVL A E Sbjct: 180 DINFDTDTNVVEVAIKRLRAKLDGPFENK-LLHTIRGMGYVLENRALAE 227 >gi|220920110|ref|YP_002495411.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944716|gb|ACL55108.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 225 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 126/219 (57%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED + + +I L++ V G G + + +D +ILD+ L + GF Sbjct: 1 MRILLVEDTQDVGEAIVARLRTLGHAVDWERDGAMGDAVLEVQPYDLVILDVNLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R + TPV +L+ S ++D+V L GADDY+ KPF+ EL AR+RA++RR Sbjct: 61 AILKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + I G+LS++ A++ V G + LT +E+ +IE+L+ R K L+ L Sbjct: 121 GHADNAIACGNLSLDRAARSASVGGQPLDLTRREWTLIEILAARPGRIFGKAELLDRLST 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EP ++ + +LR+KL+ AG + I T+ G GY Sbjct: 181 FEEEPSENALEQIVARLRRKLAQ-AGAEPEIRTLRGLGY 218 >gi|15598005|ref|NP_251499.1| two-component response regulator, CopR [Pseudomonas aeruginosa PAO1] gi|218891000|ref|YP_002439866.1| two-component response regulator, CopR [Pseudomonas aeruginosa LESB58] gi|254235792|ref|ZP_04929115.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719] gi|254241263|ref|ZP_04934585.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192] gi|9948893|gb|AAG06197.1|AE004708_3 two-component response regulator, CopR [Pseudomonas aeruginosa PAO1] gi|126167723|gb|EAZ53234.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719] gi|126194641|gb|EAZ58704.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192] gi|218771225|emb|CAW26990.1| two-component response regulator, CopR [Pseudomonas aeruginosa LESB58] Length = 226 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 133/225 (59%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L F V ++D G +G +L ++D +ILD+ L G+ Sbjct: 1 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR++R A ++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + + DL ++L + V+ QG RI LT KE+ ++ELL R L K + + ++ Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + + +I+V I +LR K+ + + I TV G GYVL E Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDY-PQRLIHTVRGMGYVLEER 224 >gi|238783257|ref|ZP_04627282.1| Two component heavy metal response transcriptional regulator, winged helix family [Yersinia bercovieri ATCC 43970] gi|238715850|gb|EEQ07837.1| Two component heavy metal response transcriptional regulator, winged helix family [Yersinia bercovieri ATCC 43970] Length = 251 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 134/223 (60%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + I L F V V G DG+ L Y++D I+LD+ L + G+ Sbjct: 26 MRLLLVEDEEKTSSYINRALSELGFTVDVAANGTDGLYLALEYDYDTIVLDVMLPGMDGY 85 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL+ LR +K TPV +LS S++++V+GL+ GADDY+ KPF+ ELVARI+A++RR Sbjct: 86 SVLQGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 144 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S G + + DL ++L A+ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 145 SDGADVTQLHIDDLHLDLLARRVTRGGARLELTAKEFALLSLLARHQGEILSKMMIAEQV 204 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +++V I +LR K+ +A + TV G GYVL Sbjct: 205 WDMNFDSDANVVEVAIKRLRAKM-DAPYPVKLLHTVRGMGYVL 246 >gi|239627534|ref|ZP_04670565.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239517680|gb|EEQ57546.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 133/231 (57%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + V GE+ +EL K E+D ++LD+ L + G+E Sbjct: 3 RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVELAKKTEYDIVLLDVMLPKLDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ DK+ GL+ GADDYISKPFN E+ ARI+AI+RRS Sbjct: 63 VCQAIREFS-DMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSSK 121 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + S+I GDL ++ +++ V + I+LT KE+ ++ELL N ++E Sbjct: 122 NKRLKKEEANNSVIGQGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREA 181 Query: 174 FLNHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L +++ + D +V+ +DV + +LR+K+ + Y+ T WG GY R Sbjct: 182 LLTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYFR 232 >gi|119357020|ref|YP_911664.1| two component transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119354369|gb|ABL65240.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides DSM 266] Length = 222 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ ++ ++ L+ E F V + G+ G+++ E+D +I+D + I G Sbjct: 1 MRILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMAILNEYDLMIVDWMIPGISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R A S P+ L+ ++ED V GL +GA+DYI KPF EEL+ARIR +RR+ Sbjct: 61 EVCRQVRKAGSSVPIIFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I G ++VN V + I LT KE+ ++E L+ K+ T+ + H+ D Sbjct: 121 PESDA-ITAGFVTVNPVTHQVFCRDTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVRD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + IIDV+I LRKKL + +G N I+T+ G GY++RE+ Sbjct: 180 MHFDSDTSIIDVYINFLRKKL-DCSGCGNIIQTIRGVGYIIRES 222 >gi|83594245|ref|YP_427997.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577159|gb|ABC23710.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 227 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 137/228 (60%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALA-HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+IEDDK +A H ++ + ++ + V D G DG+ +D +I+D L ++ G Sbjct: 1 MRILVIEDDKEVAAHLLKGLREAGHVADSVAD-GRDGLFQAAGEAYDLLIVDRMLPNVDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++R LR + + PV ILS + ++D+V+GL++G DDY+ KPF EL+ARI A+ RR+ Sbjct: 60 LTIVRTLRASGKTVPVLILSALGEVDDRVKGLRAGGDDYLVKPFAFAELLARIDALTRRT 119 Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G Q+ + G++ ++L A+ V I L +E++++E L + +T+ M L + Sbjct: 120 AGSDAEQTRLRAGEVEMDLLARRVTRGSRTIDLQPREFRLLEYLMRHADQVVTRTMLLEN 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D +P+ ++DV I +LR+K+ + ++ETV G GYVLR N Sbjct: 180 VWDYHFDPQTNVVDVHISRLRRKMDEGF-AQPFLETVRGAGYVLRTNG 226 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300075473|gb|ADJ64872.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LAH +E +LK F V + GE ++ + +D ++LDL L + G Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR PV IL+ SI++KV L +GADDY+ KPF ELVARI+ +VRR Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I G+L + + + V G + L +E+ ++E+L LR+ T++K + ++ Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +EP I+V+I +LRKKL + I T+ G GY+LR+ Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAA---IMTLRGLGYLLRQ 220 >gi|228915802|ref|ZP_04079379.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843844|gb|EEM88916.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 236 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V + GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACENGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233 >gi|304310969|ref|YP_003810567.1| Probable transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301796702|emb|CBL44914.1| Probable transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 224 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 123/219 (56%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++ED+ L + + L ++V G++G+ Y +D I+DLGL I G Sbjct: 1 MRALIVEDEPHLQEQLAVALGRAGYSVDRASDGKEGLYFGTEYNYDIAIVDLGLPQIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+R R + PV +L+ SS +DKV GL+ GADDY+ KPF EE+VAR A+VRR+ Sbjct: 61 DVIRRWRESNRIFPVMVLTARSSWQDKVAGLEIGADDYVVKPFQMEEVVARANALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G + ++ + K V + + LT EY+++E L + ++K + H+Y Sbjct: 121 GITQSSIRLGPIELDTNKKQVRLHEEPLDLTSYEYRVLEYLMMHPEELISKAVLTEHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + I+VFI +LRKKL K IETV G GY Sbjct: 181 QDFERDSNTIEVFIGRLRKKLDPDNQWKP-IETVRGMGY 218 >gi|262039182|ref|ZP_06012502.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii F0264] gi|261746798|gb|EEY34317.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii F0264] Length = 196 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 120/192 (62%), Gaps = 1/192 (0%) Query: 33 GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92 GE+ +E ++ E+D +ILD+ + I GFEV++ LR +T V +L+ S +DKV+GL Sbjct: 4 GEEALEYLEYGEYDLVILDVMMPKINGFEVVKELRSKGNNTSVLMLTARDSADDKVKGLD 63 Query: 93 SGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTG 152 GADDY+ KPF+ EL ARIRA+VRR G++ + I DL ++ K+V G +I LTG Sbjct: 64 MGADDYLIKPFDFNELSARIRAVVRRKFGNSSNKIEVKDLVLDTTEKSVTRAGKKIDLTG 123 Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212 KEY+++E L KN L+++ + ++ E + IIDV I +RKK+ + GK I Sbjct: 124 KEYEILEYLVQSKNRILSRDQIIERVWGYEYEGDSNIIDVLIKNIRKKI-DIEDGKQIIF 182 Query: 213 TVWGRGYVLREN 224 T G GYV++E+ Sbjct: 183 TKRGMGYVVKED 194 >gi|293603268|ref|ZP_06685698.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292818329|gb|EFF77380.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 223 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MRILL+ED+ L ++E L+S +V DG+ ++ +DA++LD+ L Sbjct: 1 MRILLVEDNLDLGDAVESKLRSAGHSVQWV---RDGVAALRWGLDETWDALVLDINLPGK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF V+R LR A + PV +++ + IEDK+ L GADDY+ KPF+ EL AR+RA++R Sbjct: 58 DGFSVIRELRAAGLEAPVLVMTARAEIEDKIDMLDLGADDYLVKPFDLRELEARLRALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G S G+LS++L ++V + G + L +E++++E+L R T+ KE +N Sbjct: 118 RPAGQTSSTTSYGNLSLDLAGRSVTLAGAPVELGRREFRLLEILVGRIGQTVAKERLMNQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+D D+ + +++ I +LRKKL AG I TV G GY R + Sbjct: 178 LFD-LDDGSLNALELLISRLRKKL---AGASIDIVTVRGVGYQARSH 220 >gi|254563439|ref|YP_003070534.1| phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens DM4] gi|254270717|emb|CAX26722.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens DM4] Length = 221 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A I L+ + + GE + +DA++LDLGL + G Sbjct: 1 MRILVVEDEPRIAADISEGLERAGYVAEIVGDGEAAWFQAETETYDAMVLDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR A ++ PV IL+ ++V G+ +GADDY+ KPF EELVAR+RAI+RR+ Sbjct: 61 GVLRRLRGADVALPVLILTARDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G + ++ + V V G LT EY+++ L R+ + L+HL+ Sbjct: 121 GHASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAFLLHRQGQVVAAGELLDHLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++ + +LR+KL G IET G GY++ Sbjct: 181 SDSDREANALEALLTRLRRKL-----GPGIIETRRGHGYLV 216 >gi|107102351|ref|ZP_01366269.1| hypothetical protein PaerPA_01003413 [Pseudomonas aeruginosa PACS2] Length = 228 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L F V ++D G +G +L ++D +ILD+ L G+ Sbjct: 3 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR++R A ++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 63 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + + DL ++L + V+ QG RI LT KE+ ++ELL R L K + + ++ Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + +I+V I +LR K+ + + I TV G GYVL E Sbjct: 183 DMNFDSDTNVIEVAIRRLRAKVDDDY-PQRLIHTVRGMGYVLEE 225 >gi|148548249|ref|YP_001268351.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148512307|gb|ABQ79167.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 220 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL I L+ E + + G G+ + FD +ILDLGL + G Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLLILDLGLPRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR S PV IL+ +++D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI +S++ + V G + LT KEY ++ L T+E LY Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVHYNGVDVVLTPKEYVLLHELLAHPGKVFTRERLTQLLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +EPE ++V I LRKKL N I TV G GY++ A Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEVKA 220 >gi|240850121|ref|YP_002971514.1| two-component system regulatory protein [Bartonella grahamii as4aup] gi|240267244|gb|ACS50832.1| two-component system regulatory protein [Bartonella grahamii as4aup] Length = 221 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 128/225 (56%), Gaps = 11/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL++EDD+ L H + ++ YV+D DG E L +DA+ILD+GL I Sbjct: 1 MRILIVEDDRNLHHQLAEAVRRAG---YVSDSAFDGEEAYFLGSTESYDAVILDIGLPYI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G V+ R S PV +L+ DKV G+ +GADDY+ KPF+ EE++AR+RA++R Sbjct: 58 DGIRVVEKWRQEGHSMPVLMLTARDRWSDKVHGIDAGADDYVVKPFHLEEVMARLRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ GHA S + G++ ++ V V G I LT E++++ L + +++ H Sbjct: 118 RATGHATSALCCGNVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCDRVISRTELTEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LYD + + ++VF+ +LRKKL G + IET+ G GY +R Sbjct: 178 LYDQDFDKDSNTVEVFVGRLRKKL-----GVDLIETIRGMGYRVR 217 >gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21] gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21] Length = 224 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ +L I LK E ++V + G D +E E+D +I+D+ + ++ G Sbjct: 1 MKILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEYDLLIVDILMPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR ++ PV L+ + EDKV+GL +G DDY+ KPF EL+AR+RA++RRS Sbjct: 61 TLVHTLREKNVTVPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRRSG 120 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G A ++ + DL ++ A TV G I LT KE+ ++E L + L+++ L H Sbjct: 121 GTAVPKNELQLSDLVLSESAHTVTRGGKPIALTPKEFSVLEYLLRNQGIVLSRDKILEHA 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D E ++DV+I LRKK+ + K + TV G GYVL+E Sbjct: 181 WDFSYEGASNMVDVYIKTLRKKIDHDFEPK-LLHTVRGAGYVLKE 224 >gi|83814493|ref|YP_446590.1| PhoP3 response regulator [Salinibacter ruber DSM 13855] gi|83755887|gb|ABC44000.1| PhoP3 response regulator [Salinibacter ruber DSM 13855] Length = 246 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 130/236 (55%), Gaps = 4/236 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGFE 61 +L++EDD L+ S+ L L+SE + V + + GE +E + +D I+LD L D+ GFE Sbjct: 11 LLVVEDDSELSTSLLLYLESEGYEVTLAETGETALEEATRLPGYDLIVLDAKLPDLSGFE 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR R + TPV +L+G+ E K+RG Q GADDY++KPF EELVARI ++RR Sbjct: 71 VLRQSRDDGVRTPVLMLTGLGDHEHKMRGFQVGADDYLTKPFETEELVARIDVLLRREAE 130 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G L V+L+ V G + LT EY+++ L R+ T T+E L ++ Sbjct: 131 ATDETGTFRVGGLRVDLEEDDVSRDGEPVDLTDLEYKLLAYLLRRRGRTATREQILRDVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 D E E + ID + LR + A + I++V+G GY L E A+ T ET Sbjct: 191 DLPTEVETRTIDRHVNALRDVMDGEAEDEWPIQSVYGIGYKL-EGAERTTGSEQET 245 >gi|171057189|ref|YP_001789538.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774634|gb|ACB32773.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 223 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 124/221 (56%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD+ LA + L+S + V G + +EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRSLRSAGYAVDHVGSGSEADAALAAHEFDMLILDLGLPKLHGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR S PV IL+ SIE +V+GL GADDY++KPF+ +EL AR+RA+ RR Sbjct: 61 EVLKKLRGRGSSVPVLILTAADSIEQRVKGLDFGADDYMAKPFSLQELEARVRALTRRGL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G LS + + + I L+ +E ++E+L R ++K+ + L + Sbjct: 121 GSASAIIRHGPLSFDATGRVAYINDLMIDLSARELSLLEVLLQRAGRLVSKDQLVERLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V+I +LRKK+ G I TV G GY L Sbjct: 181 WGEEVSNNAIEVYIHRLRKKIEQ---GPIRIATVRGLGYCL 218 >gi|311103838|ref|YP_003976691.1| response regulator 1 [Achromobacter xylosoxidans A8] gi|310758527|gb|ADP13976.1| response regulator 1 [Achromobacter xylosoxidans A8] Length = 223 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 133/229 (58%), Gaps = 10/229 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MRILL+ED+ L ++E L+ +V DG+ ++ +DA++LD+ L Sbjct: 1 MRILLVEDNLDLGDAVESKLRFAGHSVQWV---RDGVAALRWGLDETWDALVLDINLPGK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF V+R LR A + PV +++ S IEDK+ L GADDY+ KPF+ EL AR+RA++R Sbjct: 58 DGFTVIRELRAAGLEAPVLVMTARSEIEDKIDMLDLGADDYLVKPFDLRELEARLRALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G SL V G+LS++L + V V G + L +E++++E+L + T+ KE +N Sbjct: 118 RPAGQTSSLTVYGNLSLDLANRNVSVAGAPLELGRREFRLLEILLGKLGQTVAKERLMNQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+D D+ + +++ I +LRKKL AG I TV G GY R + + Sbjct: 178 LFD-LDDGTLNALELLISRLRKKL---AGASIDIVTVRGVGYQARSHEQ 222 >gi|331701554|ref|YP_004398513.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329128897|gb|AEB73450.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 228 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K LA +EL LK E ++ V G G++ FD I+LDL L ++ G E Sbjct: 3 RILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR K +TP+ +++ S+ D+V G GADDYI KPF EEL+ARIRA++RR Sbjct: 63 VARRLREKK-NTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + + DL++ +++ V I+LT +EY+++ L + L +++ L Sbjct: 122 ENDQQKNNKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + G +YI+TV G GYV+R Sbjct: 182 TKVWGYDSEVETNVVDVYIRYLRNKI-DRPGENSYIQTVRGTGYVMR 227 >gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 129/231 (55%), Gaps = 7/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L + +DAI+LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQMVEALTDAGYAVDRAYDGEEGHFLGETEPYDAIVLDIGLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R PV IL+ DKV+G +GADDY++KPF+ EE++ARIRA++RRS Sbjct: 61 SVLEAWRREGRKMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G + ++ + V V G ++ LT E++++ L +++ + HLYD Sbjct: 121 GHAASELTCGPVMLDTRSGRVTVDGRQVKLTSHEHRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDET 229 + + I+VF+ +LRKKL I+TV G GY+L E + ET Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLD-----VEVIQTVRGLGYLLVPPEAPRQET 226 >gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 235 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 134/224 (59%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD+A+A+ ++ L+ E + V + G++G+E K Y+F ++D+ L ++ GF Sbjct: 4 KLLIVEDDEAIANILKEHLEKEGYEVNWSSTGKEGLEDFKKYKFALAMVDIMLPEMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R P+ ILS + DKV+GL+ GADDYI+KPF+ E+ AR+ A +RR R Sbjct: 64 LCKNIRWINEDIPIMILSAKQTDMDKVKGLKLGADDYITKPFSLTEVSARVEAHLRRYRK 123 Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++LI G DL + + K V + G +T KE+++++L++ N +KE Sbjct: 124 MDKTLISNGTLKFKKDLIIIPEEKKVTINGQETQMTLKEFELLQLMAQNPNKVFSKEELY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +H++D D + V I +LR+K+ +++ +I+TVWG GY Sbjct: 184 HHVWDSIDLDGNNTVTVHIKELREKIGDSSKNPIFIQTVWGTGY 227 >gi|163853512|ref|YP_001641555.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218532370|ref|YP_002423186.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240140930|ref|YP_002965410.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens AM1] gi|163665117|gb|ABY32484.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218524673|gb|ACK85258.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|240010907|gb|ACS42133.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens AM1] Length = 221 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A I L+ + + GE + +DA++LDLGL + G Sbjct: 1 MRILVVEDEPRIAADISEGLERAGYVAEIVGDGEAAWFRAETETYDAMVLDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR A ++ PV IL+ ++V G+ +GADDY+ KPF EELVAR+RAI+RR+ Sbjct: 61 GVLRRLRGADVALPVLILTARDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G + ++ + V V G LT EY+++ L R+ + L+HL+ Sbjct: 121 GHASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAFLLHRQGQVVAAGELLDHLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++ + +LR+KL G IET G GY++ Sbjct: 181 SDSDREANALEALLTRLRRKL-----GPGIIETRRGHGYLV 216 >gi|116050809|ref|YP_790370.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296388712|ref|ZP_06878187.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|115586030|gb|ABJ12045.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 226 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 133/225 (59%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L F V ++D G +G +L ++D +ILD+ L G+ Sbjct: 1 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR++R A ++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + + DL ++L + V+ QG RI LT KE+ ++ELL R L K + + ++ Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + + +I+V I +LR K+ + + I TV G GYVL E Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDY-PQRLIHTVRGMGYVLEER 224 >gi|302878086|ref|YP_003846650.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] gi|302580875|gb|ADL54886.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] Length = 221 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 127/224 (56%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG--IELCKFYE-FDAIILDLGLTDI 57 MR+LL+EDD L I L F V D +DG EL E +DA++LDLGL + Sbjct: 1 MRVLLVEDDPLLGDGIRAGLMQAGFAV---DWAKDGREAELAVSGEPYDAVVLDLGLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 PG ++LR R +K P+ IL+ S+ D+V GL +GADDY+ KPF+ EL AR+RA+VR Sbjct: 58 PGMDMLRRTRTSKNPVPILILTARDSVADRVAGLDAGADDYLIKPFDLGELQARLRALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R++ + +I G L ++ ++V + G + L+ +E+ ++ L L L+K Sbjct: 118 RAKSQIEPVIAHGALYLDPAGRSVTLAGRSVELSAREFAILHELLLNAGRVLSKAQLEEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY +E E ++VF+ LR+KL+ + I TV G GY++ Sbjct: 178 LYGWGEEIESNAVEVFVHHLRRKLA-----PDLIRTVRGVGYMI 216 >gi|76788272|ref|YP_330651.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77405138|ref|ZP_00782237.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77410895|ref|ZP_00787252.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|76563329|gb|ABA45913.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77163113|gb|EAO74067.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77176281|gb|EAO79051.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 223 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L SI +LK ++++V GE+ ++ E+D IILD+ + + GF Sbjct: 1 MKILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ LR + +L+ ++ED++ GL GADDY+ KPF EL+ARIRA++RR+ Sbjct: 61 TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTN 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S I D+++NL K V + I LT KEY+++E L+ ++ L++ H++ Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNNNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + E IIDV I LR+KL N G + I+T G GYV+ Sbjct: 181 DYDYDGESNIIDVLIKNLRRKLDNNRDG-SLIKTKRGLGYVI 221 >gi|226954227|ref|ZP_03824691.1| two-component response regulator [Acinetobacter sp. ATCC 27244] gi|294650125|ref|ZP_06727506.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC 19194] gi|226835034|gb|EEH67417.1| two-component response regulator [Acinetobacter sp. ATCC 27244] gi|292823975|gb|EFF82797.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC 19194] Length = 219 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 129/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD + A SI+ L+ + ++V + G+ I + +++D ++LD GL G Sbjct: 1 MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVEQHQYDCVLLDRGLPKASGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+++R + TPV ++ I D+V GL GA+DY+ KPFN EEL AR+R+ +R+ + Sbjct: 61 QILKSIRQRNLKTPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARVRSQLRQHQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + DL ++ AKT+ ++LT KE+Q++ L + + T+E LY Sbjct: 121 VDAGQYLKFADLKLDPQAKTLSQAEQTVNLTAKEFQILYKLMQKPDHIFTREQLEESLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE E I+VFI ++RKK+ G YI+TV G GY + + Sbjct: 181 WGDEIESNAIEVFIYQIRKKI-----GGQYIKTVRGLGYRMHQ 218 >gi|145631584|ref|ZP_01787350.1| transcriptional regulatory protein [Haemophilus influenzae R3021] gi|144982784|gb|EDJ90310.1| transcriptional regulatory protein [Haemophilus influenzae R3021] Length = 221 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFIDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 61 EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S+I + ++ + ++V + I LT +EY+++ELL L K+ L++ L Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKLSS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL GK +I TV G GY L Sbjct: 181 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216 >gi|90417639|ref|ZP_01225551.1| two-component response regulator, heavy metal response [Aurantimonas manganoxydans SI85-9A1] gi|90337311|gb|EAS50962.1| two-component response regulator, heavy metal response [Aurantimonas manganoxydans SI85-9A1] Length = 225 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 131/222 (59%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD++ A + LK E + G G+EL ++DA+++D L + G Sbjct: 1 MKVLVIEDDRSTADYVTGGLKEEGHDPDHAASGPIGLELACTRDYDAMVIDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++RALR + TPV L+ +S ++D+V GL++GADDY+ KPF EL+AR+ A+ RRS Sbjct: 61 SIVRALRSSGRDTPVIFLTSVSGLDDRVEGLEAGADDYLVKPFAFSELMARLNALARRSP 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ GDL +NL A+TV +G + L +E++++E + + LT+ M L ++ Sbjct: 121 MRREEAVLKVGDLEMNLIARTVRREGQSVDLQPREFRLLEYMMRNRGRVLTRTMLLERVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P +++ + +LR K+ I+T+ G GYVL Sbjct: 181 DFHFDPRTNVVETHVSRLRGKVDRPF-STEMIKTIRGSGYVL 221 >gi|266619280|ref|ZP_06112215.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM 13479] gi|288869197|gb|EFD01496.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM 13479] Length = 227 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 131/230 (56%), Gaps = 3/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ + ++ L+ + V G D +E C E+D ++LDL L + G Sbjct: 1 MRLLIVEDEEDMREALCYGLRKRGYAVDAAGDGADAVEQCGINEYDLVVLDLNLPGLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R + V ILS S + DK+RGL SGA DY++KPF+ EEL ARIR ++RRS Sbjct: 61 EVLKHIRSMEKPAKVLILSARSELTDKIRGLDSGASDYLTKPFHFEELEARIRMLLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G L ++ + KT QG + + +E+ ++E L + ++ E L H++D Sbjct: 121 IQTEAALTRGGLCLDSNLKTASFQGRPLEFSMREFSILEYLMIHMGRPVSAEELLEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +P + V+I +R+KL A + I ++ G GY++ + ++E C Sbjct: 181 SEADPFSNQVKVYISVIRRKL-QAVTDEEIIRSIRGAGYLI--DKEEEEC 227 >gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma proteobacterium HTCC2143] gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma proteobacterium HTCC2143] Length = 232 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 122/219 (55%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + + ++ +N+ V V G +G+ Y +D I+DLGL +I G Sbjct: 1 MRILIVEDEDHIRQQLRTAMRRQNYAVDVAKDGREGLYFATEYPYDLAIIDLGLPEISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR P+ IL+ S +DKV GL++GADDY+ KPF EE+ ARI A++RRS Sbjct: 61 TLIKELRENDKQFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G L++N +K + + LT EY +E L+ ++K HLY Sbjct: 121 GSCKPSMSFGPLTINTTSKVALIGNTEMTLTSYEYNTLEYLAHNAGKVVSKTELTEHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + +I+VFI +LRKK+ + I TV G+GY Sbjct: 181 QDFERDSNVIEVFIGRLRKKI-DPDNQLKAIVTVRGQGY 218 >gi|16119733|ref|NP_396439.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15162323|gb|AAK90880.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 221 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+ EDDK +A S+ + L + F ++ GED + FDA+ILDLGL + G Sbjct: 1 MRVLVAEDDKRIAQSLSVALAAAGFVTELSANGEDAWFRGETEAFDAVILDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R +TPV IL+ ++V G++SGADDY+ KPF EE+VAR+RA+VRR+ Sbjct: 61 TILKRWRRDGRATPVLILTARGDWSERVEGIESGADDYVVKPFRMEEVVARVRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I G +++ K V + G + L+ +EY+++ ++ R +++ HLY Sbjct: 121 GFSSPIITIGQYTLDTRLKQVSMGGLPVALSPQEYRLLAFMAHRPGKVVSQLEITEHLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D+ ++V + +LR++L G + I T G GY+L +A Sbjct: 181 QDDDRLSNAVEVLVGRLRRRL-----GADIIITRRGLGYLLGGHA 220 >gi|188583782|ref|YP_001927227.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179347280|gb|ACB82692.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 224 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A I L+ + + GE + +DA++LDLGL + G Sbjct: 1 MRILVVEDEPRIAADIREGLERAGYVAEIVGDGEAAWFRAETETYDAMVLDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR A ++ PV IL+ ++V G+ +GADDY+ KPF EELVAR+RAI+RR+ Sbjct: 61 GVLRRLRGADVALPVLILTARDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G + ++ + V V G LT EY+++ L R+ + L+HL+ Sbjct: 121 GHASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAFLLHRQGQVVAAGELLDHLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++ + +LR+KL G IET G GY++ Sbjct: 181 SDSDREANALEALLTRLRRKL-----GPGIIETRRGHGYLV 216 >gi|68250311|ref|YP_249423.1| transcriptional regulatory protein [Haemophilus influenzae 86-028NP] gi|68058510|gb|AAX88763.1| transcriptional regulatory protein QseB [Haemophilus influenzae 86-028NP] Length = 221 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + + +++ L F V + TD G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTD-GKTGMAALTSASYDAVVLDLTLPKLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 60 LDVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ S+I + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 120 YGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDCVLSRSSIEEKLS 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E +DV I LR+KL GK +I TV G GY L + K Sbjct: 180 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYALGQVEK 221 >gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family protein [Pseudonocardia sp. P1] Length = 246 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L+ + + L+ E + V G + + + DAI+LD+ L D+ GF Sbjct: 20 IRVLVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHAREFRPDAIVLDVMLPDVDGF 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVLR +R PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR Sbjct: 80 EVLRRVRAGTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRAG 139 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S +V GDL ++ DA V I LT E++++ L L+K L+ Sbjct: 140 MAAAQRSSELVVGDLVLDEDAHEVRRADRPIELTATEFELLRYLMRNPRRVLSKAQILDR 199 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + ++++++ LRKK+ AG I TV G GYVLR A+ Sbjct: 200 VWNYDFGGQSNVVELYVSYLRKKID--AGYAPMIHTVRGAGYVLRPAAE 246 >gi|313107944|ref|ZP_07794113.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|310880615|gb|EFQ39209.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 228 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L F V ++D G +G +L ++D +ILD+ L G+ Sbjct: 3 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR++R A ++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 63 QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + + DL ++L + V+ QG RI LT KE+ ++ELL R L K + + ++ Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + +I+V I +LR K+ + + I TV G GYVL E Sbjct: 183 DMNFDSDTNVIEVAIRRLRAKVDDDY-PQRLIHTVRGMGYVLEE 225 >gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 224 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 131/224 (58%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ LA +EL LK E + V + G G+E +D I+LDL L + G EV Sbjct: 4 ILIIEDEENLADFLELELKYEGYKVDIQFDGRKGLEAALETNYDLILLDLMLPGLNGIEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R LR K +TP+ +L+ SI D+V GL SGADDY+ KPF EEL+AR+R I RR Sbjct: 64 CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEQI 122 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H SL DL + ++++T+ I LT KE++++ + N LT+++ L+ + Sbjct: 123 ENKHVSSLTFK-DLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E I+DV++ LR KL ++ + YI+TV G GY+++ Sbjct: 182 WGYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224 >gi|307152831|ref|YP_003888215.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] gi|306983059|gb|ADN14940.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 633 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 126/230 (54%), Gaps = 1/230 (0%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 +EDD + L + ++NV V G+ G++L + Y +D +LD+ + + G V + Sbjct: 1 MEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGISVCQQ 60 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 LR + P+ +L+ S D++ GL +GADDYI KP N E L+ARIRA++RR S Sbjct: 61 LRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKNASLSS 120 Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185 +I G+L +NL V + IHLT KEY ++EL + + + L L+D + P Sbjct: 121 VIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWDIGESP 180 Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 + + I LR+KL N AG + IETV+G GY LR+ + +T L T Sbjct: 181 GEETVSTHIKCLRQKLKN-AGVSDPIETVYGLGYRLRKADEIDTSPNLST 229 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 6/121 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYV-TDLG-EDGIELCKFYEFDAIILDLGLTDIP-- 58 IL+I+DD ALA + + ++ N N+ + TDL I L K IILDL Sbjct: 389 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAI--IILDLNFDSASED 446 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF +L L ++ + P+ I +G S+ D+++ + GA ++ KP +++ + I+ Sbjct: 447 GFTLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKPLAAHQILKTVTDILHE 506 Query: 119 S 119 + Sbjct: 507 N 507 >gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] Length = 239 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 135/232 (58%), Gaps = 11/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++++ ++ L+ + V G G++L K FD IILDL L ++ G + Sbjct: 4 RLLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQTFDLIILDLMLPEMDGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR +K+ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR+RAI+RR G Sbjct: 64 VCKQLRQSKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRV-G 122 Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 HAQ S + G++ + D V ++G + LT KE++++ L+ K LT+ Sbjct: 123 HAQNNHEDNSRSTSTLSFGNVEIYPDNYEVYLKGQPLELTPKEFELLLYLANHKGRVLTR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + LN +++ + +I+DV I LR+K+ YI+T+ G GY L E Sbjct: 183 DQLLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEE 234 >gi|241114102|ref|YP_002973577.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|240868675|gb|ACS66333.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 228 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG L ++D +ILD+ L D+ G+ Sbjct: 1 MKLLVVEDESKTGEYLQQGLSEAGFVVDLARNGMDGRHLAMTGDYDLLILDVMLPDLEGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L ALR A+++ PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R+++R R Sbjct: 61 QILHALRSAELAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRSLLR--R 118 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A SL I DL ++L + G RI LT KE+ ++ELL+ R L + + + Sbjct: 119 GSAPSLAERIQVADLVLDLTRRRASRGGQRIALTSKEFSLLELLARRHGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +IDV I +LR K+ + K I TV G GYVL Sbjct: 179 VWDMNFDSDTNVIDVAIRRLRAKIDDNFEPK-LIHTVRGMGYVL 221 >gi|330889414|gb|EGH22075.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. mori str. 301020] Length = 225 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M++L++ED+ L H + L V V + GE ++ +F D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAGEALYQVTQF-NHDLAVIDLGLPGIGG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 60 LDLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G QS I G L ++L+ K + + LT EY+++E L L + KE + LY Sbjct: 120 SGFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL + K IETV G GY+ E Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 222 >gi|332284350|ref|YP_004416261.1| two component heavy metal response transcriptional regulator, winged helix family protein [Pusillimonas sp. T7-7] gi|330428303|gb|AEC19637.1| two component heavy metal response transcriptional regulator, winged helix family protein [Pusillimonas sp. T7-7] Length = 227 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V +T G DG L +D IILD+ L D+ G+ Sbjct: 1 MKLLVVEDEIKTGDYVRQGLIESGFVVDLTRTGLDGHHLALTGSYDLIILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ALR AK STPV L+ S+ED+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 RIVQALRDAKSSTPVLFLTARDSVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A Q + DL +++ + + Q RI+LT KE+ ++ELL R+ L + + + ++ Sbjct: 121 APAFQDQLQVADLVLDIPRRRAQRQNVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I TV G GY+L Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDYEPK-LIHTVRGMGYML 221 >gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 223 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEDGLFLASQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223 >gi|159029954|emb|CAO90333.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+K L +E +L E ++V + D G G+EL + +D +ILD L G Sbjct: 1 MRILIVDDEKELTEPLEQILAQEGYDVDIADNGRTGLELAQENNYDLLILDWMLPQQSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 ++ + LR +TPV L+ +I+D+V GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 QICQYLRDQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + DL ++ + + G I L+ KE Q++ L LT E H Sbjct: 121 NFEASNSSKLKCADLELDSENQVAYRHGRTISLSAKEIQLLTLFMTYPGQLLTHEQIYQH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++P ++ + LR+K+ A G I TV+G+GY EN Sbjct: 181 LWSEGEQPNSNVVPALMRLLRRKIE-ADGETPLINTVYGKGYRFGEN 226 >gi|66046740|ref|YP_236581.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257447|gb|AAY38543.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330973569|gb|EGH73635.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 220 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+A+ I + L +E + + + G + + FD ++LDLGL + G Sbjct: 1 MRLLLVEDDRAIGQGIRVALNTEGYTLDWLEDGLSALHALRSEPFDLLLLDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR ++ PV IL+ D++ GL +GADDY+ KPF+ +EL AR+RA++RRS+ Sbjct: 61 DLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ L+ +S++ ++ V QG + +T EYQ++ L +R +T+E N LY Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D+ E ++V I LRKKLS I TV G GY+L A Sbjct: 181 WQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLELKA 220 >gi|150392423|ref|YP_001322472.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149952285|gb|ABR50813.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 225 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 130/223 (58%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ L+ I L+ + V GE+ +E + YE+D IILDL + I G Sbjct: 1 MKILLIEDEEMLSAIIAKGLRKVGYAVDTVFDGEEALEYYEIYEYDIIILDLNIPKIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R + ILS + +++++ GL GA+DY+ KPF+ EL ARIR ++RR+ Sbjct: 61 NVLRTIRKKDTDQKILILSARTKVDERILGLDEGANDYLIKPFDFGELEARIRNLLRRNF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I+ + V+++AK V ++LT KEY + E L L KN T++ E + H++D Sbjct: 121 SGTPTTIMLDNFIVDINAKRVICDNDVLNLTRKEYNIFEYLILNKNKTISAEQLVEHIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P + I L+KKLSN + + I+T+ G+GY++ E Sbjct: 181 SEFDPFSNTLRYHIHTLKKKLSNFS-NEEVIKTIRGQGYIIEE 222 >gi|162421230|ref|YP_001606897.1| DNA-binding heavy metal response regulator [Yersinia pestis Angola] gi|162354045|gb|ABX87993.1| DNA-binding heavy metal response regulator [Yersinia pestis Angola] Length = 230 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 133/231 (57%), Gaps = 4/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + I L F V V G DG+ L Y++D I+LD+ L + G+ Sbjct: 1 MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR +K TPV +LS S++++V+GL+ GADDY+ KPF+ ELVARI+A++RR Sbjct: 61 SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G S + DL ++L A+ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 RDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +D + + +++V I +LR K+ K + TV G GYVL +T Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKIDTPYPVK-LLHTVRGMGYVLETRPDRQT 229 >gi|307545835|ref|YP_003898314.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307217859|emb|CBV43129.1| two component transcriptional regulator, winged helix family [Halomonas elongata DSM 2581] Length = 223 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD+ LA ++ L + T G + L + +DA+ILDLGL D G Sbjct: 1 MKVLLVEDDEPLAEALSAALAEAGVLIEATASGTEADFLVQTERYDAVILDLGLPDGDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L R A I PV +L+ DK G +GADDY++KPF E++ R+RA+VRRS Sbjct: 61 RWLAQWREAGIDLPVLVLTARERWADKAAGFSAGADDYVTKPFETAEVLFRLRALVRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ GDL+++ +V + G I LT +E +++ L +++ H+YD Sbjct: 121 GHAHPILRVGDLALDTHTGSVTLAGRPISLTSQESRLLAYLVHTAPRVVSRAELAEHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 EP+ +IDV I +LR+KL G IET+ G+GY L Sbjct: 181 RDHEPDSNVIDVQISRLRRKL-----GSQRIETLRGQGYRL 216 >gi|171912348|ref|ZP_02927818.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Verrucomicrobium spinosum DSM 4136] Length = 231 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 118/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L IED L ++ L V E+G +L + +DA+ILD+ L G Sbjct: 1 MRLLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLPGQSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R ++ TPV +L+ + S+ED+VRGL +GADDY+ KPF EL AR+ A+VRR Sbjct: 61 ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S I G L ++ A+TV G+ + LT +E+ +++ L+ ++E LY Sbjct: 121 GKPDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D P +D + LR+KLS G I T G GY+L Sbjct: 181 ETDSPLSNAVDTAVYSLRRKLS-PPGVPQLIHTRRGLGYLL 220 >gi|311695828|gb|ADP98701.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 223 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 122/219 (55%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD+ALA + L + V V + G L +D +ILDLGL D G Sbjct: 1 MKVLLVEDDRALAEGLAAALSNAGLLVEVAEDGRSADFLVSTERYDVVILDLGLPDGSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L R I PV IL+ DK G +GADDY++KPF E++ R+RA++RR+ Sbjct: 61 QWLAGWRERGIDLPVLILTARERWSDKAAGFSAGADDYVTKPFETAEVLFRLRALMRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA +I G+++++ A V G + LT +E++++ L +++ H+YD Sbjct: 121 GHAHPMITVGEIALDTHAGQVTRAGMPVALTAQEFRLLSRLIHAAPRVVSRTELSEHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G EP+ +IDV + +LR+KL G IETV G+GY Sbjct: 181 GDQEPDSNVIDVQVSRLRRKL-----GGESIETVRGQGY 214 >gi|259503600|ref|ZP_05746502.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|259168424|gb|EEW52919.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] Length = 228 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 138/228 (60%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ LA+ + L LK E ++ V G G+E +FD I+LDL L ++ G E Sbjct: 3 RILIIEDEENLANFVNLELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K TP+ I++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 VARRVRELK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S+ H Q+ + DL++ + + V I+LT +EY+++ +L N ++++ Sbjct: 122 EDGNSKEH-QTTVNYKDLTIEKENRIVRRGDEVINLTKREYELLLILMENINVVMSRKEL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + E ++DV+I LR K+ + G K+YI+TV G GYV+R Sbjct: 181 LSKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227 >gi|225628688|ref|ZP_03786722.1| two component response regulator [Brucella ceti str. Cudo] gi|256158058|ref|ZP_05455976.1| DNA-binding response regulator [Brucella ceti M490/95/1] gi|256252987|ref|ZP_05458523.1| DNA-binding response regulator [Brucella ceti B1/94] gi|260167009|ref|ZP_05753820.1| two component response regulator [Brucella sp. F5/99] gi|261220080|ref|ZP_05934361.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261756397|ref|ZP_06000106.1| response regulator receiver [Brucella sp. F5/99] gi|265996572|ref|ZP_06109129.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|225616534|gb|EEH13582.1| two component response regulator [Brucella ceti str. Cudo] gi|260918664|gb|EEX85317.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261736381|gb|EEY24377.1| response regulator receiver [Brucella sp. F5/99] gi|262550869|gb|EEZ07030.1| two component transcriptional regulator [Brucella ceti M490/95/1] Length = 225 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI+LIEDD L ++ + +E V + + +D ++LDL L D G Sbjct: 1 MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHNYMESARYDLVLLDLMLPDGQGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR LR STPV IL+ + I D+++GL +GADDY++KPF+ EL AR+ A+ RR Sbjct: 61 SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ LI G L ++L AK+V G + LT +E+ ++E TL+K HLY Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E ++V + +LRKKL +A IETV G GY L Sbjct: 181 FDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216 >gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271] Length = 229 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K ++V G I LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229 >gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662] gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662] gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 228 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 136/228 (59%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I+ L+ + V GE+ + L K ++D I+LD+ L + G+E Sbjct: 3 KVLVVDDEKLIVKGIKFSLEQDEMEVDCAYDGEEALGLAKENQYDIILLDVMLPKLTGYE 62 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +A+R + ST P+ +L+ DK+ GL+ GADDY++KPFN E+ ARI+AI+RRS Sbjct: 63 VCQAIR--EFSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAILRRSV 120 Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 HA +I + L ++ D++ V + G ++LT KE+ ++ELL N ++E L Sbjct: 121 SHAAPAETPKVIESRGLKIDCDSRRVHINGKEVNLTAKEFDLLELLVFHPNKVYSREDLL 180 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ G D P + + +DV I +LR+K+ G +Y+ T WG GY + Sbjct: 181 NTVW-GYDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYFQ 227 >gi|322436892|ref|YP_004219104.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321164619|gb|ADW70324.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 233 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ ++ ++ LKS + V EDG+ L D I+LDLGL + G E Sbjct: 8 RILVVEDERKISEAVTAGLKSAGYEVLAARTVEDGLFLLHSQHPDMIVLDLGLPGMSGME 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR I PV IL+ +S++D+V L GADD++ KPF+ EL AR+RAI RR R Sbjct: 68 MLRQLRAMGIMIPVLILTSNNSLDDRVAALDLGADDFLLKPFSTAELNARMRAISRRGRP 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-- 179 + + DL +NL+ +TV G ++ LT +E+ +I + T+++EM ++ Sbjct: 128 TQVAQLSVADLEINLETRTVVRGGMQLELTAREFDLIVYFVGNRGRTVSREMLARDVWHE 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 R P +IDV I +LR+KL + K + TV G G++L E Sbjct: 188 TSRFTPIDNVIDVQITRLRRKLDDPFPQK-LLRTVRGVGFILGE 230 >gi|145298120|ref|YP_001140961.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142850892|gb|ABO89213.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 229 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L + L+S + V G + + K EF A+ILDL L DI G Sbjct: 1 MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR PV IL+ +++D+V GL +G+DDY+ KPF +EL AR+RA+VRRS+ Sbjct: 61 SLLRKLRREGQVLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+++ GD+ ++ +++ V +G + LT EY++++ L + L+K+ LY Sbjct: 121 GQAQAVLEYGDILIHPESQQVTYRGEPVKLTPHEYKLLQELVTQSGRVLSKDQLQQSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E ++V I LRKK + + I + G GY++ + Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYS-----DLIRNIRGVGYIVPQ 218 >gi|254253937|ref|ZP_04947254.1| hypothetical protein BDAG_03222 [Burkholderia dolosa AUO158] gi|124898582|gb|EAY70425.1| hypothetical protein BDAG_03222 [Burkholderia dolosa AUO158] Length = 224 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPLLAQSLTDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G L+ + ++ + G + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I++++ +LR+KL N I T+ G GY+L A Sbjct: 181 LDESVNADAIEIYVYRLRRKLENTGVS---IVTLRGLGYLLEAKA 222 >gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01] gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01] Length = 224 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 134/225 (59%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59 IL++ED+K +A IEL L++E Y T++ DGI L +F E + +ILDL L + G Sbjct: 6 ILIVEDEKDIARFIELELQAEG---YRTEVAYDGITGLSRFREVNPNLVILDLMLPVMDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV + +R + P+ IL+ IEDKV GL +GADDY+ KPF+ EEL+AR+RA +RR Sbjct: 63 IEVAKRIRKTS-NVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRV 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL +NL+ + V G RI L+ KE++++ELL+ ++ ++ Sbjct: 122 SPAITGEIRVADLIINLEGREVFRSGRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G + ++DV+I LRKKL AAG + I TV G GYVLRE+ Sbjct: 182 PGY-QGGSNVVDVYIGYLRKKLE-AAGERRLIHTVRGVGYVLRED 224 >gi|56696508|ref|YP_166865.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3] gi|56678245|gb|AAV94911.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3] Length = 226 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + E F V G +G+ FDA++LD L + G Sbjct: 4 RVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHATDGGFDAMVLDRMLPGLDGLA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++++R A ++TPV +L+ MS+++++V+GL++GADDY+ KPF+ +EL+AR+ A++RR + Sbjct: 64 LIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRPQD 123 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ ++ DL ++L + V G I LT +E+Q++E RKN +T+ M L ++D Sbjct: 124 TQEATVLACRDLEMDLMRRKVTRAGREITLTPREFQILEFFLRRKNRVITRTMLLEGVWD 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P I+DV I KLR+++ A I TV G GY++ + Sbjct: 184 YHFDPNTNIVDVHISKLRRQIDEGA-EVPLITTVRGAGYMISDG 226 >gi|297565541|ref|YP_003684513.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849990|gb|ADH63005.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 224 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD +AH ++L L F V G G+ + D +ILDLGL D+ G E Sbjct: 3 RILLIEDDPEIAHLLQLELGDAGFEVDWAPGGMSGLVRLREAPPDLVILDLGLPDLDGGE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +RV P+ +L+ S+E KV L GADDYI KPF+ EL+ARI+ +R G Sbjct: 63 VARRIRVGA-EVPIIVLTAADSVERKVTLLSGGADDYIVKPFHPAELLARIQVQLRHREG 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q + G+L V+L + V G + L+ KE++++ LL R ++ HL+ Sbjct: 122 GEQ--VTIGELEVHLSKRQVFYDGQEVRLSPKEFELLSLLCTRPGKVFSRTEIEEHLWGR 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + ++DV + LR KL +G Y+ TV G GY LR+ K+ Sbjct: 180 SLERDSNVVDVHVANLRSKLRE-SGAYGYLRTVRGVGYALRQRDKE 224 >gi|114569487|ref|YP_756167.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339949|gb|ABI65229.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 225 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++EDD L + L+ + V GEDG + +D ++LDLGL + G Sbjct: 1 MRALVVEDDPDLNRQLGRALEDAGYAVDAAVDGEDGHFMGDTEPYDVVVLDLGLPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ +KV G +GADDY++KPF+ EEL+AR+RA+ RR+ Sbjct: 61 TVLERWRQAGRDFPVLILTARDRWSEKVAGFDAGADDYLTKPFHTEELLARMRALTRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + I G LS++ V + G + +T E++M+ L+ ++ +++ + H+YD Sbjct: 121 GHTTATIECGGLSIDTRGARVFIDGAPVKVTSHEFRMLSYLAHHQDRVISRTELVEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ +LRKK+ G + IETV G GY L Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GTDRIETVRGLGYRL 216 >gi|120596934|ref|YP_961508.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|120557027|gb|ABM22954.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] Length = 231 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 74/199 (37%), Positives = 121/199 (60%), Gaps = 1/199 (0%) Query: 24 NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83 ++++ V GE+G+ +DA I+D+GL + G ++R++R + P+ IL+ S Sbjct: 24 HYSIDVASDGEEGLFQALECNYDAAIIDVGLPKLDGISLIRSVRQKERDFPILILTARDS 83 Query: 84 IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143 +DKV GL +GADDY++KPF+ +ELVAR++A++RRS G A L+ G S+N + + Sbjct: 84 WQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSAGKASPLVYNGPFSLNTSSLEIRK 143 Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 I+L+G EY++ E L L +K + H+YD + + +I+VFI +LRKKL + Sbjct: 144 GDELINLSGSEYKLFEFLMLHPGEVKSKTVLTEHIYDQDFDLDSNVIEVFIRRLRKKL-D 202 Query: 204 AAGGKNYIETVWGRGYVLR 222 N IET+ G+GY L+ Sbjct: 203 PDNQYNLIETLRGQGYRLK 221 >gi|58039296|ref|YP_191260.1| two component response regulator [Gluconobacter oxydans 621H] gi|58001710|gb|AAW60604.1| Two component response regulator [Gluconobacter oxydans 621H] Length = 226 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 133/227 (58%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 MRILL+EDD + + L+ V D G+DG+ L +D +ILD L I G Sbjct: 1 MRILLVEDDPTVRAFVLKGLREAGHVVDEADNGKDGLFLAVSENYDVVILDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L LR K +TPV +LS ++ ++++V GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 LRILETLRGQKNATPVLLLSALADVDERVAGLKAGGDDYMTKPFAFSELLARVEALGRRG 120 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + Q+ +V GDL ++L ++TV+ G +I L +E++++E L +T+ M L Sbjct: 121 RPESAPQTRLVVGDLEMDLLSRTVKRGGEKIDLQPREFRLLEFLIRHAGQVVTRTMLLER 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P+ +IDV + +LR+K+ K I T+ GY+LR + Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPF-DKPMIHTIRNAGYILRAD 226 >gi|330957398|gb|EGH57658.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 225 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L E IILD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENEHAVIILDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ ++D++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH I DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQITIADLWIDLISRKATRGGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219 >gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3] gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3] Length = 229 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229 >gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273] Length = 229 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ AL SI +L+ E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNAALLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDY+ KPF EL ARIRA++RRS Sbjct: 66 EVIQKIRDEKIETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K +V G I LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDAQVDGQAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229 >gi|163794790|ref|ZP_02188760.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [alpha proteobacterium BAL199] gi|159180063|gb|EDP64588.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [alpha proteobacterium BAL199] Length = 229 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD A +E + + V T G +G+ L ++DA++LD L + G Sbjct: 4 KILIVEDDIETAAYMERGFVEQGYAVDRTADGREGLFLATGQDYDAVVLDRMLPGLDGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+A+R A + TPV ILS M +++++VRGL++G+DDY+ KPF EL ARI A++RRS Sbjct: 64 VLKAVRAAGVQTPVLILSAMGALDERVRGLRAGSDDYLVKPFAFVELHARIDALIRRSAA 123 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S +V DL ++L ++ V G I L +E+QM+E L +T+ M L + Sbjct: 124 GTEAPPSRLVVADLELDLLSRKVTRAGRPIPLQQREFQMLEYLMRHAGRVVTRTMLLEGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P+ +IDV I +LR+K+ I TV G GY+L Sbjct: 184 WNYHFDPQTNVIDVHISRLRQKVDKDFDSP-LIHTVRGSGYML 225 >gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 229 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 131/222 (59%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + +E+ D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAASGPEALEVFDREGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R+LR + PV +L+ S DK+ GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRSLR-QRSKVPVIMLTAKDSEIDKIVGLELGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+ S++ G + +++D V V+G ++ L KE++++E+L LT+ ++ Sbjct: 121 DAEEPSSSVLAAGPVRMDVDRHVVTVRGEKVQLPLKEFELLEVLLRNAGRVLTRGQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV I +LR K+ YI TV G GY Sbjct: 181 VWGADYVGDTKTLDVHIKRLRAKIEPDPSKPRYILTVRGLGY 222 >gi|83719158|ref|YP_440599.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|167617392|ref|ZP_02386023.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|83652983|gb|ABC37046.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 225 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 125/222 (56%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E F V GE + K +DA++LD+ L + G Sbjct: 1 MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GDL + + + L +E+ ++E L L++ T++K ++ +Y Sbjct: 121 GVGATQLACGDLVYLFATREFQCGSVPLALRRREHAILETLMLQQGKTVSKARLMDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DEP ID++I +LRK LS G I T+ G GY+LR Sbjct: 181 LDDEPSADAIDIYIHRLRKHLS---GSLAQIITLRGLGYILR 219 >gi|184155774|ref|YP_001844114.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|227515634|ref|ZP_03945683.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|260663510|ref|ZP_05864400.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|183227118|dbj|BAG27634.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|227086064|gb|EEI21376.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|260552051|gb|EEX25104.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 228 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 135/227 (59%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ LA +EL LK + + V G G++ +FD I+LDL L ++ G E Sbjct: 3 RILIIEDEENLARFVELELKHDGYETDVELDGRQGLDAALNQDFDVILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K TP+ I++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 VARRVREVK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ + DL++ + + V I+LT +EY+++ +L N ++++ L Sbjct: 122 EGDANSVHQTTVTYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + E ++DV+I LR K+ + G K+YI+TV G GYV+R Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227 >gi|125623751|ref|YP_001032234.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris MG1363] gi|8177554|gb|AAF73970.1| putative response regulator Rra [Lactococcus lactis subsp. cremoris MG1363] gi|124492559|emb|CAL97502.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris MG1363] gi|300070520|gb|ADJ59920.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris NZ9000] Length = 230 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 133/228 (58%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + + D G GIE ++D I+LDL L ++ GFE Sbjct: 5 KILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGIEEATSKDYDLILLDLMLPELDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 V R LR K TP+ +++ S D+V GL GADDYI+KPF EEL+AR+RA RR Sbjct: 65 VARRLRKEK-DTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123 Query: 121 GHAQSLIVTG---DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT--TLTKEMFL 175 GHA DL ++ +TV I LT +EY + LL+L +N +T+E + Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDL--LLTLMQNVGDVVTREHLV 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + E ++DV+I LR K+ + G +YI+TV G GYV+RE Sbjct: 182 SQVWGYEEGTETNVVDVYIRYLRNKI-DVEGQDSYIQTVRGLGYVMRE 228 >gi|72161734|ref|YP_289391.1| response regulator receiver [Thermobifida fusca YX] gi|71915466|gb|AAZ55368.1| response regulator receiver [Thermobifida fusca YX] Length = 219 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +A + L + F V D I+ FD ++LDLGL D GF Sbjct: 3 RILIVEDEDRIASFVRKGLNANGFTSTVVDRAGAAIDYALTGNFDLMVLDLGLPDADGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR P+ IL+ S+ D V GL++GADDY++KPF EEL+ARIR +R + Sbjct: 63 VLRRLREEGSRLPIIILTARDSVRDTVTGLETGADDYMTKPFRFEELLARIRLRMRSAHN 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ GDL+++L + + LT +E+ ++EL L+++ L+H++ Sbjct: 123 AETTVLHAGDLALDLRTRRASTPEATVDLTAREFALLELFLRHPGQVLSRQQILSHVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DVFI LRKK+ G + IET+ G GY L Sbjct: 183 DYDPGSNVVDVFIRALRKKI-----GAHRIETLRGMGYRL 217 >gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563] Length = 235 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 127/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+K LA +EL LK E + + G G+E + +D I+LDL L +I G E Sbjct: 8 RILIVEDEKNLARFVELELKHEGYETELAKDGRIGLEKAQEGNWDLILLDLMLPEINGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR P+ I++ S+ D+V G GADDYI KPF EEL+ARIRA++RR Sbjct: 68 VCRRLRPTS-DVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIDI 126 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ + DLSV + + V I LT +EY+++ +L N L + L Sbjct: 127 EEEQQHRKQTKVTFRDLSVEKENRIVRRGEEIIDLTKREYELLVMLMENVNVVLPRTELL 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ E E ++DV+I LR K+ + G YI+TV G GYV+R Sbjct: 187 NKVWGYTTEVETNVVDVYIRYLRNKI-DVDGQPGYIQTVRGTGYVMR 232 >gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 226 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 123/226 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD+ ++ +I L +++ V V G++ EL + +D I+LD+ L + G Sbjct: 1 MKILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDVFSYDLILLDVMLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR TP+ +++ ++ED+V GL GADDY+ KPF +EL AR+RA++RR Sbjct: 61 TLCRKLRSGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++ + V Q I L+ KEY ++E ++ + L HL+ Sbjct: 121 SSLPPVLKWGDLCLDPSSCKVYYQEQLIPLSPKEYTLLEFFLRHEHRVFNRAQLLEHLWP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 PE + I LR+KL + IETV+G GY L+E + Sbjct: 181 FERLPEEATVKAHIRSLRQKLDAVGAPSDVIETVYGLGYRLKERPE 226 >gi|332638553|ref|ZP_08417416.1| DNA-binding response regulator [Weissella cibaria KACC 11862] Length = 229 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 134/227 (59%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ LA +EL L+ E + +V D G G++ ++D I+LDL L ++ G EV Sbjct: 4 VLVIEDEVNLARFVELELQHEGYETHVEDNGRGGLQAALDNDYDLILLDLMLPELSGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R LR K +TP+ +++ S+ D+V GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 64 ARRLREVK-NTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRRINIE 122 Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + H+ QS++ DL+V + + I+LT +EY+++ +L N ++E L Sbjct: 123 TEEHSTHQSVVRYRDLTVEKENRIARRGNDIINLTKREYELLLILMENINVVQSREELLK 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ +YI+TV G GYV+R+ Sbjct: 183 KVWGYDSQIETNVVDVYIRYLRNKIDQPDSRASYIQTVRGTGYVMRQ 229 >gi|229845243|ref|ZP_04465376.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1] gi|229847329|ref|ZP_04467431.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1] gi|229809754|gb|EEP45478.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1] gi|229811838|gb|EEP47534.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1] Length = 221 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 129/227 (56%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + + +++ L F V + TD G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTD-GKTGMVALTSAPYDAVVLDLTLPKLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 60 LDVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GH S+I + ++ + + V + I LT +EY+++EL L K+ L++ L Sbjct: 120 YGHHHSVIEQSGVKLDQNQRFVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKLS 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E +DV I LR+KL GK +I TV G GY L + K Sbjct: 180 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYALGQVEK 221 >gi|315924256|ref|ZP_07920480.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622417|gb|EFV02374.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 223 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ +L+ ++ +LK V V + G G ++ +D I+LD+ L ++ G Sbjct: 1 MRVLLVEDEVSLSAALAKLLKKNKIEVDVANDGASGKQMADRDIYDVIVLDIMLPEVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL+ +R PV +L+ S +DKV+GL GADDY+ KPF +EL+ARIRA+ RR+ Sbjct: 61 TVLKHIRQTGKKVPVLLLTAKDSTQDKVKGLNMGADDYVVKPFETDELIARIRALGRRAG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +A ++I DL ++ + + + ++ LT KE QM+EL L T+ K+ L ++ Sbjct: 121 EQYADNVIQYADLVLDTTSGELSIGTKKVRLTAKESQMLELFILNPEQTIAKKALLERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++++ LRKKLS G K I+T+ G GYVL+ + Sbjct: 181 GNDGKAAENSVEIYVHYLRKKLS---GAKVTIKTLRGMGYVLKRD 222 >gi|319424630|gb|ADV52704.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 219 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L + L + V D G DG L + F+A+ILDLGL PG Sbjct: 1 MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLSEEENFEAVILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R ++ PV IL+ + ++V GL++GADDY+ KPF+ EEL+AR+ ++RR Sbjct: 61 QVLSQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +++ +S+++D + V V G I LT EY+++ L + + ++K +Y Sbjct: 121 GRADNVLQHAGVSLDVDKQAVTNVDGAVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+V++ +LR++L GK+YIET G+GY L+E Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKE 219 >gi|46397856|sp|Q01473|RCAC_FREDI RecName: Full=Protein rcaC gi|387603|gb|AAA24892.1| putative [Fremyella diplosiphon Fd33] Length = 651 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 123/228 (53%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD L + L + ++ V V GE G +E+D IILD+ L ++ G Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + R + P+ +L+ +I KV+GL +GADDY+ KPF+ EL+ARIRA++RR Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+ GDL +N V G ++LT EY ++ELL + E L+ L+ Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D P + + +LR KL A ++I T+ GRGY L+ + +E Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKAPSTEE 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 2/124 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++DD+ ++ +LK F V + + + DA++LD+ + I GFE Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR PV LS ++ + + G DDY+ KP EL RI ++R Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQRV 646 Query: 120 RGHA 123 R A Sbjct: 647 RAWA 650 >gi|186475237|ref|YP_001856707.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184191696|gb|ACC69661.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 220 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+ E F V GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRGEGFAVDWVQDGESALNAADGQPYDLVLLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRTRGHQLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++S I G+L+++ + V + G + L+ +E+ ++ L R L+K +Y Sbjct: 121 GRSESTIRHGNLTLDPASHQVTLDGAPVALSAREFALLAALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G I V G GY++ + A Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GAELIRNVRGLGYMIAKEA 220 >gi|308084106|gb|ADO13169.1| QseB [Edwardsiella tarda 080813] Length = 219 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LLIEDD+ + I+ L F++ + TD G G+ + +DA+ILDL L I G Sbjct: 1 MRVLLIEDDRLIGDGIKAGLSKMGFSLDWFTD-GLQGMTALESAPYDAVILDLSLPGIDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+LR R A + PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR+ Sbjct: 60 LEILRRWREAGHAEPVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIRRN 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G AQ+L+ G +S++ + T + G + L KE+ ++ELL L + + LY Sbjct: 120 HGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LR+KL G ++I TV G GY L Sbjct: 180 SWDDDVSSNAVEVHIHHLRRKL-----GSHFIRTVHGVGYTL 216 >gi|239815367|ref|YP_002944277.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239801944|gb|ACS19011.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 219 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + ++ +L++E + V +V D GE + ++D ++LDLG+ G Sbjct: 1 MRLLLLEDDVMIGEAVLDLLRAEQYAVDWVKD-GEAAESALRTQQYDLVLLDLGVPRRDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVLR+LR K PV I + S++ ++ GL +GADDY+ KP++ +EL+ARIRA++RR+ Sbjct: 60 LEVLRSLRARKQRMPVLIATARDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+ + +S+N + V V+G + L+ +E+ ++E L R L++ LY Sbjct: 120 AGRAEPVYEHMGVSINPATREVAVEGQPVVLSAREWAVLEPLIARPGMVLSRAQLEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +DE ++V++ LRKKL G I V G GY++ Sbjct: 180 SWKDEISSNAVEVYVHGLRKKL-----GAELIRNVRGVGYMV 216 >gi|152983575|ref|YP_001347907.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150958733|gb|ABR80758.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 223 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D +D IILDLGL PG Sbjct: 1 MRLLLVEDHVPLADELLASLGRQGYAVDWLADGRDAALQGASEPYDLIILDLGLPGRPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RR+ Sbjct: 61 EILREWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A QS + LS++ + V + G + LT E++++ L L+K HLY Sbjct: 121 GLANQSQLEAAGLSLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG E + +I+V + LR+KL G+ IET G+GY Sbjct: 181 DGETERDSNVIEVHVNHLRRKL-----GREVIETRRGQGY 215 >gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 229 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L SI L+ + + V + D G + +E+ + +D I+LDL L I G Sbjct: 1 MKILVVEDERELLESIGEGLRIDGYYVDLLDNGTEALEMAQIEPYDLILLDLNLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR T V ILS S++ D++ GL +GADDY+ KPF EL AR+R ++RR Sbjct: 61 ELLRTLRAQHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRREY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GDL + + + +G I LT KE ++E L K ++ E L+H +D Sbjct: 121 TQGETFLDCGDLRFDTTTRRLSAKGVEISLTKKETAILEYLMRHKGRVVSSEELLSHAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P + V IC LRKKL + G + I G GY L E Sbjct: 181 SSVDPFSNSVRVHICSLRKKLRSVLGC-DPISNKIGEGYYLTE 222 >gi|323525907|ref|YP_004228060.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382909|gb|ADX55000.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 219 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 128/222 (57%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + IE L+ F V + D + G+ L + ++LDLGL + G Sbjct: 1 MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLAL-DTTSYALVVLDLGLPRVSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+LR LR A PV +L+ ++ D+V GL++GADDY+ KPF+ EL+AR RA++RR+ Sbjct: 60 MELLRRLRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + +I +LSVN A+ VEV G R+ LT +E+ ++ L + ++ LY Sbjct: 120 QGRSVDVIRYRELSVNPAAQAVEVAGKRVSLTSREWAILMQLLTNQGIPQSRSRLEESLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E E I+V + LRKKL G + I TV GYV+ Sbjct: 180 GWQEEIESNAIEVHVSNLRKKL-----GAHLIRTVRNIGYVV 216 >gi|260777188|ref|ZP_05886082.1| two-component system response regulator QseB [Vibrio coralliilyticus ATCC BAA-450] gi|260606854|gb|EEX33128.1| two-component system response regulator QseB [Vibrio coralliilyticus ATCC BAA-450] Length = 218 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L ++I L ++ GE + + F +ILD+ L I G Sbjct: 1 MRVLLVEDDPMLGNAITASLARHHYTADWVTSGESALHALQTDSFLLVILDISLPGISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR TPV ILS + D+V GL GADDY+ KPF EEL+AR+ A++RRS Sbjct: 61 KVLKELRSKGDKTPVLILSARDELNDRVYGLNHGADDYLVKPFQLEELLARMGALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A IV GD+SV++++ V V G I+LT E++++ L L+K L +++ Sbjct: 121 GMADDTIVVGDVSVSVNSHKVAVAGECINLTPNEFKILLYLVTNAGRVLSKTQILQNMHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+V I LRKK+ K IE + G GY+++ Sbjct: 181 WDESAGLNSIEVHIHNLRKKMP-----KGTIENIRGVGYIIQH 218 >gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] Length = 234 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 134/228 (58%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ ++ L++E++ V G++ ++ + FD IILDL L + G + Sbjct: 3 KILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R KI TP+ IL+ + DK+ GL+ GADDY++KPF+ E++ARI+AI RRS+ Sbjct: 63 VTCKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQS 122 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ I G ++++ + GHR+ LT KE++++ + R TL+++ Sbjct: 123 QPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDAL 182 Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ G D P E +++D+ + LR K+ +Y++TV G GY + Sbjct: 183 LNGVW-GFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQM 229 >gi|15807318|ref|NP_296048.1| response regulator [Deinococcus radiodurans R1] gi|6460139|gb|AAF11874.1|AE002064_5 response regulator [Deinococcus radiodurans R1] Length = 220 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A L+ + V G +G+E EF ++LD+ L + GF Sbjct: 1 MRLLLVEDDPRIAEPTAAALREAGYAVTWAQTGPEGLEAAMLGEFPLVVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ LR A++ +P+ L+ + D+V+GL G D Y+ KPF EL+A++RA+ RR R Sbjct: 61 EIAGQLREAEVDSPILFLTARGEVSDRVQGLDLGGDAYLVKPFAMPELLAQLRALTRRER 120 Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + + LD A+TV G + +TG+EY+++ L+L LT+E L+ + Sbjct: 121 GQSAPRVSFAGGRGGLDTVARTVTWDGQEVAVTGREYELLSALALAPERWLTREELLDRV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E +I+DV++ LR+KL+ A I + GRGY Sbjct: 181 WGPEFGGEARIVDVYVRYLRRKLAPEA-----ISSERGRGY 216 >gi|330828633|ref|YP_004391585.1| two-component system response regulator [Aeromonas veronii B565] gi|328803769|gb|AEB48968.1| Two-component system response regulator [Aeromonas veronii B565] Length = 228 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L ++ L+ + V G + K EF A+ILDL L DI G Sbjct: 1 MRILLVEDDVMLGDGMQDALRHSGYTVDWLQQGLPALAALKSDEFAALILDLNLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR PV IL+ +++D+V GL +G+DDY+ KPF +EL AR+RA+VRRS+ Sbjct: 61 SLLRKLRREGHQLPVLILTARDALDDRVVGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+++ GD+ + +++ V QG + LT EY++++ L + L+K+ LY Sbjct: 121 GQAQAVLEYGDILIYPESQQVTYQGEAVKLTPHEYKLLQELISQSGRVLSKDQLQQSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E ++V I LRKK + + I + G GY++ + Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYS-----DLIRNIRGVGYIIPQ 218 >gi|283787078|ref|YP_003366943.1| two-component response regulator [Citrobacter rodentium ICC168] gi|282950532|emb|CBG90197.1| two-component response regulator [Citrobacter rodentium ICC168] Length = 224 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 128/236 (54%), Gaps = 19/236 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEQCLESGHYSLVVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKISGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + GDL++N+ + V G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHHNQGESELTVGDLTLNMGRRQVWKAGEELVLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L A +E+ Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATATEES 224 >gi|74316154|ref|YP_313894.1| two component transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055649|gb|AAZ96089.1| Two component Transcriptional regulator, Winged helix family [Thiobacillus denitrificans ATCC 25259] Length = 220 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 121/220 (55%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L ++ L F V GE + F A++LDLGL G Sbjct: 1 MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR TPV +L+ +EDKVRGL GADDY+ KPF+ +E+ AR+RA++RR+ Sbjct: 61 SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + L+ GD+ ++ A++V +G + LTG+E+ ++ +L LT+ M LY Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + ++V + LR+KL N + I TV G GY+ Sbjct: 181 WDEGVGSNALEVHVHHLRRKLGN-----DVIRTVRGVGYM 215 >gi|312962580|ref|ZP_07777070.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6] gi|311283160|gb|EFQ61751.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6] Length = 225 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + D I+DLGL + G Sbjct: 1 MKLLVVEDEALLRHHLFTRLTDSGHVVEAVANAEEALYQTGQFNHDLAIIDLGLPGMGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRTQAKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARMNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS IV G L ++L+ K + + LT EY+++E L + K+ + LY Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLDEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DE + +I+V + +LR+KL +G K I+TV G GY+ E + Sbjct: 181 DDDERDPNVIEVLVGRLRRKLEGPSGFKP-IDTVRGLGYLFNERCR 225 >gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 271 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 133/225 (59%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + L+ E ++V G+ + L + D I+LD+ L DI G Sbjct: 23 LRVLVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLARETVPDVIVLDIMLGDIDGL 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + PV L+ S+ED+V GL +G DDY++KPF+ EE+VAR+R ++RR+ Sbjct: 83 EVLRRIRQQQEGVPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRAG 142 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A ++ +V GDL+++ D+ V+ G IHLT E++++ L ++K L+ Sbjct: 143 ASAARDEARLVVGDLTLDEDSHEVDRAGQEIHLTATEFELLRYLMRNARRVMSKSQILDR 202 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + I++++I LR+K+ AG + I T+ G GYVL+ Sbjct: 203 VWQYDFGGQANIVELYISYLRRKID--AGREPMIHTLRGVGYVLK 245 >gi|167565398|ref|ZP_02358314.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis EO147] gi|167572502|ref|ZP_02365376.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis C6786] Length = 223 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPILAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G L+ + ++ + G + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + I++++ +LRKKL G I T+ G GY+L + Sbjct: 181 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLLEAQPR 223 >gi|289674391|ref|ZP_06495281.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] Length = 220 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 127/228 (55%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+LL+EDD+A+ I + L +E Y D EDG+ + L L +P Sbjct: 1 MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++LR LR ++ PV IL+ D++ GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGLDLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G AQ L+ +S++ ++ V +G + +T EYQ++ L +R +T+E N Sbjct: 118 RSQGRAQPLLEHAGISLDPTSQQVSFKGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNT 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LY +D+ E ++V I LRKKLS I TV G GY+L A Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLELKA 220 >gi|222106554|ref|YP_002547345.1| two component response regulator [Agrobacterium vitis S4] gi|221737733|gb|ACM38629.1| two component response regulator [Agrobacterium vitis S4] Length = 218 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L S++ + + V + GE G+ + ++ +ILD+ L GF Sbjct: 1 MRILVVEDDVILGSSLKKAFEKHAYGVDLMRDGESGLLAIQDNDYAVVILDVNLPKASGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR + PV +L+ + SI +V GL GADDY+ KPF+ +EL+AR+RA+ RR Sbjct: 61 EVVRTLRASGNKVPVLLLTALDSIRSRVEGLDEGADDYLVKPFDLDELLARVRALARRYE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++LI G++ ++ A G +H+ GKE+ +++LL R +TK LYD Sbjct: 121 GRTETLIRCGNVELDPSAMIARQNGTPLHVAGKEFHLLKLLMERAGRYVTKSDIEYALYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E I+V I LRKKL G ++I+++ G GY++ Sbjct: 181 ISAMVESNTIEVTIYSLRKKL-----GADFIKSIRGVGYMV 216 >gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLAMQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R +I TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 65 EVIQKIRDERIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V+G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTKQTIRYKGIELFGKDKDVQVEGQDIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEK 228 >gi|187933189|ref|YP_001885183.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum B str. Eklund 17B] gi|187721342|gb|ACD22563.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum B str. Eklund 17B] Length = 235 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDDKA+ + I + L++EN+ +V + GE I Y D +ILDLGL D+ G E Sbjct: 5 QILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +++ +R + P+ ++S S DK+ L GADDY++KPF+ EEL+AR+R +RR Sbjct: 65 IIKRIRTWS-NVPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSLRRINY 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +G +L + GDL ++ A+ V ++ +HLT EY++I LL+ LT L Sbjct: 124 VNSGQGKNSNLFINGDLKIDYAARCVFIKDEEVHLTPIEYRLICLLAKNVGRVLTHNFIL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + VF+ LRKK+ YI+T G GY Sbjct: 184 KEVWGNTLPNDTPSLRVFMATLRKKIEEKPSKPKYIQTHIGIGY 227 >gi|117618787|ref|YP_857713.1| DNA-binding response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560194|gb|ABK37142.1| DNA-binding response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 229 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L + L+S + V G + + K EF A+ILDL L DI G Sbjct: 1 MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR + PV IL+ +++D+V GL +G+DDY+ KPF +EL AR+RA+VRRS+ Sbjct: 61 SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+++ G+L + +++ V +G + LT EY++++ L + L+K+ LY Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E ++V I LRKK + + I + G GY++ + Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYS-----DLIRNIRGVGYIVPQ 218 >gi|126668876|ref|ZP_01739820.1| DNA-binding response regulator [Marinobacter sp. ELB17] gi|126626661|gb|EAZ97314.1| DNA-binding response regulator [Marinobacter sp. ELB17] Length = 221 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ LA + L+ F+V VT ++ + L ++ A +LDLGL D G Sbjct: 1 MRLLLVEDDRLLAEGLASQLEKAGFSVDVTGTAKEAMLLGVQEDYRAAVLDLGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR R + V IL+ +DKV GL++GADDY+ KPF EEL+AR+ AIVRRS Sbjct: 61 DVLRKWRQDNANFAVLILTARGDWQDKVSGLKAGADDYLGKPFQAEELIARLNAIVRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S + G ++ + + +++ H LTG E++++ L R +KE + LY Sbjct: 121 GRVLSSVKAGHFELDENRQCLKIDNGPEHSLTGTEFRLLRCLMSRPGHIFSKEQLMEQLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + P +I+ +I +LRK + G IET G+GY+ + Sbjct: 181 NLTESPNENVIEAYIRRLRKLV-----GPETIETRRGQGYLFND 219 >gi|167031851|ref|YP_001667082.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|166858339|gb|ABY96746.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 224 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 129/225 (57%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + F V + G DG+ L ++ I+LD+ L + G+ Sbjct: 1 MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ +ED++ GL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSS 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + DL ++L A+ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 SHEPLQVQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +++V I +LR KL K + T+ G GYVL A Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPFDNK-LLHTIRGMGYVLENRA 223 >gi|209964019|ref|YP_002296934.1| two-component transcriptional regulator, putative [Rhodospirillum centenum SW] gi|209957485|gb|ACI98121.1| two-component transcriptional regulator, putative [Rhodospirillum centenum SW] Length = 225 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + LK V G+DG+ L +DA+++D L G Sbjct: 1 MKILVIEDDAGTAEYLTKGLKEAGHVVDHAATGKDGLFLAASESYDALVVDRMLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR P +LS +SS+ED+V+GL++GADDY+ KPF EL+AR+ A+ RR+R Sbjct: 61 SVLEVLRATGNGIPALVLSALSSVEDRVKGLRAGADDYLPKPFAFSELLARLDALERRAR 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + DL ++L A++V G + L +E+ ++E L +T+ M L ++ Sbjct: 121 GSGPVTRLQVSDLEMDLLARSVSRAGRPVDLLPREFLLLEFLMRNAGHVVTRTMLLERVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR+K+ I TV G GYVLR Sbjct: 181 DYHFDPQTNVIDVHIARLRQKIDKDHPAP-LIHTVRGAGYVLR 222 >gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 222 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 8/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A +E LK+ F + V + G D ++ +FD +ILDL L GF+ Sbjct: 3 RILIAEDEPRIAAFLEKGLKANGFTITVANDGLDALQKALGSQFDLLILDLNLPHQDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L+ LR P+ IL+ IEDKV GL+ GADDY++KPF EL+AR+RA +R Sbjct: 63 ILKQLRGQGEKVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLRHQTL 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + ++ GD+ ++L + +V I L+ KE+Q++E L +++E L+ + Sbjct: 123 SPVKEERVLTAGDILLDLYTRQAQVADCPIKLSAKEFQLLETLMRHPEQVMSREQLLDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P I+DV++ LRKKL G N IETV G GY L Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKL-----GGNRIETVRGMGYRL 220 >gi|186471275|ref|YP_001862593.1| two component heavy metal response transcriptional regulator [Burkholderia phymatum STM815] gi|184197584|gb|ACC75547.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 228 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 134/228 (58%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L + + V V GE+G+ L +++D I+LD+ L G Sbjct: 1 MKLLIVEDEFKVVDYLRRGLTEQGWVVDVALDGEEGLHLASEFDYDIIVLDVMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ALR+ K STPV +L+ + D+VRGL+ GADDY++KPF+ ELV R+ A+ RR+R Sbjct: 61 SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT KE+Q++ +L+ R+ L+K M ++D Sbjct: 120 VQESTLICVGDLYVDLIGRRATRGGVRLDLTAKEFQLLSVLARRQGDILSKAMITELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAK 226 + +++ I +LR KL K + T+ G GYVL RE A+ Sbjct: 180 VNFDSHTNVVETAIKRLRAKLDGPFPTK-LLHTMRGMGYVLEVREEAE 226 >gi|330816594|ref|YP_004360299.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327368987|gb|AEA60343.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 221 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + +I L V + G L FD ++LD+ L + GF Sbjct: 1 MRILVVEDDAEIGEAIGSRLTRLGHAVDLECDGAAASSLLGVESFDLVVLDVMLPSMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR + +TPV +++ S+I+D+V GL GADDY+ KPF+ EL AR++A++RR+ Sbjct: 61 AILRRLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G LS++ ++ E+ G + L+ +E+ ++E+L+ R +K+ LN L+ Sbjct: 121 GHASDVLRFGALSIDRSSRLAELDGQPLPLSRQEFALLEILASRPQRVFSKDELLNQLFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 EP ++ ++ ++R+KL G I T G GY Sbjct: 181 FGREPSANAVEQYVTRVRRKLQ---GSDVEIRTARGMGY 216 >gi|284052047|ref|ZP_06382257.1| two-component response regulator [Arthrospira platensis str. Paraca] gi|291566535|dbj|BAI88807.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 230 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 8/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A +E L++ F + + G+D ++ FD +ILDLGL D GF+ Sbjct: 3 RILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLDQAGGQNFDLLILDLGLPDRDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR + P+ IL+ + DKV GL++GADDY++KPF EL+AR+RA +R G Sbjct: 63 ILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQTG 122 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + T ++ +NL + V+V + L+ KE+ ++E L++E L+ + Sbjct: 123 KPADDNKTLSTANVCLNLYTREVQVADRTVQLSAKEFLLLETFLRHPEQVLSREQLLDQV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P I+DV++ LRKKL G + IETV G GY L Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKL-----GSDRIETVRGMGYRL 220 >gi|168334754|ref|ZP_02692882.1| hypothetical protein Epulo_07020 [Epulopiscium sp. 'N.t. morphotype B'] Length = 222 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 132/223 (59%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+K LA + ML+ N++V V G ++ + +D +ILDL + + G Sbjct: 1 MRILICEDEKQLADILVAMLQYNNYSVDVVGDGVSAVDYIETGNYDGVILDLMMPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R A +S PV ILS S IEDK+ GL GA+DY++KPF+ EL+ARIRA+ R++ Sbjct: 61 EVLKKIRTAGMSVPVIILSAKSQIEDKIVGLDCGANDYLAKPFDAGELLARIRAMTRKAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G+ ++N+ + V +I L KE+Q++E+L RK+ ++ + ++ Sbjct: 121 QN-NIFLMMGNATLNVANFELVVADGKIKLPNKEFQILEMLMSRKDAVVSVDKLAERIWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++ I V+I LRKKL A I+ V G GY + E Sbjct: 180 YENEVDITTIWVYISNLRKKLV-ALSATVQIKVVRGVGYRMEE 221 >gi|188590123|ref|YP_001920314.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum E3 str. Alaska E43] gi|251780101|ref|ZP_04823021.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500404|gb|ACD53540.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum E3 str. Alaska E43] gi|243084416|gb|EES50306.1| KDP operon transcriptional regulatory protein KdpE [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 235 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDDKA+ + I + L++EN+ +V + GE I Y D +ILDLGL D+ G E Sbjct: 5 QILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +++ +R + P+ ++S S DK+ L GADDY++KPF+ EEL+AR+R +RR Sbjct: 65 IIKKIRTWS-NIPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSLRRINY 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +G +L + GDL ++ A+ V ++ IHLT EY++I LL+ LT L Sbjct: 124 VNGGQGENSNLFINGDLKLDYAARCVFIKDEEIHLTPIEYRLICLLAKNVGRVLTHNFIL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + VF+ LRKK+ YI+T G GY Sbjct: 184 KEVWGNTLPNDTPSLRVFMATLRKKIEEKPSKPKYIQTHIGIGY 227 >gi|167957496|ref|ZP_02544570.1| two component transcriptional regulator, winged helix family protein [candidate division TM7 single-cell isolate TM7c] Length = 224 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIP- 58 MRIL++ED+K LA +I LK+E + + + +G + +DA+I+D + D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G ++L+ LR ISTP +L+ + K+ GL +GADDY++KPF +EL+AR+RAI+RR Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ G L ++ +TVE +I LT KEY +++ L TL+KE + H+ Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++ +I LRKK+ K YI+TV G GY L E Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVK-YIKTVRGIGYRLEE 224 >gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 228 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 135/227 (59%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ L++ + L L+ E + V + G +G++ ++DAI+LDL L ++ G E Sbjct: 3 RILIIEDEDNLSNFVSLELQHEGYETKVCENGREGLDTALNEDWDAILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR +K STP+ +++ S+ D+V GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 63 VCRRLRQSK-STPIIMMTARDSVIDRVSGLDHGADDYVVKPFAIEELLARLRAVLRRVDF 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ + DL++ + + V I LT +EY+++ L N L +++ L Sbjct: 122 ENDNGTTKQTTVTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDVLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + E ++DV+I LR K+ + G +YI+TV G GYV+R Sbjct: 182 KKVWGYESQIETNVVDVYIRYLRNKI-DRPGEDSYIQTVRGTGYVMR 227 >gi|87310230|ref|ZP_01092361.1| DNA-binding response regulator [Blastopirellula marina DSM 3645] gi|87286979|gb|EAQ78882.1| DNA-binding response regulator [Blastopirellula marina DSM 3645] Length = 234 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED++ L S+ L T GE G+E + +FDAI+LDL L I G Sbjct: 12 MHILVVEDEQLLGKSLSRGLTEAGHECTWTRSGEKGLEYARTQQFDAILLDLMLPGIGGL 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR I TP+ IL+ + S++D+V+GL GADDY+ KPF EL+AR+ A+ RR+ Sbjct: 72 EVVRTLRDEGIGTPLLILTALGSVDDRVQGLDHGADDYMVKPFAFPELLARLNAMWRRAS 131 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L+++L ++ V I L+ E+ ++ELL ++++M HL+ Sbjct: 132 PRPALNYEAGPLALDLGSRKVTRSSKEIDLSPSEFSILELLMRHAGQIVSRKMLNEHLWG 191 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +IDV I LR+K+ + I TV GRGYVLR Sbjct: 192 QDWNGMTNVIDVHINHLRQKVDRGF-DEPLIHTVRGRGYVLR 232 >gi|330718114|ref|ZP_08312714.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 228 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 136/222 (61%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIEDD LA SI L+ + +V V + G DG + +D +I DL L G Sbjct: 5 IKILLIEDDVNLADSIVGFLQDFS-DVKVVEDGLDGEFEAQEVPYDLVISDLMLPGQDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR +I TPV IL+ SS++DK+ G GADDY++KPF +EEL+ R++A++RRS Sbjct: 64 TIIKNLREKEIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRSG 123 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + I GD+ +NL+ + V+V G + L GKE+ ++ L+ KN +T+E + ++ Sbjct: 124 VFSEDNTIEVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIITREQIFDRVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++++++ LR+KL A G N I+T+ G++L Sbjct: 184 GIDSDTTINVVNIYLNNLRRKLE-AVGQDNLIKTLRNIGFIL 224 >gi|163749364|ref|ZP_02156613.1| DNA-binding response regulator [Shewanella benthica KT99] gi|161331083|gb|EDQ02009.1| DNA-binding response regulator [Shewanella benthica KT99] Length = 224 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 128/226 (56%), Gaps = 12/226 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L +E LK + VTD + L K +D +ILD+GL D G Sbjct: 1 MKLLLVEDNALLVEELEKQLKLAGYVTDVTDKAAEADYLLKETNYDCVILDIGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R I TPV +L+ S +KV G +GADDY+ KPF+ +EL+ARI A+++R+ Sbjct: 61 ELLERWRNQGIMTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQRAH 120 Query: 121 GHAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A + T +LS ++ + ++V V+G LT E++++++ + L+K Sbjct: 121 GKAS--LPTKELSFSGVVLDENQQSVSVEGKSFELTAMEFRLLKIFLMSPKKLLSKSQLS 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 179 DKLYQFDDEKESNVVEVYVTHLRKKL-----GKTTIETRRGQGYIF 219 >gi|152986242|ref|YP_001347715.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150961400|gb|ABR83425.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 228 Score = 141 bits (355), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L + V ++D G +G +L ++D +ILD+ L G+ Sbjct: 3 MKLLIVEDEPRIGQYLRQGLAESGYAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR++R A ++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 63 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGN 122 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + + DL ++L + V+ QG RI LT KE+ ++ELL R L K + + ++ Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + +I+V I +LR K+ + + I TV G GYVL E Sbjct: 183 DMNFDSDTNVIEVAIRRLRAKVDDDF-PQRLIHTVRGMGYVLEE 225 >gi|24372213|ref|NP_716255.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24346128|gb|AAN53700.1|AE015509_5 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 224 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 14/228 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 M++LL+ED+ L +E LK YVTD+ + +E L K ++D +ILD+GL D Sbjct: 1 MKLLLVEDNPMLVSELEKQLKQAG---YVTDITDKALEADYLVKETQYDCVILDIGLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E+L R ISTPV +L+ S +KV G +GADDY+ KPF+ +EL+ARI+A++ Sbjct: 58 NGLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117 Query: 118 RSRG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R+ G + + G ++++ +TV V LT E++++++ + L+K Sbjct: 118 RAHGRLNNPNKQLSYGGVTLDEAEQTVSVGEQLYELTAMEFRLLKIFLMSPKKLLSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220 >gi|189499944|ref|YP_001959414.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] gi|189495385|gb|ACE03933.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] Length = 222 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + L+ E F V V G +G+ + E+D +I+D L + G Sbjct: 1 MRILIIEDESGIADFLREGLEEECFAVDVAHNGREGLSMALINEYDLLIVDWLLPGLSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R R PV L+ ++D + GL+SGA+DY+ KPF EEL+ARIR +R S Sbjct: 61 EVCRQFRKEHAQVPVIFLTAKGDLDDVIFGLESGANDYMKKPFAFEELLARIRVQLRLS- 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ G + +NL A V G + LT KE+ ++E L + + T+ + H++D Sbjct: 120 GSETVMMQAGGVEMNLAAHRVTCNGKDVSLTPKEFALLEYLLRNRGSVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +IDV++ LRKKL A G IETV G GYV+R Sbjct: 180 IHFDADTSVIDVYVNFLRKKLDGAGCGA-LIETVRGVGYVIR 220 >gi|148557691|ref|YP_001265273.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148502881|gb|ABQ71135.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 230 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD A A + L F V D G DG+ +D +ILD L + G Sbjct: 4 KILLVEDDAATADFVATGLSEHGFVVDRADNGRDGLFHATDGSYDCVILDRMLPGMDGMA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL A+R A I TPV ILS + + ED+V+GL+ G+DDY++KPF EL+AR+R ++R +G Sbjct: 64 VLGAIRAAGIETPVIILSALGAAEDRVKGLEGGSDDYLTKPFAFAELLARVRLLIRHGQG 123 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ + DL ++L ++ V G I L +E++++E L +T+ M L Sbjct: 124 RSAAAPETRLACDDLEMDLLSRKVRRGGQPIELQPREFRLLEFLLRHAEQVVTRTMLLEG 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D +P +IDV + +LRKK+ + + TV G GY L Sbjct: 184 VWDYHFDPGTNVIDVHVSRLRKKIDEGQ-ARPLLHTVRGSGYRL 226 >gi|281356725|ref|ZP_06243216.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] gi|281316852|gb|EFB00875.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] Length = 230 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD A I L+ + G DG+ D ++D+ L + GF Sbjct: 1 MKILLVEDDARTADFILKGLQQSGYTTVHAADGRDGLFKATTESCDLAVVDIMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR A I PV +LS SS++DK+R LQ+G DDY+ KPF+ EL+ARI+A++RR+ Sbjct: 61 TLIEKLRAAGIKLPVIVLSARSSVDDKIRALQTGGDDYLVKPFSFSELIARIQALLRRAS 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ S + GDLS++L ++ V RI + E+ ++E L+ ++K M + H++ Sbjct: 121 ATAEPSTLTVGDLSIDLLSRKVYRGSTRIDIQPLEFTLLEYLARNAGRVVSKTMIMEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +P+ I++ +C+LR+KL K + TV G GYVL A Sbjct: 181 EYNFDPQTNIVETRMCRLREKLDKPFKEK-LLHTVRGFGYVLEPEA 225 >gi|17548876|ref|NP_522216.1| two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431126|emb|CAD17806.1| probable two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 228 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 134/228 (58%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG+ L ++D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVMLPDLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +V+++LR A + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R ++RR S Sbjct: 61 QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I DL ++L + G RI LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +IDV I +LR K+ + K I+TV G GYVL E+ +D Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFTPK-LIQTVRGMGYVL-EDPED 226 >gi|90414318|ref|ZP_01222297.1| Response regulator [Photobacterium profundum 3TCK] gi|90324656|gb|EAS41203.1| Response regulator [Photobacterium profundum 3TCK] Length = 218 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 124/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 MRILL+EDD L S+ L + V G +G+E+ E F AIILDL L D G Sbjct: 1 MRILLVEDDVMLGKSMVTSLSRHGYTVDWLQQG-NGVEVNLNTETFMAIILDLTLPDTDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVLR +R A S P+ IL+ I+D+V+GL GADDY+ KPF EEL+AR+R ++RR Sbjct: 60 LEVLRRVRKAGHSLPILILTARDEIDDRVKGLDGGADDYLVKPFALEELLARLRVLIRRV 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GH + + GDLS++L V QG+ + LT E++++ L + L+KE L+ Sbjct: 120 SGHTDTQLEIGDLSISLKTNDVHYQGNPVKLTKNEFKILATLVTQSGRVLSKESLQQVLH 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D I+V I LRKK+ G I+ + G GY++ Sbjct: 180 GWDDLASDNAIEVHIHNLRKKI-----GGQLIKNIRGVGYII 216 >gi|149187893|ref|ZP_01866189.1| two-component system response regulator (Pho family) protein [Vibrio shilonii AK1] gi|148838289|gb|EDL55230.1| two-component system response regulator (Pho family) protein [Vibrio shilonii AK1] Length = 224 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 132/224 (58%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD +A + + E V + G DG+ +FD IILD+ L GF Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +TPV ILS S+E++V+GLQSGADDY+ KPF EL+AR + ++RR + Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 121 GHA-QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+L + G L+++L T++ + I + +E+ +++LL T ++K L H+ Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +P+ ++DV +C+LR K+ + I T+ G GYVL+ Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKV-DKGFATPLIHTLRGVGYVLK 223 >gi|238028504|ref|YP_002912735.1| DNA-binding response regulator [Burkholderia glumae BGR1] gi|237877698|gb|ACR30031.1| DNA-binding response regulator [Burkholderia glumae BGR1] Length = 225 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + LK++ V GE + +D ++LDLGL G Sbjct: 6 MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLPKRDGV 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR R + PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 66 EVLRTARARGHALPVLIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRRQA 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++S+I G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 126 GRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G + I V G GY++ + A Sbjct: 186 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 225 >gi|115523941|ref|YP_780852.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517888|gb|ABJ05872.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 231 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLASALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY+SKPF+ EE++ARIRA++RR+ Sbjct: 61 AVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVSKPFHLEEVLARIRALLRRTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G + ++ V V G + +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELSCGPVVLDTRTGRVSVNGAPVKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ ++R+KL + I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRIRRKLD-----VDIIQTVRGLGYLL 216 >gi|196031972|ref|ZP_03099386.1| DNA-binding response regulator [Bacillus cereus W] gi|218904351|ref|YP_002452185.1| DNA-binding response regulator [Bacillus cereus AH820] gi|195994723|gb|EDX58677.1| DNA-binding response regulator [Bacillus cereus W] gi|218539685|gb|ACK92083.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 224 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221 >gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 225 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 131/228 (57%), Gaps = 17/228 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIPG 59 +L+IED+K +A IEL L +E Y TD+ DG+ L KF E D ++LDL L + G Sbjct: 7 VLVIEDEKEIARFIELELGAEG---YTTDVAYDGVTGLSKFREVAPDLVVLDLMLPVLDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R +TP+ IL+ I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR Sbjct: 64 LEVARRIRKTS-NTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL +NLD + + G R+ L+ KE++++ELL+ ++ ++ Sbjct: 123 NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW 182 Query: 180 DGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE ++DV+I LR+KL G + I TV G GYVLRE Sbjct: 183 -----PEYTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLRE 224 >gi|229092184|ref|ZP_04223365.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229122743|ref|ZP_04251952.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228660607|gb|EEL16238.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228691175|gb|EEL44939.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 226 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223 >gi|313884093|ref|ZP_07817859.1| response regulator ArlR [Eremococcus coleocola ACS-139-V-Col8] gi|312620540|gb|EFR31963.1| response regulator ArlR [Eremococcus coleocola ACS-139-V-Col8] Length = 232 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 133/228 (58%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+K LA ++L L+ E + + G G+E E+D I+LDL L ++ G E Sbjct: 7 RVLIIEDEKNLARFVDLELQHEGYETDIRHDGRSGLEAALDEEWDVILLDLMLPELNGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K TP+ I++ S+ D+V GL GADDYI KPF EEL+AR+RA+ RR Sbjct: 67 VCRRIRPIK-DTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRRI-D 124 Query: 122 HAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H + L VT DL V + V+ I LT +EY+++ L N ++++ Sbjct: 125 HEEELRVTHQPTVEYRDLVVEKANRIVKRGDTVIDLTKREYELLLFLMENINMVMSRDTL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + E E ++DV+I LR K+ + G ++YI+TV G GYV+R Sbjct: 185 LDKVWGYKSEVETNVVDVYIRYLRNKI-DVPGQESYIQTVRGTGYVMR 231 >gi|239833816|ref|ZP_04682144.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239821879|gb|EEQ93448.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 222 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ LA+ + L+ N++V D + F E+D +ILDLGL D G Sbjct: 1 MRILLVEDNLTLANWLAKSLQQSNYSVDTVHDAADAEQALAFTEYDLVILDLGLPDKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R PV IL+ +S++ ++RGL +GADDY++KPF EL ARIRA +RR+ Sbjct: 61 DVLEHVRGKGNEVPVIILTANASLDGRIRGLDAGADDYLAKPFELSELEARIRAHLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L + + + + + L KE+ ++E L R TT++K + +Y+ Sbjct: 121 QRTAPVVTCGLLRFDTNTRLFSIGDEPLSLAPKEHAVLEQLLRRIGTTVSKTALVQGIYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + I+++I +LRKKL G + I T+ G GY+LRE Sbjct: 181 FDSETDENAIEIYIHRLRKKLE---GSRAEIVTLRGLGYLLRE 220 >gi|163816850|ref|ZP_02208213.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759] gi|158448107|gb|EDP25102.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759] Length = 224 Score = 141 bits (355), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+KAL+ +++++LK N++V G++ + +D +ILD+ + + GF Sbjct: 1 MRLLLAEDEKALSSALQVILKHNNYSVDAVYNGQEAYDYIMAGVYDGVILDVMMPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R PV +L+ S +DK+ GL GADDY++KPF+ +EL+ARIRAI RR Sbjct: 61 TVLSKIRSEGCDVPVIMLTAKSETDDKINGLDLGADDYLAKPFDTKELLARIRAITRRKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ GD ++N + G + L KEYQ++ELL + + ++ E+ + ++ Sbjct: 121 EAVSTDVIYGDCTLNSLNYELSSGGGSVKLQNKEYQIMELLMANQKSIISAELMMEKIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E+ ++ V I LRKKL G K I+ V +GY L Sbjct: 181 YDTDTEISVVWVNISYLRKKLGQ-IGSKVSIKAVRNQGYTL 220 >gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c] gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 325 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + V G + + ++ DA++LD+ L D+ G Sbjct: 83 LRVLVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMIDEFQPDAVVLDIMLPDMDGL 142 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R + PV L+ ++ED+V GL +G DDY++KPF+ EEL AR+R ++RR Sbjct: 143 AVLRGMRSVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLMRRVH 202 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G ++++ GDL+++ D++ V G IHLT E++++ L L+K L+ Sbjct: 203 GTVAARRNVLSVGDLTLDEDSREVYRDGAEIHLTATEFELLRYLMRNPRRVLSKAQILDR 262 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + ++++++ LRKK+ AG + I T+ G GYVLR Sbjct: 263 VWNYDFGGQANVVELYVSYLRKKID--AGRQPMIHTMRGAGYVLRP 306 >gi|167950592|ref|ZP_02537666.1| two-component system regulatory protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 258 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 86/214 (40%), Positives = 132/214 (61%), Gaps = 1/214 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ L + +E L+ E + V D G DG+ L + Y D I+D+GL + G Sbjct: 1 MRVLLVEDEAELRNPLEARLRREGYTVDAADNGRDGLFLGREYGIDVGIVDIGLPQLSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR A P+ IL+ + +DKV GL++GADDY+ KPF+ EEL+AR+ A++RR+ Sbjct: 61 EVIRQLRQAGKHFPILILTARGNWQDKVEGLEAGADDYLVKPFHVEELLARLNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +Q LI G + +N ++TV +Q I LT EY+++E + L ++K H+YD Sbjct: 121 GWSQPLIECGPIELNTRSQTVCLQQQPIDLTAYEYKVLEYMMLHAGQVVSKSELTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214 + + +I+VF+ +LRKKL A K IET+ Sbjct: 181 QDWDRDSNVIEVFVRRLRKKLDPDARYKP-IETL 213 >gi|209547341|ref|YP_002279259.1| two component winged helix family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538585|gb|ACI58519.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 222 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA + L+ + + + GED + K E+ A+ILDL L + G Sbjct: 1 MRLLVVEDNKDLAAWLGKALRQAQYAIDIAHDGEDAEHMLKVAEYSAMILDLALPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV IL+ +S++ +V GL SGADDY++KPF EL ARIRA+VRR + Sbjct: 61 TLLKRLRQSGNKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S I G+L + + V + LT +EY ++E L ++ T++K ++ Sbjct: 121 DRASSEITVGNLRFSGGTRQFFVADELLQLTPREYAVLEQLVMKVGNTVSKAALSESVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DE + I++++ +LRKKL +++ I T+ G GY+LR Sbjct: 181 FDDEADPSAIEIYVHRLRKKLESSS---VQIATLRGLGYLLR 219 >gi|325521131|gb|EGD00037.1| OmpR family two-component system response regulator [Burkholderia sp. TJI49] Length = 223 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G L+ + ++ + + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSCVACGPLAYDSVDRSFRLADEALPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL N+ I T+ G GY+L Sbjct: 181 LDESVNPDAIEIYVHRLRKKLENSGVA---IVTLRGLGYLL 218 >gi|332285068|ref|YP_004416979.1| two component heavy metal response transcriptional regulator, winged helix family protein [Pusillimonas sp. T7-7] gi|330429021|gb|AEC20355.1| two component heavy metal response transcriptional regulator, winged helix family protein [Pusillimonas sp. T7-7] Length = 227 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ + L F V + G DG L +D IILD+ L D+ G+ Sbjct: 1 MKLLLVEDETKTGDYVRQGLVESGFVVDLVRTGLDGHHLALTGSYDLIILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ALR AK STPV L+ S+ED+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 RIVQALRDAKSSTPVLFLTARDSVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A Q + DL +++ + + + RI+LT KE+ ++ELL R+ L + + + ++ Sbjct: 121 APAFQDQLQIADLVLDIPRRRAQRKSVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I TV G GY+L Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFDPK-LIHTVRGMGYML 221 >gi|219668333|ref|YP_002458768.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538593|gb|ACL20332.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 225 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 5/213 (2%) Query: 14 HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73 +++ +LK N++V D G D ++ +D I+LD+ + + G EVL LR IST Sbjct: 14 NALTAILKHNNYSVDAVDNGADALDWALAGNYDGILLDIMMPKMNGLEVLAKLREKGIST 73 Query: 74 PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS 133 P+ +L+ IED++ GL GADDY++KPF EL+ARIRAI RR A +L+ G+L Sbjct: 74 PILMLTAKGEIEDRIEGLDHGADDYLTKPFAMGELLARIRAITRRKTEFAPNLLTVGNLQ 133 Query: 134 VNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 LD E+ G + I L KEYQM+E++ N ++ E F+ ++ E E+ ++ Sbjct: 134 --LDRANYELSGEKGSIRLGNKEYQMMEMMMSSPNRLISTEQFMERIWGYDAEAEINVVW 191 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 V+I LRKKL+ A G I+ G GY L ++ Sbjct: 192 VYISYLRKKLT-ALGSTVTIKASRGLGYTLEDS 223 >gi|116249330|ref|YP_765171.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115253980|emb|CAK12376.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 222 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA + L+ + + + GED + K E+ A+ILDL L + G Sbjct: 1 MRLLVVEDNKDLAAWLGKALRQAQYAIDIAHDGEDAEHMLKVAEYSAMILDLALPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV IL+ +S++ +V GL SGADDY++KPF EL ARIRA+VRR + Sbjct: 61 TLLKRLRQSGNKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S I G+L + + V + LT +EY ++E L ++ T++K ++ Sbjct: 121 DRASSEITVGNLRFSGGTRQFFVADELLQLTPREYAVLEQLVMKLGNTVSKAALSESVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DE + I++++ +LRKKL +++ I T+ G GY+LR Sbjct: 181 FDDEADPSAIEIYVHRLRKKLESSS---VQIATLRGLGYLLR 219 >gi|228946826|ref|ZP_04109128.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812813|gb|EEM59132.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 226 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGINGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 223 >gi|288957923|ref|YP_003448264.1| two-component response regulator [Azospirillum sp. B510] gi|288910231|dbj|BAI71720.1| two-component response regulator [Azospirillum sp. B510] Length = 226 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 135/228 (59%), Gaps = 12/228 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A + LK V V + G++G+ L +D +I+D L G Sbjct: 1 MKILVIEDDRQAASYLAKGLKEAGHVVDVANDGKEGLFLAGAEHYDVMIVDRMLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A TPV LS + S++D+V+GL++G DDY++KPF EL+ARI +VRR R Sbjct: 61 SLVQVLRAAGNDTPVLFLSALGSVDDRVKGLKAGGDDYLTKPFAFSELLARIEVLVRR-R 119 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G A Q+ + GDL ++L +++V+ G I L +E+ ++E L + +T+ M L ++ Sbjct: 120 GAAQPQTRLAVGDLELDLLSRSVKRCGKAIDLLPREFSLLEYLMRNAGSVVTRTMMLENV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222 +D +P+ +IDV I +LR+K+ K++ I TV G GY LR Sbjct: 180 WDYHFDPQTNVIDVHIARLRQKID-----KDFPTPLIHTVRGAGYSLR 222 >gi|152998792|ref|YP_001364473.1| two component transcriptional regulator [Shewanella baltica OS185] gi|151363410|gb|ABS06410.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] Length = 219 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L + L + V D G DG L + F+A+ILDLGL PG Sbjct: 1 MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R ++ PV IL+ + ++V GL++GADDY+ KPF+ EEL+AR+ ++RR Sbjct: 61 QVLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +++ +S+++D + V V G I LT EY+++ L + + ++K +Y Sbjct: 121 GRADNVLQHAGISLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+V++ +LR++L GK+YIET G+GY L+E Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKE 219 >gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 228 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 134/226 (59%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ +A +EL LK E + V + + G G+E + D ++LD+ L + G E Sbjct: 3 KILIVEDEVKIARFVELELKYEGYTVDIANDGRSGLEKALKSDIDLVLLDVMLPGLSGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR-AIVRRSR 120 V R +R+ P+ +L+ + DKV GL GADDY++KPF EEL+ARIR A+ R S+ Sbjct: 63 VCRRIRMES-QVPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVALSRHSK 121 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A Q ++ G+L +NL + + + LT KEY+++E L KN LT+E LN+ Sbjct: 122 SSAEAKQDVLTHGELKLNLTSHSANYGEEDLTLTKKEYELLEYLMRNKNIALTREQLLNN 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D + ++DV+I LR+K+ + G + I TV G GY++R+ Sbjct: 182 VWDYEYFGDTNVVDVYIRYLRQKIDDKY-GVHLISTVRGVGYIIRD 226 >gi|84387151|ref|ZP_00990173.1| probable two-component system response regulator (Pho family) [Vibrio splendidus 12B01] gi|84378012|gb|EAP94873.1| probable two-component system response regulator (Pho family) [Vibrio splendidus 12B01] Length = 224 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD +A + + E V G DG+ E+D IILD+ L GF Sbjct: 1 MKILLIEDDIHIARFLVNGFQQEGITVTHATDGVDGLHEAVTEEYDVIILDIMLPKKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +TPV ILS S+E++V+GLQSGADDY+ KPF EL+AR + +VRR + Sbjct: 61 EVLAELRGQGYATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLVRRGK 120 Query: 121 GH-AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q L + G LS++L T++ I + +E+ +++LL + ++K L H+ Sbjct: 121 QPTPQPLELHYGPLSLDLLKHTLQRDQQTITINQREFMLMKLLLENREAVMSKTAILEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +P+ ++DV +C+LR K+ + K I T+ G GYVL+ Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKV-DKGFSKPLIHTLRGVGYVLK 223 >gi|326801362|ref|YP_004319181.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326552126|gb|ADZ80511.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 231 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 127/228 (55%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED LA I+ L ++ ++V + GE G+++ FD I+LD+ L I G E Sbjct: 4 KILVIEDQSKLASLIQRGLSADGYDVRIASDGELGLDMIYHNAFDLIVLDVMLPGISGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ +S+ + V GL SGADDY+ KPF EEL ARIR +VRR+ G Sbjct: 64 VCQLLRKENNPVPILMLTALSATNNVVTGLDSGADDYMVKPFKFEELKARIRTLVRRANG 123 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A S I DL +++DA+ G I LT EY+++E + KN LT+ L Sbjct: 124 TNGQQNPASSTIRIMDLVLDMDARIATRGGKEIALTATEYRLLEFMMKNKNKVLTRIEIL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 H++D ++DV++ LRKK+ K I T+ G GY ++E Sbjct: 184 EHVWDINFNMGTNVVDVYVNYLRKKVDKGFDVK-LIHTMIGVGYSIKE 230 >gi|86146208|ref|ZP_01064533.1| probable two-component system response regulator (Pho family protein) [Vibrio sp. MED222] gi|85835919|gb|EAQ54052.1| probable two-component system response regulator (Pho family protein) [Vibrio sp. MED222] Length = 224 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD +A + + E V G DG+ E+D IILD+ L GF Sbjct: 1 MKILLIEDDIHIARFLVNGFQQEGITVTHATDGVDGLHEAVTEEYDVIILDIMLPKKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +TPV ILS S+E++V+GLQSGADDY+ KPF EL+AR + +VRR + Sbjct: 61 EVLAELRGQGYATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLVRRGK 120 Query: 121 -GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q L + G LS++L T++ I + +E+ +++LL + ++K L H+ Sbjct: 121 QPTTQPLELHYGPLSLDLLKHTLQRDQQTITINQREFMLMKLLLENREAVMSKTAILEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +P+ ++DV +C+LR K+ + K I T+ G GYVL+ Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKV-DKGFSKPLIHTLRGVGYVLK 223 >gi|70731816|ref|YP_261558.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5] gi|68346115|gb|AAY93721.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5] Length = 225 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H ++ L V E+ + + + D ++DLGL + G Sbjct: 1 MKLLVVEDEALLRHHLQTRLTDSGHVVESVANAEEALYQTEQFNHDLAVIDLGLPGMGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRNRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELDARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I+ G L ++L+ K + + LT EY+++E L + K+ + LY Sbjct: 121 GFTQSTIIAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DE + +I+V + +LR+KL +G K I+TV G GY+ E + Sbjct: 181 DDDERDPNVIEVLVGRLRRKLEGPSGFKP-IDTVRGLGYLFNERCR 225 >gi|33593530|ref|NP_881174.1| two-component response regulatory protein [Bordetella pertussis Tohama I] gi|33601058|ref|NP_888618.1| two-component response regulatory protein [Bordetella bronchiseptica RB50] gi|33572886|emb|CAE42822.1| two-component response regulatory protein [Bordetella pertussis Tohama I] gi|33575493|emb|CAE32571.1| two-component response regulatory protein [Bordetella bronchiseptica RB50] gi|332382938|gb|AEE67785.1| two-component response regulatory protein [Bordetella pertussis CS] Length = 229 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 12/238 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRIL+ EDD LA + +S N Y D DG+ FD +ILDLGL + Sbjct: 1 MRILIAEDDSILADGLS---RSLRHNGYAVDAVRDGLAADSALAVQPFDLLILDLGLPHL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 PG EVLR LR PV IL+ SIE +V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 PGLEVLRRLRARNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +++ G L + + V + L+ +E ++E+L R ++K ++H Sbjct: 118 RGAGGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLARSGRMVSKTQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 L + +E I+V++ +LRKKL +G K I TV G GY L +D+ YL + Sbjct: 178 LCEWGEEVSTNAIEVYVHRLRKKL-EPSGVK--IITVRGLGYCLE---RDQGASYLAS 229 >gi|253997123|ref|YP_003049187.1| winged helix family two component transcriptional regulator [Methylotenera mobilis JLW8] gi|253983802|gb|ACT48660.1| two component transcriptional regulator, winged helix family [Methylotenera mobilis JLW8] Length = 221 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 12/225 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MR+LL+EDD L ++ L+ Y TDL DGIE K +D ILDLGL Sbjct: 1 MRLLLVEDDPILGKQLQTSLQRAG---YATDLATDGIEAEIQGKLEPYDLAILDLGLPKR 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E+L R A+I+TPV IL+ +DKV G SGADDY+SKPF EEL+AR+ A+++ Sbjct: 58 NGLEILAHWRSAQINTPVIILTARGGWQDKVAGFNSGADDYVSKPFQIEELLARVGAVLK 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RS + S + + +N +++ G++ LT E++++ L L+K + Sbjct: 118 RSMLNRASELQSTQFKLNEHTQSIIFDDGNQQQLTNVEFRLLRYFMLHPGHILSKSVLTE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H+Y+ ++ + +I+V+I +LR+K+ G +I+T G+GYV Sbjct: 178 HVYEYDEDKDSNVIEVYINRLRQKI-----GSQHIQTRRGQGYVF 217 >gi|71279444|ref|YP_268131.1| transcriptional regulatory protein PhoP [Colwellia psychrerythraea 34H] gi|71145184|gb|AAZ25657.1| transcriptional regulatory protein PhoP [Colwellia psychrerythraea 34H] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 133/221 (60%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+AL ++ L +N++V V GE + Y++D ++DLGL I G Sbjct: 1 MRLLLVEDDQALQQELQKQLLLQNYSVDVASDGEIALFQGLEYDYDIAVIDLGLPKIDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ALR + P+ IL+ +DKV GL +GADDY++KPF+ EEL +R+ A++RRS Sbjct: 61 TVVKALREKGRNFPILILTARDRWQDKVSGLDAGADDYLTKPFHVEELTSRLNALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G S+++ V V+ + L+ E+++ + L L ++K H+YD Sbjct: 121 GKASTMINNGPYSLDIATSQVLVEQVSVSLSAHEFKVFKYLMLHVGEVISKTTLTEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+VFI +LRKKL + N+IET G+GY L Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDSKYNFIETKRGQGYRL 220 >gi|330958140|gb|EGH58400.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 222 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D I+LDLGL + G Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLEQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + + L+++ + V G + LT E++++ L L+K HLY Sbjct: 121 GMANQPTLESAGLNLDESRQCVSRDGVDVQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG +E + +I+V + LR+KL G+ +ET G+GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRTVLETRRGQGYL 216 >gi|288957332|ref|YP_003447673.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288909640|dbj|BAI71129.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 260 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 130/232 (56%), Gaps = 3/232 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED++ LA L F V + ED FDA++LDLGL D G Sbjct: 1 MRLLLIEDNRRLATLTAEGLGKAGFAVDLVHSAEDASAALAVAAFDAVLLDLGLPDADGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ALR +TPV +L+ ++D+VRGL GADDY+ KPF EELVARIRA++RR Sbjct: 61 TLLSALRARADTTPVLVLTARDGVDDRVRGLNLGADDYLVKPFALEELVARIRALLRRP- 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A L++ G+++ + DA+ V G + L+ +E +ELL R ++K N LY Sbjct: 120 GAALGLVLQQGNVAFDSDARLASVAGRPLDLSRRELDALELLLRRAGRVVSKTALENGLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 +E ++V I +LRK+L AAG ++T+ G GY+L E + E Sbjct: 180 GFGEEIGSNAVEVLIHRLRKRL-QAAGATAGVQTLRGIGYILTETPAETGPE 230 >gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis KF147] gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis KF147] Length = 230 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 133/228 (58%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + + D G G+E ++D I+LDL L ++ GFE Sbjct: 5 KILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEASSKDYDLILLDLMLPELDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 V R LR K TP+ +++ S D+V GL GADDYI+KPF EEL+AR+RA RR Sbjct: 65 VARRLRKEK-DTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123 Query: 121 GHAQSLIVTG---DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT--TLTKEMFL 175 GHA DL ++ +TV I LT +EY + LL+L +N +T+E + Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDL--LLTLMQNVGDVVTREHLV 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + E ++DV+I LR K+ + G +YI+TV G GYV+RE Sbjct: 182 SQVWGYEEGTETNVVDVYIRYLRNKI-DVEGQDSYIQTVRGLGYVMRE 228 >gi|196042673|ref|ZP_03109912.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225865148|ref|YP_002750526.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|196026157|gb|EDX64825.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225786004|gb|ACO26221.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 221 >gi|225390635|ref|ZP_03760359.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme DSM 15981] gi|225043320|gb|EEG53566.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme DSM 15981] Length = 235 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 132/228 (57%), Gaps = 11/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ E V GE+ IEL + E+D ++LD+ L G+E Sbjct: 3 KILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIELARKTEYDMVLLDVMLPKHDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R P+ +L+ DK+ GL+ GADDYISKPFN E+ ARI+AI+RRS Sbjct: 63 VCQAIREFS-DMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIMRRSGK 121 Query: 120 ----RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R Q+ +I GDL ++ +++ V + G I+LT KE+ ++ELL N ++E Sbjct: 122 NRKNRKEEQNSHVIGAGDLKMDTESRRVYISGREINLTAKEFDLLELLVRNPNKVYSREA 181 Query: 174 FLNHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L +++ R D +V+ +DV + +LR+K+ + ++ T WG GY Sbjct: 182 LLTYVWGNRAMDSGDVRTVDVHVRRLREKIEPSPSDPKFVHTKWGVGY 229 >gi|297537645|ref|YP_003673414.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297256992|gb|ADI28837.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 227 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L S L+S+ + V G+ I + +DAIILD+GL + GF Sbjct: 1 MRILLVEDDTHLGESTARALRSQQWFVDWVRNGDSVINMIGLVSYDAIILDVGLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +LR S PV +L+ +I+D+V G Q GADDY+ KPF +ELVARI+AI RR Sbjct: 61 EILHSLRSQNNSLPVLMLTARDTIDDRVYGFQLGADDYLVKPFALKELVARIQAITRRFH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I+ G L ++L AK + + L +E+ ++ + ++KE L + D Sbjct: 121 TRQHNEIIFGILRIDLTAKRAYLSDKSLELLPREWAVLVYILNNLGKVVSKEQILEAISD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + P I+V+I +LR KL+ A I T+ G GY++ E+ Sbjct: 181 WDEAPSSNAIEVYISRLRTKLTPAGIS---IRTIRGFGYLIEES 221 >gi|300853644|ref|YP_003778628.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300433759|gb|ADK13526.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 225 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ L+ ++ +LK N+ V G G E+ + +D IILD L + G Sbjct: 1 MRLLLVEDEVMLSDALVYILKKNNYAVDAAYDGITGQEMAESEIYDLIILDRMLPEKNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R I TPV +L+ M SIE++V GL +GADDY+ KPF+KEEL+ARIRA+ RR Sbjct: 61 DILKFIRKKGIETPVLMLTAMDSIENRVEGLDNGADDYLVKPFSKEELLARIRALSRRHT 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I L+ N +E G++ LT KE Q++ELL+ KN LTK+ L+ ++ Sbjct: 121 DFIQHGSIKLSSLTFNPLRGEIECNGNKTKLTTKESQLLELLARNKNQVLTKDQILDRVW 180 Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E+ I+V+ LRKKL IET+ G GY L+E Sbjct: 181 GLDSDIEMNNNIEVYFSYLRKKLRELKCNV-VIETIRGIGYCLKE 224 >gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 130/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 1 MRLLVVEDNTSLLESIVQILCDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G I LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223 >gi|51244452|ref|YP_064336.1| Pho family two-component response regulator [Desulfotalea psychrophila LSv54] gi|50875489|emb|CAG35329.1| probable two-component system response regulator (Pho family) [Desulfotalea psychrophila LSv54] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIEDD +A I+ L+ F V G +G+ + A I+D+ L + G Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R A TPV ILS S++D+++GLQ G DDY+ KPF+ EL+ R++A++RR + Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H+ Q+ + G L ++L + V G +I L KEY ++ ++ T L+K L +Y Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P+ ++DV +C+LR K+ G+ I+T+ G GYVLR + Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGF-GQQLIQTIRGVGYVLRSH 224 >gi|146291464|ref|YP_001181888.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|145563154|gb|ABP74089.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 219 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L + L + V D G DG L + F+A+ILDLGL PG Sbjct: 1 MRLLLIEDDTDLVARLIPALNEAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R ++ PV IL+ + ++V GL++GADDY+ KPF+ EEL+AR+ ++RR Sbjct: 61 QVLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +++ +S+++D + V V G I LT EY+++ L + + ++K +Y Sbjct: 121 GRADNVLQHAGVSLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+V++ +LR++L GK+YIET G+GY L+E Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKE 219 >gi|196037923|ref|ZP_03105233.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196031193|gb|EDX69790.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQIITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221 >gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603] gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 6 MRLLVVEDNASLIESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDY+ KPF EL ARIRA++RRS Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 124 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K +V G I LT K+Y+++E L L +E + ++ Sbjct: 125 SLTTKQTICYKGIELFGKDKDAQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 228 >gi|228928262|ref|ZP_04091303.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229185421|ref|ZP_04312603.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228598009|gb|EEK55647.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228831309|gb|EEM76905.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 226 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 223 >gi|89893958|ref|YP_517445.1| hypothetical protein DSY1212 [Desulfitobacterium hafniense Y51] gi|89333406|dbj|BAE83001.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 232 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 5/213 (2%) Query: 14 HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73 +++ +LK N++V D G D ++ +D I+LD+ + + G EVL LR IST Sbjct: 21 NALTAILKHNNYSVDAVDNGADALDWALAGNYDGILLDIMMPKMNGLEVLAKLREKGIST 80 Query: 74 PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS 133 P+ +L+ IED++ GL GADDY++KPF EL+ARIRAI RR A +L+ G+L Sbjct: 81 PILMLTAKGEIEDRIEGLDHGADDYLTKPFAMGELLARIRAITRRKTEFAPNLLTVGNLQ 140 Query: 134 VNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 LD E+ G + I L KEYQM+E++ N ++ E F+ ++ E E+ ++ Sbjct: 141 --LDRANYELSGEKGSIRLGNKEYQMMEMMMSSPNRLISTEQFMERIWGYDAEAEINVVW 198 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 V+I LRKKL+ A G I+ G GY L ++ Sbjct: 199 VYISYLRKKLT-ALGSTVTIKASRGLGYTLEDS 230 >gi|118478501|ref|YP_895652.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417726|gb|ABK86145.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] Length = 236 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 233 >gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 223 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+ED+ LA + MLK E V + GE +L FD +ILD L G Sbjct: 1 MHLLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQSFDLVILDWMLPGHSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R LR S PV +L+ +I+ K+ G ++GADDY+ KPF EL+AR+RA++RR Sbjct: 61 DLCRRLRAGGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ K V G I L+ KEYQ++E LT E L H++D Sbjct: 121 ERQSDELRLGDLVLDVSNKLVRRAGRPIDLSAKEYQLLEYFMRHPGQLLTHEQILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 EP ++ + LR+K+ A G I TV+G+GY Sbjct: 181 SGAEPNSNVVAAQVKLLRRKIDKDA-GTALIHTVYGQGY 218 >gi|126172493|ref|YP_001048642.1| two component transcriptional regulator [Shewanella baltica OS155] gi|160873368|ref|YP_001552684.1| two component transcriptional regulator [Shewanella baltica OS195] gi|304411806|ref|ZP_07393418.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307306140|ref|ZP_07585885.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125995698|gb|ABN59773.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|160858890|gb|ABX47424.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|304349994|gb|EFM14400.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911013|gb|EFN41440.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315265596|gb|ADT92449.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 219 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L + L + V D G DG L + F+A+ILDLGL PG Sbjct: 1 MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R ++ PV IL+ + ++V GL++GADDY+ KPF+ EEL+AR+ ++RR Sbjct: 61 QVLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +++ +S+++D + V V G I LT EY+++ L + + ++K +Y Sbjct: 121 GRADNVLQHAGVSLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+V++ +LR++L GK+YIET G+GY L+E Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKE 219 >gi|323525961|ref|YP_004228114.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382963|gb|ADX55054.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L I L+ + F V GE + + A +LDLGL + G Sbjct: 1 MRILLVEDDPLLGDGIRAGLRQQGFQVDWVQDGEAAQRELRAQPYAAAVLDLGLPRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR++R + P+ +L+ ++ D+VRGL GADDY+ KP + EEL AR+RA+VRR+ Sbjct: 61 DVLRSVRRVGVDFPILVLTARDAVPDRVRGLDMGADDYVVKPVDLEELGARLRALVRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + D+ ++ ++ V G + L+ +E+ ++ +L L L++E HLY Sbjct: 121 GRPRERLEAHDVVLDPASRMVYRAGVPVTLSSREFDLLHVLMLNAGRVLSREQIEQHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E ++V + +LR KL G + I TV G GYVL Sbjct: 181 WGQEVESNAVEVHVHRLRSKL-----GSDVIRTVRGIGYVL 216 >gi|290954874|ref|YP_003486056.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260644400|emb|CBG67485.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 229 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA I+ L + F V V G + + + + +DAI+LD+ L + GF Sbjct: 7 MRLLLVEDELRLADVIKSGLVDKGFAVDVVGDGSEAVWMAGEHRYDAIVLDVMLPGLNGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + TP+ +L+ M D+V+ L SGADDY++KPF+ L+AR+RA+VRR Sbjct: 67 AVCRKLRESGNWTPIMMLTAMDGELDEVQSLDSGADDYLAKPFSFAVLLARLRALVRRGA 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I GDL V+ A G I LT KE+ ++ LL+ R +TK L H +D Sbjct: 127 QERPAVIEVGDLQVDPAAACARRGGVHIALTPKEFAVLHLLARRAGQVVTKTELLQHAWD 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + I++V++ LR+K+ +A + TV G GY+L Sbjct: 187 FAFEGDPNIVEVYVSALRRKI-DAPFAVRTLTTVRGSGYLL 226 >gi|221196554|ref|ZP_03569601.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2M] gi|221203223|ref|ZP_03576242.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2] gi|221177157|gb|EEE09585.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2] gi|221183108|gb|EEE15508.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2M] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S + G L+ + ++ + + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHSRVECGPLAYDSVDRSFRLADEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I++++ +LRKKL N+ I T+ G GY+L A Sbjct: 181 LDESVNADAIEIYVYRLRKKLENSGVA---IVTLRGLGYLLEAKA 222 >gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] Length = 229 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ +A ++L L+ E + + G DG+ + ++D I+LD+ L ++ G + Sbjct: 4 RILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQYREQQWDLILLDIMLPEMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + TPV +L+ S +EDKV+GL GA+DY++KPF EEL+ARIR +R S+ Sbjct: 64 VLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQK 123 Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + G LS+N + V G I LT +EY ++ L LT+E L ++ Sbjct: 124 ASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DV+I +R+KL A I+TV G GYVL+EN Sbjct: 184 GFDYYGDTNVVDVYIRYVRQKLE-IANVTPIIQTVRGVGYVLKEN 227 >gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92] gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92] Length = 229 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 125/219 (57%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L+++N+ V T GE+ + L + Y +D I+DLGL + G Sbjct: 1 MKLLVVEDDPDLRRQLVTALENKNYTVEETADGEEALYLGQEYPYDLAIVDLGLPKLSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R R P+ IL+ +DKV GL++GADDY+ KPF+ EEL AR+ A++RR+ Sbjct: 61 EVIRQWRDDGKEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH++ ++ G + ++ + V + LT EY+ E L L T++K HLY Sbjct: 121 GHSKPVLEFGPIKMDTTGRVVYRHNEPVKLTSYEYRTFEYLVLNAGKTISKSELTEHLYH 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +++VFI +LR+KL + I TV G GY Sbjct: 181 QDFDRDSNVLEVFIRRLRQKL-DPDQDLQPITTVRGLGY 218 >gi|323494129|ref|ZP_08099245.1| OmpR family two-component response regulator [Vibrio brasiliensis LMG 20546] gi|323311756|gb|EGA64904.1| OmpR family two-component response regulator [Vibrio brasiliensis LMG 20546] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD +A + + + + D G DG+ +D I+LD+ L + GF Sbjct: 1 MKILLIEDDAHIARFLINGFQQQACTITHADNGVDGLHEAVTQAYDVIVLDIMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +TPV ILS S+E++V GLQSGADDY+ KPF EL AR +++ RR + Sbjct: 61 EVLAQLRGEGHTTPVIILSAKHSVEERVLGLQSGADDYLVKPFAFPELFARCQSLARRGK 120 Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 AQS ++ +LS++L T++ G +HL +E+ +I+L+ + +TK L + Sbjct: 121 QNQAQSHTLSYSELSLDLFKHTLQRAGKTLHLNQREFMLIKLMMEHPESVITKTAILEQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +P+ ++DV +C+LR K+ + I T+ G GYVL+ Sbjct: 181 WGHQFDPQTNVVDVLVCRLRGKV-DKGFDTPLIHTLRGVGYVLK 223 >gi|322514296|ref|ZP_08067353.1| two component response regulator [Actinobacillus ureae ATCC 25976] gi|322119815|gb|EFX91839.1| two component response regulator [Actinobacillus ureae ATCC 25976] Length = 221 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDDK + ++L L +NF V G+ G + ++DA++LDL L + G Sbjct: 1 MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFDALFSTQYDAVVLDLSLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R PV IL+ +++D++ G SGADDY+ KPF E+V R++A+VRR Sbjct: 61 DILKRWRKEHQDIPVLILTARDTLDDRILGFNSGADDYLCKPFALMEVVVRLQALVRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S IV G L ++ + + + + I LT KE+Q+++L K+ LT+ LY Sbjct: 121 QQSSSEIVIGSLRIDNNTHSATLADNPIILTSKEFQLLQLFVSNKDKVLTRSSIEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++V+I LRKKL GK++I+TV G GY L Sbjct: 181 WDNDVGSNTLEVYIHNLRKKL-----GKSWIKTVHGVGYRL 216 >gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L] gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L] Length = 229 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V+I LRKKL G + I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYIHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229 >gi|322392158|ref|ZP_08065620.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145058|gb|EFX40457.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 134/222 (60%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +STPV I++ SI+DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGVSTPVLIMTAKESIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GDL+VNL V V G + L GKE++++ +N L K + L+ Sbjct: 121 KFNENTLSYGDLTVNLSTNEVRVDGTVVELLGKEFELLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ K+RKKL + +N ++T+ GY+L+ Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGSDFAEN-LQTLRSVGYILK 221 >gi|149201723|ref|ZP_01878697.1| two-component response regulator [Roseovarius sp. TM1035] gi|149144771|gb|EDM32800.1| two-component response regulator [Roseovarius sp. TM1035] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ LA S+ +L+ E F V E E K FD ++LD L D G Sbjct: 1 MRILLVEDEPRLAESLRKVLERERFIVDHASGVESAREASKLGTFDLVLLDRSLPDGEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +LR V +LS + + D+V GL GADDY++KPF+ +E++ARIRA+ RR Sbjct: 61 SLLPSLRADNPGIHVIVLSARNGVNDRVAGLDGGADDYLTKPFSIDEMLARIRAVFRRPA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + I G L +L + VEV G RI L +E +++ L R+ T+ +E N ++ Sbjct: 121 KLAHATIRAGSLVFDLAYEEVEVDGARIDLPRRELRVLAALIKRRGRTVQREALENAVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +D I +LR++L+ AG + I + G GY+LRE Sbjct: 181 FDDEIQSNTLDSHISRLRRRLTT-AGARIEIHAIRGVGYLLRE 222 >gi|145637649|ref|ZP_01793304.1| transcriptional regulatory protein [Haemophilus influenzae PittHH] gi|145269172|gb|EDK09120.1| transcriptional regulatory protein [Haemophilus influenzae PittHH] Length = 221 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + + +++ L F V G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTKLGFAVDWFIDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R PV IL+ +++++V+GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 61 DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ S+I + ++ + ++V + I LT +EY+++ELL L K+ L++ L Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKLSS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL GK +I TV G GY L Sbjct: 181 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216 >gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 230 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 133/228 (58%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + + D G G+E ++D I+LDL L ++ GFE Sbjct: 5 KILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 V R LR K TP+ +++ S D+V GL GADDYI+KPF EEL+AR+RA RR Sbjct: 65 VARRLRKEK-DTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123 Query: 121 GHAQSLIVTG---DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT--TLTKEMFL 175 GHA DL ++ +TV I LT +EY + LL+L +N +T+E + Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDL--LLTLMQNVGDVVTREHLV 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + E ++DV+I LR K+ + G +YI+TV G GYV+RE Sbjct: 182 SQVWGYEEGTETNVVDVYIRYLRNKI-DVEGQDSYIQTVRGLGYVMRE 228 >gi|304393592|ref|ZP_07375520.1| two component transcriptional regulator [Ahrensia sp. R2A130] gi|303294599|gb|EFL88971.1| two component transcriptional regulator [Ahrensia sp. R2A130] Length = 216 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 127/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L + L+ ++ V GE+G L +DA+ILD+GL ++ G Sbjct: 1 MRILVVEDDRDLNRQLVSALEEASYVVDSASDGEEGHFLGDTEPYDAVILDVGLPELDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R S PV +L+ DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVLEKWRRGGRSMPVLLLTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ + I G + ++ V + G + LT E++++ L K +++ + HLYD Sbjct: 121 GHSSAEIEIGKVLLDTRQSRVFMDGTPVKLTSHEFRLLSYLMHHKGEIVSRTELIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LRKKL + + IETV G GY Sbjct: 181 QDFDKDSNTIEVFVGRLRKKLHS-----DVIETVRGLGY 214 >gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5] gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 228 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 132/223 (59%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ + + L E ++V G +G+++ + D ++LD+ + + GFE Sbjct: 4 RILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR LR + PV +L+ +E++V+GL +GADDY+ KPF EEL+AR+RA++RR G Sbjct: 64 ALRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKTG 123 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + DL ++ DA+ V G R+ LT KE++++ L L++++ ++ ++ Sbjct: 124 DDTSNHRLTFEDLVMDTDAREVIRGGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++V+I LR+K + GGK I+T+ G GY+LR Sbjct: 184 GYDYSGESNVLEVYIAMLRQK-TEEHGGKRLIQTIRGAGYILR 225 >gi|330988080|gb|EGH86183.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L + IILD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ ++D++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH I DL ++L ++ G R+ LT KE+ ++ +L+ R+ LTK ++D Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILTKTSIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219 >gi|317404461|gb|EFV84873.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 228 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ LA ++ L ++ V + G +G+ L +D I+LD+ L + GF Sbjct: 1 MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVNGLHLALEGAYDLIVLDVMLPGVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L A+R K TP+ +L+ ++ED+VRGL+ GADDY+ KPF EL+AR++A++RR R Sbjct: 61 GILAAVRANK-DTPILMLTARDAVEDRVRGLEGGADDYLIKPFAFSELLARVQALLRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL ++L + V G R+ LT KE+ ++ LL R+ L++ ++D Sbjct: 120 SQEPTVFRLADLELDLARRKVARGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +IDV + +LR KL + K + TV G GYVL Sbjct: 180 MNFDSDTNVIDVAVRRLRSKLDDPFEAK-LLHTVRGMGYVL 219 >gi|306845545|ref|ZP_07478114.1| DNA-binding response regulator [Brucella sp. BO1] gi|306273866|gb|EFM55693.1| DNA-binding response regulator [Brucella sp. BO1] Length = 225 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 124/224 (55%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57 MRI+LIEDD L ++ + +E V +V+ D D +E + D ++LDL L D Sbjct: 1 MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESASY---DLVLLDLMLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G LR LR STPV IL+ + I D+++GL +GADDY++KPF+ EL AR+ A+ R Sbjct: 58 QGLSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G+ LI G L ++L K+V G + LT +E+ ++E TL+K H Sbjct: 118 RYSGNPNPLIEIGGLQIDLAVKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY E E ++V + +LRKKL +A IETV G GY L Sbjct: 178 LYSFDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216 >gi|293604396|ref|ZP_06686803.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|311105155|ref|YP_003978008.1| response regulator 3 [Achromobacter xylosoxidans A8] gi|292817273|gb|EFF76347.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|310759844|gb|ADP15293.1| response regulator 3 [Achromobacter xylosoxidans A8] gi|317402710|gb|EFV83258.1| two-component system response regulatory protein [Achromobacter xylosoxidans C54] Length = 223 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD L H+++ L + + V G+ + +D ++LDL L + G Sbjct: 1 MRVLVIEDDTTLGHALQEFLADQGYAVDWLTEGDRVLGALAGQPYDLMLLDLNLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR PV IL+ IED+V GL +GADDY++KPF EL AR+RA RR Sbjct: 61 DVLRQLRQDGNQVPVLILTARDGIEDRVAGLDAGADDYVTKPFELPELAARVRAFGRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ LI G L + + V G R+ L+ +E ++E+L R +TK +N L Sbjct: 121 GQAQPLIEVGPLVFDTVGREVRANGQRLSLSVRELSVLEMLMARVGRVVTKRQIVNSLSA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V++ +LRK+L G I+TV G GY+L Sbjct: 181 WDADFSENAVEVYVYRLRKRLE---GTGASIQTVRGFGYML 218 >gi|229074576|ref|ZP_04207601.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228708534|gb|EEL60682.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 226 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I+L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223 >gi|254444774|ref|ZP_05058250.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198259082|gb|EDY83390.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 226 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 128/224 (57%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L IE L+ E V T G + ++ K + +DA++LD+ + ++ G Sbjct: 1 MKVLVVEDESKLTSLIEKGLRCEGIEVESTSSGLEALDQVKRFSYDAVVLDIMIHELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R A I TPV I++ +K+ GL +GADDY+ KPF +ELVAR+ A+ RRS Sbjct: 61 SVLKRMRAASIRTPVIIITARDMHNEKIEGLDAGADDYVVKPFFVDELVARLNAVWRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ DL+VNL + V G +I + KE+ ++ L + ++++ Sbjct: 121 GQGLDVLSVDDLTVNLMTREVTRGGVKIDMPTKEFNLLVFLMKAPGRVFNRVQIFENVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +PE ++DV+I +LR+K+ + K +ETV G GY +R + Sbjct: 181 FDFDPETNLVDVYIGRLRRKI-DQGDSKKLLETVRGVGYRIRRS 223 >gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185] gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185] Length = 231 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + + +K F+V V G +G+ L EFD +LD+ L D+ GF Sbjct: 7 RILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQEFDLAVLDVMLPDMDGFA 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR P+ L+ S++D V+GL G DDYI+KPF+ EE+VARIRA++RR++ Sbjct: 67 VTSRLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRRTKA 126 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ D+ V G I ++ E++++ L L ++K L+H++ Sbjct: 127 DDSDGPTVTVGDLELDDDSHEVRRAGRVIDVSPTEFKLLRYLMLNAGRVVSKAQILDHVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D E I++ +I LR+K+ + G + I T G GYVLRE Sbjct: 187 DYDFRGEAGIVESYISYLRRKI-DVDGLEPLIHTKRGVGYVLRE 229 >gi|329115641|ref|ZP_08244363.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001] gi|326695069|gb|EGE46788.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001] Length = 225 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 131/226 (57%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 MR+LL+EDD+ + + I L V + G+ G+ L +FD IILD L + G Sbjct: 1 MRVLLVEDDQTVRNFIAKGLAEAGHLVEQAEDGKSGLSLAASEKFDVIILDRMLPGGVEG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L+ LR TPV +LS ++ +++KV GL++G DDY++KPF+ EL AR+ A+VRR+ Sbjct: 61 LHILQTLRNQNNLTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRN 120 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R A Q+ + GDL ++L ++ V G +I L +E++++E L +T+ M L Sbjct: 121 RNEAQPQTRLTIGDLEIDLLSRNVRRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D +P+ +IDV I +LR+K+ + T+ GY+L+E Sbjct: 181 VWDYHFDPQTNVIDVHISRLRQKIDRPF-HHPLVHTIRNAGYMLQE 225 >gi|260431422|ref|ZP_05785393.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260415250|gb|EEX08509.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 225 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED++ LA + L+ +F V V GED ++ + +++DAIILDLGL D+ GF Sbjct: 1 MRLLLIEDNEKLALNTSASLRENSFAVDVVHTGEDALDAIRNFDYDAIILDLGLPDVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L L+ + TP+ I + ++++++RGL SG+DDY+ KPF EL+ARIRA++RR Sbjct: 61 DLLHQLKQIRNETPIIICTARDALDERLRGLNSGSDDYVVKPFAFAELLARIRAVLRRP- 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+A +++ +G++ + ++V + G + +E ++EL R +K N LY Sbjct: 120 GNALGMVLGSGNVRFDTVDRSVTIGGRPARFSARELALLELFLTRAGRVQSKAAIENALY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 P I+V +LRKKL+ I + G GY+L Sbjct: 180 GFDAPPTPNAIEVLTHRLRKKLTEYEADVT-IHNLRGVGYLL 220 >gi|238755145|ref|ZP_04616491.1| Transcriptional regulatory protein basR/pmrA [Yersinia ruckeri ATCC 29473] gi|238706592|gb|EEP98963.1| Transcriptional regulatory protein basR/pmrA [Yersinia ruckeri ATCC 29473] Length = 220 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + L L E + + L ++ +ILDLGL D G Sbjct: 1 MKLLIVEDDDLLQKGVALALTREGYACDCAGTAAEANSLIITSQYSMVILDLGLPDQDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R IS PV IL+ ++ED+V GL +GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 TLLRQWRRQSISLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + + DLS+NL + V ++ + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GQSDNFLQQDDLSLNLSTQQVYLRQQPLEITPKEFAILSRLIMRAGHTVNRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D+ ++V + LR+KL GK I TV G GY L Sbjct: 181 WQDDLGSNTLEVHVHNLRRKL-----GKERIRTVRGIGYRL 216 >gi|311696375|gb|ADP99248.1| DNA-binding response regulator [marine bacterium HP15] Length = 226 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 135/227 (59%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L+IEDD+ +A+ + LK +F V G++G+ + ++D +I+D L + G Sbjct: 1 MKALVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRMLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R PV ILS + ++D+V GL+ G DDY++KPF+ EL+ARI ++VRR+R Sbjct: 61 SIIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNR 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ V DL ++L A+TV+ G I + +E++++E L +T+ M L + Sbjct: 121 QSAETETVLRVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV I +LR K+ + ++T+ G GY+LRE A Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKI-DKEFDTPLLQTIRGAGYMLRETA 226 >gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 228 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 135/227 (59%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ LA +E+ LK E + V G G++ +FD I+LDL L ++ G E Sbjct: 3 RILIIEDEENLAKFVEMELKHEGYETDVELDGRAGLQAALNQDFDLILLDLMLPELNGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K +TP+ I++ S+ D+V G GADDYI KPF EEL+AR+RA++RR Sbjct: 63 VARRVRELK-NTPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALLRRINI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S Q+ + DL++ + + V I+LT +EY+++ +L N ++++ L Sbjct: 122 EDSSNKEHQTTVQYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + E ++DV+I LR K+ + G K+YI+TV G GYV+R Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227 >gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 230 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 133/228 (58%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E + + D G G+E ++D I+LDL L ++ GFE Sbjct: 5 KILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 V R LR K TP+ +++ S D+V GL GADDYI+KPF EEL+AR+RA RR Sbjct: 65 VARRLRKEK-DTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123 Query: 121 GHAQSLIVTG---DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT--TLTKEMFL 175 GHA DL ++ +TV I LT +EY + LL+L +N +T+E + Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDL--LLTLMQNVGDVVTREHLV 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + E ++DV+I LR K+ + G +YI+TV G GYV+RE Sbjct: 182 SQVWGYEEGTETNVVDVYIRYLRNKI-DVEGQDSYIQTVRGLGYVMRE 228 >gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353] gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353] Length = 229 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 133/228 (58%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ L ++ V GE+ +E+ K E+D ++LD+ L + GFE Sbjct: 4 KVLVVDDERLIVKGIKFSLVQDDMEVDCAYDGEEALEMAKKTEYDIVLLDVMLPKMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RRS Sbjct: 64 VCQRIREFS-NMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSSK 122 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + + L ++ D++ V V+ + LT KEY ++ELLS N ++E LN Sbjct: 123 RATEDEKKKIFEKNGLKIDCDSRRVFVEDKEVKLTAKEYDLLELLSFHPNKVYSRENLLN 182 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ G D P +V+ +DV I +LR+K+ G YI T WG GY ++ Sbjct: 183 IVW-GYDYPGDVRTVDVHIRRLREKIEKNPGEPLYIHTKWGVGYYFQD 229 >gi|190576178|ref|YP_001974023.1| putative two-component system response regulator [Stenotrophomonas maltophilia K279a] gi|190014100|emb|CAQ47739.1| putative two-component system response regulator [Stenotrophomonas maltophilia K279a] Length = 219 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD ALA + +L+ + V+V G E+ + + A I+DLGL + G Sbjct: 1 MRILLAEDDAALAQRLVPLLEQAGYVVHVVADGRQAEEIGQIEDLQAAIVDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R S PV +L+ DK+ G +GADDY++KPF +ELV R+RA++RRS Sbjct: 61 SVIERWRGNGRSFPVLVLTARGRWHDKLAGFDAGADDYLTKPFQADELVLRLRALIRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + G L ++++A E+ G + L+ +E++++ + ++ ++D Sbjct: 121 GHASPRLHCGPLQLDVNAGRFELDGQALSLSPQEFRLLSYFIHHSGQVIGRDRLGEQVFD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G +P+ +DV + ++R+KL G + I+TV G+G+ L Sbjct: 181 GGHDPDSNALDVLLGRVRRKL-----GIDLIQTVRGQGWRL 216 >gi|126652917|ref|ZP_01725060.1| Two-component response regulator ycbL [Bacillus sp. B14905] gi|126590337|gb|EAZ84458.1| Two-component response regulator ycbL [Bacillus sp. B14905] Length = 230 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD+A+ + L E F V + GE+ ++ C FD +ILD+ + + G EV Sbjct: 5 ILLVEDDEAIREMVANFLLLEGFEVTTANNGEEALQYCLNQTFDLVILDIMIPKLNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+ +R + + P+ I+S S DK GL GADDYI+KPF+ E AR++A++RR+ Sbjct: 65 LKVIR-EQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATKY 123 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H Q ++V GDL +++ ++ G + LT KE+ +++L +N TKE Sbjct: 124 AGQTDHKQDVVVIGDLKIDIVNFSINKSGKEVKLTSKEFAILKLFVTNRNRVFTKEQIYQ 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + II+V I +LR+K+ + YI+T+WG GY Sbjct: 184 LIWKDAYYGDENIINVHIRRLREKIEDDPSTPQYIKTLWGIGY 226 >gi|111020130|ref|YP_703102.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110819660|gb|ABG94944.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 235 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 135/236 (57%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA+ + L+ E F V GEDG+ FDAI+L++ L + G+ Sbjct: 1 MRVLVVEDEARLANVVRRGLELEGFVVVTAATGEDGLWHATEDTFDAIVLNIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++RALR +I TP+ +L+ D+ GADDY+ KPF+ LVAR+RA+VRR+ Sbjct: 61 EIVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ GDLS++ + V + LT +E+ ++E L +T LTK L +++D Sbjct: 121 PARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRNPDTALTKGEILRNVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 + + I++V++ LR+K+ +A G + I+TV G GY R + ET E E+ Sbjct: 181 AHYDGDENIVEVYVGYLRRKI-DAPFGAHTIDTVRGVGY--RLTTRPETPESPESP 233 >gi|170017835|ref|YP_001728754.1| response regulator [Leuconostoc citreum KM20] gi|169804692|gb|ACA83310.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 229 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 137/222 (61%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIEDD LA +I L+ + +V V G DG + +D II DL L G Sbjct: 5 IKILLIEDDANLADNIVGFLQ-DFADVNVVTNGLDGEYEGQESPYDLIICDLMLPGENGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR I TPV IL+ SS++DK+ G GADDY++KPF +EEL+ R++A++RR+ Sbjct: 64 EVIKHLRDNDIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRAG 123 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ ++I GD+ +NL+ + V+V G + L GKE+ ++ L+ KN +T++ + ++ Sbjct: 124 VYSEDNMITVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++++++ LR+KL A G + I+T+ G++L Sbjct: 184 GIDSDTTINVVNIYLNNLRRKLE-AVGQNDLIKTLRNIGFIL 224 >gi|223935938|ref|ZP_03627853.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895539|gb|EEF61985.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K A I L++E+F V V+ G + + L FDAI+LD+ L G Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR K TPV +LS + ++V GL +GADDY+ KPF EL+AR+R+I RRS Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ DL+++ + + G LT +EY+++E L + L ++D Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +P ++DV+I +LR+K+ K + TV GYV++E + Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPK-LLHTVRNVGYVMKEQS 224 >gi|332799978|ref|YP_004461477.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697713|gb|AEE92170.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 132/225 (58%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA ++ +LK N+ V GE G++ +D IILD+ L + G Sbjct: 1 MRILIVEDELHLAEALTQILKKNNYTVDAVHDGESGLDNALSGIYDLIILDIMLPKMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R +I+TPV +L+ I DKV GL SGADDY+ KPF EEL+ARIRA+ RR + Sbjct: 61 SILKHIRKQEIATPVILLTAKGEISDKVMGLDSGADDYLPKPFATEELLARIRALSRR-K 119 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G S + GD + LDA +++ + LT KE +++E L LRKN +KE+ + Sbjct: 120 GDILPDSSLKYGD--IELDALNLKLSKDSKDVKLTLKESELLEFLMLRKNIVTSKELIIE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ E E ++V+I LRKKLS K I TV G GY+L Sbjct: 178 KLWGFDSEVEPNNVEVYISFLRKKLS-FLNSKVSIVTVRGVGYIL 221 >gi|49081818|gb|AAT50309.1| PA2809 [synthetic construct] Length = 227 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L F V ++D G +G +L ++D +ILD+ L G+ Sbjct: 1 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR++R A ++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + + DL ++L + V+ QG RI LT KE+ ++ELL R L K + + ++ Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + + +I+V I +LR K+ + + TV G GYVL E Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDY-PQRLTHTVRGMGYVLEER 224 >gi|260219796|emb|CBA26687.1| Transcriptional regulatory protein qseB [Curvibacter putative symbiont of Hydra magnipapillata] Length = 222 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 125/228 (54%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRILL EDD L + L+ F V D DG+ + ++ A +LDLGL Sbjct: 1 MRILLAEDDSMLGDGLRAGLRQMGFQV---DWVRDGVAAERELRAVDYVAAVLDLGLPGK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL+ALR A+ +TPV +L+ ++ D++RGL +GADDY+ KP + EL AR+R++VR Sbjct: 58 DGMEVLQALRAARNTTPVLVLTARDAVPDRIRGLDAGADDYVLKPVDLHELAARLRSLVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G AQ ++ G LS++ A+ V + L+ +E+ ++ L L++E Sbjct: 118 RSHGVAQDMLQAGALSLDPSARQVTWMDEAVPLSTREFDLLHTLMRSAGRVLSREQLEQQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +Y E E I+V I LR+KL + I+TV G GY+L A Sbjct: 178 MYSWGLEVESNTIEVHIHHLRRKLQ-----ADVIQTVRGVGYMLNPKA 220 >gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED++ L I LK E+++V GE+ ++ +DA+ILD+ + + G Sbjct: 1 MRILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYLAAAPYDAVILDIMMPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R +TPV +L+ S+ED+V+GL +GA+DY+ KPF EEL+AR+R +VR++ Sbjct: 61 SVLRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRKTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L V++D V G I L+ KE+ ++ + + L++E HL++ Sbjct: 121 AVQKTCYEVGGLEVHVDTHQVLRNGKEIALSSKEFALLRYMVQNEGIVLSREKLEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++DV+I LRKK+ K I TV G GYVLR N Sbjct: 181 YDYMGSSNVVDVYIRYLRKKIDEGFEPK-LIHTVRGAGYVLRVNG 224 >gi|315647246|ref|ZP_07900359.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277448|gb|EFU40777.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 232 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 128/226 (56%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD + IE L+ ++++V GE+ + L +FD I+LDL L I G + Sbjct: 4 RILLVEDDHDIHQLIESQLQQDHYHVDSAHDGEEAVALFHSGKFDLILLDLMLPKINGMD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR R + PV I+S S DK GL GADDYISKPF+ EL AR++A +RR+ Sbjct: 64 LLRHFRESS-KVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +A++ +I DL ++L + +V+V+GH + LT KE+ +++LL + TKE Sbjct: 123 YAETDSKSAEPPVISFKDLILDLHSFSVKVRGHHVPLTSKEFHILKLLMTNHSRVFTKEQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ +I+V I +LR+K+ YI T+WG GY Sbjct: 183 IYQFIWEDDYYGNENVINVHIRRLREKIEEDPSTPQYIRTIWGIGY 228 >gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ + K E+D I+LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALVFAKQKEYDVILLDVMLPRMNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R + PV +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR Sbjct: 64 VCQQIREFS-NMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTR 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S A IV GDL ++ +++ V + I+LT KE+ ++ELL L N ++E LN Sbjct: 123 KASEAEASKTIVFGDLKIDSESRRVFISEKEINLTAKEFDVLELLVLNPNKVYSRENLLN 182 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G D P +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 IVW-GYDYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYFK 228 >gi|187919922|ref|YP_001888953.1| two component heavy metal response winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718360|gb|ACD19583.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 133/221 (60%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A ++ L+ + V V + G G+ L E+D I+LD+ L I G+ Sbjct: 1 MRILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR AK +TPV L+ ++D+VRGL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 TVVKTLR-AKRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI GDL ++++ + V+ G RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ + K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRTKIDDDFPVK-LIHTVRGVGYVL 219 >gi|22537765|ref|NP_688616.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 2603V/R] gi|25011712|ref|NP_736107.1| DNA-binding response regulator CsrR [Streptococcus agalactiae NEM316] gi|76788698|ref|YP_330242.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909] gi|76799420|ref|ZP_00781570.1| CsrR [Streptococcus agalactiae 18RS21] gi|77405803|ref|ZP_00782887.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B] gi|77408493|ref|ZP_00785231.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1] gi|77411918|ref|ZP_00788249.1| DNA-binding response regulator CsrR [Streptococcus agalactiae CJB111] gi|77414229|ref|ZP_00790391.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515] gi|22534656|gb|AAN00489.1|AE014265_18 DNA-binding response regulator CsrR [Streptococcus agalactiae 2603V/R] gi|24413252|emb|CAD47331.1| Unknown [Streptococcus agalactiae NEM316] gi|76563755|gb|ABA46339.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909] gi|76585229|gb|EAO61837.1| CsrR [Streptococcus agalactiae 18RS21] gi|77159718|gb|EAO70867.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515] gi|77162015|gb|EAO72995.1| DNA-binding response regulator CsrR [Streptococcus agalactiae CJB111] gi|77172935|gb|EAO76066.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1] gi|77175590|gb|EAO78375.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B] gi|319745623|gb|EFV97924.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 133/230 (57%), Gaps = 13/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L E ++V V G +G++ +FD I+LDL L ++ GFE Sbjct: 4 KILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R L+ K +T + +++ S+ D V GL GADDYI KPF EEL+AR+RAI RR Sbjct: 64 ITRRLQAEK-TTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEI 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +G + S DLS+N ++ I LT +E+ ++ +L N +T+E Sbjct: 123 ETKTKEKGDSGSF---RDLSLNTHNRSAMRGDEEISLTKREFDLLNVLMTNMNRVMTREE 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L H++ E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 180 LLEHVWKYDVAAETNVVDVYIRYLRGKI-DIPGRESYIQTVRGMGYVIRE 228 >gi|332662422|ref|YP_004445210.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332331236|gb|AEE48337.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 127/227 (55%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D+ ++ + I+ L EN+ V V G G+++ FD IILD+ L D G E Sbjct: 3 KILLVDDEVSVVNFIKKGLADENYEVSVAFDGSTGVKMALEAPFDLIILDIMLPDKNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R I TP+ L+ + + E+ GL GADDY+ KPF EL ARI+A++RR + Sbjct: 63 VCKEIRFGNIQTPILFLTALGASENVALGLDMGADDYLVKPFKFIELNARIKALIRRGKS 122 Query: 121 --GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H Q ++ DL V+ DAKTVE I LT EY+++ +L K L++ L Sbjct: 123 NDSHQQPHTIYTIADLKVDDDAKTVERNASFISLTATEYRLLLVLIKNKGRVLSRVDLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D E ++DV+I LRKK+ A K I TV G GYVL+E Sbjct: 183 SAWDINFNMETNVVDVYINYLRKKMDTDANNK-LIHTVVGMGYVLKE 228 >gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440] Length = 252 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + L+ E + V G + + ++ DA++LD+ L D+ GF Sbjct: 26 VRVLVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDVMLPDLDGF 85 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VLR LR + PV L+ ++ED+V GL G DDY++KPF+ EE++AR+RA++RRS Sbjct: 86 AVLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSG 145 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++++ GDLS++ D+ V G I+LT E++++ L L+K L+ Sbjct: 146 FAVTARQEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILD 205 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ G I T+ G GYVL+ Sbjct: 206 RVWNYDFGGQANVVELYISYLRKKID--VGRAPMIHTLRGAGYVLK 249 >gi|120597039|ref|YP_961613.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|120557132|gb|ABM23059.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] Length = 219 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L + L + V D G DG L + F+A+ILDLGL PG Sbjct: 1 MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R ++ PV IL+ + ++V GL++GADDY+ KPF+ EEL+AR+ ++RR Sbjct: 61 QVLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +++ +S+++D + V V G I LT EY+++ L + + ++K +Y Sbjct: 121 GRADNVLQHAGVSLDVDKQAVTNVDGAVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+V++ +LR++L GK+YIET G+GY L+E Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKE 219 >gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 129/223 (57%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ LA IEL LK E +N+ V + G G+ + D I+LD L I G E Sbjct: 5 RILVVEDEAKLAQFIELELKYEGYNITVVNDGLSGLTTARESNPDLILLDWMLPGISGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR P+ +L+ I D+V GL +GADDYI KPFN EEL+AR+RA +RR++ Sbjct: 65 ICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNKE 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ DLS+N + + V +G+R I LT KE+ ++E L L+++ L ++ Sbjct: 125 ENPDLLQFLDLSLNRNTREV-FRGNRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL A K I+TV G GYVLR+ Sbjct: 184 YDFMGDSNIIEVYVRYLRLKLE-AEQEKRLIQTVRGVGYVLRD 225 >gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 227 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L E F V V G D + +D I+LDL L + GF Sbjct: 1 MRVLVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQATEITYDVIVLDLMLPSLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A +PV +LS ++ D+VRGL GADDY+ KPF+ +EL ARIRA++RR Sbjct: 61 EVCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRRG- 119 Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +++ D L ++ +TV G + L+ KE+ ++E L L + L H++ Sbjct: 120 AHERPVVLEVDGLRLDPAGRTVSRDGVPLDLSPKEFALLEYLMRHPGEALRRTAILEHVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + ++D ++ LR+K+ G + +ETV G GY LR +A+ Sbjct: 180 DFAYDGTSNVVDQYVAYLRRKIDKPF-GTSQLETVRGAGYRLRTSAR 225 >gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 223 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I ++ + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKEIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 223 >gi|323494536|ref|ZP_08099641.1| two-component system response regulator QseB [Vibrio brasiliensis LMG 20546] gi|323311263|gb|EGA64422.1| two-component system response regulator QseB [Vibrio brasiliensis LMG 20546] Length = 219 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I ++S +V +L +DGI+ E+DAI+LDLGL + Sbjct: 1 MKILVVEDEPRLGEQI---VESLEQTGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ G+LS++ V QG I LT EY+++ +++ + H Sbjct: 118 RASGNASPVMQIGNLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + I+VFI ++RKK++ I+TV G GY L Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PKVIKTVRGLGYQL 216 >gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1175 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 127/228 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ A ++ L S+N+ V G++G EL + + +D I+LD+ L + G Sbjct: 1 MKILVVEDDELTAQALVATLASQNYTVETASDGQEGWELTEAFAYDLILLDVTLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR P+ +L+ ++ DK GL +GADDY+ KPF EEL ARIRA++RR++ Sbjct: 61 TLCQRLRSQGHQMPILLLTARNTSHDKALGLDAGADDYVVKPFEPEELAARIRALLRRNQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +QS++ GDL + + V + + LT KEY ++EL + L +L+ Sbjct: 121 LTSQSVLEWGDLVFDPISCEVTYKTKPLSLTAKEYALLELFLRNSRRVFSCGAILENLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + P + + I LR+KL A + IETV+G GY L+ + E Sbjct: 181 FEEVPSDEAVRTHIKGLRQKLKAAGAPTDMIETVYGIGYRLKPKERRE 228 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++DD + + +L+ + EL + D +ILD+ + I G E Sbjct: 513 RVMVVDDDPKMLAIVRSLLEPWGLKIIALADPRQFWELLETTSPDLLILDIEMPQISGTE 572 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA-------RI 112 + + +R + S P+ L+ S E + GADD++SKP ELV RI Sbjct: 573 LCQIVRNDSSWSSLPILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLERI 632 Query: 113 RAIVRR--SRGHAQSLIVTGDLSVNL 136 RA+ R R A++ + +L + L Sbjct: 633 RAVKREMGDRQQAKAGLTRSELRLQL 658 >gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium 6_1_63FAA] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ E V GE+ +E K E+D I+LD+ L + G E Sbjct: 4 RVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEKAKEKEYDMILLDIMLPKLTGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR R Sbjct: 64 VCQQIREFS-SVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRMRK 122 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +V+GDL ++ + + V + G I+LT KE+ ++ELL+ N ++E LN Sbjct: 123 EEAKESFGKTLVSGDLKLDCEGRRVFIAGKEINLTAKEFDVLELLAKNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 LVWGYEYPGDVRTVDVHIRRLREKIEAVPSDPKYVHTKWGIGYYFQ 228 >gi|291062157|gb|ADD73560.1| two-component heavy metal response regulator [Achromobacter sp. AO22] Length = 230 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 2/230 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ A + L F V + G DG L +D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R+LR A PV L+ S++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q I DL ++L + G RI+LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 D + + +IDV I +LR K+ +A K I TV G GY L D T Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDAFNPK-LIHTVRGMGYTLDAPDDDLT 229 >gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI] gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ L ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMLPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223 >gi|254253753|ref|ZP_04947070.1| Response regulator [Burkholderia dolosa AUO158] gi|124898398|gb|EAY70241.1| Response regulator [Burkholderia dolosa AUO158] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD ++ S+ L + V G G +E+ A++LDLGL + G Sbjct: 1 MRLLLVEDDLSIGQSLLRALSDAGYGVEWVRDGAAGHASIDAFEYTAVLLDLGLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R + P+ IL+ ++ +V+GL GADDYI+KPF EL+AR+RA++RR Sbjct: 61 DVLRAVRASHKEVPILILTARDDVDTRVQGLDLGADDYIAKPFQVRELLARVRAVMRRKA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A S + L ++LD +T+ +G + LT +E+ ++ R T L++E LY Sbjct: 121 GYAASRLGDDSLCLDLDKRTLNCRGVELPLTSREFALMLAFLERPGTILSREQLEEKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E IDV I +RKK G++ I V G G+ + Sbjct: 181 WGREIESNAIDVLIYSIRKKF-----GQSVIRNVRGIGWTV 216 >gi|237797233|ref|ZP_04585694.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020083|gb|EGI00140.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 222 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D + +D I+LDLGL + G Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RRS Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + + L+++ + V G I LT E++++ L L+K HLY Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 DG +E + +I+V + LR+KL G+ IET G+GY+ Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVIETRRGQGYL 216 >gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125] gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125] Length = 222 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 133/224 (59%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K +A ++L L+ E + G DG+E + + +D ++LD+ L ++ G E Sbjct: 3 RILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAWDLVLLDVMLPELSGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RS 119 VLR +R+ TP+ +L+ +SI DKV GL GA+DYI+KPF EEL+AR+RA +R ++ Sbjct: 63 VLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRTVQT 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + ++ +L++N + V+ I LT KE++++ K L++E L +++ Sbjct: 123 RERVEDTLMFQELTINEKTRDVQRGNETIELTPKEFELLVFFIKNKGQVLSREQILTNVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +IDV++ LRKKLS ++TV G GY L+E Sbjct: 183 GFDYYGDTNVIDVYVRYLRKKLSLTEA----LQTVRGVGYRLKE 222 >gi|15596634|ref|NP_250128.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107100871|ref|ZP_01364789.1| hypothetical protein PaerPA_01001901 [Pseudomonas aeruginosa PACS2] gi|116049382|ref|YP_791815.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218892691|ref|YP_002441560.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254234536|ref|ZP_04927859.1| hypothetical protein PACG_00396 [Pseudomonas aeruginosa C3719] gi|254239787|ref|ZP_04933109.1| hypothetical protein PA2G_00413 [Pseudomonas aeruginosa 2192] gi|296390196|ref|ZP_06879671.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313106435|ref|ZP_07792666.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9947387|gb|AAG04826.1|AE004573_5 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115584603|gb|ABJ10618.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126166467|gb|EAZ51978.1| hypothetical protein PACG_00396 [Pseudomonas aeruginosa C3719] gi|126193165|gb|EAZ57228.1| hypothetical protein PA2G_00413 [Pseudomonas aeruginosa 2192] gi|218772919|emb|CAW28731.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310879168|gb|EFQ37762.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 132/230 (57%), Gaps = 3/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L + F V + D G DG L E+D I+LD+ L + G+ Sbjct: 1 MRVLIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVMLPGVDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR + TPV +L+ +ED+VRGL+ GADDY+ KPF+ ELVAR++A+ RR Sbjct: 61 GVLRALR-ERRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGG 119 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + S + DLS++L ++ V R+ LT KEY ++ +L+ R L+K ++ Sbjct: 120 NHESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 D + + +++V I +LR KL K + T+ G GYVL A E+ Sbjct: 180 DINFDTDTNVVEVAIKRLRAKLDGPFENK-LLHTIRGMGYVLENRALAES 228 >gi|229825404|ref|ZP_04451473.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC 49176] gi|229790408|gb|EEP26522.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC 49176] Length = 236 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ L S+ L+ + + V GE+ E+ +D IILDL L + G Sbjct: 13 MRILVVEDEQELCESVAKGLRLDGYEVDTCFDGEEAWEIISVESYDLIILDLNLPKLDGM 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R T V ILS ++DK+ GL SGA+DY+ KPF+ EEL AR+R++ RR Sbjct: 73 EVLKNIRAEDNETSVLILSARGGLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRRV 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+LS++ A+TV +G + LT KE ++E L L + +++E ++H++D Sbjct: 133 VQNNLVLECGELSLDTKARTVTAKGEELSLTRKELAILEYLILHREHPVSQEELISHVWD 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G + I V I LRKKL A G V G+GY++ Sbjct: 193 GSVDSFSNSIRVHISALRKKLRTALGYDPITNRV-GQGYMI 232 >gi|167760385|ref|ZP_02432512.1| hypothetical protein CLOSCI_02759 [Clostridium scindens ATCC 35704] gi|167662058|gb|EDS06188.1| hypothetical protein CLOSCI_02759 [Clostridium scindens ATCC 35704] Length = 231 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 132/227 (58%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + +L+I+D+ A+ ++ +LK E V G+ +++ K FD I+LD+ + + GF Sbjct: 4 ISVLIIDDETAVQKAVSAVLKREQMEVSCAGSGQFALDILKENTFDIILLDVIMPEQDGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR +I TPV +LSG + +V GL GADDYI+KPF+K LV++I+AIVRR+R Sbjct: 64 DLLSELRRRRIYTPVILLSGKTEDAAQVEGLGLGADDYITKPFSKTVLVSKIQAIVRRTR 123 Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +A QS I+ G +++++++T+ G I LT KE+ ++ L T +K+ Sbjct: 124 QYATTAESIQSPILKGPFTLHMNSQTIFKNGKEIALTSKEFALLCLFMDHPGHTFSKQEL 183 Query: 175 LNHLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ DG D I V+I KLR K+ + +I TVWG+GY Sbjct: 184 FQEVWKNDGSDN---NTILVYIKKLRSKIEDDPSQPFHIRTVWGKGY 227 >gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 220 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 133/222 (59%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ LA IEL L+ EN++V + G+ G+E +D I+LDL L +I G E Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + +TP+ I++ S DKV GL GADDYI KPF+ EEL+ARIRA++RR Sbjct: 63 ICRQIRQNQ-TTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRRQ-- 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++LI + ++ DA V V G + LT EY ++ LL +N L +E + ++ Sbjct: 120 PQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E ++DV+I LR KL G IETV G GYV+R+ Sbjct: 180 DTEVETNVVDVYIRYLRNKLK-PFGKDKCIETVRGVGYVVRQ 220 >gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 132/228 (57%), Gaps = 17/228 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIPG 59 +L+IED+K +A IEL L +E Y T++ DG+ L KF E D +ILDL L + G Sbjct: 7 VLVIEDEKDIARFIELELAAEG---YATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R +TP+ IL+ +I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR Sbjct: 64 LEVARRIRKTS-NTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRAHLRRV 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL +NLD + + G R+ L+ KE++++ELL+ ++ ++ Sbjct: 123 NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW 182 Query: 180 DGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE ++DV+I LR+KL G + I TV G GYVLRE Sbjct: 183 -----PEYTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLRE 224 >gi|27382389|ref|NP_773918.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355560|dbj|BAC52543.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 230 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD A + L + + V + G + + ++ I +D L DI G Sbjct: 7 RILVVEDDPETAGQLVEELTTSGYEVDLAATGREALSHGAARDYAVITIDRMLPDIDGIT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR I+ P I+S + ++D+VRGL++G DDY+ KPF+ EL+AR+ A+ RRS Sbjct: 67 VMRQLRDDGIAAPFLIISALGEVDDRVRGLRAGGDDYLVKPFSFVELLARLEALGRRSET 126 Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++L+ GDL+++L A+ +G +I L +E+Q++E L + +++ M L H++D Sbjct: 127 IAKETLLRVGDLAIDLIARNASRRGRKIPLLPREFQLLEYLVRNEGRVVSRAMLLQHVWD 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P IIDV++ ++R+K+ +A I T+ G GY LR Sbjct: 187 LHFDPSTNIIDVYVGRVRRKVDDAQ-AYPLIHTIRGIGYCLR 227 >gi|209524098|ref|ZP_03272649.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209495473|gb|EDZ95777.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 230 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 8/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A +E L++ F + + G+D +E + FD +ILDLGL D GF+ Sbjct: 3 RILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLEQACSHNFDLLILDLGLPDRDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +L+ LR + P+ IL+ + DKV GL++GADDY++KPF EL+AR+RA +R Sbjct: 63 ILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQPS 122 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + T ++ +NL + V+V + L+ KE+ ++E L++E L+ + Sbjct: 123 KNADDDKTLSTANICLNLYTREVQVADRTLQLSAKEFLLLETFLRHPEQVLSREQLLDQV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P I+DV++ LRKKL G + IETV G GY L Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKL-----GSDRIETVRGMGYRL 220 >gi|148256853|ref|YP_001241438.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146409026|gb|ABQ37532.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 221 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L+ + L++ + V +D GE L ++ A++LDLGL + G Sbjct: 1 MRVLLVEDDPRLSSDLSRTLQAAGYLVETSDNGEQAWFLGDTEDYGAVVLDLGLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A PV IL+ +S ++V G+ +GADDY+ KPF EEL+AR+RAIVRRS Sbjct: 61 SVLKRWRTAGRHMPVLILTARASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ +GDL ++ V + G + L+ EY++I L + + + ++Y Sbjct: 121 GHAAPVLSSGDLMLDERQMKVSLAGVPVPLSQLEYRLIAYLLRQSGRVVPQHELEENVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + ++V I ++RKKL G IET G GY++ E A+ Sbjct: 181 LGHDHDSNALEVLIRRVRKKL-----GAEIIETRRGFGYMIPETAE 221 >gi|312868775|ref|ZP_07728967.1| response regulator ArlR [Lactobacillus oris PB013-T2-3] gi|311095761|gb|EFQ54013.1| response regulator ArlR [Lactobacillus oris PB013-T2-3] Length = 228 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 136/227 (59%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ LA+ + L LK E + V G G++ +FD I+LDL L ++ G E Sbjct: 3 RILIIEDEENLANFVNLELKHEGYETDVELDGRAGLDAALSQDFDVILLDLMLPELNGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K TP+ I++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 VARRVRELK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ + DL++ + + V I+LT +EY+++ +L N ++++ L Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + E ++DV+I LR K+ + +G K+YI+TV G GYV+R Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRSGEKSYIQTVRGTGYVIR 227 >gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676] gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676] Length = 228 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G + L+ K+Y+++E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 228 >gi|27367654|ref|NP_763181.1| DNA-binding response regulator [Vibrio vulnificus CMCP6] gi|27359226|gb|AAO08171.1| DNA-binding response regulator [Vibrio vulnificus CMCP6] Length = 218 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L S+ L + V + G K +F A+ILDL L DI G Sbjct: 1 MRLLLIEDDTLLGQSMVTSLSRHGYTVDWLEKGSGVTSALKTEDFTAVILDLTLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R A S PV IL+ I+D+V+GL GADDY+ KPF EEL+AR+R ++RR Sbjct: 61 DVLRNIRSAGFSLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G+LS++L +++ Q + LT E++++ L ++K+ L+ Sbjct: 121 GSATEVIEVGELSLSLSEQSIRYQEVVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D I+V I LRKK N I+ + G GY++ Sbjct: 181 WDDSASDNAIEVHIHNLRKKAPNVP-----IKNIRGVGYII 216 >gi|308068988|ref|YP_003870593.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858267|gb|ADM70055.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 222 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/222 (40%), Positives = 132/222 (59%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+K LA IEL LK E++ V V G G+E E+D I+LDL L I G E Sbjct: 3 KILLIEDEKNLARFIELELKHESYEVTVEYEGRKGLESALSEEWDIILLDLMLPGINGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K TP+ +L+ + DKV GL SGADDYI KPF EEL+AR+R+++RRS Sbjct: 63 VCRRIRKTK-QTPIIMLTARDGVMDKVMGLDSGADDYIPKPFAIEELLARMRSLLRRSGF 121 Query: 122 HAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S +T + L ++ +A+ + I LT +E+ ++ +L +T+E L ++ Sbjct: 122 VEDSKQITYNGLVLDSEARILTKDQQIIELTKREFDLLSILMHNIGRVMTRERLLELIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR K+ + G ++I+T+ G GYV+R Sbjct: 182 YDSEVETNVVDVYIRYLRSKI-DEPGEASFIQTLRGLGYVIR 222 >gi|332186744|ref|ZP_08388486.1| response regulator [Sphingomonas sp. S17] gi|332013077|gb|EGI55140.1| response regulator [Sphingomonas sp. S17] Length = 230 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + A + L + V G DG+ L FD II D L + G Sbjct: 4 KILIVEDDASTAAYVAKGLAEAGYAVEQCGDGRDGLFLASEGIFDLIIADRMLPRLDGLA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ A+R A ISTPV ILS +++++D+V GL++GADDY+ KPF+ EL ARI A+VRRS Sbjct: 64 MVSAIRAAGISTPVLILSALATVDDRVDGLKAGADDYLCKPFSFAELSARIEALVRRSDR 123 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A ++ + GDL ++L A+TV G I + +E+ ++E L+ +T+ M L Sbjct: 124 AASEPTRTKLSVGDLEIDLLARTVTRAGKLIPVGAREFNLLEFLARHAGQVVTRTMMLEK 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ +P ++DV I +LR+KL G + TV G GY L Sbjct: 184 IWNYHFDPGSNVVDVHIGRLRRKLEEGF-GTPILHTVRGAGYRL 226 >gi|77408155|ref|ZP_00784901.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77173255|gb|EAO76378.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 223 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L SI +LK ++++V GE+ ++ E+D IILD+ + + GF Sbjct: 1 MKILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ LR + +L+ ++ED++ GL GADDY+ KPF EL+ARIRA++RR+ Sbjct: 61 TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTN 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S I D+++NL K V + I LT KEY+++E L+ ++ L++ H++ Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E IIDV I LR+KL N G + I+T G GYV+ Sbjct: 181 DYDYYGESNIIDVLIKNLRRKLDNNRDG-SLIKTKRGLGYVI 221 >gi|320450802|ref|YP_004202898.1| DNA-binding response regulator [Thermus scotoductus SA-01] gi|320150971|gb|ADW22349.1| DNA-binding response regulator [Thermus scotoductus SA-01] Length = 217 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 138/223 (61%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD + ++ L+++ + V E+ + L + + +D ++LD+ L + GF Sbjct: 1 MRLLVVEDDPRVGALVQEALEADGYAVDWAKSAEEALGLVRAFPYDLVVLDVMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L ALR + PV +L+ + EDKVRGL+ GADDY++KPF+ EL AR+RA++RR+ Sbjct: 61 TFLEALR-RQHKLPVLMLTARDATEDKVRGLEQGADDYLTKPFHLRELRARVRALLRRAH 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +L+ G L+++L+ K V +G + L+G+EY ++E L+L +E+ L ++ Sbjct: 120 GEAANLVRRGRLTLDLEGKRVYWEGKEVRLSGREYALLEFLALNAGGVFPREVLLEKVWA 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G + + K++DV+I +LR+KL G+ IET G GY RE Sbjct: 180 GEEGVDPKVVDVYIYRLRQKL-----GQGAIETERGLGYSFRE 217 >gi|22538256|ref|NP_689107.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25012116|ref|NP_736511.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76798542|ref|ZP_00780775.1| Two-component response regulator czcR [Streptococcus agalactiae 18RS21] gi|77413189|ref|ZP_00789387.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22535169|gb|AAN00980.1|AE014287_20 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|24413660|emb|CAD47740.1| Unknown [Streptococcus agalactiae NEM316] gi|76586106|gb|EAO62631.1| Two-component response regulator czcR [Streptococcus agalactiae 18RS21] gi|77160729|gb|EAO71842.1| DNA-binding response regulator [Streptococcus agalactiae 515] Length = 223 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L SI +LK ++++V GE+ ++ E+D IILD+ + + GF Sbjct: 1 MKILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ LR + +L+ ++ED++ GL GADDY+ KPF EL+ARIRA++RR+ Sbjct: 61 TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRAN 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S I D+++NL K V + I LT KEY+++E L+ ++ L++ H++ Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E IIDV I LR+KL N G + I+T G GYV+ Sbjct: 181 DYDYYGESNIIDVLIKNLRRKLDNNRDG-SLIKTKRGLGYVI 221 >gi|300854728|ref|YP_003779712.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434843|gb|ADK14610.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 228 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 140/227 (61%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDDK ++ SI+ LK + +++ GE+G+ + + +D IILD+ L + G Sbjct: 1 MKILVVEDDKLISQSIKNSLK-DYYSIDTALDGEEGLYMAEQNIYDLIILDIMLPSLNGD 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L++LR +STP+ +L+ S+EDK+ G + GADDYISKPF+ EEL RI A++RRS Sbjct: 60 EILKSLRKNGVSTPILLLTAKDSLEDKINGFKIGADDYISKPFHIEELKVRIEALLRRSG 119 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ G+L +++ + + + +++L K + ++E L K T LTKE + ++ Sbjct: 120 ALINENILKCGNLKIDIKIRELSINNEKVNLQAKLFDLMEYLINNKGTILTKEQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I++V++ KLRK L G I+TV G GY+ + + K Sbjct: 180 GFESDTAINIVEVYMHKLRKTLV-EHGCDGEIKTVRGIGYMFKSSDK 225 >gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 223 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V V G DGI + K D +ILD+ L G+ Sbjct: 1 MKILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R LR KIS P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+ Sbjct: 61 EVCRELR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +G + ++V +L+VNL V+++ I + KE +++ L+ N T+E L+H Sbjct: 119 QGEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDH 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV I ++R+K+ I+TVWG GY Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIEKDKYPWK-IKTVWGVGY 219 >gi|330897339|gb|EGH28758.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 220 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+A+ I + L +E + + G + + FD ++LDLGL + G Sbjct: 1 MRLLLVEDDRAIGQGIRVALNTEGYTLDWLGDGLSALHALRSEPFDLLLLDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR ++ PV IL+ D++ GL +GADDY+ KPF+ +EL AR+RA++RRS+ Sbjct: 61 DLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ L+ +S++ ++ V +G + +T EYQ++ L +R +T+E N LY Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFKGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D+ E ++V I LRKKLS I TV G GY+L A Sbjct: 181 WQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLELKA 220 >gi|317402633|gb|EFV83192.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 223 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MRILL+ED+ L ++E L+S +V DG+ ++ +DA++LD+ L Sbjct: 1 MRILLVEDNLDLGDAVESKLRSAGHSVQWV---RDGVAALRWGLDETWDALVLDINLPGK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF V+R LR A + PV +++ S IEDK+ L GADDY+ KPF+ EL AR+RA++R Sbjct: 58 DGFSVIRELRAAGLEAPVLVMTARSEIEDKIDMLDLGADDYLVKPFDLRELEARLRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G S+ G+LS++L + V + G + L +E++++E+L + T+ KE +N Sbjct: 118 RPAGQTSSVTAYGNLSLDLANRHVTLAGAPLELGRREFRLLEILLGKLGQTVAKERLMNQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+D D+ + +++ I +LRKKL AG I TV G GY R + Sbjct: 178 LFD-LDDGSLNALELLISRLRKKL---AGASIDIVTVRGVGYQARSH 220 >gi|300024305|ref|YP_003756916.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299526126|gb|ADJ24595.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 221 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +AHSI L + +F V GE +D I+LDLGL I G Sbjct: 1 MRILVVEDEPKIAHSIVTALSAAHFQVDAARDGETAWFRGDTENYDLIVLDLGLPKIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R PV IL+ + ++V G+ +GADDY++KPF EEL+AR+R+++RRS Sbjct: 61 SVLKKWRATGRMMPVLILTARGAWPERVEGIDAGADDYLAKPFQLEELMARVRSLIRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH +++ G L+++ V + G + ++ EY++I L K + + HLY Sbjct: 121 GHGSAILTAGPLALDTRQMRVVLDGAPVPVSPLEYRLIGYLMHHKGRVVPPTELIEHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + ++ + +LR+KL G+ IET G GY++ E + Sbjct: 181 DDDARDANALEAVVTRLRRKL-----GQETIETRRGFGYMVSEPS 220 >gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 248 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + V G + + ++ DA++LD+ L D+ GF Sbjct: 22 VRVLVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTARQFQPDAVVLDVMLPDLDGF 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + PV L+ ++ED+V GL G DDY++KPF+ EE++AR+RA++RRS Sbjct: 82 AVLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRS- 140 Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A ++++ GDLS++ D+ V G I+LT E++++ L L+K L Sbjct: 141 GFAIAARHEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQIL 200 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++ + +++++I LRKK+ AG I T+ G GYVL+ Sbjct: 201 DRVWNYDFGGQANVVELYISYLRKKID--AGRAPMIHTLRGAGYVLK 245 >gi|229160061|ref|ZP_04288063.1| Two-component response regulator [Bacillus cereus R309803] gi|228623372|gb|EEK80196.1| Two-component response regulator [Bacillus cereus R309803] Length = 226 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 131/222 (59%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I+L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDRVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223 >gi|126664543|ref|ZP_01735527.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter sp. ELB17] gi|126630869|gb|EBA01483.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter sp. ELB17] Length = 226 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 133/227 (58%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L+IEDD +A + L+ +F V D G+ G+ + E+D +I+D L + G Sbjct: 1 MKALVIEDDHDVASYLVKGLRESDFVVDHADDGKKGMLMAASEEYDIMIVDRMLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R P+ ILS + ++D+V GL+ G DDY++KPF+ EL+ARI +++RR+R Sbjct: 61 AIIKTVRATGNQVPILILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNR 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ V DL ++L A+TV+ G I + +E++++E L +T+ M L + Sbjct: 121 QAAETETVLHVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV I +LR K+ + ++TV G GY+LRE A Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKI-DKEFDTPLLQTVRGAGYMLRETA 226 >gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 232 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G + L+ K+Y+++E L L +E + ++ Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 232 >gi|160895900|ref|YP_001561482.1| two component heavy metal response transcriptional regulator [Delftia acidovorans SPH-1] gi|160361484|gb|ABX33097.1| two component heavy metal response transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 230 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 131/229 (57%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ A + L F V + G DG L +D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R+LR A PV L+ S++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q I DL ++L + G RI+LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D + + +IDV I +LR K+ +A K I TV G GY L +A D+ Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDAFNPK-LIHTVRGMGYTL--DAPDD 226 >gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223 >gi|170690127|ref|ZP_02881294.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170144562|gb|EDT12723.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 223 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH +L+ NF V GE + +D ++LDL L + G Sbjct: 1 MKLLLVEDNSELAHWTVNLLRLANFAVDCVPNGECADTMLTTQHYDVVVLDLRLPRMDGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR PV +L+ S +DKV +GADDY+ KPF+ ELVARI+A++RR Sbjct: 61 EVLARLRRRGDMVPVIMLTAHGSTDDKVDCFNAGADDYVVKPFDVRELVARIKALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S + GDL D + R+ L +E+ ++E L LR+ T++K + + ++ Sbjct: 121 GGMSSCLTCGDLQYISDTREFFHNDERLALRRREHTVLETLMLRQGKTVSKSVLMESVFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DEP ID++I +LRK L+ ++ I T+ G GY+LR Sbjct: 181 LDDEPSADAIDIYIHRLRKHLARSSA---QIMTLRGLGYILR 219 >gi|82546448|ref|YP_410395.1| DNA-binding transcriptional regulator BasR [Shigella boydii Sb227] gi|81247859|gb|ABB68567.1| transcriptional regulatory protein [Shigella boydii Sb227] gi|320183598|gb|EFW58442.1| Transcriptional regulatory protein basR/pmrA [Shigella flexneri CDC 796-83] gi|332087317|gb|EGI92446.1| transcriptional regulatory protein basR/pmrA [Shigella boydii 3594-74] Length = 222 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK+ I TV G GY+L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVANEEN 222 >gi|227431176|ref|ZP_03913231.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353071|gb|EEJ43242.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 235 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 136/222 (61%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIEDD LA ++ L+ VTD G DG + +D II DL L G Sbjct: 7 IKILLIEDDVNLADNVVGFLQDFADINAVTD-GLDGEFEAQEAPYDLIISDLMLPGETGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ LR + TPV IL+ +S++DK+ G GADDY++KPF++EEL+ R++A++RRS Sbjct: 66 ELIKNLRANDVETPVLILTAKTSLDDKIEGFNVGADDYLTKPFHREELLVRVKALLRRSG 125 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ + + GD+ +NL+ + V+V G + L GKE+ ++ L+ KN +T++ + ++ Sbjct: 126 VYSEDNTLAVGDVMINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++++++ LR+KL A G N I+T+ G++L Sbjct: 186 GIDSDTTINVVNIYLNNLRRKLE-AVGQNNLIKTLRNIGFIL 226 >gi|254471900|ref|ZP_05085301.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] gi|211959102|gb|EEA94301.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] Length = 219 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+ L + L+ + V GE+G L +DA+ILDLGL + G V Sbjct: 1 MLIVEDDRDLNRQLCEALEDAGYVVDKAYDGEEGHFLGDTEPYDAVILDLGLPQMDGLSV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L R S PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ G Sbjct: 61 LERWRRDGHSMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAAGL 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A + I GD+ ++ A V G + LT E++++ L K +++ + HLYD Sbjct: 121 ASNEISIGDIVLDTKAGKVTKNGMSVKLTSHEFRLLSYLMHHKGRVISRTELVEHLYDQD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ +LRKK G + IETV G GY L+E Sbjct: 181 FDRDSNTIEVFVGRLRKKF-----GSSLIETVRGLGYRLQE 216 >gi|311109256|ref|YP_003982109.1| transcriptional activator protein IrlR 6 [Achromobacter xylosoxidans A8] gi|310763945|gb|ADP19394.1| transcriptional activator protein IrlR 6 [Achromobacter xylosoxidans A8] Length = 232 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 137/232 (59%), Gaps = 6/232 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A I+ L F V ++ G +G+ L +++DAIILD+ L G+ Sbjct: 1 MRLLVVEDEPKTASHIKRGLTGLGFTVDLSGDGSEGLFLAIEHDYDAIILDVMLPGQDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR A+ TPV +LS S++++V+GL+ GADDY+ KPF+ EL ARI+A++RR Sbjct: 61 ALLRQLR-ARKPTPVLMLSARGSVDERVKGLRQGADDYLGKPFSFIELAARIQALLRRRV 119 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + + GDL V+L A+ G R++LT KE+ ++ LL+ + L+K M + Sbjct: 120 GTGGDSTWLQVGDLQVDLLARRATRAGQRLNLTAKEFALLSLLARHQGEILSKMMISEQI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +D + + +++V + +LR K+ +A + TV G GY+L A E C Sbjct: 180 WDMNFDSDANVVEVAMRRLRLKV-DAPYDTKLLHTVRGMGYLLESRA--EAC 228 >gi|262372418|ref|ZP_06065697.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262312443|gb|EEY93528.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 219 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 126/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD + A SI+ L+ + ++V + G+ I K + +D I+LD GL + G Sbjct: 1 MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVKQHHYDCILLDRGLPNASGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + PV ++ I D+V GL GA+DY+ KPFN EEL ARIRA +R+ + Sbjct: 61 DILKRIREQHLLIPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARIRAQLRQFQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++ +AKTV G ++LT KE+Q++ L N +T+E LY Sbjct: 121 KQTGAYLCFADLKLDPNAKTVLKAGETVNLTAKEFQILYKLMQNPNHIVTREQLEESLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E I+VFI ++RKK+ G I+T+ G GY Sbjct: 181 WGEEIESNAIEVFIYQIRKKI-----GSQLIKTIRGLGY 214 >gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 233 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL--CKFYEFDAIILDLGLTDIPG 59 RIL+ ED+ + + + LK ++V + GED ++ + FD ++LD+ + I G Sbjct: 3 RILICEDEDTIREFVVINLKRAGYDVVDVNCGEDALKTFEAEHGNFDVVLLDIMMPGIDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F V + +R + + +L+ + DKV GL GADDYI+KPF+ EL AR+ AI RR Sbjct: 63 FTVCKKIREKSSTIGIIMLTARTQEMDKVSGLMIGADDYITKPFSPSELTARVDAIYRRV 122 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + QS+I +G ++NL ++TV G I LT EYQ++E KNT L + Sbjct: 123 CMSFIKNEQQSVIESGPFTLNLKSRTVTKDGEPIELTQVEYQIMEFFMNNKNTALDRASI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LNH++ + KI+DV I ++R K+ YI T+WG GY Sbjct: 183 LNHIWGESYYGDDKIVDVNIRRIRMKIEEEPSNPKYIITIWGYGY 227 >gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 129/226 (57%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD + IE LK ++++V GE+ + L + +FD I+LDL L + G E Sbjct: 4 RILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEKFDLILLDLMLPKVNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV I+S S DK GL GADDYISKPF+ EL AR++A +RR+ Sbjct: 64 LLKHIRETS-KVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +A++ +I DL ++L + +V+V+G + LT KE+ +++LL + TKE Sbjct: 123 YAETESKPAEPPVIAFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTNHSRVFTKEQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ +I+V I +LR+K+ G YI T+WG GY Sbjct: 183 IYQLIWEEDYYGNENVINVHIRRLREKIEEDPSGPQYIRTIWGIGY 228 >gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G + L+ K+Y+++E L L +E + ++ Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223 >gi|218516896|ref|ZP_03513736.1| probable two-component sensor histidine kinase protein [Rhizobium etli 8C-3] Length = 629 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 126/220 (57%), Gaps = 13/220 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA + L+ + + + GED + K E+ A+ILDL L + G Sbjct: 1 MRLLVVEDNKDLAAWLGKALRQAQYAIDIAHDGEDAEHMLKVAEYSAMILDLALPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV IL+ +S++ +V GL SGADDY++KPF EL ARIRA+VRR + Sbjct: 61 TLLKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S I GDL + + V G + LT +EY ++E L ++ TT++K Sbjct: 121 DRASSEITVGDLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKLGTTVSKTAL------ 174 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 P+ ++++I +LRKKL N++ I T+ G GY+ Sbjct: 175 ----PKASSVEIYIHRLRKKLENSS---VQIATLRGLGYL 207 >gi|261253108|ref|ZP_05945681.1| two-component system response regulator QseB [Vibrio orientalis CIP 102891] gi|260936499|gb|EEX92488.1| two-component system response regulator QseB [Vibrio orientalis CIP 102891] Length = 219 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 126/224 (56%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++EDD L I L+ +V +L +DGI+ E+D I+LDLGL + Sbjct: 1 MKILVVEDDPRLGEQIVETLEKTG---WVPELSQDGIDALYRATSEEWDVIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL ARIRA +R Sbjct: 58 DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G+A ++ G+LS++ V QG I LT EY+++ +++ + H Sbjct: 118 RASGNASPVMQIGNLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y + + I+VFI ++RKK++ I+TV G GY L Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PKVIKTVRGLGYQL 216 >gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family [Candidatus Desulforudis audaxviator MP104C] Length = 227 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 9/222 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+ L L+ E F V GE +E D +ILD+ L G+ V Sbjct: 6 ILMVEDEAAVRDVARLYLEKEGFRVVPALDGEQALEQLTAVNPDLVILDIMLPKKDGWSV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R + + P+ +LS D+V GL+ GADDY++KPF+ ELVAR++A++RRS Sbjct: 66 CREIR-RQTAVPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRRSNAP 124 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G +L G L+++ +A+ VEV+G I LT KE++++ L+ R ++E L Sbjct: 125 AGTGAGPALRYPG-LTIDTEARRVEVEGQPIALTPKEFELLAFLASRPRRVFSREQLLAG 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + + +D I +LR+KL G+NY++TVWG GY Sbjct: 184 VWDYEYPGDTRTVDTHIKRLREKLRGT--GRNYLKTVWGLGY 223 >gi|302186071|ref|ZP_07262744.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. syringae 642] Length = 225 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L + +ILD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ ++D++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH I DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219 >gi|227872835|ref|ZP_03991146.1| two component response regulator [Oribacterium sinus F0268] gi|227841305|gb|EEJ51624.1| two component response regulator [Oribacterium sinus F0268] Length = 228 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 138/225 (61%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+K L+ SI+++L+ + V GE+ +E K +D +ILD+ + + G+ Sbjct: 1 MRILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIYDLMILDVMMPKLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR K P+ +L+ S +ED++ GL+ GAD Y++KPF+K EL+A I A++RR + Sbjct: 61 QVARQLRKEKNGLPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRR-Q 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GDLS++LD+K + H + L+ KE++++ +L KN L+KE L ++ Sbjct: 120 GQEVNSLSFGDLSLDLDSKDLSSGAHSLKLSKKEFELMRMLLQGKNQILSKEQILQKVW- 178 Query: 181 GRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G D V+ ++V++ LRKKL + I++ G GY L E Sbjct: 179 GYDSDAVENHVEVYVGFLRKKL-RLLESRVSIQSRRGLGYFLAEQ 222 >gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1] gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1] gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 133/228 (58%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I+ L+ + V GE+ +E K ++D I+LD+ L + GFE Sbjct: 3 KVLVVDDEKLIVKGIKFSLEQDEMQVDCAYDGEEALEKAKENQYDIILLDVMLPGLTGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R S P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RRS Sbjct: 63 VCQAIREFS-SVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAILRRSAH 121 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H + ++ L ++ +++ V + G ++LT KE+ ++ELL N ++E L Sbjct: 122 HDVKEEESAKVVECRGLKIDCESRRVHIHGKEVNLTAKEFDLLELLVFHPNKVYSREDLL 181 Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ G D P + + +DV I +LR+K+ G +Y+ T WG GY + Sbjct: 182 NTVW-GYDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYFQ 228 >gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium thermophilum] Length = 242 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 132/230 (57%), Gaps = 7/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSE-NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 I++IEDD +A SI L+ E +F+V +T GE G+ + + I+LD+ L + GFE Sbjct: 5 IVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLMNGFE 64 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R LR A P+ +L+ + DK+ GL GADDYI+KPF+ EL+ARI A++RR+ Sbjct: 65 ICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAVLRRT 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S+ G L ++ + V QG I+LT KE+ +++LL+ K LT+E L+ ++ Sbjct: 125 EGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLLDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + E + +DV I ++R+KL G YIET G GY E K T Sbjct: 185 GIDYDGETRTLDVHIRRVRQKL----GIDGYIETAVGIGYRFVEAGKQAT 230 >gi|116618899|ref|YP_819270.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097746|gb|ABJ62897.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 233 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 136/222 (61%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIEDD LA ++ L+ VTD G DG + +D II DL L G Sbjct: 5 IKILLIEDDVNLADNVVGFLQDFADINAVTD-GLDGEFEAQEAPYDLIISDLMLPGETGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ LR + TPV IL+ +S++DK+ G GADDY++KPF++EEL+ R++A++RRS Sbjct: 64 ELIKNLRANDVETPVLILTAKTSLDDKIEGFNVGADDYLTKPFHREELLVRVKALLRRSG 123 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ + + GD+ +NL+ + V+V G + L GKE+ ++ L+ KN +T++ + ++ Sbjct: 124 VYSEDNTLAVGDVMINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++++++ LR+KL A G N I+T+ G++L Sbjct: 184 GIDSDTTINVVNIYLNNLRRKLE-AVGQNNLIKTLRNIGFIL 224 >gi|152999147|ref|YP_001364828.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160873754|ref|YP_001553070.1| two component transcriptional regulator [Shewanella baltica OS195] gi|151363765|gb|ABS06765.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160859276|gb|ABX47810.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|315265979|gb|ADT92832.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 227 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 130/224 (58%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+ED++ +A I L++++FNV G G + D IILD+ L G Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR+LR + TP+ +L+ + + D+V+GL GADDY++KPF EEL ARI+A++RR Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q ++ G L ++ +++ QG + LT +E+ ++E L N LT+ L H++ Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSN-AAGGK--NYIETVWGRGYVL 221 +P ++DV I ++R K+++ GK IE++ G GY L Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224 >gi|293394527|ref|ZP_06638823.1| two component response regulator [Serratia odorifera DSM 4582] gi|291422992|gb|EFE96225.1| two component response regulator [Serratia odorifera DSM 4582] Length = 220 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 122/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDDK + I + L FN+ + TD G G + +DA+ILDL L I G Sbjct: 1 MRILLIEDDKIIGDGINVGLTKLGFNLDWFTD-GVIGRQALTSAPYDAVILDLSLPGIDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++LR R A PV IL+ ++E +V GLQ+GADDY+ KPF E+ AR++A++RR Sbjct: 60 LDLLREWREAGHDVPVLILTARDALEQRVSGLQNGADDYLCKPFALAEVAARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +V G L + A++V + G + LT +E ++ELL K L + + LY Sbjct: 120 HGQLTPQLVHGKLVFDTAARSVCLNGEPVILTPRELAVLELLLNNKGRVLARPLIQEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + DE ++V I LR+KL N I TV G GY L Sbjct: 180 NWDDEVSSNAVEVHIHHLRRKLGNGV-----IRTVHGVGYTL 216 >gi|326341835|gb|EGD65618.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli O157:H7 str. 1125] Length = 222 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWIGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|255321050|ref|ZP_05362220.1| DNA-binding response regulator [Acinetobacter radioresistens SK82] gi|262379549|ref|ZP_06072705.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255301874|gb|EET81121.1| DNA-binding response regulator [Acinetobacter radioresistens SK82] gi|262299006|gb|EEY86919.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 219 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + SI+ L+ + ++V + G+ + K ++++ I+LD GL G Sbjct: 1 MRILLVEDDTSQGESIKTWLELDGYSVDWVERGDYAMTALKQHDYECILLDRGLPYASGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR + TPV L+ SI D+V GL GA+DY+ KPF+ EEL ARIR+ +R + Sbjct: 61 EILKTLRQHQAQTPVIFLTARDSISDRVEGLDLGANDYLVKPFSLEELSARIRSQMRNLQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ ++ ++ AKTV+ +G LT +E+Q++ L N +T+E +Y Sbjct: 121 AGQSQTLIWNNICLDPKAKTVQQEGESRDLTAREFQILYKLMQHPNHVVTREQLEESIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE E I+V+I +LRKKL G I T+ G GY + E Sbjct: 181 WGDEVESNAIEVYIYQLRKKL-----GSQTIRTIRGLGYRMGE 218 >gi|218233709|ref|YP_002367381.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229073107|ref|ZP_04206291.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus F65185] gi|229079836|ref|ZP_04212368.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus Rock4-2] gi|218161666|gb|ACK61658.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228703420|gb|EEL55874.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus Rock4-2] gi|228710015|gb|EEL62005.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus F65185] Length = 224 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+++LA +EL LK E + V + G G+ +D I+LDL L + G EV Sbjct: 4 ILIIEDEESLADFLELELKYEGYKVDIQLDGRKGLSAALEKNYDLILLDLMLPGLNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R LR K +TP+ +L+ SI D+V GL SGADDY+ KPF EEL+AR+R I RR Sbjct: 64 CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEHI 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + DL + ++++T+ I LT KE++++ + N LT+++ L+ ++ Sbjct: 123 ENKQVSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I+DV++ LR KL ++ + YI+TV G GY+++ Sbjct: 183 GYDAIVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224 >gi|255034088|ref|YP_003084709.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254946844|gb|ACT91544.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 232 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 134/231 (58%), Gaps = 5/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ + I+ L + + + G+ G+++ ++FD IILDL + I G Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R R A+++TP+ +L+ + + E+ V GL SGADDY++KPF EL AR+R ++RR + Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ KTV+ G I LT E++++E L N L + L Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++D ++DV+I LRKK+ K I TV+G GYV+R++ +D Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIK-LIHTVFGMGYVIRQSYED 230 >gi|209921602|ref|YP_002295686.1| DNA-binding transcriptional regulator BasR [Escherichia coli SE11] gi|256019757|ref|ZP_05433622.1| DNA-binding transcriptional regulator BasR [Shigella sp. D9] gi|331675637|ref|ZP_08376384.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA280] gi|332280893|ref|ZP_08393306.1| transcriptional regulatory protein [Shigella sp. D9] gi|56540601|gb|AAV92754.1| PmrA [Escherichia coli] gi|56540609|gb|AAV92758.1| PmrA [Escherichia coli] gi|56540611|gb|AAV92759.1| PmrA [Escherichia coli] gi|56540653|gb|AAV92780.1| PmrA [Escherichia coli] gi|209914861|dbj|BAG79935.1| two-component response regulator [Escherichia coli SE11] gi|284924201|emb|CBG37301.1| two-component response regulator [Escherichia coli 042] gi|324017155|gb|EGB86374.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|331067245|gb|EGI38653.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA280] gi|332103245|gb|EGJ06591.1| transcriptional regulatory protein [Shigella sp. D9] Length = 222 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMSGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23] gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23] gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W] gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II] Length = 235 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 134/229 (58%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ ++ L++E++ V G++ ++ + FD IILDL L + G + Sbjct: 3 KILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEPFDFIILDLMLPSLSGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R KI TP+ IL+ + DK+ GL+ GADDY++KPF+ E++ARI+AI RRS+ Sbjct: 63 VTRKIREDKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQS 122 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ I G ++++ + G R+ LT KE++++ + R TL+++ Sbjct: 123 QPQTSQKPGNSDQITVGQIAIDPENYKASKGGKRLQLTPKEFELLVYFAQRVGKTLSRDA 182 Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ G D P E +++D+ + LR K+ +Y++TV G GY + Sbjct: 183 LLNGVW-GFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQM 230 >gi|24375965|ref|NP_720008.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24350955|gb|AAN57452.1|AE015880_11 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 220 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L + L + V D G DG L + F+A+ILDLGL PG Sbjct: 1 MRLLLIEDDIDLVARLIPALNKAGYTVEHADNGIDGAFLGEEEAFEAVILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R ++ PV IL+ + ++V GL++GADDY+ KPF+ EEL+AR+ A++RR Sbjct: 61 SVLSHWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +L+ +S+++D +T +G I LT EY+++ L + ++K +Y Sbjct: 121 GRADNLLQHAGVSLDVDKQTATNAEGEVIELTKIEYRLLHYLMANPSKIVSKSELSERIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+V++ +LR++L GK+YIET G+GY L++ Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKD 219 >gi|120553067|ref|YP_957418.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120322916|gb|ABM17231.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 221 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ LA + L+ F++ T + L + ++ A +LDLGL D G Sbjct: 1 MRLLLVEDDRLLAEGLVRQLEKAGFSIDHTSSAREAQILGEQEDYRAAVLDLGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R + PV +L+ +DKV GL++GADDY++KPF EEL+ARI A++RRS Sbjct: 61 EVLKRWRSKLVECPVLVLTARGDWQDKVNGLKAGADDYLAKPFQTEELIARINALIRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S + G ++ + +++ +G LTG E++++ L R +KE + LY Sbjct: 121 GRVHSQVKAGGFELDENRQSLRTEEGAEHALTGTEFRLLRCLMSRPGHIFSKEQLMEQLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + P +I+ +I +LRK + N I T G+GY+ Sbjct: 181 NLDESPSENVIEAYIRRLRKLVGNET-----ITTRRGQGYMF 217 >gi|330873035|gb|EGH07184.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 225 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L + +ILD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ ++D++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH I DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL + + + T+ G GYVL Sbjct: 180 INFDSDTNVVEVAIKRLRAKL-DGPHEQKLLHTIRGMGYVL 219 >gi|300693546|ref|YP_003749519.1| response regulator in two-component regulatory system with cops, regulation of copper resistance [Ralstonia solanacearum PSI07] gi|299075583|emb|CBJ34876.1| response regulator in two-component regulatory system with CopS, regulation of copper resistance [Ralstonia solanacearum PSI07] Length = 228 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 135/228 (59%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG+ L ++D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLAMTGDYDLLVLDVMLPDLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +++++LR A+ + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R ++RR S Sbjct: 61 QIVQSLRAAERAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I DL ++L + G RI LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +IDV I +LR K+ + K I+TV G GYVL E+ +D Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFAPK-LIQTVRGMGYVL-EDPED 226 >gi|17942992|pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM Thermotoga Maritima Length = 225 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED++ LA I LK E F V V GE+G FD +ILD+ L G+ Sbjct: 3 VRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEPFDVVILDIXLPVHDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L++ R + ++TPV L+ +S +E +V+GL GADDY+ KPF+ EL+AR+RA++RR Sbjct: 63 EILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIRRKS 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL ++ K I LT KEYQ++E L KN +TKE HL+ Sbjct: 123 ESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVXNKNRVVTKEELQEHLWS 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE ++ I LRKK+ K I TV G GYV R+ Sbjct: 183 FDDEVFSDVLRSHIKNLRKKVDKGF-KKKIIHTVRGIGYVARD 224 >gi|75675380|ref|YP_317801.1| two component transcriptional regulatory protein [Nitrobacter winogradskyi Nb-255] gi|74420250|gb|ABA04449.1| two component transcriptional regulator, winged helix family [Nitrobacter winogradskyi Nb-255] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+ L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEAHFLGDSEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++AR+RA++RRS Sbjct: 61 SVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARMRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G ++++ V V G+ + +T EY+++ L +++ + HLYD Sbjct: 121 GHAHSELTCGPVTLDTRTGRVSVGGNPVKMTSHEYRLLAYLMHHIGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VF+ ++RKKL + I+TV G GY+L A Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLLTPPA 220 >gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K +A I+ L+ ++++V + G +G++ + E+ ILD+ + G Sbjct: 1 MKILVVEDEKKVAGFIKRGLEEDDYSVTIVHDGAEGLKQAQSGEYSLAILDVMVPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR PV +L+ + +D V GL++GADDY++KPF EL+AR+RA++RRS Sbjct: 61 TVIRELREGGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++ + V G+ I LT KEY ++E L N L++ M H++D Sbjct: 121 HDRGAEIFFADLRLDPVSHKVWRSGNEIDLTAKEYGLLEYLVRNPNKVLSRAMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + IIDV++ LRKK+ K I TV G+GY+LRE Sbjct: 181 YAFDSFTNIIDVYVNYLRKKVDKEYSTK-LIHTVRGQGYILREG 223 >gi|49081912|gb|AAT50356.1| PA1437 [synthetic construct] Length = 230 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 132/230 (57%), Gaps = 3/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L + F V + D G DG L E+D I+LD+ L + G+ Sbjct: 1 MRVLIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVMLPGVDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR + TPV +L+ +ED+VRGL+ GADDY+ KPF+ ELVAR++A+ RR Sbjct: 61 GVLRALR-ERRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGG 119 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + S + DLS++L ++ V R+ LT KEY ++ +L+ R L+K ++ Sbjct: 120 NHESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 D + + +++V I +LR KL K + T+ G GYVL A E+ Sbjct: 180 DINLDTDTNVVEVAIKRLRAKLDGPFENK-LLHTIRGMGYVLENRALAES 228 >gi|85706948|ref|ZP_01038038.1| two component transcriptional regulator, winged helix family protein [Roseovarius sp. 217] gi|85668559|gb|EAQ23430.1| two component transcriptional regulator, winged helix family protein [Roseovarius sp. 217] Length = 224 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 126/220 (57%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED++ LA +I L++E V G + +L + FD I+LD+ L G+ Sbjct: 1 MRILLIEDNEELAGTIVDRLRAEGHCVDRESDGNEANDLLRHSLFDIILLDVNLPGKSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR+LR +TPV IL+ S I+++V GL +GADDY+ KPF+ EL+AR R + RR Sbjct: 61 EILRSLRARGDATPVLILTARSQIDERVVGLDAGADDYMVKPFDFRELLARCRVLARRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ V G LS + AK V G + L +E Q++E+L LTKE + LY Sbjct: 121 GTASNIFVAGGLSFDRAAKRAIVAGKDVDLRAREVQLLEILIDNLGRMLTKEEVADKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + P + ++ + +LR+KL + I+T G GY+ Sbjct: 181 FDESPSMNAVEQIVTRLRRKLHDT---PLVIKTARGLGYM 217 >gi|218898271|ref|YP_002446682.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218542022|gb|ACK94416.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 224 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221 >gi|228934470|ref|ZP_04097305.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825107|gb|EEM70904.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 226 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TP +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQKLRADNHTTPALLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGNQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223 >gi|228966132|ref|ZP_04127195.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228793617|gb|EEM41157.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 236 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233 >gi|148975848|ref|ZP_01812637.1| two-component system response regulator (Pho family) protein [Vibrionales bacterium SWAT-3] gi|145964593|gb|EDK29846.1| two-component system response regulator (Pho family) protein [Vibrionales bacterium SWAT-3] Length = 224 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 130/224 (58%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD +A + + E V G DG+ E+D IILD+ L GF Sbjct: 1 MKILLIEDDIHIARFLVNGFQQEGITVTHAIDGIDGLHEAVTEEYDVIILDIMLPKKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +TPV ILS S+E++V+GLQSGADDY+ KPF EL+AR + +VRR + Sbjct: 61 EVLAELRGQGYATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLVRRGK 120 Query: 121 GH-AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +Q L + G LS++L T++ I + +E+ +++LL + ++K L H+ Sbjct: 121 QPTSQPLELHYGPLSLDLLKHTLQRDQQTITINQREFMLMKLLLENPESVMSKTAILEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +P+ ++DV +C+LR K+ + K I T+ G GYVL+ Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKV-DKGFSKPLIHTLRGVGYVLK 223 >gi|238788573|ref|ZP_04632366.1| Two component heavy metal response transcriptional regulator, winged helix family [Yersinia frederiksenii ATCC 33641] gi|238723486|gb|EEQ15133.1| Two component heavy metal response transcriptional regulator, winged helix family [Yersinia frederiksenii ATCC 33641] Length = 235 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 135/223 (60%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ + I ++++ V D G DG+ L ++DAIILD+ L + G+ Sbjct: 1 MRLLIVEDEEKTSSYIRRAFLELSYSIDVADNGNDGLYLAIENDYDAIILDVMLPGLDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +L LR K TPV +LS S+++++VRGL+SGADDY+ KPF+ ELVARI+A+ RR Sbjct: 61 SLLEYLRAEK-QTPVLMLSARSTVDERVRGLRSGADDYLPKPFSLIELVARIQALHRRMS 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I+ DL ++L A+ V G RI LT KE+ ++ LL+ + L+K M + + Sbjct: 120 KDNNDPTHILIDDLQLDLIARKVSRGGIRIDLTAKEFSLLSLLARHQGKILSKMMIADEV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +++V I +LR K+ K + TV G GYVL Sbjct: 180 WDMNFDSDANVVEVAIKRLRNKIDTPYAVK-LLYTVRGMGYVL 221 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300075465|gb|ADJ64864.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 132/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD L + +L S F V+ + G D L + + ++LD+GL I GF Sbjct: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA--LSQRFNAAVLVLDIGLPGIDGF 58 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A +TPV +L+ +I D+V GL+ GADDY+ KPF ELVARI+A++RRS Sbjct: 59 EVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L V G LS++ K ++ G +I L+ +E+ ++E L + ++K+ ++ + Sbjct: 119 PQPAQLTV-GGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP 177 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++V++ ++R K++++ I T+ G GY+L ++ Sbjct: 178 WGEDFTINAVEVYVSRIRLKIADSGVA---IRTIRGFGYMLEKS 218 >gi|297563468|ref|YP_003682442.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847916|gb|ADH69936.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 221 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 131/229 (57%), Gaps = 11/229 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED++ + + L++ + V G DG+ + + D ++LDLGL IPG Sbjct: 1 MAILVVEDEEGIVSFVRRGLETAGYQVLTAADGIDGLTMALSSDVDLVVLDLGLPGIPGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + S PV +L+ ++ D+V L +GADDY+ KPF+ EL+AR+RA R R Sbjct: 61 EVLRRLRARRPSVPVIVLTAKDAVSDRVANLDAGADDYMVKPFSVSELLARVRA---RLR 117 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G Q ++ G + ++L A+T V+G ++L+ +E+ ++E+L ++ L+ Sbjct: 118 GGGQERGDVLAAGGVVLDLGARTASVEGRTVNLSAREFALLEVLIRHPTQVFSRPQLLDR 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + +++V++ +LR+KL G I+TV G GY L + A+ Sbjct: 178 VWGYDFDGASNVVEVYVSQLRRKL-----GSERIQTVRGAGYRLGDGAR 221 >gi|49474029|ref|YP_032071.1| two-component system regulatory protein [Bartonella quintana str. Toulouse] gi|49239533|emb|CAF25890.1| Two-component system regulatory protein [Bartonella quintana str. Toulouse] Length = 222 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 129/227 (56%), Gaps = 15/227 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL++EDD+ L H + ++S YV+D DG E L +DA+ILD+GL + Sbjct: 1 MRILIVEDDRNLNHQLAEAVRSAG---YVSDSAFDGQEAYFLGSTESYDAVILDIGLPLL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G V+ R PV +L+ DKV G+ +GADDY+ KPF+ EEL+AR+RA++R Sbjct: 58 DGISVVEKWRKEGHLMPVLMLTARDRWSDKVFGIDAGADDYVVKPFHLEELMARLRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RS GHA S + G +V LD KT V V G I LT E++++ L ++K Sbjct: 118 RSAGHATSALCCG--AVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCGRVVSKTELT 175 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 HLYD + + ++VF+ +LR+KL G + IET+ G GY +R Sbjct: 176 EHLYDQDFDKDSNTVEVFVGRLRRKL-----GVDVIETIRGMGYRVR 217 >gi|332652328|ref|ZP_08418073.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16] gi|332517474|gb|EGJ47077.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16] Length = 225 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA ++ +++ + + + G DG++ ++D IILD+ L + GF Sbjct: 1 MRILIVEDETRLAETLRQLMEDQRYQADMVGDGADGVDYGLTGQYDLIILDVMLPKVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A ISTP+ +L+ I DK+ GL GADDY++KPF+ EL+AR+RA+ RR Sbjct: 61 EVARRLRSAHISTPILMLTARDDISDKIGGLDCGADDYMTKPFDSGELMARVRALTRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDLS+ ++ + V + L KE++++ LL + ++KE + ++ Sbjct: 121 EVLGDVLKVGDLSLECSSRLLRVGERSVRLGFKEFEVMRLLMVNSRAVVSKETLIAKIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E ++V+I LRKKL+ G + I TV GY L Sbjct: 181 LDSEAEDNNVEVYISFLRKKLAY-LGSRIAISTVRKVGYYL 220 >gi|229030904|ref|ZP_04186923.1| Two-component response regulator [Bacillus cereus AH1271] gi|228730398|gb|EEL81359.1| Two-component response regulator [Bacillus cereus AH1271] Length = 236 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR+ Sbjct: 73 QVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRNT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQIITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233 >gi|160872789|ref|ZP_02062921.1| DNA-binding response regulator [Rickettsiella grylli] gi|159121588|gb|EDP46926.1| DNA-binding response regulator [Rickettsiella grylli] Length = 224 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 134/223 (60%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD +L I+ LK + V ++TD G+ + K FD I+LDL L + G Sbjct: 1 MRILLVEDDGSLGDGIQKGLKQYGYTVDWLTD-GQTALSSIKTESFDVILLDLNLPKLSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK-PFNKEELVARIRAIVRR 118 VLR +R A I+TP+ IL+ S+ED+V+GL SGADDY SK F+ +EL ARIRA+ RR Sbjct: 60 LSVLREVRAAGITTPILILTARQSVEDRVKGLDSGADDYYSKYYFDLDELSARIRALQRR 119 Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + A L+ D+ +N A TV ++G ++L+ +E+ +++ L ++++ Sbjct: 120 SSNNRASPLLTYRDIELNPSAFTVTLKGQVVNLSRREFSLLQKLLENAGHVVSRDSLNQC 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 LY D+ + ++V + LRKKL++ ++I T+ G GY+ Sbjct: 180 LYGWEDDIDSNTLEVHVHNLRKKLAHT----HFIRTIRGVGYM 218 >gi|228901707|ref|ZP_04065880.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228857936|gb|EEN02423.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 226 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223 >gi|218248415|ref|YP_002373786.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218168893|gb|ACK67630.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 635 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 129/235 (54%), Gaps = 2/235 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD + + +I L + + V + GE G+EL + + +D I+LD+ L + G Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + TP+ +L+ + D V GL++GADDY+ KPF+ EL+ARI+A+ RR + Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L +N V QG +HLT EY ++EL ++++ ++ ++ Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 P + I I LR+KL +N I+TV+G GY L E E +LE+ Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGE--LQECLSFLES 233 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ++LI+DD ++ L FNV + + + D +ILDL + G + Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109 +A+R S P+ LSG E + L GAD Y+ K EEL+ Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >gi|217971454|ref|YP_002356205.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|217496589|gb|ACK44782.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] Length = 219 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L + L + V D G DG L + F+A+ILDLGL PG Sbjct: 1 MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R ++ PV IL+ + ++V GL++GADDY+ KPF+ EEL+AR+ ++RR Sbjct: 61 HVLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +++ +S+++D + V V G I LT EY+++ L + + ++K +Y Sbjct: 121 GRADNVLQHAGVSLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+V++ +LR++L GK+YIET G+GY L+E Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKE 219 >gi|326387977|ref|ZP_08209581.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207478|gb|EGD58291.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 218 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD LA + L+ F V V +G + A+ILDL L D G Sbjct: 1 MRLLLVEDDVQLASRLGERLRGAGFAVDVATNRAEGEAWPDLDKIGAVILDLNLPDGSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R +I+ PV IL+ S +DKV GL +GADD++ KP EEL+AR+ A+ RR + Sbjct: 61 DLLRYWRARRIACPVIILTARGSWQDKVEGLNAGADDFVVKPVRFEELLARLHAVWRRQQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + I G L +N K E++G + L+ E++++ L L++ ++HLYD Sbjct: 121 GAADAWIEKGALRLNPADKKAELEGEELALSRMEFRLLHLFLRHAGKPLSQSEIMDHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ++V I +LR+K+ G IET+ G GY L Sbjct: 181 LDSERQANAVEVLIGRLRRKI-----GSERIETLRGFGYRL 216 >gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241] gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223 >gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 130/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GEDG+ L +DAI+LD+ + + GF Sbjct: 6 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q I + + K V+V G + L+ K+Y+ +E L L +E + ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYEFLEYLVQNSGKILMREQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 228 >gi|320157931|ref|YP_004190309.1| DNA-binding response regulator [Vibrio vulnificus MO6-24/O] gi|319933243|gb|ADV88106.1| DNA-binding response regulator [Vibrio vulnificus MO6-24/O] Length = 218 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L S+ L + V + G K +F A+ILDL L DI G Sbjct: 1 MRLLLIEDDTLLGQSMVTSLSRHGYTVDWLEKGSGVTSALKTEDFTAVILDLTLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R A + PV IL+ I+D+V+GL GADDY+ KPF EEL+AR+R ++RR Sbjct: 61 DVLRNIRSAGFNLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G+LS++L +++ Q + LT E++++ L ++K+ L+ Sbjct: 121 GSATEVIEVGELSLSLSEQSIRYQEAVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D I+V I LRKK N I+ + G GY++ Sbjct: 181 WDDSASDNAIEVHIHNLRKKAPNVP-----IKNIRGVGYII 216 >gi|304398496|ref|ZP_07380369.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308189007|ref|YP_003933138.1| transcriptional regulator [Pantoea vagans C9-1] gi|304354001|gb|EFM18375.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308059517|gb|ADO11689.1| Probable transcriptional regulator [Pantoea vagans C9-1] Length = 219 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 11/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MR+LL+EDD+ + +++ L+ ++V D DG+ + + ++LDLGL Sbjct: 1 MRVLLVEDDEMIGANLQQALQGAGWSV---DWVRDGVYAQNAWSEGGYSCVLLDLGLPRD 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLR R +TPV IL+ ++ +++GL SGADDY+ KPF+ +E++AR+RAI R Sbjct: 58 DGLQVLRRARGRGDATPVLILTARDTVAQRIQGLDSGADDYLLKPFDLQEVMARMRAITR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G A S++ +GD+ +++ + V +G R LT +EY ++ L R L++E N Sbjct: 118 RSHGAADSVLGSGDVQLDMMTREVLYKGQREQLTAREYALLYALLERPGAILSREQLENR 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +Y DE +DV I +R+KL N + I V G G+ Sbjct: 178 IYGWGDEVSSNAVDVLIHGMRRKLDN-----DVIRNVRGLGW 214 >gi|299139390|ref|ZP_07032565.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298598659|gb|EFI54822.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 236 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 136/221 (61%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLI+DD++LA I S F++ D GEDGI L + F IILD+ L I GFE Sbjct: 7 RLLLIDDDRSLAALITEYCGSGGFSITAADTGEDGIRLAQQQYFLLIILDVMLPGIDGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 VLR +R + +TP+ +L+ + +D++ GL+SGADDY+ KPF EEL+ARI++I+RR Sbjct: 67 VLRRIRYSS-NTPILMLTTRGAAKDRIHGLESGADDYLPKPFQPEELLARIQSILRRVHP 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + S + GDL+VN +++ ++ + LTG E+ ++++L + ++E ++ ++ Sbjct: 126 RENLASFTL-GDLTVNNLERSITLEDRPLDLTGAEFHLLKVLLSQPGMAFSREELVHRIF 184 Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 GR+ + + +D + LRKKL A GK+ +++ GY Sbjct: 185 -GREPSGLDRSVDNLVNNLRKKLGAHANGKDRFKSIRNVGY 224 >gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 238 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 126/233 (54%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD +A I L+ F+V G++G+E FD +++DL L ++ GF Sbjct: 6 RLLLVEDDGQIAKIISDHLRKYGFSVAWASTGKEGLEEFAAEAFDLVLVDLMLPELDGFT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR +R P+ I+S S E KV+G GADDYI+KPF+ EEL ARI + +RR R Sbjct: 66 LLRTIRKTH-EIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITSHLRRYRR 124 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ + LS++ K V + G ++LT KEY+++ LL+ T +KE L Sbjct: 125 YQGVNDTSKVNVYHNGLSIDFSQKAVHLDGQLLNLTAKEYELLHLLAKNPFETFSKEALL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ D + V I LR KL + + +I+TVWG GY KDE Sbjct: 185 EMIWKQEDISASNTVTVHIKSLRSKLKDTSRSAVFIQTVWGSGYRFIGEDKDE 237 >gi|332531173|ref|ZP_08407086.1| two component transcriptional regulator, winged [Hylemonella gracilis ATCC 19624] gi|332039280|gb|EGI75693.1| two component transcriptional regulator, winged [Hylemonella gracilis ATCC 19624] Length = 239 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGE-DGIELCKFYEFDAIILDLGLTDIP 58 MRIL+ EDD+ LA + L+ V +V + E D + + +FD +ILDLGL + Sbjct: 1 MRILIAEDDQVLADGLLRTLRGSGAAVNHVANGAEADAALMTQPSQFDLLILDLGLPKLH 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EVL+ LR S PV IL+ S+ED+V+GL GADDY++KPF+ +EL AR+RA+ RR Sbjct: 61 GLEVLQRLRARGASLPVLILTAADSVEDRVQGLDYGADDYMAKPFSLQELEARVRALTRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G A LI G L + G + L+ +E ++E+L R ++K+ ++ L Sbjct: 121 GLGAASGLIRHGPLVYGQAGHVATIDGRLVELSARELGLLEVLLQRCGRLVSKDQLVDRL 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E I+V+I +LRKK+ GG I TV G GY L Sbjct: 181 CEWGEEVSNNAIEVYIHRLRKKIE---GGPIRIATVRGLGYCL 220 >gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223 >gi|16131939|ref|NP_418537.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli str. K-12 substr. MG1655] gi|89110834|ref|AP_004614.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli str. K-12 substr. W3110] gi|170083565|ref|YP_001732885.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli str. K-12 substr. DH10B] gi|238903221|ref|YP_002929017.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli BW2952] gi|34395951|sp|P30843|BASR_ECOLI RecName: Full=Transcriptional regulatory protein BasR gi|536957|gb|AAA97012.1| basR [Escherichia coli str. K-12 substr. MG1655] gi|1790552|gb|AAC77074.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli str. K-12 substr. MG1655] gi|85676865|dbj|BAE78115.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli str. K12 substr. W3110] gi|169891400|gb|ACB05107.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli str. K-12 substr. DH10B] gi|238860857|gb|ACR62855.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli BW2952] gi|260451058|gb|ACX41480.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|315138669|dbj|BAJ45828.1| DNA-binding transcriptional regulator BasR [Escherichia coli DH1] gi|323380500|gb|ADX52768.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] Length = 222 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + +V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|90426403|ref|YP_534773.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108417|gb|ABD90454.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 221 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ +A +E L++ + V GE+ ++ AI+LDLGL + G Sbjct: 1 MRVLVVEDDRRIAADLERGLQAAGYVVETVRDGEEAWFRGDTEDYAAIVLDLGLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R TPV IL+ S ++V G+ +GADDY+ KPF EEL+AR+R+IVRRS Sbjct: 61 AVLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S+I GD++++ V+V G ++L+ EY++I L L + +++ ++Y Sbjct: 121 GQACSVISVGDVTLDERQMKVDVGGVPVNLSPLEYRLIAFLFLHRGRVVSQAELSENIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + I+V I ++RKKL G IET G GY++ Sbjct: 181 NEDAHDSNAIEVLIGRVRKKL-----GSELIETRRGFGYLV 216 >gi|330963138|gb|EGH63398.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 225 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L + +ILD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ ++D++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH I DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219 >gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 236 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F+V G + + + D ++LD+ L D+ GFE Sbjct: 12 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVMLPDLDGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R TPV L+ + +DK+RGL G DDY++KPF+ EEL ARIRA++RR+ Sbjct: 72 VIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTST 131 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + DL ++ + V G R+ L+ E++++ L L N L+K L+H++ Sbjct: 132 GEQAPARLTFADLELDEETHEVYRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++ +I LR+K+ N I T+ G GYVLR+ A Sbjct: 192 NYDFRGDDNIVESYISYLRRKVDNVE--PRLIHTLRGVGYVLRKPA 235 >gi|153010575|ref|YP_001371789.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562463|gb|ABS15960.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 220 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + + L F E+ +EFDA++LDL L D G Sbjct: 1 MRVLIVEDDAVLRDGLTVGLSIGGFTADAVKTCEEAGAALTNHEFDALVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LR + +TPV +L+ + D++ GL +GADDY+ KPF+ +E+ AR+RA+VRR+ Sbjct: 61 DVLKSLRERQDATPVLLLTARDQVADRIHGLDAGADDYLGKPFDLDEVAARLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+LI L ++ + VE QG I L+ +EY ++ L + L++ LY Sbjct: 121 GRPQALIEWRGLRLDPANQNVEHQGEPIRLSRREYSILHALMIHPGRILSRSQIEEKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E E ++V I LR KL G I+TV G GY L Sbjct: 181 WQEEVESNAVEVHIHHLRGKL-----GPGMIQTVRGIGYRL 216 >gi|254469487|ref|ZP_05082892.1| DNA-binding response regulator [Pseudovibrio sp. JE062] gi|211961322|gb|EEA96517.1| DNA-binding response regulator [Pseudovibrio sp. JE062] Length = 222 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 134/227 (59%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTD--LGEDGIELCKFYEFDAIILDLGLTDI 57 MR+LL+ED++ +A +I+ L+ F V +V D L ED + KF D +ILDLGL Sbjct: 1 MRVLLVEDERLIADAIKAFLERHEFIVDWVDDGLLAEDALRTGKF---DLVILDLGLPGQ 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E LRA+R K P+ ILS + ++++ GL GADDY++KPF+ EEL+AR RA+VR Sbjct: 58 DGLEFLRAVRDDKADVPILILSARETTKNRIDGLNLGADDYLTKPFDMEELLARCRALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G + L+ G L+++LD K G + L ++++ +L R+ ++K + Sbjct: 118 RSVGRTRMLLQHGALTLDLDQKKACYNGAEVVLQPLAFRLLTILLERRGRVVSKSDLMEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LY + E +++V++ ++R+K ++ I T+ G GY++ E+ Sbjct: 178 LYGWEENAESNVLEVYVSQIRRKTTS-----KLIRTIRGVGYIVDED 219 >gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 66 EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229 >gi|187918765|ref|YP_001887796.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717203|gb|ACD18426.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 232 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 129/230 (56%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD LA + +++ E+F + GE L +DA++LDL L I G Sbjct: 1 MKLLLVEDDADLARWVMNLMQVEHFVIDWAQNGEQAETLLGLQCYDAVLLDLRLPGIGGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +VL LR + + PV +L+ S +DKV +GADDY+ KPF+ ELVARI+A++RR + Sbjct: 61 DVLARLRRKRDNVPVLMLTANGSTDDKVACFSAGADDYVVKPFDARELVARIKALIRRQA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G I GDL D++ +Q + L +E+ ++E L L++ T++K ++ ++ Sbjct: 121 AGDKGQSIECGDLRYLFDSREFMLQSEPLPLRRREHAILETLMLKQGKTVSKSTLMDKVF 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 DEP ID++I +LRK L A I T+ G GY+LRE E Sbjct: 181 TLDDEPSADAIDIYIHRLRKHL---AASSAKIMTLRGLGYILREAEPREA 227 >gi|323965502|gb|EGB60956.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323975545|gb|EGB70646.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|327250054|gb|EGE61773.1| transcriptional regulatory protein basR/pmrA [Escherichia coli STEC_7v] Length = 222 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMDGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 131/227 (57%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ LA + L L+ E ++V D G +G+E+ +FD I+LDL L ++ GFE Sbjct: 4 RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ SI D V GL GADDYI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQQEK-NTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ DL +++ + V I LT +E+ ++ L N +T+E L Sbjct: 123 EATKNAPAKASTYRDLKLDVQNRAVIRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228 >gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W] gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W] gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223 >gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ L + L L+ E F V G + + + +FD I+LDL L + G + Sbjct: 4 ILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLTI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R A + TP+ +L+ + DK+ GL+ GADDYI+KPFN EL+ARIRA++RR Sbjct: 64 CREVRAAGM-TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEAA 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 SR +V GDL ++ + EV G + LT +EY ++ELL+ T++ L+ + Sbjct: 123 SRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + ++R+KL Y+ T WG GY L Sbjct: 183 WGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYL 225 >gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GEDG+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229 >gi|157377007|ref|YP_001475607.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319381|gb|ABV38479.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 10/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L +E LK + VTD + L K +D +ILD+GL D G Sbjct: 1 MKLLLVEDNALLVEELEKQLKQAGYVTDVTDKAAEADYLLKETNYDCVILDIGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R I+TPV +L+ S +KV G +GADDY+ KPF+ +EL+ARI A+++R+ Sbjct: 61 ELLERWRNQGINTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQRAH 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + L +G ++++ + ++V V + LT E++++++ + L+K + Sbjct: 121 GKASLPSKELSFSG-VTLDENQQSVMVGSNLFELTAMEFRLLKIFLMSPQKLLSKSQLTD 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 180 KLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIF 219 >gi|326692942|ref|ZP_08229947.1| two-component system regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 137/222 (61%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIEDD LA +I L+ + +V+ D G DG + +D II DL L G Sbjct: 5 IKILLIEDDVNLADNIVGFLQ-DFADVHAVDNGLDGEFEGQESPYDLIISDLMLPGENGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR I TPV IL+ SS++DK+ G GADDY++KPF +EEL+ R++A++RR+ Sbjct: 64 EVIKHLREKNIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLLRVKALLRRAG 123 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ + I GD+ +NL+ + V+V G + L GKE+ ++ L+ KN +T++ + ++ Sbjct: 124 VYSEDNTIAVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++++++ LR+KL A G + I+T+ G++L Sbjct: 184 GIDSDTTINVVNIYLNNLRRKLE-AVGQHDLIKTLRNIGFIL 224 >gi|297153701|gb|ADI03413.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 227 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD L ++ + L++ +++V G + L ++ D ++LDLGL D+ G + Sbjct: 3 RVLVVEDDPQLVRALVINLQARHYDVDAAPDGTTALRLAASHQPDVVVLDLGLPDMDGVD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V++ALR PV +LS + E+KV L +GADDY++KPF+ +EL+AR+RA VRR+ Sbjct: 63 VIKALR-GWTPVPVLVLSARRASEEKVAALDAGADDYMTKPFSMDELLARLRASVRRTEA 121 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +L+ T D +V+L AK G +HLT E+ ++E+L +T+ L Sbjct: 122 GPTAPETTLVKTDDFTVDLTAKKAHRDGRDVHLTPTEWHLLEILVTNPGRLVTQRHLLQE 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V++ +LR+KL Y+ T G GY E Sbjct: 182 VWGASQSNKTNYLRVYMAQLRRKLEADPSHPRYLITEPGMGYRFEE 227 >gi|187476614|ref|YP_784637.1| two-component response regulator [Bordetella avium 197N] gi|18307419|emb|CAD21032.1| putative two-component regulator protein [Bordetella avium 197N] gi|115421200|emb|CAJ47705.1| two-component response regulator [Bordetella avium 197N] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 135/225 (60%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L ++E L++ +V G ++ + +DA++LD+ L G Sbjct: 1 MRILLVEDNPDLGDAVESKLRNAGHSVQWVRDGLAAVQWGQAEPWDALLLDISLPGKDGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR A + +PV +++ + IEDKV L GADDY+ KPF+ EL AR+RA++RR Sbjct: 61 AVLRELRAAGMESPVLVMTARAEIEDKVDMLDLGADDYLVKPFDLRELEARLRALMRRPG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S+ + G+L+++ + V V G + L +E++++E+L R+ T+ KE + ++D Sbjct: 121 GQTSSVAMFGNLTLDSANRGVWVNGQPLELGRREFRLLEILLTRQGQTVAKERLMAQVFD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D+ + +++ I +LR+KL++A+ I TV G GY +R++ Sbjct: 181 A-DDVSLNALELLISRLRRKLADAS---VDIVTVRGVGYQVRQDG 221 >gi|77460884|ref|YP_350391.1| two component heavy metal response transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384887|gb|ABA76400.1| tw-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 225 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V G +G+ L ++ I+LD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLHRGLTEQGYTVDRARDGVEGLHLALESDYAVIVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ +ED++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTARERVEDRIRGLRDGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQVSIADLWIDLISRKATRAGTRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPFDEK-LLHTIRGMGYVL 219 >gi|229110642|ref|ZP_04240207.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228672815|gb|EEL28094.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 236 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233 >gi|57866897|ref|YP_188567.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis RP62A] gi|242242696|ref|ZP_04797141.1| DNA-binding response regulator [Staphylococcus epidermidis W23144] gi|81674611|sp|Q5HPC3|ARLR_STAEQ RecName: Full=Response regulator ArlR gi|57637555|gb|AAW54343.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis RP62A] gi|242233832|gb|EES36144.1| DNA-binding response regulator [Staphylococcus epidermidis W23144] gi|319400771|gb|EFV88990.1| response regulator [Staphylococcus epidermidis FRI909] Length = 219 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 135/220 (61%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA IEL L EN+ V + + G+ G++ +D ILDL L +I G E+ Sbjct: 4 ILIVEDEQNLARFIELELTHENYTVDIENDGKAGLDKALSKPYDLYILDLMLPNINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K +TP+ I++ S DKV GL GADDYI KPF+ EEL+ARIRA++RR + Sbjct: 64 CRQIR-QKTTTPIIIITAKSETYDKVAGLDYGADDYIVKPFDIEELLARIRAVLRR-QPD 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L + G + ++ DA V V GH++ LT EY ++ +L+ +N + +E L+H++ Sbjct: 122 KDVLDING-IIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGYN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL K+ IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219 >gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V V G DGI + K D +ILD+ L G+ Sbjct: 1 MKILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMFKNEMPDLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R LR KIS P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+ Sbjct: 61 EVCRELR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +G + ++V +L+VNL V+++ I + KE +++ L+ N T+E L+H Sbjct: 119 QGEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDH 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV I ++R+K+ I+TVWG GY Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIEKDKYPWK-IKTVWGVGY 219 >gi|298291237|ref|YP_003693176.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927748|gb|ADH88557.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 220 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA I L V D FDA++LDL L D GF Sbjct: 1 MRILLVEDDAVLADGIRAGLWLAGLTVDAVGNCADAEAALGSSRFDAVVLDLMLPDGSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR +TPV +L+ + D+VRGL GADD++ KPF+ +EL AR+RA+VRR Sbjct: 61 DVLATLRARHDATPVIVLTALDETPDRVRGLDGGADDFLGKPFDLDELAARLRALVRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L+ G ++++ +V + + ++ +E+ ++ +L R +K LY Sbjct: 121 GRASPLLTHGTVALDPATLSVSIDEVPVPVSRREFAVLSMLMERPGVIRSKGELEERLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E E ++V+I LR KL G++ IETV G GY LR A Sbjct: 181 WQEEIESNTVEVYIHNLRAKL-----GRDLIETVRGLGYRLRVPA 220 >gi|74314598|ref|YP_313017.1| DNA-binding transcriptional regulator BasR [Shigella sonnei Ss046] gi|73858075|gb|AAZ90782.1| transcriptional regulatory protein [Shigella sonnei Ss046] gi|323164603|gb|EFZ50403.1| transcriptional regulatory protein basR/pmrA [Shigella sonnei 53G] Length = 222 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 19/234 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYTC-------DGVTTARMAEQSLEAGHYSLVVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 N +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|301054717|ref|YP_003792928.1| transcriptional regulator [Bacillus anthracis CI] gi|300376886|gb|ADK05790.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDELDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223 >gi|217970326|ref|YP_002355560.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217507653|gb|ACK54664.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 221 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD AL + L +E + V + G DG L +DA+ILDLGL PG Sbjct: 1 MRLLVVEDDAALGERLRTRLVAEGYAVDLARDGIDGAHLGATEPYDAVILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A PV IL+ ++V GLQ+GADDY+ KPF+ EEL+ARI+A++RR+ Sbjct: 61 TVLREWRAAANRVPVLILTARDGWAERVEGLQAGADDYLGKPFHVEELLARIQALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + GD ++ +A+ V+ G+ LT E++++ + L+K H+ Sbjct: 121 PVPDTELRAGDWRLD-EARQCLVDRAGNEQALTATEFRLLRYFMRHPDEVLSKTRLSEHV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 YD E + +I+V++ +LR L N IET G+GYV R Sbjct: 180 YDYDAERDSNVIEVYVRRLRGLLGN-----ERIETRRGQGYVFR 218 >gi|298491165|ref|YP_003721342.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233083|gb|ADI64219.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL IED+ +A+ + LK + F V D G++G E+D I+LD+ L G Sbjct: 1 MHILYIEDEAKIANFVCAGLKEQGFVVDYIDNGDEGYYRAMENEYDVIVLDIMLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L++LR A + PV +L+ + ++D++ GL GADDY+SKPF EEL+ARI A++RR Sbjct: 61 AILKSLRRAGRNLPVILLTARNELDDRLEGLNLGADDYLSKPFFVEELIARIHAVIRRIS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+++ G L+++ + V + LT +E+ ++E L T+ L H++ Sbjct: 121 GERQNILRVGSLALDRITREVTCNYQLVELTTREFNLLEYLMRSPGRVFTRTQILEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 P ++DV + +LRKK+ A G ++I++V GY+ R++ K Sbjct: 181 YDFNPNTNLVDVCVQRLRKKIEKVA-GDSWIDSVRSVGYLFRKSGK 225 >gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 124/218 (56%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++LKSE F + G+ +E + D I+LDL L G E Sbjct: 4 RILVVDDDTALAEMIGIVLKSEGFEPHFCATGDGAVEAFRSVRPDLILLDLMLPGKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ S D V+GL+SGADDY+ KPF +ELVAR+RA +R S Sbjct: 64 VCREIR-EESGVPIVMLTAKSDTMDVVKGLESGADDYVPKPFKPKELVARVRARLRMSEP 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ GD+S+++ TVE G + LT E++++ L+ + ++E L ++ Sbjct: 123 SAPEILKVGDVSIDVAGHTVEKAGKPVSLTPLEFELLVALARKPWQVFSRETLLEEVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPEKPDIVVTVRGVGY 220 >gi|188532493|ref|YP_001906290.1| DNA-binding transcriptional regulator BasR [Erwinia tasmaniensis Et1/99] gi|188027535|emb|CAO95382.1| Two-component system response regulator [Erwinia tasmaniensis Et1/99] Length = 220 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD L + L L E + V G + ++ ++LDLGL D G Sbjct: 1 MKILIVEDDALLQQGLSLALSGEGYAVDCAANAAQGAAFLQSGQYSLVVLDLGLPDRDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R + PV IL+ ++ D+V GL +GADDY+ KPF EL AR+RA++RR + Sbjct: 61 HLLRQWRKEQQDLPVLILTARDALSDRVDGLDAGADDYLIKPFALAELKARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L+ GD+S+NL ++ V V + +T KE+ ++ L +R T+ +E LY Sbjct: 121 GKSDNLLQHGDISLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D+ ++V I LR+KL GK I+TV G GY L E Sbjct: 181 WQDDTSSNTLEVHIHNLRRKL-----GKERIKTVRGVGYRLEE 218 >gi|121606845|ref|YP_984174.1| two component transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595814|gb|ABM39253.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 224 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L++ +V E L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRTLRASGAAADHVASGTEADAALLTNTEFDLLILDLGLPRMHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR + PV IL+ S+E++V+GL GADDY++KPF+ +EL AR+RA+VRR Sbjct: 61 LEVLKRLRARGSTLPVLILTAADSVEERVKGLDYGADDYMAKPFSLQELEARVRALVRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S I G L + + + GH + L+ +E ++E+L R ++K+ + L Sbjct: 121 MGGGSSTIKHGPLVYDQAGRVATIDGHMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E I+V+I +LRKK+ G I TV G GY L Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPVRIATVRGLGYCL 219 >gi|119384056|ref|YP_915112.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119373823|gb|ABL69416.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 220 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L++EDD L+ + ++ F + G G L +D ILDLGL +PG Sbjct: 1 MKCLIVEDDPMLSTQLAAAMRDGGFACDIAADGTQGEFLGSTEAYDLAILDLGLPGLPGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R ++ PV IL+ DKV G ++GADDY KPF EE+V R + ++RR+ Sbjct: 61 EVLTRWREGGVTMPVLILTARGDWTDKVAGFRAGADDYAVKPFRLEEVVIRAQTLLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ++I G L ++ + G + LT E +++ L +N +++ +HLYD Sbjct: 121 GHAQAVIKAGPLRLDTQLGVITRNGLALKLTAFETRILAYLIHHQNRVVSRSELSDHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + K I+V I +LRKK+ G IET G GYVLR A Sbjct: 181 SAADRDFKSIEVVIGRLRKKI-----GDGLIETRRGEGYVLRTAA 220 >gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1] gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1] gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 225 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 131/228 (57%), Gaps = 17/228 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIPG 59 +L+IED+K +A IEL L +E Y T++ DG+ L KF E D +ILDL L + G Sbjct: 7 VLVIEDEKDIARFIELELAAEG---YATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R +TP+ IL+ I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR Sbjct: 64 LEVARRIRKTS-NTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL +NLD + + G R+ L+ KE++++ELL+ ++ ++ Sbjct: 123 NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW 182 Query: 180 DGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE ++DV+I LR+KL G + I TV G GYVLRE Sbjct: 183 -----PEYTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLRE 224 >gi|291297174|ref|YP_003508572.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290472133|gb|ADD29552.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 224 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD +AH ++L L + V G G+ + D +ILDLGL D+ G E Sbjct: 3 RILLIEDDPEIAHLLQLELGEAGYTVDWASGGMSGLVRLREATPDLVILDLGLPDLDGGE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A P+ +L+ ++E KV L GADDYI KPF+ EL+ARI+ +R G Sbjct: 63 VARRIR-AGYEVPIIVLTAADAVERKVSLLSDGADDYIVKPFHPAELLARIQVQLRHREG 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q I G L V+L + V +G + L+ KE++++ LL R +++ HL+ Sbjct: 122 GEQ--ISVGGLEVHLAKRQVLFEGQELRLSPKEFELLSLLVSRAGKVFSRQEIEEHLWGR 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + ++DV I LR KL AG Y+ TV G GY LR+ Sbjct: 180 QLERDSNVVDVHIANLRAKLRE-AGAYGYLRTVRGVGYALRQR 221 >gi|70732373|ref|YP_262129.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] gi|68346672|gb|AAY94278.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] Length = 225 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 131/221 (59%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V + G +G+ + ++ I+LD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLHRGLTEQGYTVDLARDGVEGLHMALEGDYAVIVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ +ED+++GL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH I DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQISIADLWIDLISRKASRAGSRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL + + + T+ G GYVL Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFEQKLLHTIRGMGYVL 219 >gi|116625746|ref|YP_827902.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228908|gb|ABJ87617.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 235 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 122/217 (56%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD++L +I +ML+ E F G DG E + D +++DL L + G E+ Sbjct: 15 ILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSGTEI 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A+++TP+ +LS M DKV L+ GADDY+ KPF EL ARIRA++RR+ Sbjct: 75 CKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRRASTD 134 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A+ ++ ++ V+ + + V+ +G + LT EY ++ + LT++M LN ++ Sbjct: 135 ARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNSVWGYE 194 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 P + +D + KLR+KL + TV G GY Sbjct: 195 FFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGY 231 >gi|119384325|ref|YP_915381.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119374092|gb|ABL69685.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 220 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L++EDD L+ + ++ F + G G L +D ILDLGL +PG Sbjct: 1 MKCLIVEDDPMLSTQLAAAMRDGGFACDIAADGTQGEFLGSTEAYDLAILDLGLPGLPGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL R ++ PV IL+ DKV G ++GADDY KPF EE+V R + ++RR+ Sbjct: 61 EVLTRWREGGVTMPVLILTARGDWTDKVAGFRAGADDYAVKPFRLEEVVIRAQTLLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQ++I G L ++ + G + LT E +++ L +N +++ +HLYD Sbjct: 121 GHAQAVIKAGPLRLDTQLGVITRNGLALKLTAFETRILAYLIHHQNRVVSRSELSDHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + K I+V I +LRKK+ G IET G GYVLR A Sbjct: 181 SAADCDFKSIEVVIGRLRKKI-----GDGLIETRRGEGYVLRTAA 220 >gi|225377220|ref|ZP_03754441.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM 16841] gi|225210924|gb|EEG93278.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM 16841] Length = 232 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 137/234 (58%), Gaps = 15/234 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56 MR+LL ED++ L+ ++ ++LK N++V D DG E + E +D +ILD+ + Sbjct: 5 MRLLLAEDEEDLSRALVMVLKHNNYSV---DAVYDGAEALDYLENGGNYDGVILDIMMPK 61 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G VL+ +R S PV +L+ + I+D+V GL SGADDY+ KPF+ +EL+ARIRA+ Sbjct: 62 MDGITVLKTIRRHGNSVPVLLLTAKAEIDDRVEGLDSGADDYLPKPFSMKELLARIRAMT 121 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHR----IHLTGKEYQMIELLSLRKNTTLTKE 172 RR +++ GD+++N T ++ G I L GKEYQM+E+L + + Sbjct: 122 RRQTDTTDNVLTFGDIALN--RSTYQLTGPENPEGIRLAGKEYQMLEMLMSNPGQVICPD 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225 +F++ ++ E E ++ V+I LRKKL+ + G + I G GY L ++NA Sbjct: 180 LFMDKIWGYDSEAEQNVVWVYISYLRKKLT-SIGSQVKIRAARGLGYSLEKDNA 232 >gi|163940874|ref|YP_001645758.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863071|gb|ABY44130.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 224 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K L + + L +E ++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I+L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221 >gi|255036521|ref|YP_003087142.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254949277|gb|ACT93977.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 225 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ LA ++ L+ +++ V + G+ G ++ Y FD IILD+ L + G+ Sbjct: 1 MKILIVEDEPKLAGFLKRGLEEQSWEVELAYDGQVGKKMASNYRFDVIILDVNLPLLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 ++ + LR ++TP+ L+ + +I+DK+ G ++G DDY+ KPF EL+ARI+ + +R+ Sbjct: 61 DLAKQLRADGLTTPILFLTALGTIDDKLDGFEAGGDDYLVKPFEFRELIARIKVLSQRNS 120 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + ++ DL +NLD K G+RI LT KE+ ++E L + +++ + Sbjct: 121 VREQSSQVLTLADLELNLDEKVARRGGNRIDLTAKEFALLEYLMRNRGRVVSRVDIAEQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D R + +IDV+I LRKK+ K I TV G GY+ +E Sbjct: 181 WDIRFDTGTNVIDVYINFLRKKVDKDYPTK-LIHTVVGMGYIFKE 224 >gi|320179124|gb|EFW54083.1| Transcriptional regulatory protein basR/pmrA [Shigella boydii ATCC 9905] Length = 222 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKITGLDVGADDYLVKPFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|194367537|ref|YP_002030147.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194350341|gb|ACF53464.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 219 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD ALA + +L+ + V+ G + E+ + + A I+DLGL + G Sbjct: 1 MRILLAEDDTALAQRLLPLLEQAGYVVHAVTDGREAEEIGQIEDLQAAIVDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R S PV +L+ DK+ G +GADDY++KPF +ELV R+RA++RRS Sbjct: 61 SVIERWRGNGRSFPVLVLTARGRWHDKLAGFDAGADDYLTKPFQADELVLRLRALIRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + G L ++++A E+ G + L+ +E++++ + ++ ++D Sbjct: 121 GHASPRLRCGPLQLDVNAGRFELDGQALPLSPQEFRLLSYFIHHSGQVIGRDRLGEQVFD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G +P+ +DV + ++R+KL G + I+TV G+G+ L Sbjct: 181 GGHDPDSNALDVLLGRVRRKL-----GIDLIQTVRGQGWRL 216 >gi|229012406|ref|ZP_04169582.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229060799|ref|ZP_04198154.1| Two-component response regulator [Bacillus cereus AH603] gi|229134050|ref|ZP_04262870.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229170828|ref|ZP_04298442.1| Two-component response regulator [Bacillus cereus AH621] gi|228612666|gb|EEK69875.1| Two-component response regulator [Bacillus cereus AH621] gi|228649385|gb|EEL05400.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228718446|gb|EEL70078.1| Two-component response regulator [Bacillus cereus AH603] gi|228748857|gb|EEL98706.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 226 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K L + + L +E ++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I+L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223 >gi|254426949|ref|ZP_05040656.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196193118|gb|EDX88077.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 220 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD L I+ L++ F V +G+ K EFDA++LDLGL D G Sbjct: 1 MHILLIEDDALLGDGIQAGLQAMGFTVAWVTRAREGLAAWKSVEFDALVLDLGLPDQDGG 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L R A ++ PV IL+ +++D++ GLQ GADDY+ KPF+ EL AR++A++RRSR Sbjct: 61 QALCQWRDAGLTAPVLILTARDAVQDRIDGLQRGADDYLVKPFDLGELAARLQALLRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A LI G + V+ + V + + L +E ++ L + LT + + +Y Sbjct: 121 GQASPLIEHGRVRVDPFRQQVWLADQEVELQRREMALLLALLQSRGRLLTPDQLADRVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E + V I LR+KL G +ETV G GY L Sbjct: 181 WVDGVESNALAVHIHNLRRKL-----GSGIVETVRGGGYRL 216 >gi|75909659|ref|YP_323955.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703384|gb|ABA23060.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 224 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L +ED+ +A+ ++ LK + F V D G++G E+DAIILD+ + G Sbjct: 1 MNVLFVEDEAKIANFVQAGLKEQGFVVDYCDNGDEGYLRALDNEYDAIILDIMVPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV +L+ + ++D++ GL GADDYI+KPF EELVARI A+VRRS Sbjct: 61 SILKQLRQKGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELVARIHAVVRRSI 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+L+V G L ++ + V I LT +E+ ++E L T+ L H++ Sbjct: 121 GDRQNLLVIGTLKLDRITREVTCNQRVIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P ++DV I ++RKK+ + +IE++ G GY R Sbjct: 181 YDFNPNTNVVDVCIQRIRKKI-DPVDEAGWIESIRGVGYRFR 221 >gi|257790500|ref|YP_003181106.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|325829924|ref|ZP_08163382.1| response regulator receiver domain protein [Eggerthella sp. HGA1] gi|257474397|gb|ACV54717.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|325488091|gb|EGC90528.1| response regulator receiver domain protein [Eggerthella sp. HGA1] Length = 226 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 137/232 (59%), Gaps = 11/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56 M++L++EDD+ L++++ L+ + Y D DG E FY +D ++LD+ L + Sbjct: 1 MKLLIVEDDRLLSNALARSLR----DAYAVDQAFDGEE-GLFYAAQDVYDLVVLDVMLPE 55 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 GF VL ALR + TPV +L+ S+ DK+RGL+SGADDY++KPF+++EL+ARI AI+ Sbjct: 56 RDGFSVLEALRAQGVDTPVLMLTARSATADKLRGLRSGADDYLAKPFDRDELLARIEAIL 115 Query: 117 RRSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR+ G IV +L+++ + + + L GK+Y ++E L + + ++KE Sbjct: 116 RRTTGRRDVGIVAFKELALHTRTRQAFIADEPLALKGKQYDILEYLVSHQGSLISKERLF 175 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++ + +++V++ LRK L+ G YI+T+ G GY+ E+ D Sbjct: 176 DKIWGFMSDTSSNVVEVYVSALRKALA-PTGYDRYIKTIRGAGYLFTEDDHD 226 >gi|121604441|ref|YP_981770.1| two component transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120593410|gb|ABM36849.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 222 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL EDD L + L+ F V +V D GE + ++A +LDLGL G Sbjct: 1 MRILLAEDDSLLGDGLRAGLRQLGFQVDWVRD-GEAAERELRAQPYEAAVLDLGLPRKDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL A+R + + TPV +L+ ++ +++RGL +GADDY+ KP + EL AR+RA+VRR+ Sbjct: 60 LDVLAAVRRSGVKTPVLVLTARDAVPERIRGLDAGADDYVVKPVDLHELAARLRALVRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q + D+ ++ ++TV G + L+ +E+ +++ L + L++E LY Sbjct: 120 HGQPQERLSAQDVELDPASRTVRKAGEPVTLSTREFDLLQAFMLSADRVLSREQLEQQLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E I+V I LR+KL G I TV G GY+L++ Sbjct: 180 SWGQEVESNAIEVHIHNLRRKL-----GPALIHTVRGVGYMLQKG 219 >gi|332527397|ref|ZP_08403453.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111806|gb|EGJ11786.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 219 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L + L F V +V D GE + A +LDLGL G Sbjct: 1 MRILLVEDDPLLGDGLRAGLTQAGFQVDWVRD-GEAASRELRSAVHAAAVLDLGLPRKDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL R A + PV +L+ ++ D+V GL SGADDY+ KP + +EL AR+RA++RR+ Sbjct: 60 LEVLAETRRAGVRLPVLVLTARDAVSDRVIGLDSGADDYVVKPVDLDELAARLRALIRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q L+ G++ ++ A+TV G + L+ +E+ ++ L L LT+E HLY Sbjct: 120 HGQTQDLLAAGEVVLDPAARTVTRGGEPVVLSQREFDLLHALMLNAGRVLTREQLEQHLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E ++V + LR+KL G ++TV G GY+L Sbjct: 180 RWGREVESNAVEVHVHHLRRKL-----GAELVQTVRGVGYLL 216 >gi|322385478|ref|ZP_08059122.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270216|gb|EFX53132.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 224 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 131/222 (59%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + + D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQIFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +STPV I++ SI+DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGVSTPVLIMTAKESIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++VNL + V G + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDVTVNLSTNSTLVDGREVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ K+RKKL A N ++T+ GY+L+ Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTAFANN-LQTLRSVGYILK 221 >gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 223 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V V G DGI + K D +ILD+ L G+ Sbjct: 1 MKILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R LR KIS P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+ Sbjct: 61 EVCRELR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +G + +++ +L+VNL V+++ I + KE +++ L+ N T+E L+H Sbjct: 119 QGEVNDEKVVIYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDH 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV I ++R+K+ I+TVWG GY Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIEKDKYPWK-IKTVWGVGY 219 >gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115] gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115] Length = 234 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 131/228 (57%), Gaps = 17/228 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIPG 59 +L+IED+K +A IEL L +E Y T++ DG+ L KF E D +ILDL L + G Sbjct: 16 VLVIEDEKDIARFIELELAAEG---YATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDG 72 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R +TP+ IL+ I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR Sbjct: 73 LEVARRIRKTS-NTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV 131 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL +NLD + + G R+ L+ KE++++ELL+ ++ ++ Sbjct: 132 NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW 191 Query: 180 DGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE ++DV+I LR+KL G + I TV G GYVLRE Sbjct: 192 -----PEYTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLRE 233 >gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 226 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LRV + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLRV-RSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|216538|dbj|BAA03143.1| BasR [Escherichia coli] Length = 222 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDTVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|221069936|ref|ZP_03546041.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220714959|gb|EED70327.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 257 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 129/233 (55%), Gaps = 15/233 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ +A + L ++ V V + FDA++LDLGL+D G Sbjct: 27 MRILVVEDNEGIAAGLRANLMQRSYAVDVCASVAEAWHALSTERFDAVLLDLGLSDGDGS 86 Query: 61 EVLRALRV----------AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110 EV+R LR+ +TPV IL+ ++D+V GL GADDY+ KPF+ +EL A Sbjct: 87 EVVRRLRLQTGRPGVPQLPDPATPVLILTARDQVQDRVAGLNLGADDYLVKPFDMDELEA 146 Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R+RA++RR+ G A +I DL V+ A+T+ G ++ ++ +E+ ++ L L + L+ Sbjct: 147 RLRAMMRRAAGQASPVIRHADLEVDPAARTIRQAGQKVEVSPREFAVLWALLLARGRVLS 206 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + HLY D E ++V++ LRKKL G+ I T+ G GY + + Sbjct: 207 RPQIEEHLYSWGDTVESNAVEVYVHHLRKKL-----GQKIIVTMRGVGYFMPQ 254 >gi|329114231|ref|ZP_08242993.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001] gi|326696307|gb|EGE47986.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001] Length = 243 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 1/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD +A I L + F V G+ G+E E D +++D L + G V Sbjct: 22 VLLVEDDSTIAEEIAAELTARGFKVLHEATGDAGLEAALRLEADVMVVDRLLPGLDGLSV 81 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R I PV +LS +S+++D+V GL++G DDY++KPF EELVARI A++RR Sbjct: 82 IETMRQQGIRLPVLVLSALSAVDDRVTGLKAGGDDYLTKPFAIEELVARIEALLRRPDDT 141 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G + ++L + V G I L +E++++E L R LT+ M L ++ R Sbjct: 142 RSTKLHLGPIDMDLIERRVWRDGREIELLPREFRLLEYLMRRPGQVLTRSMLLEDVWQYR 201 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P ++DV I KLR+K+ + G + IE++ G G+ LR Sbjct: 202 FIPRTNLVDVHIGKLRRKI-DGPGEEPLIESIRGTGFRLR 240 >gi|218702777|ref|YP_002410406.1| DNA-binding transcriptional regulator BasR [Escherichia coli IAI39] gi|300940585|ref|ZP_07155153.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|331650141|ref|ZP_08351214.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli M605] gi|56540585|gb|AAV92746.1| PmrA [Escherichia coli] gi|56540587|gb|AAV92747.1| PmrA [Escherichia coli] gi|56540591|gb|AAV92749.1| PmrA [Escherichia coli] gi|56540593|gb|AAV92750.1| PmrA [Escherichia coli] gi|56540595|gb|AAV92751.1| PmrA [Escherichia coli] gi|56540639|gb|AAV92773.1| PmrA [Escherichia coli] gi|56540641|gb|AAV92774.1| PmrA [Escherichia coli] gi|218372763|emb|CAR20641.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli IAI39] gi|281181203|dbj|BAI57533.1| two-component response regulator [Escherichia coli SE15] gi|300454642|gb|EFK18135.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|330908446|gb|EGH36965.1| transcriptional regulatory protein basR/pmrA [Escherichia coli AA86] gi|331041086|gb|EGI13243.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli M605] Length = 222 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|152995826|ref|YP_001340661.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150836750|gb|ABR70726.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 227 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 129/220 (58%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED + L +I L S V + G+ EL K+ D I+LDL L + G Sbjct: 1 MRILVVEDTQVLGQAICERLTSLGHGVDLIGDGKRADELLKYQSVDLILLDLNLPGLSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR TPV IL+ IED++R L +GADDY++KPF+ EL AR RA++RR + Sbjct: 61 QLLQKLRQRDDDTPVLILTARDQIEDRIRLLDAGADDYLTKPFDFGELEARCRALLRRKQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A ++ G++ VN D++ V + G +T +E++++E+ L+K+ +HL++ Sbjct: 121 GYATNITEHGNIVVNRDSRQVFIDGELTVITNREFRLLEIFLGHLGRVLSKDEITDHLFN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + P I++++ +LRKK+ G I T+ G GYV Sbjct: 181 FNETPGPNAIELYVGRLRKKMGQ---GDLVISTLRGIGYV 217 >gi|323706070|ref|ZP_08117639.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534514|gb|EGB24296.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 135/224 (60%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K +A +++ L+ E ++V + G G+ +D IILDL L + GF V Sbjct: 5 ILIIEDEKRIARFLQIELEREGYSVTLEYSGNSGLREALDGNYDLIILDLMLPGLDGFSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 LR LR K STPV ILS ++DKV GL GADDY++KPF+ EEL+ARIR ++R+ ++ Sbjct: 65 LRELR-KKSSTPVIILSAKDEVKDKVFGLDIGADDYLTKPFSIEELMARIRNVLRKNAKS 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +A L+ G + +D T EV+ G +I LT KE+++++ L + LT+E L +++ Sbjct: 124 NANKLVYDG---ITMDLSTYEVKRDGIKIELTKKEFELLKYLIINSEIVLTRENILENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E I+DV+I LR K+ K I+T+ G GY LR+ Sbjct: 181 GYNYIGETNIVDVYIRYLRSKIDEPFDNK-LIQTIRGVGYSLRK 223 >gi|71733992|ref|YP_273462.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487334|ref|ZP_05641375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289647322|ref|ZP_06478665.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298485866|ref|ZP_07003942.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554545|gb|AAZ33756.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159555|gb|EFI00600.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320329839|gb|EFW85827.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330867883|gb|EGH02592.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874409|gb|EGH08558.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330890476|gb|EGH23137.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. mori str. 301020] gi|331009063|gb|EGH89119.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L + IILD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ ++D++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH I DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219 >gi|326799051|ref|YP_004316870.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326549815|gb|ADZ78200.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIEDD+ LA I L+ + F+V G + + + + FD IILD+ L D+ GF Sbjct: 2 VKILLIEDDRRLASFIRKGLEEQLFSVSCVSSGYEALAVTQDIYFDLIILDIMLPDVSGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ A+R KI++P+ ILS + + E+KV+GLQ+GADDY+ KPF+ EEL+ARI A +RR Sbjct: 62 QICTAIRERKITSPLIILSALDNPEEKVKGLQAGADDYLGKPFHFEELLARINAQLRRKS 121 Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L V DL VN+ + + G I L+ +EY+++ L + +++ + Sbjct: 122 FEKGILDVQKYADLEVNIAEQGAKRAGKNILLSPREYKLLLFLLNNRERVVSRTQIAEAV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D ++DV+I LR K+ I TV GRGY+L++ Sbjct: 182 WDIHFNTHTNVVDVYINYLRNKIDKGFAAP-LIHTVKGRGYMLKQ 225 >gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1] gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1] Length = 223 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TP+ L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 NLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 223 >gi|311104579|ref|YP_003977432.1| transcriptional regulator TctD 2 [Achromobacter xylosoxidans A8] gi|310759268|gb|ADP14717.1| transcriptional regulatory protein TctD 2 [Achromobacter xylosoxidans A8] Length = 235 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 124/221 (56%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD LA ++ L+ V + G + ++ FD +ILD+GL + GF Sbjct: 1 MRILVIEDDADLADALVRRLRRLGHAVDCQNDGLSADGVLQYETFDLVILDIGLPRMSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR TPV L+ IED+V L +GADDY++KPF+ EL AR RA++RR Sbjct: 61 DILHRLRDRGSKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLRRPS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ G+L ++ A+ V + G RI L +EY ++E+L N ++K + L+ Sbjct: 121 AQAAGVLRFGELVIDSAARQVTLAGQRIELPKREYSLLEILLAGMNRAVSKTEIAHKLFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ I+V+I +LR+KL G IET G GY+L Sbjct: 181 FDDDAAPNAIEVYIARLRRKLE---GSPLRIETQRGTGYLL 218 >gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484] gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family [Thermocrinis albus DSM 14484] Length = 226 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 127/221 (57%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD L + L+ E F V G + +D +ILD+ L G + Sbjct: 3 RILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENYDLVILDIMLPKFDGMK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K PV +++ S IEDKV GL +GADDYI+KPF+ +EL ARI+A++RR R Sbjct: 63 VCRKIRETK-DIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVLRRYR- 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +I+ GDL ++ A V +G +IHLT +E+++++LL+ N +++E ++ Sbjct: 121 KKEGVIMVGDLRIDPSAVEVTYRGQKIHLTRREFELLKLLAENANRVVSREEIYAKVWGY 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I+DV+I LR KL + I+TV G GY+LR Sbjct: 181 SHEEGSNIVDVYIKNLRNKLGDKP--PRLIQTVRGYGYILR 219 >gi|88812632|ref|ZP_01127879.1| two-component system regulatory protein [Nitrococcus mobilis Nb-231] gi|88790048|gb|EAR21168.1| two-component system regulatory protein [Nitrococcus mobilis Nb-231] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 132/219 (60%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L+IEDD+ L ++ L S V G +G + Y D ++DLGL + G Sbjct: 1 MRALIIEDDRHLLEQLKEHLASAGLVVDTAADGREGCHMAIEYPLDVAVIDLGLPHVSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++A R A P+ IL+ + +DKV GL++GADDY+ KPF+ EEL+AR+RA++RR+ Sbjct: 61 EIIKATRAAGRRFPILILTARTRWQDKVAGLEAGADDYLVKPFHPEELLARLRALLRRTS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ L++ G + +++ ++ V + G + LTG EY+++E L L ++K HLY Sbjct: 121 GWAQPLLICGPVRLDISSQAVMLDGRPVALTGFEYRVLEYLMLHAGEVVSKTTLTEHLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +I+VF+ +LR+KL + G IET+ GRGY Sbjct: 181 EDGDRDSNVIEVFVRRLRRKL-DPDGRLAAIETLRGRGY 218 >gi|15804705|ref|NP_290746.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H7 EDL933] gi|15834349|ref|NP_313122.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H7 str. Sakai] gi|110644471|ref|YP_672201.1| DNA-binding transcriptional regulator BasR [Escherichia coli 536] gi|157158920|ref|YP_001465612.1| DNA-binding transcriptional regulator BasR [Escherichia coli E24377A] gi|157163578|ref|YP_001460896.1| DNA-binding transcriptional regulator BasR [Escherichia coli HS] gi|168748031|ref|ZP_02773053.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4113] gi|168755294|ref|ZP_02780301.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4401] gi|168760973|ref|ZP_02785980.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4501] gi|168766383|ref|ZP_02791390.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4486] gi|168774482|ref|ZP_02799489.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4196] gi|168780536|ref|ZP_02805543.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4076] gi|168784741|ref|ZP_02809748.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC869] gi|168798215|ref|ZP_02823222.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC508] gi|170021889|ref|YP_001726843.1| DNA-binding transcriptional regulator BasR [Escherichia coli ATCC 8739] gi|170679832|ref|YP_001746506.1| DNA-binding transcriptional regulator BasR [Escherichia coli SMS-3-5] gi|188494489|ref|ZP_03001759.1| DNA-binding response regulator BasR [Escherichia coli 53638] gi|191165619|ref|ZP_03027459.1| DNA-binding response regulator BasR [Escherichia coli B7A] gi|191173347|ref|ZP_03034876.1| DNA-binding response regulator BasR [Escherichia coli F11] gi|193063133|ref|ZP_03044225.1| DNA-binding response regulator BasR [Escherichia coli E22] gi|193067895|ref|ZP_03048861.1| DNA-binding response regulator BasR [Escherichia coli E110019] gi|194426834|ref|ZP_03059387.1| DNA-binding response regulator BasR [Escherichia coli B171] gi|194437292|ref|ZP_03069390.1| DNA-binding response regulator BasR [Escherichia coli 101-1] gi|195935902|ref|ZP_03081284.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H7 str. EC4024] gi|208808477|ref|ZP_03250814.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4206] gi|208813842|ref|ZP_03255171.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4045] gi|208820064|ref|ZP_03260384.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4042] gi|209397598|ref|YP_002273657.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4115] gi|217325375|ref|ZP_03441459.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. TW14588] gi|218556665|ref|YP_002389579.1| DNA-binding transcriptional regulator BasR [Escherichia coli IAI1] gi|218697815|ref|YP_002405482.1| DNA-binding transcriptional regulator BasR [Escherichia coli 55989] gi|218707728|ref|YP_002415247.1| DNA-binding transcriptional regulator BasR [Escherichia coli UMN026] gi|253775258|ref|YP_003038089.1| DNA-binding transcriptional regulator BasR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037123|ref|ZP_04871200.1| two component transcriptional regulator [Escherichia sp. 1_1_43] gi|254796135|ref|YP_003080972.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H7 str. TW14359] gi|256024989|ref|ZP_05438854.1| DNA-binding transcriptional regulator BasR [Escherichia sp. 4_1_40B] gi|260846908|ref|YP_003224686.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O103:H2 str. 12009] gi|260858217|ref|YP_003232108.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O26:H11 str. 11368] gi|260870866|ref|YP_003237268.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O111:H- str. 11128] gi|261225234|ref|ZP_05939515.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli O157:H7 str. FRIK2000] gi|261255514|ref|ZP_05948047.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O157:H7 str. FRIK966] gi|291285529|ref|YP_003502347.1| DNA-binding response regulator BasR [Escherichia coli O55:H7 str. CB9615] gi|293402745|ref|ZP_06646842.1| DNA-binding transcriptional regulator BasR [Escherichia coli FVEC1412] gi|293407838|ref|ZP_06651678.1| DNA-binding transcriptional regulator BasR [Escherichia coli B354] gi|293417619|ref|ZP_06660241.1| two-component system [Escherichia coli B185] gi|293476410|ref|ZP_06664818.1| two-component system [Escherichia coli B088] gi|298378274|ref|ZP_06988158.1| two-component system [Escherichia coli FVEC1302] gi|300818032|ref|ZP_07098245.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300821199|ref|ZP_07101347.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300897526|ref|ZP_07115941.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300906439|ref|ZP_07124136.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300924382|ref|ZP_07140357.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300930477|ref|ZP_07145878.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300947736|ref|ZP_07161900.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300954156|ref|ZP_07166622.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300994998|ref|ZP_07181022.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|301017387|ref|ZP_07182140.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301021686|ref|ZP_07185674.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301302808|ref|ZP_07208937.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301330508|ref|ZP_07223121.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301644716|ref|ZP_07244694.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|307140806|ref|ZP_07500162.1| DNA-binding transcriptional regulator BasR [Escherichia coli H736] gi|307312050|ref|ZP_07591687.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309796881|ref|ZP_07691283.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|312974084|ref|ZP_07788255.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 1827-70] gi|331644860|ref|ZP_08345977.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli H736] gi|331655943|ref|ZP_08356931.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli M718] gi|331665779|ref|ZP_08366673.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA143] gi|331670976|ref|ZP_08371810.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA271] gi|331680240|ref|ZP_08380899.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli H591] gi|331681048|ref|ZP_08381685.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli H299] gi|12519083|gb|AAG59312.1|AE005644_6 transcriptional regulatory protein 2-component regulatory system member [Escherichia coli O157:H7 str. EDL933] gi|13364572|dbj|BAB38518.1| 2-component regulatory system regulatory protein BasR [Escherichia coli O157:H7 str. Sakai] gi|56540527|gb|AAV92717.1| PmrA [Escherichia coli] gi|56540529|gb|AAV92718.1| PmrA [Escherichia coli] gi|56540531|gb|AAV92719.1| PmrA [Escherichia coli] gi|56540533|gb|AAV92720.1| PmrA [Escherichia coli] gi|56540535|gb|AAV92721.1| PmrA [Escherichia coli] gi|56540537|gb|AAV92722.1| PmrA [Escherichia coli] gi|56540539|gb|AAV92723.1| PmrA [Escherichia coli] gi|56540541|gb|AAV92724.1| PmrA [Escherichia coli] gi|56540543|gb|AAV92725.1| PmrA [Escherichia coli] gi|56540545|gb|AAV92726.1| PmrA [Escherichia coli] gi|56540547|gb|AAV92727.1| PmrA [Escherichia coli] gi|56540549|gb|AAV92728.1| PmrA [Escherichia coli] gi|56540551|gb|AAV92729.1| PmrA [Escherichia coli] gi|56540553|gb|AAV92730.1| PmrA [Escherichia coli] gi|56540555|gb|AAV92731.1| PmrA [Escherichia coli] gi|56540557|gb|AAV92732.1| PmrA [Escherichia coli] gi|56540559|gb|AAV92733.1| PmrA [Escherichia coli] gi|56540561|gb|AAV92734.1| PmrA [Escherichia coli] gi|56540565|gb|AAV92736.1| PmrA [Escherichia coli] gi|56540567|gb|AAV92737.1| PmrA [Escherichia coli] gi|56540569|gb|AAV92738.1| PmrA [Escherichia coli] gi|56540571|gb|AAV92739.1| PmrA [Escherichia coli] gi|56540573|gb|AAV92740.1| PmrA [Escherichia coli] gi|56540575|gb|AAV92741.1| PmrA [Escherichia coli] gi|56540579|gb|AAV92743.1| PmrA [Escherichia coli] gi|56540581|gb|AAV92744.1| PmrA [Escherichia coli] gi|56540583|gb|AAV92745.1| PmrA [Escherichia coli] gi|56540589|gb|AAV92748.1| PmrA [Escherichia coli] gi|56540597|gb|AAV92752.1| PmrA [Escherichia coli] gi|56540599|gb|AAV92753.1| PmrA [Escherichia coli] gi|56540603|gb|AAV92755.1| PmrA [Escherichia coli] gi|56540605|gb|AAV92756.1| PmrA [Escherichia coli] gi|56540607|gb|AAV92757.1| PmrA [Escherichia coli] gi|56540643|gb|AAV92775.1| PmrA [Escherichia coli] gi|56540645|gb|AAV92776.1| PmrA [Escherichia coli] gi|56540647|gb|AAV92777.1| PmrA [Escherichia coli] gi|56540649|gb|AAV92778.1| PmrA [Escherichia coli] gi|56540651|gb|AAV92779.1| PmrA [Escherichia coli] gi|110346063|gb|ABG72300.1| transcriptional regulatory protein BasR/PmrA [Escherichia coli 536] gi|157069258|gb|ABV08513.1| DNA-binding response regulator BasR [Escherichia coli HS] gi|157080950|gb|ABV20658.1| DNA-binding response regulator BasR [Escherichia coli E24377A] gi|169756817|gb|ACA79516.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|170517550|gb|ACB15728.1| DNA-binding response regulator BasR [Escherichia coli SMS-3-5] gi|187769816|gb|EDU33660.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4196] gi|188017496|gb|EDU55618.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4113] gi|188489688|gb|EDU64791.1| DNA-binding response regulator BasR [Escherichia coli 53638] gi|189001669|gb|EDU70655.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4076] gi|189357501|gb|EDU75920.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4401] gi|189364240|gb|EDU82659.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4486] gi|189368662|gb|EDU87078.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4501] gi|189374840|gb|EDU93256.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC869] gi|189379213|gb|EDU97629.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC508] gi|190904314|gb|EDV64023.1| DNA-binding response regulator BasR [Escherichia coli B7A] gi|190906323|gb|EDV65933.1| DNA-binding response regulator BasR [Escherichia coli F11] gi|192931392|gb|EDV83994.1| DNA-binding response regulator BasR [Escherichia coli E22] gi|192958870|gb|EDV89307.1| DNA-binding response regulator BasR [Escherichia coli E110019] gi|194415170|gb|EDX31439.1| DNA-binding response regulator BasR [Escherichia coli B171] gi|194423848|gb|EDX39837.1| DNA-binding response regulator BasR [Escherichia coli 101-1] gi|208728278|gb|EDZ77879.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4206] gi|208735119|gb|EDZ83806.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4045] gi|208740187|gb|EDZ87869.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4042] gi|209158998|gb|ACI36431.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4115] gi|209750778|gb|ACI73696.1| 2-component regulatory system regulatory protein BasR [Escherichia coli] gi|209750780|gb|ACI73697.1| 2-component regulatory system regulatory protein BasR [Escherichia coli] gi|209750782|gb|ACI73698.1| 2-component regulatory system regulatory protein BasR [Escherichia coli] gi|209750784|gb|ACI73699.1| 2-component regulatory system regulatory protein BasR [Escherichia coli] gi|209750786|gb|ACI73700.1| 2-component regulatory system regulatory protein BasR [Escherichia coli] gi|217321596|gb|EEC30020.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. TW14588] gi|218354547|emb|CAV01439.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli 55989] gi|218363434|emb|CAR01088.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli IAI1] gi|218434825|emb|CAR15760.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli UMN026] gi|226840229|gb|EEH72231.1| two component transcriptional regulator [Escherichia sp. 1_1_43] gi|242379640|emb|CAQ34462.1| BasR transcriptional regulator [Escherichia coli BL21(DE3)] gi|253326302|gb|ACT30904.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253980104|gb|ACT45774.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli BL21(DE3)] gi|254595535|gb|ACT74896.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli O157:H7 str. TW14359] gi|257756866|dbj|BAI28368.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O26:H11 str. 11368] gi|257762055|dbj|BAI33552.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O103:H2 str. 12009] gi|257767222|dbj|BAI38717.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O111:H- str. 11128] gi|290765402|gb|ADD59363.1| DNA-binding response regulator BasR [Escherichia coli O55:H7 str. CB9615] gi|291320863|gb|EFE60305.1| two-component system [Escherichia coli B088] gi|291429660|gb|EFF02674.1| DNA-binding transcriptional regulator BasR [Escherichia coli FVEC1412] gi|291430337|gb|EFF03335.1| two-component system [Escherichia coli B185] gi|291472089|gb|EFF14571.1| DNA-binding transcriptional regulator BasR [Escherichia coli B354] gi|298280608|gb|EFI22109.1| two-component system [Escherichia coli FVEC1302] gi|299882731|gb|EFI90942.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300304895|gb|EFJ59415.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300318845|gb|EFJ68629.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300358747|gb|EFJ74617.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300397919|gb|EFJ81457.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300401775|gb|EFJ85313.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300419416|gb|EFK02727.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300452682|gb|EFK16302.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300461640|gb|EFK25133.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300526088|gb|EFK47157.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300529442|gb|EFK50504.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300842028|gb|EFK69788.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|300843533|gb|EFK71293.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301076970|gb|EFK91776.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|306907857|gb|EFN38358.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|308119522|gb|EFO56784.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|309704580|emb|CBJ03930.1| two-component response regulator [Escherichia coli ETEC H10407] gi|310331618|gb|EFP98874.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 1827-70] gi|315063430|gb|ADT77757.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli W] gi|315253794|gb|EFU33762.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|315617492|gb|EFU98098.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 3431] gi|320175437|gb|EFW50537.1| Transcriptional regulatory protein basR/pmrA [Shigella dysenteriae CDC 74-1112] gi|320190755|gb|EFW65405.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli O157:H7 str. EC1212] gi|320200754|gb|EFW75340.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli EC4100B] gi|320638872|gb|EFX08518.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H7 str. G5101] gi|320644241|gb|EFX13306.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H- str. 493-89] gi|320649559|gb|EFX18083.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H- str. H 2687] gi|320654955|gb|EFX22916.1| DNA-binding transcriptional regulator BasR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660462|gb|EFX27923.1| DNA-binding transcriptional regulator BasR [Escherichia coli O55:H7 str. USDA 5905] gi|320665732|gb|EFX32769.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H7 str. LSU-61] gi|323155841|gb|EFZ42009.1| transcriptional regulatory protein basR/pmrA [Escherichia coli EPECa14] gi|323162098|gb|EFZ47967.1| transcriptional regulatory protein basR/pmrA [Escherichia coli E128010] gi|323171538|gb|EFZ57184.1| transcriptional regulatory protein basR/pmrA [Escherichia coli LT-68] gi|323176002|gb|EFZ61594.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 1180] gi|323182218|gb|EFZ67628.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 1357] gi|323935427|gb|EGB31765.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323940032|gb|EGB36226.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323946107|gb|EGB42142.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323960387|gb|EGB56024.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323969906|gb|EGB65184.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|324015821|gb|EGB85040.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|324118681|gb|EGC12573.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|326346590|gb|EGD70324.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli O157:H7 str. 1044] gi|331035835|gb|EGI08073.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli H736] gi|331046297|gb|EGI18387.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli M718] gi|331056830|gb|EGI28824.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA143] gi|331061890|gb|EGI33815.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA271] gi|331071703|gb|EGI43039.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli H591] gi|331081269|gb|EGI52430.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli H299] gi|332083467|gb|EGI88691.1| transcriptional regulatory protein basR/pmrA [Shigella boydii 5216-82] gi|332346120|gb|AEE59454.1| transcriptional regulatory protein BasR [Escherichia coli UMNK88] Length = 222 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|330448429|ref|ZP_08312077.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492620|dbj|GAA06574.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 219 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 11/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I L+ +V +L DGI+ +DAI+LDLGL + Sbjct: 1 MKILVVEDEVTLGEQIIAGLEQSG---WVAELSSDGIDALYRATSEPWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R ++ PV ILS + + +V GL +GADDY++KPF ELVAR+RA +R Sbjct: 58 DGITVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G+A +I GDLS++ V QG + LT E++++ L + +++ + H Sbjct: 118 RSTGNASPVIQAGDLSLDTRTSKVTWQGQLVDLTALEFKVLSYLMHNTDKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +Y + + I+VFI ++R+K+ G + I+TV G GY Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRRKI-----GNDVIKTVRGLGY 214 >gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TP+ L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 66 EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 NLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229 >gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662] gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L ++ L E++ G D ++ ++D IILD+ L I G Sbjct: 1 MRLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R TPV L+ IED+V+GL GADDY+ KPF+ EEL+AR+R ++RR Sbjct: 61 ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL ++ ++K V +I L+ KE+ ++E + +N L++E H ++ Sbjct: 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++DV+I LRKK+ G K I TV G GYVLR+ Sbjct: 181 YDFEGGSNVVDVYIRYLRKKIDEGFGCK-LIHTVRGVGYVLRK 222 >gi|28868517|ref|NP_791136.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213968347|ref|ZP_03396491.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|301383478|ref|ZP_07231896.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato Max13] gi|302129901|ref|ZP_07255891.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851755|gb|AAO54831.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213926985|gb|EEB60536.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|331015193|gb|EGH95249.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L + +ILD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ ++D++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH I DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPLQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219 >gi|187928922|ref|YP_001899409.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|309783197|ref|ZP_07677913.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp. 5_7_47FAA] gi|187725812|gb|ACD26977.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|308918075|gb|EFP63756.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp. 5_7_47FAA] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG L ++D +ILD+ L D+ G+ Sbjct: 1 MKLLVVEDESKTGEYLQQGLSEAGFVVDLARNGLDGRHLAMTGDYDLLILDVMLPDLEGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L ALR +++ PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R ++R R Sbjct: 61 QILHALRSTELAVPVLFLTARDSVADRVKGLELGADDYMVKPFAFAELLARVRTLLR--R 118 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A SL I DL ++L + G RI LT KE+ ++ELL+ R L + + + Sbjct: 119 GSAPSLAERIQVADLVLDLTRRRASRGGQRITLTSKEFSLLELLARRHGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +IDV I +LR K+ + K I TV G GYVL Sbjct: 179 VWDMNFDSDTNVIDVAIRRLRAKIDDNFEPK-LIHTVRGMGYVL 221 >gi|326801440|ref|YP_004319259.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326552204|gb|ADZ80589.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 227 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 132/226 (58%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+K LA SI L EN+ + + E F+ +D IILD+ L D G Sbjct: 1 MKILVIEDNKELASSIHDYLAGENYICELAFSATEAREKLLFFTYDCIILDIMLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L ++ I+ + I+S +++DK++GL+ GADDY++KPF+ EL AR+RAI RR Sbjct: 61 ELLNLVKEEHINGSILIISAKGALDDKIKGLEEGADDYLTKPFHLPELHARLRAIHRRKN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 ++I ++++N + +++ G + T KE++++ + KN L+++ NHL+ Sbjct: 121 LDGNNIISFKEITLNTNTFELKIHGKALDATRKEFELLLYFLVNKNRVLSRQAIANHLWG 180 Query: 180 DGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D D V + + LRKK+ N AGG +YI+T++G GY N Sbjct: 181 DYTDNLSNVDFVYQHVKNLRKKI-NMAGGDDYIDTIYGLGYKFNTN 225 >gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 248 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 132/225 (58%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + V G + + ++ DA++LD+ L D G Sbjct: 23 VRVLVVDDEPNLTELLGMALRYEGWEVRAAATGMQAVRAAREFDPDAVVLDMMLPDFDGL 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVLR +R + PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RR+ Sbjct: 83 EVLRRMRTDNPNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRRTT 142 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S++V GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 143 MSVSSSDSVLVVGDLTLDEDSHEVYRAGEEIHLTATEFELLRYLMRNPRRVLSKAQILDR 202 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ AG I T+ G GYVLR Sbjct: 203 VWNYDFGGQANVVELYISYLRKKVD--AGRDPMIHTMRGAGYVLR 245 >gi|218231947|ref|YP_002367927.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218159904|gb|ACK59896.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + + I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKITRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221 >gi|294340536|emb|CAZ88920.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L + L+ V +V D G + + E++ ++LDLGL G Sbjct: 1 MRILLVEDDHMLGAATREALRDATHAVDWVLD-GASALSAAQGGEYELMLLDLGLPKRDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ALR + + P+ IL+ ++ED+VRGL GADDY+ KPF EL+ARIRA+ RR Sbjct: 60 LSVLQALRQSGSNLPILILAARDALEDRVRGLDLGADDYLVKPFESAELLARIRAVARRQ 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G AQ ++ G L ++ ++ V QG LT +EY ++ L LR L++ + +Y Sbjct: 120 GGQAQPVLSNGVLELDPVSREVRFQGQTQRLTAREYALLHALLLRPGAILSRSELEDRIY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +E E ++ I LRKKL+ + I+ V G G++ Sbjct: 180 GWNEEVESNAVEFLIHSLRKKLA-----PDVIKNVRGVGWL 215 >gi|27468018|ref|NP_764655.1| putative response regulator ArlR [Staphylococcus epidermidis ATCC 12228] gi|251810848|ref|ZP_04825321.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282876146|ref|ZP_06285013.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366617|ref|ZP_06613294.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81842840|sp|Q8CP82|ARLR_STAES RecName: Full=Response regulator ArlR gi|27315563|gb|AAO04697.1|AE016747_194 putative response regulator ArlR [Staphylococcus epidermidis ATCC 12228] gi|251805683|gb|EES58340.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295171|gb|EFA87698.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319386|gb|EFE59755.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329729376|gb|EGG65782.1| response regulator ArlR [Staphylococcus epidermidis VCU144] gi|329732898|gb|EGG69243.1| response regulator ArlR [Staphylococcus epidermidis VCU028] gi|329735341|gb|EGG71633.1| response regulator ArlR [Staphylococcus epidermidis VCU045] Length = 219 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 135/220 (61%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA IEL L EN+ V + + G+ G++ +D ILDL L +I G E+ Sbjct: 4 ILIVEDEQNLARFIELELTHENYTVDIENDGKVGLDKALSKPYDLYILDLMLPNINGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K +TP+ I++ S DKV GL GADDYI KPF+ EEL+ARIRA++RR + Sbjct: 64 CRQIR-QKTTTPIIIITAKSETYDKVAGLDYGADDYIVKPFDIEELLARIRAVLRR-QPD 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L + G + ++ DA V V GH++ LT EY ++ +L+ +N + +E L+H++ Sbjct: 122 KDVLDING-IIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGYN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV+I LR KL K+ IETV G GYV+R Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219 >gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229 >gi|163867915|ref|YP_001609119.1| two-component system regulatory protein [Bartonella tribocorum CIP 105476] gi|161017566|emb|CAK01124.1| two-component system regulatory protein [Bartonella tribocorum CIP 105476] Length = 222 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL++EDD+ L H + ++ + VY + GE+ L +DA+ILD+GL I G Sbjct: 1 MRILIVEDDRNLHHQLAEAVRQAGY-VYDSAFDGEEAYFLGSTESYDAVILDIGLPYIDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V+ R + PV +L+ DKV G+ +GADDY+ KPF+ EE++AR+RA++RR+ Sbjct: 60 VRVVEKWRQEGHTMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHLEEVMARLRALIRRT 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GHA S + G++ ++ V V G I LT E++++ L + +++ HLY Sbjct: 120 TGHATSALCCGNVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCDRVISRTELTEHLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + + ++VF+ +LRKKL G + IET+ G GY +R Sbjct: 180 DQDFDKDSNTVEVFVGRLRKKL-----GVDLIETIRGMGYRVR 217 >gi|160876979|ref|YP_001556295.1| two component transcriptional regulator [Shewanella baltica OS195] gi|160862501|gb|ABX51035.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|315269182|gb|ADT96035.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 14/228 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 M++LL+ED+ L +E LK YVTD+ + +E L K ++D +ILD+GL D Sbjct: 1 MKLLLVEDNPMLVTELEKQLKLAG---YVTDITDKALEADYLLKETQYDCVILDIGLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E+L R ISTPV +L+ S +KV G +GADDY+ KPF+ +EL+ARI+A++ Sbjct: 58 NGLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117 Query: 118 RSRGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R+ G + + G + ++ +TV+V LT E++++++ + L+K Sbjct: 118 RAHGRLNTSSKQLSYGGVILDEAEQTVKVADQLFELTAMEFRLLKIFLMSPKKLLSKTQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220 >gi|146297008|ref|YP_001180779.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410584|gb|ABP67588.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 223 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 131/222 (59%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V + G DGI + K D +ILD+ L G+ Sbjct: 1 MKILVIDDDVKICEVIKLYLEKEGFEVIIAHNGSDGITMFKHEMPDLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R KIS P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+ Sbjct: 61 EVCREIR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +G + ++V +L++NL V+++ I + KE +++ L+ N T+E L+H Sbjct: 119 QGEVNDEKVVVYPNLTINLTTYEVKLEDKIIEMPPKEIELLYFLASHPNKVFTREQLLDH 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV I ++R+K+ I+TVWG GY Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIEKDKYPWR-IKTVWGVGY 219 >gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] Length = 235 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 129/223 (57%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+KA+ I+ L+ ++ V GE+ +EL K EFD I+LDL L I G Sbjct: 10 RVLVVDDEKAIVKGIKFSLEQDDAEVSCAYDGEEALELAKSQEFDIILLDLMLPKIDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + P+ +++ DK+ GL+ GADDYI+KPFN E+ AR++AI+RR+ Sbjct: 70 VCRQIREFS-NVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIMRRNSF 128 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I+ GDL ++ D + + + ++LT KE+ ++ELL + N ++ LN Sbjct: 129 NLKKEQSDRVIIVGDLRLDRDGRRLFIGDREVNLTAKEFDVLELLVMNPNKVYGRDNLLN 188 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV I +LR+K+ + Y+ T WG GY Sbjct: 189 IVWGYEYPGDARTVDVHIRRLREKIEDDPSNPKYVHTKWGVGY 231 >gi|114330053|ref|YP_746275.1| two component heavy metal response transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114307067|gb|ABI58310.1| two component heavy metal response transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] Length = 227 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V + G DG L ++D IILD+ L D+ G+ Sbjct: 1 MKLLVVEDEIKTGEYVRQGLVESGFIVDLARTGLDGHHLALTEDYDLIILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ALR AK +TPV L+ S+ED+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 RIVQALREAKSATPVLFLTARDSVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGA 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A S + DL +++ + Q RI+LT KE+ ++ELL R+ L + + + ++ Sbjct: 121 APALSDQLQVADLVLDIPRRRARRQEVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ +A K I TV G GY+L Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDAFEPK-LIHTVRGMGYML 221 >gi|317489999|ref|ZP_07948491.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316910997|gb|EFV32614.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 226 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 137/232 (59%), Gaps = 11/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56 M++L++EDD+ L++++ L+ + Y D DG E FY +D ++LD+ L + Sbjct: 1 MKLLIVEDDRLLSNALARSLR----DAYAVDQAFDGEE-GLFYAAQDVYDLVVLDVMLPE 55 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 GF VL ALR + TPV +L+ S+ DK+RGL+SGADDY++KPF+++EL+ARI AI+ Sbjct: 56 RDGFSVLEALRAQGVDTPVLMLTARSATADKLRGLRSGADDYLAKPFDRDELLARIEAIL 115 Query: 117 RRSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR+ G IV +L+++ + + + L GK+Y ++E L + + ++KE Sbjct: 116 RRTTGRRDVGIVAFKELALHTRTQQAFIADEPLALKGKQYDILEYLVSHQGSLISKERLF 175 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++ + +++V++ LRK L+ G YI+T+ G GY+ E+ D Sbjct: 176 DKIWGFMSDTSSNVVEVYVSALRKALA-PTGYDRYIKTIRGAGYLFTEDDHD 226 >gi|296136300|ref|YP_003643542.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295796422|gb|ADG31212.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L + L+ V +V D G + + E++ ++LDLGL G Sbjct: 1 MRILLVEDDHMLGAATREALRDATHAVDWVLD-GASALSAAQGGEYELMLLDLGLPKRDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ALR + + P+ IL+ ++ED+VRGL GADDY+ KPF EL+ARIRA+ RR Sbjct: 60 LSVLQALRQSGSNLPILILTARDALEDRVRGLDLGADDYLVKPFESAELLARIRAVARRQ 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G AQ ++ G L ++ ++ V QG LT +EY ++ L LR L++ + +Y Sbjct: 120 GGQAQPVLSNGVLELDPVSREVRFQGQTQRLTAREYALLHALLLRPGAILSRSELEDRIY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +E E ++ I LRKKL+ + I+ V G G++ Sbjct: 180 GWNEEVESNAVEFLIHSLRKKLA-----PDVIKNVRGVGWL 215 >gi|307823691|ref|ZP_07653919.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307734985|gb|EFO05834.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 226 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ + ++ LK+E + V V G D I L +F AIILDLGL D+ G Sbjct: 1 MRVLLVEDDERIVDFVQRGLKAEGYAVEVARNGLDAIALGSAGKFQAIILDLGLPDLNGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR A + TP+ +L+ +++DKV GL+SGADDY++KPF EEL+ARI A++RR Sbjct: 61 QVCERLRDAGVGTPILMLTARDTVQDKVTGLRSGADDYMTKPFAFEELLARIEALMRRRS 120 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + + DL +N + V I LT KE+ ++E L++ L Sbjct: 121 GEIKLETKELQVADLLLNGETHEVRRGETLIELTPKEFALLECFMRMPGKVLSRTRILEQ 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P ++DV+I +LR+K+ + K ++TV G GY L Sbjct: 181 VWGYSADPLTNVVDVYIRQLRRKIDDDYELK-LLKTVRGFGYKL 223 >gi|299069010|emb|CBJ40258.1| response regulator in two-component regulatory system with CopS, regulation of copper resistance [Ralstonia solanacearum CMR15] Length = 228 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 134/228 (58%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG+ L ++D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATTGDYDLLVLDVMLPDLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +V+++LR A + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R ++RR S Sbjct: 61 QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + DL ++L + G RI LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 TPVALDRLQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D + + +IDV I +LR K+ + K I+TV G GYVL E+ +D Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFHPK-LIQTVRGMGYVL-EDPED 226 >gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 229 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229 >gi|319784369|ref|YP_004143845.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170257|gb|ADV13795.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 225 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ LA + L+ N+ V + GED + +ILDL L + G Sbjct: 1 MRLLLVEDNRELADWLGKTLRQANYVVDIVHDGEDVEHALAAGDHALVILDLALPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR PV +L+ +S++ +V+GL GADDY++KPF EEL ARIRA +RR+ Sbjct: 61 EVLRMLRTRGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRRAN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL + + + + G + LT +E+ ++E L ++ T++K +YD Sbjct: 121 DRTAPVVACGDLVFDTNTRLFSLAGEALALTPREHAVLEQLMVKAGRTVSKAALSAAIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I++++ ++RKKL G + I T+ G GY+LR++ Sbjct: 181 FETDADPSAIEIYVHRVRKKLD---GSRVQIATLRGLGYLLRQD 221 >gi|170695630|ref|ZP_02886773.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170139429|gb|EDT07614.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 219 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + +E L+ F V + D + G+ L + ++LDLGL + G Sbjct: 1 MRVLLVEDDDLIGCGVEAGLRQAGFTVDWARDGHKAGLAL-DTTSYALVVLDLGLPRVSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++L+ +R A PV +L+ ++ D+V GL++GADDY+ KPF+ EL AR RA++RR+ Sbjct: 60 MDLLKRIRDAGNDVPVLVLTARGTVVDRVSGLEAGADDYLGKPFDLTELTARCRALLRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + LI GDL+VN A+T ++ G R+ LT +E+ ++ L + ++ LY Sbjct: 120 QGRSVELICYGDLTVNPAAQTAQLAGTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E E I+V I LR+KL G I TV GYV+ Sbjct: 180 GWQQEIESNAIEVHISNLRRKL-----GAKLIRTVRNIGYVV 216 >gi|78188418|ref|YP_378756.1| two component transcriptional regulator [Chlorobium chlorochromatii CaD3] gi|78170617|gb|ABB27713.1| two component transcriptional regulator, winged helix family [Chlorobium chlorochromatii CaD3] Length = 225 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ +A ++ L+ E F V + G+ G+ + ++D +I+D + + G Sbjct: 1 MRLLIIEDEPGIAAFLKDGLEEEYFAVDLAFDGKSGLAMALSNDYDVLIVDWMIPALSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R A P+ L+ ++ED + GL++GA+DYI KPF EEL+ARIR + RSR Sbjct: 61 EVCRQVRKAGCLVPIIFLTARDTLEDVLFGLEAGANDYIKKPFAFEELLARIR-VQLRSR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G +++N V G + LT KE+ ++E L K+ T+ + H++D Sbjct: 120 TQGEESLSAGGVTLNPATHQVTYNGSELILTPKEFALLEYLLRNKDRVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +IDV+I LR+KL A G N+I+T+ G GY++RE Sbjct: 180 IHFDADTSVIDVYITFLRRKL-EAVGCNNFIQTIRGIGYIIRE 221 >gi|56540563|gb|AAV92735.1| PmrA [Escherichia coli] Length = 222 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELILGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 225 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD+ + ++ L E + V GE G++L + + D IILD L + G E Sbjct: 4 RILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLAREHRPDLIILDWMLPGMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + P+ +L+ +++D+V+GL +GADDY++KPF EEL+ARIRA++RR++ Sbjct: 64 VCQRLRTL-CNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLRRTQM 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ DL+++ + I LT KEY ++EL LT+EM + ++ Sbjct: 123 ERAPVLSFADLTLDTSTRQATRGNRTIPLTAKEYDLLELFLRHPRQVLTREMIFDRVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E ++DV+I LR+KL + G + TV G GYVLRE Sbjct: 183 DFGGESNVLDVYIRYLRQKL-ESDGEPRLLHTVRGVGYVLRETP 225 >gi|251791731|ref|YP_003006452.1| winged helix family two component transcriptional regulator [Dickeya zeae Ech1591] gi|247540352|gb|ACT08973.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 223 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+ + I+ L FNV G +G+ +DA++LDL L +I G Sbjct: 1 MRILVIEDDRLIGDGIKAGLIKLGFNVDWFTQGREGMNALTSAPYDAVLLDLSLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV +++ ++E +V+GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRQWRQHGYDVPVLVVTARDALEQRVQGLQQGADDYLCKPFELAEVAARLQALIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q ++ G ++++L ++ V G + L +E ++EL + LT+ LY Sbjct: 121 GQLQPVLRHGAVTLDLGSRQVTHNGVSLALKSRELALLELFLMNPTHILTRNQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE ++V I LR+KL N ++I TV G GY L Sbjct: 181 WDDEVSSNAVEVHIHHLRRKLGN-----HFIRTVHGVGYTL 216 >gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223 >gi|148259467|ref|YP_001233594.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402691|ref|YP_004282772.1| two-component response regulator [Acidiphilium multivorum AIU301] gi|146401148|gb|ABQ29675.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] gi|325049552|dbj|BAJ79890.1| two-component response regulator [Acidiphilium multivorum AIU301] Length = 227 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 MRIL++EDDK + + L+ V D G DG+ + FDAIILD L I G Sbjct: 1 MRILVVEDDKDVGGFVVKGLREAGHTVEHADNGRDGLFMAASENFDAIILDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L LR TPV LS + ++D+V+GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 LRLLETLRAQDNVTPVLFLSALGEVDDRVKGLKAGGDDYLTKPFAFAELLARVEAMARRG 120 Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +G + + GDL ++L ++ V+ G +I L +E++++E L +T+ M L + Sbjct: 121 KGEGPATRLNVGDLEMDLLSRGVKRAGQKIDLQPREFRLLEYLMRHAGQVVTRTMLLEGV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D +P+ +IDV I +LR+K+ + TV GY+LR Sbjct: 181 WDYHFDPQTNVIDVHISRLRQKIDKPF-DTPLLHTVRNAGYMLR 223 >gi|83311994|ref|YP_422258.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82946835|dbj|BAE51699.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 225 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD A + L+ V G DG+ L +DA+I+D L + G Sbjct: 1 MRILLIEDDSEAAAYMAKGLREAGHVVDHAATGTDGLFLATSERWDAMIIDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +++ALR A +TPV +LS + ++D+VRGL++G DDY+ KP+ EL+ARI A+ RR S Sbjct: 61 AIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEALSRRVS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + DL ++L A+TV G I L +E++++E L +T+ M L +++ Sbjct: 121 STQPETRLKVEDLEMDLLARTVTRGGQEIDLQPREFRLLEYLMRHGGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222 + +P+ +IDV I +LR+K+ K++ I TV G GY LR Sbjct: 181 EYHFDPQTNLIDVHISRLRQKVD-----KDFELPLIHTVRGAGYTLR 222 >gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15] gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15] Length = 247 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED+ +A + L E + V V G+ +DA++LD+ L PGF Sbjct: 17 VRVLVVEDEPKMAGLLRRGLAEEGYAVDVAADSPAGLSAASGGGYDAVVLDVMLPGFPGF 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R LR I PV +L+ +++D+VRGL SGADDY++KPF+ EEL+AR+RA+ RR Sbjct: 77 ELCRRLRERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRRGP 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V G+L ++ + ++LT KE+ ++E + LT+E+ L + +D Sbjct: 137 LVSARGLVAGNLRLDSEGMRCWRGEAEVNLTAKEHALLEFFMEQPGRVLTREVLLENCWD 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E ++DV + LR+K+ G ++ IETV G GY LR +A Sbjct: 197 LAFEANSNVVDVHVRALREKIDRRFGVRS-IETVRGVGYRLRADA 240 >gi|104780165|ref|YP_606663.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila L48] gi|95109152|emb|CAK13849.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila L48] Length = 223 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + F V + G DG+ L ++ I+LD+ L + G+ Sbjct: 1 MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ +ED++ GL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSA 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H I DL ++L A+ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 IHEPLQIQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPFDNK-LLHTIRGMGYVL 219 >gi|312797149|ref|YP_004030071.1| transcriptional regulatory protein qseB [Burkholderia rhizoxinica HKI 454] gi|312168924|emb|CBW75927.1| Transcriptional regulatory protein qseB [Burkholderia rhizoxinica HKI 454] Length = 333 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A + L+++ + V G I +D ++LDLGL G Sbjct: 115 MRVLLVEDDSMIAEGVRKALRADGWAVDWVQDGAAAILAADGEPYDLMLLDLGLPQRDGL 174 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R K PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA+VRR Sbjct: 175 DVLKTVRAKKHVFPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALVRRQA 234 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+++I L+++ A+ V ++G + L+ +EY ++E L R L+K +Y Sbjct: 235 GRAETVIRHRGLTLDPAAREVTLEGVPVALSAREYGLLEALLARPGAVLSKSQLEEKIYG 294 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL G I TV G GY++ Sbjct: 295 WGEEIGSNTVEVYIHSLRKKL-----GAELIRTVRGLGYMM 330 >gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family [Streptomyces clavuligerus ATCC 27064] gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family protein [Streptomyces clavuligerus ATCC 27064] gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 126/226 (55%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + L E F V T G +EL + E+DAI+LD+ L + G Sbjct: 1 MRILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEYDAIVLDVMLPGMNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR +I TPV +L+ D+ GL +GADDY++KPF+ LVAR+RA+VRR R Sbjct: 61 RVCARLRENRIWTPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRRGR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL V+ + E G + LT +E+ ++ L+ ++ + K L+H++ Sbjct: 121 RERPPVIEIGDLRVDPATRRCERSGTPVPLTAREFGVLWYLAAQRGEVVAKTEILDHVW- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 G E +V +++V++ LR+K+ G+ I TV G GY L + Sbjct: 180 GDFEGDVNVVEVYVSALRRKIDTPF-GRRTIHTVRGAGYRLEDTGS 224 >gi|154506657|ref|ZP_02043114.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149] gi|153793325|gb|EDN75748.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD ++ ++ L++EN+ V GE+ E + + ++LDL + I G Sbjct: 1 MKLLLVEDDIEISQMLKSYLEAENYEVICAVDGEEACEKFEKESYSLVLLDLMIPKISGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R + P+ I+S + DK GL GADDYI+KPF+ E++ARI+A +RRS Sbjct: 61 EVMQHIRTHS-TVPIIIVSAKDTDADKTLGLGLGADDYITKPFSVTEVLARIKANIRRST 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ Q +++ GDL++NL TVE G +I LT KE+++++LL TKE + Sbjct: 120 QYSKPEEQEVLMMGDLTINLTNYTVEKNGTKIDLTAKEFEILKLLVQNPQKVYTKEQMYS 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + ++V I +LR K+ YI TVWG GY L Sbjct: 180 LIWNDAYLGDENAVNVHISRLRNKIEEHPRSPKYIITVWGIGYKL 224 >gi|121607345|ref|YP_995152.1| two component heavy metal response transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121551985|gb|ABM56134.1| two component heavy metal response transcriptional regulator, winged helix family [Verminephrobacter eiseniae EF01-2] Length = 231 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 130/225 (57%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ +A + L + V + G DG L ++++D I+LD L + GF Sbjct: 1 MKILIVEDEHKMAEYLRKGLSEQGCTVDLAANGIDGQHLAIWHDYDVIVLDAMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR+LR+ K TPV +L+ +ED+++GL GADDY+ KPF+ EL+AR++A+ RR R Sbjct: 61 SVLRSLRILK-QTPVIMLTARDRVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL ++L ++ RI LT KE+ ++ +++ R+ L+K ++D Sbjct: 120 AQEPAQLRIGDLQIDLLSRKALRNNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++V I +LR K+ +A + + T+ G GYVL A Sbjct: 180 MNFDSNTNVVEVAIKRLRAKI-DAPFSQKLLHTIRGMGYVLEPRA 223 >gi|186683314|ref|YP_001866510.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465766|gb|ACC81567.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 624 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 127/233 (54%), Gaps = 5/233 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ L +N+ V + GE G EL +D I+LD+ L + G Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR + +L+ + DKV GL +GADDY+ KPF+ +EL ARIRA++RR Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G S+ LD T EV I +LT KE+ +++L ++ ++ L Sbjct: 121 TALPPVLEWG--SLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQL 178 Query: 179 YDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + +D PE I I LR+KL A ++IETV+G GY L+ + +++C Sbjct: 179 WSAEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKALSHEQSC 231 >gi|319408243|emb|CBI81896.1| two-component system regulatory protein [Bartonella schoenbuchensis R1] Length = 222 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 9/221 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L + LK+ + GE+ L +DA+ILD+GL + G Sbjct: 1 MRILIVEDDRDLNDQLAEALKNAGYVFDCVFDGEEAYFLGSTEPYDAVILDIGLPRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R S PV +L+ DKV G+ +GADDY+ KPF+ EE++AR+RA++RR+ Sbjct: 61 RVVEKWRQEGYSMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHIEEVIARLRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GHA + + G SV LD KT V V G I LT E++++ L + +++ + HL Sbjct: 121 GHATNSLSCG--SVLLDTKTSRVFVDGQLIKLTSHEFRLLSYLMHHCDQIVSRTELIEHL 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 YD + + I+VF+ +LRKKL G + IETV G GY Sbjct: 179 YDQDFDKDSNTIEVFVGRLRKKL-----GVDLIETVRGMGY 214 >gi|311104327|ref|YP_003977180.1| transcriptional activator protein IrlR 2 [Achromobacter xylosoxidans A8] gi|310759016|gb|ADP14465.1| transcriptional activator protein IrlR 2 [Achromobacter xylosoxidans A8] Length = 230 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 130/230 (56%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ A + L F V + G DG L +D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++RALR A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q I DL ++L + G RI+LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 D + + +IDV I +LR K+ +A K I TV G GY L +A D+ Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDAFNPK-LIHTVRGMGYTL--DAPDDA 227 >gi|281355652|ref|ZP_06242146.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] gi|281318532|gb|EFB02552.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] Length = 222 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD A I + F G DG+ K FDA ++D+ L + GF Sbjct: 1 MRILLIEDDAKTAEIILKGFQQAGFETCHAADGLDGLFKAKSALFDAAVIDVMLPKLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR A + P+ +LS S+E K+ GL+ G DDY++KPF+ EL+AR+ A +RR+ Sbjct: 61 TVIEELRAAGLKLPIIVLSAKDSVESKITGLEKGGDDYLAKPFSMAELIARVHAQLRRAS 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A++ ++T DL+++L ++ V G RI L EYQ++E L K ++K + H++ Sbjct: 121 CAAETTVLTVEDLTLDLISRKVVRGGERIELQPLEYQLLEYLMRNKGRVVSKNTIMEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I++ +C+LR+K+ + + I TV G GYVL Sbjct: 181 EYHFDTRTNIVESRVCRLREKI-DKPFARKLIRTVRGFGYVL 221 >gi|294139273|ref|YP_003555251.1| DNA-binding response regulator [Shewanella violacea DSS12] gi|293325742|dbj|BAJ00473.1| DNA-binding response regulator [Shewanella violacea DSS12] Length = 224 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 12/226 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L +E LK + VTD + L K ++D +ILD+GL D G Sbjct: 1 MKLLLVEDNALLVEELEKQLKQAGYVTDVTDKAAEADYLLKETDYDCVILDIGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R + TPV +L+ S +KV G +GADDY+ KPF+ +EL+ARI A+++R+ Sbjct: 61 ELLERWRNRGVMTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQRAH 120 Query: 121 GHAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A + T +LS ++ + ++V V+ LT E++++++ + L+K Sbjct: 121 GKAS--LPTKELSFSGVVLDENQQSVTVEDKNFELTAMEFKLLKIFLMSPKKLLSKSQLT 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 179 EKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIF 219 >gi|295688435|ref|YP_003592128.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430338|gb|ADG09510.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 225 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L ++L L + V GE+ L + +DA+ILDLGL + G Sbjct: 1 MRILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQFLGETEPYDAVILDLGLPKVDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R I+TPV IL+ + DKV G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 SVLERWRRGNIATPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + G L ++ A V G + LT EY+++ + + + + + + HLYD Sbjct: 121 GHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VFI +LRKKL G IETV G GY L Sbjct: 181 QDFDRDSNTIEVFIGRLRKKL-----GAERIETVRGLGYRL 216 >gi|24115318|ref|NP_709828.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 2a str. 301] gi|30064682|ref|NP_838853.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 2a str. 2457T] gi|110807888|ref|YP_691408.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 5 str. 8401] gi|300920895|ref|ZP_07137289.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|24054618|gb|AAN45535.1| transcriptional regulatory protein [Shigella flexneri 2a str. 301] gi|30042941|gb|AAP18664.1| transcriptional regulatory protein [Shigella flexneri 2a str. 2457T] gi|110617436|gb|ABF06103.1| Transcriptional Regulatory protein basR/pmrA [Shigella flexneri 5 str. 8401] gi|281603423|gb|ADA76407.1| Transcriptional regulatory protein [Shigella flexneri 2002017] gi|300412123|gb|EFJ95433.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|313648696|gb|EFS13136.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri 2a str. 2457T] gi|332752050|gb|EGJ82443.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri 4343-70] gi|332752221|gb|EGJ82613.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri K-671] gi|332753248|gb|EGJ83629.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri 2747-71] gi|332764810|gb|EGJ95039.1| transcriptional regulatory protein BasR [Shigella flexneri 2930-71] gi|332999212|gb|EGK18799.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri K-218] gi|333010364|gb|EGK29797.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri VA-6] gi|333011063|gb|EGK30477.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri K-272] gi|333012744|gb|EGK32124.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri K-227] gi|333014176|gb|EGK33532.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri K-304] Length = 222 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 19/234 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVTTARMAEQSLEDGHYSLVVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 N +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 131/222 (59%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ L I+ L+ E F V D G + ++L + +FD ++LD+ + ++ GF+ Sbjct: 5 RILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIMMPEVSGFD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R KI PV L+ + DK+ GL+ G DDYI+KPF+ EL ARIRA++RR++ Sbjct: 65 VLRRIR-EKIQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRRAKP 123 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A +++ G + ++L+ KT + G + LT E++++ +L T +++ L ++ Sbjct: 124 SEAANTILEYGGIRLDLNEKTASLNGRPLFLTPTEFRILAILMAHPGTIVSRLRILEEVF 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +D I LRKKL + YI+TV+G GY L Sbjct: 184 GGYYEGYERNLDTHISNLRKKLGDNPLNPRYIKTVYGTGYKL 225 >gi|227328970|ref|ZP_03832994.1| DNA-binding heavy metal response regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 230 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 134/223 (60%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + I L + V V G DG+ L Y++DA+ILD+ L G+ Sbjct: 1 MRLLLVEDEEKTSSYIYRALSELGYTVDVAADGIDGLHLAVQYDYDAVILDVMLPGKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL LR+ K TPV +LS S++++V+GL+ GADDY+SKPF+ ELVARI+A++RR Sbjct: 61 AVLEGLRLHK-QTPVLMLSARGSVDERVKGLRHGADDYLSKPFSLIELVARIQALLRRRL 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S G + + D+ ++L A+ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 SDGVDVTQLHIDDMHLDLLARRVTRAGQRLDLTAKEFALLSLLARHQGEILSKMMIAEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +++V + +LR K+ +A + TV G GYVL Sbjct: 180 WDMNFDSDANVVEVAVKRLRAKV-DAPYTVKLLHTVRGMGYVL 221 >gi|254423774|ref|ZP_05037492.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196191263|gb|EDX86227.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 636 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL++DD ALA + L + N+ V +V D GE G +++D ++LD L + G Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVAD-GETGWAYASTFDYDLVVLDWMLPQLSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR P+ +L+ + +K+ GL++GADDY+ KPF+ +EL+ARIR ++RR+ Sbjct: 60 VHLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRT 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ G+L ++ + V G + LT KEY ++EL + + + L L+ Sbjct: 120 PHETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ P + + +LR+KLS A + IETV G GY L+ Sbjct: 180 SSQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLK 222 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 2/113 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DD + +L NF + + L D ++ D+ + I GFE Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 + R LR P+ LS + + GADDYI+KP + + R+ Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATRL 622 >gi|115526887|ref|YP_783798.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520834|gb|ABJ08818.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 221 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ +A + L++ + V V GE+ ++ AIILDLGL + G Sbjct: 1 MRVLVVEDDRRIAADLTRGLEAAGYVVEVVGDGEEAWFRGDTEDYAAIILDLGLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R PV IL+ S ++V G+ +GADDY+ KPF EEL+AR+R+IVRRS Sbjct: 61 TVLKRWRSNDRRIPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A SLI G++S++ V+ +G ++L+ EY+++ L+L + +++ ++Y Sbjct: 121 GQASSLIHVGEISIDERQMRVDRRGVPVNLSPLEYRLVSYLALHRGRVVSQHELSENIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + I+V I ++RKKL G IET G GY++ Sbjct: 181 NEDAHDSNAIEVLIGRVRKKL-----GSELIETRRGFGYIV 216 >gi|228952982|ref|ZP_04115044.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806703|gb|EEM53260.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 224 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+++LA +EL LK E + V + G G+ +D I+LDL L + G EV Sbjct: 4 ILIIEDEESLADFLELELKYEGYKVDIQLDGRKGLSEALEKNYDLILLDLMLPGLNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R LR K +TP+ +L+ SI D+V GL SGADDY+ KPF EEL+AR+R I RR Sbjct: 64 CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEHI 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + DL + ++++T+ I LT KE++++ + N LT+++ L+ ++ Sbjct: 123 ENKQVSFLTFKDLQLQIESRTITKGDEEIELTNKEFELLLMFMKNINRVLTRDVLLDQVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I+DV++ LR KL ++ + YI+TV G GY+++ Sbjct: 183 GYDAIVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224 >gi|317402962|gb|EFV83502.1| winged helix family Two component transcriptional regulator [Achromobacter xylosoxidans C54] Length = 219 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + S+ L++E++ V G + +D ++LDLGL G Sbjct: 1 MRILLVEDDTMIGESVLDCLRAEHYAVDWVKDGHAAELALRTDPYDLVLLDLGLPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR K TPV I + ++ D++ GL +GADDYI KP++ +EL+AR+RA++RRS Sbjct: 61 TLLRELRARKDRTPVLIATARDAVSDRIAGLDAGADDYIVKPYDVDELLARMRALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ + ++++ + V G + LT +E+ ++E L R ++ LY Sbjct: 121 GRAEPVFEHDGITIDPQSHAATVDGTPVPLTAREWAVLEPLIARPGMIFSRAQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D ++V+I LRKKL G+N I+ V G GYV+ Sbjct: 181 WKDSVSSNAVEVYIHGLRKKL-----GQNLIQNVRGVGYVI 216 >gi|152969364|ref|YP_001334473.1| DNA-binding transcriptional regulator BasR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893828|ref|YP_002918562.1| DNA-binding transcriptional regulator BasR [Klebsiella pneumoniae NTUH-K2044] gi|330014488|ref|ZP_08307928.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3] gi|150954213|gb|ABR76243.1| response regulator in two-component regulatory system with BasS (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546144|dbj|BAH62495.1| OmpR family response regulator in two-component regulatory system with BasS [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328533015|gb|EGF59789.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3] Length = 223 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 129/229 (56%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+IL+IEDD L + L ++SE + V+ E + L + + I+LDLGL D G Sbjct: 1 MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNH-YSLIVLDLGLPDEDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 L +R K++ PV IL+ ++ED++ GL +GADDY+ KPF EEL ARIRA++RR Sbjct: 60 LHFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRH 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I G+L +N+ + V + + LT KEY ++ L ++ + + +E+ N +Y Sbjct: 120 NNQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +EP ++V I LR+K+ GK+ I TV G GY+L N E Sbjct: 180 SWDNEPATNTLEVHIHNLREKI-----GKSRIRTVRGFGYMLANNIDTE 223 >gi|126172825|ref|YP_001048974.1| two component transcriptional regulator [Shewanella baltica OS155] gi|153002255|ref|YP_001367936.1| two component transcriptional regulator [Shewanella baltica OS185] gi|217974842|ref|YP_002359593.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304410933|ref|ZP_07392550.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307304896|ref|ZP_07584646.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125996030|gb|ABN60105.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151366873|gb|ABS09873.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|217499977|gb|ACK48170.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304350830|gb|EFM15231.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306912298|gb|EFN42722.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] Length = 224 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 14/228 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 M++LL+ED+ L +E LK YVTD+ + +E L K ++D +ILD+GL D Sbjct: 1 MKLLLVEDNPMLVTELEKQLKLAG---YVTDITDKALEADYLIKETQYDCVILDIGLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E+L R ISTPV +L+ S +KV G +GADDY+ KPF+ +EL+ARI+A++ Sbjct: 58 NGLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117 Query: 118 RSRGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R+ G + + G + ++ +TV+V LT E++++++ + L+K Sbjct: 118 RAHGRLNTSSKQLSYGGVILDEAEQTVKVADQLFELTAMEFRLLKIFLMSPKKLLSKTQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220 >gi|237799166|ref|ZP_04587627.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022021|gb|EGI02078.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 220 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 128/228 (56%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+LL+EDD+A+ I + L +E Y D EDG+ + L L +P Sbjct: 1 MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF++LR LR +++ PV IL+ D++ GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G AQ L+ +S++ ++ V G + +T EYQ++ L +R +T+E + Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFHGCEVPMTPMEYQLLHQLMIRPGKVVTRERLSDT 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LY +++ E ++V I LRKKLS I TV G GY+L A Sbjct: 178 LYGWQEKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLELKA 220 >gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L+ E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 66 EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229 >gi|118445101|ref|YP_879164.1| two-component response regulator [Clostridium novyi NT] gi|118135557|gb|ABK62601.1| two-component response regulator [Clostridium novyi NT] Length = 231 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 134/226 (59%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+++++ I+L+L+ +NF V GEDG++ +ILD+ L I GF+ Sbjct: 6 KVLVIEDEQSISKFIKLVLQKQNFEVIQAFSGEDGLKKVTTENPIVVILDIMLPGIDGFK 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V LR S + +L+ + DK++GL++GADDY+ KPFN EL ARI +++RR Sbjct: 66 VCEILRKNYPSIGIIMLTALGQDIDKIKGLENGADDYMIKPFNPLELAARITSLIRRMNF 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + +V+G+ VNL++K ++LT KE+ ++++ T+L+++ L+ Sbjct: 126 SNNTSSDTLVSGEFKVNLNSKIAYKNDKELNLTPKEFILLKIFMENIGTSLSRDKLLDLA 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + KI+DV I +LR KL + Y++TVWG GY+ +E+ Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGVGYIWKED 231 >gi|15597853|ref|NP_251347.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107102178|ref|ZP_01366096.1| hypothetical protein PaerPA_01003228 [Pseudomonas aeruginosa PACS2] gi|116050644|ref|YP_790537.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218891181|ref|YP_002440047.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254235639|ref|ZP_04928962.1| hypothetical protein PACG_01571 [Pseudomonas aeruginosa C3719] gi|254241086|ref|ZP_04934408.1| hypothetical protein PA2G_01771 [Pseudomonas aeruginosa 2192] gi|296388882|ref|ZP_06878357.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313107697|ref|ZP_07793879.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9948727|gb|AAG06045.1|AE004694_8 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115585865|gb|ABJ11880.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126167570|gb|EAZ53081.1| hypothetical protein PACG_01571 [Pseudomonas aeruginosa C3719] gi|126194464|gb|EAZ58527.1| hypothetical protein PA2G_01771 [Pseudomonas aeruginosa 2192] gi|218771406|emb|CAW27173.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310880381|gb|EFQ38975.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 223 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 122/220 (55%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D +D IILDLGL PG Sbjct: 1 MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL RI+A++RR+ Sbjct: 61 EILQEWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A QS + L ++ + V + G + LT E++++ L L+K HLY Sbjct: 121 GLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG E + +I+V + LR+KL G+ IET G+GY Sbjct: 181 DGETERDSNVIEVHVNHLRRKL-----GREVIETRRGQGY 215 >gi|320322852|gb|EFW78943.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 225 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L + IILD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLRRGLTEQGYAVDVERDGIEGLHLALENDHAIIILDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ ++D++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH I DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219 >gi|161520888|ref|YP_001584315.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160344938|gb|ABX18023.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] Length = 222 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ LA S+ L + F V GE + + ++ +ILDLGL + G EV Sbjct: 1 MLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGLEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + PV IL+ S+ED+V+GL GADDY++KPF EL AR RA++RRS GH Sbjct: 61 LRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSLGH 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 S + G L+ + ++ + G + LT +E ++E+L LR + KE ++ Sbjct: 121 EHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFGLD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I++++ +LRKKL N+ I T+ G GY+L A Sbjct: 181 ESVNADAIEIYVYRLRKKLENSGVA---IVTLRGLGYLLEAKA 220 >gi|299137820|ref|ZP_07031001.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298600461|gb|EFI56618.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 226 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ +A + L+ ++ + + + G +G+++ +EF++IILD L + GF Sbjct: 1 MRILVVEDDRKMALVLRDALEKQSHRIVLANTGLEGLDIASSHEFESIILDAMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R+LR AK+STP+ +L+ + D VRGL SG DDY++KPF EL AR+RA+ RR+ Sbjct: 61 TVARSLRDAKVSTPILMLTARDATSDVVRGLDSGVDDYLTKPFAFAELFARLRALGRRTL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A DL ++ G I LT E+ ++E + +T L +E +N ++ Sbjct: 121 ATASLSYQLEDLCLDPHTHIASRSGRAIMLTRTEFLLLEFMMRNPHTVLRREAIINAVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +D F+ +LR K+ G K I TV G GY L Sbjct: 181 YEHTVENNTLDAFMKQLRSKVDEGHGNK-LIHTVRGFGYKL 220 >gi|260221887|emb|CBA30899.1| Transcriptional regulatory protein tctD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 224 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L+S V +V E L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRALRSAGAAVDHVASGTEADAALMTNTEFDLLILDLGLPKMHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR S PV IL+ S++++V+GL GADDY++KPF+ +EL AR+RA++RR Sbjct: 61 LEVLKKLRARGSSLPVLILTAADSVDERVKGLDYGADDYMAKPFSLQELEARVRALIRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S I G L+ + + + G + L+ +E ++E+L R ++K+ + L Sbjct: 121 MGATSSSIKHGPLTYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E I+V+I +LRKK+ G I TV G GY L Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPIRIATVRGLGYCL 219 >gi|317493853|ref|ZP_07952270.1| heavy metal response regulator [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918180|gb|EFV39522.1| heavy metal response regulator [Enterobacteriaceae bacterium 9_2_54FAA] Length = 226 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 134/223 (60%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + + L F V V+ G +G+ +++DAIILD+ L + G+ Sbjct: 1 MRLLLVEDEEKTSTYLNRALSESGFTVDVSADGAEGLHYALEFDYDAIILDVMLPGMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL +R AK TPV +LS S++++V+GL+ GADDY+ KPF+ ELVARI+A+VRR Sbjct: 61 RVLEGVRAAK-QTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRA 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + + DL ++L A+ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 TDGADITQLQIHDLHLDLLARRVFRAGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +++V I +LR K+ +A + TV G GYVL Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKV-DAPFDVKLLHTVRGMGYVL 221 >gi|319760961|ref|YP_004124898.1| heavy metal response regulator [Alicycliphilus denitrificans BC] gi|317115522|gb|ADU98010.1| heavy metal response regulator [Alicycliphilus denitrificans BC] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 129/227 (56%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ LA + L E + + V G DG+ + +D I+LD L I GF Sbjct: 1 MKLLIVEDEAKLADYLRKGLSEEGYVIDVAVNGIDGLHMASDGHYDLIVLDTMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ALR K TPV +L+ IED+VRGL++GADDY+ KPF ELVARI ++RR+ Sbjct: 61 GLLAALRQNK-QTPVIMLTARHRIEDRVRGLKTGADDYLVKPFAFSELVARIEVLLRRAA 119 Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + ++ GDL V+L + G RI L+ KE+Q++ LL RK L++ Sbjct: 120 GTAPAPDALVLCLGDLQVDLARRRATRAGQRIDLSAKEFQLLTLLLRRKGEVLSRTEIAE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D + +IDV + +LR KL + + + TV G GYVL + Sbjct: 180 QVWDVNFDHGTNVIDVAVRRLRSKL-DLPFERPLLHTVRGMGYVLED 225 >gi|190574616|ref|YP_001972461.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012538|emb|CAQ46166.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 232 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L + V + G DG+ L E+ +ILD+ L + G+ Sbjct: 1 MKLLIVEDEPKTGNYLRQGLIEAGYVVDLACNGVDGLHLAGSGEYQLVILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR A PV L+ SSI D+V+GL+ GADDY++KPF EL+AR+R ++RR + Sbjct: 61 NVLSRLREAGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ IV DL V+ + VE G RI L+ KEY ++ELL+ R+ L + + + ++ Sbjct: 121 AQPQAERIVIADLVVDTLRRRVERGGQRITLSQKEYTLLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I TV G GYVL Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFDAK-LIVTVRGMGYVL 221 >gi|111025331|ref|YP_707751.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110824310|gb|ABG99593.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 230 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA + L+ E F V GEDG+ FD I+LD+ L + G+ Sbjct: 1 MRVLVVEDEARLASVVRRGLELEGFVVVTAATGEDGLWRATEDTFDVIVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++RALR +I TP+ +L+ D+ GADDY+ KPF+ LVAR+RA+VRR Sbjct: 61 EIVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ GDLS++ + V + LT +E+ ++E L +T LTK + L +++D Sbjct: 121 PARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRHPDTALTKGVILRNVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I++V+I LR+K+ +A G + I+TV G GY L Sbjct: 181 AHYDGDENIVEVYIGYLRRKI-DAPFGAHTIDTVRGVGYRL 220 >gi|307264989|ref|ZP_07546550.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919974|gb|EFN50187.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 229 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 129/223 (57%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A +++ L + + + GE + L + F I+LD+ L DI GFE Sbjct: 3 KILVIEDDVNIAKFVKINL-DKYYETEIVHEGERALYLLERERFSVIVLDIMLPDISGFE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L+ +R K++TPV IL+ S DK+ GL+ GADDYI+KPFN ELVAR+RA++RR Sbjct: 62 LLKKIRAMKVNTPVVILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRRVYE 121 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +L+ ++ ++L V+G + LT +E+Q++++L + + +E + Sbjct: 122 FNASSKSINLLEYDEIKLDLIQNKAFVRGKEVFLTPREFQILKMLMTNRKKVVKREELIA 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV I +LR+K+ YI T WG GY Sbjct: 182 SIWGDSFIEDTKTLDVHIRRLREKIEVNPDQPKYIHTQWGVGY 224 >gi|300022658|ref|YP_003755269.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299524479|gb|ADJ22948.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 262 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A ++ LK + GE G+ L +D +I+D L + G Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+++LR TPV ILS + ++D+V+GL++G DDY++KP+ EL+AR+ A+ RR+ Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ I GDL ++ + V G I L +EY+++E L +T+ M L H++ Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P+ +IDV + +LR K+ K + TV G GY +R+ Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNF-DKPLLHTVRGAGYTIRD 259 >gi|222149445|ref|YP_002550402.1| two component response regulator [Agrobacterium vitis S4] gi|221736428|gb|ACM37391.1| two component response regulator [Agrobacterium vitis S4] Length = 221 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA + L N+ V GE+ + ++ A+ILDL L I G Sbjct: 1 MRLLIVEDNHELADWLAKALTQANYTVDAAHDGEEAEDFLNLADYAAVILDLSLPKIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R + PV IL+ +S++ +V GL SGADDY++KPF EL AR+RA++RR Sbjct: 61 TLLKRIRRSGRKVPVIILTANASLDGRVAGLDSGADDYLAKPFEMAELEARLRALIRRGH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A I DL +N + ++G + LT +E+ ++E L L+ +T+TK ++ Sbjct: 121 DLASPEIAVADLVLNSATRQFSLKGEVLSLTPREHSVLEYLILKAGSTVTKAALSQSVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + I++++ ++RKKL GG I T+ G GY+LR Sbjct: 181 FDAETDPSAIEIYVHRVRKKLE---GGAVQIATLRGLGYMLR 219 >gi|220933353|ref|YP_002512252.1| two component transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] gi|219994663|gb|ACL71265.1| two component transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] Length = 226 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+++IED+ L + L++E + V + GEDG+ Y D ++DLGL +PG Sbjct: 1 MRVVVIEDEAPLREQLRTRLEAEGWMVDTSADGEDGLFQLTEYPADVAVVDLGLPRLPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR PV IL+ S ++KV+GL++GADDY++KPF+ EELVARIRA+ RR+ Sbjct: 61 EVIRRLRAGGGKVPVLILTARSQWQEKVQGLEAGADDYLAKPFHMEELVARIRALARRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + G L ++ A+ V G + LT EY+++E L+ ++K+ ++LY Sbjct: 121 GSADGRLALGPLVLDTAAQAVSRNGEPVSLTTFEYRVLEYLARHAGQVVSKQTLTDYLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ + +++V I +LRKKL + G IET+ GRGY L Sbjct: 181 HDDDRDSNVLEVLIGRLRKKL-DPDGSLTPIETLRGRGYRL 220 >gi|300024327|ref|YP_003756938.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299526148|gb|ADJ24617.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 229 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 121/219 (55%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILLIEDD +A + L F V D G DG + + A ILDLGL + G Sbjct: 13 IRILLIEDDDEIADRLVAGLARAGFTVERADNGADGYAMGLDDTYAAAILDLGLPQMQGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R + PV ILS + +KV GL +GADDYI+KPF+ E+ AR++A++RR+ Sbjct: 73 DVLKRWRASDRKLPVLILSARGTWAEKVDGLNAGADDYITKPFHIPEVAARLKALIRRAS 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G +S++ + V G I LT +E +M+ R +++ ++HLY Sbjct: 133 GIASPVLSHGGISLDTTSNRVCQNGESIELTARELKMLTYFMHRIGRIVSQAELVDHLYA 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D E I+V+I +LR+KL G + I TV G GY Sbjct: 193 LEDSRESNTIEVYISRLRRKL-----GADVITTVRGLGY 226 >gi|152981423|ref|YP_001354086.1| two-components system response regulator [Janthinobacterium sp. Marseille] gi|151281500|gb|ABR89910.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 221 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR LL+EDD + + L+ F V + G D EFD ILDLGL + G Sbjct: 1 MRALLVEDDPDVGQHVLQALQEAGFVVDWSRDGNDAWFKGDVEEFDVAILDLGLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R AK + PV ILS S +KV G++SGADDY++KPF EL+AR RA+VRR+ Sbjct: 61 SVLRRWRAAKRTFPVLILSARSDWSEKVEGIESGADDYLAKPFEVAELIARTRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA +++ G L+++ T V + L+ E++ L+ + ++ HLY Sbjct: 121 GHADPVLICGALTLDTRRMTATVDKQPVRLSPLEFRFFSYLAHQAGRPVSAGELAEHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+ + ++R+K G + IET G GY+L Sbjct: 181 DSEGVDTNAIEALVLRMRRKF-----GADLIETRRGFGYML 216 >gi|317402892|gb|EFV83434.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 229 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 12/238 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL+ EDD LA + +S N Y D DG+ FD +ILDLGL + Sbjct: 1 MRILIAEDDSILADGLS---RSLRHNGYAVDAVRDGLAADSALAAQAFDLLILDLGLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR LR + PV IL+ SIE +V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 AGLEVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +L+ G L + + V + L+ +E ++E+L R ++K ++H Sbjct: 118 RGAGGGATLLKHGRLVFDQTGRVATVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 L + +E I+V++ +LRKKL +G K I TV G GY L +D+ YL + Sbjct: 178 LCEWGEEVSTNAIEVYVHRLRKKL-EPSGVK--IVTVRGLGYCLE---RDQGAAYLAS 229 >gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 226 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ L+ E F V V G D +E+ D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYNLRKEGFEVAVASTGPDALEIFDRNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A+ + PV +L+ S DKV GL+ GADDY++KPF+ EL+AR+RA++RR RG Sbjct: 63 VCRELR-ARSNVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVLRR-RG 120 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+ S++ G + ++++ V V G + L KE++++E+L LT+ ++ Sbjct: 121 DAEEPPPSVLEAGPVRMDVERHVVTVDGEAVQLPLKEFELLEVLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV I +LR K+ YI TV G GY Sbjct: 181 VWGADYVGDTKTLDVHIKRLRAKIEPVPSSPRYIVTVRGLGY 222 >gi|228959427|ref|ZP_04121117.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800261|gb|EEM47188.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 236 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233 >gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation [Bacillus pseudofirmus OF4] Length = 241 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++++A ++ L+ F V V GE+G+ L K FD +ILDL L I G + Sbjct: 4 RILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEPFDLLILDLMLPKIDGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR K TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR+RAI+RRS Sbjct: 64 ICKQLRQNKKMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRSAQ 123 Query: 122 HAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +++ +I GD+ + + V V + LT KE+++ L+ K LT Sbjct: 124 LSETSEAANNEENGRVIKIGDVEIFPENYEVLVHKKALELTPKEFELFLYLANHKGRVLT 183 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ LN +++ + +I+DV I LR+K+ YI+TV G GY L E Sbjct: 184 RDQLLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKLEE 236 >gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 227 Score = 139 bits (349), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/225 (39%), Positives = 132/225 (58%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59 IL++ED+K +A IEL L++E Y T++ DGI L +F E + +++DL L + G Sbjct: 9 ILIVEDEKDIARFIELELQAEG---YRTEVAYDGITGLSRFRETNPNLVVMDLMLPVMDG 65 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R + P+ IL+ +EDKV GL +GADDY+ KPF+ EEL+ARIRA +RR Sbjct: 66 LEVARRIRKTS-NVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRV 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL +NL+ + V G RI + KE++++ELL+ ++ ++ Sbjct: 125 TPAITGEIRVSDLIINLEGREVYRSGRRIEFSNKEFELLELLAKSPGKVFSRFEIEEKVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G + ++DV+I LRKKL AG + I TV G GYVLRE+ Sbjct: 185 PGY-QGGSNVVDVYIGYLRKKL-EGAGERRLIHTVRGVGYVLRED 227 >gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus thermophilus ND03] Length = 229 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ LA + L L+ E ++V D G +G+EL +FD I+LDL L ++ GFE Sbjct: 4 RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K T + +++ SI D V GL GADDYI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQQEK-DTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ DL +++ + V I LT +E+ ++ L N +T+E L Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228 >gi|284041764|ref|YP_003392104.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945985|gb|ADB48729.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 226 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ L +I L + V + GED + + +DAI+LD+ L I GF Sbjct: 1 MRVLVIEDEPKLRAAIRRGLTEDGLVCDVAERGEDALWMAGSSAYDAIVLDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R LR + PV +L+ ++ED+V GL +GADDY++KPF+ EL AR+RA+ RR Sbjct: 61 ETCRRLRADGVWAPVLMLTARDAVEDRVAGLDTGADDYVTKPFSLAELSARLRALARRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL+++ + V I L+ +EY ++E R L + + L+ + Sbjct: 121 VQRPAVLAAGDLTLDPATRRVARGEVEIELSAREYALLEAFMRRPGEVLERHVLLDLAW- 179 Query: 181 GRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 GRD E ++DV++ LR+++ G + IET+ G GY LR + Sbjct: 180 GRDYENRSNVVDVYVRYLRERVDRPFGAEA-IETLRGVGYRLRAD 223 >gi|16126998|ref|NP_421562.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221235790|ref|YP_002518227.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13424362|gb|AAK24730.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220964963|gb|ACL96319.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 225 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L ++L L + V GE+ L + +DA+ILDLGL + G Sbjct: 1 MRILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQYLGENEPYDAVILDLGLPKVDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R ++TPV IL+ + DKV G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 SVLERWRRGNVTTPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + G L ++ A V G + LT EY+++ + + + + + + HLYD Sbjct: 121 GHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMIMHQGRVIGRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VFI +LRKKL G + IETV G GY L Sbjct: 181 QDFDRDSNTIEVFIGRLRKKL-----GADRIETVRGLGYRL 216 >gi|75763869|ref|ZP_00743514.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488640|gb|EAO52211.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 236 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 QVLQRLRADNNTTPVLLLTAKDXIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVGGTGYVLR 233 >gi|307825418|ref|ZP_07655637.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307733593|gb|EFO04451.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 224 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD LA + L ++V G +L + FD I+LDLGL D+ G Sbjct: 1 MNILLIEDDAVLADGLTHTLSGSGYSVTSATTGGYADQLLQAQGFDLIVLDLGLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR KI P+ IL+ + D++ G++ GADDY++KPF EL AR+ A++RR Sbjct: 61 ELLRKLRSRKIPLPILILTARDGVNDRINGIEQGADDYMTKPFELRELEARVHALIRRCY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + IV G L+++ V V G I+L+ +EY ++E+L ++ ++K+ L Sbjct: 121 GGFSNDIVIGRLALDTHNHQVLVDGQTINLSAREYGVLEILLIQAGKVVSKDRIAQRLAV 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D +++++ +LRK++ I TV G GY+L E + DE Sbjct: 181 DGDALTDNAVEIYVHRLRKRIEPYGA---VIRTVRGLGYLL-ERSDDE 224 >gi|293603700|ref|ZP_06686119.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|292817874|gb|EFF76936.1| two component response regulator [Achromobacter piechaudii ATCC 43553] Length = 234 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 130/230 (56%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ A + L F V + G DG L +D ++LD+ L D+ G+ Sbjct: 5 MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDVDGW 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++RALR A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 65 RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 124 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q I DL ++L + G RI+LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 125 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 D + + +IDV I +LR K+ +A K I TV G GY L +A D+ Sbjct: 185 DMNFDSDSNVIDVAIRRLRAKIDDAFNPK-LIHTVRGMGYTL--DAPDDA 231 >gi|114567685|ref|YP_754839.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338620|gb|ABI69468.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 223 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 129/223 (57%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ LA ++ +L + V V GE G++ +D +ILD+ L + G Sbjct: 1 MRLLLVEDERQLAEALSELLIKNRYAVDVVYDGEAGLDYALTGIYDLVILDIMLPRMNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR+ IS+PV +L+ +EDKV GL SGADDY+ KPF EEL+ARIRA+ RR + Sbjct: 61 EILRQLRLNGISSPVMLLTAKGELEDKVSGLDSGADDYLVKPFAAEELLARIRALSRR-K 119 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + D ++NL +E + + LT KE+ ++ R N L+K+ + + Sbjct: 120 GEMIVDDTLDIADFTLNLSTYELEGKNSSVRLTRKEFDIMRYFVYRPNRVLSKDELIEKV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + I+V+I LRKKL++ G + I T+ G GY L Sbjct: 180 WGFDSEADYNNIEVYISFLRKKLAH-IGSQAAISTLRGIGYKL 221 >gi|228908952|ref|ZP_04072782.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850674|gb|EEM95498.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 226 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E ++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEYYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223 >gi|194365942|ref|YP_002028552.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] gi|194348746|gb|ACF51869.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 232 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + + L + V + G DG+ L + E+ +ILD+ L + G+ Sbjct: 1 MKLLIVEDEPKTGNYLRQGLIEAGYVVDLASNGIDGLHLAESGEYQLVILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR A PV L+ SSI D+V+GL+ GADDY++KPF EL+AR+R ++RR + Sbjct: 61 TVLSRLRGAGWPLPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q IV DL V+ + VE G RI L+ KEY ++ELL+ R+ L + + + ++ Sbjct: 121 AVPQVERIVIADLVVDTQRRRVERGGQRIALSQKEYTLLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I TV G GYVL Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFADK-LIITVRGMGYVL 221 >gi|209695438|ref|YP_002263367.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238] gi|208009390|emb|CAQ79664.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238] Length = 219 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ L I L++ N+ ++ G D + +DAI+LDLGL + G Sbjct: 1 MKILVVEDDQRLGQQIIDALEANNWTPELSQDGIDALYRATSESWDAIVLDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR ++ PV ILS ++ ++ GL +GADDY++KPF EL+AR+R +RR+ Sbjct: 61 TVLKGLRDESVNIPVIILSARDTLTQRIDGLNAGADDYLTKPFELPELIARLRVQLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S++ G+LS++ + + G I LT EY+++ K +++ + H+Y Sbjct: 121 GSASSVLKIGNLSLDTCSSKIVWYGETIELTALEYKVVAYFMHNKEKVISRTELVEHIYK 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VFI ++R+KLS + I+TV G GY L Sbjct: 181 QDFDRDSNTIEVFIGRIRRKLSPSV-----IKTVRGLGYQL 216 >gi|187930667|ref|YP_001901154.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|241664859|ref|YP_002983219.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12D] gi|309780335|ref|ZP_07675086.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|187727557|gb|ACD28722.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240866886|gb|ACS64547.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|308921038|gb|EFP66684.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 226 Score = 139 bits (349), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 130/229 (56%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LAH + L+ F V GE L +D ++LDL L + G Sbjct: 1 MKLLLIEDNAPLAHWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPTLSGQ 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + PV IL+ I+DKV L +GADDY+ KPF EL+ARI+ +VRRS Sbjct: 61 GVLQRLRGRRNPVPVLILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL+ + ++T + G + L +E+ ++E+L L+ T++K +N ++ Sbjct: 121 PDQSVELQCGDLTYHTGSRTFNLAGQPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 DE + I+++I +LRKKL ++A I T+ G GY+LR+ + ++ Sbjct: 181 MDDEASPEAIEIYIHRLRKKLEHSAA---TIVTLRGLGYLLRDASAAQS 226 >gi|218534663|ref|YP_002424425.1| two component heavy metal response transcriptional regulator [Yersinia pseudotuberculosis] gi|218473132|emb|CAQ76560.1| two component heavy metal response transcriptional regulator [Yersinia pseudotuberculosis] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 134/223 (60%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + + L F V V+ G +G+ +++DAIILD+ L + G+ Sbjct: 1 MRLLLVEDEEKTSTYLNRALSESGFTVDVSADGAEGLHYALEFDYDAIILDVMLPGMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL +R AK TPV +LS S++++V+GL+ GADDY+ KPF+ ELVARI+A+VRR Sbjct: 61 RVLEGVRAAK-QTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRA 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + + DL ++L A+ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 TDGADITQLQIHDLHLDLLARRVFRAGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +++V I +LR K+ +A + TV G GYVL Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKV-DAPFDIKLLHTVRGMGYVL 221 >gi|58000301|ref|YP_190195.1| DNA-binding transcriptional activator CusR [Escherichia coli] gi|47716815|gb|AAT37590.1| SilR [Escherichia coli] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L+ F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N G K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYML 221 >gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 219 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA S+ L L +E + V V G +G+ +D I+LD+ L + G+ Sbjct: 1 MRLLIVEDERRLARSLALGLGAEGYAVDVAHDGTEGLHRATEGGYDLIVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A TP+ +L+ D+ GL +GADDY++KPF+ L AR++A++RR Sbjct: 61 RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G L ++ A+ V + G I LT KEY ++E L LR ++K L H++D Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++V++ LR+KL G I TV G GY+L Sbjct: 181 FAYSGDPNIVEVYVSTLRRKL-----GAGLIRTVRGAGYLL 216 >gi|110597758|ref|ZP_01386042.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] gi|110340665|gb|EAT59145.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] Length = 222 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ +A ++ L+ E F V + G+ G+++ E+D +I+D + + G Sbjct: 1 MRLLIIEDEPGIARFLKDGLEEEYFAVDLAHDGKTGLDMAMTNEYDLLIIDWMIPALSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ L+ ++ED V GL +GA+DYI KPF EEL+ARIR +R + Sbjct: 61 EVCRQVRKGGSTVPILFLTAKDTLEDVVFGLDAGANDYIKKPFEFEELLARIRVQLRTTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +SL V G LS+N V + LT KE+ ++E L K+ T+ + H++D Sbjct: 121 RVEESLSV-GSLSINPVTHQVFSGSTELTLTPKEFALLEYLIRNKDRVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +IDV+I LR+KL +A G N I+T+ G GY++RE+ Sbjct: 180 IHFDSDTSVIDVYITFLRRKLESAGCG-NIIQTIRGVGYIVRES 222 >gi|325295161|ref|YP_004281675.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065609|gb|ADY73616.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 217 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 133/221 (60%), Gaps = 10/221 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKF-YEFDAIILDLGLTDIP 58 RI ++EDD ++ + ++ +L E F V V GE I EL ++ E+D IILD+ L + Sbjct: 2 FRIAVVEDDISIGNLLKRILSKEGFYVKVYSTGEALINELFEYGKEYDLIILDVMLPGMN 61 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E R LR K+ P+ +L+ +S +DKV GL SGADDY++KPF +EL+ARIRA++RR Sbjct: 62 GVETCRFLRERKVKVPILMLTALSEEDDKVIGLDSGADDYVTKPFGVKELLARIRALLRR 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ T + + VE++G +I LT KE +++++L K T ++KE L + Sbjct: 122 K----ETISGTQSKEIVFNGNFVEIEGKKIELTKKEIEVLKILFENKGTPVSKETLLLKV 177 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ RD + + IDV I LR KL N I+TVWG GY Sbjct: 178 WESRDVSK-RTIDVHIKHLRDKLGKFG---NRIKTVWGVGY 214 >gi|255656953|ref|ZP_05402362.1| DNA-binding response regulator [Clostridium difficile QCD-23m63] gi|296452205|ref|ZP_06893913.1| transcriptional regulator FeuP [Clostridium difficile NAP08] gi|296877559|ref|ZP_06901590.1| transcriptional regulator FeuP [Clostridium difficile NAP07] gi|296258944|gb|EFH05831.1| transcriptional regulator FeuP [Clostridium difficile NAP08] gi|296431410|gb|EFH17226.1| transcriptional regulator FeuP [Clostridium difficile NAP07] Length = 223 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 125/219 (57%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+K L+++I+ L++ F V + + G DG E ++DAI+LDL L D G Sbjct: 1 MRVLIIEDNKELSYNIKSGLENAGFVVDIANCGLDGEEKAFVNDYDAILLDLNLPDKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R ++TPV I++ + + +GL GADDYI KPF EL ARI+A++RR Sbjct: 61 EILEFFRSNNLNTPVIIVTARDGVNELAKGLDLGADDYIVKPFQIIELRARIQAVIRRFY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G I +G +++N ++ V V + L KE+ ++E L+ R ++ H+YD Sbjct: 121 GRTNPNIESGPITINPSSRKVYVYNEEVTLGTKEFDIVEYLASRYPDIVSGIDISEHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P ++ V I +L+KKL A GK I T G GY Sbjct: 181 EYFDPLSSVLRVHIARLKKKLREVA-GKEIIITTRGIGY 218 >gi|25026834|ref|NP_736888.1| sensory transduction protein [Corynebacterium efficiens YS-314] gi|259506103|ref|ZP_05749005.1| phosphate regulon transcriptional regulatory protein PhoB [Corynebacterium efficiens YS-314] gi|23492113|dbj|BAC17088.1| sensory transduction protein [Corynebacterium efficiens YS-314] gi|259166319|gb|EEW50873.1| phosphate regulon transcriptional regulatory protein PhoB [Corynebacterium efficiens YS-314] Length = 240 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K LA +E L F G D + + + D +ILDLGL ++ G E Sbjct: 14 RVLIVDDEKPLAQMVETYLLRAGFETVQAHTGIDAVHEARRFSPDVVILDLGLPELDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R A + +L+ S EDK+ GL GADDYI+KPF ELV R+RA++RR R Sbjct: 74 VCRQVR-AFSDCYILMLTARGSEEDKITGLTMGADDYITKPFGIRELVTRVRAVMRRPRI 132 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G LI+ GDL ++ A TV V G + +T E+ ++ L+LR ++ + Sbjct: 133 TVTGPGTDAPLII-GDLVIDPSAHTVRVGGGAVDITPTEFDLLLALALRPGRVCSRRELV 191 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + +I+DV I LR+KL A G+ I+TV G GY L Sbjct: 192 TEVWDTTWVGDERIVDVHIGNLRRKLGTDARGRGLIDTVRGVGYRL 237 >gi|187478800|ref|YP_786824.1| two-component system response regulator [Bordetella avium 197N] gi|115423386|emb|CAJ49920.1| two-component system response regulator [Bordetella avium 197N] Length = 231 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 123/232 (53%), Gaps = 9/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRIL+ EDD LA + +S N Y D DG+ FD +ILDLGL + Sbjct: 1 MRILIAEDDSILADGLS---RSLRHNGYAVDAVRDGLAADSALAAQPFDLLILDLGLPQV 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR LR PV IL+ S+E +V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 TGLEVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +LI G L + + V H + L+ +E ++E+L R ++K ++H Sbjct: 118 RGAGGGSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L + +E I+V++ +LRKKL +G K I TV G GY L + T Sbjct: 178 LCEWGEEVSTNAIEVYVHRLRKKL-EPSGVK--IITVRGLGYCLERDQGAAT 226 >gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB family [Candidatus Kuenenia stuttgartiensis] Length = 224 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+K +A ++ L+ ++ V + G DG+ L +D I++D+ L I G Sbjct: 1 MKILIIEDEKKIAKYLKQGLEENSYTVDIAHNGIDGLHLATHENYDLIVVDIMLPGINGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R I TP L+ + S+ DKV GL GADDYI KPF+ EL+ARIRA +RR Sbjct: 61 EVLKQIRNTGIHTPAIFLTAIDSVNDKVNGLDIGADDYIVKPFSFSELLARIRACMRRRT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S + TG+++++ + V +I LT E+ ++E LT+ M H++D Sbjct: 121 DNYVSNLKTGNVTLDPKTRKVFRDKQKIELTPIEFSILEYFMRNPGQILTRTMISEHIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +IDV I +LR KL K I TV GYVL E Sbjct: 181 YNYESFSNVIDVHISRLRNKLEKDF-DKGIIHTVRRVGYVLEE 222 >gi|66044378|ref|YP_234219.1| heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|63255085|gb|AAY36181.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|330969196|gb|EGH69262.1| heavy metal response regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 225 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L + +ILD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ I+D++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTAREQIDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH I DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPIQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219 >gi|255036502|ref|YP_003087123.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254949258|gb|ACT93958.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ +A +I L +ENF + G G ++ +FD ++LD+ L + G++ Sbjct: 3 KILIVEDDRRIAQNIFRGLAAENFEAEIAYDGITGKQMALEKKFDLVLLDVNLPGMKGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LRV K S P+ +L+ IEDKV GL SGADDYI KPF+ EL+ARI A +R S Sbjct: 63 VCQQLRVYKPSLPIIMLTAFGEIEDKVEGLNSGADDYIVKPFDFRELLARIYAALRVSDL 122 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H ++ ++ DL +NL K V G I LT KE+ ++E L + ++K H Sbjct: 123 MHPETSDKILRIADLEMNLGTKQVRRAGQVIDLTAKEFALLEYFLLHRGRVVSKMDLAEH 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +P +++V+I LRKK+ K I T G GY+++E Sbjct: 183 VWHLNFDPGTNVVEVYINYLRKKVDKDFPTK-LIHTRPGMGYIMKE 227 >gi|218248106|ref|YP_002373477.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060567|ref|YP_003138455.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218168584|gb|ACK67321.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256590733|gb|ACV01620.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 225 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D+ L + +L E + V VTD G G EL +D +ILD L + PG Sbjct: 1 MKILLVDDEPELTEPLTHVLSHEGYEVDVTDNGNIGYELAVNNSYDLLILDWMLPNKPGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ +ALR +TPV L+ ++ D+V GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 EICQALRSQGNTTPVLFLTAKDTLNDRVLGLDAGADDYLVKPFELRELLARVRALLRRSP 120 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL ++ D + QG ++L+ KE Q++ LT E Sbjct: 121 HLDPTPSTKLKIADLELDRDNQVAYRQGRGVNLSDKEVQLLSYFMENPGQLLTHEQIYQQ 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+D ++P ++ I LR+K+ A G I TV+G+GY Sbjct: 181 LWDQTEQPNSNVVAALIRLLRRKIE-AEGELPLIHTVYGKGY 221 >gi|258655134|ref|YP_003204290.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558359|gb|ACV81301.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 225 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++D+ L ++ + L + +F+V + G +E + D ++LDLGL D+ G E Sbjct: 3 RVLLVDDEPQLLRALRINLAARHFDVVTAEDGSGALEAAATHPPDLVVLDLGLPDLDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LRV + P+ +LSG DKV L +GADDY++KPF+ +EL ARIRA+ RRS G Sbjct: 63 VIRRLRVWT-AVPIIVLSGRVGSSDKVLALDAGADDYVTKPFSLDELFARIRAVTRRSTG 121 Query: 122 -HAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + +V G ++L +T+ +G HLT E+Q++E+L +T+ L ++ Sbjct: 122 ADASAEVVVGRFRIDLADRTIAADEGEPPHLTRTEWQLLEILLTHPGKLITQRSLLQQVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E E I ++ LR+KL ++ T G GY Sbjct: 182 GPAYEQETHYIRQYMAHLRRKLEADPARPRHLLTEPGMGY 221 >gi|206580423|ref|YP_002239584.1| transcriptional regulatory protein BasR [Klebsiella pneumoniae 342] gi|288936427|ref|YP_003440486.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290510517|ref|ZP_06549887.1| transcriptional regulatory protein basR/pmrA [Klebsiella sp. 1_1_55] gi|206569481|gb|ACI11257.1| transcriptional regulatory protein BasR [Klebsiella pneumoniae 342] gi|288891136|gb|ADC59454.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289777233|gb|EFD85231.1| transcriptional regulatory protein basR/pmrA [Klebsiella sp. 1_1_55] Length = 223 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+IL+IEDD L + L ++SE + V+ E + L + + I+LDLGL D G Sbjct: 1 MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNH-YSLIVLDLGLPDEDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 L +R K++ PV IL+ ++ED++ GL +GADDY+ KPF EEL ARIRA++RR Sbjct: 60 LHFLTRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRH 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I GDL +N+ + V + + LT KEY ++ L ++ + + +E+ N +Y Sbjct: 120 NNQGDNEISVGDLRLNVTRRLVWLGETALELTPKEYALLSRLMMKAGSPVHREILYNDIY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +EP ++V I LR+K+ GK+ I TV G GY+L Sbjct: 180 SWDNEPATNTLEVHIHNLREKI-----GKSRIRTVRGFGYML 216 >gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G +I L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVGGTKIDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKVEPDPGAPRYLVTVRGLGY 222 >gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEAAPVALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|222087616|ref|YP_002546153.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221725064|gb|ACM28220.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 222 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA + L+ + V + GEDG + K + +ILDL L I G Sbjct: 1 MRLLIVEDNRELASWLGKALRQAQYAVDIAHDGEDGEHMLKVASYAVVILDLSLPKIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR PV IL+ +S++ ++ GL SGADDY++KPF EL ARIRA VRR Sbjct: 61 TLLKRLRQGGNKVPVIILTANASLDGRITGLDSGADDYLAKPFEIAELEARIRAAVRRGH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A I GDL + + + G + LT +E+ ++E L ++ TT+TK ++ Sbjct: 121 DRAAPEIAVGDLVFDGGTRQFSLGGETLALTPREHAVLEHLVMKVGTTVTKTALSESVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + I++++ ++RKKL +A I T+ G GY+LR Sbjct: 181 FDDLADTSAIEIYVHRVRKKLEGSA---VQIATLRGLGYLLRH 220 >gi|167769573|ref|ZP_02441626.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM 17241] gi|167668541|gb|EDS12671.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM 17241] Length = 224 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ +D++ L LK++ + V D G+D + +D ILD+ + G Sbjct: 1 MRILVADDERELLDITVKRLKAQGYAVDGCDNGDDAAYYLEQTPYDLAILDIMMPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR A + PV +L+ + ++ D+V GL +GADDY++KPF +EL+ARIR ++RRS Sbjct: 61 SILRGLRAAGRTLPVLLLTALDAVGDRVSGLDAGADDYLTKPFAFDELLARIRVLLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL++ L +TV G I L+ KEY ++E L K L++ +H++D Sbjct: 121 SDKAVVLTAEDLTMELSTRTVRRAGQEITLSSKEYAILEYLLRNKGVVLSRAQLESHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I+DV++ LR+K+ + K I+TV G GY +R+ Sbjct: 181 YDFEGGSNIVDVYVRYLRRKIDDPF-EKKLIQTVRGVGYTIRQT 223 >gi|153814218|ref|ZP_01966886.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756] gi|317500010|ref|ZP_07958245.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium 8_1_57FAA] gi|331087760|ref|ZP_08336686.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848614|gb|EDK25532.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756] gi|316898495|gb|EFV20531.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium 8_1_57FAA] gi|330409741|gb|EGG89177.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium 3_1_46FAA] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 132/227 (58%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + I L+ E V GE+ +E K E+D ++LD+ L + GF+ Sbjct: 4 RILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYAKACEYDLVLLDVMLPKLDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R PV +L+ S DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIREFS-DMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +++ G L ++ +++ V + I+LT KE+ ++ELL++ N ++E LN Sbjct: 123 RKEPAGGPVLIKGSLKIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 182 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ G D P + + +DV I +LR+K+ Y+ T WG GY ++ Sbjct: 183 VW-GYDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYFQD 228 >gi|291295420|ref|YP_003506818.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470379|gb|ADD27798.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 219 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 130/225 (57%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+L++ED+ +LA +++ L ++ F V + + L FD ++ D+ L + P Sbjct: 1 MRLLIVEDEPSLASTLKESLSAQGFQVTLAASRSEAEALVWEQPFDLLLFDVMLPEGPEA 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GFE+ +ALR + P+ L+ ++ D+VRGL+ G DDY+ KPF ELVAR++A+ RR Sbjct: 61 GFELAQALRESGFHQPILFLTAREALPDRVRGLEWG-DDYLPKPFALAELVARLKALGRR 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q L ++ + + L+ + V QG + LT KEY ++ELL+L K T+E L + Sbjct: 120 GEIKPQVLQISPQVELALEHRQVRRQGELVRLTAKEYLVLELLALNKGRVFTREEILERI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +IDV++ LRK+L G++ IETV G GY L E Sbjct: 180 WGPGFEADSNLIDVYVKNLRKRL-----GEDVIETVRGVGYRLGE 219 >gi|222087224|ref|YP_002545759.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221724672|gb|ACM27828.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 219 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD+ + ++ + + V +V +L D E+ ++ I+LDL L D G Sbjct: 1 MRILLVEDDETIGSAVRDHIAATTHAVDWVKNLA-DATEVTSAVKYGLILLDLQLPDGVG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + L+ LR TPV IL+ I D++ GL SGADDY+ KPFN EL ARI A+ RR Sbjct: 60 IDFLKKLRRKPDETPVIILTARDQISDRIEGLNSGADDYLVKPFNLGELSARILAVARRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q I DL ++ + V + G + LTG+E+ +++LL R ++K+ LY Sbjct: 120 SGSPQPTIRFADLEIDQPQRRVRLDGKDVVLTGREWAVLDLLVTRPGAIISKDQIEEALY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E ++V++ +LRKK+ GK+ I T G GY L E Sbjct: 180 AFGSEIESNTVEVYVSRLRKKI-----GKDRIRTARGVGYCLGE 218 >gi|254391205|ref|ZP_05006411.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294813637|ref|ZP_06772280.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704898|gb|EDY50710.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326236|gb|EFG07879.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 279 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 130/228 (57%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ AL+ + + L+ E + V G + + ++ DA++LD+ L D+ G Sbjct: 53 VRVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEAREFQPDAVVLDVALPDMDGL 112 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +L LR + PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RR Sbjct: 113 TLLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 172 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S +SL+ GDL+++ D++ V G IHLT E++++ L L+K L+ Sbjct: 173 AASAARGESLLAVGDLTLDEDSREVSRGGQAIHLTATEFELLRYLMRNPRRVLSKAQILD 232 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++++++ LRKK+ AG I T G GY+++ Sbjct: 233 RVWSYDFGGQANVVELYVSYLRKKID--AGRAPMIHTRRGAGYLIKPG 278 >gi|329927392|ref|ZP_08281651.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328938531|gb|EGG34916.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 235 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED++ ++ + L+ + F+ ++T+ DG++ + + D IILDL L D G EV Sbjct: 7 VLIIEDERDISRIVNDYLRVQGFSTFITENARDGLQGVRNRQPDFIILDLTLPDADGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R LR S P+ ILS SS DKV L GADDY++KPF+ ELVAR++A +RR Sbjct: 67 CRELRTL-TSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMADP 125 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + Q L+ G LS++ A+ V I L+ KE+ ++ L+ N TK L+ Sbjct: 126 KLQAATQQLLRFGTLSIDKSARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQ 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E I V+I +LR+KL + YI TVWG GY Sbjct: 186 VWGYSAYVEDNTITVYIRRLREKLERSGIKSAYITTVWGVGY 227 >gi|300311799|ref|YP_003775891.1| two component heavy metal response transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074584|gb|ADJ63983.1| two component heavy metal response transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 135/231 (58%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ ++ + L + V + G DG L +++D I+LD+ L + GF Sbjct: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ S+ED+++GL GADDY+ KPF+ EL+AR++A+ RR R Sbjct: 61 SVLRALRKVK-ETPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL ++L ++ G RI LT KE+ ++ +++ R+ L+K ++D Sbjct: 120 AQEPAQLRIGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + +++V I +LR K+ +A + + TV G GYVL A ++ + Sbjct: 180 MNFDSNTNVVEVAIKRLRAKI-DAPFEQKLLHTVRGMGYVLEPRATADSSD 229 >gi|293365220|ref|ZP_06611937.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|306825415|ref|ZP_07458755.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307703759|ref|ZP_07640700.1| response regulator [Streptococcus oralis ATCC 35037] gi|315612983|ref|ZP_07887894.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|322374486|ref|ZP_08049000.1| DNA-binding response regulator CiaR [Streptococcus sp. C300] gi|291316670|gb|EFE57106.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|304432353|gb|EFM35329.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307622594|gb|EFO01590.1| response regulator [Streptococcus oralis ATCC 35037] gi|315315093|gb|EFU63134.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|321279986|gb|EFX57025.1| DNA-binding response regulator CiaR [Streptococcus sp. C300] Length = 224 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 134/223 (60%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I+TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD+ VNL V+V+ + L GKE++++ +N L K + L+ Sbjct: 121 KFNENTLTYGDIVVNLSTNEVKVEDTPVELLGKEFELLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL A +N ++T+ GY+L++ Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTAFAEN-LQTLRSVGYILKD 222 >gi|289678146|ref|ZP_06499036.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. syringae FF5] gi|330895769|gb|EGH28058.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. japonica str. M301072PT] gi|330950912|gb|EGH51172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae Cit 7] Length = 225 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ A + L + + V V G +G+ L + +ILD+ L + GF Sbjct: 1 MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A+ TPV +L+ ++D++RGL+ GADDY+ KPF+ ELVAR++A+ RRS Sbjct: 61 GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH I DL ++L ++ G R+ LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR KL K + T+ G GYVL Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219 >gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVAGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|262282356|ref|ZP_06060124.1| transcriptional regulatory protein CiaR [Streptococcus sp. 2_1_36FAA] gi|262261647|gb|EEY80345.1| transcriptional regulatory protein CiaR [Streptococcus sp. 2_1_36FAA] Length = 224 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +STPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKDLREKGVSTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++VNL T V G + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDVTVNLSTNTTLVNGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ K+RKKL N ++T+ GY+L+ Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTTFANN-MQTLRSVGYILK 221 >gi|134291674|ref|YP_001115443.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134863|gb|ABO59188.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 220 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 122/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDDK + +E L V G + +D ++LDLGL + G Sbjct: 1 MRVLLVEDDKLIGSGVEDGLSEAGMTVDWAHDGRHAQLALETTPYDLVVLDLGLPRMSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + TPV +++ ++ D+V GL +GADDY+ KPF+ ELVAR RA+VRRS+ Sbjct: 61 ELLAWLRKRRDHTPVLVMTARDTVADRVSGLSAGADDYLGKPFDLTELVARCRALVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQ-MIELLSLRKNTTLTKEMFLNHLY 179 G + I GDLSV+ T RI LT +E ++ELLS + L++ + LY Sbjct: 121 GRSTDTIEYGDLSVDPALMTATRGAERIALTSRECALLVELLS-NQGRPLSRAQLQDSLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E E I+V + LRKKL G + I T+ G GYV+ Sbjct: 180 GWNEEIESNAIEVHVSNLRKKL-----GADLIRTIRGVGYVV 216 >gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 1 MRLLVVEDNASLLESIVEILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223 >gi|229051662|ref|ZP_04195131.1| Two-component response regulator [Bacillus cereus AH676] gi|228721695|gb|EEL73170.1| Two-component response regulator [Bacillus cereus AH676] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYDGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223 >gi|326441956|ref|ZP_08216690.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 235 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 130/228 (57%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ AL+ + + L+ E + V G + + ++ DA++LD+ L D+ G Sbjct: 9 VRVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEAREFQPDAVVLDVALPDMDGL 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +L LR + PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RR Sbjct: 69 TLLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 128 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S +SL+ GDL+++ D++ V G IHLT E++++ L L+K L+ Sbjct: 129 AASAARGESLLAVGDLTLDEDSREVSRGGQAIHLTATEFELLRYLMRNPRRVLSKAQILD 188 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++++++ LRKK+ AG I T G GY+++ Sbjct: 189 RVWSYDFGGQANVVELYVSYLRKKID--AGRAPMIHTRRGAGYLIKPG 234 >gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24] gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24] gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24] Length = 226 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|289207427|ref|YP_003459493.1| transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288943058|gb|ADC70757.1| two component transcriptional regulator, winged helix family [Thioalkalivibrio sp. K90mix] Length = 238 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 126/219 (57%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+++IEDD AL I +++ V G+ G+ L Y D ++DLGL + G Sbjct: 3 LRVVVIEDDLALRSQIAEEMENNGCRVDTASDGDTGLYLLTEYHCDIAVVDLGLPGMDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+R R K P+ IL+ +DKV GL++GADDY++KPF+ +ELVAR+RA+ RRS Sbjct: 63 DVIRKAREVKPQLPILILTARDRWQDKVEGLEAGADDYLTKPFHIQELVARLRALARRSL 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G L ++ V + + LT EY+++ L + L+KE+ ++LY+ Sbjct: 123 QAGREQLQFGPLVIDTATDDVRLNDEPVSLTTFEYRLLLTLVRQPGRVLSKEVLADYLYE 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +I+V I +LR+KL + G IET+ GRGY Sbjct: 183 HDEDRESNVIEVLIGRLRRKL-DPGGSLGLIETLRGRGY 220 >gi|209884019|ref|YP_002287876.1| DNA-binding response regulator [Oligotropha carboxidovorans OM5] gi|209872215|gb|ACI92011.1| DNA-binding response regulator [Oligotropha carboxidovorans OM5] Length = 220 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD L ++ + ++N +V +VT L L +D I+LD+ L D G Sbjct: 1 MRILLIEDDTILGAAVRDHVVADNHSVDWVTRLDAANDHLGS-AAYDLILLDMMLPDGQG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 LR LR TPV I++ + I D+++GL GADDY++KPF+ EL+AR+ A+ RR Sbjct: 60 ITFLRDLRRKGCVTPVIIMTALDQISDRIQGLNVGADDYMTKPFDLSELLARLNAVGRRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ L+ GDL ++L A+T+ G ++LT +E+ ++E L+KE LY Sbjct: 120 SGNPNPLVKIGDLQIDLAARTITRGGRPVNLTAREWALLEAFIQHPGQVLSKEQLEERLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V + ++RKKL +A +ETV G GY L Sbjct: 180 AFGAEVESNTIEVHVSRMRKKLGSA-----IVETVRGIGYRL 216 >gi|315222895|ref|ZP_07864775.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|319939034|ref|ZP_08013398.1| transcriptional regulatory protein ciaR [Streptococcus anginosus 1_2_62CV] gi|315188034|gb|EFU21769.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|319812084|gb|EFW08350.1| transcriptional regulatory protein ciaR [Streptococcus anginosus 1_2_62CV] Length = 224 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I++ S+ DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGVTTPVLIMTAKESLNDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++VNL T V G+ + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDVTVNLSTNTTLVDGNEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL N ++T+ GY+L++ Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTTFANN-LQTLRSVGYILKD 222 >gi|30021310|ref|NP_832941.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|29896864|gb|AAP10142.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 224 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR+ Sbjct: 61 HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRTT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYDGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221 >gi|297623818|ref|YP_003705252.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164998|gb|ADI14709.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 225 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 132/228 (57%), Gaps = 17/228 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60 +L+IED+K +A I+L L++E++ VT G G L KF E D ++LDL L + G Sbjct: 7 VLIIEDEKEIAKFIDLELQAESYETVVTYDGVTG--LSKFRELNPDLVVLDLMLPVLDGL 64 Query: 61 EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R RV K S TP+ IL+ S++DKV GL SGADDY+ KPF+ EEL+AR+RA +RR Sbjct: 65 EVAR--RVRKTSNTPIIILTAKDSVDDKVLGLDSGADDYLVKPFSIEELLARVRAHLRRV 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL +NLD + V G RI L+ KE++++EL + + ++ Sbjct: 123 NPAVTGEVRVADLVMNLDGREVFRDGRRIELSAKEFELLELFARSPGKVFNRFEIEEKVW 182 Query: 180 DGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE ++DV++ LR+KL + G + I TV G GYVLRE Sbjct: 183 -----PEYTGGSNVVDVYVGYLRRKLEH-DGERRLIHTVRGVGYVLRE 224 >gi|312135255|ref|YP_004002593.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311775306|gb|ADQ04793.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 223 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V V G DGI + K D +ILD+ L G+ Sbjct: 1 MKILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGISVFKNEMPDLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V R LR KIS P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+ Sbjct: 61 DVCRELR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +G + ++V +L+VNL V+++ I + KE +++ L+ N T+E L+H Sbjct: 119 QGEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDH 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV I ++R+K+ I+TVWG GY Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIEKDKYPWK-IKTVWGVGY 219 >gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 130/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ++ + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-SRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|119776138|ref|YP_928878.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119768638|gb|ABM01209.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 224 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 125/228 (54%), Gaps = 14/228 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L ++ LK F VTD D L K ++D +ILD+GL D G Sbjct: 1 MKLLLVEDNAMLVKELQKQLKQAGFVTDVTDKVVDADYLIKETQYDCVILDIGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R I TPV +L+ S +KV G +GADDY+ KPF+ +EL+ARI A++ R+ Sbjct: 61 TLLEKWRTEGIHTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIHALINRAH 120 Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQ-GHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174 G S L +G V LD VQ G ++H LT E++++++ L L+K Sbjct: 121 GRPASPGKQLSYSG---VVLDESQQTVQVGEQVHELTAMEFRLLKIFLLSPKKLLSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220 >gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.] Length = 234 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 131/226 (57%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ +L ++ + +++ + V GE+ + FD IILD+ + I G Sbjct: 10 MKILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLFEAPFDLIILDIMMPKIDGL 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R + I TPV +L+ +EDK++GL GADDY+ KPF+ +EL+AR+RA+ RRS Sbjct: 70 AVLQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRRSG 129 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +S++ DL ++ + V G + LT +E+ ++E L KN +++ H++ Sbjct: 130 GQTESVLQVFDLKLDTVTRDVTKDGKPVELTPREFSILEFLLYNKNRVVSRFSLAEHVWG 189 Query: 181 GRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P +DV I LR K+ N + I+T+ G GY+++++ Sbjct: 190 DAFDPFSMSNFMDVHIKNLRHKIENFDNNR-IIQTIRGVGYIIKDS 234 >gi|89092005|ref|ZP_01164960.1| Two component Transcriptional regulator, Winged helix family protein [Oceanospirillum sp. MED92] gi|89083740|gb|EAR62957.1| Two component Transcriptional regulator, Winged helix family protein [Oceanospirillum sp. MED92] Length = 219 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD L IE+ L+ + V G + + D IILDL L DI G Sbjct: 3 MHVLLVEDDPLLGQVIEIKLQERQYQVDWIQSGSAVLSTVRNLHPDIIILDLNLPDIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR ISTPV IL+ ++E++V GL GADDY++KPF +EL AR+RA+ RR Sbjct: 63 EILKRLRAENISTPVLILTARHAVEERVNGLDLGADDYLTKPFEMDELEARLRAVQRRLH 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ I GD+ ++ A+ V +G I + +E+ ++ LL +T+ LY Sbjct: 123 GRSKEEITFGDIKIDSAARQVFFKGSPIEASRREFDLLVLLLNNTGRVMTRAKIEATLY- 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ E ++V I LRKKL GK I TV G GY + E Sbjct: 182 -ADDVESNALEVHIHNLRKKL-----GKELISTVRGVGYYVAE 218 >gi|187928801|ref|YP_001899288.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|241114328|ref|YP_002973803.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|187725691|gb|ACD26856.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240868901|gb|ACS66559.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 228 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG L ++D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDEPKTGEYLQQGLTEAGFVVDLARNGTDGRHLAMSGDYDLLLLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++++LR A+ + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QIVQSLRAAEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGT 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S I DL ++L + G +I LT KE+ ++ELL R+ L + + + ++ Sbjct: 121 GAVSSDRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I+TV G GYVL Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDHFEPK-LIQTVRGMGYVL 221 >gi|225028279|ref|ZP_03717471.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353] gi|224954325|gb|EEG35534.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353] Length = 224 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L H I L++E + V G D + +DAI+LD L GF Sbjct: 1 MKILVVEDEPDLNHIIAKHLQAEGYIVDSCFNGNDAVYYITEESYDAILLDAMLPGKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R KI TPV L+ ED V GL GADDY+ KPF+ EE++AR+R I++RS Sbjct: 61 EVLKEIRSQKIETPVMFLTARDQTEDIVTGLDFGADDYVVKPFSFEEVLARLRVIIKRSP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++ D K+V G I L+ KEY ++E + KN L++ ++ + Sbjct: 121 QEHGTTYECADLLIDTDKKSVTRAGTDIELSPKEYAILEYMVRNKNIALSRLQIESNAWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E IIDV+I LRKK+ + K I+TV G GY+L E Sbjct: 181 LDFEDESNIIDVYIRYLRKKIDDDFDVK-LIQTVRGIGYMLTE 222 >gi|331083762|ref|ZP_08332871.1| hypothetical protein HMPREF0992_01795 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403187|gb|EGG82747.1| hypothetical protein HMPREF0992_01795 [Lachnospiraceae bacterium 6_1_63FAA] Length = 224 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+KAL+ ++ +L+ N++V G+ +E + +D +ILD+ + I G Sbjct: 1 MRLLLAEDEKALSKALTAILERNNYSVDAVYDGQAALEYLEADNYDGVILDIMMPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R PV +L+ S ++DKV GL +GA+DY++KPF+ +EL+ARIRA+ R Sbjct: 61 TVLKEIRKKGNLIPVLLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAMTRVQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S++ G++++N A + L KE+QMIEL+ ++ E F+ ++ Sbjct: 121 GQTGSILKMGNVALNRAAFELSTSKGSFRLANKEFQMIELMMSNPGVLISAERFMEKIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E+ ++ V+I LRKKL+ A I+ GY L E Sbjct: 181 YDSEAEINVVWVYISYLRKKLA-ALQADIQIKVTRSVGYSLEE 222 >gi|262204089|ref|YP_003275297.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087436|gb|ACY23404.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 220 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 130/224 (58%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+ EDD +A + L++ + V +V D GE + + + E D I+LD+GL + GF Sbjct: 3 RILIAEDDVQIASFVGKGLRAAGYTVEHVAD-GETALLMGRSPEIDMILLDIGLPAMDGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +STPV +L+ S+ D V GL+ GA+DY++KPF EL+AR+R + Sbjct: 62 SVLQQLRGEGVSTPVVVLTARDSVTDTVAGLEGGANDYMTKPFQFAELLARVRLRLHHDA 121 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A ++ + TGDL ++L ++ V+V I LT +E+ ++E+ + L++E L H+ Sbjct: 122 PAAGSETSLATGDLRLDLRSRRVQVGSDTIDLTAREFALLEVFLRHPDQVLSREQILGHV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P ++DV++ LR K+ G +ETV G GY LR Sbjct: 182 WGYDFDPASNVVDVYVRALRTKI-----GAQRLETVRGMGYRLR 220 >gi|74197595|emb|CAJ29527.1| two-component system response regulator [uncultured Aeromonas sp.] Length = 229 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L + L+S + V G + + K EF A+ILDL L DI G Sbjct: 1 MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR + PV IL+ +++D+V GL +G+DDY+ KPF +EL AR+RA+VRRS+ Sbjct: 61 SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+++ +L + +++ V +G + LT EY++++ L + L+K+ LY Sbjct: 121 GQAQAVLEYEELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E ++V I LRKK + + I + G GY++ + Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYS-----DLIRNIRGVGYIIPQ 218 >gi|28898508|ref|NP_798113.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153836151|ref|ZP_01988818.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ3810] gi|260365049|ref|ZP_05777620.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|260879555|ref|ZP_05891910.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|260894970|ref|ZP_05903466.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|260901020|ref|ZP_05909415.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|28806726|dbj|BAC59997.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149750426|gb|EDM61171.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ3810] gi|308086020|gb|EFO35715.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|308093370|gb|EFO43065.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|308110777|gb|EFO48317.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|308111621|gb|EFO49161.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] Length = 218 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDDK L S+ L + V + G K F A+ILDL L DI G Sbjct: 1 MRLLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGSGVTSALKTEAFTAVILDLTLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R PV IL+ I D+V+GL GADDY+ KPF EEL+AR+R ++RR Sbjct: 61 EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ +I G LS++L +++ + LT E++++ L +KE L+ Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKK N A I+ + G GY+L Sbjct: 181 WDEGSSDNAIEVHIHNLRKKAPNVA-----IKNIRGVGYIL 216 >gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 224 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 124/224 (55%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED++ L + L +E+++V GE ++ E+D +ILD+ + G Sbjct: 1 MRILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R PV +L+ S+ED+VRGL +GA+DY+ KPF EEL+ARIR ++RR Sbjct: 61 SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S G L V++D V G I L+GKE+ ++ + K L++E HL++ Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +IDV+I LRKK+ + K I TV G GYVL+E Sbjct: 181 YDYAGGSNVIDVYIRYLRKKIDESFKEK-LIHTVRGAGYVLKEK 223 >gi|317056172|ref|YP_004104639.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448441|gb|ADU22005.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 129/221 (58%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+K L++++ +LK N++V G D + E+D I+LD+ + + G Sbjct: 1 MRLLLAEDEKELSNALVAVLKHNNYSVDAVYNGLDAYDYIIGAEYDGIVLDIMMPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R I TPV +L+ + +ED++ GL +GADDY++KPF EL+ARIRA+ RR Sbjct: 61 TVLERIREKGIQTPVLLLTAKAQVEDRIAGLDTGADDYLTKPFAMGELLARIRAMTRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + G+++++ + + + L KE+Q++E+L L +N ++ E + ++ Sbjct: 121 EFSPNTLKVGNVTLDRERFVISTKNGETKLGNKEFQVLEMLMLNRNILISTERLMEKIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E+ ++ V+I +RKKLS A G I+ G GY L Sbjct: 181 FDAEAEISVVWVYISYIRKKLS-AVGADVEIKASRGVGYTL 220 >gi|192361100|ref|YP_001980663.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] gi|190687265|gb|ACE84943.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] Length = 221 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 124/222 (55%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ ALA + LK + + G D + +D ++LDLGL G Sbjct: 1 MRLLLVEDNVALADELNRDLKRLGYALDWLADGRDALHQGLIEPYDLVLLDLGLPGTSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR R + TPV IL+ +++ GL++GADDY++KPF+ EEL RI+A++RR+ Sbjct: 61 DVLRHWRAQGLHTPVLILTARDKWSERIDGLKAGADDYLTKPFHPEELQLRIQALLRRAH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q + L ++ + + +G + LT E+ ++ L L L+K +HLY Sbjct: 121 GFANQPQLQAAGLVLDEARQMAQYRGETVTLTAAEFSLLRYLMLHPERILSKSQLYDHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +G E + +I+V I LR+KL GK+ IET G+GY L Sbjct: 181 NGEAERDSNVIEVHINHLRRKL-----GKDIIETRRGQGYRL 217 >gi|167839173|ref|ZP_02465950.1| DNA-binding response regulator TctD [Burkholderia thailandensis MSMB43] Length = 223 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L S F V GE + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+VRGL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + G L+ + ++ + + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL G I T+ G GY+L Sbjct: 181 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 218 >gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 237 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K LA +EL L+ E + V + G ++ +FDAI+LDL L D+ G E Sbjct: 3 KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R +K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR Sbjct: 63 IARRVRQSK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ Q ++ DL++ + V G + LT +EY ++ L KN + + Sbjct: 122 EKDASKNKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + LN ++ E +++V++ LR K+ + G +YI+TV G GY++R+ Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DIPGQPSYIKTVRGTGYMVRD 232 >gi|260587759|ref|ZP_05853672.1| DNA-binding response regulator DltR [Blautia hansenii DSM 20583] gi|260542024|gb|EEX22593.1| DNA-binding response regulator DltR [Blautia hansenii DSM 20583] Length = 224 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+KAL+ ++ +L+ N++V G+ +E + +D +ILD+ + I G Sbjct: 1 MRLLLAEDEKALSKALTAILERNNYSVDAVYDGQAALEYLEADNYDGVILDIMMPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R PV +L+ S ++DKV GL +GA+DY++KPF+ +EL+ARIRA+ R Sbjct: 61 TVLKEIRKKGNLIPVLLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAMTRVQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S++ G++++N A + L KE+QMIEL+ ++ E F+ ++ Sbjct: 121 GQTGSILKMGNVTLNRAAFELSTSKGSFRLANKEFQMIELMMSNPGVLISAERFMEKIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E+ ++ V+I LRKKL+ A I+ GY L E Sbjct: 181 YDSEAEINVVWVYISYLRKKLA-ALQADIQIKVTRSVGYSLEE 222 >gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 226 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC 29799] gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC 29799] Length = 226 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 133/224 (59%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ LA +EL L+ E + V G +G+E FD ++LD+ L + G E Sbjct: 3 KILLVEDEEKLARVVELELRYEGYEVEKAFDGREGLEKALSGGFDLVLLDIMLPSMSGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV +++ ++ DKV GL SGADDYI+KPF EEL+ARIRA +R+ Sbjct: 63 VLRRLR-RESQVPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALRKRPV 121 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S ++T G L+++ + V V+G + LT +E+ ++ L K +++E L++++ Sbjct: 122 RQESAVLTAGPLTMDPERHEVTVKGTPVELTRREFDLLRYLLENKEKVISRESLLDNVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +DV+I LR K+ A G K I TV G GYV+RE Sbjct: 182 FDFVGETNAVDVYIRFLRAKIDEAFGIK-LIHTVRGVGYVIREE 224 >gi|326390090|ref|ZP_08211652.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325993955|gb|EGD52385.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 229 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 129/223 (57%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A +++ L + + + GE + L + F I+LD+ L DI GFE Sbjct: 3 KILVIEDDVNIAKFVKINL-DKYYETEIVHEGEKTLYLLERERFSVIVLDIMLPDISGFE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L+ +R K++TPV IL+ S DK+ GL+ GADDYI+KPFN ELVAR+RA++RR Sbjct: 62 LLKKIRAMKVNTPVIILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRRVYE 121 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +L+ ++ ++L V+G + LT +E+Q++++L + + +E + Sbjct: 122 FNASSKSINLLEYDEIKLDLIQNKAFVRGKEVFLTPREFQILKMLMTNRKKVVKREELIA 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV I +LR+K+ YI T WG GY Sbjct: 182 SIWGDSFIEDTKTLDVHIRRLREKIEVNPDQPKYIHTQWGVGY 224 >gi|291086647|ref|ZP_06356333.2| QseB [Citrobacter youngae ATCC 29220] gi|291067320|gb|EFE05429.1| QseB [Citrobacter youngae ATCC 29220] Length = 234 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD L + L ++E + + + + ++LDLGL D G Sbjct: 13 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLESGHYSLVVLDLGLPDEDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R K + PV IL+ +++D+V GL GADDY+ KPF EEL ARIRA++RR Sbjct: 73 HFLNRIRQKKYTVPVLILTARDTVKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHN 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S ++ +L++N+ + V + G I LT KEY ++ L L+ + + +E+ N +Y Sbjct: 133 NQGESELIVSNLTLNIGRRQVWMDGQEIILTPKEYALLSRLMLKAGSPVHREILYNDIYS 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 193 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 228 >gi|270292922|ref|ZP_06199133.1| DNA-binding response regulator CiaR [Streptococcus sp. M143] gi|306829328|ref|ZP_07462518.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|270278901|gb|EFA24747.1| DNA-binding response regulator CiaR [Streptococcus sp. M143] gi|304428414|gb|EFM31504.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 224 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 134/223 (60%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I+TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD+ VNL V+V+ + L GKE++++ +N L K + L+ Sbjct: 121 KFNENTLTYGDVVVNLSTNEVKVEDTPVELLGKEFELLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL A +N ++T+ GY+L++ Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTAFAEN-LQTLRSVGYILKD 222 >gi|13476586|ref|NP_108156.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14027348|dbj|BAB53617.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 223 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ LA + L+ N+ V + GED + +ILDL L + G Sbjct: 1 MRLLLVEDNRELADWLGKTLRQANYVVDIVHDGEDVEHALAAGDHALVILDLALPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR PV +L+ +S++ +V+GL GADDY++KPF EEL ARIRA +RR+ Sbjct: 61 EVLRTLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRRAN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL + + + + G + LT +E+ ++E L ++ T++K +YD Sbjct: 121 DRTAPVVACGDLVFDTNTRLFSLAGEPLALTPREHAVLEQLMVKAGRTVSKAALSAAIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++++ ++RKKL G + I T+ G GY+LR Sbjct: 181 FETDADPSAIEIYVHRVRKKLE---GSRVQIATLRGLGYLLR 219 >gi|292558419|gb|ADE31420.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis GZ1] Length = 242 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 132/222 (59%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++S+ L + V D GE+GI + +D I+LDL L + GF Sbjct: 21 IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GEEGIYEAETGVYDLILLDLMLPEKDGF 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I + S+EDK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 80 QVLKELREKGVTTPVLITTAKESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 139 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++V+L + V G + L GKE+ ++ +N L K + ++ Sbjct: 140 KFNENTLTYGDVTVDLSTNSTTVNGEEVELLGKEFDLLVYFLQNQNVILPKTQIFDRIWG 199 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ K+RKKL G+N ++T+ GY+L+ Sbjct: 200 FDSDTTISVVEVYVSKIRKKLKGTTFGEN-LQTLRSVGYILK 240 >gi|164686903|ref|ZP_02210931.1| hypothetical protein CLOBAR_00499 [Clostridium bartlettii DSM 16795] gi|164604293|gb|EDQ97758.1| hypothetical protein CLOBAR_00499 [Clostridium bartlettii DSM 16795] Length = 224 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD+ L + LK + +N E+G +L + E D ++LD+GL D G ++ Sbjct: 4 ILIIEDDRMLNKGVAFALKKDGYNTMCAYTKEEGKKLIQQNEVDFLLLDIGLPDGSGLDL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ KI P+ + + ED ++G +SG DDYISKPF+ E L +I AI++RS H Sbjct: 64 CNEIK-EKIDFPIVFFTANDTEEDMIKGFESGCDDYISKPFSIEVLKFKINAILKRSDIH 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD-G 181 ++ L V DL ++ DAK V + I L+ EY+++E+L K +TKE+ L+ L+D Sbjct: 123 SKKLFVYKDLKIDFDAKRVYKRNEEIRLSATEYKLLEILCKNKGRAMTKEILLDKLWDYN 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + V I ++RKK+ + + YI T++G GY E Sbjct: 183 GNYVDDNTLSVNIRRIRKKIEDDSKNPEYIITLFGIGYTFGE 224 >gi|228940282|ref|ZP_04102853.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973198|ref|ZP_04133787.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786394|gb|EEM34384.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819408|gb|EEM65462.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 236 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TP+ +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233 >gi|229128485|ref|ZP_04257464.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228654988|gb|EEL10847.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 236 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR+ Sbjct: 73 HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRTT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 193 YDYDGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233 >gi|264680754|ref|YP_003280664.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299529368|ref|ZP_07042806.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|262211270|gb|ACY35368.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298722617|gb|EFI63536.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 231 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 15/233 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ +A + L + V V + FDA++LDLGL D G Sbjct: 1 MRILVVEDNEGIAAGLRTNLMQRGYAVDVCASVAEAWHALSAERFDAVLLDLGLPDGDGS 60 Query: 61 EVLRALRV----------AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110 EV+R LR+ +TPV IL+ ++D+V GL GADDY+ KPF+ +EL A Sbjct: 61 EVVRRLRLQTGRPGVPQLPDPATPVLILTARDQVQDRVAGLNLGADDYLVKPFDMDELEA 120 Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R+RA++RR+ G A +I DL V+ A+T+ G ++ ++ +E+ ++ L L + L+ Sbjct: 121 RLRAMMRRAAGQASPVIRHADLEVDPAARTIRQAGQKVEVSPREFAVLWALLLARGRVLS 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + HLY D E ++V++ LRKKL G+ I T+ G GY + + Sbjct: 181 RPQIEEHLYSWGDTVESNAVEVYVHHLRKKL-----GQKIIVTMRGVGYFMPQ 228 >gi|331266563|ref|YP_004326193.1| DNA-binding response regulator CiaR [Streptococcus oralis Uo5] gi|326683235|emb|CBZ00853.1| DNA-binding response regulator CiaR [Streptococcus oralis Uo5] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 136/224 (60%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 ++ILL+EDD L++S+ L +NF +V GE+G+ + +D I+LDL L + G Sbjct: 2 IKILLVEDDLGLSNSVFDFL--DNFADVMQVFDGEEGLYEAESGVYDLILLDLMLPEKNG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F+VL+ LR I+TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 60 FQVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + GD+ VNL V+V+ + L GKE++++ +N L K + L+ Sbjct: 120 GKFNENTLTYGDVIVNLSTNEVKVEDTPVELLGKEFELLVYFLQNQNVILPKTQIFDRLW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL A +N ++T+ GY+L++ Sbjct: 180 GFDSDTTISVVEVYVSKVRKKLKGTAFAEN-LQTLRSVGYILKD 222 >gi|311105062|ref|YP_003977915.1| transcriptional regulator TctD 3 [Achromobacter xylosoxidans A8] gi|310759751|gb|ADP15200.1| transcriptional regulatory protein TctD 3 [Achromobacter xylosoxidans A8] Length = 229 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 12/238 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL+ EDD LA + +S N Y D DG+ FD +ILDLGL + Sbjct: 1 MRILIAEDDSILADGLS---RSLRHNGYAVDAVRDGLAADSALAAQAFDLLILDLGLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR LR + PV IL+ SIE +V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 AGLEVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G ++I G L + + V + L+ +E ++E+L R ++K ++H Sbjct: 118 RGAGGGATMIKHGRLLFDQTGRVAMVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 L + +E I+V++ +LRKKL +G K I TV G GY L +D+ YL + Sbjct: 178 LCEWGEEVSTNAIEVYVHRLRKKL-EPSGVK--IVTVRGLGYCLE---RDQGAAYLAS 229 >gi|237654631|ref|YP_002890945.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|237625878|gb|ACR02568.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 226 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + G DG+ L ++D I+LD+ L + G+ Sbjct: 1 MKILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALNGDYDLIVLDVMLPSLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR TPV L+ IED+VRGL+ GADDY+ KPF EL+AR+R ++RR R Sbjct: 61 GILQTLRRGGRETPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + + +L ++L + V G RI LT KE+ ++ELL RK L + + + ++D Sbjct: 121 NHEPETLRSANLELDLLRRRVNRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+V + +LR K+ + K I TV G GYVL Sbjct: 181 MNFDSDTNVIEVAVRRLRVKVDDPFEPK-LIHTVRGMGYVL 220 >gi|326940923|gb|AEA16819.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TP+ +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221 >gi|47564364|ref|ZP_00235409.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558516|gb|EAL16839.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 HVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCKMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221 >gi|167579535|ref|ZP_02372409.1| two component transcriptional regulator, winged helix family protein [Burkholderia thailandensis TXDOH] Length = 232 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL I+DD+ +A SI L + + V V G +G+ ++DA+ LD L D+ G + Sbjct: 12 ILTIDDDELIADSIVQTLGAAGYAVDVARTGREGMAKVMAGDYDAVTLDRKLPDLDGLTI 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L +R + TPV ++S +S ++ +V GL++G DDY++KPF+ EL ARI A++RR H Sbjct: 72 LATMRGVGMETPVLVMSALSDVDHRVEGLRAGGDDYLAKPFSLVELSARIDALMRRRPRH 131 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 AQ+++ G L ++L + V + H + L E++++E + LT+ M ++ Sbjct: 132 AKAQAVLRAGPLELDLIRRKVRHRAHELDLLPTEFRVLEFMMRHAGRVLTRTMIFEAVWG 191 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R +P +IDV + +LRKK+ N G + I T+ G GY+L Sbjct: 192 CRFDPGTNLIDVHVGRLRKKV-NVPGEQPMIRTIRGSGYLL 231 >gi|320107596|ref|YP_004183186.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319926117|gb|ADV83192.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 243 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 132/220 (60%), Gaps = 6/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLI+DD++LA I F+++ GE+GI + K + F IILD+ L I GF+V Sbjct: 15 LLLIDDDQSLASLIAEYCAEAGFSIFSALSGEEGIRVAKQHSFQMIILDVMLPGIDGFDV 74 Query: 63 LRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + ST PV +L+ + D+VRGL GADDY++KPF EELVARI+ I+RRS Sbjct: 75 LQRLR--QFSTVPVLMLTTRGAAMDRVRGLDGGADDYLAKPFQPEELVARIKTILRRSSP 132 Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S V GDL ++ A++V+ +G + LTG E+ +++LL + + +E + ++ Sbjct: 133 KEMCSKYVVGDLEIDEVARSVKRKGIVLELTGAEFHLLKLLLSQPGEPMPREELIPRIF- 191 Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 GR+ + + ID + LRKKL A GK I+++ GY Sbjct: 192 GREPGSLDRSIDNLVNNLRKKLGEHAEGKERIKSIRNVGY 231 >gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 226 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVAGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|225024963|ref|ZP_03714155.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC 23834] gi|224942294|gb|EEG23503.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC 23834] Length = 221 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD +A ++ LK + V + G + +D I+LDLGL G Sbjct: 1 MRILLIEDDTMIADAVAGSLKDSGYAVDWINNGRTAVTAFGSQSYDLILLDLGLPGQDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + +TPV IL+ + ++ GL GADDY+ KPF+ EL ARIRA++RR Sbjct: 61 DVLQQLRGSGNTTPVLILTARDDLHSRLSGLDGGADDYLIKPFDMAELQARIRAVLRRQH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A L+ G L++N A VE+ G + L+ KE+ ++E L R T L++ + + Sbjct: 121 QRANPLLGNGSLTLNPAAHQVEIVGQSEPVALSNKEFAILEALLQRPGTILSRSSLEDKI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y +E E ID I LRKK+ GK +I+ + G G+++ Sbjct: 181 YGWGEEVESNAIDYLIHALRKKI-----GKEHIKNIRGVGWMV 218 >gi|88798651|ref|ZP_01114235.1| Two component Transcriptional regulator, Winged helix family protein [Reinekea sp. MED297] gi|88778751|gb|EAR09942.1| Two component Transcriptional regulator, Winged helix family protein [Reinekea sp. MED297] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ LA I L + G+D + ++D IILD L + G Sbjct: 1 MKILVVEDDRTLADYIVRGLTEAGYRADSCTDGKDALYRAAAEDYDLIILDRMLPSVDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR + + PV ILS +S ++ +V GL +GADDY++KPF EL+AR++ ++RR Sbjct: 61 TILRTLRASNKTLPVLILSALSDVDQRVEGLSAGADDYLTKPFAFAELLARVQVLLRRPG 120 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ +++ TG + ++L + V VQG I +E++++E L +++ M L ++ Sbjct: 121 ADSRQSTVLETGAIRLDLSRQKVWVQGREIAFQPREFRLLEYLMRHAGQVVSRTMLLENV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D +P+ ++DV I +LR+KL + + I TV G GYV Sbjct: 181 WDYHFDPQTNVVDVHISRLRQKLDHGQ-ETSVIRTVRGAGYVF 222 >gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 247 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + V G I + ++ DA++LD+ L D+ GF Sbjct: 21 VRVLVVDDEPTLTDLLSMALRYEGWQVRTAGDGMGAIRAARQFQPDAVVLDVMLPDLDGF 80 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVLR LR + PV L+ ++E++V GL G DDY++KPF+ EE++AR+RA++RRS Sbjct: 81 EVLRKLREDDATVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSG 140 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ GDL++N ++ V G I LT E++++ L L+K L+ Sbjct: 141 FAVTARQDAVLTVGDLTLNEESHEVRRSGQLITLTATEFELLRYLMRNPRRVLSKAQILD 200 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ AG + I T+ G GY+L+ Sbjct: 201 RVWNYDFGGQANVVELYISYLRKKID--AGRQPMIHTLRGAGYLLK 244 >gi|159029102|emb|CAO90091.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD LA I L E + V + G DG+++ + D +ILD L I G ++ Sbjct: 5 ILLVEDDPKLAEFIATELHLEGYQVTIASNGMDGLKIARDSSPDLLILDWMLPVISGLDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR + P+ IL+ I D+V GL +GADDY++KPF+ EEL+AR++A +RR+ Sbjct: 65 CLRLRKTGMEAPIIILTAKDEIPDRVTGLNAGADDYVTKPFSMEELLARVKARLRRTHAQ 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ DL++N A+ V I LT KE+ ++E + LT+E L ++ Sbjct: 125 DLNIFTFEDLTLNCLAREVYRDSQLIELTAKEFDLLEFILRHPRQVLTREQILETVWGYD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + II+V+I LR KL +A K I+TV G GYVLR+ A Sbjct: 185 FMGDSNIIEVYIRALRVKLE-SANPKRLIQTVRGVGYVLRDYA 226 >gi|37675773|ref|NP_936169.1| DNA-binding response regulator [Vibrio vulnificus YJ016] gi|37200312|dbj|BAC96139.1| DNA-binding response regulator [Vibrio vulnificus YJ016] Length = 218 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L S+ L + V + G K +F A+ILDL L DI G Sbjct: 1 MRLLLIEDDTLLGQSMVTSLSRHGYTVDWLEKGSGVTSALKTEDFTAVILDLTLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R A + PV IL+ I+D+V+GL GADDY+ KPF EEL+AR+R ++RR Sbjct: 61 DVLRNIRSAGFNLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G+L+++L +++ Q + LT E++++ L ++K+ L+ Sbjct: 121 GSATEVIEVGELNLSLSDQSIRYQEAVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D I+V I LRKK N I+ + G GY++ Sbjct: 181 WDDSASDNAIEVHIHNLRKKAPNVP-----IKNIRGVGYII 216 >gi|312115807|ref|YP_004013403.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220936|gb|ADP72304.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 226 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 6/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ A + L F + GE + +FD +I+D L + G Sbjct: 1 MRVLIVEDDRTAADFLAKALGEAGFQTEIAGDGEAAFDSATSSKFDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR +TPV ILS + +++D+V+GL+SG DDY+ KP++ ELVAR+ A+ R R Sbjct: 61 TLVERLRERGDTTPVLILSALGAVDDRVKGLRSGGDDYLPKPYSLVELVARVEALTR--R 118 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + + T GDL ++ + V G I L +EY+++E L +T+ M L + Sbjct: 119 GPTERAVTTYAVGDLVLDRLSHKVSRGGETIVLQPREYRLLEYLMKHAGQVVTRTMLLEN 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D +P+ +IDV I +LR K+ GK +ETV G GY++R+ + Sbjct: 179 VWDYHFDPQTNVIDVHISRLRSKIDKGQ-GKPLLETVRGAGYMIRDERR 226 >gi|121602270|ref|YP_988746.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583] gi|120614447|gb|ABM45048.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583] Length = 221 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 15/224 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL++EDD+ L H + +++ YV+D DG E L +DA+ILD+GL + Sbjct: 1 MRILIVEDDRDLNHQLAETVRNAG---YVSDSAFDGEEAYFLGSTESYDAVILDIGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G V+ R P+ IL+ DKV G+ +GADDY+ KPF EE++AR+RA++R Sbjct: 58 DGIRVVEKWRQDGHLMPILILTARDRWSDKVLGIDAGADDYVVKPFYLEEVMARLRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R+ GHA S + G +V LD KT V V G I LT E++++ L + +++ + Sbjct: 118 RASGHATSALSCG--AVLLDTKTSRVFVDGQLIKLTSHEFRLLSYLMHHCDKVVSRTELI 175 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 HLYD + + I+VF+ +LRKKL G ++IET+ G GY Sbjct: 176 EHLYDQDFDRDSNTIEVFVRRLRKKL-----GVDFIETIRGMGY 214 >gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 229 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 135/220 (61%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D++++ + ++++L+ E + V + G+D IE+ K D IILD+ L D GF+ Sbjct: 3 KILVCDDERSILNMLKMVLEKEKYEVICAENGKDVIEVLKKQIPDLIILDVMLPDESGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L+ + V P+ +L+ + I DKV GL+ GADDY++KPF+ EL+AR++A++RR Sbjct: 63 ILKKI-VPLYKVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLRRIEE 121 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ GDL VN D V+ +G I+LT KE+ ++++L K LT+E L+ ++ Sbjct: 122 VKANKNFCTFGDLIVNFDQGIVKKRGKIINLTPKEFVLLKVLIDAKGNVLTREELLDKVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++D+ I +LRKK+ + YI TV+G GY Sbjct: 182 GYDYYGDTRVVDIHILRLRKKIEDDTQSPRYIRTVYGFGY 221 >gi|330821031|ref|YP_004349893.1| two component transcriptional regulator [Burkholderia gladioli BSR3] gi|327373026|gb|AEA64381.1| two component transcriptional regulator [Burkholderia gladioli BSR3] Length = 219 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MR+LL+EDD + +E+ L+ + V D DGI + ++LDLGL Sbjct: 1 MRLLLVEDDDLIGSGLEISLRQAGYEV---DWLRDGIAAQAALATAGYALVVLDLGLPGK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +LR LR + PV +++ ++ D+VRGL GADDY++KPF+ E++AR RA+VR Sbjct: 58 SGSALLRMLRARGDTIPVLVITARGTVADRVRGLDEGADDYLAKPFDLSEVLARCRALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G + V GD++++L ++ + RI LT +E+ ++ L ++ ++ + Sbjct: 118 RSQGRTRDAFVRGDIAIDLTSRVITRNASRIALTAREWAILIQLVGQRGVPQSRARLEDA 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY +D E I+V + LRKKL G ++I TV G GYV+ Sbjct: 178 LYGWQDGVESNAIEVHVSNLRKKL-----GADFIRTVRGIGYVV 216 >gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 135/234 (57%), Gaps = 8/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++++ ++ L+ F V G+ ++ FD I+LDL L ++ G EV Sbjct: 5 ILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNESFDFIVLDLMLPEMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR KI TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR+RAI+RR++ Sbjct: 65 CKQLRQNKIMTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRTKAA 124 Query: 123 AQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +S IV GD+ + D V ++G+++ LT KE++++ L+ K +T++ Sbjct: 125 KRSEKDDNEKEKIVIGDVEIYSDNYEVFLKGNQLELTPKEFELLLYLANHKGRVMTRDQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 LN +++ + +I+DV I LR+K+ YI+T+ G GY L KDE Sbjct: 185 LNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEVPLKDE 238 >gi|152973508|ref|YP_001338559.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|329999903|ref|ZP_08303567.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] gi|150958300|gb|ABR80329.1| probable transcriptional regulatory protein(silver resistance) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328538154|gb|EGF64312.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] Length = 227 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 2 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 62 DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S + DLSV+L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N G K I+TV G GY+L Sbjct: 182 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYML 222 >gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 219 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA S+ L L +E + V + G +G+ +D I+LD+ L + G+ Sbjct: 1 MRLLIVEDERRLARSLALGLGAEGYAVDIAHDGTEGLRRATEGGYDLIVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A TP+ +L+ D+ GL +GADDY++KPF+ L AR++A++RR Sbjct: 61 RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G L ++ A+ V + G I LT KEY ++E L LR ++K L H++D Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++V++ LR+KL G I TV G GY+L Sbjct: 181 FAYSGDPNIVEVYVSTLRRKL-----GAGLIRTVRGAGYLL 216 >gi|229018448|ref|ZP_04175310.1| Two-component response regulator [Bacillus cereus AH1273] gi|229024704|ref|ZP_04181143.1| Two-component response regulator [Bacillus cereus AH1272] gi|228736547|gb|EEL87103.1| Two-component response regulator [Bacillus cereus AH1272] gi|228742800|gb|EEL92938.1| Two-component response regulator [Bacillus cereus AH1273] Length = 226 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E ++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEEDLQNILVKRLNAEYYSVDGCGNGEDALDYISMTTYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQRLRADNNTTPVLLLTAKDAIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223 >gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 227 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59 IL++ED+K +A IEL L++E Y T++ DGI L +F E + ++LDL L + G Sbjct: 9 ILIVEDEKDIARFIELELQAEG---YRTEVAYDGITGLSRFRETNPNLVVLDLMLPVMDG 65 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R + P+ IL+ +EDKV GL +GADDY+ KPF+ EEL+ARIRA +RR Sbjct: 66 IEVARRIRKTS-NVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRV 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL +NL+ + V G RI L+ KE++++ELL+ ++ ++ Sbjct: 125 TPAITGEIRVADLIINLEGREVYRSGRRIELSNKEFELLELLAKSPGKVFSRFEIEEKVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G + ++DV+I LRKKL G + I TV G GYVLRE+ Sbjct: 185 PGY-QGGSNVVDVYIGYLRKKL-EGIGERRLIHTVRGVGYVLRED 227 >gi|224368969|ref|YP_002603133.1| two component transcriptional regulator (Winged helix family protein) [Desulfobacterium autotrophicum HRM2] gi|223691686|gb|ACN14969.1| two component transcriptional regulator (Winged helix family protein) [Desulfobacterium autotrophicum HRM2] Length = 228 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A + L + F V G+DG+ + F E D I++D+ L + G Sbjct: 1 MRLLLVEDDVKIADFVIKGLSAAGFAVDHAVNGQDGLHMACFEENDLIVVDVMLPCLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR +TPV +LS ++D+VRGL++GADDY++KPF EL+ARI+A++RR+ Sbjct: 61 SLIKTLRARGFNTPVIVLSARDRVDDRVRGLEAGADDYLTKPFAFSELLARIQALIRRAG 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ G+L ++L + V G + L E+ ++E L + ++K M + H++ Sbjct: 121 GVVDPTTLSYGELVMDLMKREVRRDGRVVELQPLEFSLLEYLMRNQERVVSKTMIMEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P +++ +C+LR K+ K I TV G GYVL Sbjct: 181 NYNFDPMTNVVEARVCRLRDKIDKGFHPK-LIHTVRGAGYVL 221 >gi|317472867|ref|ZP_07932175.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316899667|gb|EFV21673.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L ++ L E++ G D ++ ++D IILD+ L + G Sbjct: 1 MRLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R TPV L+ IED+V+GL GADDY+ KPF+ EEL+AR+R ++RR Sbjct: 61 ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL ++ ++K V +I L+ KE+ ++E + +N L++E H ++ Sbjct: 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++DV+I LRKK+ G K I TV G GYVLR+ Sbjct: 181 YDFEGGSNVVDVYIRYLRKKIDEGFGCK-LIHTVRGVGYVLRK 222 >gi|169826322|ref|YP_001696480.1| two-component response regulator YcbL [Lysinibacillus sphaericus C3-41] gi|168990810|gb|ACA38350.1| two-component response regulator YcbL [Lysinibacillus sphaericus C3-41] Length = 232 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD+A+ + L E F+V + GE+ ++ C FD +ILD+ + + G EV Sbjct: 7 ILLVEDDEAIRDMVANFLLLEGFDVTTANNGEEALQYCLNQTFDLVILDIMIPKLNGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+ +R + + P+ I+S S DK GL GADDYI+KPF+ E AR++A++RR+ Sbjct: 67 LKVIR-EQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATKY 125 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H Q ++V G L +++ ++ G + LT KE+ +++L +N TKE Sbjct: 126 AGQTDHKQDVVVIGPLKIDIVNFSINKNGLEVKLTSKEFAILKLFVTNRNRVFTKEQIYQ 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + II+V I +LR+K+ + YI+T+WG GY Sbjct: 186 LIWKDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGY 228 >gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus LMG 18311] gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus CNRZ1066] Length = 229 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ LA + L L+ E ++V D G +G+E+ +FD I+LDL L ++ GFE Sbjct: 4 RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K T + +++ SI D V GL GADDYI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQQEK-DTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ DL +++ + V I LT +E+ ++ L N +T+E L Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228 >gi|26250928|ref|NP_756968.1| DNA-binding transcriptional regulator BasR [Escherichia coli CFT073] gi|91213660|ref|YP_543646.1| DNA-binding transcriptional regulator BasR [Escherichia coli UTI89] gi|117626400|ref|YP_859723.1| DNA-binding transcriptional regulator BasR [Escherichia coli APEC O1] gi|170769529|ref|ZP_02903982.1| DNA-binding response regulator BasR [Escherichia albertii TW07627] gi|215489463|ref|YP_002331894.1| DNA-binding transcriptional regulator BasR [Escherichia coli O127:H6 str. E2348/69] gi|218561202|ref|YP_002394115.1| DNA-binding transcriptional regulator BasR [Escherichia coli S88] gi|218692409|ref|YP_002400621.1| DNA-binding transcriptional regulator BasR [Escherichia coli ED1a] gi|227886849|ref|ZP_04004654.1| DNA-binding transcriptional regulator BasR [Escherichia coli 83972] gi|237703701|ref|ZP_04534182.1| transcriptional regulatory protein basR/PmrA [Escherichia sp. 3_2_53FAA] gi|300988429|ref|ZP_07178667.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301047669|ref|ZP_07194731.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|306815753|ref|ZP_07449902.1| DNA-binding transcriptional regulator BasR [Escherichia coli NC101] gi|312965731|ref|ZP_07779960.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 2362-75] gi|331660690|ref|ZP_08361622.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA206] gi|26111360|gb|AAN83542.1|AE016771_53 Transcriptional Regulatory protein basR/pmrA [Escherichia coli CFT073] gi|56540613|gb|AAV92760.1| PmrA [Escherichia coli] gi|56540615|gb|AAV92761.1| PmrA [Escherichia coli] gi|56540617|gb|AAV92762.1| PmrA [Escherichia coli] gi|56540619|gb|AAV92763.1| PmrA [Escherichia coli] gi|56540621|gb|AAV92764.1| PmrA [Escherichia coli] gi|56540623|gb|AAV92765.1| PmrA [Escherichia coli] gi|56540625|gb|AAV92766.1| PmrA [Escherichia coli] gi|56540627|gb|AAV92767.1| PmrA [Escherichia coli] gi|56540629|gb|AAV92768.1| PmrA [Escherichia coli] gi|56540631|gb|AAV92769.1| PmrA [Escherichia coli] gi|56540633|gb|AAV92770.1| PmrA [Escherichia coli] gi|56540635|gb|AAV92771.1| PmrA [Escherichia coli] gi|56540637|gb|AAV92772.1| PmrA [Escherichia coli] gi|91075234|gb|ABE10115.1| transcriptional regulatory protein basR/PmrA [Escherichia coli UTI89] gi|115515524|gb|ABJ03599.1| BasR, DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli APEC O1] gi|170121586|gb|EDS90517.1| DNA-binding response regulator BasR [Escherichia albertii TW07627] gi|215267535|emb|CAS11989.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli O127:H6 str. E2348/69] gi|218367971|emb|CAR05771.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli S88] gi|218429973|emb|CAR10806.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli ED1a] gi|222035841|emb|CAP78586.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli LF82] gi|226901613|gb|EEH87872.1| transcriptional regulatory protein basR/PmrA [Escherichia sp. 3_2_53FAA] gi|227836191|gb|EEJ46657.1| DNA-binding transcriptional regulator BasR [Escherichia coli 83972] gi|294491023|gb|ADE89779.1| DNA-binding response regulator BasR [Escherichia coli IHE3034] gi|300300415|gb|EFJ56800.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300407427|gb|EFJ90965.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|305851415|gb|EFM51870.1| DNA-binding transcriptional regulator BasR [Escherichia coli NC101] gi|307556283|gb|ADN49058.1| transcriptional regulatory protein [Escherichia coli ABU 83972] gi|307629184|gb|ADN73488.1| DNA-binding transcriptional regulator BasR [Escherichia coli UM146] gi|312289705|gb|EFR17596.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 2362-75] gi|312948707|gb|ADR29534.1| DNA-binding transcriptional regulator BasR [Escherichia coli O83:H1 str. NRG 857C] gi|315287932|gb|EFU47334.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315293972|gb|EFU53324.1| response regulator receiver domain protein [Escherichia coli MS 153-1] gi|315296115|gb|EFU55424.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|320193493|gb|EFW68130.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli WV_060327] gi|323190005|gb|EFZ75283.1| transcriptional regulatory protein basR/pmrA [Escherichia coli RN587/1] gi|323950321|gb|EGB46202.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323954400|gb|EGB50184.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|324008691|gb|EGB77910.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|331051732|gb|EGI23771.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA206] Length = 222 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S + G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELNVGNLTLNMGRRQVWMSGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|117918698|ref|YP_867890.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117611030|gb|ABK46484.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 220 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L + L + V + G DG L + F+A+ILDLGL PG Sbjct: 1 MRLLLIEDDTDLVARLIPALNKAGYTVEHANNGIDGAFLGEEETFEAVILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ + ++V GL++GADDY+ KPF+ EEL+AR+ A++RR Sbjct: 61 SVLSQWRQKGLLMPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +L+ +S+++D + V +G I LT EY+++ L ++K +Y Sbjct: 121 GRADNLLQHAGVSLDVDKQAVTNAEGDVIELTKIEYRLLHYLMANPTKIVSKSELSERIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+V+I +LR++L GK+YIET G+GY L++ Sbjct: 181 EEEQIKDSNVIEVYINRLRQRL-----GKDYIETRRGQGYRLKD 219 >gi|91778717|ref|YP_553925.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|91691377|gb|ABE34575.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 225 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 132/221 (59%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A ++ L+ + V V + G G+ L E+D I+LD+ L + G+ Sbjct: 1 MRILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR + +TPV L+ ++D+VRGL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 GVVKTLRTTR-TTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI GDL ++++ + V+ G RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ + K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRTKIDDNFSVK-LIHTVRGVGYVL 219 >gi|256379472|ref|YP_003103132.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255923775|gb|ACU39286.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 223 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL++DD+ L + L +E F V V GE G+ + +D ++LD+ L + G+ Sbjct: 1 MRVLLVDDDRRLVGLLARGLVAEGFAVDVEHDGEAGLWRASEHAYDVVVLDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A + TP+ +L+ D+ GL +GADDY++KPF+ LVAR+RA+ RR Sbjct: 61 RVCARLRDAGVETPILMLTAKDGELDEAEGLDTGADDYLTKPFSYVVLVARLRALARRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL V+ + +G I LT KE+ ++E L+ RK +TK+ L ++D Sbjct: 121 AGRPAAVVAGDLVVDPATRACSRRGTPISLTAKEFAVLEHLARRKGRVVTKDEVLAGVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +++V++ LR+K+ + G I TV G GY L E+ Sbjct: 181 SAREADHNLVEVYVSALRRKI-DLPFGTFTITTVRGVGYRLEES 223 >gi|330809736|ref|YP_004354198.1| two-component system, response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377844|gb|AEA69194.1| Putative two-component system, response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 234 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 134/229 (58%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ + + L + V V G DG+ +++D +ILD+ L G+ Sbjct: 1 MRLLIVEDEEKTSSYVHRGLTELGYIVDVATNGIDGLHYALEWDYDVVILDVMLPGKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR+ K TPV +LS +++D++RGL+ GADDY+ KPF+ ELVAR++A++RR Sbjct: 61 DVLQGLRLQK-KTPVIMLSARGTVDDRIRGLREGADDYLGKPFSFAELVARVQALIRRRA 119 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G L + DL V+L A+ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 GDTVDLTHLRIDDLEVDLQARKVTRGGLRLDLTAKEFSLLSLLARHQGEILSKLMIAEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +D + + +++V I ++R K+ +A + + TV G GYVL D Sbjct: 180 WDMNFDSDANVVEVAIKRVRAKV-DAPYPRKLLHTVRGMGYVLESREVD 227 >gi|228982217|ref|ZP_04142503.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228777504|gb|EEM25785.1| Two-component response regulator [Bacillus thuringiensis Bt407] Length = 226 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TP+ +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223 >gi|116490257|ref|YP_809801.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|118586509|ref|ZP_01543953.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163] gi|290889640|ref|ZP_06552729.1| hypothetical protein AWRIB429_0119 [Oenococcus oeni AWRIB429] gi|116090982|gb|ABJ56136.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] gi|118433073|gb|EAV39795.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163] gi|290480637|gb|EFD89272.1| hypothetical protein AWRIB429_0119 [Oenococcus oeni AWRIB429] Length = 231 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 135/228 (59%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIEDDK L I ML SE V G DG +D I+ DL L ++ G Sbjct: 6 VKILLIEDDKILNDDITAML-SEIAEVKQVFNGADGEYEAVEAPYDLIVSDLMLPEMNGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R A I TPV IL+ S++DKV+G + GADDY++KPF++EEL+AR+ A++RR+ Sbjct: 65 DIIKEMRDAHIETPVLILTAKDSVDDKVKGFEVGADDYLTKPFHREELLARVEALLRRAG 124 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I G+L ++L +TV V + L GKEY ++ L+ KN +TK+ + ++ Sbjct: 125 IDTEEKEINIGNLKIHLSNRTVTVGNQNVQLVGKEYDILVYLAKNKNIIITKDQIFDRVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++++++ LR+KL + G + I+T+ G++L + ++ Sbjct: 185 GLDSDTTTSVVNIYLNNLRRKLE-SVGKNDLIKTLRNVGFILESDEQN 231 >gi|317493676|ref|ZP_07952097.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918619|gb|EFV39957.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 220 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDDK + I+ L F+V G+ G+ +DA++LDL L + G Sbjct: 1 MRVLLIEDDKLIGDGIKAGLIKMGFSVDWFTEGKQGLNALDSAPYDAVVLDLSLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRKWRQNGHDEPVLILTARDALEQRVAGLQQGADDYLCKPFALIEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+ + G +S++ TV +G I+L KE+ ++ELL + L + + +Y+ Sbjct: 121 GQVQTTLTHGPVSLDPINLTVTHEGEAIYLKPKEFALLELLLRNEGRVLPRPLIEEKIYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ I+V I LRKK G ++I TV G GY L E Sbjct: 181 WDDDVSSNAIEVHIHHLRKKF-----GSSFIRTVHGIGYTLGE 218 >gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 237 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 134/232 (57%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K LA +EL L+ E + V + G ++ +FDAI+LDL L D+ G E Sbjct: 3 KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R +K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 63 IARRVRQSK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ DL++ + V G + LT +EY ++ L KN + + Sbjct: 122 EKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + LN ++ E +++V++ LR K+ + G +YI+TV G GY++R+ Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DIPGQPSYIKTVRGTGYMVRD 232 >gi|56540577|gb|AAV92742.1| PmrA [Escherichia coli] Length = 222 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 128/230 (55%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK I TV G G++L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIPTVRGFGFMLVANEEN 222 >gi|292490612|ref|YP_003526051.1| response regulator receiver [Nitrosococcus halophilus Nc4] gi|291579207|gb|ADE13664.1| response regulator receiver [Nitrosococcus halophilus Nc4] Length = 223 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 128/226 (56%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 MR+LL+EDD+ L + L + F V D G D E F E ++A+ILDLGL G Sbjct: 1 MRVLLVEDDRELQKRLHRELTQQGFVVDTADNGVDA-EFLGFEEPYEAVILDLGLPQRSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VLR R PV IL+ + +KV G + GADDY+SKPF+ EEL+AR++A++RRS Sbjct: 60 LDVLRHWRDHDNRVPVLILTARDAWHEKVEGFKCGADDYLSKPFHTEELLARLQALIRRS 119 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + QS + + L+++ + + V GH I LTG E++++ L L+K + Sbjct: 120 QNRPHQSQLTSHSLTLDEERQCVHKDGHLIELTGTEFRLLRYFMLHPGRILSKSRLTEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 Y + + +++V++ +LRKK+ G + I+T G+GY+ E Sbjct: 180 YALDADKDSNVMEVYVNRLRKKV-----GSDLIKTRRGQGYIFGET 220 >gi|126463915|ref|YP_001045028.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221369515|ref|YP_002520611.1| Two component transcriptional regulator, winged helix family precursor [Rhodobacter sphaeroides KD131] gi|332561170|ref|ZP_08415488.1| Two component transcriptional regulator, winged helix family precursor [Rhodobacter sphaeroides WS8N] gi|126105726|gb|ABN78256.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] gi|221162567|gb|ACM03538.1| Two component transcriptional regulator, winged helix family precursor [Rhodobacter sphaeroides KD131] gi|332274968|gb|EGJ20284.1| Two component transcriptional regulator, winged helix family precursor [Rhodobacter sphaeroides WS8N] Length = 220 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++EDD +A + + L S F V GE L +D I+LDLGL + G Sbjct: 1 MRALVVEDDARIAQDLSVALGSAGFRVETAADGETAWFLGGTESYDLIVLDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R + PV +L+ + ++V G+ +GADDY+ KPF EELVAR RA+VRRS Sbjct: 61 AVLKRWRAEGVEIPVLVLTARGTWTERVEGIDAGADDYLPKPFRIEELVARARALVRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L G L+++++ T + G + L E++++ L L ++ + L HLY Sbjct: 121 GRAAPLQSVGRLALDMNRMTATLDGLPLGLAPLEFRLLAYLMLHRDRVVPPTELLEHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E ++ + +LR+K+ G+ I T G GY L Sbjct: 181 DNDAREANALEAVVARLRRKV-----GRGVIGTRRGFGYQL 216 >gi|295815579|gb|ADG36299.1| SilR [Morganella sp. RP-42] Length = 226 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S + DLSV+L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N G K I+TV G GY+L Sbjct: 181 DMSFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYML 221 >gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 129/223 (57%), Gaps = 1/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K++ I LK NF V G + + L KF + D ++LD+ L D+ GF+ Sbjct: 4 RILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEKPDLVLLDIMLPDMDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + + S V +L+ DKVRGL+ GADDYI KPF+ ELVARI+AI+RR+ Sbjct: 64 VCKEISCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAILRRAGK 123 Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S+ I G V+++A+++ + T +E+ ++++ N T++ LN ++ Sbjct: 124 QNSSVEIHIGPFRVDMEAQSIYKNDVLLDFTPREFSLMKVFINNINKAFTRDEILNIVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV I ++R+K+ + YIET+WGRGY+ R+ Sbjct: 184 EDFVGDPKTVDVHIRRIREKIEDDPSNPKYIETLWGRGYLWRK 226 >gi|146341965|ref|YP_001207013.1| putative two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146194771|emb|CAL78796.1| putative Two-component transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 221 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L+ + L++ + V + GE L ++ A++LDLGL + G Sbjct: 1 MRVLLVEDDPRLSSDLSRTLQAAGYLVETSANGEQAWFLGDTEDYGAVVLDLGLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A PV IL+ +S ++V G+ +GADDY+ KPF EEL+AR+RAIVRRS Sbjct: 61 SVLKRWRGAGRHMPVLILTARASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL-NHLY 179 GHA ++ +GDL+++ V + G + L+ EY++I L LR N + + L ++Y Sbjct: 121 GHAAPVLSSGDLALDERQMKVSLSGVPVALSQLEYRLIAYL-LRHNGRVVPQHELEENVY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + ++V I ++RKKL G + IET G GY++ E A+ Sbjct: 180 GLGHDHDSNALEVLIRRVRKKL-----GADIIETRRGFGYMIPETAE 221 >gi|221065616|ref|ZP_03541721.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220710639|gb|EED66007.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 231 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 118/222 (53%), Gaps = 6/222 (2%) Query: 11 ALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70 L HS L N+ V G E CK ++ +ILDLGL D G VLR LR Sbjct: 15 GLVHS----LAQSNYAVDAVHTGHAATEACKTTAYELLILDLGLPDEDGLSVLRRLRRQG 70 Query: 71 ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVT- 129 ++ PV IL+ ++D++ GL +G DDY+ KPF EL ARIRA++RR SL + Sbjct: 71 VAAPVIILTARYDLQDRISGLDAGGDDYLPKPFALGELEARIRALLRRGSSSGASLTLGF 130 Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189 GDL ++ A+ V H + LT +E ++ELL R+ ++K+ + LY + Sbjct: 131 GDLMLDPAARIATVHDHELMLTAREMAVLELLLRRQGRIISKQQIIESLYTWASDINPSS 190 Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 I+VF+ +LR+KL +A G I + G GY L + + +T E Sbjct: 191 IEVFVSRLRRKLEDAGAGVG-IRMLRGLGYRLEQQPRPQTHE 231 >gi|256833090|ref|YP_003161817.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686621|gb|ACV09514.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 226 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD A++ + L E +NV V G+ I+ D ++LDLGL D+ G EV Sbjct: 4 VLLAEDDPAISEPLARALGREGYNVVVQGTGQGAIDHAG--AADLVVLDLGLPDMDGLEV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RA+R ++TPV +L+ + D V GL +GADDY++KPF EL+AR+RA++RR+ G Sbjct: 62 ARAIRQKGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHGD 121 Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I D+ V++ A G +HLT KE++++ +L + + + +++ + ++ Sbjct: 122 PTESEEITAQDVKVDVAAHRAFQDGRELHLTTKEFELLRVLVSQAGSVVGRDILMREVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ + LR+KL++ A YI TV G G+ Sbjct: 182 SEPIGSTKTLDMHVSWLRRKLNDDANNPRYITTVRGLGF 220 >gi|186475948|ref|YP_001857418.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184192407|gb|ACC70372.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 228 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + +E+ L++ F V G+ + +ILDLGL + G Sbjct: 10 MRILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLPKLSGM 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L++LR+ PV +L+ + DKVRGL +GADDY+ KPF+ EL++R RA++RRS+ Sbjct: 70 DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G LI LSV+ A+TV G R+ LT +E+ ++ L + LY Sbjct: 130 GRGSELIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E E I+V + LRKKL G + I TV G GYV+ Sbjct: 190 WHEEVESNAIEVHVSNLRKKL-----GGDVIRTVRGFGYVV 225 >gi|110832893|ref|YP_691751.1| transcriptional regulator QseB [Alcanivorax borkumensis SK2] gi|110646004|emb|CAL15480.1| transcriptional regulatory protein qseb [Alcanivorax borkumensis SK2] Length = 220 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD L I+ L++ F V L DG+ K +FDA++LDLGL D G Sbjct: 1 MHILLIEDDALLGDGIQAGLQAMGFTVAWVTLARDGLAAWKSVDFDALVLDLGLPDQEGS 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L R A ++ PV IL+ +++D++ GLQ GADDY+ KPF+ EL AR++A++RR+R Sbjct: 61 EALCQWREAGLTVPVLILTARDAVQDRIDGLQRGADDYLIKPFDLGELAARLQALLRRTR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ I G L V+ + V + + L +E ++ L + LT + + +Y Sbjct: 121 GQARPFIEHGRLRVDPFRQQVWLADKEVELQRREMALLLALLQSQGRLLTADQLADRVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E + V I LR+KL + +ETV G GY L Sbjct: 181 WMDGVESNALTVHIHNLRRKLDS-----RIVETVRGGGYRL 216 >gi|89902579|ref|YP_525050.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89347316|gb|ABD71519.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 221 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 128/227 (56%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + S+ +L++E + V +V D GE +D ++LDLGL G Sbjct: 1 MRLLLVEDDLMIGESVLDLLRAEGYAVDWVKD-GEMADTALDSQTYDLVLLDLGLPRRDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR LR K TPV + + +I +V GL GADDYI KP+ +EL+ARIRA++RR+ Sbjct: 60 LAVLRRLRARKDRTPVLVATARDAIAQRVEGLDMGADDYIVKPYELDELLARIRALIRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+ + +S+N + V + G + L+ +E+ ++ELL R L++ LY Sbjct: 120 AGRAEPVYEHLGVSINPVTREVLLDGQAVVLSAREWSILELLLARPGMVLSRRQLEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D+ ++V+I LRKKL G I+ V G GY++ ++A Sbjct: 180 SWKDDLSSNAVEVYIHGLRKKL-----GPRIIQNVRGVGYMIPQSAP 221 >gi|168703031|ref|ZP_02735308.1| two component heavy metal response transcriptional regulator, winged helix family protein [Gemmata obscuriglobus UQM 2246] Length = 224 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD A + L+ F V + G+DG+ L ++ ++LD+ L G+ Sbjct: 1 MKVLIIEDDTRTAEYLRKGLREAGFTVDIASRGDDGLHLAATGGYELVVLDIMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR A TPV L+ ++ D+VRGL+ GADDY+ KPF E +AR+R+++RR Sbjct: 61 SVLAALRAAGRQTPVLFLTAADAVTDRVRGLELGADDYLIKPFAFSEFLARVRSVLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V+ G ++ LT KE+ +I L++ R L++ + ++D Sbjct: 121 DRRTDVLRVADLEVDTVRLAASRAGRKLDLTPKEFGLIALMARRAGDVLSRTVIAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E ++DV + +LR KL + K I TV G GYVL E Sbjct: 181 MNFDSESNVVDVHVRRLRAKLDDPYPTK-LIHTVRGVGYVLEERG 224 >gi|38639718|ref|NP_943487.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae] gi|168998689|ref|YP_001687957.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae NTUH-K2044] gi|38016816|gb|AAR07837.1| SilR [Klebsiella pneumoniae] gi|238549704|dbj|BAH66055.1| silver resistance two-component system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 226 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFRVADLSMDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N G K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYIL 221 >gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 226 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G ++ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRFLVTVRGLGY 222 >gi|90416240|ref|ZP_01224172.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [marine gamma proteobacterium HTCC2207] gi|90331965|gb|EAS47179.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [marine gamma proteobacterium HTCC2207] Length = 219 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 122/219 (55%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDD +LA ++ L+ +N+ V G + + + + + D ILDLGL D+ G Sbjct: 1 MHILLVEDDTSLAAALCKALRQKNYAVNTVATGREALHVIRTEKPDMTILDLGLPDMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R ++ + IL+ S E+K+ GL SGADDY++KPF +EL+AR+R + RR Sbjct: 61 EVLKKARHSQPEIQILILTARSGTEEKITGLDSGADDYLAKPFEVDELLARLRVLERRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SL+ GD+ ++ V + G + L+ +EY ++ L T+ + N LY Sbjct: 121 SAKTSLVAVGDVVLDTTTNMVSMSGQNVELSRREYSLLRSLMENVGRVQTRSVLENRLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E ++V I LRKKL G ++I+TV G GY Sbjct: 181 WGEEVSSNALEVHIHNLRKKL-----GSDFIKTVRGVGY 214 >gi|297625540|ref|YP_003687303.1| two component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|32452353|emb|CAD59399.1| putative two-component system regulatory protein [Propionibacterium freudenreichii subsp. shermanii] gi|296921305|emb|CBL55858.1| two component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 242 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L ++D+ +L + + ++ E + G D + + DAI+LD+ L D G Sbjct: 18 IRVLAVDDENSLTELLSMAMRYEGWEPTTAATGSDAVRAARDTNPDAIVLDMMLPDFDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R + PV L+ ++ D++ GL +G DDY++KPF+ EEL+AR+R+++RRS Sbjct: 78 EVMRRVRAEQPDVPVIFLTAKDAVNDRIVGLTAGGDDYVTKPFSVEELMARLRSLLRRSG 137 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++S ++ GDL ++ D+ V G IHLT E++++ L L+K L+ Sbjct: 138 ATSKRSESELIVGDLVLDEDSHEVTRGGDEIHLTATEFELLRYLMRNPKRVLSKAQILDR 197 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ AG + I T+ G GYVL+ Sbjct: 198 VWNYDFGGQANVVELYISYLRKKID--AGREPMIHTMRGAGYVLK 240 >gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 237 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 134/232 (57%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K LA +EL L+ E + V + G ++ +FDAI+LDL L D+ G E Sbjct: 3 KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R +K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++RR + Sbjct: 63 IARRVRQSK-ATPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q ++ DL++ + V G + LT +EY ++ L KN + + Sbjct: 122 EKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + LN ++ E +++V++ LR K+ + G +YI+TV G GY++R+ Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DIPGQPSYIKTVRGTGYMVRD 232 >gi|218132654|ref|ZP_03461458.1| hypothetical protein BACPEC_00513 [Bacteroides pectinophilus ATCC 43243] gi|217992380|gb|EEC58383.1| hypothetical protein BACPEC_00513 [Bacteroides pectinophilus ATCC 43243] Length = 230 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL ED+K L++++ +LK+ N+ V G D + ++D IILD+ + G Sbjct: 1 MKLLLAEDEKELSNALVAVLKANNYIVDAVYDGADAYDWAVTDDYDGIILDIMMPKRNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR I TPV +L+ S +ED+V GL +GADDY++KPF +EL+ARIR + RR+ Sbjct: 61 DVLAQLRKDGIKTPVLLLTAKSEVEDRVLGLDTGADDYLTKPFAMKELLARIRVMTRRTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +A + + +N +E G + L KEYQM+E+L K ++ E F+ H++ Sbjct: 121 SYAPDTLDVDGMKLNRGNCMLEYNGGEVQLVNKEYQMLEMLMRNKGRLVSSEQFIEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + V ++ V I LR+KL+ I+ V G GY L Sbjct: 181 YETDINVNVVWVNISNLRRKLTQINAPVE-IKAVRGLGYRL 220 >gi|212637675|ref|YP_002314200.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212559159|gb|ACJ31613.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 225 Score = 137 bits (346), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 131/230 (56%), Gaps = 12/230 (5%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD A ++E ++K + N+ G G+ L ++D IILD L + Sbjct: 1 MKILMVEDD---ATTVEYVVKGFIEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R +++ Sbjct: 58 DGLKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117 Query: 118 RSRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RG +Q ++ G LS+ L + V + G I L KE+Q+++ L +N +++ + Sbjct: 118 --RGESQPMVTDLSVGPLSIELLTRKVTLDGQEILLQPKEFQLLKYLMEHENQVISRTLL 175 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 176 FEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQG 224 >gi|330876294|gb|EGH10443.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. glycinea str. race 4] Length = 225 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + D ++DLGL I G Sbjct: 1 MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ K F EEL AR+ A +RRS Sbjct: 61 DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKTFQFEELEARLNAWLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I+ G L ++L+ K + + LT EY+++E L L + KE + LY Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL + K IETV G GY+ E Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 222 >gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 222 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 136/221 (61%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED++ + ++ L+ NF+ + + G GI++ K FD ++LD+ L D+ G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLEKNNFDAFFAEDGNTGIDMFKNNSFDIVLLDVMLPDMSGWN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL+ +R + PV +++ S D++ G + GADDY+ KPF+ E+VARI+AI+ RS+ Sbjct: 63 VLKTIRESS-KIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAILSRSKW 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +LI ++++ D++ V+V G +I LT KE+ ++ LL+ L++E LN ++ Sbjct: 122 AESDNLISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNVVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ +D I +LR+KL + ++ I+TVWG GY L Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGDK---RDIIKTVWGYGYKL 219 >gi|328468880|gb|EGF39840.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329] Length = 218 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDDK L S+ L + V + G K F A+ILDL L DI G Sbjct: 1 MRLLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGAGVTSALKTEAFTAVILDLTLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R PV IL+ I D+V+GL GADDY+ KPF EEL+AR+R ++RR Sbjct: 61 EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ +I G LS++L +++ + LT E++++ L +KE L+ Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKK N A I+ + G GY+L Sbjct: 181 WDEGSSDNAIEVHIHNLRKKAPNVA-----IKNIRGVGYIL 216 >gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88] gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88] Length = 222 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 134/223 (60%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K L SI L+ + V + + G++ E+C ++D +ILD+ L + GF Sbjct: 1 MKLLIVEDEKQLLESIAEGLRLSGYVVDIAENGKEAEEMCFVEDYDLVILDINLPLMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+++R + + +L+ S +ED+V GL GA+DY+ KPF+ EEL ARIR+++RR Sbjct: 61 SVLKSIREHNKTVNIIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++IV G + + +++TV++ LT KE ++E L L K+ +++E L+H++ Sbjct: 121 VQQDAVIVCGPIKFDTNSRTVQIHDENFKLTKKETTILEYLILNKSRIVSQEEILDHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V + LR+KL + AG N I+ V G GY++ E Sbjct: 181 DSVDFLSNTVRVHMSTLRRKLKDKAGC-NIIKNVIGEGYIIDE 222 >gi|313890176|ref|ZP_07823811.1| putative response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|313121537|gb|EFR44641.1| putative response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] Length = 224 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++SI L + V D G++G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GDEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I TPV I++ ++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKELREKDIKTPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ I G+L V+LD V+V G + L GKEY ++ L +N L K + ++ Sbjct: 121 KFNENSITFGNLRVDLDRNAVKVNGSAVELLGKEYDLLIYLLQNQNVILPKSQIFDRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++V++ K+RKKL + N ++T+ GY+L+ N Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKDTDFATN-LQTLRSVGYILKAN 223 >gi|258542012|ref|YP_003187445.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01] gi|256633090|dbj|BAH99065.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01] gi|256636147|dbj|BAI02116.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-03] gi|256639202|dbj|BAI05164.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-07] gi|256642256|dbj|BAI08211.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-22] gi|256645311|dbj|BAI11259.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-26] gi|256648366|dbj|BAI14307.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-32] gi|256651419|dbj|BAI17353.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654410|dbj|BAI20337.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-12] Length = 243 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 1/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD +A I L + F V G G+E E D +++D L + G V Sbjct: 22 VLLVEDDGTIAEEIAAELTARGFKVLHEATGNAGLEAALRLEADIMVVDRLLPGLDGLSV 81 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R I PV +LS +S+++D+V GL++G DDY++KPF EELVARI A++RR Sbjct: 82 IETMRQQGIRMPVLVLSALSAVDDRVTGLKAGGDDYLTKPFAIEELVARIEALLRRPDDT 141 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G + ++L + V G I L +E++++E L R LT+ M L ++ R Sbjct: 142 RSTKLHLGPIDMDLIERRVWRDGREIELLPREFRLLEYLMRRPGQVLTRSMLLEDVWQYR 201 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P ++DV I KLR+K+ + G + IE++ G G+ LR Sbjct: 202 FIPRTNLVDVHIGKLRRKI-DGPGEEPLIESIRGTGFRLR 240 >gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032] gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K +A + L L+ E + V V + G DG++ + FD ++LD+ L ++ G E Sbjct: 5 KILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEESFDLVLLDVMLPELSGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R +TP+ +++ S+ DKV GL GA+DYI+KPF+ EEL+ARIRA +R + Sbjct: 65 VLRRVRKTNTATPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNIN 124 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q + + DL+VN + ++ G + LT +EY ++ L + LT++ L + Sbjct: 125 EQQEKETELSIADLTVNEKTRDIQRAGQMLELTPREYDLLVHLLKHQQQVLTRDQLLTAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I LRKK+ + K I TV G GYV++ Sbjct: 185 WGFDYFGDTNVVDVYIRYLRKKV-DYPFEKQLIHTVRGVGYVMK 227 >gi|194336101|ref|YP_002017895.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] gi|194308578|gb|ACF43278.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] Length = 227 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ +A ++ L+ E F V + G+ G+++ E+D II+D + I G Sbjct: 1 MRLLIIEDEPGIAGFLKDGLEEEYFAVDIAYDGKSGLDMALINEYDLIIVDWMIPAISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ L+ ++ED + GL +GA+DYI KPF EEL+ARIR +R Sbjct: 61 EVCRQIRKTGNAVPILFLTAKDTLEDVIFGLDAGANDYIKKPFEFEELLARIRVQLRNKN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + SL G L++N V + LT KE+ ++E L K+ T+ + H++D Sbjct: 121 RNDDSL-NAGILNINPVTHQVFCASTEVTLTPKEFALLEYLVRNKDRVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +IDV+I LR+KL AAG N I+T+ G GY++RE Sbjct: 180 IHFDSDTSVIDVYITFLRRKLE-AAGCGNIIQTIRGVGYIVRE 221 >gi|312113420|ref|YP_004011016.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311218549|gb|ADP69917.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 221 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ +A +E L++ + V GED ++ A+ILDLGL + G Sbjct: 1 MRVLLVEDDRRIADDVERALQASGYVVETAGEGEDAWFRGDTEDYAAVILDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A PV IL+ S ++V G+ +GADDY+ KPF+ EEL++R+RAI+RRS Sbjct: 61 SVLKRWRAADRRMPVLILTARGSWAERVDGIDAGADDYLPKPFHMEELLSRLRAIIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A SL+ GD++V+ V V+G + L+ EY+++ L L + + + +Y Sbjct: 121 GAASSLVSIGDVTVDDRQMRVSVRGVPVALSALEYRVVAYLVLHRGRVVPQHELEEAVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++V + ++R+KL G I T G GY++ E Sbjct: 181 HDEDHDSNALEVLMGRVRRKL-----GVPVIGTRRGFGYIVEE 218 >gi|264680915|ref|YP_003280825.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299530906|ref|ZP_07044320.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|262211431|gb|ACY35529.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298721127|gb|EFI62070.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 225 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 125/226 (55%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L+S V +V + E L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRTLRSSGAVVSHVANGSEADTALLTSSEFDLLILDLGLPKVHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR + PV IL+ SIE++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 LEVLKRLRGRGDALPVLILTAADSIEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A S I G L + + + G + L+ +E ++E+L R ++K+ + L Sbjct: 121 MGGASSTIKHGPLVYDQTGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +E I+V+I +LRKK+ G I TV G GY L + A Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPIRIATVRGLGYCLEKIA 223 >gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 222 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ LA+ I+ L E + + V GE+ K+ +D IILD+ L G Sbjct: 1 MKILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSYDLIILDIMLPKKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R I+TP+ +L+ S+ D+V+GL SGADDY+ KPF+ +EL AR+R+++RR Sbjct: 61 TVCQNIRKENINTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRRES 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL++N + V + ++ LT KEY ++E +T+ + ++D Sbjct: 121 FTRNPVLKVGDLTLNTLTREVWMGEKKLKLTPKEYNILEYFMRNPKIVVTRTILEEKMWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +IDV+I +LRKK+ + G +ETV G GY L Sbjct: 181 IDFEGNSNVIDVYIRRLRKKIGDKEG--KILETVRGAGYRL 219 >gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 236 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 127/219 (57%), Gaps = 2/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+ +A + L L+ F V G + +E+ K D ++LDL L I G+EV Sbjct: 10 VLVVEDDRNIAELVSLYLEKHGFKVLKAASGAEALEILKNETVDLVVLDLMLPGIDGWEV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + PV +L+ ++DK++G + GADDY+ KPF+ +EL+AR++A++RR+ Sbjct: 70 CRQIR-SNSQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRRAGET 128 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + DL+++L++ VEV G ++ LT +E +++ L+ T+E L ++ Sbjct: 129 KPRRVDLPDLTIDLESYVVEVAGRKVELTKRETELLYFLASHPGRVFTREFLLQRVWGFE 188 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +DV + +LR+KL + +I+TVWG GY L Sbjct: 189 FPGNTRTVDVHVNRLREKL-DGLPKSWHIKTVWGVGYKL 226 >gi|113968585|ref|YP_732378.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114049267|ref|YP_739817.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113883269|gb|ABI37321.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113890709|gb|ABI44760.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 220 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L + L + V + G DG L + F+A+ILDLGL PG Sbjct: 1 MRLLLIEDDTDLVARLIPALNKAGYTVEHANNGIDGAFLGEEEAFEAVILDLGLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R + PV IL+ + ++V GL++GADDY+ KPF+ EEL+AR+ A++RR Sbjct: 61 SVLSQWRQKGLLMPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +L+ +S+++D + V +G I LT EY+++ L ++K +Y Sbjct: 121 GRADNLLQHAGVSLDVDKQAVTNAEGDVIELTKIEYRLLHYLMANPTKIVSKSELSERIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+V++ +LR++L GK+YIET G+GY L++ Sbjct: 181 EEEQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKD 219 >gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 224 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59 +L++ED+K +A IEL L++E Y T++ DGI L KF E +ILDL L + G Sbjct: 6 VLIVEDEKDIARFIELELQAEG---YRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R + P+ IL+ ++ DKV GL +GADDY+ KPF+ EEL+AR+RA +RR Sbjct: 63 LEVARRIRKTS-NVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRV 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL +NL+ + V G RI L+ KE++++ELL+ ++ ++ Sbjct: 122 TPAITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G + ++DV+I LRKKL A G + I TV G GYVLRE+ Sbjct: 182 PGY-QGGSNVVDVYIGYLRKKL-EAGGERRLIHTVRGVGYVLRED 224 >gi|221067401|ref|ZP_03543506.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220712424|gb|EED67792.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 224 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 127/219 (57%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A ++ L S + V V++ G DG+ + + EFD +ILD+ L I G+ Sbjct: 1 MRILIIEDEIKSAEYLKKGLTSSGYQVEVSNDGVDGLFVAQSSEFDLLILDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R R + PV L+ S+ED+V+GL+ GADDY+ KPF+ EL+AR+R ++RR+ Sbjct: 61 SFIRRFR-ERSQVPVLFLTARDSVEDRVKGLELGADDYLIKPFSYAELLARVRTLLRRTP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + DL V++ + G RI LT KE+ +++LL K +++ + ++D Sbjct: 120 MRQQDIFQLADLEVDMLKRRAIRGGQRIDLTNKEFALLQLLLQHKGEVMSRSQIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++DV I +LR K+ + K I+TV G GY Sbjct: 180 MNFDSDTNVVDVAIRRLRAKIDDGFAVK-LIQTVRGMGY 217 >gi|237728197|ref|ZP_04558678.1| two-component system response regulator [Citrobacter sp. 30_2] gi|226910208|gb|EEH96126.1| two-component system response regulator [Citrobacter sp. 30_2] Length = 222 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD L + L ++E + + + + ++LDLGL D G Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLETGHYSLVVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R K S PV IL+ +++D+V GL GADDY+ KPF EEL ARIRA++RR Sbjct: 61 HFLTRIRQKKYSLPVLILTARDTLKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S ++ +L++N+ + V + G + LT KEY ++ L L+ + + +E+ N +Y Sbjct: 121 NQGESELIVSNLTLNIGRRQVWMDGQEVILTPKEYALLSRLMLKAGSPVHREILYNDIYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|319796546|ref|YP_004158186.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315599009|gb|ADU40075.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 224 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA ++ L++ V +V + + L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADALLRSLRTSGAAVDHVANGSQADTALMTHSEFDLLILDLGLPSLHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+L+ LR PV +L+ S+E++V+GL GADDY++KPF+ +EL AR+RA+ RR Sbjct: 61 IEILKRLRARGSQLPVLVLTAADSVEERVKGLDHGADDYMAKPFSLQELEARVRALTRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + I G L + + + G I L+ +E ++E+L R ++K+ ++ L Sbjct: 121 MGATSNAIRHGPLVYDQAGRVATIDGKMIELSARELGLLEVLLQRAGRLVSKDQLVDRLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E + I+V+I +LRKK+ G I TV G GY L Sbjct: 181 EWGEEVSLNAIEVYIHRLRKKIEK---GPVRIATVRGLGYCL 219 >gi|295097784|emb|CBK86874.1| heavy metal response regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 226 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLSV+L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TLITESQFKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N G K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYML 221 >gi|304313008|ref|YP_003812606.1| Two-component response regulator receiver [gamma proteobacterium HdN1] gi|301798741|emb|CBL46974.1| Two-component response regulator receiver [gamma proteobacterium HdN1] Length = 220 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD+ L + + +L+ + V D G DG L +FD IILDLGL PG Sbjct: 1 MKLLLVEDDETLVNELRPILQRAGYAVEHADNGIDGAFLGNEEDFDLIILDLGLPKKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R + + PV IL+ + ++V GL++GADDY+ KPF+ EL+AR+ AI RR Sbjct: 61 EVLQEWRKRQRNMPVLILTARDAWHERVDGLKAGADDYLGKPFHNAELLARLEAIARRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A + + +++++D + + H I LT E++++ L L +K H+Y Sbjct: 121 GKADNSLHWNGVTLDIDQQCAQQAPHSPIQLTAIEFRLLRYLMLNPLHFHSKTRLSEHVY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+V+I +LR+ GK++IET G+GY LR Sbjct: 181 EEDQIKDSNVIEVYINRLRQYF-----GKDFIETRRGQGYRLR 218 >gi|119476400|ref|ZP_01616751.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [marine gamma proteobacterium HTCC2143] gi|119450264|gb|EAW31499.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [marine gamma proteobacterium HTCC2143] Length = 228 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 134/225 (59%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 MRILLIEDD ++A I L+ ++V GE G+ L K E+D +++D L ++ G Sbjct: 1 MRILLIEDDISVADYIGKGLRQSGYSVEHCADGEQGLALAQKSEEYDVLVVDRMLPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ LR A +PV ILS + ++D+V+GL++G DDY+ KPF EL+ARI A++RR Sbjct: 61 LTIIQTLRAADNKSPVLILSALGEVDDRVKGLKAGGDDYLVKPFAFVELLARIEALLRRQ 120 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ + DL ++L A V G +L +EY+++E L +T+ M L ++ Sbjct: 121 KSSTSETKLKVADLEMDLLAHKVTRGGGGFNLQPREYKLLEYLMKHAGQVVTRTMLLENV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +P+ +IDV I +LR+K+ + + TV G GY+LR+ Sbjct: 181 WEYHFDPQTNVIDVHISRLRQKIDKDF-DQQLLSTVRGAGYMLRD 224 >gi|167647856|ref|YP_001685519.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350286|gb|ABZ73021.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 226 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L+ ++L L + V GE+ L + +DA++LDLGL + G Sbjct: 1 MRILLVEDDPDLSRQLKLALGDAGYAVDHAPDGEEAQFLGENEPYDAVVLDLGLPKVDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R I+TPV IL+ S +KV G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 SVLERWRRGNIATPVLILTARGSWNEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + G L ++ A V G + LT EY+++ + + + + + + HLYD Sbjct: 121 GHASPSLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VFI +LRKKL G IETV G GY L Sbjct: 181 QDFDRDSNTIEVFIGRLRKKL-----GAERIETVRGLGYRL 216 >gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 229 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 130/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +D I+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229 >gi|170694237|ref|ZP_02885392.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170140977|gb|EDT09150.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 219 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + +E L+ F V + D + G+ L + ++LDLGL + G Sbjct: 1 MRVLLVEDDDLIGCGVEAGLRQAGFTVDWARDGHKAGLAL-DTTSYALVVLDLGLPRVSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++L+ +R A PV +L+ ++ D+V GL++GADDY+ KPF+ EL AR RA++RR+ Sbjct: 60 MDLLKRIRDAGNDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELTARCRALLRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + +I GDL+VN A+T +V G R+ LT +E+ ++ L + ++ LY Sbjct: 120 QGRSVEVIRYGDLTVNPAAQTAQVAGTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E E I+V I LR+KL G I TV GYV+ Sbjct: 180 GWQQEIESNAIEVHISNLRRKL-----GARLIRTVRNIGYVV 216 >gi|332366461|gb|EGJ44209.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 224 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFERGADDYLTKPFYLEELKMRIQALLKRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++VNL + G + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDVTVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + V +++V++ K+RKKL A KN + T+ GY+L++ Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTAFAKN-LHTLRSVGYILKD 222 >gi|319942120|ref|ZP_08016438.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis 3_1_45B] gi|319804330|gb|EFW01214.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis 3_1_45B] Length = 218 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD + S+ L++E + +V D G + + +ILDLGL G Sbjct: 1 MRILLVEDDDMIGESVMAGLETEGHAIDWVRD-GNSALLALNTTPYSLVILDLGLPGKDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+ +R + TPV + + +++D+++GL SGADDY+ KP++ +EL ARIRA++RRS Sbjct: 60 LQVLKEMRGRRDPTPVLVTTARDTVDDRIKGLDSGADDYLIKPYDLDELSARIRALLRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +I G+L ++ + V +G + L+ KEY ++ L+ RK ++ LY Sbjct: 120 AGRADPVIERGELKISPATREVTYKGEPVILSSKEYALLAALAERKGVVWSRAQLEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+V I LRKKL+++A I+TV G GY+L Sbjct: 180 NWDNTVGSNAIEVHIHHLRKKLADSA-----IKTVRGVGYML 216 >gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104] gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104] Length = 222 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA ++ LK+E F V G DG+ FD +ILD+ L G+ Sbjct: 1 MRVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + TPV +L+ D+ GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G LS++ TV+ I LT +EY ++E L K+ +TK L +++D Sbjct: 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++V++ LR+K+ + G N IET+ G GY L Sbjct: 181 AHHHGPDNVVEVYVGYLRRKI-DVPFGTNTIETIRGVGYRL 220 >gi|33598501|ref|NP_886144.1| two-component response regulator [Bordetella parapertussis 12822] gi|33603445|ref|NP_891005.1| two-component response regulator [Bordetella bronchiseptica RB50] gi|33574630|emb|CAE39281.1| two-component response regulator [Bordetella parapertussis] gi|33577569|emb|CAE34834.1| two-component response regulator [Bordetella bronchiseptica RB50] Length = 225 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 129/221 (58%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ LA + L ++ V V G +G L +++ +ILD+ L DI GF Sbjct: 1 MRILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDYELVILDVMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR A +TPV +L+ +ED+VRGL+ GADDY+ KPF EL+AR+ A+ RR R Sbjct: 61 AVLAALRAAARNTPVLMLTARDRVEDRVRGLEGGADDYLVKPFAFSELLARVHALQRRGR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ DL ++L ++ + G R+ LT KE+ ++ LL R+ L++ ++D Sbjct: 121 SQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLALLLRRQGQILSRTTLAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +IDV I +LR KL + K + TV G GYVL Sbjct: 181 MNFDSDTNVIDVAIRRLRGKLDDPYDAK-LLHTVRGMGYVL 220 >gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam] Length = 232 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 130/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +D I+LD+ + ++ GF Sbjct: 10 MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 129 SLTTKQTIRYKGIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 232 >gi|260575288|ref|ZP_05843288.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] gi|259022548|gb|EEW25844.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] Length = 219 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ L ++ + +E + D + +D I+LDL L D G Sbjct: 1 MRILLVEDDRGLGSAVRDQIAAEGHTPDWVETLADATACTQTISYDLILLDLMLPDGRGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR LR +TPV IL+ I D++ GL +GADDY+ KPF+ EL ARI A+ RR Sbjct: 61 DFLRGLRKRGAATPVIILTARDRITDRIDGLNAGADDYLVKPFDLAELSARIGAVARRYS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + DL+++L A+++ I L+ +E+ + E+L R T + K LY Sbjct: 121 GNPNPQVHLADLTIDLAARSITSPEGPIDLSQREWIIFEVLLQRPGTIVPKGQIEERLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V++ +LRKKL G++ IETV G GY L Sbjct: 181 FDAEVESNTIEVYVSRLRKKL-----GRDVIETVRGMGYRL 216 >gi|322376362|ref|ZP_08050855.1| DNA-binding response regulator CiaR [Streptococcus sp. M334] gi|321282169|gb|EFX59176.1| DNA-binding response regulator CiaR [Streptococcus sp. M334] Length = 224 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 134/223 (60%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I+TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G++ VNL TV+V+ + + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLTYGNIVVNLSTNTVKVEDNPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL +N ++T+ GY+L++ Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYILKD 222 >gi|296156101|ref|ZP_06838940.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295893607|gb|EFG73386.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 225 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 132/221 (59%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A ++ L+ + V V + G G+ L E+D I+LD+ L + G+ Sbjct: 1 MRILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR + +TPV L+ ++D+VRGL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 GVVKTLRTTR-TTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI GDL ++++ + V+ G RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ + K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRTKIDDNFPVK-LIHTVRGVGYVL 219 >gi|159900447|ref|YP_001546694.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893486|gb|ABX06566.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 226 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 133/220 (60%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ LA IE L+ E+ V V G+ G+++ +D ++D L + G Sbjct: 1 MRVLLIEDDRKLARLIERALRDEHHQVDVAYEGDSGLDMALHGMYDVAVIDWMLPERDGP 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + RA+R AK++T + +L+ S IED+V GL SGADDY+SKPF EEL+AR+RA+ RR Sbjct: 61 SICRAIRAAKLTTSLLLLTARSQIEDRVAGLDSGADDYLSKPFAFEELLARVRALGRRFN 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S + +G++ ++L A T ++ LT E+ ++E L N L+++ L++++ Sbjct: 121 SNLSSEELRSGEIVLDLRAHTARRANQQLDLTATEWNLLECLIRNSNQALSRQQLLDYVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++DV+I LR+KL ++ I+TV G GY Sbjct: 181 SYERDVQPSMVDVYISYLRRKLEQPT-KRDPIQTVRGVGY 219 >gi|220933773|ref|YP_002512672.1| two component transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] gi|219995083|gb|ACL71685.1| two component transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] Length = 220 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L E V + G DG L + +D +ILDLGL D+ G Sbjct: 1 MRVLIVEDDAELGPRLRQRLAREGLAVDLAANGIDGRHLGETEPYDLVILDLGLPDLSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L A R A +S PV IL+ ++V GL++GADDY+ KPF+ EEL+AR++A++RR Sbjct: 61 DILTAWRRAGLSMPVLILTARDGWRERVEGLRAGADDYLGKPFHTEELLARVQALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ G ++ + + G LT EY+++ L+K HLY Sbjct: 121 PVRDTVLHVGPWRLDEQRQCLLNESGEETALTATEYRLLRYFLRHPGEVLSKTQLSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + +++V++ +LR KL G++ IET G+GYVLR+ Sbjct: 181 EYESERDSNVLEVYVRRLRDKL-----GRDLIETRRGQGYVLRKT 220 >gi|307153686|ref|YP_003889070.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306983914|gb|ADN15795.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 230 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 126/225 (56%), Gaps = 10/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-----KFYEFDAIILDLGLT 55 MRILL+ED+ L +++ K+ N Y+ D +DG E ++ E++ I+D L Sbjct: 1 MRILLVEDEPDLGEALK---KALNQKKYIVDWVQDGAEAWTCLESQWTEYNLAIVDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 I G ++++ LR K S PV +L+ +EDKV GL +GADDY+ KPF EL+AR+RA+ Sbjct: 58 GISGLDIIKRLRKQKNSLPVLMLTAKDQMEDKVIGLDAGADDYLIKPFGMAELLARLRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174 RRS G L ++ +TV + H+ + LT KE+Q++E N LT E Sbjct: 118 GRRSPQLQPQQFQRGLLILDYGTRTVYYKNHQTLPLTTKEFQLLEYFFNHPNQILTSEQI 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 NHL++ +EP ++ + LR+KL G KN IETV G GY Sbjct: 178 RNHLWEMGEEPLSNVVAAQVRLLRRKLE-TVGSKNSIETVHGVGY 221 >gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396] gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ LA + L L+ E ++V D G +G+E+ +FD I+LDL L ++ GFE Sbjct: 4 RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K +T + +++ I D V GL GADDYI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQQEK-NTYIMMMTARDLIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ DL +++ + V I LT +E+ ++ L N +T+E L Sbjct: 123 EATKNAPSKASTYRDLKLDVQNRAVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228 >gi|312622321|ref|YP_004023934.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202788|gb|ADQ46115.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 223 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 131/222 (59%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+DD + I+L L+ E F V + G DGI + K + +ILD+ L G+ Sbjct: 1 MKILVIDDDVKICEVIKLYLEKEGFEVVIAHNGMDGIAMFKNEMPNLVILDIMLPKKDGY 60 Query: 61 EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R LR KIS P+ +L+ DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+ Sbjct: 61 EVCRELR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +G + ++V +L+VNL V+++ I + KE +++ L+ N T+E L+H Sbjct: 119 QGEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDH 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV I ++R+K+ I+TVWG GY Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIEKDKYPWK-IKTVWGVGY 219 >gi|260768252|ref|ZP_05877186.1| two-component system response regulator QseB [Vibrio furnissii CIP 102972] gi|260616282|gb|EEX41467.1| two-component system response regulator QseB [Vibrio furnissii CIP 102972] Length = 214 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 11/219 (5%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDIPGFEV 62 +EDD L I L+ +V +L +DGI+ E+D I+LDLGL + G V Sbjct: 1 MEDDARLGEQIIASLEQTG---WVPELSQDGIDALYRATSEEWDVIVLDLGLPKLDGLTV 57 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R I+TPV ILS ++ +V GL +GADDY++KPF EL+ARIRA +RR+ G+ Sbjct: 58 LKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRASGN 117 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A ++ GDLS++ + V +G I+LT EY+++ +++ + H+Y Sbjct: 118 ASPVMQIGDLSLDTRSSKVMWRGQAINLTALEYKVVAYFMHNPEKVISRTELVEHIYKQD 177 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VFI ++RKK++ N I+TV G GY L Sbjct: 178 FDRDSNTIEVFIGRIRKKIA-----PNIIKTVRGLGYQL 211 >gi|221069766|ref|ZP_03545871.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220714789|gb|EED70157.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L+S V +V + E L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRTLRSSGAVVSHVANGSEADTALLTSSEFDLLILDLGLPKVHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR + PV IL+ SIE++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 LEVLKRLRGRGDALPVLILTAADSIEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A S I G L + + + G + L+ +E ++E+L R ++K+ + L Sbjct: 121 MGGASSTIKHGPLVYDQTGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E I+V+I +LRKK+ G I TV G GY L Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPIRIATVRGLGYCL 219 >gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8] gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8] Length = 220 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA + L+ + V G + +D ++LDLGL + G Sbjct: 1 MRILVVEDEPTLATQLADALRQAGYTVDTAADGGTAQYMGAVETYDVVVLDLGLPVMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R PV IL+ + +KV G+ +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 TVLKQWRAGGQGMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G L ++ V V G + LT E++++ +L R +++ H+Y Sbjct: 121 SHASAQWRCGPLMLDTRLAKVTVDGQALSLTSHEFKVLAVLMQRAGEVISRSELTEHVYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDVFI +LRKKL + IETV G GY L Sbjct: 181 QDHDRDSNTIDVFIGRLRKKLP-----PDTIETVRGLGYRL 216 >gi|153814038|ref|ZP_01966706.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756] gi|317502379|ref|ZP_07960544.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium 8_1_57FAA] gi|331087969|ref|ZP_08336892.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848434|gb|EDK25352.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756] gi|316896189|gb|EFV18295.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium 8_1_57FAA] gi|330409280|gb|EGG88729.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium 3_1_46FAA] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 128/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++AL+ ++ +L+ N++V G+ ++ + +D ++LD+ + + G Sbjct: 1 MRLLLAEDERALSKALTAILERNNYSVDAVYDGQSALDYLEADNYDGVVLDIMMPKVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R P+ +L+ S ++DKV GL +GA+DY++KPF+ +EL+ARIRAI R Sbjct: 61 TVLRKVRERGNLIPILLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAITRAQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S + G+++++ A + L KE+QM+ELL + ++ E FL ++ Sbjct: 121 AQANSKLKMGNVTLDRAAFELSTSKGSFRLANKEFQMLELLMCNPHQLISSERFLEKIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E+ ++ V+I LRKKLS A I+ GY L E + Sbjct: 181 YDSEAEINVVWVYISYLRKKLS-ALHADIQIKATRNAGYSLEERS 224 >gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 283 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L E + V V G D + +DAI+LDL L + GF Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A PV +L+ ++D++RGL +GADDY+ KPF+ EL AR+RA+VRR Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ V G + L+ KE+ ++ LL + LT+ ++H++D Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + I+D ++ +R+K+ + G + IETV G GY LR A+ Sbjct: 210 FAFDGTSNIVDQYVRYVRRKI-DIPDGPSLIETVRGVGYRLRTPAE 254 >gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5] gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 232 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +E+ L+SE + V D G D +E + E D I+LD+ L + G E Sbjct: 4 KILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEVDLILLDVMLPGMSGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 +LR +R T V +L+ SS+EDKV GL GA+DYI+KPF EEL+ARIRA +R Sbjct: 64 LLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQGK 123 Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A + DL +N + V G RI LT +E+ ++ L K L +E L Sbjct: 124 PLPEEEAAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQIL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++DV+I +RKK+ + G + I TV G GYVL+EN Sbjct: 184 AAVWGYDYYGDTNVVDVYIRYVRKKIDH-GGTQELIHTVRGVGYVLKEN 231 >gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 235 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/225 (40%), Positives = 132/225 (58%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59 IL++ED+K +A IEL L++E Y T++ DGI L KF E +ILDL L + G Sbjct: 17 ILIVEDEKDIARFIELELQAEG---YRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDG 73 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R + P+ IL+ ++ DKV GL +GADDY+ KPF+ EEL+AR+RA +RR Sbjct: 74 LEVARRIRKTS-NIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRV 132 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL +NL+ + V G RI L+ KE++++ELL+ ++ ++ Sbjct: 133 TPAITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G + ++DV+I LRKKL A G + I TV G GYVLRE+ Sbjct: 193 PGY-QGGSNVVDVYIGYLRKKL-EAEGERRLIHTVRGVGYVLRED 235 >gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 232 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ ++ + L E F V GE+ +++ +F+ I+LDL L I G E Sbjct: 4 KILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQKFEVILLDLMLPKIDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR +R +K PV I+S DK GL GADDYISKPF+ E++ARI+A +RR R Sbjct: 64 CLRMIR-SKSMVPVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATIRRERH 122 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + SL I GDLSV+L +V+ +I+LT KE+ +++L + TK Sbjct: 123 YKSSLSSKEEKIIKIGDLSVDLHGFSVKKFNEKINLTAKEFNILKLFISNPSQVYTKSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V I +LR+K+ + YI+T+WG GY L Sbjct: 183 YKSVWEDEYHGDENVINVHIRRLREKIEDDPSHPMYIKTLWGIGYKL 229 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] gi|151280902|gb|ABR89312.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 130/224 (58%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED+ + L+ F V G +G++L ++ +ILD+ L + G+ Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR + TPV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R ++RR Sbjct: 61 QLLRELRKVR-DTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SLI D+ +++ + V G R+ LT KE+ ++ LL+ R+ L++ + + ++D Sbjct: 120 VRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++DV I +LR KL + + I+TV G GYVL E Sbjct: 180 MNFDSDTNVVDVAIRRLRAKLDDPH-PRKLIQTVRGIGYVLEEG 222 >gi|65320484|ref|ZP_00393443.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 3 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +T V +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 63 QVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 183 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 223 >gi|153815974|ref|ZP_01968642.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756] gi|145846621|gb|EDK23539.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+K L I LK E ++V G++ E ++DA+ILD+ + G Sbjct: 1 MRILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYLTAVKYDAVILDIMMPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K STPV +L+ S+ED+V GL +GA+DY+ KPF EEL+AR+R ++R+ Sbjct: 61 SVLKEMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKPE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V+LD V I L+GKE+ ++ + L+++ HL++ Sbjct: 121 EMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +IDV+I LRKK+ + K I TV G GYVL+E Sbjct: 181 YDYMGSSNVIDVYIRYLRKKIDDGR-EKKLIHTVRGVGYVLKE 222 >gi|160901586|ref|YP_001567167.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160359230|gb|ABX30844.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 133/226 (58%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF---DAIILDLGLTDI 57 RIL++EDDKA++ +EL L +NV + +DG E KFYE D I+LD+ L Sbjct: 2 FRILVVEDDKAISRLLELELTHVGYNV---KIAKDGDEALKFYENFKPDIILLDIMLPIR 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEV A+R + +++ +E KV+GL++ ADDY+ KPF EE++ARI A+++ Sbjct: 59 DGFEVAEAIRDYDSDIGIIMITAKGELESKVKGLKN-ADDYVVKPFEIEEILARIEALLK 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G + LI GD+ + V V +HL+ E+ +++LL++ KN ++KE L Sbjct: 118 RM-GKTKELIKVGDIEIYPQNMEVLVNKKNVHLSLTEFNILKLLAINKNIVVSKEKILEE 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ DE +++V+I LRKKL ++ IETV G GYV+RE Sbjct: 177 IWGYYDEENNNLVEVYINYLRKKLKDSTQN---IETVRGVGYVIRE 219 >gi|238918413|ref|YP_002931927.1| DNA-binding transcriptional regulator BasR [Edwardsiella ictaluri 93-146] gi|238867981|gb|ACR67692.1| transcriptional regulatory protein BasR/pmrA [Edwardsiella ictaluri 93-146] Length = 220 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD + + + EN+ D L + + IILDLGL DI G Sbjct: 1 MKILIVEDDTLIQQGLAQAMARENYAYDCADSAVGASALLQSSHYSLIILDLGLPDIDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR R I PV IL+ ++ D+V GL +GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 NALRQWRREGIDAPVLILTARDTVSDRVDGLDAGADDYLVKPFALAELLARVRALIRRMQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + D+ ++L ++ V G + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GLCNNFLQVDDIHLDLSSQQVTCGGQALEITPKEFAILARLMMRAGQTINREVLQQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D ++V I LR+KL GK I+T+ G GY L Sbjct: 181 WQDGLSSNSLEVHIHNLRRKL-----GKKRIKTLRGVGYRL 216 >gi|125717796|ref|YP_001034929.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|125497713|gb|ABN44379.1| Two-component response transcriptional regulator (CheY-like receiver domain and a winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|324990861|gb|EGC22796.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|324993111|gb|EGC25031.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324995585|gb|EGC27497.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|325687908|gb|EGD29928.1| DNA-binding response regulator [Streptococcus sanguinis SK72] gi|327461377|gb|EGF07708.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327469539|gb|EGF15008.1| DNA-binding response regulator [Streptococcus sanguinis SK330] gi|327489235|gb|EGF21028.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|328946064|gb|EGG40210.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] gi|332361465|gb|EGJ39269.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++VNL + G + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDVTVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + V +++V++ K+RKKL A KN + T+ GY+L++ Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTAFAKN-LHTLRSVGYILKD 222 >gi|317500916|ref|ZP_07959126.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium 8_1_57FAA] gi|331089184|ref|ZP_08338087.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897619|gb|EFV19680.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium 8_1_57FAA] gi|330405961|gb|EGG85487.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium 3_1_46FAA] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+K L I LK E ++V G++ E ++DA+ILD+ + G Sbjct: 1 MRILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYLTAVKYDAVILDIMMPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K STPV +L+ S+ED+V GL +GA+DY+ KPF EEL+AR+R ++R+ Sbjct: 61 SVLKKMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKPE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V+LD V I L+GKE+ ++ + L+++ HL++ Sbjct: 121 EMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +IDV+I LRKK+ + K I TV G GYVL+E Sbjct: 181 YDYMGSSNVIDVYIRYLRKKIDDGR-EKKLIHTVRGVGYVLKE 222 >gi|91790516|ref|YP_551468.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91699741|gb|ABE46570.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 223 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L++ +V E L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRTLRASGAAADHVASGTEADAALLTNTEFDLLILDLGLPRMHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR + PV IL+ S+E++V+GL GADDY++KPF+ +EL AR+RA++RR Sbjct: 61 LEVLKRLRARGSALPVLILTAADSVEERVKGLDYGADDYMAKPFSLQELEARVRALIRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A S I G L + + + G + L+ +E ++E+L R ++K+ + L Sbjct: 121 MGGASSTIKHGPLVYDQAGRVATIDGQMLELSARELGLLEVLLQRAGRLVSKDQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E I+V+I +LRKK+ G I TV G GY L Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPIRIATVRGLGYCL 219 >gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD + IE LK ++++V GE+ + L + +FD I+LDL L + G E Sbjct: 4 RILLVEDDNDINQLIESQLKQDHYSVDSARDGEEALALFQKEKFDLILLDLMLPKVNGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV I+S S DK GL GADDYISKPF+ EL AR++A +RR+ Sbjct: 64 LLKHIRETS-KVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATV 122 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +A++ +I DL ++L + +V+V+G + LT KE+ +++LL + TKE Sbjct: 123 YAETESKPADPPVITFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTHHSRVFTKEQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ +I+V I +LR+K+ YI T+WG GY Sbjct: 183 IYQLIWEEDYYGNENVINVHIRRLREKIEEDPSAPQYIRTIWGIGY 228 >gi|167759417|ref|ZP_02431544.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704] gi|167662974|gb|EDS07104.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + V GE+ ++L K +D I+LD+ L GFE Sbjct: 4 RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKLAKENAYDMILLDIMLPKHDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIREFS-DVPIVMLTARGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122 Query: 120 RGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R AQ +I+ GD+ ++ +++ V + I+LT KE+ ++ELL++ N ++E LN Sbjct: 123 RDKAQPNDKIIIKGDMKIDCESRRVFIGEKEINLTAKEFDLLELLAMNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY R Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYFR 228 >gi|146302027|ref|YP_001196618.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156445|gb|ABQ07299.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 223 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LLIEDDK ++ I L+ NF V++ + GE +L + +D I++D+ L I G Sbjct: 1 MNVLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R KI TP+ ILS +S+ +DKV L SGADDY+ KPF+ +EL++R+ A+ RR++ Sbjct: 61 QLVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTK 120 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++L G L++N D V I L+ +EY+++ L +N +++ L Sbjct: 121 FNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++DV+I LR K+ + +I T+ G GY+L+E Sbjct: 181 VWGINYDNNTNVVDVYISYLRNKIEH---NHKFIHTIKGIGYMLKE 223 >gi|331091615|ref|ZP_08340449.1| hypothetical protein HMPREF9477_01092 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403372|gb|EGG82931.1| hypothetical protein HMPREF9477_01092 [Lachnospiraceae bacterium 2_1_46FAA] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K L+ +++ +L+ +++V G ++ + +D +ILD+ + I G Sbjct: 1 MRLLLVEDEKPLSRALKAILERNHYSVDAVYDGRAALDYLEADNYDGVILDIMIPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R S PV +L+ S +EDKV GL SGA+DY+SKPF+ EEL+ARIRA+ R Sbjct: 61 TVLKTIRSCGNSIPVLLLTAKSEVEDKVLGLDSGANDYLSKPFHAEELLARIRAMTRTQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + G++ ++ + +L KE+QM+EL+ L N ++ E F+ +++ Sbjct: 121 AQNDSKLQIGNIILDRATFELSTPSGSYNLANKEFQMLELMMLNPNHLISAEKFIENIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E+ ++ V+I LRKKL+ A I+ GY L E Sbjct: 181 YDSEAEMNVVWVYISYLRKKLA-ALHANVRIKVTRNVGYSLEE 222 >gi|300916216|ref|ZP_07132966.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300416452|gb|EFJ99762.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] Length = 227 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 2 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 62 DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S + DLSV+L ++ V G+RI LT KE+ ++E L + + + ++ Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHHGEVLPRSLIASQVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N G K I+TV G GY+L Sbjct: 182 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYML 222 >gi|158340812|ref|YP_001521980.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] gi|158311053|gb|ABW32666.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] Length = 792 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 126/226 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ +A +++ +L N+ V + G+ EL + +E+D I+ D+ L + G Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR P+ +L+G S D+ GL +GADDY+ KPF+ EEL AR+RA++RR Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L ++ A V+ Q + LT KEY ++EL+ + M L H++ Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D P + + I LR+KL + + IETV+G GY L+ A+ Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLKPLAE 226 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 14/127 (11%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF------DAIILDLGLT 55 RI++++DD + ++ + K V D E +F+E D ++LD+ + Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLD------EPTQFWETLTNSPPDLLLLDVEMP 542 Query: 56 DIPGFEVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 +I G ++ R +R + P+ L+ + + + SGADD+ISKP ELV RI Sbjct: 543 EIGGIDLCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYASGADDFISKPIVGPELVVRIL 602 Query: 114 AIVRRSR 120 + R+R Sbjct: 603 NRLERTR 609 >gi|123443239|ref|YP_001007213.1| transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090200|emb|CAL13063.1| transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 135/223 (60%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + + L F+V ++ G +G+ Y++DAIILD+ L + G+ Sbjct: 1 MRLLLVEDEEKTSSYLSRALGESGFSVDISADGAEGLHYALEYDYDAIILDVMLPGMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL +R +K TP+ +LS S++++V+GL+ GADDY+ KPF+ ELVARI+A+VRR Sbjct: 61 RVLEGIRASK-QTPMLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRS 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + + DL ++L A+ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 TDGADITQLQIHDLHLDLLARRVFRTGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +++V I +LR K+ +A + TV G GYVL Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DAPFEVKLLHTVRGMGYVL 221 >gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293] gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L SI +L E F V GE+G+ L +DAI+LD+ + ++ GF Sbjct: 7 MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDYI KPF EL ARIRA++RRS Sbjct: 66 EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V+V G + LT K+Y+++E L L +E + ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229 >gi|297567509|ref|YP_003686481.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851958|gb|ADH64973.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 218 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 135/221 (61%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + ++ L++E + V GE+ + L + + +D ++LD+GL GF Sbjct: 1 MRILLVEDDLEVGSLVKETLEAEPYAVDWAQDGEEALGLWQSFPYDLVVLDVGLPRRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR + PV +L+ ++D+VRGL++GADDY+ KPF+ EL AR+RA++RRSR Sbjct: 61 SLLTHLRGQGGAAPVLMLTARDGLDDRVRGLEAGADDYLIKPFHLRELRARVRALLRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + + G LS++L AK +G + L+ KE+ ++E LSL +T +E L H++ Sbjct: 121 GVSSNRVEVGRLSLDLRAKQAWWEGEPLELSAKEWLILEFLSLHPDTFYPRESLLEHVWP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G + + +D +I +LR+KL+ A IET G GY L Sbjct: 181 GEASIDPRSLDPYISRLRQKLAPEA-----IETRRGLGYRL 216 >gi|77465512|ref|YP_355015.1| two component transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77389930|gb|ABA81114.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides 2.4.1] Length = 220 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++EDD +A + + L S F V GE L +D I+LDLGL + G Sbjct: 1 MRALVVEDDARIAQDLSVALGSAGFRVETAADGETAWFLGGTEGYDLIVLDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R + PV +L+ + ++V G+ +GADDY+ KPF EELVAR RA+VRRS Sbjct: 61 AVLKRWRAEGVEIPVLVLTARGTWTERVEGIDAGADDYLPKPFRIEELVARARALVRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L G L+++++ T + G + L E++++ L L ++ + L HLY Sbjct: 121 GRAAPLQSVGRLALDMNRMTATLDGLPLGLAPLEFRLLAYLMLHRDRVVPPTELLEHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E ++ + +LR+K+ G+ I T G GY L Sbjct: 181 DNDAREANALEAVVARLRRKV-----GRGVIGTRRGFGYQL 216 >gi|146280320|ref|YP_001170476.1| cold-shock DNA-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145558561|gb|ABP73171.1| putative cold-shock DNA-binding domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 222 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ LA I L + V + GE+G L A +LDLGL I G Sbjct: 1 MKVLVVEDDRDLAGQIAAALAQAGYTVELAHDGEEGEFLGATETVGAAVLDLGLPGIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR R A +S PV IL+ + DKV G ++GADDY+ KPF EE+ R+ +++RR+ Sbjct: 61 EVLRRWRGAGLSFPVLILTARDAWSDKVAGFRAGADDYVLKPFRMEEVTLRLSSLIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G L ++ ++G + LT E +++ L L K +++ H+YD Sbjct: 121 GHATAELAAGGLVLDTATGLATLEGMPLRLTAFEARLLRYLMLNKGRVVSRTELSEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + ++V I +LRKK+ G+ +ET G GY L Sbjct: 181 RDADRDFRSLEVVIGRLRKKI-----GEARVETRRGEGYRL 216 >gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1] gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1] Length = 223 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL ED+ AL LK+E F V G + ++ ++D +ILD+ + I G Sbjct: 1 MRILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + PV +L+ ++ D+V GL +GADDY++KPF EL ARIRA++RR+ Sbjct: 61 TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL+V + V G I L+ +E+ ++E L K L++ N ++D Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E I+DV+I LRKK+ + K I TV G GY LRE Sbjct: 181 FGFEGGSNIVDVYIRYLRKKIDDPF-EKKLIHTVRGAGYTLRE 222 >gi|30263158|ref|NP_845535.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47528519|ref|YP_019868.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49186004|ref|YP_029256.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165869195|ref|ZP_02213855.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632295|ref|ZP_02390622.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167637425|ref|ZP_02395705.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705083|ref|ZP_02895548.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650226|ref|ZP_02933227.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564881|ref|ZP_03017802.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227813979|ref|YP_002813988.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229603313|ref|YP_002867425.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254723170|ref|ZP_05184958.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738231|ref|ZP_05195934.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742601|ref|ZP_05200286.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254752546|ref|ZP_05204582.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761062|ref|ZP_05213086.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30257792|gb|AAP27021.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47503667|gb|AAT32343.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49179931|gb|AAT55307.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164715921|gb|EDR21438.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514932|gb|EDR90298.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167532593|gb|EDR95229.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129938|gb|EDS98800.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172084178|gb|EDT69237.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564198|gb|EDV18162.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227002806|gb|ACP12549.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229267721|gb|ACQ49358.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +T V +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 221 >gi|319896803|ref|YP_004134997.1| transcriptional regulatory protein qseb [Haemophilus influenzae F3031] gi|317432306|emb|CBY80659.1| transcriptional regulatory protein QseB [Haemophilus influenzae F3031] Length = 220 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 8/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + + +++ L + F V + TD G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTTLGFAVDWFTD-GKTGMAALTSAPYDAVVLDLTLPKLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ R PV IL+ +++++V+ LQSGADDY+ KPF E+ AR++A++RR Sbjct: 60 LEVLQQWRSNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ S+I + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 120 -GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL GK +I TV G GY L Sbjct: 179 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 215 >gi|158521332|ref|YP_001529202.1| two component transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510158|gb|ABW67125.1| two component transcriptional regulator, winged helix family [Desulfococcus oleovorans Hxd3] Length = 234 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 129/233 (55%), Gaps = 13/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 RIL+I+DDKAL + + + V G DGI+ + D ++LD+ L DI GF Sbjct: 4 RILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDIDGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R A PV +L+ D++ GL+ GADDY+ KPFN EL+ARI+A++RR+ Sbjct: 64 ETLKKIR-AISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRAT 122 Query: 121 GHAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A++ V+ G + ++ + + G I +TG E ++ L K T LT+ Sbjct: 123 ASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPLTR 182 Query: 172 EMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + L+ L GRD E + IDV I ++RKKL + YI+TVWG+GY+ E Sbjct: 183 DRLLD-LASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWAE 234 >gi|77460076|ref|YP_349583.1| two component heavy metal response transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384079|gb|ABA75592.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Pseudomonas fluorescens Pf0-1] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 129/226 (57%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED + L FN + G G +L ++ +ILD+ L G+ Sbjct: 1 MKLLIVEDQPKTGQYLRQGLTEAGFNTELVADGTTGQQLALSGDYALLILDVMLPGRNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A+R A + TP+ L+ ++ED+V GL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 QILQAVRSAGLETPILFLTAKDTVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + + DLS++L + VE G RI LT KE+ ++E+L R+ L K + + ++ Sbjct: 121 STPQETSLRLADLSLDLIRRRVERSGQRIDLTAKEFALLEMLLRRQGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +I+V I +LR K+ + K I TV G GYVL E A Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDDFPNK-LIHTVRGMGYVLEERA 225 >gi|298250454|ref|ZP_06974258.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297548458|gb|EFH82325.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 228 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 128/226 (56%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL +ED+K +A +I +LK N++V V GE G+++ +D IILD+ L G Sbjct: 1 MKILYVEDEKYMARAIAQVLKKNNYSVDVCYDGESGLDMALTDLYDIIILDILLPQKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR TPV +L+ +EDKV GL SGADDY+ KPF EEL+AR+RA+ RR + Sbjct: 61 SVLRELRRKGRETPVILLTAKGDLEDKVEGLDSGADDYLPKPFQAEELLARLRALGRR-K 119 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G L+ D+ +N + +G+ HLT KE Q++ELL K T L+ + + L Sbjct: 120 GQFLPDGLLRFEDIELNPHTLNLYCKGNSFHLTLKESQLLELLIRNKGTLLSPNLIIEKL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLS---NAAGGKNYIETVWGRGYVL 221 + E E + V + LRKKL+ + G KN V G GYVL Sbjct: 180 WGYDTEAEDSHVRVHVAFLRKKLALLQSVVGIKN----VRGAGYVL 221 >gi|17232815|ref|NP_489363.1| hypothetical protein all5323 [Nostoc sp. PCC 7120] gi|17134462|dbj|BAB77022.1| all5323 [Nostoc sp. PCC 7120] Length = 610 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 1/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ L +++ V + GE EL ++ I+LD+ L + G Sbjct: 1 MRILLVEDDDLLAQAMATTLTKQHYAVDIAADGEVAWELVSVCNYELILLDVVLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR A + +L+ S DK+ GL +GADDY+ KPF+ +EL ARIRA++RR Sbjct: 61 SLCRQLRQAGYQMLILLLTAKDSQTDKILGLDTGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ + V ++LT KE+ ++EL T ++ + L+ Sbjct: 121 TSLPPVLAWGSLRLDPSSCEVTYADKPLNLTAKEFSILELFLRNNQRTFSRGAIVEKLWS 180 Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +D PE I I LR+KL A +IETV+G GY L+ A + C Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLQAAGANYAFIETVYGMGYRLKALAHEANC 231 >gi|323485044|ref|ZP_08090397.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] gi|323693581|ref|ZP_08107783.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673] gi|323401600|gb|EGA93945.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] gi|323502356|gb|EGB18216.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 128/224 (57%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+ LA ++ +L+ F+V + G D ++ ++D I+LD+ + G Sbjct: 1 MRILIAEDEVELAKGLKFLLEKNKFSVDTVNNGADALDYFHSTDYDVIVLDIMMPKKNGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R + PV +L+ S IED+V GL++GADDY+ KPF E +AR++A+ RR+ Sbjct: 61 EVLSQIRSEGAAVPVLMLTARSEIEDRVAGLEAGADDYLPKPFATREFIARVKALARRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A +++ G++ ++ + + + + L KEYQ++EL + + + ++ ++ Sbjct: 121 GYADTVLSLGNVRLDCNRYELSCKEETVRLNNKEYQLMELFFQHPHFVFSTDHLMDKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E ++ ++ +I +RKKL + G I+TV G GY L N Sbjct: 181 KDSEADIDVVWTYIGFIRKKLKH-IGADIEIKTVRGAGYSLEGN 223 >gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 234 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 131/224 (58%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ + L+ F V + GE+ IE F + IILDL L + G E Sbjct: 4 KVLVVDDEQSIVTLLTYNLEQAGFTVLTANDGEEAIEKVAFEQPAFIILDLMLPKLDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K+ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR Sbjct: 64 VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQL 123 Query: 119 SRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G ++ IV GDL + D+ +G R+ LT KE++++ L+ K LT++ L+ Sbjct: 124 SNGEMETKEIVIGDLKILPDSYEAYFRGERLELTPKEFELLVYLAKHKGRVLTRDQLLSS 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+DV I LR+K+ YI+T+ G GY L Sbjct: 184 VWNYDFAGDTRIVDVHISHLREKIEQDTKKPIYIKTIRGLGYKL 227 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] gi|133739701|emb|CAL62752.1| Transcriptional regulatory protein TctD [Herminiimonas arsenicoxydans] Length = 233 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 127/229 (55%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRILL EDD LA + L+ YVTD ++G+E +FD +ILDLGL + Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSG---YVTDCVKNGVEADSALSTQDFDLLILDLGLPKM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL+ LR PV IL+ SIE +V+GL GADD+++KPF EL AR+RA+ R Sbjct: 58 SGLEVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G ++I G LS + + + + L+ +E ++E+L R ++KE ++H Sbjct: 118 RGAGGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L + +E I+V++ +LRKK+ G I TV G GY L + A+ Sbjct: 178 LCEWSEEVSNNAIEVYVHRLRKKIEI---GGLRIATVRGLGYCLEKFAE 223 >gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ LA + L LK E + + G G++L ++D I+LDL L ++ G E Sbjct: 3 KVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR K TP+ +++ S+ D+V GL GADDY+ KPF EEL+ARIR+++RR Sbjct: 63 VARRLREVK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRITI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +S+I DL + + + I+LT +EY ++ L N ++E L Sbjct: 122 ETETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + +YI+TV G GYV+R Sbjct: 182 KEVWGFNSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228 >gi|299534067|ref|ZP_07047419.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|298717976|gb|EFI58981.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 209 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 124/213 (58%), Gaps = 11/213 (5%) Query: 12 LAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDIPGFEVLRALRV 68 + ++ +L+ E YV D +DG + +++D ++LDLGL + G +VLR LR Sbjct: 2 IGQAVLALLRGEG---YVVDWVQDGAQADTALHGHQYDLVLLDLGLPKLDGLQVLRQLRA 58 Query: 69 AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIV 128 K +TPV + + ++ D++ GL +GADDY+ KP++ +EL+ARIRA+ RR+ GH ++ Sbjct: 59 RKDATPVLVATARDAVHDRIAGLDAGADDYVIKPYDMDELLARIRALTRRAAGHLDAVYE 118 Query: 129 TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVK 188 G + +N + + V G + L+G+E+ +++ L R TL+++ + LY DE Sbjct: 119 HGGVMLNPNTREASVNGQPVTLSGREWAVLQALLARPGATLSRQQIEDKLYGWGDEVSSN 178 Query: 189 IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++V+I LRKKL AA + V G GY++ Sbjct: 179 AVEVYIHGLRKKLGAAA-----VLNVRGLGYMV 206 >gi|257464655|ref|ZP_05629026.1| two component heavy metal response transcriptional regulator, winged helix family protein [Actinobacillus minor 202] gi|257450315|gb|EEV24358.1| two component heavy metal response transcriptional regulator, winged helix family protein [Actinobacillus minor 202] Length = 232 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 131/232 (56%), Gaps = 5/232 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L F V + G DG+ ++ IILD+ L + G+ Sbjct: 1 MKILVVEDEIKAGDYLKQGLSEAGFMVDIARNGVDGLHFALTEDYQLIILDVMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR A+ P+ +L+ +EDKV+G + GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QVLQMLRQAEKKFPILLLTAKDQVEDKVKGFELGADDYLVKPFAFAELLARVRTLLRRIP 120 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + T DL ++L + V GHRI LT KE+ ++ELL R+ L + + + Sbjct: 121 NEEKKIQTTSLKIADLELDLLKRKVSRAGHRIDLTSKEFALLELLIQRQGEVLPRMLIAS 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 H++D + + +IDV I +LR K+ ++ K I TV G GYVL +D+ Sbjct: 181 HVWDMNFDSDTNVIDVAIRRLRNKIDDSYTPK-LIHTVRGVGYVLDLREEDD 231 >gi|300868620|ref|ZP_07113234.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300333379|emb|CBN58426.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL +ED+ +A + LK + F V D G++G E+D ++LD+ L G Sbjct: 1 MNILYVEDEAKIASFVCAGLKEQGFVVDYCDNGDEGYLRAMDNEYDVLVLDIMLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L++LR + + PV +L+ + ++D++ GL GADDY++KPF EEL+ARI A++RR Sbjct: 61 AILKSLRRSGRNVPVILLTARNELDDRLEGLNLGADDYLAKPFFVEELIARIHAVIRRVS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+++ G L ++ + V + LT +E+ ++E L LT+ L H++ Sbjct: 121 GERQNILSLGPLKLDRITRQVTCNQQSVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 P ++DV I ++RKKL GG + IE+V G GY R+ Sbjct: 181 YDFNPTTNLVDVCIQRIRKKLER-MGGASCIESVRGVGYCFRK 222 >gi|328956092|ref|YP_004373425.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328456416|gb|AEB07610.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 221 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 124/219 (56%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I L+ + + V G+ EL +D +ILDL L G Sbjct: 1 MRLLVVEDERDLADAIAEGLRLDGYAVETCADGQMASELLAVESYDLVILDLNLPGKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR + V ILS SS+ D+V GL SGA+DY+ KPF EEL ARIRA+ RS Sbjct: 61 EILRELRESARDIKVLILSARSSVADRVNGLDSGANDYLIKPFAFEELEARIRALTHRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S++ GDL ++ +T+ V I LT KE ++E L L + +++E L+H++D Sbjct: 121 TQAASVLRCGDLRLDTIGRTLRVGSREIALTRKELAVLEHLLLHRGEVVSQEDLLDHIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ V + LRKKL A G + ++T G GY Sbjct: 181 RDANTFSNVVRVHVASLRKKL-RAEVGDDVVKTRIGEGY 218 >gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 226 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 8/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++D+ L I L L+ + + V G +E FD I+LDL L + GF Sbjct: 1 MRVLIVDDEPELREQIALSLRQQQYTVDTAGDGALALEKVFADPFDLIVLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + TPV +L+ ++ +V+GL GADDY+ KPF+ EL+ARIRA++RRS Sbjct: 61 TVLRELRAEGVKTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G++ ++ + + V + + LT KE+ ++E L +N +++ H++ Sbjct: 121 EQISPVLTIGNIRLDTNTRIVTLDNQPVSLTPKEFSLLEFLFYNRNRAISRFTMAEHVWG 180 Query: 181 GRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +P IDV I +RKKL N GG+ I TV G GY+ AKDE Sbjct: 181 DAFDPFTMSNNIDVHIKNVRKKL-NDQGGR-IIVTVRGVGYM----AKDEQA 226 >gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G +G++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|56540667|gb|AAV92787.1| PmrA [Salmonella enterica] gi|56540669|gb|AAV92788.1| PmrA [Salmonella enterica] Length = 222 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAERSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ ++G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELAVGNLTLNMGRHQAWIEGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|255319016|ref|ZP_05360238.1| transcriptional regulatory protein QseB [Acinetobacter radioresistens SK82] gi|255303921|gb|EET83116.1| transcriptional regulatory protein QseB [Acinetobacter radioresistens SK82] Length = 221 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ++L+EDD +AHSI L N +V + D +LDLGL D G Sbjct: 1 MFVVLVEDDPYIAHSICAALDFLNISVEHVSTASAADYFIRHSAVDLCLLDLGLPDQDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R +I TP+ +L+ + L GADDY++KPF +ELVAR+ A+ RR R Sbjct: 61 ELLRKWRQDQIHTPILVLTARIQTRQCIEALNLGADDYLTKPFELDELVARLHALTRRHR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +++ DLS+N D + V Q I L+ +EY ++E L N L E L+ LY Sbjct: 121 GFSSNVLQFEDLSLNQDTQEVFYQHQAIQLSRREYSLLETLMSHPNQILKNEQLLDKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D E ++V I LR+KL+ ++I+T+ G GY+ + Sbjct: 181 YQDSIESNALNVHIYHLRQKLN-----ADFIQTIRGVGYMFK 217 >gi|46202620|ref|ZP_00052911.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 225 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 129/227 (56%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD A + L+ + G DG+ L +DA+I+D L + G Sbjct: 1 MRILLIEDDSEAAAYMAKGLREAGHVIDHAATGTDGLFLATSERWDAMIIDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +++ALR A +TPV +LS + ++D+VRGL++G DDY+ KP+ EL+ARI A+ RR S Sbjct: 61 SIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEALSRRVS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + DL ++L A+ V G I L +E++++E L +T+ M L +++ Sbjct: 121 STQPETRLKVEDLEMDLLARAVTRGGQEIDLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222 + +P+ +IDV I +LR+K+ K++ I TV G GY LR Sbjct: 181 EYHFDPQTNLIDVHISRLRQKVD-----KDFELPLIHTVRGAGYTLR 222 >gi|78776518|ref|YP_392833.1| two component transcriptional regulator [Sulfurimonas denitrificans DSM 1251] gi|78497058|gb|ABB43598.1| two component transcriptional regulator, winged helix family [Sulfurimonas denitrificans DSM 1251] Length = 224 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 134/223 (60%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ +A I+ L+ E+++V VT G + I L + +D ++LDL + + G Sbjct: 1 MRILVVEDDEKIASFIKKGLQEESYSVDVTSNGYEAIYLVETNSYDIVLLDLMIHGLGGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + +R I+TP+ +L+ +I+DKV GL GA+DY++KPF+ EEL+ARIR+ + R+ Sbjct: 61 DVCKNIRGKNIATPIIMLTARDAIKDKVEGLDCGANDYLTKPFSFEELLARIRSKL-RTT 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S I DL++N + V+ +I+LT KEY ++E L+ L++ + +L D Sbjct: 120 STLSSTIAIADLTINTARREVKRGDKKINLTAKEYALLEYLARNSKKLLSETIIKENLSD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I++V+I +LR K+ K I TV G GY+L E Sbjct: 180 MAEVSMSNIVNVYIYRLRNKIDKDYEPK-LIHTVRGLGYMLSE 221 >gi|114569494|ref|YP_756174.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339956|gb|ABI65236.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 128/223 (57%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ A I L+ GE+G+E+ + E+D +++D + + G Sbjct: 1 MRILIVEDDREAASYIRKGLRESGHVADHAGDGEEGLEMARAAEYDVLVVDRMMPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119 ++ ALR TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ A+ RR Sbjct: 61 SMVEALRADDDRTPVLILSALGEVDDRVEGLKAGGDDYLVKPYAFAELLARVEALARRRD 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ +V GDL ++L A+TV +G I L +E++++E L +T+ M L ++ Sbjct: 121 PDTVRTKLVVGDLEMDLLARTVIREGEDILLQPREFRLLEFLMKHSGQVVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ ++ + TV G GY L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKPF-PRSLLHTVRGAGYRLQ 222 >gi|239818155|ref|YP_002947065.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239804732|gb|ACS21799.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA ++ L++ V +V + + L EFD +ILDLGL ++ G Sbjct: 1 MRILIAEDDQVLADALLRSLRTSGAAVDHVANGSQADTALMTHSEFDLLILDLGLPNLHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+L+ LR PV +L+ S+E++V+GL GADDY++KPF+ +EL AR+RA+ RR Sbjct: 61 IEILKRLRARGSQLPVLVLTAADSVEERVKGLDHGADDYMAKPFSLQELEARVRALTRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + I G L + + + G + L+ +E ++E+L R ++K+ + L Sbjct: 121 MGATSNTIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E + I+V+I +LRKK+ G I TV G GY L Sbjct: 181 EWGEEVSLNAIEVYIHRLRKKIEK---GPVRIATVRGLGYCL 219 >gi|160896539|ref|YP_001562121.1| two component heavy metal response transcriptional regulator [Delftia acidovorans SPH-1] gi|160362123|gb|ABX33736.1| two component heavy metal response transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 232 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ LA + L E F V V G DG+ L +D I+LD L I G Sbjct: 4 MKVLVIEDEIKLADYLRKGLTEEGFVVDVAHDGIDGLHLATELAYDLIVLDGMLPGIDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR ++ TPV +L+ +ED+VRGLQ GADDY+ KPF ELVAR+ ++RRS Sbjct: 64 AVLAALRQSR-QTPVLMLTARGQVEDRVRGLQGGADDYLVKPFAFSELVARMHVLLRRSV 122 Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A +++ DL ++L + G R+ LT KE+ ++ LL R+ L++ Sbjct: 123 GTAHPAAEATMLRMADLELDLIRRRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELA 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++D + E +++V + +LR KL + + TV G GYVL A Sbjct: 183 SQVWDMNFDSETNVVEVAVRRLRLKLDQPF-EQPLLHTVRGMGYVLESRA 231 >gi|254490732|ref|ZP_05103915.1| response regulator receiver domain protein [Methylophaga thiooxidans DMS010] gi|224463904|gb|EEF80170.1| response regulator receiver domain protein [Methylophaga thiooxydans DMS010] Length = 219 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 12/226 (5%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDIPGF 60 +L+EDD L +++ L F TDL EDGI+ + +D I+LDLGL G Sbjct: 1 MLVEDDPVLGPNLQSALNKSGF---ATDLSEDGIDGEAMGDIEPYDLIVLDLGLPGQSGL 57 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R + +TPV IL+ + EDKV G ++GADDY++KPF EEL+ RI A++RRS Sbjct: 58 EVLKNWRQRENATPVIILTARDAWEDKVLGFKAGADDYLAKPFQTEELLVRINAVLRRSS 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + + L ++ ++V ++ G + LTG E++++ L + L+K H+Y Sbjct: 118 GLSPGTLNSDGLILDESKQSVTLKSGENLALTGTEFKLLRYFMLHRGKLLSKTTLTEHVY 177 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +++V++ +LR+KL G + I T G+GYV ++ Sbjct: 178 QLDSDKDSNVMEVYVNRLRQKL-----GPDLIHTRRGQGYVFGNDS 218 >gi|322834357|ref|YP_004214384.1| transcriptional regulator [Rahnella sp. Y9602] gi|321169558|gb|ADW75257.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 228 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDDK + I+ L F + + TD G G +DA+ILDL L + G Sbjct: 1 MRILLIEDDKMIGDGIKAGLAKLGFTLDWFTD-GLTGKAALDSAPYDAVILDLSLPGMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++LR R A TPV IL+ ++E +V GLQ+GADDY+ KPF E+ AR++A++RR Sbjct: 60 MQLLREWRKAGRDTPVLILTARDALEQRVGGLQAGADDYLCKPFALVEVAARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + G + + A++V + G + LT +E ++EL K L + + LY Sbjct: 120 HGVITPKVTHGAVEFDPAARSVTLNGEAVTLTPREVTVLELFLRNKGRVLARTLIQEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DE ++V I LR KL GK +I TV G GY L + K Sbjct: 180 SWEDEVSSNAVEVHIHHLRSKL-----GKGFIRTVHGVGYTLGDEIK 221 >gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 226 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ++ + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-SRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|297537263|ref|YP_003673032.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297256610|gb|ADI28455.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 221 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L + LK F V T G+ + E+ ++LDLGL + G Sbjct: 1 MRVLLVEDDALLGDGVRAGLKQAGFAVDWTQDGQAAKLALETEEYALMVLDLGLPKLSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR A ++ PV +L+ ++ D+V GL +GADDY+ KPF+ +EL+AR+ A++RRS Sbjct: 61 DVLKWLRGANLALPVLVLTARDTVADRVIGLNAGADDYLIKPFDLDELIARLNALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + GD+ + V G + L +E+ + L L ++E HLY Sbjct: 121 GQVTLTLQHGDIELTPSTHQVSKNGQIVELAAREFSLFHELLLHAGRVQSREQLEQHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225 +E E ++V I LRKKL +A I T+ G GYV+ +E+A Sbjct: 181 WGEEVESNSVEVHIHHLRKKLGSA-----LIRTIRGVGYVIDKESA 221 >gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 221 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A + L + F V V + G+ E FD ++LD+GL + GF Sbjct: 3 RILVAEDEPRIAAFVNKGLTANGFTVTVVEDGQAAYEYALTGSFDLMVLDIGLPGMDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV IL+ S++D V GL+ GADDY+ KPF EEL+AR+R + R Sbjct: 63 VLRKLRAERCPIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARVRLRLVSDRS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ G L ++L + V G + L+ +E+ + E L++E L+ ++ Sbjct: 123 QEPTVLTYGGLQLDLRTRRAHVGGETVDLSAREFALAETFLRHPGQVLSREQLLSQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P ++DV++ LR+KL G + I TV G GY L E Sbjct: 183 DFDPGSNVVDVYVRYLRRKL-----GADRITTVRGMGYRLEER 220 >gi|229101700|ref|ZP_04232417.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228681648|gb|EEL35808.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 224 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E ++V G D ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I+L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDRVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221 >gi|271501164|ref|YP_003334189.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270344719|gb|ACZ77484.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 231 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 133/223 (59%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + I L + V + G +G+ L Y++DAIILD+ L G+ Sbjct: 1 MRLLLVEDEEKTSSYIYRALSELGYMVDIAADGIEGLHLAVQYDYDAIILDVMLPGKDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL LR+ K TPV +LS S++++V+GL+ GADDY+SKPF+ ELVARI+A++RR Sbjct: 61 SVLEGLRLHK-QTPVLMLSARGSVDERVKGLRHGADDYLSKPFSLIELVARIQALLRRRV 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S G + + D+ ++L A+ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 SDGADVTQLHIDDMHLDLLARRVTRAGQRLELTAKEFALLSLLARHQGEILSKMMIAEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +++V + +LR K+ K + TV G GYVL Sbjct: 180 WDMNFDSDANVVEVAVKRLRAKVDTPYTVK-LLHTVRGMGYVL 221 >gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] Length = 225 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 133/221 (60%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ L++EDD+ L ++E + E F V + G ++ K +D IILD+ + I G Sbjct: 3 LKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGV 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + LR+ P+ +L+ S +EDK+ GL++GADDYI+KPF+ +EL+ R++ ++RR Sbjct: 63 KVCKQLRLQS-EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYN 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + IV DL+++L V +G I+LT KE++++++L+ N T+ +E+ LN ++ Sbjct: 122 KVQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+DV+I +R KL + I T+ GRGY+L Sbjct: 182 IASDYDSNIVDVYIKNIRNKLEDKPP--KLILTIRGRGYML 220 >gi|85058937|ref|YP_454639.1| DNA-binding transcriptional regulator BasR [Sodalis glossinidius str. 'morsitans'] gi|84779457|dbj|BAE74234.1| two-component system response regulator [Sodalis glossinidius str. 'morsitans'] Length = 222 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+IL+IEDDK L ++ L+ E+F ++LG+ L + IILDLGL D G Sbjct: 1 MKILVIEDDKLLREGLQQALEQESFACECASNLGQ-SWPLLTSTTYSLIILDLGLPDGDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L LR PV IL+ +I+++VRGL GADDY+ KPF EL+AR RAI+RR Sbjct: 60 MTLLEKLRRQGNGVPVLILTARDAIDERVRGLDFGADDYLIKPFALSELLARSRAIIRRH 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + +L+ D+S++L V V G + LT KE+ ++ L LR + +E+ LY Sbjct: 120 QGVSNNLLWVDDISLDLTHHDVTVDGKAVILTPKEFAILSRLMLRAGHRIHREILHQDLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+P ++V I LR+K+ G+ I+T+ G GY+L Sbjct: 180 SWDDDPSSNSLEVHIHHLRQKI-----GRGRIQTLRGFGYLL 216 >gi|327474015|gb|EGF19428.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 224 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVTQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++VNL + G + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDVTVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + V +++V++ K+RKKL A KN + T+ GY+L++ Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTAFAKN-LHTLRSVGYILKD 222 >gi|298243521|ref|ZP_06967328.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556575|gb|EFH90439.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 240 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 131/231 (56%), Gaps = 15/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++ + H + L LK + G DG+ L D ++LD+ L I GFE Sbjct: 4 KILIIEDEEGIIHLLNLYLKDAGYLTIAARDGADGLALHAREHPDLVVLDIMLPAIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R A TP+ +L+ S+ +D++ GL+ GADDY+ KPF+ ELV+R+RAI+RR Sbjct: 64 VCRRIR-AWSQTPILMLTARSAEDDRINGLELGADDYLLKPFSPRELVSRVRAILRRIPS 122 Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 ++ +S++ LSV+L A+ VEVQG + LT E+ ++ L++ + Sbjct: 123 SQEATPASKETKEDEKSVLRFPGLSVDLLARRVEVQGREVALTPTEFDLLALMAQSPDRV 182 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 T+E+ +N ++ + IDV I LRKK+ A + YI+TVW GY Sbjct: 183 FTREILMNKVWGYDYLGDGHTIDVHISALRKKI-EAGEQQRYIKTVWRVGY 232 >gi|157146841|ref|YP_001454160.1| DNA-binding transcriptional activator CusR [Citrobacter koseri ATCC BAA-895] gi|157084046|gb|ABV13724.1| hypothetical protein CKO_02615 [Citrobacter koseri ATCC BAA-895] Length = 232 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 6 MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIMLPDVNGW 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 66 DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL+++L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 126 AVMVESQFQVADLTLDLVSRKVTRNGMRITLTSKEFTLLEFFVRHQGEVLPRSLIASQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GYVL Sbjct: 186 DMNFDSDTNAIDVAVKRLRAKIDNEFEPK-LIQTVRGVGYVL 226 >gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 129/223 (57%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +++DD+ + + L E + V + + G++G++L + D +ILD+ + + G+E Sbjct: 4 RIFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSDPDLLILDVMMPQMDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V R +R A PV +L+ M ++D+V+GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 64 VCRRVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRRKPD 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + D++++LD++ G RI LT KE+ ++ L LT++ ++ ++ Sbjct: 124 RQETDGRLQFEDMTLDLDSREAIRGGRRIDLTAKEFDLLHLFMQNPRRVLTRDSIMDKIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++V+I LR+K + K I+TV G GYVLR Sbjct: 184 GYDYSGESNVLEVYIAMLRQKTEDGT-AKRLIQTVRGTGYVLR 225 >gi|126668450|ref|ZP_01739406.1| DNA-binding response regulator [Marinobacter sp. ELB17] gi|126627067|gb|EAZ97708.1| DNA-binding response regulator [Marinobacter sp. ELB17] Length = 221 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 19/231 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 MR+LL+ED L +++ + + V D ++ F E ++ I+LDL Sbjct: 1 MRVLLVEDTTGLGEAVQDQISEDGHAV-------DWVQSLAFAETSVKTTPYNLILLDLM 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D GF+ L+ LR +TPV IL+ + D++ GL +GADDY+ KPF+ EL AR+ Sbjct: 54 LPDGHGFDFLKKLRATGDTTPVIILTARDQVSDRITGLNAGADDYLVKPFDLSELSARVA 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A+ RR RG+ L+ GDL V+L + ++ G + LT +E+ + E R L++ Sbjct: 114 AVARRYRGNPNPLVRVGDLEVDLADRRIDRNGQPVELTAREWALFEGFLQRPGILLSRAQ 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + LY+ E E I+V+I ++RKKL G + I TV G GY L N Sbjct: 174 LEDRLYEFGAEIESNTIEVYISRMRKKL-----GHDAIVTVRGMGYRLEPN 219 >gi|323351770|ref|ZP_08087424.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|322122256|gb|EFX93982.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] Length = 224 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++VNL + G + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDVTVNLSTNSTLKDGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + V +++V++ K+RKKL A KN + T+ GY+L++ Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTAFAKN-LHTLRSVGYILKD 222 >gi|167839158|ref|ZP_02465935.1| response regulator protein [Burkholderia thailandensis MSMB43] Length = 240 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 134/237 (56%), Gaps = 15/237 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD LA I L S F+V V G+ + + ++ +ILDL L + G E Sbjct: 9 RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + PV IL+ S + D+V GL++GADDY++KP LVAR+RA++RR++ Sbjct: 69 VCRRIR-GFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARVRALLRRAQP 127 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A +V G+L+++ +TV +G + L E+ ++ +L+ T L+++ L Sbjct: 128 GASVESPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARSAGTVLSRDDIL 187 Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L +DG D + +D I KLR++ +A+ + I+T+WGRGY+ +A D+ Sbjct: 188 KQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240 >gi|53716767|ref|YP_105784.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC 23344] gi|167722921|ref|ZP_02406157.1| DNA-binding response regulator TctD [Burkholderia pseudomallei DM98] gi|167741901|ref|ZP_02414675.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 14] gi|167819082|ref|ZP_02450762.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 91] gi|167827467|ref|ZP_02458938.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 9] gi|167848936|ref|ZP_02474444.1| DNA-binding response regulator TctD [Burkholderia pseudomallei B7210] gi|167897542|ref|ZP_02484944.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 7894] gi|167905895|ref|ZP_02493100.1| DNA-binding response regulator TctD [Burkholderia pseudomallei NCTC 13177] gi|167914202|ref|ZP_02501293.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 112] gi|167922113|ref|ZP_02509204.1| DNA-binding response regulator TctD [Burkholderia pseudomallei BCC215] gi|254179157|ref|ZP_04885809.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC 10399] gi|254189737|ref|ZP_04896246.1| DNA-binding response regulator TctD [Burkholderia pseudomallei Pasteur 52237] gi|254193179|ref|ZP_04899614.1| DNA-binding response regulator TctD [Burkholderia pseudomallei S13] gi|254356588|ref|ZP_04972863.1| DNA-binding response regulator TctD [Burkholderia mallei 2002721280] gi|52422737|gb|AAU46307.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC 23344] gi|148025615|gb|EDK83738.1| DNA-binding response regulator TctD [Burkholderia mallei 2002721280] gi|157937414|gb|EDO93084.1| DNA-binding response regulator TctD [Burkholderia pseudomallei Pasteur 52237] gi|160694484|gb|EDP84494.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC 10399] gi|169649933|gb|EDS82626.1| DNA-binding response regulator TctD [Burkholderia pseudomallei S13] Length = 223 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L S F V GE + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV IL+ S+ED+VRGL GADDY++KPF EL AR RA++RRS Sbjct: 61 DVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + G L+ + ++ + + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL G I T+ G GY+L Sbjct: 181 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 218 >gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 130/229 (56%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +E+ L+SE + V D G D +E + E D I+LD+ L + G E Sbjct: 4 KILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEVDLILLDVMLPGMSGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120 +LR +R T V +L+ SS+EDKV GL GA+DYI+KPF EEL+ARIRA +R + + Sbjct: 64 LLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQGK 123 Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H A + DL +N + V G RI LT +E+ ++ L K L +E L Sbjct: 124 PHPEEEPAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQIL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++DV+I +RKK+ + G + I TV G GYVL+E Sbjct: 184 AAVWGYDYYGDTNVVDVYIRYVRKKI-DYGGTQELIHTVRGVGYVLKET 231 >gi|33597212|ref|NP_884855.1| two-component response regulatory protein [Bordetella parapertussis 12822] gi|33573639|emb|CAE37924.1| two-component response regulatory protein [Bordetella parapertussis] Length = 229 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 125/238 (52%), Gaps = 12/238 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRIL+ EDD L + +S N Y D DG+ FD +ILDLGL + Sbjct: 1 MRILIAEDDSILTDGLS---RSLRHNGYAVDAVRDGLAADSALAVQPFDLLILDLGLPHL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 PG EVLR LR PV IL+ SIE +V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 PGLEVLRRLRARNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +++ G L + + V + L+ +E ++E+L R ++K ++H Sbjct: 118 RGAGGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLARSGRMVSKTQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 L + + I+V++ +LRKKL +G K I TV G GY L +D+ YL + Sbjct: 178 LCEWGEAVSTNAIEVYVHRLRKKL-EPSGVK--IITVRGLGYCLE---RDQGASYLAS 229 >gi|239816259|ref|YP_002945169.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239802836|gb|ACS19903.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 224 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 129/228 (56%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD ALA ++ L ++ F V V D ++ A++LDL L D G Sbjct: 1 MRILLVEDDSALADAVCSYLVAKAFVVDVAPSLADARSALLSVQYAAVLLDLHLGDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R + V +L+ + D++RGL +GADDY+ KP++ EL+AR+RA+ RR Sbjct: 61 SLLPQVRALREPPIVIVLTARDQVTDRIRGLDAGADDYLIKPYDPAELLARLRAVERRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G L ++L V G+ + LT KE+ ++ +++ R T+E + LY Sbjct: 121 AGSSPVLHLGTLEIDLAHDRVRKDGNPVVLTQKEWALLRVMATRPERIHTRENLADALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DE + ++VFI +LR+KL GKN+I+T+ G GY L ++ D+ Sbjct: 181 FGDEADSNTLEVFISRLRRKL-----GKNHIQTLRGLGYRLSTSSGDD 223 >gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 226 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ LA +EL L SE + V V G G+ L + D ILD L + G E+ Sbjct: 5 ILLVEDEVKLARFVELELSSEGYQVSVAHDGIAGLTLARDSSPDLAILDWMLPGLTGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + PV +L+ + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++ Sbjct: 65 CRRLRATGSTVPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQET 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A+ L+ DLS+N + V + I LT KE+ ++E L T++ L ++ Sbjct: 125 AEDLLQFEDLSLNRRTREVFREKRSIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWGYD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + II+V+I LR KL K I TV G GY LRE + Sbjct: 185 FMGDSNIIEVYIRYLRLKLEE-NNEKRLIHTVRGVGYALREQS 226 >gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. Spyr1] gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. Spyr1] Length = 250 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 123/229 (53%), Gaps = 13/229 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ LA + L+ E F V V G D I + + + D +ILD+GL I G E Sbjct: 18 RALVVDDELPLAEVVASYLEREQFEVVVAANGVDAIAVARDLDPDVVILDIGLPSIDGLE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + +L+ + D V GL GADDYI+KPF+ ELVARIRA++RR R Sbjct: 78 VCRQLRTFSDAY-IVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPR- 135 Query: 122 HAQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 QS T G LS+N+ A+ V + G +I LT E+ ++E LS R L+ Sbjct: 136 VLQSATATAEIALAPPRRFGPLSINVAAREVSIDGEQILLTRTEFDILEALSGRPGNVLS 195 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L + DG ++DV I LR+KL + A YI TV G GY Sbjct: 196 RRQLLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGY 244 >gi|222153107|ref|YP_002562284.1| response regulator protein [Streptococcus uberis 0140J] gi|222113920|emb|CAR42131.1| response regulator protein [Streptococcus uberis 0140J] Length = 224 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 131/224 (58%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+EDD +L++SI L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKLLLVEDDLSLSNSIFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I TPV I++ +I+DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKDIKTPVLIMTAKETIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI G++ V+ D V V I L GKEY+++ +N L K + ++ Sbjct: 121 KFNNNLIRYGNIQVDTDRNMVTVNQENIELLGKEYELLIYFLQNQNVILPKSQIFDRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++V+I K+RKKL + N ++T+ GY+L+ N Sbjct: 181 FDSDTTISVVEVYISKIRKKLKSTDFATN-LQTLRSVGYILKSN 223 >gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061] gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061] Length = 228 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 133/224 (59%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K +A + L L+ E + V V + G DG++ + FD ++LD+ L ++ G E Sbjct: 5 KILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEESFDLVLLDVMLPELSGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 VLR +R +TP+ +++ S+ DKV GL GA+DYI+KPF+ EEL+ARIRA +R Sbjct: 65 VLRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNIH 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ ++ + DL+VN + ++ G + LT +E+ ++ L + LT++ L + Sbjct: 125 AQEEKETELSIADLTVNEKTRDIQRAGQMLELTPREFDLLVHLLKHQQQVLTRDQLLTAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I LRKK+ + K I TV G GYV++ Sbjct: 185 WGFDYFGDTNVVDVYIRYLRKKV-DYPFEKQLIHTVRGVGYVMK 227 >gi|239834923|ref|ZP_04683251.1| two-component response regulator [Ochrobactrum intermedium LMG 3301] gi|239822986|gb|EEQ94555.1| two-component response regulator [Ochrobactrum intermedium LMG 3301] Length = 280 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED +A +I L+ E +V G G +L FD I+LD+ L GF Sbjct: 56 MRILLVEDTIDIAFAIASKLEKEGHSVTTAYDGVQGEDLAVNGSFDLIVLDINLPGRDGF 115 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR++R +S PV +++ + I DK+ L+ GADDY+ KPF+ EL ARIRA+ RR Sbjct: 116 AILRSMREQSLSCPVLVITARNQIADKIDLLELGADDYLVKPFDLRELFARIRAVARRHM 175 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ ++ G+LS+NL ++V + +E+ ++E+L+ R N T+ K+M + L+ Sbjct: 176 GVAQPVLRIGELSINLTQRSVMQGDGPLDFGRREFDVLEMLATRFNVTVPKDMLVLKLFG 235 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D I++ + ++RKKL ++ I T G GY+LR A Sbjct: 236 HEDTGTPNAIELLVSRVRKKLEHSTV---EIVTQRGVGYLLRLKAP 278 >gi|85710480|ref|ZP_01041544.1| putative transcription regulator protein [Erythrobacter sp. NAP1] gi|85687658|gb|EAQ27663.1| putative transcription regulator protein [Erythrobacter sp. NAP1] Length = 250 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 119/220 (54%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL +EDD A ++ + + + + G + FD IILD L DI G Sbjct: 26 LRILYVEDDARSAAAVSELAEQSGDVIVWEEQGSGALLRAGMEAFDVIILDRMLDDIDGL 85 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + I TP+ ILS + D+ GL +GADDY++KPF EEL+AR+RA+ RRS+ Sbjct: 86 TITKRLRESGIGTPILILSALGRSADRTDGLDAGADDYMAKPFEPEELMARLRALHRRSQ 145 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S +I+ G +L A+T + L+ KE+++ T+T+EM L ++ Sbjct: 146 GREHSAVIIYGAFECHLKARTAFRDNRHLALSPKEFELFRYFMENAGETVTREMLLRDVW 205 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P+ ++DV I +LR+KL +ET+WG GY Sbjct: 206 KMDFDPQTNVVDVNIGRLRRKLEEGFDAPA-LETIWGSGY 244 >gi|226309940|ref|YP_002769834.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092888|dbj|BAH41330.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 129/227 (56%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL +ED+KAL +I +L E + V + D G+DG+ L + +D ++LD+ + + G Sbjct: 1 MLILAVEDEKALLQTIAGVLADEGYQVDMADRGDDGLLLAERGIYDLLVLDIMMPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 ++R LR I TPV L+ S+E +V GL +GADDY+ KPF EEL AR+RA++RR Sbjct: 61 SLVRTLRTKGIMTPVLFLTAKDSVESRVEGLDAGADDYLVKPFAAEELTARVRALLRRQG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + + G LS+ ++ V + LT KEY++++ + LT++ + ++ Sbjct: 121 KQNTEGELAYGPLSLKINEYDGFVDDEPMKLTTKEYELLKYFLQNREQILTRQQIFDRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E ++D+++ LRKKL G +I T+ GY+L++ K Sbjct: 181 GIDSEANYGVVDLYVHYLRKKLGAYEG---FIRTIRNVGYILKKENK 224 >gi|296159315|ref|ZP_06842141.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295890574|gb|EFG70366.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 219 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + IE L+ F V + D + G+ L + ++LDLGL + G Sbjct: 1 MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLALDTTV-YALVVLDLGLPRVSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+L+ LR + PV +L+ S++ D+V GL++GADDY+ KPF+ EL+AR RA++RR+ Sbjct: 60 MELLKRLRDSGKDVPVLVLTARSTVLDRVGGLEAGADDYLGKPFDLTELIARCRALLRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + I DL+VN A+TVEV R+ LT +E+ ++ L + ++ LY Sbjct: 120 QGRSVEQIRYLDLTVNPAAQTVEVGTRRVPLTSREWAILLQLLTNQGIPQSRSRLEESLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E E I+V + LRKKL G I+TV GYV+ Sbjct: 180 GWQEEIESNAIEVHVSNLRKKL-----GAKLIKTVRNIGYVM 216 >gi|157147945|ref|YP_001455264.1| DNA-binding transcriptional regulator BasR [Citrobacter koseri ATCC BAA-895] gi|157085150|gb|ABV14828.1| hypothetical protein CKO_03752 [Citrobacter koseri ATCC BAA-895] Length = 222 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 124/228 (54%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHCLETGHYSLVVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L +NL + V + G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHHNQGESELTVGNLMLNLGRRQVWLAGQELILTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|158319376|ref|YP_001511883.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139575|gb|ABW17887.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 224 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 130/225 (57%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+K LA ++ +LK + V GEDG++ +D IILD+ L + G Sbjct: 1 MKVLLVEDEKHLAEALLQILKKNKYTVDGVYNGEDGLDYALTGIYDVIILDIMLPKLSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+++R KISTPV +L+ S + D+V+GL GADDY+ KPF+ EEL+AR+RA+ RR + Sbjct: 61 EILKSIRKKKISTPVLLLTAKSEVSDRVKGLDLGADDYLPKPFSTEELLARLRALTRR-K 119 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + + + S+NL +E + + L KE ++++ LR + KE + + Sbjct: 120 GEVINEDTLSFSNFSLNLSTYLLEGEKTSVRLALKEVEILKYFMLRPRIIVNKEDLIIKV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E E I+V+I LRKKL + I T+ G GY L E Sbjct: 180 WGYESEAENNNIEVYISFLRKKLQYIE-ARAKITTIRGVGYKLEE 223 >gi|325521268|gb|EGD00144.1| OmpR family two-component system response regulator [Burkholderia sp. TJI49] Length = 206 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 124/206 (60%), Gaps = 2/206 (0%) Query: 20 LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 L ++ V V + G+ G+ L FD ++LD+ L ++ GFEVL+ LR K TPV +L+ Sbjct: 3 LTEASYTVDVAENGKIGLFLALHENFDLVVLDVMLPELDGFEVLKRLRAEK-QTPVLMLT 61 Query: 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAK 139 +IEDKV GL+ GADDY+ KPF E +ARIR+++RR+ + +++ D+ ++L + Sbjct: 62 AREAIEDKVAGLELGADDYLHKPFAYAEFLARIRSLLRRAPRSIRDILLVADMEIDLLKR 121 Query: 140 TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRK 199 V +RI LT +E+ +++LL+ R+ LT+ + ++D + + ++D I +LR Sbjct: 122 RVRRGDNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDMNFDSDTNVVDAAIKRLRA 181 Query: 200 KLSNAAGGKNYIETVWGRGYVLRENA 225 K+ NA K I T+ G GYVL + + Sbjct: 182 KVDNAY-DKKLIHTIRGMGYVLEDRS 206 >gi|167578439|ref|ZP_02371313.1| DNA-binding response regulator TctD [Burkholderia thailandensis TXDOH] gi|167616577|ref|ZP_02385208.1| DNA-binding response regulator TctD [Burkholderia thailandensis Bt4] gi|257143082|ref|ZP_05591344.1| DNA-binding response regulator TctD [Burkholderia thailandensis E264] Length = 223 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L S F V GE + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+VRGL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + G L + ++ + + LT +E ++E+L LR + KE ++ Sbjct: 121 GHDHVRVECGPLEFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL G I T+ G GY+L Sbjct: 181 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 218 >gi|127511517|ref|YP_001092714.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126636812|gb|ABO22455.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 224 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 12/227 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L + LK + VTD + L K +D +ILD+GL D G Sbjct: 1 MKLLLVEDNTLLVDELAKQLKQAGYVTDVTDRAAEADYLIKETHYDCVILDIGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L R I TPV +L+ S +KV G +GADDY+ KPF+ +EL+ARI A++ R+ Sbjct: 61 QLLETWRNQGIDTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHSQELLARIHALINRAH 120 Query: 121 GHAQSLIVTGDLS---VNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G S T +LS V LD ++V V + LT E++++++ + L+K Sbjct: 121 GKTNS--PTKELSFEGVTLDESQQSVTVGEQQFELTAMEFRLLKIFLMSPKKLLSKAQLT 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 179 DKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220 >gi|269794181|ref|YP_003313636.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096366|gb|ACZ20802.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 227 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 18/226 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD A+A + L E +NV V G+ I+ D ++LDLGL D+ G EV Sbjct: 4 VLLAEDDPAIAEPLARALSREGYNVVVQGTGQGAIDNASVA--DLVVLDLGLPDMDGLEV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 RA+R ++TPV +L+ + D V GL +GADDY++KPF EL+AR+RA++RR+ G Sbjct: 62 ARAIRGLGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHGD 121 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEM 173 HAQ D+ V++ A QG R +HLT KE++++ +L T + ++ Sbjct: 122 PTEAEELHAQ------DVKVDVAAHRA-FQGERELHLTTKEFELLRVLVQGAGTVVVRDA 174 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ K +D+ + LR+KL + A YI TV G G+ Sbjct: 175 LMREVWGSEPIGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGLGF 220 >gi|293604304|ref|ZP_06686711.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292817181|gb|EFF76255.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 127/238 (53%), Gaps = 12/238 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL+ EDD LA + +S N Y D DG+ FD +ILDLGL + Sbjct: 1 MRILIAEDDSILADGLS---RSLRHNGYAVDAVRDGLAADSALAAQAFDLLILDLGLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR LR + PV IL+ SIE +V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 AGLEVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +++ G L + + V + L+ +E ++E+L R ++K ++H Sbjct: 118 RGAGGGATMLKHGRLLFDQTGRVAIVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 L + +E I+V++ +LRKKL +G K I TV G GY L +D+ YL + Sbjct: 178 LCEWGEEVSTNAIEVYVHRLRKKL-EPSGVK--IVTVRGLGYCLE---RDQGAAYLAS 229 >gi|119944977|ref|YP_942657.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] gi|119863581|gb|ABM03058.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] Length = 218 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L S+ + L + V LG + F AIILDL L D G Sbjct: 1 MRILLVEDDVMLGESMVVSLIRHGYTVDWLQLGAAVEMTLRTENFTAIILDLTLPDADGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +R A P+ IL+ I+D+V+GL GADDY+ KPF +EL+AR+R IVRR Sbjct: 61 DILSQVRKAGHKLPILILTARDDIDDRVKGLDGGADDYLLKPFALQELLARLRVIVRRVS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A+S I L ++L TVE G I LT E++++ L + L+KE LY Sbjct: 121 GYAESKIELHGLVISLAKNTVEYHGAAIKLTNTEFKLLTTLVTKAGRVLSKEYLQQTLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I+V+I LRKK++N I+ + G GY++ + Sbjct: 181 WDEMASDNAIEVYIHNLRKKINN-----QLIKNIRGVGYIIEK 218 >gi|254524591|ref|ZP_05136646.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] gi|219722182|gb|EED40707.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] Length = 219 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD AL + +L+ + V+ G E+ + + A I+DLGL + G Sbjct: 1 MRILLAEDDAALVQRLVPLLEQAGYVVHTVADGRHAEEIGQVEDLQAAIVDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ R S PV +L+ DK+ G +GADDY++KPF +ELV R+RA++RRS Sbjct: 61 SVIERWRGNGRSFPVLVLTARGRWHDKLAGFDAGADDYLTKPFQADELVLRLRALIRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + G L ++++A E+ G + L+ +E++++ + ++++ +++ Sbjct: 121 GHASPRLQCGPLQLDVNAGRFELDGQALALSPQEFRVLSYFIHHSGSVISRDRLGEQVFE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G +P+ +DV + ++R+KL G + I TV G+G+ L E Sbjct: 181 GGYDPDSNALDVLLGRVRRKL-----GTDLIHTVRGQGWRLAE 218 >gi|197301860|ref|ZP_03166929.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC 29176] gi|197299090|gb|EDY33621.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC 29176] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ E V GE+ +E K E+D ++LD+ L + GF+ Sbjct: 4 KILVVDDEKLIVKGICFSLEQEGMEVDCAYDGEEALEYAKKCEYDLVLLDVMLPKLDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R PV +L+ S DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIREFS-DMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122 Query: 122 H----AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 AQS ++V G++ ++ + + V + I+LT KE+ ++ELL++ N ++E LN Sbjct: 123 RKEEPAQSPMLVKGNMKIDCEGRRVFIGEKEINLTAKEFDVLELLAMNPNKVYSRENLLN 182 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G D P + + +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 LIW-GYDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYFQ 228 >gi|309800065|ref|ZP_07694260.1| transcriptional regulatory protein CiaR [Streptococcus infantis SK1302] gi|308116316|gb|EFO53797.1| transcriptional regulatory protein CiaR [Streptococcus infantis SK1302] Length = 223 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 131/222 (59%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ISTPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGISTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GDL+VNL V V + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDLTVNLSTNEVRVNDTVVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ K+RKKL + +N ++T+ GY+L+ Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGSVFAEN-LQTLRSVGYILK 221 >gi|302388283|ref|YP_003824105.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198911|gb|ADL06482.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 125/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A + L+ F V + + GE G+ + +FD +ILDL L + GFE Sbjct: 3 RILIVEDEESIAELEKDYLELSGFEVEIENDGEQGLHMALHEDFDLVILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICRKVREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V V G + T KE+ ++ L+ N TKE Sbjct: 122 LIGSGVPDNEIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLVTFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 NKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|94968685|ref|YP_590733.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550735|gb|ABF40659.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 230 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 3/232 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA + L+ E++ V GE + E+D +ILDL L + GF Sbjct: 1 MRILVVEDDAPLAKFVAKGLEEEHYAVDTVHDGEQAKSMACEVEYDLVILDLNLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K P+ +L+G + +ED+VR L GADD + KPF+ EL AR+RA++RR Sbjct: 61 GVLQQVRDHK-RCPILVLTGRTRLEDRVRVLDGGADDCLLKPFSFAELSARVRALLRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 AQ + DL ++ +TV G RI LT KE+ ++E L +T+ M + H+++ Sbjct: 120 SAAQFKLRVADLELDRVQRTVARSGRRIELTSKEFALLEYLMRNAGRRVTRTMIIEHVWN 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDETCE 231 + + ++DV++ LR+K+ + K I TV G GY +R E + C+ Sbjct: 180 LKFDTGTNVVDVYVNYLRRKVDSEFPTK-LIGTVRGVGYEIRPEGVEASVCQ 230 >gi|89902445|ref|YP_524916.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89347182|gb|ABD71385.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 223 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 126/219 (57%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L ++ L+++ + V G DG+ + Y D I+DLGL + G Sbjct: 1 MRLLLIEDDAVLRLGLKRQLEADGYRVDQAGDGADGLFQAREYPLDLAIVDLGLPKVNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR + P+ IL+ S +DKV+GL++GADDY+ KPF EL AR++A++RRS Sbjct: 61 TVVQTLRAEGRTLPILILTARGSWQDKVQGLEAGADDYLVKPFEYPELAARVKALLRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ ++ + + LT EY+++E L + + K+ ++LY Sbjct: 121 KATSDVLTLGALRIDFSGQSARLHDVPLQLTTFEYRVLEYLVRERARVVPKQELSDYLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +++V I +LR+KL + G IET+ GRGY Sbjct: 181 HDEDRDSNVLEVLIGRLRRKL-DPDGTLLPIETLRGRGY 218 >gi|319776032|ref|YP_004138520.1| transcriptional regulatory protein QseB [Haemophilus influenzae F3047] gi|329123190|ref|ZP_08251759.1| two component response regulator [Haemophilus aegyptius ATCC 11116] gi|317450623|emb|CBY86843.1| transcriptional regulatory protein QseB [Haemophilus influenzae F3047] gi|327471535|gb|EGF16979.1| two component response regulator [Haemophilus aegyptius ATCC 11116] Length = 220 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 8/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + + +++ L + F V + TD G+ G+ +DA++LDL L + G Sbjct: 1 MRILLIEDDNLIGNGLQIGLTTLGFAVDWFTD-GKTGMAALTSAPYDAVVLDLTLPKLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ R PV IL+ +++++V+ LQSGADDY+ KPF E+ AR++A++RR Sbjct: 60 LEVLQQWRSNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ S+I + ++ + ++V + I LT +EY+++EL L K+ L++ L Sbjct: 120 -GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E +DV I LR+KL GK +I T+ G GY L Sbjct: 179 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTIHGVGYAL 215 >gi|229114545|ref|ZP_04243960.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228668895|gb|EEL24322.1| Two-component response regulator [Bacillus cereus Rock1-3] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E ++V G D ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPRIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I+L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGEQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221 >gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 774 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 118/222 (53%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD+ L + LK+ N+ V + GE G + +E+ +ILD+ L + G Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR PV +L+ S EDKV GL +GADDY+ KP EEL+AR+RA++RR+ Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL++N + Q + LT KEY ++EL + + + HL+ Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I LR KL +A G IE V+G GY ++ Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+ I DD + +E +L V + ++ + D +I+D+ + G ++ Sbjct: 488 IIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDL 547 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R P+ +L+ + E + ++GADD+ISKP EL+AR+ + + RSR Sbjct: 548 CQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSR 607 >gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED++ L + L +E+++V GE ++ E+D +ILD+ + G Sbjct: 1 MRILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R PV +L+ S+ED+VRGL +GA+DY+ KPF EEL+ARIR ++RR Sbjct: 61 SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S G L V++D V G I L+GKE+ ++ + K L++E HL++ Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +IDV+I LRKK+ K I TV G GYVL+E Sbjct: 181 YDYAGGSNVIDVYIRYLRKKIDEPFEEK-LIHTVRGAGYVLKEK 223 >gi|309700427|emb|CBI99718.1| DNA-binding response regulator transcriptional regulator [Escherichia coli ETEC H10407] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A TPV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYETK-LIQTVRGVGYML 221 >gi|260430186|ref|ZP_05784161.1| DNA-binding response regulator [Citreicella sp. SE45] gi|260419109|gb|EEX12364.1| DNA-binding response regulator [Citreicella sp. SE45] Length = 217 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + ++ L + +V + G + + + FD ++LDLGL G Sbjct: 1 MRILLIEDDAIVGDALVKSLGRDRADVVWSRDGLEAEAMLRGGGFDLVVLDLGLPGQDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR TPV +L+ +ED++RGL GADDY+ KPF+ EL+AR RA++RR++ Sbjct: 61 TLLRGLRGRGDVTPVLVLTARDGVEDRIRGLDHGADDYLLKPFDTGELLARCRALLRRAQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G L+V+L A TV + G + L KE++++ L+ R+ + K LY Sbjct: 121 GRGEDRIELGQLTVDLQAHTVTLAGRVLTLPQKEFRLLVYLAERRGRVVPKPQLEQMLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++V++ LR+K+ A+ I T+ G GY++ Sbjct: 181 WDEGAESNTVEVYVSALRRKIGAAS-----IRTLRGVGYMI 216 >gi|209517913|ref|ZP_03266746.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209501629|gb|EEA01652.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 231 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/235 (35%), Positives = 132/235 (56%), Gaps = 13/235 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD LA + +++ E F + GE L +DA++LD+ L I G Sbjct: 1 MKLLLVEDDADLARWVMNLMQVEQFAIDWAQNGECAEALLGQQCYDAVLLDMRLPGIGGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVL LR + + PV +L+ S +DKV +GADDY+ KPF+ ELVARI+A++RR Sbjct: 61 EVLARLRRKRDNVPVLMLTANGSTDDKVACFSAGADDYVVKPFDARELVARIKALIRRQA 120 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RG + G+L D++ +Q R+ L +E+ ++E L L++ T++K ++ Sbjct: 121 AGDRGQSTE---CGNLRYLFDSREFVLQDERLPLRRREHAILEALILKQGKTVSKATLMD 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ +EP ID++I +LRK L A I T+ G GY+LRE +E CE Sbjct: 178 KIFTLDEEPSADAIDIYIHRLRKHL---AASTAKIMTLRGLGYILRE---EEPCE 226 >gi|127511031|ref|YP_001092228.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126636326|gb|ABO21969.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD + + N+ G G+ L ++D +ILD L + G Sbjct: 1 MKILLVEDDATTTEYVVKGFAEQGHNIETASDGHQGLLLATSMQYDLVILDRMLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R +++R + Sbjct: 61 KLLAALRATGNQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 AQ+ + G+L + L + V + G I L KE+Q+++ L N +++ + ++ Sbjct: 121 SAPAQTELKVGELVMELLTRKVTLAGSEILLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGFGE-LIETVRGAGYRLRQG 224 >gi|307299054|ref|ZP_07578856.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915479|gb|EFN45864.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+++L ++ L+ E F + GE+G+ + FD I+LD+ L + G+ Sbjct: 1 MKILIVEDERSLGRLLKESLEREGFVAELAVDGEEGLYMALNGPFDVIVLDILLPKLTGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + PV +L+ + SIEDKVRG GADDY+ KPF+ ELV RI++++RR++ Sbjct: 61 QVLEKIRDSGSRIPVLMLTALDSIEDKVRGFDLGADDYLPKPFDIRELVVRIQSLLRRAQ 120 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++ GDL +++ KT +I L KEYQ++E L L + K HL Sbjct: 121 FGGAPSRVLRVGDLELDMSLKTASRGNEKIELRKKEYQILEYLMLNSGRVVPKSELEEHL 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ DE +I I +RKK+ + K I+TV G GY Sbjct: 181 WNEDDELWSDVIRSHIKNIRKKV-DGGRRKKLIKTVRGMGY 220 >gi|78045027|ref|YP_359462.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997142|gb|ABB16041.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 122/220 (55%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ + ++ +LK+EN++ GE +E FD +ILDL L GF Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL+ ++ + PV IL+ DK+ G G DDY++KPF+ EL+ RI+A++RR R Sbjct: 63 VLKEIK-NREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + I+ G ++VNL + V G + LT KEY ++ELL N TKE ++ L+ Sbjct: 122 GRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + I+ V + +LR+K+ I+TVWG GY Sbjct: 182 PDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGY 221 >gi|325578292|ref|ZP_08148427.1| two component response regulator [Haemophilus parainfluenzae ATCC 33392] gi|325160028|gb|EGC72157.1| two component response regulator [Haemophilus parainfluenzae ATCC 33392] Length = 240 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + + +++ L F V + TD G+ G+ +DA++LDL L + G Sbjct: 19 MRVLLVEDDPLIGNGLQIGLTKSGFIVDWFTD-GQSGLNALIGAPYDAVVLDLTLPKLDG 77 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ R PV IL+ +++++++G+Q GADDY+ KPF E+V R++A++RR Sbjct: 78 LEVLKQWRSNNQDVPVLILTARDTLDERIKGIQQGADDYLCKPFALAEVVVRLQALIRRR 137 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + I G++ ++ + + I LTG+EY+++EL L K L++ L Sbjct: 138 YGQVKPQIEHGNVKLDPAQRKAWLNEDEITLTGREYKLLELFMLNKERVLSRATIEEKLS 197 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E +DV I LR+KL GK +I TV G GY L Sbjct: 198 NWDEELSSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 234 >gi|302669419|ref|YP_003829379.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302393892|gb|ADL32797.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 227 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 135/226 (59%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ +D+ L +++ +LK N+ V G D ++ ++D IILD+ + + G Sbjct: 5 MKLLIADDETELVNALVAILKHSNYTVDAVYNGTDALDYALAGDYDGIILDIMMPGMDGT 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R +STPV L+ + ++D++RGL GADDY+ KPF+ EL+AR+RA++RR Sbjct: 65 EVLKKIREKGLSTPVLFLTAKTEVDDRIRGLDLGADDYLPKPFDMGELLARVRAMLRRKA 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q + G+L+++ + GH +I L+G+E+QM+ELL ++ + F++ ++ Sbjct: 125 DFSQPNLTCGNLTLDRAGYELSTPGHDKIRLSGREFQMMELLMTSPGRIISVDNFMDRIW 184 Query: 180 -DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DG E +V ++ V++ LRKKL+ + I+ G GY + E Sbjct: 185 ADG--EADVNVVWVYVSNLRKKLA-SLDATCEIKASRGLGYSISET 227 >gi|124382081|ref|YP_001023940.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC 10229] gi|126445475|ref|YP_001062036.1| transcriptional regulatory protein TctD [Burkholderia pseudomallei 668] gi|126446503|ref|YP_001078685.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC 10247] gi|126457411|ref|YP_001074988.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1106a] gi|217418642|ref|ZP_03450149.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 576] gi|226195063|ref|ZP_03790654.1| DNA-binding response regulator TctD [Burkholderia pseudomallei Pakistan 9] gi|237510327|ref|ZP_04523042.1| DNA-binding response regulator TctD [Burkholderia pseudomallei MSHR346] gi|238563076|ref|ZP_00439448.2| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse 4] gi|242313060|ref|ZP_04812077.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1106b] gi|251766834|ref|ZP_02265115.2| DNA-binding response regulator TctD [Burkholderia mallei PRL-20] gi|254183073|ref|ZP_04889665.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1655] gi|254200597|ref|ZP_04906962.1| DNA-binding response regulator TctD [Burkholderia mallei FMH] gi|254204618|ref|ZP_04910971.1| DNA-binding response regulator TctD [Burkholderia mallei JHU] gi|254264953|ref|ZP_04955818.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1710a] gi|254300010|ref|ZP_04967456.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 406e] gi|124290101|gb|ABM99370.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC 10229] gi|126224966|gb|ABN88471.1| transcriptional regulatory protein TctD [Burkholderia pseudomallei 668] gi|126231179|gb|ABN94592.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1106a] gi|126239357|gb|ABO02469.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC 10247] gi|147748209|gb|EDK55284.1| DNA-binding response regulator TctD [Burkholderia mallei FMH] gi|147754204|gb|EDK61268.1| DNA-binding response regulator TctD [Burkholderia mallei JHU] gi|157809872|gb|EDO87042.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 406e] gi|184213606|gb|EDU10649.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1655] gi|217397946|gb|EEC37961.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 576] gi|225932868|gb|EEH28864.1| DNA-binding response regulator TctD [Burkholderia pseudomallei Pakistan 9] gi|235002532|gb|EEP51956.1| DNA-binding response regulator TctD [Burkholderia pseudomallei MSHR346] gi|238521412|gb|EEP84864.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse 4] gi|242136299|gb|EES22702.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1106b] gi|243064584|gb|EES46770.1| DNA-binding response regulator TctD [Burkholderia mallei PRL-20] gi|254215955|gb|EET05340.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1710a] Length = 252 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L S F V GE + ++ +ILDLGL + G Sbjct: 30 MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 89 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV IL+ S+ED+VRGL GADDY++KPF EL AR RA++RRS Sbjct: 90 DVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 149 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + G L+ + ++ + + LT +E ++E+L LR + KE ++ Sbjct: 150 GHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 209 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL G I T+ G GY+L Sbjct: 210 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 247 >gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ LA + L LK E + + G G++L ++D I+LDL L ++ G E Sbjct: 3 KVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR K TP+ +++ S+ D+V GL GADDY+ KPF EEL+ARIR+++RR Sbjct: 63 VARRLREVK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +S+I DL + + + I+LT +EY ++ L N ++E L Sbjct: 122 ETETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + +YI+TV G GYV+R Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228 >gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27] gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8] gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27] gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8] Length = 227 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/225 (40%), Positives = 131/225 (58%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59 IL++ED+K +A IEL L++E Y T++ DGI L KF E +ILDL L + G Sbjct: 9 ILIVEDEKDIARFIELELQAEG---YRTEVAHDGITGLSKFREVSPNLVILDLMLPVMDG 65 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV + +R + P+ IL+ +EDKV GL +GADDY+ KPF+ EEL+AR+RA +RR Sbjct: 66 IEVAKRIRKTS-NVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRRV 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I DL +NL+ + V RI L+ KE++++ELL+ ++ ++ Sbjct: 125 TPAITGEIRVADLIINLEGREVFRGNRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G + ++DV+I LRKKL A G + I TV G GYVLRE+ Sbjct: 185 PGY-QGGSNVVDVYIGYLRKKLE-AGGERRLIHTVRGVGYVLRED 227 >gi|307709217|ref|ZP_07645676.1| response regulator [Streptococcus mitis SK564] gi|307620163|gb|EFN99280.1| response regulator [Streptococcus mitis SK564] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I+TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD+ +NL TV+V+ + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDILINLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL +N ++T+ GY+L++ Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYILKD 222 >gi|307706360|ref|ZP_07643172.1| response regulator [Streptococcus mitis SK321] gi|307708503|ref|ZP_07644968.1| transcriptional regulatory protein CiaR [Streptococcus mitis NCTC 12261] gi|307615419|gb|EFN94627.1| transcriptional regulatory protein CiaR [Streptococcus mitis NCTC 12261] gi|307618278|gb|EFN97433.1| response regulator [Streptococcus mitis SK321] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I+TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G++ VNL TV+V+ + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL +N ++T+ GY+L++ Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYILKD 222 >gi|209573944|gb|ACI62910.1| two component response regulator CusR2 [Acidithiobacillus thiooxidans] Length = 227 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + +I + L+ + V T GE ++ E+ AI+LDLGL + G Sbjct: 8 MRILLVEDDRMIGEAISVALRDAAYAVDWTRDGETALQAITNQEYQAILLDLGLPKLDGC 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R P+ I+S ++ D++ GL GADDY+ KPF +EL+AR+RAI+RR Sbjct: 68 TVLQRVRAMGSDLPIIIISARDALSDRIEGLDLGADDYLVKPFAMDELLARLRAIIRRQG 127 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ +G L ++L ++ + L+ +E+ +++ L LR L++ LY Sbjct: 128 GQRSPVLSSGSLQLDLSTHIAQLGEASVLLSRREFALLQALLLRPGAILSRAQLEERLYG 187 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E E ID I LRKKL G I+ V G G+++ Sbjct: 188 WGEEIESNSIDFLIHALRKKL-----GAEVIKNVRGAGWMV 223 >gi|330721286|gb|EGG99372.1| DNA-binding response regulator [gamma proteobacterium IMCC2047] Length = 218 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 122/220 (55%), Gaps = 7/220 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+ED L +I+ + +E V +V + L + +D ++LDL L D G Sbjct: 1 MRILLVEDTVGLGEAIQDQITAEGHAVDWVETISHAETSLHATH-YDLVLLDLMLPDGSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+L +R A + PV IL+ I D+++GL +GADDY+ KPF+ EL ARI A+ RR Sbjct: 60 IELLIKIRKAGKTVPVIILTARDQISDRIKGLNAGADDYLVKPFDLSELSARIAAVSRRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ L+ G L ++L + G I+LT +E+ + E R T ++K +HLY Sbjct: 120 AGNPNPLLQIGPLEIDLSKHLISRAGTSINLTAREWALFEAFIQRPGTLISKSQLEDHLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E E I+V+I +LRKKL G++ +ETV G GY Sbjct: 180 AFGTEIESNTIEVYISRLRKKL-----GRDLLETVRGLGY 214 >gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 128/222 (57%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G +G++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|104780534|ref|YP_607032.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila L48] gi|95109521|emb|CAK14222.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila L48] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + Y D ++DLGL + G Sbjct: 1 MKLLVVEDEALLRHHLFTRLGEGGHVVQAVANAEEALYQAEQYNHDLAVIDLGLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRSLGQTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS I G L ++L+ K + + LT EY+++E L + K+ + LY Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDDAPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E + +I+V + +LR+KL G K I+TV G GY+ E + Sbjct: 181 DDEERDPNVIEVLVGRLRRKLEGDNGFKP-IDTVRGLGYLFTERCR 225 >gi|283797227|ref|ZP_06346380.1| DNA-binding response regulator VicR [Clostridium sp. M62/1] gi|291075076|gb|EFE12440.1| DNA-binding response regulator VicR [Clostridium sp. M62/1] gi|295092411|emb|CBK78518.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 232 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ E V GE+ IE+ + E+D ++LD+ L GFE Sbjct: 3 KVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIEMAREKEYDIVLLDVMLPKRDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----R 117 V +A+R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+ R Sbjct: 63 VCQAIREFS-EMPIIMLTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSTR 121 Query: 118 RSRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RSR AQ I G+L ++ D++ V + I+LT KE+ ++ELL N ++E Sbjct: 122 RSRKDAQPQSRTITVGELKLDTDSRRVFIGDREINLTAKEFDLLELLVCNPNKVYSREEL 181 Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L +++ + +V+ +DV + +LR+K+ + Y+ T WG GY R Sbjct: 182 LGYVWGNKAAGGGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYFR 231 >gi|160896325|ref|YP_001561907.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160361909|gb|ABX33522.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 124/226 (54%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L+ V +V + E L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRSLRGSGAVVSHVANGSEADTALMTSSEFDLLILDLGLPKMHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR + PV IL+ S+E++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 LEVLKKLRGRGDALPVLILTAADSVEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A S I G L + + + G + L+ +E ++E+L R ++K+ + L Sbjct: 121 MGGASSTIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + DE I+V+I +LRKK+ G I TV G GY L + A Sbjct: 181 EWGDEVSNNAIEVYIHRLRKKIER---GPIRIATVRGLGYCLEKIA 223 >gi|257061481|ref|YP_003139369.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256591647|gb|ACV02534.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 635 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 128/235 (54%), Gaps = 2/235 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD + + +I L + + V + GE G+EL + + +D I+LD+ L + Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDRI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + TP+ +L+ + D V GL++GADDY+ KPF+ EL+ARI+A+ RR + Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L +N V QG +HLT EY ++EL ++++ ++ ++ Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 P + I I LR+KL +N I+TV+G GY L E E +LE+ Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGE--LQECLSFLES 233 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ++LI+DD ++ L FNV + + + D +ILDL + G + Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109 +A+R S P+ LSG E + L GAD Y+ K EEL+ Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >gi|146318749|ref|YP_001198461.1| response regulator [Streptococcus suis 05ZYH33] gi|146320952|ref|YP_001200663.1| response regulator [Streptococcus suis 98HAH33] gi|223932354|ref|ZP_03624357.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] gi|253751848|ref|YP_003024989.1| response regulator protein [Streptococcus suis SC84] gi|253753671|ref|YP_003026812.1| response regulator protein [Streptococcus suis P1/7] gi|253755449|ref|YP_003028589.1| response regulator protein [Streptococcus suis BM407] gi|145689555|gb|ABP90061.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis 05ZYH33] gi|145691758|gb|ABP92263.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis 98HAH33] gi|223899035|gb|EEF65393.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] gi|251816137|emb|CAZ51761.1| response regulator protein [Streptococcus suis SC84] gi|251817913|emb|CAZ55689.1| response regulator protein [Streptococcus suis BM407] gi|251819917|emb|CAR45990.1| response regulator protein [Streptococcus suis P1/7] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 131/222 (59%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 3 IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GEEGVYEAETGVYDLILLDLMLPEKDGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I + S+EDK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 62 QVLKELREKGVTTPVLITTAKESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++V+L V G + L GKE+ ++ +N L K + ++ Sbjct: 122 KFNENTLTFGDVTVDLSTNMTMVNGEEVELLGKEFDLLVYFLQNQNVILPKTQIFDRIWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ K+RKKL G+N ++T+ GY+L+ Sbjct: 182 FDSDTTISVVEVYVSKIRKKLKGTTFGEN-LQTLRSVGYILK 222 >gi|170722109|ref|YP_001749797.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760112|gb|ACA73428.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD AL+ I L+ +F+V V G+ +E + + D +ILDL L I G +V Sbjct: 4 ILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLEAFRQDKPDLVILDLMLPGIDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR S P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RRS H Sbjct: 64 CRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVH 123 Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L I+ G L ++L + V +G + L+ EY ++ +L+ L+++ L L Sbjct: 124 EPRLDSEQILVGGLRIDLAERLVSWRGEEVELSSGEYNLLVVLARNAGEVLSRDRILQQL 183 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G D + +DV I KLR+K ++AG I+TVWG+GY+ Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDSAGEARKIKTVWGKGYLF 226 >gi|76817820|ref|YP_337428.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1710b] gi|76582293|gb|ABA51767.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1710b] Length = 287 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L S F V GE + ++ +ILDLGL + G Sbjct: 65 MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 124 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV IL+ S+ED+VRGL GADDY++KPF EL AR RA++RRS Sbjct: 125 DVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 184 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + G L+ + ++ + + LT +E ++E+L LR + KE ++ Sbjct: 185 GHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 244 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL G I T+ G GY+L Sbjct: 245 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 282 >gi|49078508|gb|AAT49792.1| PA2657 [synthetic construct] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 121/220 (55%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L + + V G D +D IILDLGL PG Sbjct: 1 MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ R ++TPV IL+ S +++ GL++GADDY++KPF+ EEL I+A++RR+ Sbjct: 61 EILQEWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALHIQALLRRAH 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A QS + L ++ + V + G + LT E++++ L L+K HLY Sbjct: 121 GLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG E + +I+V + LR+KL G+ IET G+GY Sbjct: 181 DGETERDSNVIEVHVNHLRRKL-----GREVIETRRGQGY 215 >gi|288937383|ref|YP_003441442.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|288892092|gb|ADC60410.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] Length = 227 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S GDLSV+L ++ V RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIVESQFQAGDLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 221 >gi|322437589|ref|YP_004219679.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321165482|gb|ADW71185.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+L++ED+ LA ++ E + + F V + GE I L +D IILDL L + G Sbjct: 1 MRVLIVEDELRLAENVAEALRQGPGFAVDHAEDGEAAIHLAANACYDLIILDLNLPKMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL LR TP IL+ + E V L +GADDY++KPF+ EL+AR +A++RRS Sbjct: 61 PAVLHRLRATGDKTPTLILTARAERESIVALLNAGADDYLTKPFDLGELIARAKALIRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A I G+L V+ +TV G I L+ EY+++E L R ++K L H+Y Sbjct: 121 TGVAAPSIRLGELEVDTLQQTVSRAGTLIPLSPMEYRILEYLIHRPRIIVSKRQLLEHMY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E +I+ + LR+KL + +G + IET+ GRGY L Sbjct: 181 DFNWEHHSNVIEAHLSNLRRKL-DPSGSEPVIETLRGRGYRL 221 >gi|300717134|ref|YP_003741937.1| transcriptional activator [Erwinia billingiae Eb661] gi|299062970|emb|CAX60090.1| Transcriptional activator [Erwinia billingiae Eb661] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 134/223 (60%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL +ED++ + + L F V V+ G +G+ +++DA+ILD+ L + G+ Sbjct: 1 MRILFVEDEEKTSSYLSRALGESGFTVDVSADGTEGLYYALEFDYDAVILDVMLPGMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL +R +K TPV +LS S++++V+GL+ GADDY+ KPF+ ELVARI+A+VRR Sbjct: 61 RVLEGIRASK-QTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRA 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + + DL ++L A+ V G+R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 TDGADITQLHIHDLHLDLLARRVVRAGNRLELTAKEFALLSLLARHQGEILSKMMIAEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +++V I +LR K+ +A + TV G GYVL Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DAPFDVKLLHTVRGMGYVL 221 >gi|121607358|ref|YP_995165.1| two component transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121551998|gb|ABM56147.1| two component transcriptional regulator, winged helix family [Verminephrobacter eiseniae EF01-2] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL++EDD+ LA + L++ V +V E L EFD +ILDLGL + G Sbjct: 1 MRILIVEDDQVLADGLLRTLRASGAVVDHVASGSEADAALLTNNEFDLLILDLGLPRMHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR ++ PV IL+ S++++V+GL GADDY++KPF+ +EL AR+RA+ RR Sbjct: 61 LEVLKKLRGRGMALPVLILTAADSVDERVKGLDLGADDYMAKPFSLQELEARVRALTRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S I G L + + + G I L+ +E ++ +L R ++KE + L Sbjct: 121 MGGTSSAIRHGPLVYDQAGRVATIDGKMIELSARELGLLGVLLQRVGRLVSKEQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E I+V+I +LRKK+ GG I TV G GY L Sbjct: 181 EWSEEVSNNAIEVYIHRLRKKIE---GGPIRIATVRGLGYCL 219 >gi|241766482|ref|ZP_04764351.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241363311|gb|EER58847.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L++ V +V E L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRTLRASGAVVDHVASGSEADAALMTNNEFDLLILDLGLPKMHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR + PV IL+ S+E++V+GL GADDY++KPF+ +EL AR+RA+ RR Sbjct: 61 LEVLKKLRSRGSALPVLILTAADSVEERVKGLDFGADDYMAKPFSLQELEARVRALTRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S I G L + + + G + L+ +E ++E+L R ++KE + L Sbjct: 121 MGGTSSAIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E I+V+I +LRKK+ G I TV G GY L Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPIRIATVRGLGYCL 219 >gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 234 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD + I L + V G G+E ++D I+LD+ L ++ G Sbjct: 1 MRILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDYDLIVLDVLLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + TPV +L+ + +++D+V+GL +GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 SVLRQLRGQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL ++ + V+ I L+ +E+ ++E L N L++ H++ Sbjct: 121 LQSDVALRVGDLELDAAQRLVKRGERPIELSPREFSLLEYLMRHPNQVLSRTQIAQHVWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + K+IDV+I LR+K+ + G + I TV G GY +R Sbjct: 181 FDFYGDYKVIDVYIGYLRRKI-DRHGASSMIHTVRGVGYSMR 221 >gi|114564455|ref|YP_751969.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114335748|gb|ABI73130.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 129/231 (55%), Gaps = 20/231 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 M++LL+ED+ L +E LK Y+TD+ + IE L K ++D +ILD+GL D Sbjct: 1 MKLLLVEDNPLLVAELEKQLKQAG---YITDVTDKAIEADYLMKETDYDCVILDIGLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ R I+TPV +L+ S +KV G +GADDY+ KPF+ +EL+ARI+A++ Sbjct: 58 NGLSLVTKWRERGINTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117 Query: 118 RSRGHAQS----LIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R+ G S L G VNLD + V V H LT E++++++ + L+K Sbjct: 118 RAHGRVNSSSKQLCYAG---VNLDENEQKVTVGEHIYELTSMEFRLLKIFLMSPKKLLSK 174 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 175 QQLTDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220 >gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +E K ++D I+LDL L + G E Sbjct: 4 KVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKANKYDIILLDLMLPKMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL GADDYI+KPFN E+ ARI+AI+RR+R Sbjct: 64 VCQQIREFS-NVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARS 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I +GDL ++ +++ V + G I+LT KE+ ++ELL N ++E LN Sbjct: 123 EHEEKEKAKTIESGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYFQ 228 >gi|269104518|ref|ZP_06157214.1| response regulator [Photobacterium damselae subsp. damselae CIP 102761] gi|268161158|gb|EEZ39655.1| response regulator [Photobacterium damselae subsp. damselae CIP 102761] Length = 219 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 129/229 (56%), Gaps = 13/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I L+ N +V +L DGI+ +DAI+LDLGL + Sbjct: 1 MKILVVEDEIQLGEQIVAGLEQ---NSWVAELSTDGIDALYRATSEPWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R + P+ ILS S + +V GL +GADDY++KPF ELVAR+RA +R Sbjct: 58 DGITVLKGIREENVDCPIVILSARSELTQRVEGLNAGADDYLTKPFQMVELVARLRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G+ +I G L ++ + V G + LT E++++ L ++ +++ + H Sbjct: 118 RSTGNTSPVIQAGPLELDTRSSKVTFHGQPVELTALEFKVLSYLMHNQDKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +Y + + I+VFI ++R+K+ G + I+TV G GY R NAK Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRRKV-----GTDVIKTVRGLGY--RINAK 219 >gi|170739881|ref|YP_001768536.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168194155|gb|ACA16102.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 223 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD L ++ L S+ + D +D ++LDL L D G Sbjct: 1 MRILLIEDDPVLGEAVRDHLASDGHSADRVATLADAAAAITAAVYDLVLLDLMLPDGRGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR R TPV IL+ I D++ GL +GADDY+ KPF+ EL AR+ A+ RR Sbjct: 61 DFLRQRRTQGDVTPVIILTARDQISDRIAGLNAGADDYLIKPFDLFELTARVGAVGRRYS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ L+ GDL ++L A++V G + LT +E+ + E L R + L+K LY Sbjct: 121 GNPNPLVTIGDLDIDLAARSVHRAGKPVPLTAREWSLFEALVQRPHALLSKAQLEERLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E E I+V++ +LRKK+ G IETV G GY L A+ Sbjct: 181 FDAEVESNTIEVYVGRLRKKI-----GAEAIETVRGMGYRLGAPAR 221 >gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ +A + L E +NV + G +E+ + D ++LDL L I G EV Sbjct: 4 ILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLMLPGIDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121 R LR A P+ +L+ ++ D+V GL++GADDY+ KPF EEL+ARIR + RR R Sbjct: 64 ARRLRAAS-DVPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQRE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ G L+++L A V + R+ LT KEY ++EL +T+++ + ++ Sbjct: 123 DTATVLRYGPLTMDLTAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVMTRDVIYDRVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E II+V++ LR+KL A G I TV G GY+LRE Sbjct: 183 NFGGESNIIEVYVRYLRQKL-EARGEPRLIHTVRGVGYILREE 224 >gi|221231598|ref|YP_002510750.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|220674058|emb|CAR68571.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIEDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLIEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I+TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G++ VNL TV+V+ + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL +N ++T+ GY+L++ Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYLLKD 222 >gi|302023870|ref|ZP_07249081.1| response regulator protein [Streptococcus suis 05HAS68] gi|330832913|ref|YP_004401738.1| response regulator [Streptococcus suis ST3] gi|319758204|gb|ADV70146.1| response regulator [Streptococcus suis JS14] gi|329307136|gb|AEB81552.1| response regulator [Streptococcus suis ST3] Length = 223 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 131/222 (59%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GEEGVYEAETGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I + S+EDK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKELREKGVTTPVLITTAKESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++V+L V G + L GKE+ ++ +N L K + ++ Sbjct: 121 KFNENTLTFGDVTVDLSTNMTMVNGEEVELLGKEFDLLVYFLQNQNVILPKTQIFDRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ K+RKKL G+N ++T+ GY+L+ Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTTFGEN-LQTLRSVGYILK 221 >gi|148545276|ref|YP_001265378.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|167031040|ref|YP_001666271.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|170719204|ref|YP_001746892.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|148509334|gb|ABQ76194.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166857528|gb|ABY95935.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169757207|gb|ACA70523.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ + ++ L F V G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKIGAYLQQGLTEAGFTVDRVVTGTDALQYALSEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 EVLR +R A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR S Sbjct: 61 EVLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+AQ+ + DL V+L + G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 SGYAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V + +LR K+ + K I TV G GY++ Sbjct: 181 DMNFDSDTNVIEVAVRRLRAKIDDDFAPK-LIHTVRGMGYLM 221 >gi|284039640|ref|YP_003389570.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283818933|gb|ADB40771.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 M++L++ED+ H+I+ L+ F V D+ DG+ L + AII DL L + Sbjct: 1 MKLLVVEDEPKTLHAIQQGLEESQFEV---DIAYDGLLAKRLALKNTYAAIITDLILPGL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+E+ R LR +STP+ +L+ + ED+++G +GAD Y++KPF EL+AR+R++ + Sbjct: 58 NGYELCRQLRAEGVSTPILMLTALDETEDRIQGFDAGADQYLAKPFQFAELLARVRSLTK 117 Query: 118 RSR--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R ++ G + +NLDAKTV G I LT +E+ ++E L + L+K Sbjct: 118 RGTQVTMTAQMLRYGGIEINLDAKTVTRDGQPIELTAREFALLEFLMRNQGRVLSKPAIA 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 H++D + +++V+I LRKK+ K I T +G GY+ +E Sbjct: 178 EHVWDLNFDTGTNVVEVYINYLRKKIDKGF-DKKLIHTHFGMGYMFKE 224 >gi|283798612|ref|ZP_06347765.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|291073596|gb|EFE10960.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|295090640|emb|CBK76747.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++A+A + L+ F V + D GE G++ +FD +ILDL L + GFE Sbjct: 3 RILIVEDEEAIAELEKDYLELSGFEVEIEDNGETGLKRALEEDFDLLILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R AK +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICRKVREAK-NTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V V G + T KE+ ++ L+ N TKE Sbjct: 122 LIGSGMPENEIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLTFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SRIWDMESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|56479487|ref|YP_161076.1| two component response regulator [Aromatoleum aromaticum EbN1] gi|56315530|emb|CAI10175.1| Two component response regulator [Aromatoleum aromaticum EbN1] Length = 220 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 123/219 (56%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ LA + L + + V D G D + DA++LDLGL + G Sbjct: 1 MHILVVEDEPTLAAQLVEALAAAGYAVDRADNGRDAHFIGDVEPLDAVVLDLGLPLMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A + PV IL+ + +KV G+ +GADDY++KPF+ EEL+AR+RA++RR+ Sbjct: 61 TVLKKWRAAGRTMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARLRALIRRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G + ++ A V V G ++LT E ++++ L + +++ H+Y Sbjct: 121 GHASAELACGPVLLDTRAGRVSVNGDAVNLTSHELRVLDYLMHHQGEIVSRSDLTEHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VFI +LRKKL IETV G GY Sbjct: 181 QDFDRDSNTIEVFIGRLRKKLP-----AGMIETVRGLGY 214 >gi|254523237|ref|ZP_05135292.1| DNA-binding response regulator [Stenotrophomonas sp. SKA14] gi|219720828|gb|EED39353.1| DNA-binding response regulator [Stenotrophomonas sp. SKA14] Length = 227 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+L IEDD A I L S V +V D G +G+ ++D I LD L + G Sbjct: 3 RVLTIEDDAITAQEIVAELSSHGLQVDWVAD-GREGLVRAASGDYDVITLDRMLPGLDGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR ++TPV +LS +S ++++VRGL++G DDY++KPF +E+ AR+ ++RR + Sbjct: 62 AIVTTLRRIGVATPVLMLSALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRRQ 121 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A ++++ GDL ++L A+T G + L E++++E L LT+ M + Sbjct: 122 QPASNETVLRVGDLQLDLLARTAHRGGRSLSLLPTEFKLLEYLMRNAGQVLTRMMLFEEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +P +IDV I +LR+KL + A + I TV G GYVL E Sbjct: 182 WGYHFDPGTNLIDVHIGRLRRKL-DQADAPSLIRTVRGSGYVLSET 226 >gi|21673035|ref|NP_661100.1| DNA-binding response regulator [Chlorobium tepidum TLS] gi|21646102|gb|AAM71442.1| DNA-binding response regulator [Chlorobium tepidum TLS] Length = 220 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD +A ++ + LK + V +V D GE + ++ E A++LDLGL G Sbjct: 1 MRVLLVEDDPMIAEAVSVALKDAAYAVDWVRD-GEKAADALRYGEHQAVLLDLGLPGRGG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL ALR S PV I++ + +++ GL SGADDY+ KPF+ +EL+AR+RA++RR Sbjct: 60 LEVLAALREGGSSIPVIIITARDGLGERIAGLDSGADDYLVKPFDLDELLARLRAVIRRQ 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A LI G ++++ T R L+ +E+ ++ L L+ L++ +Y Sbjct: 120 GGQASGLIGNGQITLDPATHTAFCGEERAVLSSREFAVLHALLLQPGRILSRSALEERVY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E E ID I +LR+KL G I+ + G G+++ + Sbjct: 180 GWDEEVESNAIDYLIHQLRRKL-----GATSIKNIRGAGWMVEKQ 219 >gi|109896972|ref|YP_660227.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109699253|gb|ABG39173.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 222 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 120/219 (54%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD++L+ ++ L+SE + V + EF +ILDLGL D+ G Sbjct: 1 MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR K S P IL+ S+ DK+ GL SGADDY++KPF+ +EL+AR+R + RR Sbjct: 61 EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SLI G++ ++L V + L+ +E+ +++ L +K LY+ Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DE I+V I LRKKL K++I+T+ G GY Sbjct: 181 WGDELSSNAIEVHIHNLRKKLP-----KDFIKTIRGVGY 214 >gi|221069740|ref|ZP_03545845.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220714763|gb|EED70131.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 270 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 129/228 (56%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGF 60 R L+IEDD A I L+ + +V V G GI +D IILD L + G Sbjct: 39 RYLIIEDDALNARYIAEGLRQQGAHVSVCADGVQGIAQAVGENWDVIILDRMLPNGFDGL 98 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ALR TPV +LS +S+ +++VRGL++G DDY++KPF EL AR+ A+VRR++ Sbjct: 99 QILQALRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 158 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + DL VNL +++ E G + L +E++++ L + +T+ M L ++ Sbjct: 159 IPAPTREMQVADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVW 218 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D R +P+ +IDV I +LR K+ + I TV G GY L + +D Sbjct: 219 DYRFDPQTNVIDVHISRLRSKV-DKGFATPLIHTVRGVGYSLSDQPQD 265 >gi|78067449|ref|YP_370218.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77968194|gb|ABB09574.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 273 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL +PG Sbjct: 32 MRILIAEDDSILADGLTRSLRQSGYAVDHVKTGVDADTALSMQTFDLLILDLGLPKMPGL 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 92 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 151 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + H + L+ +E ++E+L R ++KE ++HL + Sbjct: 152 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 211 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 212 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 249 >gi|148243637|ref|YP_001219877.1| two component heavy metal response transcriptional regulator [Acidiphilium cryptum JF-5] gi|146400200|gb|ABQ28735.1| two component heavy metal response transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] Length = 225 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L+ F V GE G+E + +DAIILD+ L GF Sbjct: 1 MRVLIVEDEAKTAAYLRKGLEENGFTADVATDGETGLEFARHGGYDAIILDIMLPRRNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R T V +L+ + D+V GL++GADDY+ KPF EL+AR+R I+RR Sbjct: 61 EILDEIRRRDSQTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI DL ++L G + LT KE++++ LL+ R +++ + ++D Sbjct: 121 ARQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DV + +LR KL + + I TV G GYVL + Sbjct: 181 INFDSGTNVVDVHMYRLRAKLDDPF-SRRLIHTVRGVGYVLED 222 >gi|296273138|ref|YP_003655769.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296097312|gb|ADG93262.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 219 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 131/224 (58%), Gaps = 10/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 M+ILL+ED+K LA I L+ Y+ DL GE+G+ K +D +ILDLGL + Sbjct: 1 MKILLLEDNKTLAKGIFNKLEQHG---YIIDLFYDGEEGLYSLKTSNYDLLILDLGLPSL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++++ LR ++ P+ I+S ++ ++ GL SGADDY+ KPF+ +E++AR++A++R Sbjct: 58 DGIDIIKDLRNSQKDIPILIISARDKLDQRILGLDSGADDYLCKPFDLDEVIARVQALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+ LI DL N +KTV I L+ +E + E + L N ++KE ++H Sbjct: 118 RSKNQLSKLIKYKDLEYNSLSKTVTKDDVVIELSKREINIFEHMLLNLNNVVSKENIVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + DE ++ ++ +LRKKL ++ ++TV G GY+L Sbjct: 178 ITSFDDEFNPTAVETYVSRLRKKLGDSIN----LKTVRGLGYIL 217 >gi|83717906|ref|YP_439918.1| DNA-binding response regulator TctD [Burkholderia thailandensis E264] gi|83651731|gb|ABC35795.1| DNA-binding response regulator TctD [Burkholderia thailandensis E264] Length = 267 Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L S F V GE + ++ +ILDLGL + G Sbjct: 45 MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 104 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+VRGL GADDY++KPF EL AR RA++RRS Sbjct: 105 EVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 164 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + G L + ++ + + LT +E ++E+L LR + KE ++ Sbjct: 165 GHDHVRVECGPLEFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 224 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL G I T+ G GY+L Sbjct: 225 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 262 >gi|1834375|emb|CAA70859.1| RagA [Bradyrhizobium japonicum] Length = 226 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD A +I L F V G DG++ + DA+I+D L + G Sbjct: 3 RILLIEDDAETAEAIVAELADRGFEVQWAGDGVDGLDRARTSSPDAMIVDRMLPGMDGLA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ ALR ++ TPV +LS + +++D+VRGL+ G DDY++KPF ELVARI A++RR Sbjct: 63 VIEALRKDQVRTPVLVLSALGAVDDRVRGLRMGGDDYLTKPFAIIELVARIEALLRRPTD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++++ G L ++L +T + L +E++++E + R + LT+ M L +++ Sbjct: 123 SRETILHVGPLEIDLIERTARRGERELELLPREFRLLEYMMRRNDQLLTRAMLLEEVWNY 182 Query: 182 RDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P +IDV + +LR K+ + G I V G G+VLR Sbjct: 183 KFVPATTNLIDVHMGRLRHKV-DGPGEVQLIHNVRGSGFVLR 223 >gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F+V + G + D I+LD+ L D+ GF Sbjct: 9 KLLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEAQESRPDLIVLDVMLPDMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A I+TPV L+ + DK++GL G DDY++KPF EE+VARIRAI+RR+ G Sbjct: 69 VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 128 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +L+ GDL ++ DA V G +I L+ E++++ L + ++K L+H++ Sbjct: 129 GEEEDALLRVGDLVIDEDAHEVTRAGVQIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + EV I++ +I LR+KL+ I T G GY+LR Sbjct: 189 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 231 >gi|291545359|emb|CBL18467.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 233 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A + L L E F + + GE+ ++ + D I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELVALYLTKECFETKIVNDGEEALKQFHIFHPDLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +LS DKV GL+ GADDYI KPF+ +ELVAR+RA++RR Sbjct: 66 VCREIRHTS-DVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVRAVLRRFHV 124 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + + DL +NL +V GH+I + KE +++ L+ N T+E L Sbjct: 125 KSPSAAPKEKCVSYPDLVINLTNYSVTYMGHQIDMPPKELELLYFLAASPNQVFTREQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +H++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDNPNWA--LSTVWGIGY 226 >gi|313679455|ref|YP_004057194.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313152170|gb|ADR36021.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 220 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 9/223 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IP 58 MRILL+ED+ +L + ++S ++V D E E E D +ILD+ L + Sbjct: 1 MRILLVEDEASLREPMAAYVRSMGYDVDEADSIEAAREALYDAEPDLVILDVMLPEGVDA 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GFE LR A PV ++ ++ED+VRGL G DDY++KPF+ EEL AR+RA++RR Sbjct: 61 GFEFASELREAGFDGPVLFITARDAVEDRVRGLDLGGDDYLTKPFSLEELAARVRALLRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S G L V+ A+ V QG + L+G+E+ +IEL SL + + E L L Sbjct: 121 QGSVRRSFFERGPLRVDYAARKVHWQGREVALSGREFALIELFSLHPDRVYSAEELLERL 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G D +KI+ V++ +LR KL G ++TV G GY L Sbjct: 181 FPGTDS-GLKIVRVYVHRLRTKL-----GPEVVQTVAG-GYRL 216 >gi|299135367|ref|ZP_07028557.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298589775|gb|EFI49980.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 220 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ +A + L++ + V GED + L ++ AIILDLGL + G Sbjct: 1 MRVLVVEDDQRIASDVSRTLEASGYVVETVANGEDALFLGDTEDYGAIILDLGLPGMEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R PV IL+ S ++V G+ +GADDY+ KPF EEL+AR+R+IVRRS Sbjct: 61 AVLKRWRTNGRHMPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S++ G+++++ V +G I L+ EY+++ L + ++ + ++Y Sbjct: 121 GHGSSIMSAGEITLDERQMKVTRRGVPITLSPLEYRLVAHLLRNRGRVVSPQEIDENVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E + ++V + ++RKKL G + IET G GY++ E Sbjct: 181 HGEEHDSNTLEVLVGRVRKKL-----GADAIETRRGFGYLMPE 218 >gi|107028754|ref|YP_625849.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690087|ref|YP_835710.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170733421|ref|YP_001765368.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105897918|gb|ABF80876.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116648176|gb|ABK08817.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169816663|gb|ACA91246.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 224 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L +EDD A+ I L + F V TD G +G+ +DAI LD L G Sbjct: 1 MRVLTVEDDAVTANEIVGELTARGFEVDWTDNGREGMMRAMSASYDAITLDRMLPGADGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ A+R I TPV +LS + +++++RGL++G DDY++KPF+ EL ARI ++RR + Sbjct: 61 AIVTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q+L+ G L ++L ++ I L E++++E + T+T+ M Sbjct: 121 ASGVPQQTLLKVGALELDLISRCARRGADEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P +IDV + +LRKK+ + G I+TV G GY+L Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGANPMIQTVRGSGYML 223 >gi|329902991|ref|ZP_08273335.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Oxalobacteraceae bacterium IMCC9480] gi|327548543|gb|EGF33207.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Oxalobacteraceae bacterium IMCC9480] Length = 228 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 122/224 (54%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRILL EDD LA + L+ Y TD +G+E +FD +ILDLGL + Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSG---YATDCVHNGVEADLALSTQDFDLLILDLGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR LR PV IL+ SIE +V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 SGLEVLRKLRARNSHLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +++ G LS + + + + L+ +E ++E+L R ++KE ++H Sbjct: 118 RGVGGGPTVVRHGPLSYDQVGRIAYINEQMLDLSARELGLLEVLLQRTGRLVSKEQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + +E I+V++ +LRKK+ G I TV G GY L Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEL---GGVRIATVRGLGYCL 218 >gi|312959649|ref|ZP_07774166.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311286366|gb|EFQ64930.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 226 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED H + L F + G G L ++D +ILD+ L G+ Sbjct: 1 MKLLIVEDQPKTGHYLRQGLAEAGFTTELVADGTSGQHLALTGDYDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A+R A + PV L+ ++ED+V GL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 QILQAVRSAGLDIPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + + DL ++L + VE G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 STPQDTALQLADLRLDLIRRRVERDGQRIDLTAKEFALLELLLRRQGEVLPKTLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + II+V I +LR K+ + K I TV G GYVL E Sbjct: 181 DMNFDSDTNIIEVAIRRLRLKVDDNFPNK-LIHTVRGMGYVLEE 223 >gi|163734401|ref|ZP_02141841.1| probable two-component response regulator transcription regulator protein [Roseobacter litoralis Och 149] gi|161392409|gb|EDQ16738.1| probable two-component response regulator transcription regulator protein [Roseobacter litoralis Och 149] Length = 223 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 121/206 (58%), Gaps = 4/206 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIED+ +A + L +E ++V GEDG+EL +D ++LDL L I G Sbjct: 1 MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQ 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR K TP+ +L+ + E+KV GL+ GADDY+ KPF+ +ELVARI A+ RR+ Sbjct: 61 GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G+ + ++I G ++ + + V V+ I LT KE +++LL L++E LN Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLS 202 ++ +P ++DV++ +LR+KL Sbjct: 181 TVWGLNADPLTNVVDVYVGRLRRKLG 206 >gi|254411111|ref|ZP_05024889.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182466|gb|EDX77452.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 224 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 122/222 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A ++ L+ +++ V + GE G + + + + I+LD+ L + G Sbjct: 1 MRILLVEDDQRIAKALAETLQDQHYIVDMATDGEAGWDFVEAFSYKLILLDVMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR + TPV +L+ + DKV GL +GADDY+ KPF+ EL ARIRA++RR Sbjct: 61 SFCQRLRRSGKMTPVLMLTAKDTSNDKVIGLDAGADDYVVKPFDLPELTARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ LS++ + V +HLT KEY ++ELL ++ L L+ Sbjct: 121 SSLPPVLEWERLSLDPNTCQVTYAEQPLHLTPKEYGLLELLLRSHGRVQSRSAILEQLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D P + + V I LRKKL A + I+TV+G GY L+ Sbjct: 181 WDDPPGEEAVKVHIKDLRKKLRAAGAPPDLIQTVYGIGYRLK 222 >gi|121593642|ref|YP_985538.1| two component heavy metal response transcriptional regulator [Acidovorax sp. JS42] gi|120605722|gb|ABM41462.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 219 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 124/220 (56%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ A + L F V + G DG L +D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++RALR A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q I DL ++L + G RI+LT KE+ ++ELL+ R L + + + ++ Sbjct: 121 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRHGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D + + +IDV I +LR K+ +A K I TV G GY Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDAFNPK-LIHTVRGMGY 219 >gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi] Length = 242 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 132/227 (58%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ +L + + L+ + F V G +G++ + + DA+ILD+ + + GF Sbjct: 17 VRVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGF 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR + PV L+ ++EDKV GL GADDY++KPF+ EE+V R+R I+RR+ Sbjct: 77 GMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRA- 135 Query: 121 GHA---QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 GH+ QS VT DL ++ D + V G + L+ E+ ++ + T L+K L+ Sbjct: 136 GHSDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILD 195 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 H+++ EV +++ ++ LR+K+ I T+ G GYV+RE Sbjct: 196 HVWNYDFGGEVGVVESYVSYLRRKIDTTE--PRLIHTLRGVGYVMRE 240 >gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291] Length = 222 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LA ++ LK+E F V G DG+ FD +ILD+ L G+ Sbjct: 1 MKVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + TPV +L+ D+ GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G LS++ TV+ I LT +EY ++E L K+ +TK L +++D Sbjct: 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++V++ LR+K+ + G N IET+ G GY L Sbjct: 181 AHHHGPDNVVEVYVGYLRRKI-DVPFGTNTIETIRGVGYRL 220 >gi|145224468|ref|YP_001135146.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145216954|gb|ABP46358.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 251 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 128/231 (55%), Gaps = 17/231 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ LA + L+ E F+ V D G D I L + ++ D +ILDLGL I G E Sbjct: 19 RALVVDDEVPLAEVVASYLQREQFDAVVADNGVDAIALARDFDPDVVILDLGLPGIDGLE 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R+LR + V +L+ + D V GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 79 VCRSLRTFSDAY-VVMLTARDTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRL 137 Query: 121 ------GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 G + + G LS+++ A+ V + I LT E+ +++ LS R L++ Sbjct: 138 LQSPPTGADREVTPPRRFGALSIDVAAREVRIADDPILLTRTEFDILQALSGRPGIVLSR 197 Query: 172 EMFLNHLYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L + RDEP V +++DV I LR+KL + A YI TV G GY Sbjct: 198 RQLLEII---RDEPWVGNDQLVDVHIGHLRRKLGDDAARPRYIATVRGVGY 245 >gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate sensing [Symbiobacterium thermophilum IAM 14863] Length = 235 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ + L+ F V D GEDG+ + + E D +ILD+ L I GFE Sbjct: 7 RILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEEIDLVILDVMLPGIDGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLRALR PV +L+ D+V G + GADDY++KPF+ EL R++AI+RR+R Sbjct: 67 VLRALR-RHSELPVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRRARR 125 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A Q +V G L++N + V G R+ LT E+Q++ +L+ T++ ++ Sbjct: 126 SAEPQDQDTLVLGPLTINFASYEVLRDGRRVDLTPTEFQILGVLARSPGRVFTRDELVDR 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +V+ +DV I LR KL IETV G GY Sbjct: 186 VMGPDFYGDVRTVDVHIRHLRAKLEENPSEPRLIETVRGVGY 227 >gi|332361852|gb|EGJ39655.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 224 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 131/223 (58%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + + D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQIFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++VNL + G + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDVTVNLSTNSTLKDGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + V +++V++ K+RKKL A KN + T+ GY+L++ Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTAFAKN-LHTLRSVGYILKD 222 >gi|319764284|ref|YP_004128221.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330826433|ref|YP_004389736.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317118845|gb|ADV01334.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329311805|gb|AEB86220.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 222 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 128/222 (57%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + ++ +L++E++ V + TD G+ ++D ++LDLGL G Sbjct: 5 MRLLLVEDDTMIGEAVRDLLRAEHYAVDWATD-GDMADAALATQQYDLVLLDLGLPRRDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR+LR K TPV I + + +V GL +GADDY+ KP++ EL+ARIRA++RR+ Sbjct: 64 LAVLRSLRARKDRTPVLIATARDGVAQRVEGLDAGADDYVLKPYDAGELLARIRALLRRA 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+ + +++N + VQG + L+ +E+ ++E L R L+++ + LY Sbjct: 124 SGRAEPVYEHQGVTLNPGTREATVQGRPVVLSAREWAVLEPLIARPGMVLSRQQIEDKLY 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE ++V++ LRKKL G + + V G GY++ Sbjct: 184 GWGDEVSSNAVEVYVHGLRKKL-----GAHIVLNVRGLGYMV 220 >gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium abscessus ATCC 19977] gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium abscessus] Length = 247 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK + F+VY D G ++L + DA+ILD+ + + GF Sbjct: 22 KVLVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLARTVRPDAVILDVMMPGMDGFG 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR I P L+ ++DK+ GL GADDY++KPF+ EE+VAR+R I+RR Sbjct: 82 VLRRLRADGIDAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVARLRVILRRSGM 141 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S +S + D+ ++ D V G + L+ E+ ++ + T L+K L+H Sbjct: 142 GSEPARKSRLSFADIELDEDTHEVWKAGEPVALSPTEFTLLRYFMINAGTVLSKPKILDH 201 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ N G K + T+ G GYVLRE Sbjct: 202 VWRYDFGGDVNVVESYVSYLRRKIDN--GEKRLLHTLRGVGYVLRE 245 >gi|29830515|ref|NP_825149.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|290959412|ref|YP_003490594.1| phosphate two component system response regulator [Streptomyces scabiei 87.22] gi|29607627|dbj|BAC71684.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] gi|260648938|emb|CBG72052.1| phosphate two component system response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG EV Sbjct: 1 MLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 61 CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118 Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219 >gi|264680102|ref|YP_003280011.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|262210617|gb|ACY34715.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] Length = 209 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 124/213 (58%), Gaps = 11/213 (5%) Query: 12 LAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDIPGFEVLRALRV 68 + ++ +L+ E YV D +DG + +++D ++LDLGL + G +VLR LR Sbjct: 2 IGQAVLALLRREG---YVVDWVQDGAQADTALYGHQYDLVLLDLGLPKLDGLQVLRQLRA 58 Query: 69 AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIV 128 K +TPV + + ++ D++ GL +GADDY+ KP++ +EL+ARIRA+ RR+ GH ++ Sbjct: 59 RKDATPVLVATARDAVHDRIAGLDAGADDYVIKPYDMDELLARIRALTRRAAGHLDAVYE 118 Query: 129 TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVK 188 G + +N + + V G + L+G+E+ +++ L R TL+++ + LY DE Sbjct: 119 HGGVMLNPNTREASVNGQPVTLSGREWAVLQALLARPGATLSRQQIEDKLYGWGDEVSSN 178 Query: 189 IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++V+I LRKKL AA + V G GY++ Sbjct: 179 AVEVYIHGLRKKLGAAA-----VLNVRGLGYMV 206 >gi|260221381|emb|CBA29886.1| Transcriptional activator protein copR [Curvibacter putative symbiont of Hydra magnipapillata] Length = 228 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 129/223 (57%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ + LK +F V + G DG+ E D IILD+ L + G+ Sbjct: 1 MKILIIEDEPKTGEYLRQGLKEASFIVDLLHNGNDGLHAALEDEHDLIILDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR PV L+ +ED+++GL+ GADDY+ KPF+ EL+AR+R I+RR + Sbjct: 61 EVMRNLRRKGNEVPVLFLTARDQVEDRIKGLELGADDYLVKPFSFAELLARVRTILRRGK 120 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A SL V DL ++L + V G RI LT KE+ ++ELL R+ L + + + + Sbjct: 121 SGVEATSLKV-ADLELDLLRRRVTRAGKRIDLTSKEFGLLELLMRRQGEVLPRSLIASQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +I+V + +LR K+ +A K ++TV G GYVL Sbjct: 180 WDMNFDSDTNVIEVAVRRLRSKIDDAFEPK-LLQTVRGMGYVL 221 >gi|254773908|ref|ZP_05215424.1| two component response transcriptional regulatory protein prra [Mycobacterium avium subsp. avium ATCC 25291] Length = 223 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 ++++DD + S+E L+ F V G + + DAI+LD+ + + G V+ Sbjct: 1 MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 ALR PVC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR A Sbjct: 61 TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATA 120 Query: 124 QS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S I G L V++ + V G + LT +E+ ++ +L+ K L++ L ++ Sbjct: 121 TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++DVFI LR+KL A GG + TV G G+VLR Sbjct: 181 YDFAADTNVVDVFIGYLRRKL-EANGGPRLLHTVRGVGFVLR 221 >gi|226357259|ref|YP_002786999.1| response regulator OmpR [Deinococcus deserti VCD115] gi|226319249|gb|ACO47245.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 220 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A +L+ + V G +G+E E+ I+LD+ L + GF Sbjct: 1 MRLLLVEDDPRIAQPTTGVLREAGYAVTWAQTGPEGLEAAMLGEYPLIVLDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + + + L+ + D++ GL G D Y+ KPF EL+A +RA+ RR R Sbjct: 61 EVARELRAGGVDSAILFLTARGELADRIEGLDLGGDAYLVKPFAMPELLATLRALSRRER 120 Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + + LD A+TV G I +TG+EY +IE L+L T+E L+ + Sbjct: 121 GQGAPRVTFANGRGTLDTVARTVGWDGQEISVTGREYALIEALALAPERWFTREELLDRV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E +I+DV++ +R+KL+ A + + GRGY Sbjct: 181 WGPEFGGEARIVDVYVRYVRRKLAPEA-----VASERGRGY 216 >gi|262281227|ref|ZP_06059009.1| two-component system DNA-binding response regulator [Acinetobacter calcoaceticus RUH2202] gi|262257458|gb|EEY76194.1| two-component system DNA-binding response regulator [Acinetobacter calcoaceticus RUH2202] Length = 224 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 11/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A S +L+ F V + G DG+ +FD I+LDLGL + G + Sbjct: 3 KILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPMMDGMQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + +TPV I+S ++++V GL +GADDY+ KP+ +EL+ARI A++RRS Sbjct: 63 VLKQIR-QRAATPVLIISARDQLQNRVDGLNNGADDYLIKPYEFDELLARIHALLRRSGV 121 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 AQ L+ +GDL +N++ +G RI L+ +E+ ++ L N +K + Sbjct: 122 EAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LYD + I+V++ LR KL GK++I T+ G GY L Sbjct: 182 KLYDFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 221 >gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] Length = 229 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ LA + L L+ E ++V D G +G+E+ +FD I+LDL L ++ GFE Sbjct: 4 RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R L+ K T + +++ SI D V GL GAD+YI KPF EEL+ARIRA RR Sbjct: 64 VTRRLQQEK-DTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATFRRQDI 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ DL +++ + V I LT +E+ ++ L N +T+E L Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D E ++DV+I LR K+ + G ++YI+TV G GYV+RE Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300076603|gb|ADJ66002.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 123/222 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED L+ + ++ + V G D L ++ +ILDL L + G Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R TPV IL+ + D+V GL GADDY++KPF EEL AR++A++RRS+ Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G LS + ++T G + LT +E+ ++E L +R T+ KE ++ Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D + I+++I +LRKKL + G+ I T+ G GY+L+ Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 >gi|296134128|ref|YP_003641375.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032706|gb|ADG83474.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 237 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K LA ++ + K N+ + V G G E+ + +D IILD L G Sbjct: 1 MRLLLVEDEKRLADALAYIFKKNNYGIDVAYDGITGQEMAETGIYDLIILDRMLPKKEGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 VL+ LR I TPV +L+ ++ED+V GL +GADDY+ KPF EEL+ARIRA+ RR S Sbjct: 61 SVLKHLRSIGIKTPVLLLTARDAVEDRVEGLDAGADDYLVKPFATEELLARIRALARRQS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I G L+++ + ++ LT KE Q++EL +TKE L+ ++ Sbjct: 121 ENFHSEKIRVGSLTLDPLHCEITCGDEKVRLTYKETQLLELFMRNSGQVITKEQILDRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E+ ++++I LRKK+ K +ETV G GY L+E Sbjct: 181 GLDSEVELNNVEIYIHYLRKKIV-PEKSKVRLETVRGVGYCLKE 223 >gi|317053265|ref|YP_004119032.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] gi|316953004|gb|ADU72476.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 230 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 135/230 (58%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + + L F V V+ G +G+ +++DAIILD+ L + G+ Sbjct: 1 MRLLLVEDEEKTSTYLRRALGESGFTVDVSANGAEGLHFALEFDYDAIILDVMLPGMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL +R +K TPV +LS S++++V+GL+ GADDY+ KPF+ ELVARI+A+VRR Sbjct: 61 RVLEGVRSSK-QTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRS 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G + + DL V+L ++ V G R+ LT KE+ ++ LL+ + L+K M + Sbjct: 120 ADGTDITQLQIHDLQVDLLSRRVFRLGTRLDLTAKEFALLSLLARHQGEILSKMMIAEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +D + + +++V I +LR K+ + + TV G GYVL D+ Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKVDTPFAVR-LLHTVRGMGYVLEVRPGDQ 228 >gi|134279196|ref|ZP_01765909.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 305] gi|134249615|gb|EBA49696.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 305] Length = 252 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L S F V GE + ++ +ILDLGL + G Sbjct: 30 MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 89 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV IL+ S+ED+VRGL GADDY++KPF EL AR RA++RRS Sbjct: 90 DVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 149 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + G L+ + ++ + + LT +E ++E+L LR + KE ++ Sbjct: 150 GHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 209 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++++ +LRKKL G I T+ G GY+L Sbjct: 210 LDESVNADAVEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 247 >gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 225 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 118/218 (54%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR G Sbjct: 63 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|291547625|emb|CBL20733.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 229 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++A+A + L+ F V + + G+ G+ EFD IILDL L ++ GF+ Sbjct: 3 RILIIEDEEAIADLEKDYLELSGFEVEIENRGDTGLVRAMKEEFDLIILDLMLPEVDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQVREEK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S H +I + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LVGSNVHKNDVIEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 REIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|254822956|ref|ZP_05227957.1| two component response transcriptional regulatory protein prra [Mycobacterium intracellulare ATCC 13950] Length = 223 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 ++++DD + S+E L+ F V G + + DAI+LD+ + + G V+ Sbjct: 1 MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 ALR PVC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR A Sbjct: 61 TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATA 120 Query: 124 QS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S I G L V++ + V G + LT +E+ ++ +L+ K L++ L ++ Sbjct: 121 TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++DVFI LR+KL A GG + TV G G+VLR Sbjct: 181 YDFAADTNVVDVFIGYLRRKL-EAHGGPRLLHTVRGVGFVLR 221 >gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] Length = 260 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 118/218 (54%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 38 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGTQGAIDLVVLDLGLPGMDGLE 97 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR G Sbjct: 98 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 218 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 255 >gi|254422490|ref|ZP_05036208.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189979|gb|EDX84943.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 871 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 125/223 (56%), Gaps = 7/223 (3%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDIPGFEV 62 +EDD+ALA +IE +L S + YV DL DGIE + + + +D I++D L + G ++ Sbjct: 1 MEDDRALAGAIEQLLLSHH---YVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQL 57 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR STP+ +L+ + D+V GL +GADDY+ KPF EEL+ARIRA++RRS G Sbjct: 58 CQQLRNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGI 117 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ GDL ++ + V I LT KEY ++EL + + L+ ++ Sbjct: 118 VSPVLQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFE 177 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D P V + I LR+KL G + I TV+G GY LR A Sbjct: 178 DTPTVASVRTHIKGLRQKLRQ-VGLSDVISTVYGLGYRLRTAA 219 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD ++ ++ +L+ F + + + + E D ++LD+ + + GF++ Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R P+ +S + + GADDYI KP ELVAR+ + RSR Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARSR 690 >gi|91791478|ref|YP_561129.1| response regulator receiver [Shewanella denitrificans OS217] gi|91713480|gb|ABE53406.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 225 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD + ++N G++G+ L + +D I+LD L + G Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ALR + STPV ILS ++ ++++V+GL++G DDY++KPF EL+ R+ + +R++ Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A + +V G L + L + V + H + L KE+Q+++ L N +++ + ++ Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P +IDV I KLR+K G IETV G GY L Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEE-IGFPEMIETVRGAGYRL 221 >gi|254247838|ref|ZP_04941159.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124872614|gb|EAY64330.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 270 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L +EDD A+ I L + F V TD G DG+ +DAI LD L G Sbjct: 47 MRVLTVEDDAVTANEIVGELTARGFEVDWTDNGRDGMMRAMSASYDAITLDRMLPGADGL 106 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ A+R I TPV +LS + +++++RGL++G DDY++KPF+ EL ARI ++RR + Sbjct: 107 AIVTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 166 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q+L+ G L ++L ++ I L E++++E + T+T+ M Sbjct: 167 ASGVPQQTLLKVGVLELDLISRCARRGTDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 226 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P +IDV + +LRKK+ + G I+TV G GY+L Sbjct: 227 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGANPMIQTVRGSGYML 269 >gi|332671031|ref|YP_004454039.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340069|gb|AEE46652.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 230 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 128/233 (54%), Gaps = 18/233 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL EDD A+A + L E ++V V G+ I+ D ++LDLGL D+ G + Sbjct: 3 QVLLAEDDPAIAEPLARALGREGYDVRVQGTGQGAIDGASTA--DLVVLDLGLPDMDGLD 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R ++TPV +L+ + D V GL +GADDY++KPF EL+AR+RA++RR+ G Sbjct: 61 VARAIRNQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTVG 120 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKE 172 HAQ++ V D++ + QG R +HLT KE+ ++ +L T + +E Sbjct: 121 DPGDEDELHAQNVRV--DVAAHR-----AFQGDRELHLTAKEFDLLRVLVAAAGTVVARE 173 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ K +D+ + LR+KL + AG Y+ TV G G+ A Sbjct: 174 TLMREVWGSDPTGSTKTLDMHVSWLRRKLGDDAGAPRYVTTVRGMGFRFETGA 226 >gi|303256413|ref|ZP_07342427.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47] gi|302859904|gb|EFL82981.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47] Length = 218 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + ++ LK E + V G I F +ILDLGL G Sbjct: 1 MRILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K TPV + + ++ D++ GL +GADDY+ KP++ +EL ARIRA++RRS Sbjct: 61 AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I G L++N + V G + L+ KEY ++ L+ R L++ LY+ Sbjct: 121 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 I+V I LRKKLS ++ I+TV G GYVL Sbjct: 181 YESLIGSNAIEVHIHHLRKKLS-----EDSIKTVRGVGYVL 216 >gi|197106157|ref|YP_002131534.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] gi|196479577|gb|ACG79105.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] Length = 230 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 129/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L+ ++L L + V GE+ L + +DAIILDLGL + G Sbjct: 1 MRILLVEDDPDLSRQLKLALTDAGYAVDHAPDGEEAQFLGETEPYDAIILDLGLPKVDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R ++TPV IL+ + +KV G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 SVLERWRRENMATPVLILTARGAWSEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + G L ++ A V G + LT EY+++ L + + +++ + HLYD Sbjct: 121 GHATPNLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQGRVISRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VFI ++RKK+ G + IETV G GY L Sbjct: 181 QDFDRDSNTIEVFIGRVRKKI-----GADRIETVRGLGYRL 216 >gi|331001460|ref|ZP_08325078.1| transcriptional regulatory protein QseB [Parasutterella excrementihominis YIT 11859] gi|329568189|gb|EGG50006.1| transcriptional regulatory protein QseB [Parasutterella excrementihominis YIT 11859] Length = 227 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + ++ LK E + V G I F +ILDLGL G Sbjct: 10 MRILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGL 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K TPV + + ++ D++ GL +GADDY+ KP++ +EL ARIRA++RRS Sbjct: 70 AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 129 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I G L++N + V G + L+ KEY ++ L+ R L++ LY+ Sbjct: 130 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLYN 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 I+V I LRKKLS ++ I+TV G GYVL Sbjct: 190 YESLIGSNAIEVHIHHLRKKLS-----EDSIKTVRGVGYVL 225 >gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 225 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D++ ++L L+ E F V GE+G+E + +D +ILD+ L + GF Sbjct: 3 RLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLEKVRIGNYDLVILDIMLPKMDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ D++ G++ GADDY++KPFN EL+ARIRA++RR+ Sbjct: 63 VCREIRTFS-NIPIIMLTARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRASN 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I GDL +N+ + V +G +I LT KE++++ LL+ TK+ L+ + Sbjct: 122 PYVKKKEEIRRGDLYINIPERAVYKRGKKIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + V + KLR+KL + YI T WG GY ++ Sbjct: 182 WGVDFYGDANTVTVHVRKLREKLEDDPANPQYIFTKWGAGYYMK 225 >gi|226229248|ref|YP_002763354.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226092439|dbj|BAH40884.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 226 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 131/223 (58%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD LA I L+ E++ V +LG+D I +DAI+LD+ L DI GF Sbjct: 1 MRLLVVEDDPKLARLIARGLREESYAVDTCELGKDAIAQAAVNSYDAIVLDVMLPDINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR I TPV +L+ ++ D++ GL SGADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 TVVQTLRTRDIRTPVLMLTSRDAVADRIVGLDSGADDYLVKPFDFGELLARLRALLRRPE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L + V G I LT KEY ++ELL+ L++ ++H++D Sbjct: 121 SLQAMQVRVADLEIDLQSHAVSRGGTPISLTAKEYALLELLARNVGRVLSRSDIVSHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++V++ +LR K+ + G I T G GY+L + Sbjct: 181 DNHDPFTNAVEVYVNRLRGKI-DRDGHAPLIHTRRGAGYILTD 222 >gi|315444804|ref|YP_004077683.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|315263107|gb|ADT99848.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 248 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 128/231 (55%), Gaps = 17/231 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ LA + L+ E F+ V D G D I L + ++ D +ILDLGL I G E Sbjct: 16 RALVVDDEVPLAEVVASYLQREQFDAVVADNGVDAIALARDFDPDVVILDLGLPGIDGLE 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R+LR + V +L+ + D V GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 76 VCRSLRTFSDAY-VVMLTARDTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRL 134 Query: 121 ------GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 G + + G LS+++ A+ V + I LT E+ +++ LS R L++ Sbjct: 135 LQSPPTGADREVTPPRRFGALSIDVAAREVRIADDPILLTRTEFDILQALSGRPGIVLSR 194 Query: 172 EMFLNHLYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L + RDEP V +++DV I LR+KL + A YI TV G GY Sbjct: 195 RQLLEII---RDEPWVGNDQLVDVHIGHLRRKLGDDAARPRYIATVRGVGY 242 >gi|24379561|ref|NP_721516.1| putative response regulator CiaR [Streptococcus mutans UA159] gi|290580438|ref|YP_003484830.1| putative response regulator [Streptococcus mutans NN2025] gi|24377506|gb|AAN58822.1|AE014950_5 putative response regulator CiaR [Streptococcus mutans UA159] gi|254997337|dbj|BAH87938.1| putative response regulator [Streptococcus mutans NN2025] Length = 224 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+EDD +L++SI L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKLLLVEDDLSLSNSIFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I+TPV I++ ++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGITTPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G+L+V+ T V G + L GKE+ ++ +N L K + ++ Sbjct: 121 KFNENNLTYGELTVDTATNTTMVNGKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL + GKN ++T+ GY+L++ Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKDTTFGKN-LQTLRSVGYILKD 222 >gi|237654696|ref|YP_002891010.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|237625943|gb|ACR02633.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 226 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + G DG+ L ++D I+LD+ L + G+ Sbjct: 1 MKILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALSGDYDLIVLDVMLPSLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV L+ IED+VRGL+ GADDY+ KPF E +AR+R ++RR R Sbjct: 61 AILQTLRRSGRENPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSEFLARVRTLLRRGR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + + +L ++L + V G RI LT KE+ ++ELL RK L + + + ++D Sbjct: 121 SHEPDTLRSANLELDLLRRRVTRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+V + +LR K+ + K I TV G GYVL Sbjct: 181 MNFDSDTNVIEVAVRRLRVKVDDPFEPK-LIRTVRGMGYVL 220 >gi|170021416|ref|YP_001726370.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC 8739] gi|169756344|gb|ACA79043.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] Length = 226 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTGAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A TPV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLS++L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGKRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYETK-LIQTVRGVGYML 221 >gi|92117426|ref|YP_577155.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91800320|gb|ABE62695.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 221 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ +A + L++ + V GED L ++ A+ILDLGL + G Sbjct: 1 MRVLVVEDDQRIAADVSRTLEASGYVVETVANGEDAWFLGDTEDYGAVILDLGLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R PV +L+ S ++V G+ +GADDY+ KPF EEL+AR+R+IVRRS Sbjct: 61 AVLKRWRANGRHMPVLVLTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH S++ G+++++ V +G I L+ EY++I L + ++++ ++Y Sbjct: 121 GHGSSVMTAGEITLDERQMKVTRRGVPIALSPLEYRLIAHLLRNRGRVVSQQELDENIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E + ++V + ++RKKL G + IET G GY++ E Sbjct: 181 HGEEHDSNTLEVLVGRVRKKL-----GADVIETRRGFGYLMPE 218 >gi|289167698|ref|YP_003445967.1| response regulator [Streptococcus mitis B6] gi|288907265|emb|CBJ22100.1| response regulator [Streptococcus mitis B6] Length = 224 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I+TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G++ VNL TV+V+ + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL +N ++T+ GY+L++ Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LKTLRSVGYILKD 222 >gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G +G++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIATTGPEGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEITPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|293604231|ref|ZP_06686639.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|292817456|gb|EFF76529.1| two component response regulator [Achromobacter piechaudii ATCC 43553] Length = 219 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + S+ L++E++ V G + +D I+LDLGL G Sbjct: 1 MRILLVEDDVMIGESVLDCLRAEHYAVDWVKDGNAAELALRTDTYDLILLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR K TPV I + ++ D++ GL +GADDYI KP++ +EL+AR+RA++RRS Sbjct: 61 GLLRDLRGRKDRTPVLIATARDAVSDRIAGLDAGADDYIVKPYDVDELLARMRALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ + ++++ A V G + LT +E+ ++E L R ++ LY Sbjct: 121 GRAEPVFEHEGITIDPQAHAAMVDGTPVALTAREWAVLEPLIARPGMIFSRAQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D ++V+I LRKKL G N I+ V G GYV+ Sbjct: 181 WKDSVSSNAVEVYIHGLRKKL-----GPNLIQNVRGVGYVI 216 >gi|254423150|ref|ZP_05036868.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190639|gb|EDX85603.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 236 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 13/235 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L ED+ +A +++ LK + F V D G+ E E+D I+LD+ + G Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR +TPV +L+ ++D+++GL GADDYI+KPF EEL+ARI A+VRRS Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR------------IHLTGKEYQMIELLSLRKNTT 168 G +L+ G ++ +TV Q + LT +E+ ++E L Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 T+ L H++ P ++DV I +LRKK+ + G + +IE+V G GY R+ Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKI-DMKGNERWIESVRGVGYRFRQ 234 >gi|190575791|ref|YP_001973636.1| putative two-component response regulator [Stenotrophomonas maltophilia K279a] gi|190013713|emb|CAQ47348.1| putative two-component response regulator [Stenotrophomonas maltophilia K279a] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA +I ++ V G + ++ FD ++LD+GL + G Sbjct: 1 MRLLLVEDNPDLADAIIRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R STPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++RR+R Sbjct: 61 RVLAGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRAR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G + A V + G I L +EY+++E+L R + K+ N L+ Sbjct: 121 GQASEVVQIGGFQFDNAAHRVSLNGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE I++++ +LRKKL AG I TV G GY+L Sbjct: 181 FDDEAGPNAIELYVGRLRKKL---AGAPLRITTVRGVGYLL 218 >gi|307151276|ref|YP_003886660.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306981504|gb|ADN13385.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 801 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 132/241 (54%), Gaps = 11/241 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDDK ++ L + V + GE G+EL + +D I+LDL L + G Sbjct: 1 MKILVVEDDKFTIEFLQTTLTVSGYTVDLASDGESGLELATLWNYDLILLDLQLPKVDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R LR K +TP+ IL+ S ++GL +GADDY+ KP + + L+A+IR++VRRS Sbjct: 61 KICRQLRALKNTTPILILTVESENNKIIQGLDAGADDYLIKPCDPKYLIAKIRSLVRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ SL+ GDL ++ + V Q + L +EY++++L + ++ L+ L+ Sbjct: 121 GY-DSLLSWGDLCLDPVSTQVTYQQQPLVLRRQEYKLLKLFLRNPHRVFSRSNILDLLWS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR----------ENAKDETC 230 D P + I LR KL ++ ++ IET++G GY L+ + A+D C Sbjct: 180 AEDFPSENAVTNLIKDLRNKLKDSGMTEDCIETLYGLGYRLKARPDKLLSKNQAARDNKC 239 Query: 231 E 231 E Sbjct: 240 E 240 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 14/130 (10%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF------DAIILDLGLTD 56 +++++DD + +++ +L + + +T L E F+E D ++LD+ + Sbjct: 493 VIIVDDDPTMLTALKNLLHP--WGLKITGLTEPS----HFWEVVTQTHPDLLLLDIEMPT 546 Query: 57 IPGFEVLRALRV-AKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 G E+ R +R A S P+ +++G + IE + ++GADD I KP ELVAR+ Sbjct: 547 FNGIELCRVVRQDANYSDLPILVVTGHTEIEYIQQAFEAGADDLIRKPIVPPELVARVLG 606 Query: 115 IVRRSRGHAQ 124 + RSR Q Sbjct: 607 RLERSRLRQQ 616 >gi|295676683|ref|YP_003605207.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295436526|gb|ADG15696.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 219 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ + +E L+ F V G ++ ++LDLGL + G Sbjct: 1 MRLLLVEDDELIGCGVEAGLRQAGFTVDWARDGHKASLALDTTQYALVVLDLGLPRVSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R A PV +L+ ++ D+V GL++GADDY+ KPF+ ELVAR RA++RR++ Sbjct: 61 ELLKRMRDAGNDVPVLVLTAKGTVVDRVGGLEAGADDYLGKPFDLTELVARCRALLRRAQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + LI +L+VN A+TV++ R+ LT +E+ ++ L ++ LY Sbjct: 121 GRSIDLIRYQNLTVNPAAQTVQIDEARVPLTSREWAILLQLLTNLGIPQSRSRLEESLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E E I+V + LRKKL G N I+TV GYV+ Sbjct: 181 WQEEIESNAIEVHVSNLRKKL-----GANLIKTVRNIGYVM 216 >gi|53721734|ref|YP_110719.1| response regulator protein [Burkholderia pseudomallei K96243] gi|52212148|emb|CAH38165.1| response regulator protein [Burkholderia pseudomallei K96243] Length = 223 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA S+ L S F V GE + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV IL+ S+ED+VRGL GADDY++KPF EL AR RA++RRS Sbjct: 61 DVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + G L+ + + + + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEHGRVECGPLAFDSVDRIFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL G I T+ G GY+L Sbjct: 181 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 218 >gi|260778334|ref|ZP_05887227.1| DNA-binding heavy metal response regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260606347|gb|EEX32632.1| DNA-binding heavy metal response regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 226 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD +A + + E + G DG+ +D I+LD+ L GF Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +TPV ILS S++++V+GLQSGADDY+ KPF EL+AR +++ RR + Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 121 GH-AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + AQS ++ +LS++L ++E G I L +E+ +I+L+ T ++K L + Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +P+ ++DV +C+LR K+ + I T+ G GYVL+ Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKV-DKGFDTPLIHTLRGVGYVLKSQ 225 >gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 233 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 126/225 (56%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F + + GE I +E + ++LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLIKECFETRICNDGESAINTFDTFEPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIR-TKSQVPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLRRYKP 124 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + + DL +N+ +V+ G R+ + KE +++ L+ N T+E Sbjct: 125 QVQEIQESDDKVVRYPDLEINMTNYSVKYMGERVDMPPKELELLYFLAASPNHVFTREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR+KLS+ + + T+WG GY Sbjct: 185 LDQIWGYEYIGDTRTVDVHIKRLREKLSDHEKWR--LATIWGIGY 227 >gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 224 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 126/223 (56%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ +A + L E + V + G +++ + D ++LDL L I G EV Sbjct: 4 ILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQPPDLVVLDLMLPGIDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121 R LR A P+ +L+ +I D+V GL++GADDY+ KPF EEL+ARIR + RR R Sbjct: 64 ARRLRAAS-DVPIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQRE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A +++ G L+++L A V + R+ LT KEY ++EL LT+++ + ++ Sbjct: 123 DAATVLRYGPLTMDLAAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVLTRDVIYDRVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E II+V++ LR+KL A G I TV G GY+LRE Sbjct: 183 NFGGESNIIEVYVRYLRQKL-EAHGEPRLIHTVRGVGYILREE 224 >gi|115352153|ref|YP_773992.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282141|gb|ABI87658.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 224 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L +EDD A+ I L + F V D G +G+ +DAI LD L G Sbjct: 1 MRVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L A+R I TPV +LS + +++++RGL++G DDY++KPF+ EL ARI ++RR + Sbjct: 61 AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q+L+ G L ++L ++ I L E++++E + T+T+ M Sbjct: 121 ASGVPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +P +IDV + +LRKK+ + G I+TV G GY+LR Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGAVPMIQTVRGSGYMLR 224 >gi|37523780|ref|NP_927157.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214785|dbj|BAC92152.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 611 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 119/225 (52%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL EDD+++A ++ L + V V GE L + +D I+LD+ L + G Sbjct: 1 MKVLLAEDDESVAEALREFLVHQRHLVDVAGDGETAWNLIELGNYDLILLDVLLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR PV +L+G+ + DKV GL +GADDY+ KP + EL ARIRA++RR Sbjct: 61 SLCRRLRSKGHRMPVLLLTGLDASTDKVAGLDAGADDYVVKPCDLSELAARIRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ + V QG +HLT KEY ++EL ++ ++HL+ Sbjct: 121 AALPPVLEWGPLRLDPNTCEVSYQGQPLHLTPKEYNLLELFLRGGRRVYSRRAIVDHLWP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + PE + + LR KL + IETV+G GY L+ A Sbjct: 181 FEEPPEEDTVKAHVKGLRHKLRAVGAPADLIETVYGLGYRLKPQA 225 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 43 YEFDAIILDLGLTDIPGFEVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100 + D ++LD+ + + G E+ R +R PV LS + E R GADD+++ Sbjct: 530 FRPDLLVLDVEMPHLSGIELCRIVRGDPQWQWLPVLFLSAHTDEETVERAWAGGADDFVA 589 Query: 101 KPFNKEELVARIRAIVRRSR 120 KP + L RI + R R Sbjct: 590 KPVSGPNLAMRILNRLERRR 609 >gi|222871904|gb|EEF09035.1| predicted protein [Populus trichocarpa] Length = 284 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 124/226 (54%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L+ V +V + E L EFD +ILDLGL + G Sbjct: 61 MRILIAEDDQVLADGLLRSLRGSGAVVSHVANGSEADTALMTSSEFDLLILDLGLPKMHG 120 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR + PV IL+ S+E++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 121 LEVLKKLRGRGDALPVLILTAADSVEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 180 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A S I G L + + + G + L+ +E ++E+L R ++K+ + L Sbjct: 181 MGGASSTIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 240 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + DE I+V+I +LRKK+ G I TV G GY L + A Sbjct: 241 EWGDEVSNNAIEVYIHRLRKKIER---GPIRIATVRGLGYCLEKIA 283 >gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 131/228 (57%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57 MR+L+ +DD +L + +L SE Y D +GIE + K Y+ FD +ILD+ + I Sbjct: 2 MRVLIADDDTSLLEQLREILASER---YTVDTASNGIEAMDKLYDAVFDLVILDVMMPHI 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L +R I+ PV +L+ +EDKV+GL GADDY++KPF+ +EL+AR+RA++R Sbjct: 59 DGLSLLEQIRKGGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALLR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G +++ L ++ ++ V G I LT KE+ ++E L KN +++ H Sbjct: 119 RSEGRHSAILDAKGLRLDTVSRKVTKDGEPIDLTQKEFLILEFLLYNKNRVVSRFSLAEH 178 Query: 178 LYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +P IDV I LR+KL + AG I+TV GY++ + Sbjct: 179 VWGDAFDPFTMSNFIDVHIKNLRRKLGD-AGNDKIIQTVRSVGYMIED 225 >gi|307151759|ref|YP_003887143.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981987|gb|ADN13868.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 226 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D L + L+L E + V V D G G++L +D +ILD L G Sbjct: 1 MRILLVDDQVELTQPLSLVLSREGYQVDVADNGRTGLQLALDNGYDLLILDWMLPYQSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + LR +TPV L+ +++D+V GL GADDY+ KPF +EL+AR+RA++RRS Sbjct: 61 DICQKLRTEGKTTPVLFLTAKDTLDDRVMGLDVGADDYLVKPFQLKELLARVRALLRRSP 120 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+ DL ++ D + QG I L+ KE ++ L + LT E Sbjct: 121 SFDLTVTQTRFKVADLELDSDNQVAYRQGRAISLSEKEVMLLSYFMLHPSQVLTHEQIYQ 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 HL+ +++P ++ + LR+K+ A G I TV+G+GY Sbjct: 181 HLWTEKEQPNSNVLAALVRLLRRKI-EAEGELPLIHTVYGKGY 222 >gi|332652719|ref|ZP_08418464.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16] gi|332517865|gb|EGJ47468.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16] Length = 236 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ EDD L S+ +L+ F+V GED +E + E+D +ILD+ + + G Sbjct: 13 MKLLVAEDDPKLLKSLVHILEHNRFSVDGVSNGEDALEYGQTGEYDGLILDIMMPGLDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I TP L+ + I +V GL +GADDY+ KPF+ EL+ARIRA++RR Sbjct: 73 QVLQTLRRNGIKTPALFLTARTEISQRVEGLDAGADDYLPKPFSTAELLARIRAMLRRKD 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+ G + +N + Q L+GKE+Q++E++ T + + F+ HL+ Sbjct: 133 TYLPDLLAIGSVILNRSTYQLVFQEKIQTLSGKEFQILEMMMQAPGTIIPTDRFITHLWG 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ V I LRKK+S A G I + GYVL Sbjct: 193 WDTNVDTSVVWVHISNLRKKIS-AIGAPMEIRFIRNAGYVL 232 >gi|15902751|ref|NP_358301.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae R6] gi|116515465|ref|YP_816195.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae D39] gi|182683717|ref|YP_001835464.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae CGSP14] gi|298503196|ref|YP_003725136.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|5830517|emb|CAB54564.1| response regulator [Streptococcus pneumoniae] gi|15458297|gb|AAK99511.1| Response regulator, transcriptional regulatory protein [Streptococcus pneumoniae R6] gi|116076041|gb|ABJ53761.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae D39] gi|182629051|gb|ACB89999.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae CGSP14] gi|298238791|gb|ADI69922.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] Length = 246 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 24 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I+TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 83 QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 142 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G++ VNL TV+V+ + L GKE+ ++ +N L K + L+ Sbjct: 143 KFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 202 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL +N ++T+ GY+L++ Sbjct: 203 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYLLKD 244 >gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 260 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 118/218 (54%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 38 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 97 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR G Sbjct: 98 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 218 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 255 >gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 232 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 134/227 (59%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ ++ ++L L+ E++ V V + G G+E+ + E+D ++LD+ L + G E Sbjct: 4 RILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEWDLVLLDVMLPGLNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV +L+ ++ DKV G + GA DY++KPF EEL+AR+R I+R Sbjct: 64 VLRRLRQGGNTVPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRIFAQ 123 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H + LI GDL+V L + V + + LT +E++++ L+ KN ++E L+ Sbjct: 124 HTKEVEGADLIKVGDLTVELRTRKVFRKELAVDLTPREFELLVYLAEHKNEEKSREDILS 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E ++DV+I LR+KL K I TV G GY+L+E Sbjct: 184 EVWGYDFIGETNLVDVYIRYLRQKLDKGFRYK-LIHTVRGVGYMLKE 229 >gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 260 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 118/218 (54%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 38 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 97 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR G Sbjct: 98 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 218 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 255 >gi|171322290|ref|ZP_02911124.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171092384|gb|EDT37742.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 224 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L +EDD A+ I L + F V D G +G+ +DAI LD L G Sbjct: 1 MRVLTVEDDAVTANEIVGELSARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L A+R I TPV +LS + +++++RGL++G DDY++KPF+ EL ARI ++RR + Sbjct: 61 AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q+L+ G L ++L ++ I L E++++E + T+T+ M Sbjct: 121 ASGVPQQTLLTVGALELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +P +IDV + +LRKK+ + G I+TV G GY+LR Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGAVPMIQTVRGSGYMLR 224 >gi|172061017|ref|YP_001808669.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171993534|gb|ACB64453.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 224 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L +EDD A+ I L + F V D G +G+ +DAI LD L G Sbjct: 1 MRVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L A+R I TPV +LS + +++++RGL++G DDY++KPF+ EL ARI ++RR + Sbjct: 61 AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q+L+ G L ++L ++ I L E++++E + T+T+ M Sbjct: 121 ASGVPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +P +IDV + +LRKK+ + G I+TV G GY+LR Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGAVPIIQTVRGSGYMLR 224 >gi|21222625|ref|NP_628404.1| response regulator [Streptomyces coelicolor A3(2)] gi|7242751|emb|CAB77324.1| putative response regulator [Streptomyces coelicolor A3(2)] gi|298285547|emb|CAD67559.2| regulatory protein [Streptomyces lividans] Length = 223 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG EV Sbjct: 1 MLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 61 CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 119 PEEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219 >gi|299137241|ref|ZP_07030423.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298600646|gb|EFI56802.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLK-SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+L++ED+ +AH+I L+ F V D G DG L +D ++LDL L + G Sbjct: 1 MRVLIVEDEVRIAHNIATALREGSGFAVDCADNGADGATLSAQGHYDLMLLDLMLPGLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++R +R STP+ +L+ S E V L +GADDY++KPF+ EL+AR++A++RR Sbjct: 61 MGIVRQVRARGDSTPILVLTARSEREKVVELLNAGADDYLTKPFDLGELLARVKALIRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G A LI G L VN +TV + L+ EY++ E L R ++K L HLY Sbjct: 121 KGVAHPLITFGRLRVNTIEQTVRCADLLVDLSPTEYRIFEYLIFRPRAIVSKRELLEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D R E +I+ + LRKKL A G + +ET+ GRGY L Sbjct: 181 DYRWEHHSNVIEAHVSNLRKKL-RAMGEEATVETIRGRGYRL 221 >gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 252 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 132/225 (58%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++ LA + L+ E ++V G ++ + E D ++LD+ L D G Sbjct: 21 VRVLVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIMLPDFDGL 80 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R + S PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS Sbjct: 81 EVMRRIRGRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 140 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 HA+ ++ GDL ++ D+ V IHLT E++++ L L+K L+ Sbjct: 141 AHAEQDDHVLEVGDLRMDEDSHEVWRGDTEIHLTATEFELLCYLMRNPRRVLSKPQILDR 200 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + I++++I LR+K+ G + I T+ G GYVL+ Sbjct: 201 VWNYDFGGQDNIVELYISYLRRKIDK--GREPMIHTMRGVGYVLK 243 >gi|171059687|ref|YP_001792036.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170777132|gb|ACB35271.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 221 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L ++ L+ + F V G + A +LDLGL G Sbjct: 1 MRILLVEDDPLLGDALRAGLRQQGFQVDWVREGPAAERELLTGAYQAAVLDLGLPGKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR KI+TPV +L+ +++ D+V L GADDY+ KP + +EL AR+RA+VRR+ Sbjct: 61 EVLADLRRRKIATPVLVLTARAAVRDRVHCLDLGADDYVVKPVDLDELAARLRALVRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G++ + ++ V +G RI L +E+ ++ L L LT++ HLY Sbjct: 121 GQVEDNLRVGEVELRPGSRDVFFRGERIALAVREFDLLHALLLNAGRVLTRDQIEQHLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V I LRKKL+ IETV G GY++ Sbjct: 181 WGREVESNAIEVHIHHLRKKLA-----PELIETVRGVGYMI 216 >gi|311103714|ref|YP_003976567.1| transcriptional activator protein IrlR 1 [Achromobacter xylosoxidans A8] gi|310758403|gb|ADP13852.1| transcriptional activator protein IrlR 1 [Achromobacter xylosoxidans A8] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ LA ++ L ++ V + G DG+ L +D I+LD+ L + GF Sbjct: 1 MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGVYDLIVLDVMLPGVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A+R K TP+ +L+ ++ED+VRGL+ GADDY+ KPF EL+AR++A++RR R Sbjct: 61 GVLAAVREQK-DTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ DL ++L + + G R+ LT KE+ ++ LL R+ L++ ++D Sbjct: 120 SQEPTLLRLADLELDLARRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +IDV + +LR KL + K + TV G GYVL Sbjct: 180 MNFDSDTNVIDVAVRRLRSKLDDPYDTK-LLHTVRGMGYVL 219 >gi|291550846|emb|CBL27108.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 131/227 (57%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ E V GE+ +E + E+D ++LD+ L + GF+ Sbjct: 4 KILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYARRCEYDLVLLDVMLPKLDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ S DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIREFS-DMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++V G++ ++ + + V + I+LT KE+ ++ELL++ N ++E LN Sbjct: 123 RKEEPAGSPVLVKGNMKIDCEGRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLN 182 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G D P + + +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 LIW-GYDYPGDARTVDVHIRRLREKIEQNPSEPKYVHTKWGVGYYFQ 228 >gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii F0264] gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii F0264] Length = 243 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K + I +LK E + V G++ ++ ++DA+ILD+ L GF Sbjct: 17 MRILVVEDEKKINDVIVKILKQEKYGVDSCYDGQEALDYIFSVDYDAVILDIMLPKKDGF 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R I TPV L+ +ED+V+GL GADDY+ KPF EEL+AR+R ++R+S Sbjct: 77 EVLKKIREKNIKTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRKSS 136 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +Q+ + +L+VN + TV I L+ KE+ ++E L K ++KE H+ Sbjct: 137 DTSQTGNIFKVENLTVNCNDHTVFRDETSIKLSAKEFAILEYLIRNKGKVVSKEKIEEHV 196 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D E I++V+I LRKK+ + K I T+ GY+L+ Sbjct: 197 WDFDYEGGSNIVEVYIKFLRKKIDDNFSPK-LIHTIRRVGYILK 239 >gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ +++ + ML++E F V V D G +E + D ++LDL L +PG E Sbjct: 3 RVLVVEDEDSISDPLSYMLRNEGFEVAVADTGPAALEEFDRHGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK + PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRQIR-AKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRQAA 121 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G + +++D V V G + L KE++++E+L LT+ ++ + Sbjct: 122 SDEPDGGALEAGPVRMDVDRHKVTVDGRPVELPLKEFELLEMLLRNSGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGTPVHLVTVRGLGY 222 >gi|150389766|ref|YP_001319815.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949628|gb|ABR48156.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 225 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 126/223 (56%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ LA ++ MLK N+ V + GE G++ +D I+LD+ L + G Sbjct: 1 MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R I+TPV +L+ I DKV GL SGADDY++KPF EEL+ARIRAI RR + Sbjct: 61 SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRR-K 119 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + GD+ +N + + + LT KE ++ L LR N +KE+ + + Sbjct: 120 GEVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E ++V+I LRKKL K I T+ G GY+L Sbjct: 180 WGFDSDVEHNHVEVYISFLRKKLLFLT-SKVVINTLRGVGYIL 221 >gi|302558338|ref|ZP_07310680.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus Tu4000] gi|302475956|gb|EFL39049.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus Tu4000] Length = 220 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ +D +ILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGTYDLLILDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVARI+A++RR Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + V GDL V+ A+ V + + LT KE+ ++E L LR ++K L H++D Sbjct: 121 AGASPVHVHGDLKVDTAARRVFLGEDEVALTAKEFSVLEHLVLRAGEVVSKADILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + I++V+I LR+KL I TV G GY L Sbjct: 181 FAYEGDPNIVEVYISALRRKLR-----ARLIRTVRGAGYRL 216 >gi|254507033|ref|ZP_05119171.1| DNA-binding response regulator [Vibrio parahaemolyticus 16] gi|219550028|gb|EED27015.1| DNA-binding response regulator [Vibrio parahaemolyticus 16] Length = 219 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L I L+ + ++ G D + +++AI+LDLGL + G Sbjct: 1 MKILVVEDEPRLGEQIVEALEQNGWTPELSTDGIDALYRATSEDWEAIVLDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+++R I+TP+ ILS ++ +V GL +GADDY +KPF EL+ARIRA +RR+ Sbjct: 61 TVLKSIRDENINTPIIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A +I G+LS++ V QG I LT E++++ +++ + H+Y Sbjct: 121 GNASPVIQNGNLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHHPEKVISRTELVEHIYK 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VFI ++RKK++ I+TV G GY L Sbjct: 181 QDFDRDSNTIEVFIGRIRKKIA-----PKVIKTVRGLGYQL 216 >gi|332359755|gb|EGJ37570.1| DNA-binding response regulator [Streptococcus sanguinis SK49] Length = 224 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKDLRAKGVATPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G++SVNL + V + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGEVSVNLSTNSTLVADKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + V +++V++ K+RKKL A KN + T+ GY+L++ Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTAFAKN-LHTLRSVGYILKD 222 >gi|254524477|ref|ZP_05136532.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219722068|gb|EED40593.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 229 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED+ LA +I ++ + D DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLVEDNPDLADAIIRRMRRSG---HAVDWQADGLAAASVLRYQNFDLVVLDIGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R STPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++R Sbjct: 58 DGLRVLAGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG A ++ G + A V + G I L +EY+++E+L R + K+ N Sbjct: 118 RARGQASEVVQIGGFQFDNAAHRVSLDGEPIELPNREYRLLEILVGRLGQVVGKDEIGNG 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ DE I++++ +LRKKL AG I TV G GY+L Sbjct: 178 LFGFDDEAGPNAIELYVGRLRKKL---AGAPLRITTVRGVGYLL 218 >gi|15900691|ref|NP_345295.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae TIGR4] gi|111658151|ref|ZP_01408848.1| hypothetical protein SpneT_02000676 [Streptococcus pneumoniae TIGR4] gi|148985849|ref|ZP_01818943.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP3-BS71] gi|148990411|ref|ZP_01821577.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP6-BS73] gi|148992467|ref|ZP_01822162.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP9-BS68] gi|148997122|ref|ZP_01824776.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP11-BS70] gi|149003430|ref|ZP_01828319.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP14-BS69] gi|149007683|ref|ZP_01831300.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP18-BS74] gi|149010570|ref|ZP_01831941.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP19-BS75] gi|149021667|ref|ZP_01835698.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP23-BS72] gi|168484457|ref|ZP_02709409.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC1873-00] gi|168486188|ref|ZP_02710696.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC1087-00] gi|168489819|ref|ZP_02714018.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae SP195] gi|168490895|ref|ZP_02715038.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC0288-04] gi|168492956|ref|ZP_02717099.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC3059-06] gi|168575461|ref|ZP_02721397.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae MLV-016] gi|169833866|ref|YP_001694261.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae Hungary19A-6] gi|194398608|ref|YP_002037443.1| CiaR response regulator TCS05 [Streptococcus pneumoniae G54] gi|225854314|ref|YP_002735826.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae JJA] gi|225856472|ref|YP_002737983.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae P1031] gi|225858608|ref|YP_002740118.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae 70585] gi|225861298|ref|YP_002742807.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae Taiwan19F-14] gi|237649444|ref|ZP_04523696.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CCRI 1974] gi|237821004|ref|ZP_04596849.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CCRI 1974M2] gi|298230630|ref|ZP_06964311.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255363|ref|ZP_06978949.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae str. Canada MDR_19A] gi|303255789|ref|ZP_07341830.1| CiaR response regulator TCS05 [Streptococcus pneumoniae BS455] gi|303260265|ref|ZP_07346236.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae SP-BS293] gi|303261471|ref|ZP_07347419.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae SP14-BS292] gi|303264139|ref|ZP_07350060.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae BS397] gi|303266251|ref|ZP_07352142.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae BS457] gi|303268689|ref|ZP_07354479.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae BS458] gi|307067403|ref|YP_003876369.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307127650|ref|YP_003879681.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae 670-6B] gi|61220925|sp|P0A4H7|CIAR_STRPN RecName: Full=Transcriptional regulatory protein CiaR gi|61220927|sp|P0A4H8|CIAR_STRR6 RecName: Full=Transcriptional regulatory protein CiaR gi|495276|emb|CAA54465.1| response regulator [Streptococcus pneumoniae] gi|14972274|gb|AAK74935.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae TIGR4] gi|147756822|gb|EDK63862.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP11-BS70] gi|147758613|gb|EDK65611.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP14-BS69] gi|147760838|gb|EDK67809.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP18-BS74] gi|147765051|gb|EDK71980.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP19-BS75] gi|147921995|gb|EDK73119.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP3-BS71] gi|147924316|gb|EDK75409.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP6-BS73] gi|147928784|gb|EDK79797.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP9-BS68] gi|147930128|gb|EDK81114.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP23-BS72] gi|168996368|gb|ACA36980.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae Hungary19A-6] gi|172042318|gb|EDT50364.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC1873-00] gi|183570751|gb|EDT91279.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC1087-00] gi|183571796|gb|EDT92324.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae SP195] gi|183574782|gb|EDT95310.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC0288-04] gi|183577079|gb|EDT97607.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC3059-06] gi|183578577|gb|EDT99105.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae MLV-016] gi|194358275|gb|ACF56723.1| CiaR response regulator TCS05 [Streptococcus pneumoniae G54] gi|225720388|gb|ACO16242.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae 70585] gi|225724185|gb|ACO20038.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae JJA] gi|225725849|gb|ACO21701.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae P1031] gi|225726696|gb|ACO22547.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae Taiwan19F-14] gi|291195955|emb|CBE70267.1| CiaR protein [Streptococcus pneumoniae] gi|291195959|emb|CBE70270.1| CiaR protein [Streptococcus pneumoniae] gi|301793955|emb|CBW36351.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301799813|emb|CBW32382.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801642|emb|CBW34340.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302597173|gb|EFL64278.1| CiaR response regulator TCS05 [Streptococcus pneumoniae BS455] gi|302637605|gb|EFL68092.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae SP14-BS292] gi|302638589|gb|EFL69053.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae SP-BS293] gi|302641749|gb|EFL72106.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae BS458] gi|302644181|gb|EFL74437.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae BS457] gi|302646544|gb|EFL76770.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae BS397] gi|306408940|gb|ADM84367.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306484712|gb|ADM91581.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae 670-6B] gi|327390155|gb|EGE88498.1| response regulator [Streptococcus pneumoniae GA04375] gi|332073074|gb|EGI83553.1| response regulator [Streptococcus pneumoniae GA17570] gi|332077215|gb|EGI87677.1| response regulator [Streptococcus pneumoniae GA17545] gi|332202662|gb|EGJ16731.1| response regulator [Streptococcus pneumoniae GA41317] gi|332203954|gb|EGJ18021.1| response regulator [Streptococcus pneumoniae GA47368] gi|332204809|gb|EGJ18874.1| response regulator [Streptococcus pneumoniae GA47901] Length = 224 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I+TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G++ VNL TV+V+ + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL +N ++T+ GY+L++ Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYLLKD 222 >gi|298247403|ref|ZP_06971208.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550062|gb|EFH83928.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MRIL+ ED +L I+ L E F+ YVTDL GED + +D +ILD+ L + Sbjct: 1 MRILVAEDHPSLGPDIQRGL--ERFH-YVTDLATDGEDALASALATPYDLLILDVMLPSL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEV R LR A + P+ L+ I+D+VRGL G DDY+ KPF EL AR+RA++R Sbjct: 58 DGFEVCRRLRSAHRTLPILFLTARGEIDDRVRGLDLGGDDYLVKPFVFRELEARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + + D++++ + ++ L+ +EY ++E L L++E +H Sbjct: 118 REKSATSATLQFEDITLDTQTREAWRGSRQLTLSSREYALLEFLLHHPRQVLSRETIADH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++DG + IIDV+I LR KL A+G + I+ + G GY L+ Sbjct: 178 VWDGEAPYQSNIIDVYIRYLRNKLC-ASGEPDVIQAIRGVGYQLK 221 >gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 223 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL ED+ AL LK+E F V G + ++ ++D +ILD+ + I G Sbjct: 1 MRILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDYDVVILDIMMPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + PV +L+ ++ D+V GL +GADDY++KPF EL ARIRA++RR+ Sbjct: 61 TVLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL+V + V G I L+ +E+ ++E L K L++ N ++D Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E I+DV+I LRKK+ + K I TV G GY LRE Sbjct: 181 FGFEGGSNIVDVYIRYLRKKIDDPF-EKKLIHTVRGAGYTLRE 222 >gi|91680588|emb|CAJ45044.1| PhoP protein [Streptomyces natalensis] Length = 223 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 127/221 (57%), Gaps = 6/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG EV Sbjct: 1 MLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 61 CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 119 PEEVAPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219 >gi|90577545|ref|ZP_01233356.1| Response regulator [Vibrio angustum S14] gi|90440631|gb|EAS65811.1| Response regulator [Vibrio angustum S14] Length = 219 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I L+ +V +L DGI+ +DAI+LDLGL + Sbjct: 1 MKILVVEDEVTLGEQIIAGLEQSG---WVAELSCDGIDALYRATSEPWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R ++ PV ILS + + +V GL +GADDY++KPF ELVAR+RA +R Sbjct: 58 DGITVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G+A +I G+LS++ V +G I LT E++++ L + +++ + H Sbjct: 118 RSTGNASPVIQAGNLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y + + I+VFI ++R+K+ G + I+TV G GY + N Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRRKI-----GNDVIKTVRGLGYRINAN 219 >gi|219667342|ref|YP_002457777.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537602|gb|ACL19341.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 234 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 13/228 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D++++ +E +LK E + + D GE +E + D +ILD+ L I G+E Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS I DK G GADDY+ KPF+ EL R++A++RRS Sbjct: 66 VCRTIRETS-KVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFD 124 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 QS+ I G+L +N ++ V V+G ++LT KE++++ ++ + T+E Sbjct: 125 KEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQ 184 Query: 174 FLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 H++ RDE + I VFI KLR+K+ YI+TVWG GY Sbjct: 185 LFAHMW--RDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGY 230 >gi|291562685|emb|CBL41501.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 232 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + + V G++ IE K E+D ++LD+ L GFE Sbjct: 3 RVLVVDDEKLIVKGIRFSLEQDGYEVDCAYDGDEAIERAKEREYDVVLLDVMLPGHDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR Sbjct: 63 VCQTIREFS-EMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNNK 121 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ S++ GDL ++ +++ V ++ I+LT KE+ ++ELL N ++E Sbjct: 122 KSGAAKRQKSSVVTEGDLKLDRESRRVFIKDKEINLTAKEFDLLELLVTNPNKVYSRESL 181 Query: 175 LNHLYDGRD--EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L +++ + +V+ +DV + +LR+K+ + Y+ T WG GY R Sbjct: 182 LEYVWGNKAMVSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYFFR 231 >gi|157150145|ref|YP_001450361.1| transcriptional regulatory protein CiaR [Streptococcus gordonii str. Challis substr. CH1] gi|157074939|gb|ABV09622.1| Transcriptional regulatory protein CiaR [Streptococcus gordonii str. Challis substr. CH1] Length = 224 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+ED+ L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDNLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +STPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKDLREKGVSTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++VNL T V G + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENNLSYGDVTVNLSTNTTLVNGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ K+RKKL N ++T+ GY+L+ Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTTFANN-MQTLRSVGYILK 221 >gi|90414398|ref|ZP_01222375.1| putative DNA-binding response regulator [Photobacterium profundum 3TCK] gi|90324511|gb|EAS41067.1| putative DNA-binding response regulator [Photobacterium profundum 3TCK] Length = 219 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 131/227 (57%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I L+S N ++ +L DGI+ +D I+LDLGL + Sbjct: 1 MKILVVEDEIILGEQIIDGLES---NGWIAELSSDGIDALYRATSEPWDVIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+++R ++TPV ILS + + +V GL +GADDY++KPF EL+AR+RA +R Sbjct: 58 DGLTVLKSIRDENVNTPVVILSARNELTQRVEGLNAGADDYLTKPFQMVELIARLRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G+A +I +LS++ V QG + LT E++++ L + +++ + H Sbjct: 118 RSTGNASPVIQVQELSLDTRTSNVLWQGQVVDLTALEFKVLSYLMHNTDKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y + + I+VFI ++R+K+ G + I+TV G GY + N Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRRKI-----GNDVIKTVRGLGYRINAN 219 >gi|325696865|gb|EGD38753.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327459810|gb|EGF06150.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] Length = 224 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++VNL + G + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDVTVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + V +++V++ K+RKKL KN + T+ GY+L++ Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTTFAKN-LHTLRSVGYILKD 222 >gi|76818875|ref|YP_337410.1| response regulator protein [Burkholderia pseudomallei 1710b] gi|76583348|gb|ABA52822.1| response regulator protein [Burkholderia pseudomallei 1710b] Length = 288 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 133/237 (56%), Gaps = 15/237 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD LA I L S F+V V G+ + + ++ +ILDL L + G E Sbjct: 57 RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 116 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R A + PV IL+ S + D+V GL++GADDY++KP LVAR RA++RR + Sbjct: 117 VCRRIR-AFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 175 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A +V G+L+++ +TV +G + L E+ ++ +L+ T L+++ L Sbjct: 176 GASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 235 Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L +DG D + +D I KLR++ +A+ + I+T+WGRGY+ +A D+ Sbjct: 236 KQLRGIEFDGID----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 288 >gi|153955619|ref|YP_001396384.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348477|gb|EDK35013.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] Length = 228 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K +A ++ +LK +++V + GE G++ +D IILD+ L + G Sbjct: 1 MRILMVEDEKYMAEAVAQILKRNHYSVDLEYNGESGLDCGLSGIYDIIILDIMLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +L+ LR I TPV +L+ EDKVRGL SGADDY++KPF EEL+AR+RA+ RR S Sbjct: 61 SLLKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRRKS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GD+ ++ + + LT KE Q++ELL K ++K + + L+ Sbjct: 121 ELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++V++ LRKKL N +I+TV G GYV+ Sbjct: 181 GYETDVEYNNVEVYVSFLRKKLRNIKSNV-FIQTVRGAGYVI 221 >gi|114766017|ref|ZP_01445029.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Pelagibaca bermudensis HTCC2601] gi|114541735|gb|EAU44774.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseovarius sp. HTCC2601] Length = 222 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 121/218 (55%), Gaps = 3/218 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ LA +I L+ E +V GE+ +L +F FD ++LD+ L G+EV Sbjct: 1 MLLVEDNDELAETILDRLRGEGHSVDRESNGEEANDLLRFSSFDLVLLDINLPGRSGYEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR++R +TPV +L+ S I+D+V GL +GADDY+ KPF+ EL AR R + RR G Sbjct: 61 LRSMRSRGDATPVIVLTARSEIDDRVVGLDAGADDYMVKPFDFRELSARCRVLARRRAGA 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ G + AK V G + L +E Q++E++ LTKE + LY Sbjct: 121 SSNVFAAGPFRFDRAAKQAHVDGVLLELRAREVQLLEIMLDNLGRMLTKEEVADKLYTFE 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + P + ++ + +LR+KL G I+T G GY+ Sbjct: 181 ETPSLNAVEQLVTRLRRKL---GGTPLVIKTARGLGYM 215 >gi|330958232|gb|EGH58492.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 227 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L S V D G DG+ ++D I LD L ++ G Sbjct: 3 RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 ++ LR ISTP+ ++S +S ++++VRGL++G DDY+ KPF +E+ AR+ ++RRS Sbjct: 63 IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A++++ DL +NL ++ G + L E++++E L +T+ M ++ Sbjct: 123 VSAAKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ + G I+TV G GYV+ E Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225 >gi|239931754|ref|ZP_04688707.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440123|ref|ZP_06579513.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343018|gb|EFE69974.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A +E L++ F V GE G E FD ++LD+GL D GF Sbjct: 3 RILIVEDEERIASFVEKGLRANGFTTTVVPDGEAGYEYALTGGFDLVVLDIGLPDRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 VLR LR ++++TPV +L+ S+ D V GL+ GADD+++KPF EEL+AR+R +R +R Sbjct: 63 VLRELRESRVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ +GDLS++L + + LT +E+ ++EL L++E L+H++ Sbjct: 123 APEVTVLKSGDLSLDLRTRRARAADRTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ LRKKL G ++TV G GY L Sbjct: 183 YDFDPGSNIVDVYVRALRKKL-----GAEKVQTVRGMGYRL 218 >gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 132/225 (58%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDIP 58 RIL+IED+ +A +L+ + F Y+ D GE+G++ + D +ILDL L ++ Sbjct: 7 RILVIEDEHQIA---DLLRRGLTFKGYLVDTAASGEEGLDKARDNPPDLVILDLMLPEMS 63 Query: 59 GFEVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ IL+ + EDK+ GL +GADDYI+KPFN EEL+ARIRA +R Sbjct: 64 GEEVCRRLREGLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLR 123 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + +S+I GDL++NL ++ ++ LT +E+ ++E L+ + ++KE Sbjct: 124 RRQPQEKSIIRVGDLTLNLASREAMRGERKLDLTTREFDLLEFLARNEGHVVSKEAIFER 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + + V+I LR KL+ A G + I T+ G GY+LR Sbjct: 184 VWGYSFDIDSDAVKVYISYLRSKLT-AGGEPDMIHTIRGIGYMLR 227 >gi|16125542|ref|NP_420106.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221234288|ref|YP_002516724.1| two-component response regulator protein [Caulobacter crescentus NA1000] gi|13422630|gb|AAK23274.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220963460|gb|ACL94816.1| two-component response regulator protein [Caulobacter crescentus NA1000] Length = 242 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 134/236 (56%), Gaps = 12/236 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-----FYEFD---AIILDL 52 M IL++EDD +A +E LK+E + V V G G+E + E D I+LDL Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 L + G EV + LR + + TPV +L+ + +++D+V GL++GADDY+ KPF+ EEL+ARI Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 113 RAIVRRS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 A++RRS R A + G++ ++ V G + LT +E ++EL L Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E L++++ ++P ++DV++ +LR K+ + ++I TV G GY L + Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKI-DPPLASSFITTVRGLGYRLEPDP 235 >gi|239820932|ref|YP_002948117.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239805785|gb|ACS22851.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 224 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 124/221 (56%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK LA ++ L V + GE+ +D ILD+GL + G Sbjct: 1 MRILLVEDDKVLADALSRALVQSAHAVDIVSTGEEADHALALGIYDLAILDIGLPKLSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR K + PV +L+ +++D+VRGL GADDY++KPF+ EL AR+RA++RRS Sbjct: 61 DVLRRLRARKSTMPVLMLTAFDTLQDRVRGLDLGADDYLAKPFDLPELEARVRALLRRS- 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G L + + V + L+ +E ++ELL +R+ + KE +NHLY Sbjct: 120 TNSTPYLEHGLLRFDTVGRRVFYDKKPLDLSPRELAVLELLMMREGRVVGKEQMVNHLYG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE I+V + +LRKKL I TV G GY++ Sbjct: 180 WGDEVGDNAIEVNVYRLRKKLEPLG---CEIRTVRGMGYLM 217 >gi|218248373|ref|YP_002373744.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060302|ref|YP_003138190.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218168851|gb|ACK67588.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256590468|gb|ACV01355.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 231 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 126/229 (55%), Gaps = 14/229 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 MRILL+ED+ L ++I+ L N Y+ D +DG E + E + I D L Sbjct: 1 MRILLVEDESDLGNAIKRTLIQHN---YIVDWAQDGKEGLDYLEIGLSHYTLGIFDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G +++R +R K S P+ +L+ S EDKV GL +GADDY+ KPF EL+AR+RA+ Sbjct: 58 KLSGVDLIRKVRQHKSSLPILMLTAKDSEEDKVIGLDAGADDYLVKPFGMAELLARLRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLT 170 RRS + G+L+++ T+ Q I LT KE+Q++E N +T Sbjct: 118 QRRSPQINPQQLKVGNLTLDYSTYTIFCQDKEGDNQTIALTNKEFQLLEYFLHHPNQIVT 177 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ L+ L++ EP ++ I LR+KL+ GG N+IET++G GY Sbjct: 178 RDQLLSQLWEWESEPMSNVVAAQIRLLRRKLA-PYGGDNWIETIYGLGY 225 >gi|161505227|ref|YP_001572339.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866574|gb|ABX23197.1| hypothetical protein SARI_03365 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 222 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 123/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAERSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ + G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELAVGNLTLNMGRHQAWMDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|332286933|ref|YP_004418844.1| two component response regulator [Pusillimonas sp. T7-7] gi|330430886|gb|AEC22220.1| two component response regulator [Pusillimonas sp. T7-7] Length = 229 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ +A +E L F L E+DA+I+DL L D G Sbjct: 1 MRVLLVEDEREMAAWLERALAQSGFLPEHAPDARTAESLLAASEYDAVIMDLRLPDKHGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR +R TPV IL+ +++D+VRGL GADD+++KPF EEL AR+ A+VRRSR Sbjct: 61 VLLREMRNRGDVTPVLILTAQGALQDRVRGLNLGADDFLTKPFALEELEARLAALVRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G L + +++ ++G +HLT +E + +L R + K N +++ Sbjct: 121 GRQAPRMQCGSLIYDSESRAFGLEGAILHLTPREQAALAVLITRSGMPVEKSQLFNRVFE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + I+V + +LRKKL AG +I TV G GY+L Sbjct: 181 HDSEAGLDAIEVVLHRLRKKL---AGSDVHIVTVRGLGYML 218 >gi|256822513|ref|YP_003146476.1| two component heavy metal response transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] gi|256796052|gb|ACV26708.1| two component heavy metal response transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 230 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ + L F V + G DG L FD IILD+ L D+ G+ Sbjct: 1 MKLLLVEDEPKTGDYLRQGLGEAGFVVVLVRNGLDGHHLAMTESFDLIILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ALR TPV L+ S++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QIVKALRQIGCRTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + DL+++L VE G++I+L+ KE+ ++ELL R+ L + + + ++ Sbjct: 121 SPPSSNQLKISDLTLDLIKHRVERSGYKINLSHKEFCLLELLVRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I TV G GY+L Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDNFETK-LIHTVRGMGYML 221 >gi|167827447|ref|ZP_02458918.1| response regulator protein [Burkholderia pseudomallei 9] Length = 253 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 133/237 (56%), Gaps = 15/237 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD LA I L S F+V V G+ + + ++ +ILDL L + G E Sbjct: 22 RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R A + PV IL+ S + D+V GL++GADDY++KP LVAR RA++RR + Sbjct: 82 VCRRIR-AFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 140 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A +V G+L+++ +TV +G + L E+ ++ +L+ T L+++ L Sbjct: 141 GASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 200 Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L +DG D + +D I KLR++ +A+ + I+T+WGRGY+ +A D+ Sbjct: 201 KQLRGIEFDGID----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 253 >gi|290769853|gb|ADD61625.1| putative protein [uncultured organism] Length = 225 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 119/224 (53%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+ L S+ L+ + + GE +EL +D ++LDL L + G Sbjct: 1 MRLLLIEDEPTLRESVAKKLRRSGYEMDDCGDGETALELLAAERYDLVLLDLNLPKVNGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + TPV ILS S I DKV GL +GA+DY++KPF+ EL AR+R++ RR Sbjct: 61 TVLRTLRKTDLETPVLILSARSEISDKVEGLDAGANDYLAKPFHLAELEARVRSLTRRQF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+ + ++ G I LT KE ++E L L + +++E + H++D Sbjct: 121 IQRDVCLRCGRLTFDTKSRLAMADGQPIPLTRKESGVLEYLLLHQGRPVSQEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + I V I LRKKL A G + I G GY L EN Sbjct: 181 SSVDAFSNSIRVHISALRKKLRTAL-GYDPIRNRIGEGYELEEN 223 >gi|27375415|ref|NP_766944.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27348552|dbj|BAC45569.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 324 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD A +I L F V G DG++ + DA+I+D L + G Sbjct: 101 RILLIEDDAETAEAIVAELADRGFEVQWAGDGVDGLDRARTSSPDAMIVDRMLPGMDGLA 160 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ ALR ++ TPV +LS + +++D+VRGL+ G DDY++KPF ELVARI A++RR Sbjct: 161 VIEALRKDQVRTPVLVLSALGAVDDRVRGLRMGGDDYLTKPFAIIELVARIEALLRRPTD 220 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++++ G L ++L +T + L +E++++E + R + LT+ M L +++ Sbjct: 221 SRETILHVGPLEIDLIERTARRGERELELLPREFRLLEYMMRRNDQLLTRAMLLEEVWNY 280 Query: 182 RDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P +IDV + +LR K+ + G I V G G+VLR Sbjct: 281 KFVPATTNLIDVHMGRLRHKV-DGPGEVQLIHNVRGSGFVLR 321 >gi|291166422|gb|EFE28468.1| DNA-binding response regulator [Filifactor alocis ATCC 35896] Length = 227 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 133/222 (59%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 M++L++ED+ ++ + L K E F+V +D G I++ + + ILD+ + DI G Sbjct: 1 MKMLILEDEMSIRSFVTLNFKREGFDVLESDTGLSAIKIFDENPDIQLAILDVMIPDIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 FEVL+ +R + + +L+ + +DKV GL+ GADDYI KPF+ EL+AR+R+++RR Sbjct: 61 FEVLKYIRSKSKNVGIIMLTARTHEQDKVMGLEYGADDYIGKPFSPAELIARVRSLIRRL 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++IV+G +++ + I LT KE++M++L ++ +L+++ LN Sbjct: 121 SIKDENVNVIVSGRFKLDVANRKFFRDETEIELTPKEFEMLQLFLTNRHKSLSRDYILNQ 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++K++DV I ++RKK+ A Y++T+WG GY Sbjct: 181 IWGDNYFGDLKVVDVNIRRIRKKIEEDAANPTYLKTIWGYGY 222 >gi|302554937|ref|ZP_07307279.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302472555|gb|EFL35648.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 238 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 126/229 (55%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++DD +A + + + E + GED + + D ++LDL L + GF Sbjct: 10 VRLLVVDDDPPIADLVATVARYEGWEAVTAYSGEDALRRAADFHPDIVVLDLMLPGVDGF 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + PV L+ + D+V GL G DDY+ KPF EEL+AR+R ++RRS Sbjct: 70 GVLDRLRASGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 129 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G A +S++ GDL+++ D + V + LT EY+++ L + T LTK L+H+ Sbjct: 130 GPAFQRSVLRVGDLTMDEDTREVRRGDKLLSLTPTEYEVLRYLMRKSPTVLTKAQILDHV 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226 ++ ++++ + +LR+KL G I TV G GYVLR+ ++ Sbjct: 190 WEYGFGGRSNVVELVVSRLRRKLDETDDGAAPLIHTVRGFGYVLRQASE 238 >gi|261408579|ref|YP_003244820.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285042|gb|ACX67013.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 235 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED++ ++ + L+ + F+ ++T+ DG++ + + D IILDL L D G EV Sbjct: 7 VLIIEDERDISRIVNDYLRVQGFSSFITENARDGLQEVRNRQPDFIILDLTLPDADGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R LR S P+ ILS SS DKV L GADDY++KPF+ ELVAR++A +RR Sbjct: 67 CRELRTLT-SAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMVDP 125 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + Q L+ G LS++ A+ V I L+ KE+ ++ L+ N TK L+ Sbjct: 126 KLQATTQLLLRFGTLSIDKGARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQ 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E I V++ +LR+KL + YI TVWG GY Sbjct: 186 VWGYSAYVEDNTITVYVRRLREKLERSGIKSAYITTVWGVGY 227 >gi|299134457|ref|ZP_07027650.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298591204|gb|EFI51406.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 220 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD +++ +++ L + V DG EFDA++LD+ L D G Sbjct: 1 MRILIVEDDPVISNGLKVGLGMFGATLDVVSTCADGRAAAALSEFDALVLDVMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR TPV +L+ + I D+++GL SGADDYI KPF+ +EL AR+RAI RR Sbjct: 61 DLLTELRAGGDRTPVLMLTALDEIADRIKGLDSGADDYIGKPFDLDELAARVRAICRRQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + L+++ TV V L+ +E+ ++ L ++K + LY Sbjct: 121 GRASPCLTFNGLTLDPAQMTVTVNDETNPLSRREFSILSALMSHPGRVMSKNEIESRLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++E E ++V I KLR K+ G+ IET+ G GY +R Sbjct: 181 WQEEIESNTVEVHIHKLRTKV-----GREKIETIRGIGYRMR 217 >gi|239928855|ref|ZP_04685808.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437180|ref|ZP_06576570.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340075|gb|EFE67031.1| response regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ +D ++LD+ L + G+ Sbjct: 1 MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVVLDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR++A++RR + Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRQ 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S + V GDL V+ A+ V + + LT KE+ ++E L LR ++K L H++ Sbjct: 121 GAGASPVHVHGDLRVDTAARRVFLGEDEVALTAKEFSVLEQLVLRAGEVVSKAEILEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E + I++V++ LR+KL I TV G GY L Sbjct: 181 DFAYEGDPNIVEVYVSALRRKLR-----AGLIRTVRGAGYRL 217 >gi|296130228|ref|YP_003637478.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296022043|gb|ADG75279.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 240 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 18/227 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL EDD A+A + L E ++V V G+ I+ D ++LDLGL D+ G + Sbjct: 3 QVLLAEDDPAIAEPLARALGREGYDVRVQGTGQGAIDGAA--SADLVVLDLGLPDMDGLD 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R ++TPV +L+ + D V GL +GADDY++KPF EL+AR+RA++RR+ G Sbjct: 61 VARAIRSQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTVG 120 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKE 172 HAQ++ V D++ + QG R +HLT KE+ ++ +L T +++E Sbjct: 121 DPADEDELHAQNVRV--DVAAHR-----AFQGERELHLTAKEFDLLRVLVAAAGTVVSRE 173 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ K +D+ + LR+KL + A YI TV G G+ Sbjct: 174 TLMREVWGSDPTGSTKTLDMHVSWLRRKLGDDANAPRYISTVRGMGF 220 >gi|297567507|ref|YP_003686479.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851956|gb|ADH64971.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR+LL+EDD LA I L+ + V G + + +D +ILD+ L + P Sbjct: 1 MRVLLVEDDPRLAALIAEGLRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQA 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF++ R LR + P+ L+ ++ K+ GL +G DDY++KPF+ EL ARIRA+VRR Sbjct: 61 GFDLARTLRNQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRR 120 Query: 119 SRGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++G A +LI + ++L A V G + LT +EY ++E L L ++ + Sbjct: 121 AKGEAANLIPLPKGYVLDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIER 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ G E + K++DV++ LR+KL G++++ETV G GY L Sbjct: 181 VWPGESEVDTKVVDVYVSSLRRKL-----GEDFVETVRGLGYRL 219 >gi|219855998|ref|YP_002473120.1| hypothetical protein CKR_2655 [Clostridium kluyveri NBRC 12016] gi|219569722|dbj|BAH07706.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 230 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K +A ++ +LK +++V + GE G++ +D IILD+ L + G Sbjct: 3 MRILMVEDEKYMAEAVAQILKRNHYSVDLEYNGESGLDCGLSGIYDIIILDIMLPKMDGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +L+ LR I TPV +L+ EDKVRGL SGADDY++KPF EEL+AR+RA+ RR S Sbjct: 63 SLLKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRRKS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GD+ ++ + + LT KE Q++ELL K ++K + + L+ Sbjct: 123 ELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKLW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++V++ LRKKL N +I+TV G GYV+ Sbjct: 183 GYETDVEYNNVEVYVSFLRKKLRNIKSNV-FIQTVRGAGYVI 223 >gi|86751792|ref|YP_488288.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574820|gb|ABD09377.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 221 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+ EDD +A + L + GE+ ++ AIILDLGL + G Sbjct: 1 MRVLVAEDDSRIAADLARGLTEAGYIAECVADGEEAWFRGDTEDYAAIILDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R A TPV IL+ S ++V G+ +GADDY+ KPF EEL+AR+R+IVRRS Sbjct: 61 TILKRWREAGRRTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S++ GDL+++ V ++G ++ L+ EY++ L L + +++ ++Y Sbjct: 121 GHASSVVCIGDLTLDERQMQVSLRGQKVALSPLEYRLASYLVLHRGRVVSQFELNENIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + I+V + ++RKKL G IET G GY++ Sbjct: 181 QDDAHDSNAIEVLVGRVRKKL-----GPELIETRRGFGYIV 216 >gi|53721717|ref|YP_110702.1| response regulator protein [Burkholderia pseudomallei K96243] gi|126443912|ref|YP_001062018.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126458594|ref|YP_001074970.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134278879|ref|ZP_01765592.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|167722901|ref|ZP_02406137.1| response regulator protein [Burkholderia pseudomallei DM98] gi|167741882|ref|ZP_02414656.1| response regulator protein [Burkholderia pseudomallei 14] gi|167819064|ref|ZP_02450744.1| response regulator protein [Burkholderia pseudomallei 91] gi|167848919|ref|ZP_02474427.1| response regulator protein [Burkholderia pseudomallei B7210] gi|167897524|ref|ZP_02484926.1| response regulator protein [Burkholderia pseudomallei 7894] gi|167905878|ref|ZP_02493083.1| response regulator protein [Burkholderia pseudomallei NCTC 13177] gi|167914184|ref|ZP_02501275.1| response regulator protein [Burkholderia pseudomallei 112] gi|167922095|ref|ZP_02509186.1| response regulator protein [Burkholderia pseudomallei BCC215] gi|217419131|ref|ZP_03450638.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|237507446|ref|ZP_04520161.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242312817|ref|ZP_04811834.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254183056|ref|ZP_04889648.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254189719|ref|ZP_04896228.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254193143|ref|ZP_04899578.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254264092|ref|ZP_04954957.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254299993|ref|ZP_04967439.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|52212131|emb|CAH38148.1| response regulator protein [Burkholderia pseudomallei K96243] gi|126223403|gb|ABN86908.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126232362|gb|ABN95775.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134249298|gb|EBA49379.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|157810175|gb|EDO87345.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157937396|gb|EDO93066.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|169649897|gb|EDS82590.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|184213589|gb|EDU10632.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217398435|gb|EEC38450.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|234999651|gb|EEP49075.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242136056|gb|EES22459.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254215094|gb|EET04479.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 240 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 133/237 (56%), Gaps = 15/237 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD LA I L S F+V V G+ + + ++ +ILDL L + G E Sbjct: 9 RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R A + PV IL+ S + D+V GL++GADDY++KP LVAR RA++RR + Sbjct: 69 VCRRIR-AFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 127 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A +V G+L+++ +TV +G + L E+ ++ +L+ T L+++ L Sbjct: 128 GASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 187 Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L +DG D + +D I KLR++ +A+ + I+T+WGRGY+ +A D+ Sbjct: 188 KQLRGIEFDGID----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240 >gi|293610947|ref|ZP_06693246.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826599|gb|EFF84965.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 224 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 11/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A S +L+ F V + G DG+ +FD I+LDLGL + G + Sbjct: 3 KILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPMMDGMQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + +TPV I+S ++++V GL GADDY+ KP+ +EL+ARI A++RRS Sbjct: 63 VLKQIR-QRAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGV 121 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 AQ L+ +GDL +N++ +G RI L+ +E+ ++ L N +K + Sbjct: 122 EAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LYD + I+V++ LR KL GK++I T+ G GY L Sbjct: 182 KLYDFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 221 >gi|330810224|ref|YP_004354686.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378332|gb|AEA69682.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 227 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L +V D G +G+E ++D I LD L ++ G Sbjct: 3 RILTIEDDAVTAREIVAELTRNGLDVDWVDNGREGLERAVSGDYDLITLDRMLPELDGLV 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR ++TP+ ++S +S ++++VRGL++G DDY++KPF +E+ AR+ ++RR+ G Sbjct: 63 IVTTLRTMGVATPILMISALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRRNNG 122 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ DL +NL ++ G + L EY+++E L L++ M ++ Sbjct: 123 AREPETVLRVADLELNLISREASRNGQLLSLLPTEYKLLEFLMRNSGQILSRMMIFEEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ + G + I TV G GYV+ E Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DPPGLEPLIRTVRGSGYVIAE 225 >gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family [candidate division TM7 genomosp. GTL1] gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family [candidate division TM7 genomosp. GTL1] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 125/220 (56%), Gaps = 1/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ +A +++ L+ E F V V GE G+ + +D I+LD L + G Sbjct: 1 MRILVVEDERKIALALKKGLEQEAFAVDVVHDGESGLSYAEDDSYDLIVLDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R LR + TP+ +L+ I D+V GL +GADDY+ KPF EEL+ARIR+++RR + Sbjct: 61 EICRQLRESGAKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRRPQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL++N V+ + LT KE+ ++E L + +TK+M LNH++D Sbjct: 121 DLLGEVLQIGDLTLNTITYEVKRGTTPVSLTQKEFALLEYLMRSQGRVVTKDMILNHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219 + I+V+I LR K+ G I T G GY Sbjct: 181 YDADILPNTIEVYIGYLRSKVERPFEGHPRLIHTQRGFGY 220 >gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ LA IEL LK E +NV V + G G+ + + D I+LD L + G ++ Sbjct: 6 ILLVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNARESDPDLILLDWMLPGMSGVDI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR + P+ +L+ I D+V GL +GADDYI KPFN EEL+AR+RA +RR++ Sbjct: 66 CKRLRQTGNNVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNQQD 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L+ DL++N + + V I LT KE+ ++E L LT++ L ++ Sbjct: 126 DPDLLEFLDLTLNSNTRQVFRGDRLIELTAKEFDLLEYLMSHPKQVLTRDQILERVWGYD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL A K I+TV G GYVLR+ Sbjct: 186 FMGDSNIIEVYVRYLRLKLE-AEKEKRIIQTVRGVGYVLRD 225 >gi|301156196|emb|CBW15667.1| DNA-binding response regulator in two-component regulatory system with QseC [Haemophilus parainfluenzae T3T1] Length = 222 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + + +++ L F V + TD G+ G+ +DA++LDL L + G Sbjct: 1 MRVLLVEDDPLIGNGLQIGLTKSGFIVDWFTD-GQSGLNALIGAPYDAVVLDLTLPKLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+ R PV IL+ +++++++G+Q GADDY+ KPF E+V R++A++RR Sbjct: 60 LDVLKQWRSNNQDVPVLILTARDTLDERIKGIQQGADDYLCKPFALAEVVVRLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + I G++ ++ + + I LTG+EY+++EL L K L++ L Sbjct: 120 YGQVKPQIEHGNVKLDPAQRKAWLNEDEITLTGREYKLLELFMLNKERVLSRATIEEKLS 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E +DV I LR+KL GK +I TV G GY L Sbjct: 180 NWDEELSSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216 >gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 241 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 130/232 (56%), Gaps = 4/232 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G + ++ + +DA+ILDL L ++ G E Sbjct: 9 QILLVEDDHDIAALLRLNLEDEGYAITHEPDGGNALQRLETQPWDAVILDLMLPNVDGLE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R P+ I+S SS D++ GL++GADDY++KPF+ +EL+ARI+A+ RR + Sbjct: 69 ICRRIRQMTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQA 128 Query: 121 -GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G AQ+ +I L+++ A+TV + G + LT +E++++ + ++ L Sbjct: 129 MGQAQTDGIIQAHGLTIDPLARTVRLNGQHVDLTPREFELLYFFARHPGEVFSRLALLEQ 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ + E ++ I +LR K+ A + TVWG+GY E D + Sbjct: 189 VWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAEQNHDAS 240 >gi|283798726|ref|ZP_06347879.1| DNA-binding response regulator DltR [Clostridium sp. M62/1] gi|291073407|gb|EFE10771.1| DNA-binding response regulator DltR [Clostridium sp. M62/1] gi|295090823|emb|CBK76930.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] gi|295116054|emb|CBL36901.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 224 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+ AL+ ++ +L+ N++V G+ +E + +D +ILD+ + I G Sbjct: 1 MRLLLAEDEAALSKALTAILERNNYSVDSVCDGQAALEYLESDNYDGVILDIMMPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR PV +L+ S ++DKV GL +GA+DY++KPF+ EL+ARIRA+ R Sbjct: 61 TVLRKLRQKGSLVPVLLLTAKSEVDDKVLGLDAGANDYLTKPFHSRELLARIRAMTRTQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H S + G++ +N + + L KE+QM+E+L ++ E F+ ++ Sbjct: 121 AHPDSQLQMGNVVLNRASFELSTPSGSYRLANKEFQMMEMLMSNPKCLISSERFMEKIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E+ ++ V+I LRKKL+ A +I+ GY L E Sbjct: 181 YDSEAEINVVWVYISYLRKKLA-ALHATIHIKASRNAGYSLEE 222 >gi|221064867|ref|ZP_03540972.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220709890|gb|EED65258.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 229 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 129/226 (57%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ LA ++ L E F V G DG+ L +D IILD L I G Sbjct: 1 MKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR ++ TPV +L+ + +ED+VRGLQ+GADDY+ KPF ELVARI A++RR Sbjct: 61 AVLAALRQSR-QTPVLMLTARAQVEDRVRGLQAGADDYLVKPFAFSELVARIHALLRRGL 119 Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQ +++ DL ++L G R+ LT KE+ ++ LL R+ L++ Sbjct: 120 -QAQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELA 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D + E +++V + +LR KL +A + + TV G GYVL Sbjct: 179 SQVWDMNFDSETNVVEVAVRRLRLKL-DAPFEQPLLHTVRGMGYVL 223 >gi|296274651|ref|YP_003657282.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296098825|gb|ADG94775.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 222 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 134/220 (60%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD + + ++ L+ E++++ + GE+G+ L +D I+LD+ L + G Sbjct: 1 MKILIIEDDVKIVNFLKKGLEEESYSIDYSHNGEEGLYLASVNSYDLILLDIMLPLLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR KI+TP+ +L+ SIED ++GL GA+DY+ KPF+ EL+ARIR + R++ Sbjct: 61 EVCKKLRAEKINTPIIMLTAKDSIEDTIKGLDIGANDYLPKPFSFSELLARIR-VQLRAK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + DL ++L AKT + G I LT KE+ ++E L +N L+ E L + + Sbjct: 120 DSTQTTLKIADLELDLLAKTAKRAGEDITLTAKEFSLLEYLIKNQNKVLS-ETVLASMLN 178 Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DE + +++V+I +LR K+ + K I+T+ G G+ Sbjct: 179 NMDESNISNLVNVYIYRLRNKI-DKPYEKKLIKTIRGLGF 217 >gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus ATCC 53653] gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G +G++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|238028534|ref|YP_002912765.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] gi|237877728|gb|ACR30061.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 252 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL +PG Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVCSGVDADTALSMQTFDLLILDLGLPKMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 DVLRRLRARNSVLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++I G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVIRHGSLSFDQVGRLAYANERVLDLSARELGLLEVLLQRVGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSGA---RIATVRGLGYCLEKAAP 223 >gi|260548960|ref|ZP_05823182.1| two-component system DNA-binding response regulator [Acinetobacter sp. RUH2624] gi|260408128|gb|EEX01599.1| two-component system DNA-binding response regulator [Acinetobacter sp. RUH2624] Length = 224 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 11/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A S +L+ F V + G DG+ +FD I+LDLGL + G + Sbjct: 3 KILMIEDDFMIAESTTTLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPMMDGMQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + +TPV I+S ++++V GL GADDY+ KP+ +EL+ARI A++RRS Sbjct: 63 VLKQIR-QRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGV 121 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 AQ L+ +GDL +N++ +G RI L+ +E+ ++ L N +K + Sbjct: 122 EAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LYD + I+V++ LR KL GK++I T+ G GY L ++ Sbjct: 182 KLYDFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRLGQS 224 >gi|269793520|ref|YP_003312975.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095705|gb|ACZ20141.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 217 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 128/219 (58%), Gaps = 6/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ + ++ L +E F V V G G++L + +DAI+LD+ L + G+ Sbjct: 1 MRILVVDDEVVMTRALRRGLGAEGFAVDVAHDGRTGLDLARDGAYDAIVLDIMLPGLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++ TPV +LS D GL GADDY++KPF LVAR+RA++RR Sbjct: 61 DVLQTLRAEEVWTPVLLLSAKDGDHDVADGLDVGADDYLTKPFAFVVLVARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GD++++ + V ++G + T +E+ ++E L R + K +H++D Sbjct: 121 VPRPVVLTVGDVALDPASHVVTLRGEPVATTAREFALLEYLLRRPGQVVGKVELRDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G D ++ +++V++ LR+KL G++ + TV G GY Sbjct: 181 G-DGEDLNVVEVYVGYLRRKL-----GRDVVATVRGAGY 213 >gi|254410208|ref|ZP_05023988.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183244|gb|EDX78228.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 218 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 4/220 (1%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 +EDD+ + ++E L +++ + V GE+G+ L +D I+LD+ L I G + R Sbjct: 1 MEDDERITDALEEDLTDQHYAIDVAHDGEEGLNLADSVTYDLILLDIMLPKIDGIALCRR 60 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 LR STP+ +L+ +I DKV GL +GADDY+ KPF+ EEL ARIRA++RR A Sbjct: 61 LRSQGCSTPILMLTAKDTITDKVVGLDAGADDYLVKPFDLEELSARIRALLRRGVSTAPP 120 Query: 126 LIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 ++ G L LD T EV Q + L+ KEY ++E ++ L HL+ Sbjct: 121 VLEWGKL--RLDPSTCEVFYQDRLLSLSPKEYSLLEFFLRHGRRVFSRAQILEHLWPFER 178 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE + I LR+KL + IETV+G GY L++ Sbjct: 179 LPEEATVKAHIRSLRQKLEAGGAPSDLIETVYGLGYRLKQ 218 >gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G +G++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVSPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222 >gi|225180887|ref|ZP_03734335.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168368|gb|EEG77171.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 237 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 4/228 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++EDD ++ + ++L++E+F V V G+ G+E+ ++ IILDL L + G+E+ Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 RALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR A STP+ +L+ + DKV GLQ GADDY++KPF E +AR+ A++RR+ Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + Q + L++ + ++ + LT KE++++ +L+ TL +E L ++ Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ID I +LR+K+S G +++TVWG GY L D Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVKEND 236 >gi|186472789|ref|YP_001860131.1| two component heavy metal response transcriptional regulator [Burkholderia phymatum STM815] gi|184195121|gb|ACC73085.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 225 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 131/221 (59%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A ++ L+ ++V V + G G+ L + ++D IILD+ L + G+ Sbjct: 1 MRILVIEDEPKTAAYLKKGLEESGYSVEVANDGSHGLILAQEEDYDVIILDVMLPWMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR + +TPV L+ + D+VRGL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 TVVKTLRATR-ATPVLFLTARDDVNDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI GDL ++++ + V+ RI LT +E+ +++LL+ R L++ ++++D Sbjct: 120 PRESELIRIGDLEMDINRRRVKRGTMRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ + K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRSKVDDNFPVK-LIHTVRGVGYVL 219 >gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 228 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 132/222 (59%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+++ + ++ ML+ E F V+ G +G+EL + D ++LDL L + G + Sbjct: 4 QLLVIEDEESFSETLAYMLRREGFVVHTAGSGTEGLELFERQGADLVLLDLMLPGLSGTD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + P+ +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR G Sbjct: 64 VCRRLR-ERSNVPIIMLTARDSEVDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRDG 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++ G + +++D V V+G +HL +E++++E+L LT++ ++ Sbjct: 123 GGDEQRTTVLEAGPVRIDIDRHVVLVRGAPVHLPLREFELLEMLVRHAGRVLTRQQLIDR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ G + K +DV + +LR ++ + ++ TV G GY Sbjct: 183 IWGGDYVGDTKTLDVHVKRLRSRIEDDPSEPRHLVTVRGVGY 224 >gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 231 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + I + L+ + F V G + + + + ++LD+ L D+ GFE Sbjct: 7 RVLVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQVRQFRPHLLLLDVMLPDMEGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L + P+ L+ + +D+VRGL G DDY++KPF+ EELVARIR I+RR+ G Sbjct: 67 VARRLGAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRRT-G 125 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A+ S +V DL ++ D + V G + LT EY+++ L L LT+ L H+ Sbjct: 126 MAEPESSRLVFDDLELDEDTREVTRAGAYVELTATEYRLLRYLMLNPRRVLTRAQLLEHV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++++ ++ +RKKL A G I+TV G GY LR Sbjct: 186 WSYDFGGDARVLETYVSYVRKKLD--AHGPPLIQTVRGVGYALR 227 >gi|225575437|ref|ZP_03784047.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM 10507] gi|225037382|gb|EEG47628.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM 10507] Length = 226 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 134/226 (59%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+K L ++ L+++ ++V GE+ ++ E+DA++LD+ + I G Sbjct: 1 MRILIAEDEKDLNVLLKKRLENQKYSVDACCDGEEALDYLAVTEYDAVVLDIMMPKINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R STPV +L+ SIED+V GL GADDY+ KPF EEL+ARIR ++R+S Sbjct: 61 QVLQKIRKEGTSTPVLLLTAKDSIEDRVTGLDLGADDYLVKPFAFEELLARIRVMLRKSA 120 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ +L+V+L+ V I L+ KE+ ++ + + K L+++ H+ Sbjct: 121 AVETNTNVVKIANLTVDLNTHRVFRDETEIELSNKEFSILRYMCMNKGVVLSRDKIEEHI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ ++DV+I LR+K+ ++ K I T+ G GYVLRE+ Sbjct: 181 WNYDYAGASNVVDVYIRYLRRKIDDSYEPK-LIHTIRGAGYVLRES 225 >gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] Length = 235 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 132/233 (56%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G++ +E+ FD I+LD+ L + G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQSFDFILLDVMLPHMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 + + LR K++ P+ IL+ D++ GL+ GADDY+SKPF+ E++ARI+AI RR S+ Sbjct: 63 ITKRLRQEKVNIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAIARRMSQ 122 Query: 121 GHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q L+ G + +L V+V+G +I LT KE++++ RK+ + ++ Sbjct: 123 NEVQPIDEEKEELVKIGSIEADLSNYQVKVKGEQIFLTPKEFELLVYFMKRKDRVIDRDT 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ ++ + + +I+DV I LR+K+ + Y++TV G GY +E + Sbjct: 183 LLDRIWHFDFDGQSRIVDVHISHLREKIEDDPKHPQYLQTVRGFGYTFKEPHR 235 >gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 246 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E ++ V G D +E Y D ++LD+ + + G Sbjct: 14 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAASYRPDLLVLDIQMPRMDGLT 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 R +R A +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RR Sbjct: 74 AARRIRSAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + ++ GDLS+NL + V G + LT E+ ++E+ LT+E Sbjct: 134 AAAVAASAESDDVLAFGDLSMNLATREVVRGGRPVELTRTEFTLLEMFMAHPRQVLTREQ 193 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ + Sbjct: 194 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 246 >gi|187924179|ref|YP_001895821.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187715373|gb|ACD16597.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 219 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + IE L+ F V + D + G+ L + ++LDLGL + G Sbjct: 1 MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLAL-DTTAYALVLLDLGLPRVSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+L+ LR + PV +L+ ++ D+V GL++GADDY+ KPF+ EL+AR RA++RR+ Sbjct: 60 MELLKRLRDSGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + I DL+VN A+TVEV R+ LT +E+ ++ L + ++ LY Sbjct: 120 QGRSVEQIRYQDLTVNPAAQTVEVGTTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E E I+V + LRKKL G I+TV GYV+ Sbjct: 180 GWQEEIESNAIEVHVSNLRKKL-----GAKLIKTVRNIGYVV 216 >gi|294339218|emb|CAZ87572.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As] Length = 258 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 126/222 (56%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + S+ L+ E + V +V D G + ++D ++LDLGL + G Sbjct: 1 MRLLLVEDDVMIGESVLDALRGEGYAVDWVRD-GAVADSALRTEQYDLVLLDLGLPKMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ALR + +TPV I + ++ ++ GL +GADDY+ KP++ +EL ARIRA++RR+ Sbjct: 60 IAVLKALRTRRETTPVLIATARDAVSARIAGLDAGADDYVLKPYDLDELSARIRALLRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+ + G +S+N + G + L+ +E+ ++E L R L++ LY Sbjct: 120 AGRAEPVFSYGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRAQLEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +DE ++V++ LRKKL G + I + G GY++ Sbjct: 180 SWKDEISSNAVEVYVHSLRKKL-----GPDLIRNIRGMGYMI 216 >gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +++ IE LK ++V GE E+ K + D I+LDL L + G + Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR + P+ +L+ + + DK+ GL +GADDY++KPF+ +EL++RI+AI RR + Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 121 --GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A+S G L+V + + V + G I LT KE++++ L + L+++ L+ Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + +I+DV I LR K+ A YI TV GY L Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >gi|83649045|ref|YP_437480.1| response regulator [Hahella chejuensis KCTC 2396] gi|83637088|gb|ABC33055.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 121/219 (55%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ L + L + V + GE L K +D ++DLGL G Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ R P+ IL+ +DKV GL++GADDY+ KPF+ EL+AR+ A++RRS Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I G ++++ AK V++ G + LT EY +E L R ++K HLY Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +I+VFI +LRKKL + G I T+ G+GY Sbjct: 181 QDFDRDSNVIEVFIGRLRKKL-DPDGVNKPITTLRGQGY 218 >gi|297163405|gb|ADI13117.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 131/222 (59%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LAH++ L +E ++V + G G+ + + E+ I+LDL L + G+ Sbjct: 1 MRILVVEDEVDLAHTLHTGLTAEGYSVDLAHDGRQGLWMARTGEYVLIVLDLMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR +TP+ +L+ D+ L +GADDY++KPF+ LVAR+RA+VRR+ Sbjct: 61 KVCSQLRRENNATPILVLTAKDGEWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ GDLS+++ + G R+ LT +E+ ++ELL+ R ++K L H + Sbjct: 121 TVAPPVLAVGDLSLDVAGRVCRRAGTRVELTPREFAVLELLARRAGQAVSKTDLLYHAWP 180 Query: 181 GRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + +++ + LRKK+ +AA + ++TV G GY L Sbjct: 181 --DEAWDPNLVEARVSALRKKV-DAAFHRQSLQTVRGTGYRL 219 >gi|209520018|ref|ZP_03268796.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209499557|gb|EDZ99634.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 219 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD+ + +E L+ F V + D + G+ L ++ ++LDLGL + G Sbjct: 1 MRLLLVEDDELIGCGVEAGLRQAGFTVDWARDGHKAGLAL-DTTQYALVVLDLGLPRVSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+L+ +R A PV +L+ ++ D+V GL++GADDY+ KPF+ ELVAR A++RR+ Sbjct: 60 LELLKRVRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELVARCHALLRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + LI +L+VN A+TV+V R+ LT +E+ ++ L ++ LY Sbjct: 120 QGRSIDLIRYQNLTVNPAAQTVQVDEARVPLTSREWAILLQLLTNLGIPQSRSRLEESLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E E I+V + LRKKL G N I+TV GYV+ Sbjct: 180 GWQEEIESNAIEVHVSNLRKKL-----GANLIKTVRNIGYVM 216 >gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 222 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LA ++ LK+E F V G DG+ FD +ILD+ L G+ Sbjct: 1 MKVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDIVILDIMLPGRSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + TPV +L+ D+ GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G LS++ TV+ I LT +EY ++E L K+ +TK L +++D Sbjct: 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++V++ LR+K+ + G N IET+ G GY L Sbjct: 181 AHHHGPDNVVEVYVGYLRRKI-DVPFGTNTIETIRGVGYRL 220 >gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 233 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 132/226 (58%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+ ++A ++ L+ F V G+ G+EL + + I+LDL L ++ G E Sbjct: 4 KVIVVDDEVSIATLLKFNLEQAGFEVETAHDGKTGLELAEKKDAVLIVLDLMLPEMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K++TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RRS Sbjct: 64 VCKRLRQQKVNTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRSAP 123 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I GD+ + V QG R+ LT KE++++ L+ K LT++ L+ Sbjct: 124 QESAVEEDIIQIGDVKIVASNYEVFKQGERLELTPKEFELLAYLAKNKGRVLTRDQLLSA 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +I+DV I LR+K+ YI+T+ G GY + E Sbjct: 184 IWNYDFVGDTRIVDVHISHLREKIEPVTKKPTYIKTIRGLGYKMEE 229 >gi|145221065|ref|YP_001131743.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315441964|ref|YP_004074843.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145213551|gb|ABP42955.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315260267|gb|ADT97008.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 248 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + S+ L+ F+V V G++ + L DA++LD+ + ++ G V Sbjct: 25 VLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAV 84 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + ALR P+C+LS ++ D++ GL++GADDY++KPF+ ELVAR+ A++RR+ Sbjct: 85 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 144 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+++ + V V G R+ LT +E+ ++ L+ L+++ L ++ Sbjct: 145 DPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVWG 204 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + DVF+ LR+KL G I TV G GYVLRE A Sbjct: 205 YDFDVDTNVADVFVSYLRRKLER-DGLPRVIHTVRGIGYVLREEA 248 >gi|325113029|ref|YP_004276975.1| two-component response regulator [Acidiphilium multivorum AIU301] gi|325052496|dbj|BAJ82833.1| two-component response regulator [Acidiphilium multivorum AIU301] Length = 225 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L+ F V GE G++ + +DAIILD+ L GF Sbjct: 1 MRVLIVEDEAKTAAYLRKGLEENGFTTDVATDGETGLQFARHGGYDAIILDIMLPRRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R T V +L+ + D+V GL++GADDY+ KPF EL+AR+R I+RR Sbjct: 61 EILAEIRRRDSHTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI DL ++L G + LT KE++++ LL+ R +++ + ++D Sbjct: 121 ARQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++DV + +LR KL + + I TV G GYVL + Sbjct: 181 INFDSGTNVVDVHMYRLRAKLDDPF-SRRLIHTVRGVGYVLEDRG 224 >gi|297154563|gb|ADI04275.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 131/222 (59%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LAH++ L +E ++V + G G+ + + E+ I+LDL L + G+ Sbjct: 1 MRILVVEDEVDLAHTLHTGLTAEGYSVDLAHDGRQGLWMARTGEYVLIVLDLMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR +TP+ +L+ D+ L +GADDY++KPF+ LVAR+RA+VRR+ Sbjct: 61 KVCAQLRRENNATPILVLTAKDGEWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ GDLS+++ + G R+ LT +E+ ++ELL+ R ++K L H + Sbjct: 121 TVAPPVLAVGDLSLDVAGRVCRRAGARVELTPREFAVLELLARRAGQAVSKTDLLYHAWP 180 Query: 181 GRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + +++ + LRKK+ +AA + ++TV G GY L Sbjct: 181 --DEAWDPNLVEARVSALRKKV-DAAFHRQSLQTVRGTGYRL 219 >gi|325680782|ref|ZP_08160320.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] gi|324107562|gb|EGC01840.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] Length = 220 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 125/217 (57%), Gaps = 3/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + L++E + V + GE +EL + Y ++LD+ L D+ GF V Sbjct: 4 ILIVEDDKELSSLLTDFLRAEGYTVSAVENGERAVELFERYGTRLVVLDINLPDMNGFAV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR TP+ I+S + EDK+ GL GADDYI KP++ + L+A+I+ I +R + Sbjct: 64 CSKLR-ENADTPILIVSARTDKEDKLNGLDLGADDYIEKPYDIDILLAKIKGIFKRR--Y 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 +S++ +++NL KT E+ G+ + L+ KE+ ++ LL + L KE + ++ Sbjct: 121 QRSMLSASGVTLNLANKTAEIDGNPVQLSAKEFDLLALLIENQGKALKKEYLFSTVWGSD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E++ + V I +LR+KL + + TVWG GY Sbjct: 181 SDSELQTLHVHINRLRQKLGDDPKNAKRLLTVWGVGY 217 >gi|170729101|ref|YP_001763127.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814448|gb|ACA89032.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 225 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 130/228 (57%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ILL+EDD A +IE ++K + N+ G G+ L ++D I+LD L + Sbjct: 1 MKILLVEDD---ATTIEYVVKGFTEQGHNIETASDGHQGLLLATSMKYDLILLDRMLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R +++ Sbjct: 58 DGLKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117 Query: 118 RSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R A++ + G+L + L + V + G+ + L KE+Q+++ L N +++ + Sbjct: 118 RGLSQPAETGLTVGNLVMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGFGE-LIETVRGAGYRLRQG 224 >gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ + D +ILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLALSLARGLTAEGYAVDVVHDGLEGLHMASEGVHDLVILDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR++A++ RR Sbjct: 61 RVCAALRAAGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R ++ GDL V+ A+ V V LT KE+ ++E L++R ++K L H++ Sbjct: 121 RAGGSPVLAVGDLRVDTAARRVFVGETETTLTAKEFAVLEQLAVRAGDVVSKAQILEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + II+V+I LR+KL G I+TV G GY L Sbjct: 181 DFAYDGDPNIIEVYISSLRRKL-----GAPRIQTVRGAGYRL 217 >gi|169794902|ref|YP_001712695.1| transcriptional regulator [Acinetobacter baumannii AYE] gi|184159323|ref|YP_001847662.1| response regulator [Acinetobacter baumannii ACICU] gi|213157694|ref|YP_002320492.1| two-component system DNA-binding response regulator [Acinetobacter baumannii AB0057] gi|215482449|ref|YP_002324635.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB307-0294] gi|239502332|ref|ZP_04661642.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB900] gi|260557267|ref|ZP_05829483.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|301346205|ref|ZP_07226946.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB056] gi|301512563|ref|ZP_07237800.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB058] gi|301597175|ref|ZP_07242183.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB059] gi|332854188|ref|ZP_08435208.1| transcriptional regulatory protein QseB [Acinetobacter baumannii 6013150] gi|332866379|ref|ZP_08436976.1| transcriptional regulatory protein QseB [Acinetobacter baumannii 6013113] gi|332872585|ref|ZP_08440554.1| transcriptional regulatory protein QseB [Acinetobacter baumannii 6014059] gi|169147829|emb|CAM85692.1| transcriptional regulator [Acinetobacter baumannii AYE] gi|183210917|gb|ACC58315.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|193078207|gb|ABO13164.2| transcriptional regulator [Acinetobacter baumannii ATCC 17978] gi|213056854|gb|ACJ41756.1| two-component system DNA-binding response regulator [Acinetobacter baumannii AB0057] gi|213988084|gb|ACJ58383.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB307-0294] gi|260409373|gb|EEX02675.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|300915683|gb|ADK46841.1| PmrA [Acinetobacter baumannii] gi|300915687|gb|ADK46844.1| PmrA [Acinetobacter baumannii] gi|300915690|gb|ADK46846.1| PmrA [Acinetobacter baumannii] gi|300915693|gb|ADK46848.1| PmrA [Acinetobacter baumannii] gi|300915696|gb|ADK46850.1| PmrA [Acinetobacter baumannii] gi|300915699|gb|ADK46852.1| PmrA [Acinetobacter baumannii] gi|300915703|gb|ADK46855.1| PmrA [Acinetobacter baumannii] gi|300915707|gb|ADK46858.1| PmrA [Acinetobacter baumannii] gi|300915711|gb|ADK46861.1| PmrA [Acinetobacter baumannii] gi|300915715|gb|ADK46864.1| PmrA [Acinetobacter baumannii] gi|322509234|gb|ADX04688.1| Transcriptional regulator [Acinetobacter baumannii 1656-2] gi|323519263|gb|ADX93644.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332728113|gb|EGJ59501.1| transcriptional regulatory protein QseB [Acinetobacter baumannii 6013150] gi|332734663|gb|EGJ65768.1| transcriptional regulatory protein QseB [Acinetobacter baumannii 6013113] gi|332739271|gb|EGJ70129.1| transcriptional regulatory protein QseB [Acinetobacter baumannii 6014059] Length = 224 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 11/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A S +L+ F V + G DG+ +FD I+LDLGL + G + Sbjct: 3 KILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKTKFDLILLDLGLPMMDGMQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + +TPV I+S ++++V GL GADDY+ KP+ +EL+ARI A++RRS Sbjct: 63 VLKQIR-QRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGV 121 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 AQ L+ +GDL +N++ +G RI L+ +E+ ++ L N +K + Sbjct: 122 EAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMTHPNKIFSKANLED 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LYD + I+V++ LR KL GK++I T+ G GY L ++ Sbjct: 182 KLYDFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRLGQS 224 >gi|298291053|ref|YP_003692992.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927564|gb|ADH88373.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 229 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++EDD + + SE++ V + GE+ + ++AIILD+ L G Sbjct: 1 MTILIVEDDPDIGSLLRRGFSSESYQVELVGDGEEALRAANGKAWEAIILDVMLPGRSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EV +ALR + P+ +LS SS+ ++ GL +GADDYI KPF EEL+AR++ +RRS Sbjct: 61 EVCKALRAGGQTAPIIMLSARSSVNERTEGLMAGADDYIIKPFAFEELLARLKVQALRRS 120 Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ ++T G LS++LD + ++ G R+ LT +E +++ LL + L + L Sbjct: 121 NADSEPRVLTAGPLSLDLDTRQAQLAGTRVRLTEREVELLALLMRHPSEPLARADIFAAL 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVL 221 + G + ++DV++ LR KL+ A G + I TV GRG++ Sbjct: 181 WAGHGGASLNVVDVYVGYLRHKLAEALPDGGHMIVTVRGRGFMF 224 >gi|325520568|gb|EGC99646.1| two component transcriptional regulator, winged helix family protein [Burkholderia sp. TJI49] Length = 219 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +E+ L ++V G F ++LDLGL G Sbjct: 1 MRLLLVEDDDLIGSGLEISLSQAGYHVDWLRDGHAAAAALATTRFALVVLDLGLPGKSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LRALR A + PV +L+ ++ D+V GL GADDY++KPF+ E++AR RA+VRRS+ Sbjct: 61 QLLRALREAGDTVPVLVLTARGNVADRVSGLDDGADDYLAKPFDLSEVLARCRALVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A IV D++++L TV RI LT +E+ ++ L ++ + LY Sbjct: 121 GRAGDEIVWRDITIDLGTHTVTRDAARIALTAREWAILVQLVSHPGIPQSRARLEDGLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E I+V + LRKKL G + I TV G GYV+ Sbjct: 181 WQEGLESNAIEVHVSNLRKKL-----GADLIRTVRGIGYVV 216 >gi|302335659|ref|YP_003800866.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301319499|gb|ADK67986.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 228 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED++ LA +I +L ++N G+ G+ C+ +DA+I+D L + G Sbjct: 1 MNILVVEDERNLADAIVRILSDADYNAEAVYDGKSGLTACESGLYDAVIMDGMLPGMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR S PV +L+ +S DKV GL +GADDY++KPF EL+AR+RA+ RR Sbjct: 61 EVVRRLRRENNSIPVLMLTARTSTSDKVEGLDAGADDYMTKPFESPELLARLRALTRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL+++L + GH +HL+GKE++++ +L ++K+ L ++ Sbjct: 121 DVVIDEVSFADLTLDLATHDLSCDGHTVHLSGKEFEVLRMLMSSTARVISKQDLLTRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E ++ +I LRKK+S+ I T+ GY L + A D+ Sbjct: 181 TDGEASENSVEAYISFLRKKISHVHSTVQ-ITTLRMLGYRLEQFANDD 227 >gi|296135166|ref|YP_003642408.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295795288|gb|ADG30078.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 258 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 126/222 (56%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + S+ L+ E + V +V D G + ++D ++LDLGL + G Sbjct: 1 MRLLLVEDDVMIGESVLDALRGEGYAVDWVRD-GAVADSALRTEQYDLVLLDLGLPKMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ALR + +TPV I + ++ ++ GL +GADDY+ KP++ +EL ARIRA++RR+ Sbjct: 60 IAVLKALRTRRETTPVLIATARDAVSARIAGLDAGADDYVLKPYDLDELSARIRALLRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+ + G +S+N + G + L+ +E+ ++E L R L++ LY Sbjct: 120 AGRAEPVFSYGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRAQLEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +DE ++V++ LRKKL G + I + G GY++ Sbjct: 180 SWKDEISSNAVEVYVHSLRKKL-----GPDLIRNIRGMGYMI 216 >gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E ++ V G D +E Y+ D ++LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYQPDLVVLDIQMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 72 AARRIRGAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A ++ V GDL ++L + V G + L E+ ++E+ LT+E Sbjct: 132 AATAVGVPEDDALTFGDLRMDLATREVTRGGRSVELIRTEFTLLEMFLAHPRQVLTREQI 191 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR + Sbjct: 192 LKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRSGGAE 243 >gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++DD+ + + L E + V G +G+ L + D +ILD+ + + G+EV Sbjct: 5 IMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVMMPQVDGWEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R +R + P+ +L+ I D+V+GL +GADDY+ KPF EEL+AR+RA++RR Sbjct: 65 CRRVREGGSTVPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRRKSDK 124 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + IV DL+++LD++ G RI LT KEY ++ L LT++ + + Sbjct: 125 IDESSSNKIVFDDLALDLDSREAIRSGRRIELTAKEYDLLLLFMQNPRRVLTRDAIMEKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +++V+I LR+KL G K I+TV G GYVLR Sbjct: 185 WGYDFSGESNVLEVYIAMLRQKLEE-GGAKRIIQTVRGTGYVLR 227 >gi|114797880|ref|YP_760030.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114738054|gb|ABI76179.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 235 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+IEDD +A IE +L V G G+ + + E+DA+I+D L + G Sbjct: 10 LKVLVIEDDTEMASFIEKVLLDAGHKVERASDGASGLAMARASEYDALIVDRMLPEKDGL 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R A +TP LS + +++KV+GL++GA+DY+ KPF EL AR+ A+ RR Sbjct: 70 TLLQEFRAAGGTTPALFLSALGDVQNKVQGLRAGAEDYLGKPFAPAELAARVEALGRRQT 129 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V GDL +NL + V G +I L +E++++E L +T+ M L + Sbjct: 130 NAEPPVTVLKAGDLEMNLLTRKVTRAGKKIDLQPREFRLLEYLMRHAGQVVTRTMLLEKV 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D +P+ +IDV I +LR K+ + ++TV G GY L+ Sbjct: 190 WDYNFDPQTNVIDVHISRLRAKIDKEF-AEPLLQTVRGAGYRLQSQ 234 >gi|332523841|ref|ZP_08400093.1| putative response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] gi|332315105|gb|EGJ28090.1| putative response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] Length = 224 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 132/224 (58%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++SI L + V D G++G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GDEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I TPV I++ ++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKELREKDIKTPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ I G+L V+L+ V+V + L GKEY ++ L +N L K + ++ Sbjct: 121 KFNENSITFGNLRVDLNRNAVKVNDRAVELLGKEYDLLIYLLQNQNVILPKSQIFDRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++V++ K+RKKL N N ++T+ GY+L+ N Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKNTDFAAN-LQTLRSVGYILKAN 223 >gi|26988882|ref|NP_744307.1| two component heavy metal response transcriptional regulator [Pseudomonas putida KT2440] gi|24983690|gb|AAN67771.1|AE016408_9 DNA-binding heavy metal response regulator [Pseudomonas putida KT2440] Length = 226 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED + L F + GE G L + D +ILD+ L G+ Sbjct: 1 MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A+R A + TPV L+ ++ED+V GL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q I++ DL ++L + E G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 SPSQDTILSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + + +I+V I +LR K+ + K I TV G GYVL E + Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDPHPNK-LIHTVRGMGYVLEERTE 226 >gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 237 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 132/230 (57%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ AL +++ L+ E + V + G +E+ + ++ ++LD+ + + G Sbjct: 8 RVLVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPYELVLLDVMMPRLDGLT 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR A PV +L+ ++ D+V GL +GADDY+ KPF +EL+AR+RA++RRS Sbjct: 68 ACRRLRAAGNHVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRRSAL 127 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + +++ GDL ++ ++ V G + LT EY ++ELL + LT+E Sbjct: 128 TAPAAADDDGGVLLHGDLRMDTASREVTRAGEPLELTRTEYLLLELLMVHPRQVLTREQI 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++ EP +DV++ LR+K + AAG I TV G GYVLR + Sbjct: 188 LSEVWGFDFEPSSNSLDVYVMYLRRK-TEAAGRSRLIHTVRGVGYVLRSS 236 >gi|325262633|ref|ZP_08129370.1| DNA-binding response regulator VicR [Clostridium sp. D5] gi|324032465|gb|EGB93743.1| DNA-binding response regulator VicR [Clostridium sp. D5] Length = 249 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ + V GE+ +E + E+D ++LD+ L + GF+ Sbjct: 25 KILVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEYARNCEYDLVLLDVMLPKLDGFQ 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R PV +L+ S DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 85 VCQQIREFS-DMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 143 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++IV G + ++ +++ V + I+LT KE+ ++ELL++ N ++E LN Sbjct: 144 REEPAGSTVIVKGAMRIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 203 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G D P + + +DV I +LR+K+ Y+ T WG GY + Sbjct: 204 IW-GYDYPGDARTVDVHIRRLREKIEKNPSEPKYVHTKWGVGYYFQ 248 >gi|319652578|ref|ZP_08006692.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317395652|gb|EFV76376.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD+ + I+ L+ ENF V GE+ + L K EFD I+LDL L G + Sbjct: 4 RILLVEDDREINKLIKDHLEQENFKVLTAFDGEEALSLFKKEEFDLILLDLMLPKFSGMD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R K PV I+S S DK GL GADDYISKP + EL AR+ A +RR+ Sbjct: 64 ILKKVR-EKSLLPVLIISAKGSDLDKALGLGFGADDYISKPISMIELTARVHAAIRRATQ 122 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A ++I +LS++L +V+V+ LT KE+ +++L ++ TKE Sbjct: 123 YIPATNHSAPAIIQFKELSLDLSTFSVQVKDKIAQLTSKEFHILKLFMTNQSRVFTKEQI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +I+V I +LR+K+ YI T+WG GY L E Sbjct: 183 YQFIWQDDYYGNENVINVHIRRLREKIEKDPSNPQYIRTIWGIGYKLGE 231 >gi|228995903|ref|ZP_04155561.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003520|ref|ZP_04161338.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757758|gb|EEM06985.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228763875|gb|EEM12764.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 223 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L SI +L E F V GEDG+ L +D I+LD+ L I GF Sbjct: 1 MRLLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVMLPVIDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDY+ KPF EL ARIRA++RRS Sbjct: 60 EVIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRS- 118 Query: 121 GHAQSLIVTGDLSVNL--DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G+ + + L K ++V G I LT K+Y+++E L L +E + + Sbjct: 119 GNLTTKQTINYRGIELFGKDKDIQVDGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 179 WGFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYMLKEQ 223 >gi|117923628|ref|YP_864245.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117607384|gb|ABK42839.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 221 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED +LA ++ L + F V E+G + + +DA+ILDLGL D G Sbjct: 1 MRILVVEDHASLAAGLKKDLGAAGFVVDWAANAEEGAFMGREEPYDAVILDLGLPDDSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A + PV IL+ + +V GLQ+G DDY+ KPF+ EEL+AR+ A++RR Sbjct: 61 NVLRGWRAAGVDVPVIILTAWDAWHQRVDGLQAGGDDYLGKPFHMEELIARLNALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + + ++ + + + +H LT E++++ L L + L+K H+Y Sbjct: 121 GVVRPALTLEGIHLDETDQQLSLANGELHTLTHTEFRLLRYLMLHPDQLLSKSQLTEHIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +I+V+I +LR+ L G+ IET G+GY LR Sbjct: 181 AYDEDRDSNVIEVYIKRLRRLL-----GQQRIETRRGQGYRLR 218 >gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] Length = 240 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F+V + G + D I+LD+ L D+ GF Sbjct: 15 KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGFT 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A I+TPV L+ + DK++GL G DDY++KPF EE+VARIRAI+RR+ G Sbjct: 75 VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 134 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + GDL ++ DA V G I L+ E++++ L + ++K L+H++ Sbjct: 135 SEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 194 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + EV I++ +I LR+KL+ I T G GY+LR Sbjct: 195 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 237 >gi|288960040|ref|YP_003450380.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288912348|dbj|BAI73836.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 221 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD ALA + LK + V GE+ + L + + ++LDLGL D+ GF Sbjct: 1 MRILIVEDDAALARGVTGALKLAGYAVDHVASGEEAVRLERAEPYGLVVLDLGLPDLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R + PV IL+ ++ D+V+GL GADDY+ KPF+ E AR+RA++RR + Sbjct: 61 EVLTLIRRRGSTVPVMILTAREAVADRVKGLDLGADDYLLKPFDPAEFEARVRALMRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G L + TV + G + L +E ++E L R + K+ ++ Sbjct: 121 GTPIPELACGPLRYDRSTATVTLNGRVLDLRKRELAVLEGLITRAGKVVPKDRLAGEVF- 179 Query: 181 GRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G DEP I++++ +LRKKL I T+ G GY++ ENA Sbjct: 180 GFDEPVAPNAIELYVARLRKKLEPDG---PQIRTIRGLGYLM-ENA 221 >gi|269137752|ref|YP_003294452.1| DNA-binding response regulator in two-component regulatory system with BasS [Edwardsiella tarda EIB202] gi|267983412|gb|ACY83241.1| DNA-binding response regulator in two-component regulatory system with BasS [Edwardsiella tarda EIB202] gi|304557809|gb|ADM40473.1| Transcriptional regulatory protein basR/pmrA [Edwardsiella tarda FL6-60] Length = 220 Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD + + + EN+ L + + IILDLGL + G Sbjct: 1 MKILIVEDDTLIQQGLAQAMARENYACDCAGNAASASALLQSGHYSLIILDLGLPGMDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR R I PV IL+ ++ D+V GL +GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 SALRQWRREGIDAPVLILTARDTVSDRVGGLDAGADDYLVKPFALAELLARVRALIRRMQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + D+ ++L ++ V G + +T KE+ ++ L +R T+++E+ LY Sbjct: 121 GLCNNALQVDDIHLDLSSQQVSCGGLPLEITPKEFAILTRLMMRAGQTISREVLQQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +DE ++V I LR+KL GKN I+T+ G GY L Sbjct: 181 WQDELSSNSLEVHIHNLRRKL-----GKNRIKTLRGVGYRL 216 >gi|298290576|ref|YP_003692515.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927087|gb|ADH87896.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 224 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ LA ++ L++ F V D +D +LDL L D G Sbjct: 1 MRLLLVEDERELAGLLDAGLRAAGFAVDRARTVADAEAALNTEGYDIAVLDLRLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R ++ PV IL+ ++ D+VRGL+ G DDY+ KPF+ +ELVAR+RA++RR Sbjct: 61 DLLRRQRARGLAIPVLILTARDNLADRVRGLEQGGDDYVLKPFHMDELVARLRALLRRPN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I+ G++++N ++V V + L+ +E ++EL R LT+E LY Sbjct: 121 QALGANIIVGNVALNTADRSVTVSHAPLPLSRRELGLLELFMRRSGRVLTRECIERALYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE E ++V + +LR+KL+ AG I T+ G GY+L E Sbjct: 181 FDDELESNAVEVLLHRLRRKLTG-AGASPEIHTLRGIGYLLEE 222 >gi|322421546|ref|YP_004200769.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M18] gi|320127933|gb|ADW15493.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 224 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED++ A+ ++ L F+V + + GEDG+ L +D IILD+ L G+ Sbjct: 1 MRILIIEDEQKAANYLKKGLSENGFSVDIANNGEDGLHLAMTEAYDLIILDVMLPIKGGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A PV LS ++ D+V GL+ GADDY+ KP+ EL+ARIR I+RR Sbjct: 61 AIIKELRDAGNDVPVIFLSARDAVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRHP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ DL ++L GH + LT KE+Q++ L+ R+ LT+ ++ Sbjct: 121 LQQSELLKMADLELDLIRHKARRGGHSLDLTVKEFQLLALMLRRRGEVLTRTTISEQVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++DV I +LRKK+ + K I T+ G GYV+ E A Sbjct: 181 INFDSDTNVVDVAIRRLRKKVDDPFPLK-LIHTIRGVGYVIDEAA 224 >gi|170744192|ref|YP_001772847.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168198466|gb|ACA20413.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 221 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD ALA + L+ GED L + I+LD+GL + GF Sbjct: 1 MRVLVVEDDAALARGLVASLRLAGLAADHEADGEDAARLALSEPYSLIVLDIGLPGLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A + PV IL+ ++ D+VRGL GADDY+ KPF E AR+RA +RR + Sbjct: 61 EVLRRIRAAGSTVPVLILTARDAVADRVRGLDLGADDYLLKPFAPAEFEARVRAQIRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ G L+++ V + G + L +E ++ +L + + KE N ++ Sbjct: 121 GQPNPVLRCGTLALDRSTGAVTLDGEPLALRRRERAVLTVLMAKAGQVVPKERLNNEVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE ++++I +LRKKL I T+ G GY+L Sbjct: 181 FDDEVAPNALELYIARLRKKLQPKG---PEIRTIRGLGYLL 218 >gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098] Length = 226 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G ++ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRHLVTVRGLGY 222 >gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 252 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A + L L+ E + V G +G+ + ++DA++LDL L I G E Sbjct: 16 RVLIVEDDAHIADLLRLHLRDEGYEVEHAADGNEGMRRLEEGDWDALVLDLMLPGIDGLE 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR+RA++RRS Sbjct: 76 ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSSA 135 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R A SL V G +S++ A+TV+V R+ LT +E+ ++ + + ++ Sbjct: 136 IERNARIDAGSLAVHG-VSIDPIARTVDVDDRRLDLTPREFDLLHFFARHPDKVFSRMDL 194 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LNH++ + E ++ I +LR K+ I TVWGRGY Sbjct: 195 LNHVWGYQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGRGY 239 >gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L+ + V V G DG L + FD +ILD+ L + G+ Sbjct: 1 MRILVVEDEAKTADYLKRGLEESGYRVEVARNGVDGKHLIEEETFDLVILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R TPV L+ ++ED+VRGL+ GADDY+ KPF+ EL+AR+R ++RR Sbjct: 61 QLVQVVRQRSAHTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++L + V QG RI+LT KE+ ++ LL R+ L++ + ++ Sbjct: 121 PREVEHFHVADLELDLLRRRVTRQGERINLTNKEFALLHLLLSRQGEVLSRAQIASQVWQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV I +LR K+ + K I TV G GYVL Sbjct: 181 MNFDSDTNVVDVAIRRLRAKVDDPYPLK-LIHTVRGMGYVL 220 >gi|319424670|gb|ADV52744.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 239 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 129/227 (56%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ILL+EDD A +I+ ++K + N+ + G G+ L ++D +ILD L + Sbjct: 15 MKILLVEDD---ATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQL 71 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS ++ ++++V+GL++G DDY++KPF EL+ R +++ Sbjct: 72 DGLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 131 Query: 118 RSRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + S +V G L + L + V + G + L KE+Q+++ L N +++ + Sbjct: 132 RGQSTPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFE 191 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 192 AVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQ 237 >gi|313499723|gb|ADR61089.1| Two component heavy metal response transcriptional regulator [Pseudomonas putida BIRD-1] Length = 226 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED + L F + GE G L + D +ILD+ L G+ Sbjct: 1 MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A+R A + TPV L+ ++ED+V GL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q I++ DL ++L + E G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 SPSQDTILSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + +I+V I +LR K+ + K I TV G GYVL E Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDPHPNK-LIHTVRGMGYVLEE 223 >gi|187919464|ref|YP_001888495.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717902|gb|ACD19125.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 227 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD + S+ LK +++V +V D G G + E+ ++LDLGL + G Sbjct: 1 MRILLVEDDLQIGQSLLRALKDADYSVDWVRD-GVAGRDAMANAEYTVVLLDLGLPGLSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+L++ R A + PV IL+ ++ +V+GL GADDY+ KPF+ EL+ARIRA++RR Sbjct: 60 IELLKSSRAAGNAVPVLILTARDDLDSRVQGLDVGADDYLLKPFDVPELLARIRAVLRRK 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+A S + LS++LD +T+ G L+ +E+ ++ R T L++E + LY Sbjct: 120 AGYASSRLGDESLSLDLDKRTLTCNGATTVLSAREFALMLAFLERPGTILSREQLEDRLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E +DV I +RKK G + I V G G+ + Sbjct: 180 GWGKEVESNAVDVLIHSVRKKF-----GLSVIRNVRGLGWTV 216 >gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] Length = 240 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F+V + G + D I+LD+ L D+ GF Sbjct: 15 KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGFT 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A I+TPV L+ + DK++GL G DDY++KPF EE+VARIRAI+RR+ G Sbjct: 75 VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 134 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + GDL ++ DA V G I L+ E++++ L + ++K L+H++ Sbjct: 135 SEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 194 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + EV I++ +I LR+KL+ I T G GY+LR Sbjct: 195 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 237 >gi|84622740|ref|YP_450112.1| hypothetical protein XOO_1083 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366680|dbj|BAE67838.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 232 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 118/226 (52%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57 MRILL+EDD +L I L+ Y D DG+ L E D +ILDLGL + Sbjct: 1 MRILLVEDDLSLGEGIRTALRRA---AYAVDWVHDGVSALMALQEQTMDLVILDLGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV+R R + TP+ +LS D+ G GADDY+ KPF+ EL+AR RA++R Sbjct: 58 DGIEVIRTARARAVDTPILVLSARERAADRALGPDVGADDYLGKPFDTNELLARTRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G Q + G L ++ +V G + LT +E+ ++ LL ++ + +E H Sbjct: 118 RSAGRTQPALQAGALRLDPAGMSVRWHGRDLDLTRREFALLWLLMEQRGRPIGRERIQQH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LY ++ +DV + +LR+KLS A I T+ G GY L E Sbjct: 178 LYGWDEDVASNAVDVHVHQLRRKLSAAV-----IRTIRGIGYALDE 218 >gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 232 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 137/233 (58%), Gaps = 15/233 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 + L+++D+K + I+ L+ +++ V V G++ +++ K E+D ++LD+ L ++ G E Sbjct: 4 KALVVDDEKLIVKGIKFSLEQDDYEVDVAYDGKEALKMAKEKEYDIVLLDVMLPEMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ + DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQAIREFS-EMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSK 122 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++S +I DL ++LD++ V + I+LT KE+ ++ELL+ + ++E L Sbjct: 123 KSKSVDKNERIIEISDLKLDLDSRRVFEKDKEINLTAKEFDILELLTQNPDKVYSREQLL 182 Query: 176 -----NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N L++ D V+ +DV + +LR+K+ YI T WG GY +E Sbjct: 183 SIVWGNKLHEAGD---VRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYFKE 232 >gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 228 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 131/224 (58%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K +A +++ L+ E +NV + G +G+ +D IILDL L + GF V Sbjct: 5 ILIIEDEKKIARFLQIELEHEGYNVAIEYSGNEGLRRALDENYDLIILDLMLPGMDGFSV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 L+ +R K S PV ILS I+DKV GL GADDY++KPF+ EEL+ARIR +R++ + Sbjct: 65 LKEIR-KKSSIPVIILSAKDEIKDKVMGLDIGADDYLTKPFSIEELMARIRNALRKNIKA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + G + +D T EV G +I LT KE+ +++ L + LT+E L +++ Sbjct: 124 NTKKISYDG---ITMDLSTYEVLRDGQKIELTKKEFDLLKYLIINAEIVLTRENILENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E I+DV+I LR K+ K I+T+ G GY LR+ Sbjct: 181 GYNYIGETNIVDVYIRYLRSKIDEPFSNK-LIQTIRGVGYSLRK 223 >gi|229592122|ref|YP_002874241.1| two-component system transcriptional regulatory protein PhoP [Pseudomonas fluorescens SBW25] gi|229363988|emb|CAY51531.1| two-component system, transcriptional regulatory protein PhoP, regulator of virulence determinants [Pseudomonas fluorescens SBW25] Length = 225 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 123/226 (54%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L H + L V E+ + + D I+DLGL + G Sbjct: 1 MKLLVVEDEALLRHHLLTRLTDSGHVVEAVANAEEALYQTGQFNHDLAIIDLGLPGMGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS Sbjct: 61 DLIRQLRTQAKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARMNALLRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G QS IV G L ++L+ K + + LT EY+++E L + K+ + LY Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 DE + +I+V + +LR+KL GG I+TV G GY+ E + Sbjct: 181 DDDERDPNVIEVLVGRLRRKLE-GPGGFKPIDTVRGLGYLFNERCR 225 >gi|311278058|ref|YP_003940289.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308747253|gb|ADO47005.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 219 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK + + L F + GE+G +DA+ILDL L I G Sbjct: 1 MRILLVEDDKLIGDGLRAGLVKMGFTLDWFTRGEEGKAALLAAPYDAVILDLTLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LRA R PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILRAWRAQGRQEPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G +++N D+ T G + L KE+ ++ELL L +++ LY Sbjct: 121 GQATNALQHGKVTLNPDSLTATFDGAPLPLKPKEFALLELLMRNAGRVLPRKLIEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGE 218 >gi|167579523|ref|ZP_02372397.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] Length = 225 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L IEDD+ A+ I LKS F V G DG+ ++D I LD L + G Sbjct: 3 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L +R + TPV +LS + ++++VRGL++G DDY++KPF+ EE+ AR+ ++RRS+ Sbjct: 63 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMTARLEVLLRRSQA 122 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + G L+++L ++ V G I L EY+++E + T+T+ M + Sbjct: 123 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P +IDV + +LRKK+ + I TV G GY+L Sbjct: 183 WGYHFDPGTNLIDVHMGRLRKKI-DPPDATPMIRTVRGAGYIL 224 >gi|66046356|ref|YP_236197.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|302184957|ref|ZP_07261630.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] gi|63257063|gb|AAY38159.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330954638|gb|EGH54898.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] gi|330972829|gb|EGH72895.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 227 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L S V D G DG+ ++D I LD L ++ G Sbjct: 3 RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 ++ LR ISTP+ ++S +S ++++VRGL++G DDY+ KPF +E+ AR+ ++RRS Sbjct: 63 IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A++++ DL +NL + G + L E++++E L +T+ M ++ Sbjct: 123 VSAAKTVLQVADLELNLITREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ + G I+TV G GYV+ E Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225 >gi|260463371|ref|ZP_05811572.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259030961|gb|EEW32236.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 225 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA + L+ ++ V + GED + IILDL L + G Sbjct: 1 MRLLLVEDNHELADWLGKTLRQAHYVVDIVHDGEDVEHALAAGDHALIILDLALPRMGGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR PV +L+ +S++ +V+GL GADDY++KPF EEL ARIR +RR+ Sbjct: 61 EVLRMLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRVQLRRAN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL + + + + G + LT +E+ ++E L ++ T++K +YD Sbjct: 121 DRTAPMITCGDLVFDTNTRLFSLAGETLALTPREHAVLEQLMVKAGRTVSKAALSAAIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I++++ ++RKKL G + I T+ G GY+LR++ Sbjct: 181 FETDADPSAIEIYVHRVRKKLE---GSRVQIATLRGLGYLLRQD 221 >gi|325689898|gb|EGD31902.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 224 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++VNL + G + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDVTVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNEILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + V +++V++ K+RKKL KN + T+ GY+L++ Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTTFAKN-LHTLRSVGYILKD 222 >gi|229492138|ref|ZP_04385947.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] gi|229320926|gb|EEN86738.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] Length = 234 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + +S+E L+ F+ G + A++LD+ + + G Sbjct: 9 RILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPGLDGVG 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ ALR P+C+LS SS+ D++ GL++GADDY++KPF ELVAR+RA++RR+ Sbjct: 69 VVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTTR 128 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ I G L+V+L + G RI LT +E+ ++ +L+ L++ L + Sbjct: 129 ATPSVDHPITVGPLTVDLRGHRAHIDGRRIELTKREFDLLSVLAEHAGVVLSRAQLLRLV 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DVF+ LRKKL G I TV G G+VLR Sbjct: 189 WGYDFAADTNVVDVFVTYLRKKL-EVDGAPRVIHTVRGVGFVLR 231 >gi|120597082|ref|YP_961656.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|146291504|ref|YP_001181928.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|120557175|gb|ABM23102.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145563194|gb|ABP74129.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 225 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 129/227 (56%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ILL+EDD A +I+ ++K + N+ + G G+ L ++D +ILD L + Sbjct: 1 MKILLVEDD---ATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS ++ ++++V+GL++G DDY++KPF EL+ R +++ Sbjct: 58 DGLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117 Query: 118 RSRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + S +V G L + L + V + G + L KE+Q+++ L N +++ + Sbjct: 118 RGQSTPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQ 223 >gi|309803189|ref|ZP_07697286.1| response regulator ArlR [Lactobacillus iners LactinV 11V1-d] gi|309806124|ref|ZP_07700143.1| response regulator ArlR [Lactobacillus iners LactinV 03V1-b] gi|308164697|gb|EFO66947.1| response regulator ArlR [Lactobacillus iners LactinV 11V1-d] gi|308167479|gb|EFO69639.1| response regulator ArlR [Lactobacillus iners LactinV 03V1-b] Length = 229 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 11/226 (4%) Query: 12 LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71 +A +EL L+ E ++ V G G++L +DAI+LDL L D+ G E+ R +R K Sbjct: 1 MARFVELELQHEKYDTTVESNGRKGLDLALRDNYDAILLDLMLPDLNGLEIARRVRQEK- 59 Query: 72 STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR------RSRGHA-- 123 +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA++R R+ G A Sbjct: 60 TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQIEKRASGEAAG 119 Query: 124 -QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q +I DL++ + V + LT +EY ++ L KN +T+E L ++ Sbjct: 120 VQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTREQLLKKIWGSD 179 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + E +++V++ LR K+ + G +YI+TV G GY++R + DE Sbjct: 180 SKIETNVVEVYVRYLRNKI-DVPGRSSYIKTVRGTGYMVRTDELDE 224 >gi|313905040|ref|ZP_07838410.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470110|gb|EFR65442.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 229 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + + V GE+ + + K +D I+LDL L + G + Sbjct: 4 RVLVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMAKENTYDIILLDLMLPKMNGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+R Sbjct: 64 VCQQIREFS-SVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRARK 122 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ ++ GDL ++ D++ V + ++LT KE+ +++LL N ++E LN Sbjct: 123 PEKAEEKTKVVQAGDLKLDCDSRRVFIGDGEVNLTAKEFDVLQLLVFNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ + Y+ T WG GY + Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIEDNPSEPRYVHTKWGVGYYFQ 228 >gi|87199648|ref|YP_496905.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135329|gb|ABD26071.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 227 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ LA ++ L E V + G G+EL FD I+LD+ L D+ GF Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV LR + P+ +++ I D++RGL+ GADDY++KPF EEL+AR+ AI RR Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 119 -SRG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S+G I GDL + T+ G + LT KE ++ LL T +++ Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ D+P I++V++ +LR+KL A G +E V G GY L Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLH--ALGPPVVENVRGFGYRL 225 >gi|148548790|ref|YP_001268892.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|148512848|gb|ABQ79708.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 226 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED + L F + GE G L + D +ILD+ L G+ Sbjct: 1 MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A+R A + TPV L+ ++ED+V GL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q ++ DL ++L + E G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + + +I+V I +LR K+ + K I TV G GYVL E A+ Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDPHPNK-LIHTVRGMGYVLEERAE 226 >gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 230 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 134/228 (58%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K +A ++L + E + V VT G G++ ++D ++LD+ L I GFE Sbjct: 5 KILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIMLPGIDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ ++DKV GL GADDY++KPF+ EEL AR+RA +R+ + Sbjct: 65 VLKKIR-EHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 123 Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + ++ D++++L V G +I LT KE+ ++E L N LT+E L ++ Sbjct: 124 HLKKDVLRYSDITMDLTTHEVRRAGIKIELTKKEFDLLEFLIKNANIALTREKILECVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + I+DV+I LR K+ + K I T+ G GY L+E+ KDE Sbjct: 184 YDYYGDTNIVDVYIRYLRSKIDDPFDRK-LIHTIRGVGYTLKED-KDE 229 >gi|319947261|ref|ZP_08021494.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746503|gb|EFV98763.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 224 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D G++G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GDEGLYEAESGIYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +STPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELRDKGVSTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G+++VNL + V+G + L GKE+ ++ +N L K + L+ Sbjct: 121 KVNENTLSYGNVTVNLSTNSTLVEGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL KN ++T+ GY+L++ Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTDFAKN-LQTLRSVGYILKD 222 >gi|206560503|ref|YP_002231267.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|198036544|emb|CAR52441.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 224 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L +EDD A+ I L + F V D G +G+ +DAI LD L G Sbjct: 1 MRVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L A+R I TPV +LS + +++++RGL++G DDY++KPF+ EL ARI ++RR + Sbjct: 61 AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q+L+ G L ++L ++ I L E++++E + T+T+ M Sbjct: 121 ASGVPQQTLLKVGALELDLISRCARRGADEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P +IDV + +LRKK+ + G I+TV G GY+L Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGANPMIQTVRGSGYML 223 >gi|209544301|ref|YP_002276530.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531978|gb|ACI51915.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 M IL++EDD + + + L+ V D G+DG+ L FD IILD L I G Sbjct: 1 MHILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L +R STPV +LS ++ ++D+V+GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 LRLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRG 120 Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R L + DL ++L +++V G RI L +E++++E L +T+ M L Sbjct: 121 RSDNAPLTRLNVADLEIDLLSRSVRRGGQRIDLQPREFRLLEYLMRHAGQVVTRTMLLEG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D +P+ +IDV + +LR+K+ I T+ GY+LR Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPFDTP-LIHTIRNAGYMLR 224 >gi|325921831|ref|ZP_08183648.1| two component transcriptional regulator, winged helix family [Xanthomonas gardneri ATCC 19865] gi|325547708|gb|EGD18745.1| two component transcriptional regulator, winged helix family [Xanthomonas gardneri ATCC 19865] Length = 221 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD LA++I ++ +++ + + + + A++LD+GL G Sbjct: 1 MHLLLVEDDTMLANAICAGVRQQSWTIDHVGSANAAKTVLVDHRYTAVLLDIGLPGESGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R +R +TPV L+ + D++RGL +GADDY+ KPF +EL+AR+RAI RRS+ Sbjct: 61 TVIRFMRGQYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAITRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L+ GD+ V+ ++ V G + L+ EY+++ L R +TK+ +Y Sbjct: 121 GRVVPLLTQGDVCVDPSSRKVTRDGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E +I V++ +LR+KL G I T++G+GY++ Sbjct: 181 GPSEGGSNMIAVYVHQLRRKL-----GDELISTIYGQGYMV 216 >gi|298346157|ref|YP_003718844.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304390083|ref|ZP_07372037.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654737|ref|ZP_07907643.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315657339|ref|ZP_07910221.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236218|gb|ADI67350.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304326565|gb|EFL93809.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491201|gb|EFU80820.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315491811|gb|EFU81420.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 225 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 124/225 (55%), Gaps = 14/225 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD A+A + L+ E + V G G L + + D +ILDLGL D+ G + Sbjct: 3 RVLLVEDDPAIAEPLTRALQREGYEVGAHVTG--GSALKQVNDSDMVILDLGLPDMDGLD 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R I+ P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RRS G Sbjct: 61 VARTIRAQGITIPILILTARTGEVDMVVGLDAGADDYVTKPFRLGELLARVRALLRRSGG 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174 + DLS D + +EV HR + LT KE++++ +L + +E Sbjct: 121 E---ITEESDLSAQ-DVR-IEVSAHRAFQGTRELQLTAKEFELLRVLVREAGAVVEREAI 175 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ G K +D+ + LR+KL + A +YI TV G G+ Sbjct: 176 MREVWGGDPSGSTKTLDMHVSWLRRKLGDDANNPHYITTVRGMGF 220 >gi|332655173|ref|ZP_08420914.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16] gi|332516033|gb|EGJ45642.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16] Length = 225 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 76/205 (37%), Positives = 121/205 (59%), Gaps = 5/205 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+++L+ ++ +L+ N++ G++ +E + +DA+ILDL + + G Sbjct: 1 MRILLAEDERSLSRAVIALLEKNNYSADAVYDGQEALEYLEAGNYDALILDLMMPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119 VLR LR PV IL+ S ++DKV GL +GA+DY++KPF+ +EL+ARIRA+ R ++ Sbjct: 61 TVLRTLREQGNPIPVLILTAKSEVDDKVLGLDTGANDYLTKPFSTQELMARIRAMTRSQT 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G S + G+ + LD T E+ L KE+QM+E+L + E FL Sbjct: 121 GGQVTSRLTFGN--ITLDQATFELSSPAGSFRLANKEFQMMEMLMRNPRQIIPTERFLER 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLS 202 ++ E E+ ++ V+I LRKKLS Sbjct: 179 IWGYDSEVELSVVWVYISYLRKKLS 203 >gi|254164047|ref|YP_003047155.1| DNA-binding transcriptional regulator BasR [Escherichia coli B str. REL606] gi|253975948|gb|ACT41619.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli B str. REL606] Length = 222 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD L + L ++E + V + E +E + ++LDLGL D Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L +R K + PV IL+ ++ DK+ GL GADDY+ K F EEL ARIRA++R Sbjct: 58 DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKLFALEELHARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +S ++ G+L++N+ + V + G + LT KEY ++ L L+ + + +E+ N Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +Y+ +EP ++V I LR K+ GK I TV G GY+L N ++ Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222 >gi|218441450|ref|YP_002379779.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174178|gb|ACK72911.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 614 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD + LK ++ V V G+ L + ++D ++LD+ L + G Sbjct: 1 MKILLVEDDPLTRTVLTQTLKDHHYTVDVATDGQTAATLTQVSQYDLLLLDVVLPSLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR P+ +L+ S D++ GL +GADDYI KP N E L+ARIRA+ RR + Sbjct: 61 SLCQQLRFQGFQEPIILLTARDSSTDQIIGLDAGADDYIVKPVNLETLMARIRALFRRKK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S+I +L VNL+ V G+ IHLT KEY ++EL + ++ + L L+D Sbjct: 121 NISSSVIHWENLQVNLNNCEVNSHGNSIHLTAKEYSLLELFLMNSQRIFSRRVILEKLWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D P + + I LR+KL AAG + IETV+G GY LR+ + Sbjct: 181 LADSPGEETVSTHIKCLRQKLK-AAGVPDPIETVYGLGYRLRKPS 224 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 2/131 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI--PGF 60 IL+I+DD ALA I L + N V + + E+ + I+LDL GF Sbjct: 365 ILIIDDDLALAERIRLEALAWNLRVEIATNLQIAREIIIQLSPNIILLDLNFETAREDGF 424 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L L + + P+ + +G S+ D+V+ + GA ++ K +E++ + + ++ Sbjct: 425 SLLEELGKTRPNLPIVVFTGRESLSDRVKVSRLGAKAFLHKSLPAQEILKTVTNVFKQHL 484 Query: 121 GHAQSLIVTGD 131 H+++ ++ D Sbjct: 485 DHSKNRVMIVD 495 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++DD A+ I +L V + + D +ILDL + + G + Sbjct: 490 RVMIVDDDSAILSQIVDLLTPWGIEVITLKYSHNFWQELTTNNPDLLILDLEIPNFNGLD 549 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R + P+ LS + + +GADDY++K + +ELV R I+RR Sbjct: 550 LCKVVRHDPKWQNLPIIFLSIYNEENIIQQMFLAGADDYLNKTYEPQELVNR---ILRRL 606 Query: 120 RGHAQ 124 + Q Sbjct: 607 KSKEQ 611 >gi|226228024|ref|YP_002762130.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091215|dbj|BAH39660.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 226 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S L++ F V G+ L +D ++LD+ L D GF Sbjct: 1 MRVLLVEDDDTLRESATAFLRASGFAVDPAGTGKMARSLAAVSPYDVVVLDIRLPDDDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + ALR + V + + ++ED++ GL GADDY+ KP+ ELVAR+RA++RR Sbjct: 61 VLCTALRARTPAPRVLMATARDAVEDRIAGLDLGADDYLVKPYALGELVARVRALMRRPD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +L+ DL ++ + G I LT KE+ ++E+L LT+E H +D Sbjct: 121 HAAPTLLRVEDLVLDPATREAGRNGRVITLTTKEFAVLEVLMRAPGRVLTREFIGEHAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +IDV+I +LR+K+ +A G + TV G GY L Sbjct: 181 DNFDPMSNVIDVYIARLRRKV-DADGDVPLLSTVRGAGYRL 220 >gi|58580811|ref|YP_199827.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425405|gb|AAW74442.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Xanthomonas oryzae pv. oryzae KACC10331] Length = 249 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +L I L+ + V G + + D +ILDLGL + G Sbjct: 18 MRILLVEDDLSLGEGIRTALRRAAYAVDWVHDGVSALMALQEQTMDLVILDLGLPRMDGI 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R R + TP+ +LS D+ GL GADDY+ KPF+ EL+AR RA++RRS Sbjct: 78 GVIRTARARAVDTPILVLSARERAADRALGLDVGADDYLGKPFDTNELLARTRALLRRSA 137 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G L ++ +V G + LT +E+ ++ LL ++ + +E HLY Sbjct: 138 GRTQPALQAGALRLDPAGMSVRWHGRDLDLTRREFALLWLLMEQRGRPIGRERIQQHLYG 197 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +DV + +LR+KLS A I T+ G GY L E Sbjct: 198 WDEDVASNAVDVHVHQLRRKLSAAV-----IRTIRGIGYALDE 235 >gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation [Oceanobacillus iheyensis HTE831] Length = 231 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 135/225 (60%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K++ ++ +++ F V G++ I + +D I+LDL L ++ G E Sbjct: 4 RILIVDDEKSIVTLLKYNMENSGFETDVAYNGQEAINKAEASMYDLIVLDLMLPEVDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR+ +++TP+ +L+ DKV GL+ GADDY++KPF+ +E++AR++AI+RRS+ Sbjct: 64 VCRTLRMNQVNTPILMLTAKDEEFDKVLGLEMGADDYLTKPFSPKEVIARVKAILRRSQL 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H ++ G+LS+ + E+ + I T KE++++ L+ K ++++ L+ + Sbjct: 124 SNNHGFHVLKIGELSIYPERYEAEMSNNIITFTRKEFELLYHLAKHKGKVISRDQLLSSV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + +I+DV I LR K+ + YI+TV G GY + E Sbjct: 184 WDYDFIGDTRIVDVHISHLRDKIEPNSKKPVYIKTVRGLGYKMEE 228 >gi|323496680|ref|ZP_08101731.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326] gi|323318262|gb|EGA71222.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326] Length = 219 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L I L+ + ++ G D + ++AI+LDLGL + G Sbjct: 1 MKILVVEDEPRLGEQIVEALEQNGWTPELSTDGIDALYRATSENWEAIVLDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R I+TPV ILS ++ +V GL +GADDY +KPF EL+ARIRA +RR+ Sbjct: 61 TVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A +I G+LS++ V QG I LT E++++ +++ + H+Y Sbjct: 121 GNASPVIQIGNLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHNPEKVISRTELVEHIYK 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VFI ++RKK++ I+TV G GY L Sbjct: 181 QDFDRDSNTIEVFIGRIRKKIA-----PKVIKTVRGLGYQL 216 >gi|315094756|gb|EFT66732.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] Length = 243 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED+ +L + + ++ E ++V + G + + D I+LD+ L D G Sbjct: 18 IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLPDFDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV+R +R+ + + P L+ +I ++ GL +G DDYI+KPF+ EE++AR+R ++RR Sbjct: 78 EVMRQIRMNQPTVPAVFLTAKDAISGRIAGLTAGGDDYITKPFSLEEVIARLRTLLRRAG 137 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + S++ GDL+++ D++ V G IHLT E++++ L+K L+ Sbjct: 138 ATEPKSDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ G I T+ G GYVL+ Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHTPMIHTMRGAGYVLK 240 >gi|304393600|ref|ZP_07375528.1| transcriptional activator protein CopR [Ahrensia sp. R2A130] gi|303294607|gb|EFL88979.1| transcriptional activator protein CopR [Ahrensia sp. R2A130] Length = 228 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL EDD +AH + L L++ V GE G EFD +I+D + G Sbjct: 3 LKILLAEDDTIVAHQLTLTLETAGHEVTHVGDGEQGEARASAAEFDVLIVDRMMPKRDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR ++TPV ILS + ++D+V GL++G DDY++KP+ + EL+AR+ A+ RRS Sbjct: 63 TMVSNLRSQGVNTPVLILSALGQVDDRVAGLRAGGDDYLTKPYAQTELLARVEALARRST 122 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ GDLS++ ++ E G I L +EY++++ L +T+ M L +++ Sbjct: 123 VQATETSSSVGDLSLDRLSRKAERSGEEIILQPREYRLLDYLMRHSGQLVTRTMLLENVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P+ +IDV + +LR K+ + K + TV G+GY L Sbjct: 183 ELNFDPQTNVIDVHVSRLRSKI-DKGFDKPLLHTVRGKGYRL 223 >gi|89896827|ref|YP_520314.1| hypothetical protein DSY4081 [Desulfitobacterium hafniense Y51] gi|89336275|dbj|BAE85870.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 234 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D++++ +E +LK E + + D GE +E + D +ILD+ L I G+E Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS I DK G GADDY+ KPF+ EL R++A++RRS Sbjct: 66 VCRTIRETS-KVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFD 124 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 QS I G+L +N ++ V V+G ++LT KE++++ ++ + T+E Sbjct: 125 KEQSAPKARKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 H++ + I VFI KLR+K+ YI+TVWG GY Sbjct: 185 LFAHMWGDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGY 230 >gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 232 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 131/227 (57%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ +L + + L+ + F V G +G++ + + DA+ILD+ + + GF Sbjct: 7 VRVLIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARAFRPDALILDVMMPGMDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR + PV L+ ++EDKV GL GADDY++KPF+ EE+V R+R I+RR+ Sbjct: 67 GMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRA- 125 Query: 121 GHA---QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 GH+ QS VT DL ++ D + V G + L+ E+ ++ + T L+K L Sbjct: 126 GHSDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILA 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 H+++ EV +++ ++ LR+K+ I T+ G GYV+RE Sbjct: 186 HVWNYDFGGEVGVVESYVSYLRRKIDTTE--PRLIHTLRGVGYVMRE 230 >gi|296133876|ref|YP_003641123.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032454|gb|ADG83222.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 231 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + +E LK E F V G + +EL D ++LDL L DI GFE Sbjct: 5 KVLVVDDEPKILKILEHTLKKERFQVITAQNGMEAVELAAKVSPDLVLLDLMLPDIDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R ++ ++ P+ +LS DK+ G + G DDY +KPF+ ELV RIRA++RRS+G Sbjct: 65 VCRRIK-SRSDIPIIVLSAKDDEVDKIVGFKLGIDDYQTKPFSPTELVLRIRAVLRRSKG 123 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ ++ D+ +N + V V G ++LT KE+ ++ LL+ N ++ L Sbjct: 124 CKEAANDGILTYKDIEINQRTRQVRVYGRNVNLTVKEFDLLWLLASYPNQVFSRMQLLEK 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + + V I +LR+K+ N +I+T+WG GY Sbjct: 184 IWDSSYYGDENTVTVHIRRLREKIENDPADPEFIKTIWGIGY 225 >gi|295097535|emb|CBK86625.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 219 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 124/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD+ + I+ L FNV + TD G+ G +DA++LDL L +I G Sbjct: 1 MRILLVEDDRLIGDGIKAGLSKMGFNVDWFTD-GKTGQAALYTAPYDAVVLDLTLPEIDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+LRA R + S PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A+VRRS Sbjct: 60 LEILRAWRESGKSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+S + G + ++ + ++G + L KE+ ++ELL L ++ LY Sbjct: 120 HGQARSELRHGKVMLDPASLVATLEGETLVLKPKEFALLELLMRNAGRVLPRKAIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + D+ ++V + LR+KL G +I TV G GY L Sbjct: 180 NWDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216 >gi|264678608|ref|YP_003278515.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni CNB-2] gi|299529834|ref|ZP_07043266.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni S44] gi|262209121|gb|ACY33219.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni CNB-2] gi|298722137|gb|EFI63062.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni S44] Length = 230 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ LA + L E F V V G DG+ L ++D I+LD L I G Sbjct: 1 MKILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL ALR K TPV +L+ +ED+V+GLQ GADDY+ KPF ELVAR+ ++RRS Sbjct: 61 AVLAALRQTK-QTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSG 119 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + DL ++L + G RI LT KE+ ++ LL R+ LT+ Sbjct: 120 PSVAQAAPEATTLRLADLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLTRTEL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D + E +++V I +LR KL ++ + TV G GYVL Sbjct: 180 ASQVWDMNFDSETNVVEVAIRRLRLKLDQPF-EQHLLHTVRGMGYVL 225 >gi|254518869|ref|ZP_05130925.1| LOW QUALITY PROTEIN: response regulator [Clostridium sp. 7_2_43FAA] gi|226912618|gb|EEH97819.1| LOW QUALITY PROTEIN: response regulator [Clostridium sp. 7_2_43FAA] Length = 194 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 76/190 (40%), Positives = 113/190 (59%), Gaps = 2/190 (1%) Query: 33 GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92 G G+E E+D +ILD+ L + GFE+ R L+ K +TPV +LS S+ DKV GLQ Sbjct: 6 GRAGLEEALENEYDLVILDVMLPSMNGFEICRRLKRGK-NTPVIMLSAKDSVMDKVNGLQ 64 Query: 93 SGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTG 152 GADDYI KPF EEL+ARI + RR S++ D+ +N ++ V+ I+LT Sbjct: 65 IGADDYIPKPFAIEELLARIEVVFRRQDNLNDSIVKFKDILINRRSRIVKRNNEEINLTN 124 Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212 KEY+++ +L K+ +T+E L ++ EPE + DV+I LR KL+N + YI+ Sbjct: 125 KEYELLMILIDNKDRIVTREELLEKIWGYGYEPETNVTDVYIRYLRSKLNN-KNKEEYIQ 183 Query: 213 TVWGRGYVLR 222 T+ GY++R Sbjct: 184 TIRSVGYIMR 193 >gi|28870461|ref|NP_793080.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|302132949|ref|ZP_07258939.1| DNA-binding heavy metal response regulator, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853708|gb|AAO56775.1| DNA-binding heavy metal response regulator, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|330875864|gb|EGH10013.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966287|gb|EGH66547.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017200|gb|EGH97256.1| DNA-binding heavy metal response regulator, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 227 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L S V D G DG+ ++D I LD L ++ G Sbjct: 3 RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 ++ LR ISTP+ ++S +S ++++VRGL++G DDY+ KPF +E+ AR+ ++RRS Sbjct: 63 IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A++++ DL +NL ++ G + L E++++E L +T+ M ++ Sbjct: 123 VSAAKTVLQVADLELNLISREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ + G I+TV G GYV+ E Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225 >gi|238920016|ref|YP_002933531.1| DNA-binding transcriptional activator CusR [Edwardsiella ictaluri 93-146] gi|238869585|gb|ACR69296.1| transcriptional activator protein CopR [Edwardsiella ictaluri 93-146] Length = 227 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 129/229 (56%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F +TD G G L +D IILD+ L D+ G+ Sbjct: 1 MKILIVEDEVKTGKYLCKGLTEAGFVADLTDNGLTGYHLAMTASYDLIILDILLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +LS + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRNANQGMPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H +S + DLS++L ++ V G RI LTGKE+ ++E + L + + + ++ Sbjct: 121 THIPESQLHVADLSLDLLSRKVTRSGKRITLTGKEFTLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D + + IDV + +LR K+ K I+TV G GY+L A DE Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDLDFEPK-LIQTVRGVGYLL--EAPDE 226 >gi|167617621|ref|ZP_02386252.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257140513|ref|ZP_05588775.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 225 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L IEDD+ A+ I LKS F V G DG+ ++D I LD L + G Sbjct: 3 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L +R + TPV +LS + ++++VRGL++G DDY++KPF+ EE+ AR+ ++RRS+ Sbjct: 63 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 122 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + G L+++L ++ V G I L EY+++E + T+T+ M + Sbjct: 123 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P +IDV + +LRKK+ + I TV G GY+L Sbjct: 183 WGYHFDPGTNLIDVHMGRLRKKI-DPPDATPMIRTVRGAGYIL 224 >gi|307293657|ref|ZP_07573501.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879808|gb|EFN11025.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 232 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD A + + F V D G DG+ L + IILD + + G Sbjct: 4 KILVVEDDADTAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGVIILDRMMPAMDGMA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ALR A I TPV ILS + + ED+V GL SGADDY+ KPF EL+AR++ ++R RG Sbjct: 64 TLKALRAAGIETPVIILSALGTPEDRVEGLTSGADDYLVKPFAFAELLARVQLLLR--RG 121 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S +VT DL ++L ++ V+ + L +E++++E + +T+ M L Sbjct: 122 GSGSAVVTHLRHDDLEMDLLSRRVKRGSRTVDLQPREFRLLEFFLRHPDQVVTRTMLLEG 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKL---SNAAGGKNYIETVWGRGYVL 221 ++D +P +IDV + +LR+KL A G + + TV G GY L Sbjct: 182 VWDYHFDPGTNVIDVHVSRLRRKLDEGGEAGGSRPLLHTVRGMGYRL 228 >gi|228921864|ref|ZP_04085177.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837789|gb|EEM83117.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 236 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR TPV +L+ +I+D+V GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 73 HVLQRLRGDNNETPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V L+ KE+ ++E + K LT++ H+++ Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVTTLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233 >gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 223 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA S+ L +E + V V G +G+ D ++LD+ L + G+ Sbjct: 1 MRLLIVEDERRLARSLAAGLTAEGYAVDVVHDGLEGLHRATEGVHDLVVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119 V ALR A PV +L+ D+ GL +GADDY++KPF+ LVAR++A++ RR Sbjct: 61 RVCAALRAAGHDVPVLMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R ++ GDL V+ + V G + LT KE+ ++E L+ R + + K L H++ Sbjct: 121 RAGGSPVLTAGDLRVDTATRRVHAGGEEVALTAKEFAVLEHLATRTDEVVGKPEILEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E + I++V+I LR+KL G + I TV G GY L Sbjct: 181 DFAYEGDPNIVEVYISALRRKL-----GADRILTVRGAGYRL 217 >gi|254387142|ref|ZP_05002413.1| response regulator [Streptomyces sp. Mg1] gi|194345958|gb|EDX26924.1| response regulator [Streptomyces sp. Mg1] Length = 223 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG EV Sbjct: 1 MLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 61 CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118 Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219 >gi|168187464|ref|ZP_02622099.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] gi|169294662|gb|EDS76795.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] Length = 231 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 134/226 (59%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+++++ I+L+L+ +NF V GEDG++ +ILD+ L I GF+ Sbjct: 6 KVLVIEDEQSISKFIKLVLQKQNFEVIQAFSGEDGLKKVTTENPVVVILDIMLPGIDGFK 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V LR S + +L+ + DK++GL++GADDY+ KPFN EL ARI +++RR Sbjct: 66 VCEILRKNYSSIGIIMLTALGQDVDKIKGLENGADDYMIKPFNPLELAARITSLIRRMNF 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + ++++G+ ++L++K ++LT KE+ ++++ +L+++ L+ Sbjct: 126 SSNTSSDILISGEFKIDLNSKIAYKNDKELNLTPKEFLLLKIFMENIGRSLSRDKLLDLA 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + KI+DV I +LR KL + Y++TVWG GY+ +E+ Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGVGYIWKED 231 >gi|83719535|ref|YP_440832.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83653360|gb|ABC37423.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 272 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L IEDD+ A+ I LKS F V G DG+ ++D I LD L + G Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L +R + TPV +LS + ++++VRGL++G DDY++KPF+ EE+ AR+ ++RRS+ Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + G L+++L ++ V G I L EY+++E + T+T+ M + Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P +IDV + +LRKK+ + I TV G GY+L Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKI-DPPDATPMIRTVRGAGYIL 271 >gi|225420338|ref|ZP_03762641.1| hypothetical protein CLOSTASPAR_06682 [Clostridium asparagiforme DSM 15981] gi|225041024|gb|EEG51270.1| hypothetical protein CLOSTASPAR_06682 [Clostridium asparagiforme DSM 15981] Length = 231 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++IED+K + IE +L++ + G DGI L + ++LDLGL DI G EV Sbjct: 7 IIIIEDEKNICSFIETILEAHGYVTSTATNGNDGIALIASTKPSVVLLDLGLPDIDGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 +R +R+ + P+ ++S + + KV L GADDY++KPF EL+ARIR +R S+ Sbjct: 67 IRRVRLWS-TVPIIVISARTQEKSKVAALDQGADDYLTKPFGTSELMARIRTALRHSQTG 125 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +Q L GDL ++ + + V+V+ +HLT EY+++ LL+ LT + +N + Sbjct: 126 ASAKSQPLYHVGDLMIDFERRLVKVKDQDVHLTQIEYKLVSLLAQNAGRVLTYDYIINEI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+ V + +R+KL YI T G GY +RE Sbjct: 186 WGPYADSNNQILRVNMAHIRRKLEANPAEPQYIYTEIGVGYRMRE 230 >gi|297538213|ref|YP_003673982.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297257560|gb|ADI29405.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 230 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLI+DD AL +E L +E F+V V + G+ G + +FD +LD+ + + G E Sbjct: 4 KILLIDDDIALTEMLEQYLVTEGFDVTVANDGQTGAQYVLAGQFDLTVLDVMMPKLNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 LR +R A PV +L+ ++V GL+SGADDY++KP EL+ARIRA++RRS+ Sbjct: 64 TLRIIRQAS-HIPVIMLTAKGDESERVMGLESGADDYVAKPCTPRELLARIRALLRRSKI 122 Query: 121 ---GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFL 175 G Q+L IV G L++ + VEV G I+LT E+ ++E+L+ + KE + L Sbjct: 123 TKDGSQQALQIVIGGLTITPAQRRVEVAGKAINLTSTEFNLLEILAKNAGHVVCKEDLAL 182 Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + GR + +DV + +R+K+ ++ G +YI+TV+ GY L Sbjct: 183 QAM--GRTLVRFDRSVDVHMSSIRQKIGTSSNGSDYIQTVYRMGYQL 227 >gi|21233316|ref|NP_639233.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770278|ref|YP_245040.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21115147|gb|AAM43115.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575610|gb|AAY51020.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 221 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD LA +I ++ +++ + + + A++LD+GL G Sbjct: 1 MHLLLVEDDTMLADAIYDGVRQQSWTIDHVGTAAAARTALVEHHYTAVLLDIGLPGDSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R +R +TPV L+ + D++RGL +GADDY+ KPF +EL+AR+RAI RRS+ Sbjct: 61 TVIRYMRGHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARVRAIARRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L+ G++SV+ ++ V G + L+ EY+++ L R +TK+ +Y Sbjct: 121 GRVVPLLTQGEVSVDPSSRKVTRNGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E +I V++ +LR+KL G I T++G+GY++ Sbjct: 181 GPSEGGSNMIAVYVHQLRRKL-----GDEVISTIYGQGYMI 216 >gi|296447623|ref|ZP_06889543.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296254888|gb|EFH01995.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 221 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR LLIEDD+ ++ L+ V G DG + E ++LD+GL DI GF Sbjct: 1 MRALLIEDDEMFGKALVRGLRDNAMTVDWVRNGRDGYAALEQAEHTIVLLDIGLPDISGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+A R A S P+ I++ +E V GL GADDYI KPF+ L+ARIRA++RR Sbjct: 61 DVLKAARKAGGSVPILIITARDGVESTVDGLDLGADDYIVKPFSLCALLARIRAVLRRVN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A SL+V+ ++ ++ + +G + LT +EY ++ L R L++ +Y Sbjct: 121 GQAHSLLVSNEIILDPSTRVAIFRGVKGVLTAREYSLLYTLMKRPGAILSRSQIEERIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E + +DV I LRKK GK+ I V+G G+++ ++ Sbjct: 181 WGEEVQSNAVDVLIHVLRKKF-----GKDIIRNVYGAGWMVTKDG 220 >gi|56540659|gb|AAV92783.1| PmrA [Salmonella enterica] Length = 222 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAERSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ + G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELAVGNLTLNMGRHQAWMDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYML 216 >gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 133/232 (57%), Gaps = 5/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ + L+ F V + GE+ IE + IILDL L + G E Sbjct: 4 KVLVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAERPEFIILDLMLPKLDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K+ TP+ +L+ DK+ GL+ GADDY++KPF+ E+VAR++AI+RR Sbjct: 64 VCKQLRQQKVMTPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAILRRTQF 123 Query: 119 SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S G +++ IV GDL + D G R+ LT KE++++ L+ K LT++ L+ Sbjct: 124 SNGETEAIDKIVIGDLKIFPDQYEAYFGGERLELTPKEFELLLYLAKHKGRVLTRDQLLS 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++ + +I+DV I LR+K+ YI+T+ G GY L E +++ Sbjct: 184 AVWNYDFAGDTRIVDVHISHLREKIEQDTKKPLYIKTIRGLGYKLEEPKRND 235 >gi|325694299|gb|EGD36213.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 224 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + GD++VNL + G + L GKE+ ++ +N L K + L+ Sbjct: 121 KFNENTLSYGDVTVNLSTNSTLKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + V +++V++ K+RKKL KN + T+ GY+L++ Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTTFAKN-LHTLRSVGYILKD 222 >gi|224476547|ref|YP_002634153.1| putative response regulator protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222421154|emb|CAL27968.1| putative response regulator protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 220 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 130/222 (58%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ LA IEL L EN+ V + + G +G++ E+D +LDL L + G E Sbjct: 3 KILIVEDEQNLARFIELELIHENYEVDIENDGAEGLKTALSKEYDLYLLDLMLPHMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K STP+ I++ DKV GL GADDYI KPF+ EEL+ARIRA +RR Sbjct: 63 ICRKIREVK-STPIIIITAKGDTYDKVAGLDYGADDYIVKPFDIEELLARIRATLRRQ-- 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ I + ++ A V + G + LT EY +++LL+ N + +E LNH++ Sbjct: 120 PAKDTITIKGIEIDKAAFRVTIDGQELELTKTEYDLLQLLTENLNHVMQREQILNHVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E ++DV+I LR KL + IETV G GYV+R+ Sbjct: 180 DSEVETNVVDVYIRYLRNKLK-PFNKEKVIETVRGVGYVIRQ 220 >gi|149910246|ref|ZP_01898891.1| Heavy metal response regulator [Moritella sp. PE36] gi|149806715|gb|EDM66680.1| Heavy metal response regulator [Moritella sp. PE36] Length = 224 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ L ++ L FNV + D G DG+ ++D ++LD+ L + G+ Sbjct: 1 MKILIIEDEVKLGKYLKQGLDESGFNVDLVDNGIDGLHQTTEMDYDLVLLDVMLPGMNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR+ PV +L+ + D+V+GL+ GADDY+SKPF+ EL+ARI + R + Sbjct: 61 DILKRLRLKPKYLPVIMLTARDDVADRVQGLELGADDYMSKPFSFCELLARIHNQL-RDK 119 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S I+T GDL N + V+ G I LT KE+ ++E L R+ L+K +H++ Sbjct: 120 GSTHSAILTIGDLEFNRLKRKVKRDGDSIDLTAKEFALLEFLLTRQGQVLSKSQIASHVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + II+V I +LR K+ I TV G GYVL Sbjct: 180 DINFDSDTNIIEVAIKRLRNKIDQGFSSP-LIHTVRGMGYVL 220 >gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium 8_1_57FAA] gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium 3_1_46FAA] Length = 233 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 11/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A I L L E F+ + GED + + YE + I+LDL L I G++ Sbjct: 6 RILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R AK P+ +LS I DKV GL+ GADDYI KPF+ +E++AR+RA++RR Sbjct: 66 VCREIR-AKSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S+ + L++NL +V G+ + + KE +++ L+ N T+E Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR+KL + K + TVWG GY Sbjct: 185 LLDRIWGYEYLGDTRTVDVHIKRLREKLKDHPQWK--LGTVWGIGY 228 >gi|323485119|ref|ZP_08090471.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum WAL-14163] gi|323694012|ref|ZP_08108196.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323401549|gb|EGA93895.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum WAL-14163] gi|323501948|gb|EGB17826.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 237 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 14/229 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A I L L E F + GE+ ++L +E + ++LDL L I G++ Sbjct: 6 RILIVDDDYNIAELISLYLTKECFETRIVGDGEEALKLFPVFEPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR A P+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCRELR-ASSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + DL VNL +V GH I + KE +++ L+ N T Sbjct: 125 APPSAAPKPTDQHGDFVEYPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E L+H++ + + +DV I +LR+K+ + K + TVWG GY Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDH--DKWALTTVWGIGY 231 >gi|310657554|ref|YP_003935275.1| DNA-binding response regulator [Clostridium sticklandii DSM 519] gi|308824332|emb|CBH20370.1| DNA-binding response regulator [Clostridium sticklandii] Length = 228 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 129/227 (56%), Gaps = 5/227 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEV 62 +++ED+ A+ + L LK E + V + GE IEL + ILD+ L I GFEV Sbjct: 1 MVLEDEYAIRSFVTLNLKREGYEVIEAESGEQAIELYNANPDIKVAILDVMLPGIDGFEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 L+ LR V +L+ + +DKV GL+ GADDYISKPF+ ELVARIR+++RR + Sbjct: 61 LKYLREKNPQMGVIMLTARTHEQDKVLGLEYGADDYISKPFSPTELVARIRSLIRRLTSN 120 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H Q ++ +G ++NL + I LT KE++++EL +L+++ LN + Sbjct: 121 HIEEKQDVLKSGPFTLNLSDRKFYKGDEEIELTPKEFEILELFLKNAKKSLSRDQILNEI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++K++DV + ++RKK+ + +++TVWG GY E+ Sbjct: 181 WGKNYFGDLKVVDVNMRRIRKKIEDDPAEPRFLKTVWGYGYRWEEDG 227 >gi|209517611|ref|ZP_03266449.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209501907|gb|EEA01925.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 240 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + + L+ +F V G G+ +FDA++LD L D+ G Sbjct: 16 RILVVEDDDRVRLEVSTALEDYDFAVEGVSSGHAGLLRALNGDFDAVVLDRMLPDVDGLS 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR TPV ILS +S+++++VRGL++G DDY++KPF+ EL AR+ A++RR Sbjct: 76 ILSTLRNVGTETPVLILSALSAVDERVRGLRAGGDDYLTKPFDSLELTARLNALLRRRSS 135 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ +++ GDL +++ V G I L +EY++++ L L +T+ M +++ Sbjct: 136 SEQANVLSVGDLVLDMGTHRVRRAGESIELKPREYELLKYLMLHTEQPVTRAMLFESVWN 195 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +ID+ I +LR+K+S I TV GYVLR Sbjct: 196 YHFNVHTNVIDMHIGQLRRKISLNGRFSLMIHTVRNVGYVLR 237 >gi|309810882|ref|ZP_07704683.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp. Ellin185] gi|308435188|gb|EFP59019.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp. Ellin185] Length = 225 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD +A ++ + LK+ +V G D + C D ++LDLGL D+ G + Sbjct: 4 RVLVVDDDPTIARTLRINLKARGLDVETVGCGLDALSTCADAMPDLVVLDLGLPDLDGVD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 VLR LR + S PV +LS +DKV L GADDY++KPF EEL+AR+RA +RR + Sbjct: 64 VLRQLRQSS-SVPVIVLSARQEADDKVEALDEGADDYVTKPFGIEELMARVRAALRRGGA 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +VT D S LD T E G +HLT E++++ L+ + + E L Sbjct: 123 EPSGPAPVVTADFS--LDFTTYEASGPTGAVHLTPTEWRLLAELARHRGRVVPHEQLLRA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + E + V+ +LR+KL +I T G GYVLR Sbjct: 181 VWGPQYGRESNYLRVYCGQLRRKLEPEPSLPRWIVTEPGIGYVLR 225 >gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174] gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174] Length = 229 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +E K ++D I+LDL L + G E Sbjct: 4 KVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKENKYDIILLDLMLPKMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL GADDYI+KPFN E+ ARI+AI+RR+R Sbjct: 64 VCQQIREFS-NVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARS 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I GDL ++ +++ V + G I+LT KE+ ++ELL N ++E LN Sbjct: 123 EHEEKEKAKTIEAGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYFQ 228 >gi|157963921|ref|YP_001503955.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157848921|gb|ABV89420.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 225 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 129/230 (56%), Gaps = 12/230 (5%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD A +IE ++K + N+ G G+ L ++D IILD L + Sbjct: 1 MKILMVEDD---ATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R +++ Sbjct: 58 DGLKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117 Query: 118 RSRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RG +Q + G L++ L + V + G I L KE+Q+++ L N +++ + Sbjct: 118 --RGESQPAVTDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLL 175 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 176 FEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQG 224 >gi|309790009|ref|ZP_07684584.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227952|gb|EFO81605.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 227 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ LA + ML E++ + V GE+G++L ++ I+D L G Sbjct: 1 MRLLIIEDDQRLARLMRRMLAEEHYTIDVAHDGEEGLDLALQGVYEIAIVDWMLPSRDGP 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 + RA+R A+ + +L+ +ED+V+GL SGADDY+ KPF EEL+AR+RA+ RR Sbjct: 61 TICRAIRAARTPMALLLLTARGQLEDRVKGLDSGADDYLVKPFAFEELLARVRALSRRFT 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G S + G++ ++L + T + LT E+ ++E L +L+++ L+++ Sbjct: 121 PSGSDTSELRVGEIVLDLRSHTARRGNRVLDLTPTEWNLLEYLMRNVGLSLSRQQILDYV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++ ++DV+I LR+KL NA G + I TV G GY L Sbjct: 181 WSYERDVQIALVDVYISYLRRKL-NAPGESDPIMTVRGVGYRL 222 >gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] Length = 342 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I L++E + + ++L + EFD IILD+ + ++ G E Sbjct: 118 KILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 177 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 178 ACMKIREDR-NIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S GH +S++ GDL+VN D + V V+G LT KE+ ++ELL+ K ++ Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + V I K+R K+ + YI+TVWG GY Sbjct: 297 EAVWEEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 340 >gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 676 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 132/226 (58%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+++A + +L E++ V V G G +L + +D IILD+ L ++ G Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + + PV ++ + +K+ GL +GADDYI+KPF EEL+AR+RA++RR + Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 121 GHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+++T L + ++++ + + +++ LT KE+ M+EL ++E ++ Sbjct: 121 T---SVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIID 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +L+ D P + + + LR+KL + IETV+G GY L+ Sbjct: 178 NLWSYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLK 223 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 28/132 (21%), Positives = 62/132 (46%), Gaps = 4/132 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL ++DD L +++ L EN+ + D + + + D ++LD+ + G E Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R A P+ + + + ++G D+ I K + +L+A + ++RS Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 Query: 120 RGHAQSLIVTGD 131 + Q +I T + Sbjct: 660 --YLQQVIATAN 669 >gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 228 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 135/222 (60%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ +++ +N V G + E+ Y+ D ++LD+ L + G + Sbjct: 7 KILIVDDDENICEVIKMYVENSGYNTQVCHDGREAQEVFLEYKPDLVLLDIMLPHVDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL+ +R + TPV +L+ DKV GL+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 VLKWIR-KEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRRYNV 125 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ DL++++++ TV +G I + KE++++ L+ KN T+E L ++ Sbjct: 126 DNENKEVLSFEDLAIDINSYTVVYKGQEIKMPPKEFELVYYLANNKNRVFTREQLLCEVW 185 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 G D P + + +DV + +LR+KL GG N+ IETVWG GY Sbjct: 186 -GYDYPGDSRTVDVHVKRLREKLQ---GGPNWQIETVWGVGY 223 >gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 220 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 127/222 (57%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ +D +ILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGPYDLVILDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR++A++ RR+ Sbjct: 61 RVCAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + V G L+V+ A+ V +G + LT KE+ ++E L LR + K L+H++ Sbjct: 121 RPGPSPVHVHGGLTVDTAARRVLREGVEVALTAKEFAVLEHLVLRPGEVVAKAEILDHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + I++V+I LR+KL G I TV G GY L Sbjct: 181 DFAYDGDPNIVEVYISALRRKL-----GAERIRTVRGAGYRL 217 >gi|187927671|ref|YP_001898158.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|309780716|ref|ZP_07675457.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA] gi|187724561|gb|ACD25726.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|308920398|gb|EFP66054.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA] Length = 224 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 87/228 (38%), Positives = 125/228 (54%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L I L+ + F V +V D GE + + A ILDLGL + G Sbjct: 1 MRILLVEDDPLLGDGIRAGLQQQGFQVDWVRD-GEAAWRELRTDAYVAAILDLGLPRMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VLR +R A I+ P+ +L+ +I D+VRGL GADDYI KP + EL AR+RA+VRR+ Sbjct: 60 VDVLRKVRGAGIAVPILVLTARDAIPDRVRGLDLGADDYIVKPIDLHELSARLRALVRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GH + + + ++TV G + L+ +E+ ++ L L L++E LY Sbjct: 120 HGHPTEQLRARGIVLEPASRTVFCNGRAVALSTREFDLLHALMLNAGRVLSREQLEQCLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAK 226 E ++V I LR KL G + I TV G GY+L R+NA+ Sbjct: 180 PWGQEVGSNSVEVHIHHLRVKL-----GSDLIVTVRGVGYMLPRDNAE 222 >gi|217966935|ref|YP_002352441.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217336034|gb|ACK41827.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 224 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-----CKFYEFDAIILDLGLT 55 M+IL+IED+K L +++ L+ E YV DL DG E F +D +ILD+ L Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEG---YVVDLAFDGEEAKYIIENNFEGYDLVILDIMLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 I G + + LR P+ +L+ +EDK+ GL+SGADDY+ KPF+ EEL+ARIRA+ Sbjct: 58 KIDGISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +RR + +++ D+S++ +K V I LT KE+ ++E L N ++KE + Sbjct: 118 LRRPKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQII 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +H++ + +++ I LRKKL +N IET+ G GY ++E Sbjct: 178 SHVWGYESDTLSNVVEAHIKNLRKKLERKR-DENIIETIRGMGYRIKE 224 >gi|311104981|ref|YP_003977834.1| transcriptional regulator QseB 1 [Achromobacter xylosoxidans A8] gi|310759670|gb|ADP15119.1| transcriptional regulatory protein QseB 1 [Achromobacter xylosoxidans A8] Length = 219 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG--IELC-KFYEFDAIILDLGLTDI 57 MRILL+EDD + S+ L++E+ Y D +DG EL + +D I+LDLGL Sbjct: 1 MRILLVEDDLMIGESVLDFLRAEH---YAVDWVKDGNAAELALRTDTYDLILLDLGLPKR 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +LR LR K TPV I + ++ D++ GL +GADDY+ KP++ +EL+AR+RA++R Sbjct: 58 DGLSLLRDLRARKDRTPVLIATARDAVSDRIAGLDAGADDYVVKPYDVDELLARMRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G A+ + ++++ + V G + LT +E+ ++E L R ++ Sbjct: 118 RSAGRAEPVFEHEGITIDPQSHAAMVDGTPVTLTAREWAVLEPLIARPGMIFSRAQLEEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY ++ ++V+I LRKKL G N I+ V G GYV+ Sbjct: 178 LYSWKESISSNAVEVYIHGLRKKL-----GPNLIQNVRGVGYVI 216 >gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 225 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD+ + + L E F V GE+G+ L ++ D ++LD+ + G+E Sbjct: 4 KILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAAWKPDLVVLDVLMPGTDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A S P+ +L+ + D+V+GL GADDY+ KPF EEL+ARIRA++RRSR Sbjct: 64 VCRRLR-AGSSLPILMLTAKDEVADRVKGLDLGADDYLVKPFALEELLARIRALLRRSRQ 122 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A +V DL+++ + V G I LT +E++++ L LT++ ++ ++ Sbjct: 123 ADTAMRPLVYADLTLDHATREVRRGGRPIQLTAREFELLALFMEHPRQVLTRDQIMDRVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++V++ LR+KL G K I TV G GYVL+E Sbjct: 183 GIDYGGESNVLEVYVGMLRQKLEE-GGEKRIIHTVRGVGYVLKE 225 >gi|299065128|emb|CBJ36292.1| putative response regulator, CheY family [Ralstonia solanacearum CMR15] Length = 224 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LA + L+ F V GE L +D ++LDL L + G Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADSLLLTQHYDVVLLDLQLPSLSGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + + PV IL+ I+DKV L +GADDY+ KPF EL+ARI+ +VRR+ Sbjct: 61 AVLQRLRDRRNAVPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDLS + ++T + G + L +E+ ++E+L L+ T++K +N ++ Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ + I+++I +LRKKL ++A I T+ G GY+LR+ Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAA---TIVTLRGLGYLLRD 220 >gi|262041138|ref|ZP_06014355.1| two component response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041512|gb|EEW42566.1| two component response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 223 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 128/229 (55%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+IL+IEDD L + L ++SE + V+ E + L + + I+LDLGL D Sbjct: 1 MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNH-YSLIVLDLGLPDEDR 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 L +R K++ PV IL+ ++ED++ GL +GADDY+ KPF EEL ARIRA++RR Sbjct: 60 LHFLSRMRREKMTQPVLILTTRDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRH 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I G+L +N+ + V + + LT KEY ++ L ++ + + +E+ N +Y Sbjct: 120 NNQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +EP ++V I LR+K+ GK+ I TV G GY+L N E Sbjct: 180 SWDNEPATNTLEVHIHNLREKI-----GKSRIRTVRGFGYMLANNIDTE 223 >gi|228989703|ref|ZP_04149685.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228770037|gb|EEM18619.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 223 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L SI +L E F V GEDG+ L +D I+LD+ L I GF Sbjct: 1 MRLLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVMLPVIDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R KI TPV L+ S+ED+V+GL G DDY+ KPF EL ARIRA++RRS Sbjct: 60 EVIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRS- 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G+ + + L K ++Q G I LT K+Y+++E L L +E + + Sbjct: 119 GNLTTKQTINYRGIELFGKDKDIQVGGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + V I++V++ LRKKL G + I+TV G GY+L+E Sbjct: 179 WGFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYMLKEQ 223 >gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra [Mycobacterium smegmatis str. MC2 155] gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra [Mycobacterium smegmatis str. MC2 155] Length = 246 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + S+ L+ F+V V G++ + L DA++LD+ + ++ G V Sbjct: 23 VLMVDDDPDVRTSVARGLRHSGFDVRVAASGKEALRLLSTESHDALVLDVQMPELDGVAV 82 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + ALR P+C+LS ++ D++ GL++GADDY++KPF+ ELVAR+ A++RR+ Sbjct: 83 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRASHT 142 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + G ++++ + V V G R+ LT +E+ ++ +L+ L+++ L ++ Sbjct: 143 EQPSDTMTVGPVTIDTARRLVFVSGERVDLTKREFDLLAVLAENAGVVLSRQRLLELVWG 202 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + DVFI LR+KL G I TV G GYVLRE Sbjct: 203 YDFDVDTNVADVFISYLRRKLER-DGVPRVIHTVRGIGYVLRE 244 >gi|300689749|ref|YP_003750744.1| transcriptional regulatory protein [Ralstonia solanacearum PSI07] gi|299076809|emb|CBJ49419.1| Transcriptional regulatory protein [Ralstonia solanacearum PSI07] Length = 221 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 12/225 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LLIEDD + ++E L+ + V +V D G+ I++ +D ++LDLGL G Sbjct: 1 MRVLLIEDDPMIGAAVEAALRDAAYAVDWVRD-GQTAIDVTGHQHYDVLLLDLGLPGQDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR LR PV IL+ ++ ++VRGL GADDY+ KPF EL+AR+RA++RR Sbjct: 60 HAVLRTLRARGNPVPVLILTARDAVGERVRGLDGGADDYVLKPFEMVELLARMRAVLRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A ++ G LS LD T EV+ G + L+G+E+ +++ L LR L++ Sbjct: 120 GGAASPVLSNGVLS--LDPATHEVRAGDGEPVRLSGREFALLQALMLRPGAILSRSELEE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y E ++ I LRKKL G + I+ V G G+++ Sbjct: 178 RIYGWGHEVASNAVEFLIHALRKKL-----GADSIKNVRGVGWMV 217 >gi|170749884|ref|YP_001756144.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656406|gb|ACB25461.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 249 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MR+L+IEDD+ A ++K+ +V D DG++ L + ++D +I+D L + Sbjct: 19 MRLLIIEDDREAA---AYLVKAFRETGHVADSAHDGLDGYALAREGDYDVLIVDRMLPKL 75 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R+LR ++TP ILS + ++D+V+GL++G DDY+ KP+ EL+AR A+ R Sbjct: 76 DGLSLIRSLREQNVATPTLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEALAR 135 Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R G ++ GDL ++ + V G I L +E++++E L +T+ M Sbjct: 136 RQAGSGAAEETRYRIGDLELDRLSHRVTRAGREIPLQPREFRLLEYLMRHAGQVVTRTML 195 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L H++D +P+ +IDV + +LR KL I TV G GYVLR Sbjct: 196 LEHVWDYHFDPQTNVIDVHVSRLRSKLDKGFPSP-IIHTVRGAGYVLR 242 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300072766|gb|ADJ62165.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 123/224 (54%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRILL EDD LA + +S + Y D ++G+E +FD +ILDLGL + Sbjct: 1 MRILLAEDDSVLADGLT---RSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR LR PV IL+ S+E +V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 SGLEVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G ++I G LS + + + + L+ +E ++E+L R ++KE ++H Sbjct: 118 RGAGGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + +E I+V++ +LRKK+ G I TV G GY L Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEV---GGVRIATVRGLGYCL 218 >gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756] gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756] Length = 233 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 11/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A I L L E F+ + GED + + YE + I+LDL L I G++ Sbjct: 6 RILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R AK P+ +LS I DKV GL+ GADDYI KPF+ +E++AR+RA++RR Sbjct: 66 VCREIR-AKSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S+ + L++NL +V G+ + + KE +++ L+ N T+E Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR+KL + K + TVWG GY Sbjct: 185 LLDRIWGYEYLGDTRTVDVHIKRLREKLKDHPHWK--LGTVWGIGY 228 >gi|296102314|ref|YP_003612460.1| two-component system, OmpR family, copper resistance phosphate [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056773|gb|ADF61511.1| two-component system, OmpR family, copper resistance phosphate [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 227 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L ++D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTEAGFVVDRADNGLTGYHLAMTADYDLLILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A PV +LS + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIIRMLRSAGKGMPVLLLSALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+S DLS++L ++ V G+RI LT KE+ ++E + L + + ++ Sbjct: 121 TVIAESQFTVADLSIDLVSRKVNRAGNRILLTSKEFSLLEFFVRHQGEVLPRSLIAAQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMSFDSDTNAIDVAVKRLRAKIDNDYEPK-LIQTVRGVGYML 221 >gi|194367131|ref|YP_002029741.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194349935|gb|ACF53058.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 231 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA +I ++ V G + ++ FD ++LD+GL + G Sbjct: 1 MRLLLVEDNPDLADAIIRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R STPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++RR+R Sbjct: 61 RVLSGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRAR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G + A V + G I L +EY+++E+L R + K+ N L+ Sbjct: 121 GQASEVVQIGGFQFDNAAHRVSLDGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE I+++I +LRKKL+ A I TV G GY+L Sbjct: 181 FDDEAGPNAIELYIGRLRKKLAAA---PLRITTVRGVGYLL 218 >gi|323484985|ref|ZP_08090339.1| hypothetical protein HMPREF9474_02090 [Clostridium symbiosum WAL-14163] gi|323692815|ref|ZP_08107042.1| transcriptional regulatory protein CutR [Clostridium symbiosum WAL-14673] gi|323401727|gb|EGA94071.1| hypothetical protein HMPREF9474_02090 [Clostridium symbiosum WAL-14163] gi|323503129|gb|EGB18964.1| transcriptional regulatory protein CutR [Clostridium symbiosum WAL-14673] Length = 225 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+IED++AL +I L+ + ++V GE +EL +D ++LDL L G Sbjct: 1 MHLLVIEDERALCETIVRSLRRQAYSVDCCYDGEKAVELLGVERYDLVLLDLNLPGKDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR T V ILS +EDKV GL +GA+DY++KPF+ EL ARIR++ R Sbjct: 61 TVLRTLRQTDRETKVLILSARGEVEDKVEGLDAGANDYLAKPFHLAELEARIRSLTLRQF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L++ G+L+ + ++T V G + LT KE ++E L + + +++E ++H++D Sbjct: 121 TQQDVLLICGELTFDTRSRTAAVNGQTLTLTRKETGILEYLMVHQGRPVSQEELMDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I V I LRKKL AA G + I G GY++ Sbjct: 181 NSVDSFSNSIRVHISALRKKL-RAALGYDPIRNRIGEGYLM 220 >gi|56540675|gb|AAV92791.1| PmrA [Salmonella bongori] gi|56540677|gb|AAV92792.1| PmrA [Salmonella bongori] Length = 222 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLARVRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G L++N+ V + G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELTVGKLTLNMGRHQVWMDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYML 216 >gi|297203139|ref|ZP_06920536.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297148318|gb|EFH28940.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 262 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++DD +A + + + E + + GE+ + + D ++LDL L D+ GF Sbjct: 37 VRLLVVDDDPPIADLVATVARYEGWEAVTANSGEEALSRAAEFRPDIVVLDLMLPDLDGF 96 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + PV L+ ++ D+V GL G DDY+ KPF EEL+AR+R ++RRS Sbjct: 97 GVLDRLRRSGTMVPVVFLTARDAVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 156 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +S++ DL+++ D + V + LT EY+++ L + T LTK L+H+ Sbjct: 157 GPGFQRSVLRVADLTMDEDTREVRRGDKLLTLTPTEYEVLRYLMRKSPTVLTKAQILDHV 216 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ ++++ + +LR+KL + G+ I TV G GYV+R+ A+ Sbjct: 217 WEYGFGGRSNVVELVVSRLRRKLDDT--GEPLIHTVRGFGYVVRQAAE 262 >gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185] gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W] gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W] gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185] Length = 342 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I L++E + + ++L + EFD IILD+ + ++ G E Sbjct: 118 KILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 177 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 178 ACMKIREDR-NIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S GH +S++ GDL+VN D + V V+G LT KE+ ++ELL+ K ++ Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + V I K+R K+ + YI+TVWG GY Sbjct: 297 EAVWEEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 340 >gi|158338636|ref|YP_001519813.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308877|gb|ABW30494.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 225 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 121/223 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD+ +A ++ L +++ V + GE G EL + + +D ++LD+ L + G Sbjct: 1 MKLLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R +R + PV +L+ + +KV GL +GADDY+ KP EE+ ARIRA++RR Sbjct: 61 AFCRQMRAQGLDIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ DL +N + V Q I LT KEY ++EL K ++ L HL+ Sbjct: 121 MTSPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLELFLRNKRRVFSRAQILEHLWA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE + I LR KL A + I+TV+G GY L++ Sbjct: 181 YEVLPEEDTVKAHIKGLRHKLKGAGAPNDLIQTVYGFGYRLKQ 223 >gi|317506419|ref|ZP_07964224.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255299|gb|EFV14564.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 226 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++ + L + F+V G + + + ++LDLGL D+ GFE Sbjct: 3 RVLVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAERQPEVVVLDLGLPDMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 VL LR + PV +LS + +KV L +GADDY++KPF +EL+AR+RA VR R Sbjct: 63 VLAGLR-GWTNVPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRRGAR 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++G + ++VT +V+L AK V G +HLT E+ M+ELL + ++++ L+ + Sbjct: 122 TQGEGEPVVVTDSFAVDLVAKKVTKDGAEVHLTPTEWGMLELLVRNQGKLVSQKDLLSEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + E + V++ +LR+KL ++ T G GY Sbjct: 182 WGPSYKTETHYLRVYLAQLRRKLEADPAHPRHLITEAGMGY 222 >gi|239927334|ref|ZP_04684287.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 226 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 130/222 (58%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LAH++ L +E ++V V G G+ + + E+ ++LDL L + G+ Sbjct: 1 MRILVVEDEVDLAHTLHTGLTAEGYSVDVAHDGRQGLWMARTGEYALVVLDLMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR + P+ +L+ D+ L +GADDY++KPF+ LVAR+RA+VRR+ Sbjct: 61 KVCAQLRREGNAVPILVLTAKDGEWDQAEALDTGADDYLAKPFSYLVLVARLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 A ++ GDLS+++ + G R+ LT +E+ ++ELL+ R ++K L H + Sbjct: 121 TAAPPVLAVGDLSLDVAGRVCRRAGVRVELTPREFAVLELLARRAGQAVSKTDLLYHAWP 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P +++ + LRKK+ +AA + ++TV G GY L Sbjct: 181 DEAQDP--NLVEARVSALRKKV-DAAFHRKSLQTVRGTGYRL 219 >gi|283834149|ref|ZP_06353890.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC 29220] gi|291070299|gb|EFE08408.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC 29220] Length = 227 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIVESQFQAADLMVDLVSRKVTRSGARITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 221 >gi|17232680|ref|NP_489228.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134327|dbj|BAB76887.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 222 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A IE L+S+ F V + FD +ILDLGL G + Sbjct: 3 RILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKDGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR + PV IL+ I+DKV G ++GADDY++KPF EEL+ R++A +R+S G Sbjct: 63 VLEELRGQGENIPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSGG 122 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++I +G++ ++L ++ V++ I L +E+ + E L++E L+ + Sbjct: 123 SQAMEETVIKSGNIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P I+DV++ LRKKL N + IETV G GY LR Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGN-----DLIETVRGMGYRLR 221 >gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 989 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 130/230 (56%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD A+++ +L ++N+ V V G+ + + Y++D I+LD+ L + G Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ +++G +S +K GL +GADDY+ KPF+ EELVARIRA++RR Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ +G L LD + E R + LT KE+ ++EL + M L HL Sbjct: 121 VTSPPVLESGKL--RLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHL 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + D P+ + + I LR+KL + +ETV+G GY L+ +D+ Sbjct: 179 WSYEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLKPLEEDK 228 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + ++ +L + E + D +ILD+ L I G E Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 + R +R + P+ L+ S E + GADD++SKP ELV RI Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRI 509 >gi|170702575|ref|ZP_02893449.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170132509|gb|EDT00963.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 232 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L IEDD+ AH I L + +V G DGI E+DA+ LD L + G + Sbjct: 11 VLTIEDDEITAHEIIGELSNRGHSVEWVSNGRDGIAQAIGGEYDAVTLDRMLPGVDGLSI 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L +R + TPV +LS +S +++++RGL++G DDY+ KPF+ EE+ R+ A++RR+R Sbjct: 71 LMTMRSIGVRTPVLMLSALSDVDERIRGLRAGGDDYLIKPFDLEEMALRLEALMRRNRAA 130 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + G LS++L + V G I L E++++E + T+T+ M ++ Sbjct: 131 PAQPEAKLSVGPLSLDLITRKVHRDGTEIALLPTEFRVLEFMMRHAGQTITRTMLFEAVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +IDV + +LRKKL + G I+T+ G GY+L Sbjct: 191 GYHFDPGTNLIDVHMGRLRKKL-DPPGETPMIQTIRGTGYML 231 >gi|198283804|ref|YP_002220125.1| winged helix family two component transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665314|ref|YP_002426436.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248325|gb|ACH83918.1| two component transcriptional regulator, winged helix family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517527|gb|ACK78113.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC 23270] Length = 220 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD+ + +I + L+ + V +V D GE + E AI LDLGL + G Sbjct: 1 MRILLVEDDRMIGEAISVALRDAAYAVDWVRD-GETALRAIANQEHQAIFLDLGLPKLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L+ +R S P+ I+S ++ D+V GL GADDY+ KPF EL+AR+RAI+RR Sbjct: 60 CTLLQRVRAGGNSLPIIIISARDALADRVEGLDLGADDYLVKPFAMGELLARLRAIIRRQ 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ G L ++L T ++ + LT KE+ +++ L LR + L++ LY Sbjct: 120 GGQGSPVLGNGSLQLDLSTHTAQIGELSVLLTNKEFALLQALLLRPGSILSRAQLEERLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ID I LRKKL G I V G G+++ Sbjct: 180 GWDEGVESNSIDFLIHGLRKKL-----GAKVIRNVRGAGWMI 216 >gi|238028823|ref|YP_002913054.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] gi|237878017|gb|ACR30350.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 224 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL IEDD +A SI L++E V + G DGI ++DA+ LD L D+ G Sbjct: 3 KILTIEDDVLIADSITRQLQAEGHTVDLARTGRDGIAKVMAGDYDAVTLDRMLPDLDGLA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 +L +R + TPV ++S MS ++ ++ GL++G DDY+ KPF+ E+VAR+ ++RR Sbjct: 63 ILATMRGVGLDTPVLVMSAMSEVDQRIAGLRAGGDDYLVKPFSLAEMVARLEVLMRRRPR 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 HA +++ G + ++L + + + L E++++E + LT+ M ++ Sbjct: 123 SAHADTVLRAGGIELDLVRRRASLGARELQLLPTEFRVLEFMMRHAGRVLTRTMIFEGVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R +P +IDV + +LR+K+ N G I T+ G GY+L Sbjct: 183 GCRFDPGTNLIDVHVGRLRRKI-NRPGEAPLIRTIRGAGYLL 223 >gi|332533011|ref|ZP_08408881.1| response regulator [Pseudoalteromonas haloplanktis ANT/505] gi|332037490|gb|EGI73943.1| response regulator [Pseudoalteromonas haloplanktis ANT/505] Length = 219 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD +A + L+ E ++V + + +E E + +ILDLGL D G Sbjct: 1 MHLLLVEDDHLVAQGLIRSLRQEGYSVEHSGTVKHALECLSSGEIELVILDLGLPDGDGS 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ ++ K PV IL+ SI+DKV+GL GADDY++KPF+ EL AR+R RR Sbjct: 61 QVLKYIKAQKKVIPVVILTARGSIDDKVQGLDMGADDYLAKPFDPAELFARLRVASRRIN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SL+ GD+ ++ A TV++ G + L KEY +++ L + +K+ N LY Sbjct: 121 QTQSSLLRCGDVVMDTSAHTVKLSGQSLTLPRKEYMLLKALMENQGRVQSKQQLENKLYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V I LRKK + ++I+T+ G GYV+ Sbjct: 181 WGEEVGSNAIEVHIHHLRKKFPS-----DFIKTLRGIGYVV 216 >gi|330940225|gb|EGH43362.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 227 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L S V D G DG+ ++D I LD L ++ G Sbjct: 3 RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 ++ LR ISTP+ ++S +S ++++VRGL++G DDY+ KPF +E+ AR+ ++RRS Sbjct: 63 IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A++++ DL +NL + G + L E++++E L +T+ M ++ Sbjct: 123 VSAAKTVLQVADLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ + G I+TV G GYV+ E Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225 >gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ LA + L LK E + V G G++ +D I+LDL L ++ G E Sbjct: 3 KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR +K TP+ +++ S+ D+V GL GADDY+ KPF EEL+ARIR+++RR Sbjct: 63 VARRLRESK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +S+I DL + + + I+LT +EY ++ L N ++E L Sbjct: 122 ETESNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINIVQSREQLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + +YI+TV G GYV+R Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228 >gi|258593899|emb|CBE70242.1| two-component response transcriptional regulator (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 244 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 119/228 (52%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD L + L E V G G E E ++LD+ L I GFE Sbjct: 3 RILVIDDDVELCELLTDYLTPEGIQVEAVHDGGQGAERALSGEHALVVLDVMLPGISGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR +R A S PV +L+ D++ GL+ GADDY+SKPFN ELVARIRAI RR++ Sbjct: 63 VLRRIR-AGSSVPVLMLTARGDDVDRIVGLEMGADDYLSKPFNPRELVARIRAIQRRAQP 121 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 G A +V GD+ V+ A V +GH + LT E+ M+E+L +++E Sbjct: 122 SVERETGTGKAVERVVVGDVEVDPGAHIVLQRGHPVDLTSVEFTMLEVLLRASGQVVSRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R P + IDV I LR+KL + G I+TV G GY+ Sbjct: 182 DLAKQALGRRLSPYDRSIDVHISSLRRKLGHQLGDTERIKTVRGMGYL 229 >gi|217970353|ref|YP_002355587.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217507680|gb|ACK54691.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 219 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD AL I + LK E + V G + +F +LDLGL + G Sbjct: 1 MRILLVEDDAALGEGIRVALKPEAYTVDWVQDGASALHALTHEDFALAVLDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR A PV +L+ + D++ GL +GADDY+ KPF+ +EL ARIRA++RRS Sbjct: 61 QVLQRLRAAANPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVDELKARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 AQ ++ G++ ++ + V +G + L KE+ ++ L + LT++ LY Sbjct: 121 NRAQPVLHHGEVVLDPVNQQVSYRGQPVVLQRKEFLLLHELLTQPGRVLTRDRLQQALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +E E ++V I LR+KL I TV G GY+ Sbjct: 181 WGEEAESNTLEVHIHHLRRKLF-----PELIRTVRGVGYL 215 >gi|54308194|ref|YP_129214.1| putative transcriptionalregulator [Photobacterium profundum SS9] gi|46912622|emb|CAG19412.1| Putative transcriptionalregulator [Photobacterium profundum SS9] Length = 225 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ L ++L L +F + G DG+ E+D I+LD+ L D+ G+ Sbjct: 1 MKILIIEDETKLGKYLQLGLNESSFATDWVNNGLDGLHQAMSPEYDLILLDVMLPDLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L ++ + P+ +L+ S+ED+V+GLQ GADDY+ KPF EL+ARI+ VR++ Sbjct: 61 KILTQIKTHYPTRPIIMLTARDSVEDRVKGLQLGADDYLVKPFAFIELIARIQNQVRKNE 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A++ + GDL V+L + V I LT KE+ ++ELL R+ L+K + ++ Sbjct: 121 NVAAKTTLTIGDLHVDLLRRRVTRNDQHIDLTAKEFLLLELLVSREKEVLSKAFIASKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V I +LRKK+ + K I T+ G GYV+ Sbjct: 181 DMNFDSDTNVIEVAIRRLRKKVDDPFEFK-LIHTLRGMGYVM 221 >gi|92116579|ref|YP_576308.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799473|gb|ABE61848.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 220 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 14/232 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + ++ LK + V G+ IE + +D +LDLGL G Sbjct: 1 MRILLVEDDQMVGAAVTQALKDAAYAVDWVKDGQTAIEAARAETYDLTLLDLGLPSRDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRA R PV I++ +I+D++ GL GADDY+ KPF EL+AR+RAI+RR Sbjct: 61 EVLRAFRTMNRQLPVIIVTARDAIDDRIHGLDLGADDYLVKPFEIRELLARMRAILRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ G +++LD T EV G LT +E+ +++ L LR T L++ H+ Sbjct: 121 SGNAAILSNG--TISLDPATHEVAHGGGAARLTAREFALLQALMLRPGTILSRVDLERHI 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 Y +E E ++ I +RKKL G + I V G G+++ D +C Sbjct: 179 YGWNEEVESNAVEFLIHAIRKKL-----GASSIRNVRGVGWMV-----DRSC 220 >gi|260600073|ref|YP_003212811.1| DNA-binding transcriptional activator CusR [Cronobacter turicensis z3032] gi|260219420|emb|CBA34772.1| Probable transcriptional regulatory protein silR [Cronobacter turicensis z3032] Length = 234 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 9 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 69 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 128 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 129 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 189 DMNFDSDTNAIDVAVKRLRAKIDNDYETK-LIQTVRGVGYML 229 >gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC 49176] gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC 49176] Length = 229 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 131/227 (57%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ + V GE+ +E+ K +D I+LDL L + GFE Sbjct: 4 KILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMVKSCAYDIILLDLMLPKMNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ DK+ GL+ GADDY++KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIREFS-DVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAILRRNEK 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + G+L ++ + + V + + I+LT KE+ ++ELL +N ++E L+ Sbjct: 123 NKVVKESTGKTLYGELGIDFEGRRVYINDNEINLTAKEFDLLELLVKDENKVYSREKLLD 182 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G D P +V+ +DV I +LR+K+ G YI T WG GY + Sbjct: 183 IIW-GSDYPGDVRTVDVHIRRLREKIEETPGEPRYIHTKWGVGYYFK 228 >gi|149926997|ref|ZP_01915255.1| two component transcriptional regulator, winged helix family protein [Limnobacter sp. MED105] gi|149824218|gb|EDM83438.1| two component transcriptional regulator, winged helix family protein [Limnobacter sp. MED105] Length = 236 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL EDD L+ + L+ + V G D +D +ILDLGL + G Sbjct: 1 MKILLAEDDSLLSEGLSQSLRQAGYAVDCMFKGSDADTALTTMNYDILILDLGLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+E +V+GL +GADDY++KPF+ +EL AR+RA+ RR Sbjct: 61 EVLRRLRARGNNMPVLILTAADSVEQRVQGLDAGADDYMAKPFDLKELEARVRALARRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S+ G L+ + + + + L+ +E ++E+L R ++KE F++HL + Sbjct: 121 GGGASIWKHGPLTFDQVGRIAYINDDMLDLSAREVGLLEVLLQRVGRLVSKEQFVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVLRENAKDET 229 +E I+V+I +LRKK+ N I TV G GY L + + E Sbjct: 181 WGEEVSNNAIEVYIHRLRKKIEVNGV----RIATVRGLGYCLEKFVEKEA 226 >gi|172057053|ref|YP_001813513.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989574|gb|ACB60496.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 238 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 131/233 (56%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ ENF + D GE +E+ E+D I+LDL + + G + Sbjct: 6 RILVVDDEERIRRLLKMYLERENFTIEEADNGETALEMALETEYDVILLDLMMPKLDGMQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V LR K +TP+ +L+ ++V G + GADDYI KPF+ E+V R++AI+RR+ Sbjct: 66 VCEELRKTK-ATPIVMLTAKGEETNRVHGFEMGADDYIVKPFSPREVVLRVKAILRRASA 124 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +IV L+++ DA V V+ ++LT KEY+++ L+ + + ++E Sbjct: 125 TKFLHTDAKTKDVIVFPHLTIDNDAHRVTVESQEVNLTPKEYELLYFLAKQTDKVFSREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENA 225 L +++ +++ +D + +LR+KL+ + I TVWG GY N Sbjct: 185 LLKEVWNYEFFGDLRTVDTHVKRLREKLNRLSPNAAQMITTVWGVGYKFENNP 237 >gi|291167113|gb|EFE29159.1| transcriptional regulator FeuP [Filifactor alocis ATCC 35896] Length = 225 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K L SI L+ + + V G+D ++ +D IILDL L + G Sbjct: 1 MRILVVEDEKTLCTSIANGLRIDGYEVDTCFNGDDAWDMALSESYDLIILDLNLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR++R T + ILS ++DK+ GL +GA+DY+ KPF+ EEL AR+R++ RR Sbjct: 61 DVLRSIREEDSETGILILSARGQLQDKIDGLDNGANDYLCKPFHFEELEARVRSLTRRRV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+L+++ A+TV +G LT KE+ ++E L L ++ + +E + H++D Sbjct: 121 VQNNLVLECGELALDTKARTVSARGTVFSLTRKEFGLLEYLMLHQDRPVGQEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I V I LRKKL G + V G+GY++ E Sbjct: 181 ASVDSFSNSIRVHISALRKKLKAVLGYDPIVNRV-GQGYIIGE 222 >gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++ + ++ ML+ E F V V G +G++ + D ++LDL L +PG EV Sbjct: 1 MLVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 61 CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118 Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219 >gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 228 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + + I + L++E + + + ++L + EFD IILD+ + ++ G E Sbjct: 5 ILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLEQKEFDLIILDIMMPNMDGIEA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + + P+ +LS S DK++GL SGADDY++KPFN EL+AR+++ +RR + + Sbjct: 65 CMKIREER-NLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRRYKKY 123 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I T GDL+VN D + V V+G + LT KE+ ++ELLS K ++ E Sbjct: 124 NTDTISTANVIEIGDLTVNTDTRQVWVRGKEVRLTPKEFDILELLSRNKGIVMSVEKIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 184 AVWKEDFFKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGTGY 226 >gi|38347964|ref|NP_941213.1| DNA-binding transcriptional activator CusR [Serratia marcescens] gi|156936338|ref|YP_001440254.1| DNA-binding transcriptional activator CusR [Cronobacter sakazakii ATCC BAA-894] gi|157412123|ref|YP_001481464.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC O1] gi|170766561|ref|ZP_02901014.1| transcriptional activator protein CopR [Escherichia albertii TW07627] gi|218697185|ref|YP_002404852.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989] gi|237728472|ref|ZP_04558953.1| SilR [Citrobacter sp. 30_2] gi|238910394|ref|ZP_04654231.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|295697874|ref|YP_003602531.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|296105224|ref|YP_003615370.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|38259441|emb|CAE51669.1| probable transcriptional regulatory protein(silver resistance) [Serratia marcescens] gi|99867148|gb|ABF67793.1| SilR [Escherichia coli APEC O1] gi|156534592|gb|ABU79418.1| hypothetical protein ESA_04238 [Cronobacter sakazakii ATCC BAA-894] gi|170123999|gb|EDS92930.1| transcriptional activator protein CopR [Escherichia albertii TW07627] gi|218353917|emb|CAV00347.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli 55989] gi|226909950|gb|EEH95868.1| SilR [Citrobacter sp. 30_2] gi|295059683|gb|ADF64421.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059986|gb|ADF64723.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|322614029|gb|EFY10965.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617921|gb|EFY14814.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625465|gb|EFY22291.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629930|gb|EFY26703.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632181|gb|EFY28932.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636468|gb|EFY33175.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322644676|gb|EFY41212.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651301|gb|EFY47685.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652785|gb|EFY49124.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659087|gb|EFY55339.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663211|gb|EFY59415.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668698|gb|EFY64851.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674498|gb|EFY70591.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678296|gb|EFY74357.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682447|gb|EFY78468.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684160|gb|EFY80166.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192284|gb|EFZ77516.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196289|gb|EFZ81441.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201437|gb|EFZ86503.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206453|gb|EFZ91414.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212045|gb|EFZ96872.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216950|gb|EGA01673.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220317|gb|EGA04771.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224364|gb|EGA08653.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228292|gb|EGA12423.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233440|gb|EGA17533.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237098|gb|EGA21165.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243687|gb|EGA27703.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246071|gb|EGA30058.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250847|gb|EGA34725.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257657|gb|EGA41343.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261866|gb|EGA45433.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267742|gb|EGA51224.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268622|gb|EGA52089.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323974959|gb|EGB70069.1| heavy metal response regulator [Escherichia coli TW10509] Length = 226 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYETK-LIQTVRGVGYML 221 >gi|237801204|ref|ZP_04589665.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024061|gb|EGI04118.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 227 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L S V D G DG+ ++D I LD L ++ G Sbjct: 3 RILAIEDDAITAKEIVTELNSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 ++ LR ISTP+ ++S +S ++++VRGL++G DDY+ KPF +E+ AR+ ++RRS Sbjct: 63 IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A++++ DL +NL + G + L E++++E L +T+ M ++ Sbjct: 123 VSAAKTVLQVADLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ + G I+TV G GYV+ E Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225 >gi|268680656|ref|YP_003305087.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] gi|268618687|gb|ACZ13052.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] Length = 224 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 128/229 (55%), Gaps = 10/229 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ +A ++ L+ E F+V + D GED + L + +D IILDL + + G Sbjct: 1 MKILIVEDDEGIASFLKQGLEEELFSVELCDNGEDALYLAQMNPYDMIILDLMIKGVQGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR K+ TP+ +LS S+I DKV L GADDY++KPF+ EEL+ARI +R+ + Sbjct: 61 VVCQKLREQKLHTPIIVLSAKSTISDKVGLLHLGADDYLTKPFSFEELLARIHVQLRK-Q 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+ DL +N K+V I LT KEY ++E L K + ++M L+ Sbjct: 120 NDKEPLLKVADLELNPVTKSVTRSKEVISLTAKEYMLLEYLMRHKGAIIEEKMLEEQLFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENA 225 ++ V++ +LR K+ KN+ I+T GY L ENA Sbjct: 180 SEQSINSNMVSVYMYRLRSKID-----KNFELKLIKTHRNLGYTLNENA 223 >gi|315304579|ref|ZP_07874825.1| regulatory protein VanR [Listeria ivanovii FSL F6-596] gi|313627057|gb|EFR95944.1| regulatory protein VanR [Listeria ivanovii FSL F6-596] Length = 231 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y+ G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q+ ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPISQDKVIIGPIVVDRALHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL +A GG+N I+T+WG GY Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGY 227 >gi|262371880|ref|ZP_06065159.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311905|gb|EEY92990.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 225 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 16/228 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A S +L+ F V + G DG+ L + FD ++LDLGL + G + Sbjct: 3 KILMIEDDFMIAESTLTLLRYHQFEVEWVNNGVDGLSLLAKHNFDLVLLDLGLPMMDGMQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + + PV I+S ++++V GL GADDY+ KP+ +EL+ARI A++R RG Sbjct: 63 VLRQIR-QRSALPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARINALLR--RG 119 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 HA++ L+ GDL ++++ +G +I L+ +E+ ++ L N +K Sbjct: 120 HAETAQLKSQSQLLKNGDLVLDVEQHLATFKGQQIELSNREWAILIPLVSHPNKIFSKAN 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + LYD E I+V++ LR KL GK++I T+ G GY L Sbjct: 180 LEDKLYDFDSEVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 222 >gi|218282706|ref|ZP_03488913.1| hypothetical protein EUBIFOR_01499 [Eubacterium biforme DSM 3989] gi|218216407|gb|EEC89945.1| hypothetical protein EUBIFOR_01499 [Eubacterium biforme DSM 3989] Length = 237 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 7/234 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+IEDD A+ + I L+ EN+ + + GI Y D ++LDLGL D+ G Sbjct: 4 VQILVIEDDVAVGNLITTTLEMENYQFRLAKTAKQGIMNVLSYNPDIMLLDLGLPDMDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ +R + + P+ ++S S +DKV+ L GADDY++KPF+ +EL+AR+R +RR Sbjct: 64 EVIKKVR-SWSNIPIIVVSARSEDQDKVKALDLGADDYLTKPFSVDELLARLRVTIRRLN 122 Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +S+ GDL++N V GH IHLT EY+++ +L+ + LT + Sbjct: 123 NSQTISVNESVYENGDLTINYAQGCVYENGHEIHLTPIEYKLLCVLAKNTDKVLTHNYIM 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKDE 228 ++ E + VF+ LRKK+ YI+T G GY +L + K E Sbjct: 183 QEVWGSVQGTETPSLRVFMATLRKKIEPDTSNPKYIQTHVGVGYRMLNQTEKKE 236 >gi|144898432|emb|CAM75296.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Magnetospirillum gryphiswaldense MSR-1] Length = 225 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+ + + LK V G DG+ L +D++I+D L + G Sbjct: 1 MRILIIEDDQEASAYLAKGLKEAGHTVDQAHNGNDGLFLATTERYDSMIVDRMLPGVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +++ +R A +TPV ILS + ++D+V+GL++G DDY+ KP+ EL+ARI A+ RR S Sbjct: 61 TIVQTIRGAGNTTPVLILSALGKVDDRVKGLKAGGDDYLVKPYAFAELLARIEALGRRTS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + DL ++L A+TV G I L +E++++E L +T+ M L +++ Sbjct: 121 ASQPETRLKVEDLEMDLLARTVTRSGRDIDLQPREFRLLEYLLRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV I +LR+K+ + I TV G GY LR Sbjct: 181 EYHFDPQTNLIDVHISRLRQKVDKDF-DQALIHTVRGAGYTLR 222 >gi|213970103|ref|ZP_03398235.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|301381459|ref|ZP_07229877.1| DNA-binding heavy metal response regulator, putative [Pseudomonas syringae pv. tomato Max13] gi|302061114|ref|ZP_07252655.1| DNA-binding heavy metal response regulator, putative [Pseudomonas syringae pv. tomato K40] gi|213925207|gb|EEB58770.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] Length = 227 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L S V D G DG+ ++D I LD L ++ G Sbjct: 3 RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 ++ LR ISTP+ ++S +S ++++VRGL+ G DDY+ KPF +E+ AR+ ++RRS Sbjct: 63 IVTHLRAQGISTPILMISALSDVDERVRGLRGGGDDYLPKPFASDEMAARVEVLLRRSNP 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A++++ DL +NL ++ G + L E++++E L +T+ M ++ Sbjct: 123 VSAAKTVLQVADLELNLISREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ + G I+TV G GYV+ E Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225 >gi|56540665|gb|AAV92786.1| PmrA [Salmonella enterica] Length = 222 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELTVGNLTLNMGRHQTWKDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|311280342|ref|YP_003942573.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749537|gb|ADO49289.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 223 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M++L++EDD L + L ++SE + VT E + L + + ++LDLGL D G Sbjct: 1 MKVLVVEDDSLLLQGLILAMQSEGYVCDGVTTAHEAALCLANSH-YSLMVLDLGLPDEDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + L +R K S PV IL+ ++ D++ GL +GADDY+ KPF EEL AR+RA++RR Sbjct: 60 LDFLSRIRREKFSLPVLILTARDTVNDRIEGLDTGADDYLVKPFALEELNARVRALLRRH 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I G++ +N+ + V ++ ++ LT KEY ++ L + + + +E+ N +Y Sbjct: 120 NNQGDNEISVGNIRINVTRRQVWLEETQLELTPKEYALLSRLMAKAGSPVHREILYNDIY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 180 SWDNEPSTNTLEVHIHNLRDKI-----GKSRIRTVRGFGYML 216 >gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 236 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 129/224 (57%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R++++EDD+A+A+ ++ L+ E + V G++G+E K YEF +++D+ L ++ GF Sbjct: 4 RLMIVEDDEAIANILKEHLEKEGYEVNWASSGKEGLEDFKTYEFALVMIDIMLPEMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R PV I+S + DKV+GL+ GADDYI+KPF+ E+ ARI A +RR + Sbjct: 64 LCKNIRWINEDIPVVIISAKQTEMDKVKGLKLGADDYITKPFSLIEVSARIEAHLRRYKK 123 Query: 122 HAQSLIVTGDLSVN------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + V G L + K V V I +T KE++++ L++ N +KE Sbjct: 124 VDRESAVNGILKFKNGLIIIPEEKKVTVNEKEIQMTIKEFELLSLMAQNPNKVFSKEELY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +H+++ D + V I +LR+K+ +++ +I+TVWG GY Sbjct: 184 HHIWESMDVEGNNTVTVHIKELREKIGDSSKNPTFIKTVWGVGY 227 >gi|256827469|ref|YP_003151428.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583612|gb|ACU94746.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 225 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 133/227 (58%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED++ L+ I L+ N+ V+ GE+G K +D I+LDL L + G+ Sbjct: 1 MDILIVEDNRPLSQVIRQCLEP-NYVVHQAFDGEEGYFYAKEGIYDLIVLDLMLPGMNGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR ++ TPV IL+ + I++++RG ++GADD+++KPF K+EL+ RI AI+RRS Sbjct: 60 EVLEWLRADRVMTPVLILTALRGIDERLRGFRAGADDFLTKPFAKDELLLRIEAILRRSM 119 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL + D+ T +QG I L G++Y ++E L R+ ++K + ++ Sbjct: 120 NLVEKREFSFKDLVLYPDSHTACIQGEEIELKGRQYDVLEFLVSRQGQLISKSQIFDKVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + +++V++ +RK+L G Y+ T+ G GY+ ++ + Sbjct: 180 GFMSDTSTNVVEVYMSAIRKQL-KPYGYDIYVRTIRGAGYLFGDDGE 225 >gi|206579174|ref|YP_002240684.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342] gi|290512113|ref|ZP_06551480.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55] gi|206568232|gb|ACI10008.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342] gi|289775108|gb|EFD83109.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55] Length = 227 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLSV+L ++ V RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 221 >gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5] Length = 233 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 11/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GED + + Y I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLVKECFDTKIVYNGEDALSAYETYHPGLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R AK STP+ +LS + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + Sbjct: 66 VCREIR-AKSSTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124 Query: 121 ------GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ V D L++NL +V GH + + KE +++ L+ N T+E Sbjct: 125 VKPEEPAEDKTKCVEYDGLTINLTNYSVVCDGHPVEMPPKELELLYFLAASPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREKIKDHPSWG--LSTVWGIGY 228 >gi|296135753|ref|YP_003642995.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295795875|gb|ADG30665.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 242 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L F V G DG+ L +D I+LD L G+ Sbjct: 18 MRILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAMLPGRDGW 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR A+ +TPV +L+ + D+VRGL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 78 SVLSELR-ARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGV 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V++ + E G R+ LT KE+ ++ LLS R L++ + ++D Sbjct: 137 TRMPDVMEVADLRVDMHRQRAERSGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWD 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV I +LR KL + TV G GYVL Sbjct: 197 MNFDSDTNVVDVHIRRLRSKLDEPFPAP-LLHTVRGVGYVL 236 >gi|256423864|ref|YP_003124517.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256038772|gb|ACU62316.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 224 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 130/227 (57%), Gaps = 15/227 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+IL+IED+ AL+ SI L EN+ Y + G+ I+ Y++D I+LDL L G Sbjct: 1 MKILIIEDEPALSKSIGAYLADENYLCEYAGNFGQ-AIDKITVYDYDCILLDLMLPGGDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++L ++ V I+S +S++DK++GLQ GADDY++KPF+ EL ARI +++RR Sbjct: 60 LKILEEIKEQNKQDGVIIISAKNSLDDKIKGLQIGADDYLTKPFHLPELAARIYSVIRRK 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 + ++I +L +NL AKTV V + + LT KE+ ++ KN ++K HL Sbjct: 120 QFGNVNIIELNELKINLLAKTVSVNDNNVVLTKKEFDLLLYFISNKNKVISKSALAEHLS 179 Query: 179 ------YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +D D I V I L+KKL+ AG NY++T++G GY Sbjct: 180 GDVADMFDNYD-----FIYVHIKNLKKKLT-EAGCDNYLKTLYGTGY 220 >gi|31074967|gb|AAP42072.1| unknown [Xanthomonas euvesicatoria] Length = 227 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++ED+ + L YV+DL G DG+ L E+D +ILD+ L + Sbjct: 1 MKILVVEDEPKTGEYLRQGLTEAG---YVSDLVPNGADGLHLALQGEYDLVILDVMLPGL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I+R Sbjct: 58 NGWQVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLGKPFSFAELLARVRIILR 117 Query: 118 RSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R G+ +++ DL ++L + V G R+ LT KE+ ++ELL R L + + + Sbjct: 118 RGHAGNEGTMLKVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIAS 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +I+V + +LR K+ K I+TV G GYVL Sbjct: 178 QVWDMNFDSDTNVIEVAMRRLRVKIDEGHAVK-LIQTVRGMGYVL 221 >gi|330808420|ref|YP_004352882.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376528|gb|AEA67878.1| Putative response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 226 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+ EDD+ +A I L ++ V + EFD ++LDLGL D G Sbjct: 1 MRVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMVGVAEFDVMVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR + TPV IL+ S+ D+V GLQ+GADDY+ KPF+ EL AR+ ++RR Sbjct: 61 KLLRQLRQQGLETPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +LI G L+ + ++ + G + L+ +E +++ L + L+ E + +Y Sbjct: 121 GRSVNLIEHGRLTYDPSSRETTLDGQPVDLSRREQSLLQALLHSRGRVLSTEQLKDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL N +ETV G GY L Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216 >gi|325679592|ref|ZP_08159167.1| putative response regulator ArlR [Ruminococcus albus 8] gi|324108622|gb|EGC02863.1| putative response regulator ArlR [Ruminococcus albus 8] Length = 225 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+K L++++ + K N++V G D + E+D IILD+ + + G Sbjct: 1 MRLLLAEDEKELSNALVAVFKHNNYSVDAVYDGLDAYDYIIGAEYDGIILDIMMPGMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R I TPV +L+ S +ED++ GL SGADDY++KPF EL+ARIRA+ RR Sbjct: 61 TVLKRIRDKGIQTPVLLLTAKSQVEDRITGLDSGADDYLTKPFAMGELLARIRAMTRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + G+++++ + + +G L KE+Q++E+L L +N ++ E + ++ Sbjct: 121 EFAPNSLKVGNVTLDRERFVISTPEGGEQKLGNKEFQVLEMLMLNRNVLISTERLMEKIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E+ ++ V+I +RKKL+ A I+ G GY L Sbjct: 181 GFDAEAEISVVWVYISYIRKKLT-AVKADIEIKASRGVGYTL 221 >gi|313674517|ref|YP_004052513.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] gi|312941215|gb|ADR20405.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] Length = 225 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED LA +IE LK E F V + YE+D +I+DL L D G Sbjct: 1 MKVLIVEDQIELAKNIEEYLKKEGFQTSVAPDFFTATDKLAAYEYDVVIIDLMLPDGNGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +LR + S ILS +SI+DKVRGL +GADDY+ KPF+ EL +R++AI R + Sbjct: 61 DLLYSLRANRKSIGTLILSAKNSIDDKVRGLDAGADDYLGKPFHLLELASRLKAIYRTRK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 + ++I + ++ D K V+V + LT KEY+M+ + LTK+ HL+ Sbjct: 121 QESSNVIELDKILIDTDKKEVKVGNQFLDLTKKEYEMLLFFANNAKRVLTKQNIAEHLWG 180 Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D D+ + + I LRKK+ A G + +ETV+G GY L++ Sbjct: 181 DFIDQSDSFDFVYQHIKNLRKKIQKATGS-DLLETVYGVGYKLKK 224 >gi|326201715|ref|ZP_08191586.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988315|gb|EGD49140.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 226 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 133/231 (57%), Gaps = 11/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------FDAIILDLGL 54 MR+LLIEDD+ L+ IE L+ E Y+T+ DG E FY +D ++LD L Sbjct: 1 MRVLLIEDDENLSAVIEEQLQKEG---YITNRCADG-ETALFYALNLEYGYDIVLLDRML 56 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G +L+A+R +I TPV +++G+ ++DK+ GL GADDY+ KPF+ +EL+AR+RA Sbjct: 57 PIIDGLTILKAMRRKQIYTPVLMMTGLGELDDKIDGLDCGADDYLVKPFHIKELLARVRA 116 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + RR + ++ DL+++ + + G+ I LT KE ++ + T T++ Sbjct: 117 LTRRPTDIVEEVLRAYDLTLDAGQRRLTSNGYSIILTQKEADVMAAFLESPDKTQTRDGL 176 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ GR E E +D +I LRK+L G K I+TV+G GY L E+ Sbjct: 177 LWKVWGGRGEVEDGNVDNYIHFLRKRLRE-LGCKTTIKTVYGAGYRLEESP 226 >gi|226303939|ref|YP_002763897.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183054|dbj|BAH31158.1| probable OmpR family two-component response regulator [Rhodococcus erythropolis PR4] Length = 231 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + +S+E L+ F+ G + A++LD+ + + G Sbjct: 6 RILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPGLDGVG 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ ALR P+C+LS SS+ D++ GL++GADDY++KPF ELVAR+RA++RR+ Sbjct: 66 VVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTTR 125 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ I G L+V+L + G RI LT +E+ ++ +L+ L++ L + Sbjct: 126 ATPSVDHPITVGPLTVDLRGHRAHIDGGRIELTKREFDLLSVLAEHAGVVLSRAQLLRLV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DVF+ LRKKL G I TV G G+VLR Sbjct: 186 WGYDFAADTNVVDVFVTYLRKKL-EVDGAPRVIHTVRGVGFVLR 228 >gi|313829791|gb|EFS67505.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|315109590|gb|EFT81566.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] Length = 243 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+IED+ +L + + ++ E ++V + G + + D I+LD+ L+D G Sbjct: 18 IRVLVIEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV+R +R+ + + L+ + ++ GL +G DDY++KPF+ EE++AR+RA++RRS Sbjct: 78 EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSG 137 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S++ GDL+++ D++ V G IHLT E++++ L+K L+ Sbjct: 138 ATEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ G K I T+ G GYVL+ Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHKPMIHTMRGAGYVLK 240 >gi|170684671|ref|ZP_02875896.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|254685761|ref|ZP_05149620.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|170670931|gb|EDT21669.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +T V +L+ +I+ +V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQKLRADNHTTSVLLLTAKDTIDGRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ LRKK+ + K I TV G GYVLR Sbjct: 181 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 221 >gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 240 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 124/231 (53%), Gaps = 4/231 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ + + L+ F+V D GE + L + Y D ++LD+ L D+ GFE Sbjct: 12 RLLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAEEYHPDLVVLDVMLPDVDGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V R LR V L+ + DKV GL G DDY++KPF+ EE+VARIRA++RR S Sbjct: 72 VTRRLRERGREQAVLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRRTGS 131 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL +N D+ V G + L+ E++++ L L N ++K L+H++ Sbjct: 132 TVDESATLRFHDLELNEDSHEVRRAGRVVELSPTEFKLLRYLLLNPNRVVSKLQILDHVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D E I++ +I LR+K+ A G I T G GYVLR + T Sbjct: 192 DYDFRGESGIVESYISYLRRKID--ADGPPLIHTKRGVGYVLRVPPESPTT 240 >gi|253701719|ref|YP_003022908.1| transcriptional regulator [Geobacter sp. M21] gi|251776569|gb|ACT19150.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 235 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+D+ A+ + L SE F ++ D G G+ D I+LDLGL D+ G E Sbjct: 11 RILVIDDEAAIRRFLHSALSSEEFTLHEADSGHGGLSAAAALRPDLILLDLGLPDLEGIE 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R P+ +LS +DKV L +GADDY++KPF EL+AR+RA +RRS Sbjct: 71 VIRRIREWS-QVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSAV 129 Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + +GDL+V+L+ + V V+G + LT EY ++ LL + +T L ++ Sbjct: 130 QLSEPVFSSGDLTVDLNLRRVTVEGGEVQLTPTEYDLLRLLITHADKVITHSQILKQIWG 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++ V I LRKK+ +I T G GY L++ Sbjct: 190 VAYQEQPQVLRVTISNLRKKIERDPSRPRHITTEPGVGYRLKQ 232 >gi|237755616|ref|ZP_04584230.1| alkaline phosphatase synthesis transcriptional regulatory protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237692211|gb|EEP61205.1| alkaline phosphatase synthesis transcriptional regulatory protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 219 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 9/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 M+ILL+ED+ L ++I +L+ N Y+ D DG E F E +D IILDL L DI Sbjct: 1 MKILLVEDNLDLNNTIREVLE---LNGYIVDSAFDGKEALNFAENSSYDVIILDLMLPDI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL+ +R I TPV IL+ + +DK+ GL GADDY++KPF+ +EL+ARIRAI R Sbjct: 58 DGLEVLKTIRSKGIYTPVIILTAKNQTKDKITGLDLGADDYVTKPFDVDELLARIRAIGR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ + +++ DL ++L K V+ G + LT K Y ++E L + ++ E L+ Sbjct: 118 RASTEKKDIVLIDDLEIDLKNKVVKKAGKFVELTPKLYCILEQLVRNRGKIVSYETLLSK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + P + + I LRK + K I+T+ G GY Sbjct: 178 CWEITEVPSRETMRANIKNLRKLID---PDKKIIKTIEGVGY 216 >gi|221065234|ref|ZP_03541339.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220710257|gb|EED65625.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 219 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 135/224 (60%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MR+LL+EDD + +++ +L+ E YV D +DG + +++D ++LDLGL ++ Sbjct: 1 MRLLLVEDDTMIGQAVQALLRGEG---YVVDWVQDGARADTALRGHQYDLVLLDLGLPEM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLR LR K +TPV + + + D++ GL +GADDY+ KP++ +EL+ARIRA+ R Sbjct: 58 DGLQVLRQLRARKDATPVLVATARDGVRDRIAGLDAGADDYVIKPYDMDELLARIRALAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ GH +++ G + +N + + V G + L+G+E+ +++ L R TL+++ + Sbjct: 118 RAAGHLEAVYEHGGIMLNPNTREASVNGQPVTLSGREWAVLQALLARPGATLSRQQLEDK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY DE ++V+I LRKKL AA + V G GY++ Sbjct: 178 LYGWGDEVSSNAVEVYIHGLRKKLGAAA-----VLNVRGLGYMV 216 >gi|120554212|ref|YP_958563.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120324061|gb|ABM18376.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 221 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 MR+LL+ED L ++ + + V D ++ +F E +D I+LDL Sbjct: 1 MRVLLVEDTAGLGEAVRDQIADDGHAV-------DWVQTLRFAEASIRTTAYDLILLDLM 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D GF LR +R I+TPV IL+ + D++ GL +GADDY+ KPF+ EL AR+ Sbjct: 54 LPDGHGFGFLRTIRATGITTPVIILTARDQVSDRIEGLNAGADDYLVKPFDLSELSARVA 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A+ RR RG+ +I G+L ++L + G + LT +E+ + E R L++ Sbjct: 114 AVARRYRGNPSPIIQVGELMIDLGDHRISRNGLPVELTAREWALFEGFIQRPGMLLSRSQ 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + LY E E I+V++ +LRKKL G++ I TV G GY L Sbjct: 174 LEDRLYAFGAEIESNTIEVYVSRLRKKL-----GRDAIVTVRGMGYRL 216 >gi|119715834|ref|YP_922799.1| response regulator receiver [Nocardioides sp. JS614] gi|119536495|gb|ABL81112.1| response regulator receiver [Nocardioides sp. JS614] Length = 226 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA S++ L++E F V V G + + + +D I+LD+ L + G+ Sbjct: 1 MRVLVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAEETSYDVILLDVMLPVLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR ++ TP+ +L+ D++ GL GADDY++KPF+ + L+ARIR++VRR Sbjct: 61 EVCRRLREREVWTPILMLTARDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL + K V G I LT +E ++ R LTK L +++D Sbjct: 121 TERPTILEVGDLRYDPARKAVSRAGQPIDLTSRELALMAFFMRRAGDVLTKLEILENVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + I++V++ +LR+K+ G + +ET G GY LR Sbjct: 181 FAFEGDPNIVEVYVGRLRRKVDKPFGCAD-LETFRGTGYRLR 221 >gi|56540671|gb|AAV92789.1| PmrA [Salmonella enterica] Length = 222 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAERSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELAVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|22299453|ref|NP_682700.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22295636|dbj|BAC09462.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 229 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 123/229 (53%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD+ +A + L + + V + E G++ + FD +ILDLGL + G Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R S P+ IL+ + DKV GL +GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ D V +HLT KEY ++E+L + L++ +++ + Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + P + + V + LR KL N IETV+G GY L N + T Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLNPNFQSAT 229 >gi|291445797|ref|ZP_06585187.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348744|gb|EFE75648.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG EV Sbjct: 1 MLVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR ++ + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 61 CRQLR-SRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118 Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219 >gi|120556126|ref|YP_960477.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325975|gb|ABM20290.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 221 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 MR+LL+ED L ++ + + V D ++ +F E +D I+LDL Sbjct: 1 MRVLLVEDTAGLGEAVRDQIADDGHAV-------DWVQTLRFAEASIRTTAYDLILLDLM 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D GF LR +R I+TPV IL+ + D++ GL +GADDY+ KPF+ EL AR+ Sbjct: 54 LPDGHGFGFLRTIRATGITTPVIILTARDQVSDRIEGLNAGADDYLVKPFDLSELSARVA 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A+ RR RG+ +I G+L ++L + G + LT +E+ + E R L++ Sbjct: 114 AVARRYRGNPSPIIQVGELMIDLGDHRISRNGLPVELTAREWALFEGFIQRPGMLLSRSQ 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + LY E E I+V++ +LRKKL G++ I TV G GY L Sbjct: 174 LEDRLYAFGAEIESNTIEVYVSRLRKKL-----GRDAIVTVRGMGYRL 216 >gi|264676158|ref|YP_003276064.1| two component transcriptional regulator [Comamonas testosteroni CNB-2] gi|299531179|ref|ZP_07044591.1| two component transcriptional regulator [Comamonas testosteroni S44] gi|262206670|gb|ACY30768.1| two component transcriptional regulator [Comamonas testosteroni CNB-2] gi|298720882|gb|EFI61827.1| two component transcriptional regulator [Comamonas testosteroni S44] Length = 234 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 128/228 (56%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGF 60 R L+IEDD A I L+ + +V V G GI +D IILD L + G Sbjct: 3 RYLIIEDDALNARYIAEGLRQQGAHVSVCGDGVQGIAQAVGENWDVIILDRMLPNGFDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR TPV +LS +S+ +++VRGL++G DDY++KPF EL AR+ A+VRR++ Sbjct: 63 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 122 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + DL VNL +++ E G + L +E++++ L + +T+ M L ++ Sbjct: 123 IPAPTREMQVADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D R +P+ +IDV I +LR K+ + I TV G GY L + +D Sbjct: 183 DYRFDPQTNVIDVHISRLRSKV-DKGFATPLIHTVRGVGYSLSDQPQD 229 >gi|170076771|ref|YP_001733409.1| OmpR family two-component response regulator [Synechococcus sp. PCC 7002] gi|169884440|gb|ACA98153.1| two-component system response regulator, OmpR family [Synechococcus sp. PCC 7002] Length = 227 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D++ L ++ +L+ E V + + G+ G+EL E+D +ILD L G Sbjct: 1 MRILLVDDERELRGALSQVLQREGHTVALAETGQQGLELACDQEYDLLILDWMLPQYSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R +TP+ L+ +++D+V GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 EICQRVRSLGRTTPILFLTAKDTVDDRVSGLDAGADDYLVKPFELRELLARVRALLRRSP 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + DL +++ + G I L+ +E Q++ LT E HL+ Sbjct: 121 GGEPPNRLRIADLELDVANQMAYRAGRAIRLSDRELQLLSYFMEHPAQLLTHEQIYQHLW 180 Query: 180 -DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DG + P ++ + LR+K+ A G + I T++G+GY E Sbjct: 181 QDGDESPSSNVLAALVRLLRRKV-EAKGDRPLIHTIYGKGYYFGEQ 225 >gi|56540679|gb|AAV92793.1| PmrA [Salmonella enterica] Length = 222 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELTVGNLTLNMGRHQAWKDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|84494699|ref|ZP_00993818.1| TcrA [Janibacter sp. HTCC2649] gi|84384192|gb|EAQ00072.1| TcrA [Janibacter sp. HTCC2649] Length = 231 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+KALA +I L +E F V V G G L +D I+LD+ L G+ Sbjct: 1 MRVLLVEDEKALAETIRRGLTAEGFVVDVAHDGVTGQWLATENPYDVIVLDIMLPGRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR K+ P +L+ D+ + GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 DVLRNLRALKVWAPAMMLTAKDGEYDQTDAFELGADDYLTKPFSFVVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L ++ + +TV GH I LT KE+ +++ L L+K L++++D Sbjct: 121 PARPVDLRVGGLLLDPNKRTVSRNGHAITLTAKEFSVLQFLMRHPEVVLSKAEILDNVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++V++ LR+K+ A G + +ETV G GY L Sbjct: 181 QAFDGSDNIVEVYVGYLRRKIDQAFGVTS-LETVRGMGYRL 220 >gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED++ LA ++ +L+ E V++ G G+++ ++D ILDL L D+ G Sbjct: 1 MAILVVEDEQRLARLLQRVLQDEGHTVHLAYDGVTGLDMALRGDYDLAILDLMLPDLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R LR A++ TP+ +L+ ++ED+V GL +GADDY+ KPF ELVAR+ A++RR+R Sbjct: 61 EICRHLRAARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRRAR 120 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +++ DL+++L G I LT KE+ ++E L LT+ ++ + Sbjct: 121 GTDGPPTILQVADLTLDLLRHEARRGGQVIELTPKEFALLEYLMRNPGRALTRSQIIDRV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++D++I LR K+ + I+TV G GY Sbjct: 181 WQYDLDSLSNVVDIYIHYLRDKIDRGF-DRPLIKTVRGVGY 220 >gi|187928863|ref|YP_001899350.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|187725753|gb|ACD26918.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 228 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 128/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG L E+D ++LD+ L D+ G+ Sbjct: 1 MKLLVVEDEPKTGEYLQQGLTEAGFVVDLACNGTDGRHLAMTGEYDLLVLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++++LR ++ + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QIVQSLRASEQAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I DL ++L + G +I LT KE+ ++ELL R+ L + + + ++ Sbjct: 121 SAVTADRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I+TV G GYVL Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDHFEPK-LIQTVRGMGYVL 221 >gi|56540673|gb|AAV92790.1| PmrA [Salmonella enterica] Length = 222 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAERSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELAVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|312144080|ref|YP_003995526.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311904731|gb|ADQ15172.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 229 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 135/228 (59%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A +EL L+ E + V D G DGI K ++D ++LDL L + G E Sbjct: 4 KILIIEDDAQIARFVELELEHEGYQVKKFDNGYDGINALKEDDYDLLLLDLMLPGLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ +L+ S +EDKV GL +GADDY++KPF EEL+ARIRA++RR +G Sbjct: 64 VCNKIREFS-DLPIIMLTAKSELEDKVAGLDTGADDYLTKPFEIEELLARIRALLRRDKG 122 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S ++ D+ VNLDA V+ G +I LT KEY ++ L + ++++ LN+++ Sbjct: 123 TIESANILNISDIEVNLDAHQVKRAGQKIELTKKEYDLLVYLIKNEGIVVSRDKLLNNVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E I+DV+I LR K+ K I TV G GYV+R + D Sbjct: 183 GYNYTGETNIVDVYIRYLRSKIDEPFEEK-LIHTVRGVGYVMRSDQDD 229 >gi|300702441|ref|YP_003744041.1| response regulator, chey family [Ralstonia solanacearum CFBP2957] gi|299070102|emb|CBJ41389.1| putative response regulator, CheY family [Ralstonia solanacearum CFBP2957] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LA + L+ F V GE L +D ++LDL L + G Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADSLLLTQHYDVVLLDLQLPSLSGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + + PV IL+ I+DKV L +GADDY+ KPF EL+ARI+ +VRR+ Sbjct: 61 AVLQRLRDRRNAVPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDLS + ++T + G + L +E+ ++E+L L+ T++K +N ++ Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ + I+++I +LRKKL ++A I T+ G GY+LR+ Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAA---TIVTLRGLGYLLRD 220 >gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 231 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 131/226 (57%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ +A ++L L+ E + + G +G+ + ++D I+LD+ L ++ G + Sbjct: 4 RILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQYREQQWDLILLDIMLPEMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL+ +R + TPV +L+ S +EDKV+GL GA+DY++KPF EEL+ARIR + S+ Sbjct: 64 VLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALWFSQK 123 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + G LS+N + V I LT +EY ++ L LT+E L ++ Sbjct: 124 VSPKQVALSFGHLSINEQTREVVYFDKEIQLTPREYDLLFYLLKHPKQVLTREQILEAVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++DV+I +R+KL AA I+T+ G GYVL+E++ Sbjct: 184 GYDYYGDTNVVDVYIRYVRQKL-EAANPTPLIQTIRGVGYVLKEHS 228 >gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 230 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 131/227 (57%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A I+L L+ E + + G +G+ + +++D ++LD+ L ++ G E Sbjct: 5 RILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPELSGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 VLR +R TPV +L+ ++ DKV GL GA+DYI+KPF EEL ARIR +R S Sbjct: 65 VLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPAS 124 Query: 120 RGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A+ T G+L VN + V + I LT KEY ++ + KN L+ E L Sbjct: 125 TSTAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLLT 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + I+ V+I LRKK+ +A+ YI+TV G GY+L+E Sbjct: 185 NVWGFDYYGDTNIVYVYIRYLRKKI-DASFSTPYIQTVRGVGYMLKE 230 >gi|74317767|ref|YP_315507.1| two component heavy metal response transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74057262|gb|AAZ97702.1| Two component Heavy metal response Transcriptional regulator, Winged helix family [Thiobacillus denitrificans ATCC 25259] Length = 242 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 131/230 (56%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++ED+ + L F VTDL G DG+EL K +D +ILD+ L + Sbjct: 13 MKILIVEDEPKTGAYLRQGLTEAGF---VTDLARDGWDGLELAKSGHYDLMILDVMLPGL 69 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++VL +R A I TPV L+ +ED+V+GL+ GADDY+ KPF EL+AR+ +++R Sbjct: 70 DGWQVLEGVRRAGIGTPVLFLTARDRVEDRVKGLELGADDYLVKPFAFAELLARVHSLMR 129 Query: 118 RSRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + +S ++ DL ++L + G RI LT KE+ ++EL RK L + + + Sbjct: 130 RGQAALESAVLKAADLELDLLRRRATRAGRRIDLTAKEFALLELFLRRKGEVLPRSLIAS 189 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + + +IDV + +LR K+ K I TV G GYVL +A+ Sbjct: 190 QVWDMNFDSDTNVIDVAVRRLRVKIDEGFDAK-LIHTVRGMGYVLETSAE 238 >gi|332760827|gb|EGJ91115.1| transcriptional activator protein irlR [Shigella flexneri 4343-70] gi|333007818|gb|EGK27294.1| transcriptional activator protein irlR [Shigella flexneri K-218] Length = 227 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V + G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTLSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221 >gi|227524026|ref|ZP_03954075.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088765|gb|EEI24077.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 230 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 136/233 (58%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 + IL+IEDD++LA S++L L + T + DG E E +D ++LDL L + Sbjct: 4 LHILIIEDDESLAQSLQLFLGE----IAQTTVSHDGFEGQMLGEEGIYDLVVLDLMLPQV 59 Query: 58 PGFEVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G+++L+ R + +S PV IL+ +++DKV G + GADDY++KPF++EEL+ R++A++ Sbjct: 60 NGYDILKHWRTESHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALL 119 Query: 117 RRSRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +RS GH + +V +V+L +TV V+ ++ L GKE+ ++ +T +TKE Sbjct: 120 KRS-GHLGNDNQMVVEPFTVDLSNRTVTVRDQQLELNGKEFDLLVYFLQNPDTIITKEQI 178 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + L+ E + +++V++ LRKK+ A K I+T+ GY+ D Sbjct: 179 FDRLWGFESETAISVVEVYMSNLRKKIKTATDLKP-IKTLRNVGYMFETKELD 230 >gi|83746136|ref|ZP_00943190.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|207722061|ref|YP_002252499.1| response regulator protein [Ralstonia solanacearum MolK2] gi|207741825|ref|YP_002258217.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|83727102|gb|EAP74226.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|206587235|emb|CAQ17819.1| response regulator protein [Ralstonia solanacearum MolK2] gi|206593209|emb|CAQ60136.1| response regulator protein [Ralstonia solanacearum IPO1609] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LA + L+ F V GE L +D ++LDL L + G Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + + PV IL+ I+DKV L +GADDY+ KPF EL+ARI+ +VRR+ Sbjct: 61 AVLQRLRDRRSAVPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDLS + ++T + G + L +E+ ++E+L L+ T++K +N ++ Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D+ + I+++I +LRKKL ++A I T+ G GY+LR+ + Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAA---TIVTLRGLGYLLRDAS 222 >gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758] gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758] Length = 229 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + + L+ ++ V GE+ +E+ K E+D I+LD+ L GFE Sbjct: 4 KVLVVDDEKLIVKGLRFSLEQDDMEVDCAYDGEEALEMVKRKEYDMILLDVMLPKYDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R PV +L+ DK+ GL+ GADDYI+KPFN E+ AR++AI+RR Sbjct: 64 VCRQIRDFS-DVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIMRRVAK 122 Query: 119 SRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + S ++V GDL ++ +++ V ++LT KE+ ++ELL++ N ++E LN Sbjct: 123 KDGMSASGKVVVKGDLKIDCESRRVFSGDRELNLTAKEFDLLELLAMNPNKVYSRESLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY R Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIEVNPSDPKYVYTKWGVGYYFR 228 >gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC 27755] gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC 27755] Length = 234 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 128/227 (56%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+A+A + L L E F+ + GE + Y + ++LDL L I G++ Sbjct: 6 KILIVDDDEAIAELVSLYLAKECFDTMMVHDGEKALVAFDTYHPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ +TP+ +LS + DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIR-ARANTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQA 124 Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + D + +NL +V V G + + KE +++ L+ N T+E Sbjct: 125 VPKPEVPAVDKGKCVEYPGIEINLTNYSVLVDGQNVEMPPKELELLYFLASSPNQVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR+K+ + G K + TVWG GY Sbjct: 185 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHNGWK--LATVWGIGY 229 >gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 124/221 (56%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++DD+ + ++ L E F VY GE G+ K Y+ ++LD+ + + G E Sbjct: 4 RVLLVDDDQTILSLLKRGLAYEGFEVYTAPDGETGLAATKKYQPHLVLLDIAMPGLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R L V + +L+ + DKV L GADDY+ KPF+ +ELVAR+RA++RR G Sbjct: 64 LCRRLHVLG-DIAIIMLTARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVLRRHTG 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +Q ++ DL +N + V G I LT +EY ++ LL LT++ L ++ Sbjct: 123 -SQEMLSYSDLELNQATREVHRDGQLIELTTREYDLLLLLMRHPRQVLTRDQILEQVWGY 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +++V + LR+KL A+GG I+T+ G GYVL+ Sbjct: 182 NADLETNVLEVHMGHLRQKL-EASGGSRVIQTIRGVGYVLK 221 >gi|257091795|ref|YP_003165436.1| winged helix family two component heavy metal response transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044319|gb|ACV33507.1| two component heavy metal response transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 227 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + ++ L F V + GEDG+ +D +ILD+ L I G+ Sbjct: 1 MKILVVEDEPKTGNYLKQGLLEAGFVVDLARDGEDGMHCALTEAYDLVILDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R + PV L+ ++D+VRGL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 SVLRGIRKSGKDMPVLFLTARDHVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGG 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S + DL ++L + V G RI LT KE+ ++ELL R+ L + + + ++ Sbjct: 121 KATESEFLRAADLELDLMRRRVNRSGKRIDLTAKEFALLELLLRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +I+V I +LR K+ + K I TV G GYVL A Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKMDDGFEPK-LIRTVRGMGYVLEVTA 225 >gi|77465432|ref|YP_354935.1| transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77389850|gb|ABA81034.1| transcriptional regulator, winged helix family [Rhodobacter sphaeroides 2.4.1] Length = 221 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA +++ L+ F ED F+A++LDL L D G Sbjct: 2 MRILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR A+ + PV +L+ ++D+VRGL GADDY+ KPF EEL AR+RA+ RR Sbjct: 62 ELLAELRAAREAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + ++++L A G + L+ +E+ ++ L L+K LY Sbjct: 122 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++E E I+V + KLR KL G +IETV G GY L E Sbjct: 182 WQEEIESNAIEVHVHKLRAKL-----GHGFIETVRGVGYRLAE 219 >gi|311067831|ref|YP_003972754.1| two-component response regulator YkoH [Bacillus atrophaeus 1942] gi|310868348|gb|ADP31823.1| two-component response regulator (YkoH) [Bacillus atrophaeus 1942] Length = 225 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ +A ++L L+ E + + + G +G+ +F ++LD+ L + G EV Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYKATIKETGTEGLHAALEEKFALVLLDVMLPGLSGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + TPV +L+ SI DKV GL GA+DY++KPF EEL+ARIRA +R++ Sbjct: 66 LRRLRKTDMHTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGSD 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + GDL VN + V+ + LT +E+ ++ L LT+E L ++ Sbjct: 126 PGTFLSLGDLQVNEKTREVKRADQEVELTPREFDLLVFLLKHPQQVLTREQILASVWGFD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DV+I +RKK+ + K I TV G GY ++E Sbjct: 186 YLGDTNVVDVYIRYIRKKM-DYPYEKQLIHTVRGVGYAIKE 225 >gi|227509360|ref|ZP_03939409.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512243|ref|ZP_03942292.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227084521|gb|EEI19833.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227191072|gb|EEI71139.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 230 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 136/233 (58%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 + IL+IEDD++LA S++L L + T + DG E E +D ++LDL L + Sbjct: 4 LHILIIEDDESLAQSLQLFLGE----IAQTTVSHDGFEGQMLGEEGIYDLVVLDLMLPQV 59 Query: 58 PGFEVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G+++L+ R + +S PV IL+ +++DKV G + GADDY++KPF++EEL+ R++A++ Sbjct: 60 NGYDILKHWRTESHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALL 119 Query: 117 RRSRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +RS GH + +V +V+L +TV V+ ++ L GKE+ ++ +T +TKE Sbjct: 120 KRS-GHLGNDNQMVVEPFTVDLSNRTVTVRDQQLELNGKEFDLLVYFLQNPDTIITKEQI 178 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + L+ E + +++V++ LRKK+ A K I+T+ GY+ D Sbjct: 179 FDRLWGFESETAISVVEVYMSNLRKKIKTATDLKP-IKTLRNVGYMFETEELD 230 >gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12] gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12] Length = 232 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 134/230 (58%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDDK + +S+ L+L E + V V G + + K + D ++LD+ L + G+E Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R KIS P+ +L+ DKV GL+ GADDYI+KPF +EL+ARI A++RR + Sbjct: 63 VCKEIR--KISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 IV ++L +TV+V+G ++L+ +E+++++LL T++M + H+ Sbjct: 121 SDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + E + +DV+I LR+K+ + YI TV GY +E +D+ Sbjct: 181 WGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGNEDK 230 >gi|307329401|ref|ZP_07608563.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306884935|gb|EFN15959.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 131/221 (59%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++ +A +++ L++E F V + + GE + L + ++ I+LDL L G+ Sbjct: 1 MQVLVVEDEQNIALAVDRGLRAEGFGVDIAENGEKALGLIRHNDYAVIVLDLMLPGRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR A I+TPV IL+ D+ L GADDY++KPF+ L+ARIRA++RRS Sbjct: 61 DVCRTLRAAGIATPVLILTAKDGEYDEADALDLGADDYLTKPFSFVVLLARIRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++ A R+ LT +E+ ++E L +T ++K L ++D Sbjct: 121 PQRSPVLRAGDLWLDPAAHRCGRGDERLDLTPREFGLLEFLLRHPDTVVSKTDLLAQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + I++V++ LR+K+ + G++ I+TV G GY L Sbjct: 181 AWFEGDPNIVEVYVGYLRRKI-DIPFGRSAIDTVRGVGYRL 220 >gi|237737656|ref|ZP_04568137.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] gi|229419536|gb|EEO34583.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] Length = 232 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 131/221 (59%), Gaps = 4/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD + ++L L+ E + V + G++G+E K +D I+LDL L +I G EV Sbjct: 4 ILIIEDDLRIRRILQLELEHEGYLVSLAKDGKEGLEKAKLIRYDLILLDLMLPEISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ +I KV L GADDYI+KPFN EEL AR+R +R + + Sbjct: 64 CKELR-KNSDVPIIVLTAKENIRSKVELLDMGADDYITKPFNIEELFARMRVALRNKKDY 122 Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + + DL +++ K + ++ ++ LT EY+++EL L + T+++E + ++ Sbjct: 123 QELNQLKYEDLVLDIIKKELIIEKRKVSLTKTEYRLLELFILNREITISREKIITEIWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E KI+DV++ LRKK+ A K YI+ + G GY+L+ Sbjct: 183 DFEGEEKIVDVYLNSLRKKIE--APNKKYIQNIRGFGYMLK 221 >gi|309812765|ref|ZP_07706504.1| response regulator MprA [Dermacoccus sp. Ellin185] gi|308433282|gb|EFP57175.1| response regulator MprA [Dermacoccus sp. Ellin185] Length = 209 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 123/208 (59%), Gaps = 5/208 (2%) Query: 18 LMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCI 77 + L+ E +++ G ++ K ++ DA++LD+ L D G EVLR +R + PV Sbjct: 1 MALRYEGWDIKTAATGNSAVKTAKEFKPDAVVLDMMLPDFDGLEVLRRMRDEDPALPVLF 60 Query: 78 LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ---SLIVTGDLSV 134 L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS A+ SL+ GDL++ Sbjct: 61 LTARDAVEDRVAGLTAGGDDYVTKPFSLEEVVARVRALLRRSVQLAEEETSLLTVGDLTL 120 Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFI 194 + D+ V G I+LT E++++ L L+K L+ ++ + +++++I Sbjct: 121 DEDSHEVMRAGTEINLTATEFELLRFLMRNPKRVLSKAQILDRVWHYDFGGQANVVELYI 180 Query: 195 CKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LRKK+ AG + I T+ G GYVL+ Sbjct: 181 SYLRKKID--AGREPMIHTMRGAGYVLK 206 >gi|299132545|ref|ZP_07025740.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298592682|gb|EFI52882.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 221 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ + S+ LK E V G DG + ++LD+GL G Sbjct: 1 MRVLLIEDDRMIGDSLIAALKREGMTVDWVRTGADGEDALANGGHGLVLLDIGLPGRSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R A STPV I++ ++D++ GL GADDYI KPF EL+AR+RA++RR Sbjct: 61 DLLKDARRAGNSTPVLIITARDGVDDRIIGLDVGADDYIVKPFEMRELLARMRAVLRRHA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQS+++ GD++++L++ +G L +E+ ++ L+ R L++ +Y Sbjct: 121 GAAQSILIAGDVTLDLESHEATYRGTTAVLPAREFALMHALAERPGAILSRSRIEERIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E E ID I +RKK K+ + V G G+++ Sbjct: 181 WGEEVESNAIDFLIHSIRKKFD-----KDVVRNVRGAGWMI 216 >gi|300853701|ref|YP_003778685.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433816|gb|ADK13583.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++A I L+ ENF V + G +G+ K +FD +ILD+ L I GF Sbjct: 4 KILIIEDDLSIAELIRDYLELENFEVVICTDGIEGLNNFKENKFDLLILDIMLPQIDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L +++ K PV ++S DK++GL GADDYI+KPF+ ELVAR+++ ++ Sbjct: 64 ILHSIQEEK-DIPVLLVSAKKEEIDKIKGLTLGADDYITKPFSPSELVARVKSHIKNYEK 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++I+ G L +N D + V V G ++L KE++++ L+ N +KE Sbjct: 123 IKGKFVKPPKNNIIIRG-LEINQDCRQVFVNGREVNLAQKEFEILSFLAQNPNRVFSKED 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I ++R+K+ ++ YIETVWG GY LR Sbjct: 182 LFEKIWGLDAIGDTSTVTVHIGRIREKIESSPSNPQYIETVWGAGYRLR 230 >gi|291548597|emb|CBL24859.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 233 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 128/226 (56%), Gaps = 11/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GED + Y+ + I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTKLVYDGEDALAAFDSYQPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R +K +TP+ +LS S + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + Sbjct: 66 VCREIR-SKAATPIIMLSAKSEVFDKVLGLELGADDYIMKPFDPKEMVARVRAVLRRYQV 124 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ L++NL +V GH + + KE +++ L+ N T+E Sbjct: 125 GQQNDTSVEKTKCAEFDGLTINLTNYSVVCDGHPVDMPPKELELLYCLAASPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 185 LLDRIWGYEYIGDTRTVDVHIKRLREKIKDHPHWN--ISTVWGIGY 228 >gi|83716824|ref|YP_439933.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|167578456|ref|ZP_02371330.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] gi|167616593|ref|ZP_02385224.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257143098|ref|ZP_05591360.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83650649|gb|ABC34713.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 240 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 132/237 (55%), Gaps = 15/237 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD LA I L S F+V V G+ + + ++ +ILDL L + G E Sbjct: 9 RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + PV IL+ S + D+V GL++GADDY++KP LVAR RA++RR + Sbjct: 69 VCRRIR-GFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 127 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A +V G+L+++ +TV +G + L E+ ++ +L+ T L+++ L Sbjct: 128 GAPVDSPASEALVFGELTISPPNRTVTWRGEPVDLKTAEFNLLLILARSAGTVLSRDDIL 187 Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L +DG D + +D I KLR++ +A+ + I+T+WGRGY+ +A D+ Sbjct: 188 KQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240 >gi|325267975|ref|ZP_08134623.1| two component response regulator [Kingella denitrificans ATCC 33394] gi|324980578|gb|EGC16242.1| two component response regulator [Kingella denitrificans ATCC 33394] Length = 237 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 13/226 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRILL+EDD +A ++ + LK N Y D +DG+ +D ++LDLGL Sbjct: 13 MRILLVEDDGMIAQAVMMGLKHAN---YAVDWVQDGLAAQTALAGQNYDLVLLDLGLPKQ 69 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +LR +R + TPV I++ ++ ++ GL GADDY+ KPF+ EL+ARIRA++R Sbjct: 70 DGLSMLRHIRQNRNLTPVLIVTAQDDLDSRLSGLDGGADDYVVKPFDMAELLARIRAVLR 129 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R G A LI G +++N V++ G I L+ KE+ +++ L R T ++ Sbjct: 130 RHHGQAAPLISNGVITLNPATYQVQLAGQEENISLSNKEFAILQALVSRAGTIHSRADLE 189 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +Y DE E ID I LRKK+ GK+ I+ + G G+++ Sbjct: 190 DKIYGWGDEVESNAIDFLIHSLRKKI-----GKDLIKNIRGVGWLV 230 >gi|89072828|ref|ZP_01159385.1| Response regulator [Photobacterium sp. SKA34] gi|89051350|gb|EAR56805.1| Response regulator [Photobacterium sp. SKA34] Length = 219 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 11/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I L+ +V +L DGI+ +DAI+LDLGL + Sbjct: 1 MKILVVEDEVTLGEQIIAGLEHSG---WVAELSCDGIDALYRATSEPWDAIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ +R ++ PV ILS + + +V GL +GADDY++KPF ELVAR+RA +R Sbjct: 58 DGITVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G+A +I G+LS++ V +G I LT E++++ L + +++ + H Sbjct: 118 RSTGNASPVIQAGNLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +Y + + I+VFI ++R+K+ G + I+TV G GY Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRRKI-----GNDVIKTVRGLGY 214 >gi|312884061|ref|ZP_07743775.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309368280|gb|EFP95818.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 218 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L ++ L ++ GE + + F +ILD+ L I G Sbjct: 1 MRVLLVEDDTMLGETMTASLARHHYTADWVTTGESALHALQTDSFPLVILDISLPGISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R TPV ILS + D+V GL GADDY+ KPF EEL+AR+ A++RRS Sbjct: 61 QVLKKMRDRGDKTPVLILSARDELNDRVYGLNHGADDYLVKPFQLEELLARMGALIRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I D+S+++ + V + I+LT E+++++ L L+K L +++ Sbjct: 121 GSADDIITVRDVSMSIHSHKVSIAEEEINLTPNEFKILQYLITNAGRVLSKTQILQNMHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+V I LRKK+ K IE + G GY+++ Sbjct: 181 WDESAGLNSIEVHIHNLRKKMP-----KGTIENIRGVGYIIQH 218 >gi|326315633|ref|YP_004233305.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372469|gb|ADX44738.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 223 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD AL I ML+SE + V V + GE + E++A +LDLGL GF Sbjct: 1 MRILVVEDDPALRLGIRRMLQSEGWQVDVANDGELALTAVATAEYEAAVLDLGLPRRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119 EVLR R + V IL+ ++ +VRGL GADD+++KPF +ELVAR+RAI RRS Sbjct: 61 EVLRRWREQRRDLAVLILTARDELDQRVRGLNEGADDFLAKPFEAQELVARLRAITRRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G +++ GDLS + +++ + ++ R+ L+ +E ++ELL + K ++ + Sbjct: 121 KGLMTNVLRIGDLSFDTESRELRLREERLPLSPREAALVELLMASPGKAVAKSRIVSAMS 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++++I KLR+KL AG I TV G GY + Sbjct: 181 TWETDFSANAVEIYILKLRRKL---AGSGVAIVTVRGVGYAM 219 >gi|89902709|ref|YP_525180.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89347446|gb|ABD71649.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 124/227 (54%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L+S V +V E L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRTLRSSGAAVDHVASGTEADAALMTNTEFDLLILDLGLPKMHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR + PV IL+ +E++V+GL GADDY++KPF+ EL AR+RA+ RR Sbjct: 61 LEVLKKLRARGSALPVLILTAADGVEERVKGLDLGADDYMAKPFSLHELEARVRALSRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A S I G L + + + G + L+ +E ++E++ R ++K+ + L Sbjct: 121 MGSASSTIKHGPLIYDQSGRVATIDGVMVELSARELGLLEVMLQRVGRLVSKDQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + +E I+V+I +LRKK+ G I TV G GY L + K Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPIRIATVRGLGYCLEKIPK 224 >gi|262275374|ref|ZP_06053184.1| DNA-binding response regulator [Grimontia hollisae CIP 101886] gi|262220619|gb|EEY71934.1| DNA-binding response regulator [Grimontia hollisae CIP 101886] Length = 218 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ L S+ + L + F V LG L K F A+ILDL L D G Sbjct: 1 MRILLVEDDQMLGESMVVSLSRQGFTVDWVQLGNGVDTLVKTESFTAVILDLTLPDTDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R + P+ IL+ I D+V+GL GADDY+ KPF EEL+AR+R ++RR Sbjct: 61 QVLKQVRRVNATLPIMILTARDEIGDRVKGLDGGADDYMIKPFALEELMARLRVMIRRIS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + I +S++L V V G I LT E++++ L ++K+ L+ Sbjct: 121 GFSDTNISLHGVSLSLANNCVTVNGEAIKLTPNEFKLLSTLMSHAGRVMSKDQLQQSLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D I+V I LRKK+ G I+ + G GY++ Sbjct: 181 WDDMASDNAIEVHIHNLRKKM-----GGELIKNIRGVGYII 216 >gi|217969842|ref|YP_002355076.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217507169|gb|ACK54180.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 230 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL EDD +A I L+ V +V D G + +D +ILDLGL + G Sbjct: 1 MRILLAEDDPVIADGICRALRRGGCAVDHVAD-GMEADAALAGQGYDLLILDLGLPRMNG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR K + PV IL+ ++D+VRGL +GADDY++KPF EL AR+RA+ RR Sbjct: 60 IEVLKRLRARKSAQPVLILTAQDGVDDRVRGLDAGADDYLTKPFALPELEARVRALTRRG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + I G LS + + V++ G + L+ +E ++E+ LR ++K+ ++HL Sbjct: 120 TGQPRC-IEIGQLSYDQADRVVKIGGQLVELSAREIGLLEIFLLRVGRLVSKDQLVDHLC 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKKL ++ I TV G GY L Sbjct: 179 GWGEEVSSNAIEVYVHRLRKKLEDSG---VRIVTVRGLGYCL 217 >gi|73541504|ref|YP_296024.1| two component heavy metal response transcriptional regulator [Ralstonia eutropha JMP134] gi|72118917|gb|AAZ61180.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L +F V V G DG+ +E+D IILD+ L + G+ Sbjct: 1 MKILVVEDEPKTGEYLRKGLTESSFVVDVAVTGGDGLHQATEHEYDLIILDVMLPGMSGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR K TPV L+ +ED+VRGL+ G DDY++KPF EL+AR+R ++RR Sbjct: 61 DVLRQLRERK-DTPVLFLTARDEVEDRVRGLELGGDDYLAKPFAFVELLARVRTLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I GDL +++ V G RI LT +E+ ++ L+ R L++ + ++D Sbjct: 120 VREADRIEIGDLEIDVIRHRVTRAGQRIDLTPREFALLHFLARRHGEVLSRTHIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV I +LR K+ + K I +V G GYVL Sbjct: 180 MNFDSDTNVVDVAIRRLRAKMDDHFAPK-LIHSVRGIGYVL 219 >gi|17548109|ref|NP_521511.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430416|emb|CAD16889.1| probable response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LA + L+ F V GE L +D ++LDL L + G Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + + PV IL+ I+DKV L +GADDY+ KPF EL+ARI+ +VRR+ Sbjct: 61 AVLQRLRDRRNAVPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDLS + ++T + G + L +E+ ++E+L L+ T++K +N ++ Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ + I+++I +LRKKL ++A I T+ G GY+LR+ Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAA---TIVTLRGLGYLLRD 220 >gi|318058490|ref|ZP_07977213.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075596|ref|ZP_07982928.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|333026125|ref|ZP_08454189.1| putative response regulator [Streptomyces sp. Tu6071] gi|332745977|gb|EGJ76418.1| putative response regulator [Streptomyces sp. Tu6071] Length = 223 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 6/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++ + ++ ML+ E F V + G DG++ + D ++LDL L +PG EV Sbjct: 1 MLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 61 CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118 Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + T G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 119 PEEVTPTALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ Y+ TV G GY Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPSAPRYLVTVRGLGY 219 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] gi|151281427|gb|ABR89837.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 123/224 (54%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRILL EDD LA + L+ Y TD ++G E + +FD +ILDLGL + Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSG---YATDCVKNGAEADSVLSTQDFDLLILDLGLPKM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL+ LR PV IL+ SIE +V+GL GADD+++KPF EL AR+RA+ R Sbjct: 58 SGLEVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G ++I G LS + + + + L+ +E ++E+L R ++KE ++H Sbjct: 118 RGAGGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + +E I+V++ +LRKK+ G I TV G GY L Sbjct: 178 LCEWSEEVSNNAIEVYVHRLRKKIEI---GGLRIATVRGLGYCL 218 >gi|126736572|ref|ZP_01752312.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] gi|126713885|gb|EBA10756.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] Length = 220 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+ LA ++ L SE V V G + L + +D IILDLGL G Sbjct: 1 MRILIAEDEPVLASQLKKTLMSEGLTVDVAVDGAEAQYLGETEPYDVIILDLGLPIRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR T + IL+ + D+V GL +GADDY++KPF+ EL AR+RA++RR Sbjct: 61 TVLKNLRSGGNDTSILILTARNDWTDRVDGLDAGADDYLTKPFHMAELSARVRALIRRKA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + D++ + V V G ++LT +E ++ L +++ +H+Y Sbjct: 121 GKATPVFSKDDVTFDTRTNQVMVDGVPMNLTSQEIAVLSYLFHNSGRLVSRTELSDHIYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I VF+ +LRKKL G + IETV GRGYV++ Sbjct: 181 HDGDRDSNTIAVFVNRLRKKL-----GSDLIETVRGRGYVIK 217 >gi|302552564|ref|ZP_07304906.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470182|gb|EFL33275.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 268 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ ++ + + L+ E + + G+ I+ + + DA++LD+ L D+ G Sbjct: 42 VRVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAIQSARDFRPDAVVLDMMLPDMDGL 101 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 102 AVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 161 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++S++V GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 162 AADRRSESMLVVGDLTLDEDSHEVTRAGDNIHLTATEFELLRFLMRNPRRVLSKAQILDR 221 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+K+ AG + I T G GY+++ Sbjct: 222 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 264 >gi|37519850|ref|NP_923227.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210841|dbj|BAC88222.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 230 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 121/225 (53%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL EDD+ +A + L +++ V V G+ Y +D ++LD+ L +I GF Sbjct: 2 VRILLAEDDERIAIPLAEDLTHQHYLVDVAADGKAAWHYATSYHYDVLLLDVMLPEIDGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR A P+ +L+ + D+V GL SGADDY+ KPF+ EEL AR+RA++RRS Sbjct: 62 ALCRRLREAGYEQPILMLTALDRTTDRVAGLDSGADDYLVKPFSLEELGARVRALLRRSG 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G LS++ G +HLT KEY+++E L ++EM L+ L++ Sbjct: 122 PTRGPVLKAGPLSLDPLMLQATYGGLPVHLTPKEYRLLECLLRHPGQIFSREMLLDRLWE 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +LR+KL A ++ ++TV G GY A Sbjct: 182 PAHAGGDDAVKALVLRLRRKLQEAGAPQDLLKTVHGFGYCFNRCA 226 >gi|148547951|ref|YP_001268053.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148512009|gb|ABQ78869.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 219 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED L ++ + + V + + +D I+LDL L D G Sbjct: 1 MRVLLVEDAPGLGEAVREQIADDGHAVDWVQRLDHARNSVRSTPYDLILLDLMLPDGRGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR R A TPV IL+ I D++ GL +GADDY+ KPF+ EL AR+ A+ RR Sbjct: 61 DFLRQQRAAGDVTPVIILTAQDQISDRIAGLNAGADDYLVKPFDLFELSARVAAVGRRYS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ I GDL V++ A+TV+ + LT +E+ + E R + L+K LY Sbjct: 121 GNPNPQIRLGDLQVDMSARTVQRGSATVDLTAREWALFEAFVQRPSALLSKSQLEERLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V+I +LRKKL G+ IETV G GY L Sbjct: 181 FGAEIESNTIEVYISRLRKKL-----GRELIETVRGMGYRL 216 >gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ LA + L LK E + V G G++ +D I+LDL L ++ G E Sbjct: 3 KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR K TP+ +++ S+ D+V GL GADDY+ KPF EEL+ARIR+++RR Sbjct: 63 VARRLRETK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +S+I DL + + + I+LT +EY ++ L N ++E L Sbjct: 122 ETESSDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + +YI+TV G GYV+R Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228 >gi|294670535|ref|ZP_06735415.1| hypothetical protein NEIELOOT_02257 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307814|gb|EFE49057.1| hypothetical protein NEIELOOT_02257 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 225 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A + LK + V G + + +D I+LDLGL G Sbjct: 1 MRVLLVEDDAMIAEAAACGLKDSGYAVDWIKNGGQVVSAVQAQPYDLILLDLGLPGCDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR A S P+ I++ + ++ GL GADDYI KPF+ EL AR+RA++RR Sbjct: 61 QILAELRAAGCSVPILIVTARDDLHSRLGGLDGGADDYIVKPFDMAELQARMRAVLRRHN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +Q+L G L+++ + V V G I L+ KE+ +++ L +R L++ + + Sbjct: 121 GQSQALPSNGLLTLDPATRRVRVAGQEGDIMLSNKEFAVLQALLMRPGMILSRTDLEDKI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y +E E +D I LRKKL GK +I+ V G G+++ Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKEHIQNVRGAGWLV 218 >gi|268592860|ref|ZP_06127081.1| QseB [Providencia rettgeri DSM 1131] gi|291311649|gb|EFE52102.1| QseB [Providencia rettgeri DSM 1131] Length = 220 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59 MRILLIEDD+ + +++ L F + G+ G +L F +DA++LDL L +I G Sbjct: 1 MRILLIEDDRLIGDGLKVGLTQLGFTIDWFMDGKQG-QLALFDAPYDAVVLDLSLPNIDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++L+ R PV IL+ +++ +V+GLQ GADDY+ KPF E++AR++A++RR Sbjct: 60 MDILKHWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALMEVMARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S + GD+ ++ A TV QG + L GKE+ ++ L N ++ + LY Sbjct: 120 SGQLSSKLTHGDVEMDPVAMTVTQQGEPVQLKGKEFALLSLFMHNPNKVFSRPLIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +E ++V I LR+KL N +I T+ G GY L ++ Sbjct: 180 NWDEEVSSNSVEVHIHHLRRKLGN-----KFIRTIHGVGYRLGDD 219 >gi|225028056|ref|ZP_03717248.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353] gi|224954656|gb|EEG35865.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353] Length = 245 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++A+A L+ +F V + + GE G++ + D IILDL L D+ GFE+ Sbjct: 4 ILIIEDERAVAELERDYLEINSFKVSIEETGEGGLQRALKGDIDLIILDLMLPDMDGFEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 R LR +I P+ I+S S DK+RGL GADDYI+KPF+ ELVAR++A + Sbjct: 64 CRELR-HRIDIPILIVSAKKSDIDKIRGLGIGADDYITKPFSPNELVARVKAHLNRYIRL 122 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R R I L ++ A+ V V T KE+ ++ L+ N +K+ + Sbjct: 123 TRKRIDVNEYIEYPGLKIDKSARRVFVNEEERFFTTKEFDLLTYLATHPNHVFSKDELFS 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E+ + V I K+RKK NA YIETVWG GY R Sbjct: 183 AVWGMDSMGEIATVTVHIKKIRKKTENANVKSGYIETVWGSGYRFR 228 >gi|116696122|ref|YP_841698.1| response regulator [Ralstonia eutropha H16] gi|113530621|emb|CAJ96968.1| response regulator of copper response,OmpR-family [Ralstonia eutropha H16] Length = 231 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V + G DG L +D +ILD+ L D+ G+ Sbjct: 1 MKLLVVEDESKTGEYLRQGLTEAGFVVDLVANGLDGQHLAMTEPYDLVILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ALR A+I+ PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 RIVQALRAAEIAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I DL ++L + G RI LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 AQMALDRIQVADLVLDLGRRRATRAGRRITLTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I+TV G GYVL Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDEFEPK-LIQTVRGMGYVL 221 >gi|56540661|gb|AAV92784.1| PmrA [Salmonella enterica] gi|56540663|gb|AAV92785.1| PmrA [Salmonella enterica] Length = 222 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELTVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|170701551|ref|ZP_02892501.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170133545|gb|EDT01923.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 224 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L +EDD A+ I L + F V D G +G+ +DAI LD L G Sbjct: 1 MRVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L A+R I TPV +LS + +++++RGL++G DDY++KPF+ EL ARI ++RR + Sbjct: 61 AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q+L+ G L ++L ++ I L E++++E + T+T+ M Sbjct: 121 ASGVPQQTLLTVGALELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +P +IDV + +LRKK+ + G I+TV G GY+LR Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGVVPMIQTVRGSGYMLR 224 >gi|160933828|ref|ZP_02081216.1| hypothetical protein CLOLEP_02690 [Clostridium leptum DSM 753] gi|156867705|gb|EDO61077.1| hypothetical protein CLOLEP_02690 [Clostridium leptum DSM 753] Length = 226 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+ EDD L S++ + ++ + V G D + + E+D +I D+ + + G Sbjct: 1 MRLLIAEDDTRLLKSLKHIFEANQYMVDAVSNGMDALAYAESEEYDGLIFDIMMPGMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR + TP L+ + I+ +V GL +GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 EVLKRLREKGVCTPALFLTAKTEIDQRVEGLDAGADDYLPKPFSTPELLARVRAMLRRRD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L G L +N ++ + + L+G+E+Q++E+L R N + + F++H++ Sbjct: 121 NYVPDLCKFGGLILNRSTYELQCEDKKTALSGREFQIMEMLMDRPNFIIPIDDFMSHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +V +I V I +RKKL++ I + G GY L E Sbjct: 181 WESDVDVSVIWVHISNIRKKLASMKANVE-IRFIRGAGYKLEE 222 >gi|150376401|ref|YP_001312997.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030948|gb|ABR63064.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 225 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ALA + +L+ + V V G + FD +ILDL L ++ G Sbjct: 1 MRILLVEDNRALAEGLSTLLRGSGYAVDVVSDGASAHAVAAAESFDLVILDLNLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R + V IL+ + E++V+GL GADDY+ KPF+ E AR+R ++RR Sbjct: 61 DVLRAMRARQNRAAVLILTARGAPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S++ G++S++L ++ G I + +E ++ELL +R + K+ + L D Sbjct: 121 GLRASVVSYGEVSLDLTTRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D+ I+ ++ +LRK+LS + T G GY L + A E Sbjct: 181 LDDDLSPNAIEQYVSRLRKRLSPYG---LTVRTARGIGYYLDKTADPE 225 >gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD ++ ++L L E + V GE G++L + + D +++D+ L + G E Sbjct: 4 RILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTEQPDLVVVDVMLPRMGGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV--RRS 119 V+R +R P+ ILS + DKV GLQ GADDY+ KPF +EL+ARI A++ RRS Sbjct: 64 VIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRRS 123 Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RG +++ G++ ++LDA+ V G + LT +E+ ++ + ++E + Sbjct: 124 RGEGAQPKAIRRAGEIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLME 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + +D F+ +LR + + A ++ETV G GY Sbjct: 184 AVWGSRYFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGY 226 >gi|254517651|ref|ZP_05129707.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA] gi|226911400|gb|EEH96601.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA] Length = 233 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL++EDDKA+ + I L ++N + + GE + L ++ D IILDLGL DI G Sbjct: 4 VSILVVEDDKAIRNFISATLDIHSYNCFTAENGEQAMILATSHKPDIIILDLGLPDIDGV 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++++ +R A + P+ ++S S +DK+ L SGADDY++KPF+ +EL+ARIR +R+ Sbjct: 64 DIIKKIR-AWSNCPIIVVSARSEDKDKIEALDSGADDYLTKPFSVDELLARIRVAIRKMN 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + + GDL ++ + V V HLT EY+++ LL+ LT L Sbjct: 123 YDNTKKEESTEFINGDLKIDYVSGCVFVGKEETHLTPIEYKLLCLLAKNVGKVLTHTYIL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E EV + VF+ LRKK+ YI+T G GY L Sbjct: 183 KEIWGVAYESEVPSLRVFMATLRKKIEKNCEKNTYIQTHIGVGYRL 228 >gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM 20098] gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM 20098] Length = 262 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L NF V G + IE+ + + D I+LD+ L DI GF V Sbjct: 28 IVVVDDEPSIRELLVASLHFANFEVSTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 87 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 88 TRRIRQEGINAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 147 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL +N D+ V G I L+ EY+++ L L+K L+H++ Sbjct: 148 TEEDPIIRVGDLEINEDSHDVTRSGQTIDLSPTEYKLLRYLMDNAGRVLSKAQILDHVWQ 207 Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223 + I++ +I LRKK +++ G K+ IET G GY++RE Sbjct: 208 YDWGGDAAIVESYISYLRKKVDGIEVTDENGDKHKVTPLIETKRGIGYMIRE 259 >gi|291438629|ref|ZP_06578019.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341524|gb|EFE68480.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 268 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++++ + + L+ E + ++ G+ + + DA++LD+ L D+ G Sbjct: 43 VRVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMMLPDMDGL 102 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ S+E++V GL +G DDY++KPF EE+VAR+R ++RRS Sbjct: 103 SVLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSG 162 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A SL+V GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 163 AADRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDR 222 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++++I LRKK+ AG + I T G GY+++ Sbjct: 223 VWSYDFGGHANVVELYISYLRKKID--AGREPMIHTRRGAGYMIK 265 >gi|56416091|ref|YP_153166.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365017|ref|YP_002144654.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|204926850|ref|ZP_03218052.1| DNA-binding response regulator BasR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|56130348|gb|AAV79854.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096494|emb|CAR62101.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|204323515|gb|EDZ08710.1| DNA-binding response regulator BasR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322615448|gb|EFY12368.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618508|gb|EFY15397.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622079|gb|EFY18929.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627151|gb|EFY23943.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631110|gb|EFY27874.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637671|gb|EFY34372.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642482|gb|EFY39083.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643642|gb|EFY40196.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648285|gb|EFY44745.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653516|gb|EFY49846.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659657|gb|EFY55900.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662133|gb|EFY58349.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666120|gb|EFY62298.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672540|gb|EFY68651.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675969|gb|EFY72040.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680454|gb|EFY76492.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684651|gb|EFY80655.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194670|gb|EFZ79861.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197156|gb|EFZ82296.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201727|gb|EFZ86791.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206241|gb|EFZ91203.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213252|gb|EFZ98054.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215623|gb|EGA00367.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222045|gb|EGA06431.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227912|gb|EGA12066.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229081|gb|EGA13210.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236308|gb|EGA20384.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237572|gb|EGA21633.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241762|gb|EGA25791.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248090|gb|EGA32027.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254579|gb|EGA38390.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258361|gb|EGA42038.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259640|gb|EGA43274.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265913|gb|EGA49409.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270355|gb|EGA53803.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 222 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|317046592|ref|YP_004114240.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316948209|gb|ADU67684.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 219 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 6/206 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MR+LL+EDD+ + +++ L++ ++V D DG+ + + ++LDLGL Sbjct: 1 MRVLLVEDDEMIGANLQQALEAAGWSV---DWVRDGVFATNAWTEGGYSCVLLDLGLPRE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VLR R TPV +L+ ++ +V+GL SGADDY+ KPF+ +E++AR+RAI R Sbjct: 58 DGIHVLRRARNRGDMTPVLVLTARDTVAQRVQGLDSGADDYLLKPFDLQEVLARMRAITR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G A SL+ +GD+ +++ + V +G R LT +EY ++ L R L++E N Sbjct: 118 RRHGAADSLLGSGDVQLDMMTREVLYKGQREQLTAREYALLYALLERPGAILSREQLENR 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSN 203 +Y +E +DV I +R+KL N Sbjct: 178 IYGWGEEVTSNAVDVLIHGMRRKLDN 203 >gi|218508769|ref|ZP_03506647.1| probable two-component response regulator protein [Rhizobium etli Brasil 5] Length = 412 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 73/200 (36%), Positives = 116/200 (58%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA + L+ + + + GED + K E+ A+ILDL L + G Sbjct: 1 MRLLVVEDNKDLAAWLGKALRQAQYAIDIAHDGEDAEHMLKVAEYSAMILDLALPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV IL+ +S++ +V GL SGADDY++KPF EL ARIRA+VRR + Sbjct: 61 TLLKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S I GDL + + V G + LT +EY ++E L ++ TT++K ++ Sbjct: 121 DRASSEITVGDLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKLGTTVSKTALSESVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKK 200 DE + I+++I + K+ Sbjct: 181 FDDEADPSAIEIYIHRAAKE 200 >gi|548535|sp|P36556|BASR_SALTY RecName: Full=Transcriptional regulatory protein BasR gi|295211|gb|AAA72365.1| PmrA [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 222 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRIRQKKYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|308084098|gb|ADO13165.1| QseB [Edwardsiella tarda ATCC 15947] Length = 219 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ + I+ L F + G G+ +DA+ILDL L I G Sbjct: 1 MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R A + PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR+ Sbjct: 61 EILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+ + G ++++ + T + G + L KE+ ++ELL L + + LY+ Sbjct: 121 GQTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V I LR+KL +A +I TV G GY L Sbjct: 181 WEGDVSSNAVEVHIHHLRRKLGSA-----FIRTVHGVGYTL 216 >gi|299768936|ref|YP_003730962.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1] gi|298699024|gb|ADI89589.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1] Length = 222 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 11/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A S +L+ F V + G DG+ +FD I+LDLGL + G + Sbjct: 3 KILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDIILLDLGLPMMDGMQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + TPV I+S ++++V GL GADDY+ KP+ +EL+ARI A++RR+ Sbjct: 63 VLKQIR-QRAVTPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRTGV 121 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 AQ L+ GDL +N++ +G RI L+ +E+ ++ L N +K + Sbjct: 122 EAQLANHEQLLQNGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LYD E I+V++ LR KL GK++I T+ G GY L Sbjct: 182 KLYDFDSEVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 221 >gi|255601445|ref|XP_002537677.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] gi|223515490|gb|EEF24706.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] Length = 228 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 133/223 (59%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 +++L++ED++ +A ++ L + V+ D G DG+ L ++AII+D L I G Sbjct: 4 IKLLIVEDNERVALFLKKGLSESGYEVHHADNGRDGMLLAASTPYEAIIMDRMLPGGIDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ALR + P+ ILS M+ ++D+++GLQSG DDY+ KPF+ EL+AR+ AI+RRS Sbjct: 64 LSIIEALRKTGNNVPILILSAMAEVDDRIKGLQSGGDDYLIKPFSFGELLARVEAIIRRS 123 Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + + +V G+L +++ V G I L +E+ ++E L N +T+ M L ++ Sbjct: 124 RELTERTYLVVGNLHMDIMKHKVYRDGKAILLQPREFHLLEYLMRHANKVVTRTMLLENV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D +P+ ++DV I KLR+KL + ++T+ GY+L Sbjct: 184 WDYDFDPQTNVVDVHISKLRQKL-DIDSLPPMLKTIRNAGYML 225 >gi|194364697|ref|YP_002027307.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347501|gb|ACF50624.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 227 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L IEDD A I L+S F+V + G +G+ L + ++ I LD L I G Sbjct: 3 RVLTIEDDLVTAEEIATELRSHGFDVDLASDGSNGLALARAGDYAVITLDRMLPGIDGLA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 ++ LR I+TPV ++S +S ++++VRGL++G DDY++KPF +E+ AR+ ++RR Sbjct: 63 LVTTLRREGITTPVLMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLIRRQGP 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +++ GDL ++L ++ G I L E++++E L +T+ M ++ Sbjct: 123 TGAIDNVLRAGDLELDLMTRSARRGGDEIALLPTEFKLLEFLVRNAGQVVTRSMLFQEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +IDV I ++RK++ G I TV G GYV Sbjct: 183 GYHFDPGTNLIDVHIGRVRKRIEQ-PGRPQPIMTVRGTGYVF 223 >gi|327396126|dbj|BAK13548.1| transcriptional regulatory protein QseB [Pantoea ananatis AJ13355] Length = 219 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 11/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MR+LL+EDD+ + +++ L++ ++V D DG+ + + ++LDLGL Sbjct: 1 MRVLLVEDDEMIGANLQQALEAAGWSV---DWVRDGVYAQNAWSEGGYSCVLLDLGLPRD 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLR R +TPV IL+ ++ +V+GL GADDY+ KPF+ +E++AR+RAI R Sbjct: 58 DGLQVLRRARGRGDATPVLILTARDTVAQRVQGLDYGADDYLLKPFDLQEVMARMRAITR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G A S++ +GD+ +++ + V +G R LT +EY ++ L R L++E N Sbjct: 118 RHHGSADSVLGSGDVQLDMLTREVLYKGQREQLTAREYALLYALLERPGAILSREQLENR 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +Y +E +DV I +R+KL N + I V G G+ Sbjct: 178 IYGWGEEVSSNAVDVLIHGMRRKLDN-----DVIRNVRGLGW 214 >gi|312127464|ref|YP_003992338.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777483|gb|ADQ06969.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 232 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 133/229 (58%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G+EV Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGLQALEILKHNKVDLVILDIMMSDKDGYEV 63 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 L+ +R K + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++RR Sbjct: 64 LKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + GD+ V+ +TV+ + L+ KE+++++LL K L ++ L Sbjct: 124 SLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFILQR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|239930282|ref|ZP_04687235.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 256 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++++ + + L+ E + ++ G+ + + DA++LD+ L D+ G Sbjct: 31 VRVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMMLPDMDGL 90 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ S+E++V GL +G DDY++KPF EE+VAR+R ++RRS Sbjct: 91 SVLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSG 150 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A SL+V GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 151 AADRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDR 210 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++++I LRKK+ AG + I T G GY+++ Sbjct: 211 VWSYDFGGHANVVELYISYLRKKID--AGREPMIHTRRGAGYMIK 253 >gi|71907507|ref|YP_285094.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gi|71847128|gb|AAZ46624.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 229 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 M ILL+EDD LA + L+ Y+ D DG+ L +D +ILD+GL + Sbjct: 1 MHILLVEDDALLADGLARALRHSG---YIVDTANDGLSADSLLANEAYDLVILDIGLPGL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL+ LR + TPV +LS ++E++VR L GADDY+ KP + EL AR+RA++R Sbjct: 58 DGCEVLQRLRTRRQQTPVLVLSARLAVEERVRLLDLGADDYVVKPVTQAELEARVRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G A +V G L ++ K + + L +E+ +E L+ R N ++KE + Sbjct: 118 RRLGEASPEVVLGSLRLDTVGKRAWLNDTALELNAREWAALEFLAGRVNRIVSKEQLIQA 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LY +DE I+ + +LR KL A I TV G GY L + A Sbjct: 178 LYSWQDEITPNAIEKLVSRLRVKLEEAG---ITIRTVRGLGYYLEKPA 222 >gi|166032567|ref|ZP_02235396.1| hypothetical protein DORFOR_02282 [Dorea formicigenerans ATCC 27755] gi|166026924|gb|EDR45681.1| hypothetical protein DORFOR_02282 [Dorea formicigenerans ATCC 27755] Length = 231 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + +L+I+D+ ++ ++ + LK E+ V D G +++ K FD I+LD+ + D GF Sbjct: 4 ISVLIIDDEPSILKAVSMTLKQEHIAVTCADNGALALDILKANTFDLILLDIIMPDQDGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +L+ +R ++ TPV +LSG +V+GL+ GADDYI+KPF+K LV++IRA+VRR Sbjct: 64 SILKVIRSSQNYTPVILLSGRGEDSAQVKGLELGADDYITKPFSKTVLVSKIRAMVRRTN 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S A + + G ++ ++++TV G I LT KE+ ++ L +K+ Sbjct: 124 QYVLSSDEAITEVKKGSFTLRMESQTVLKNGKEISLTSKEFSLLYLFIENPEYIFSKQEL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ D + I V+I KLR KL + +I TVWG+GY Sbjct: 184 FSKVWRS-DNCDDSTILVYIKKLRDKLEDDPSHPTHICTVWGKGY 227 >gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A I+L L+ E + + G +G+ + +++D ++LD+ L ++ G E Sbjct: 5 RILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPELSGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 VLR +R TPV +L+ ++ DKV GL GA+DYI+KPF EEL ARIR +R S Sbjct: 65 VLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPAS 124 Query: 120 RGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A+ T G+L VN + V + I LT KEY ++ + KN L+ E L Sbjct: 125 TSPAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLLT 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + I+ V+I LRKK+ +A YI+TV G GY+L+E Sbjct: 185 NVWGFDYYGDTNIVYVYIRYLRKKI-DAPFSTPYIQTVRGVGYMLKE 230 >gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 269 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ ++ + + L+ E + + G+ ++ + + DA++LD+ L D+ G Sbjct: 43 VRVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGL 102 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 103 TVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 162 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S++V GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 163 AADRRSDSMLVVGDLTLDEDSHEVSRSGENIHLTATEFELLRFLMRNPRRVLSKAQILDR 222 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+K+ AG + I T G GY+++ Sbjct: 223 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 265 >gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 261 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++++ +E LK F V GE+G+ D IILDL L + G E Sbjct: 27 RVLVVDDEQSIVTLLEYNLKQAGFIVLTAYDGEEGLHKALEERPDFIILDLMLPKLDGIE 86 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + LR K+ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR+ Sbjct: 87 VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTVI 146 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + H+ +V G L + D R+ LT KE++++ L+ K LT++ Sbjct: 147 HGQEEKQEHSDDSLVVGQLEIFPDRYEAYFAQKRLELTPKEFELLAYLAKYKGRVLTRDQ 206 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 207 LLSAVWNYDFAGDTRIVDVHISHLRDKIEQDTRKPVYIKTIRGLGYKLEEPKADE 261 >gi|167552258|ref|ZP_02346011.1| DNA-binding response regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323070|gb|EDZ10909.1| DNA-binding response regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 222 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILTAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|225573005|ref|ZP_03781760.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM 10507] gi|225039656|gb|EEG49902.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM 10507] Length = 229 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 130/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ ++ +V GE+ +EL K ++D I+LDL L + G E Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDDMDVDCAYDGEEALELAKANKYDIILLDLMLPKMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIREFS-DVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAHL 122 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A++ + G+L ++ +++ V + I+LT KE+ ++ELL N ++E LN Sbjct: 123 EAKTQEKAKTVQVGELKMDCESRRVFIGDKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ + Y+ T WG GY + Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIESNPSEPKYVHTKWGVGYYFQ 228 >gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family [Chlorobium luteolum DSM 273] Length = 232 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ +A ++ L+ E+F V GE G+EL ++D ++D L + G Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A + PV L+ +++D V GL +GADDY+ KPF EEL+ARIRA +R++ Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L G L ++ + H + LT KE+ ++E L + T+ + H++D Sbjct: 121 PTTGPL-TAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +IDV++ LR+KL AAG I+TV G GYV+R Sbjct: 180 IHFDADTSVIDVYVNFLRRKLE-AAGCTGLIKTVRGVGYVIR 220 >gi|33591407|ref|NP_879051.1| two-component response regulator [Bordetella pertussis Tohama I] gi|33571049|emb|CAE40537.1| two-component response regulator [Bordetella pertussis Tohama I] gi|332380808|gb|AEE65655.1| two-component response regulator [Bordetella pertussis CS] Length = 225 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED+ LA + L ++ V V G +G L +++ +ILD+ L DI GF Sbjct: 1 MCILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDYELVILDVMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR A +TPV +L+ +ED+VRGL+ GADDY+ KPF EL+AR+ A+ RR R Sbjct: 61 AVLAALRAAARNTPVLMLTARDRVEDRVRGLEGGADDYLVKPFAFSELLARVHALQRRGR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ DL ++L ++ + G R+ LT KE+ ++ LL R+ L++ ++D Sbjct: 121 SQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLALLLRRQGQILSRTTLAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +IDV I +LR KL + K + TV G GYVL Sbjct: 181 MNFDSDTNVIDVAIRRLRGKLDDPYDAK-LLHTVRGMGYVL 220 >gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 238 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 132/231 (57%), Gaps = 5/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+IED+ +A S+ + L E V VT G G+++ + E D +ILDL L DI G Sbjct: 10 LHILVIEDEPTIAESLRVGLTYEGMRVTVTTEGRSGLQVSEEQEVDLVILDLMLPDIDGM 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + P+ +L+ ++++V+GLQ GADDYI KPF+ +EL+AR+ A++RR+ Sbjct: 70 VVCRRLRARSSTLPIIMLTARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRRAG 129 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ L+++ + + V + G ++ LT E+ ++EL T+E L+ ++ Sbjct: 130 VSRPSTVLRIAGLTLDTETREVTLNGRQLELTPTEFALLELFMRHPRRVFTRETLLSRVW 189 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + I++V + LR+K+ + + I T++G GY LR +DET Sbjct: 190 GFTYVGDSNIVEVHMSNLREKIGDHE--RKLIRTIYGVGYCLR--PEDETA 236 >gi|254411491|ref|ZP_05025268.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181992|gb|EDX76979.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 362 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 130/236 (55%), Gaps = 7/236 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ LA +I L +N+ V + GE G++ Y +D I+LD+ L + Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR A ++P+ +LS ++ +D V GL +GADDYI KP E L AR+RA++RR+R Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G+L ++ V G + L+ KEY ++ LL +++ + L+ Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 D P + + + LR+KL A G + IETV+G GY L+ + CE L+TA Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVG-DIIETVYGFGYRLK-----DICE-LQTA 229 >gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 224 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 121/221 (54%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA IEL LK E + V V G G+ + D I+LD L I G E+ Sbjct: 5 ILVVEDEAKLAQFIELELKYEGYTVTVAPDGLAGLTAARESHPDLILLDWMLPGISGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ I D+V GL +GADDYI KPF+ EEL+AR+RA +RR++ Sbjct: 65 CKRLRQTGDKVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANLRRTQEE 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 I+ DL +N + V I LT KE++++E L LT++ L ++ Sbjct: 125 NPEEILFNDLRLNRSTREVYRANRLIELTAKEFELLEYLMSHPRQVLTRDQILERVWGYD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL G K I+T+ G GYVLR+ Sbjct: 185 FMGDSNIIEVYVRYLRLKLEE-NGEKRLIQTIRGVGYVLRD 224 >gi|70731211|ref|YP_260952.1| DNA-binding response regulator QseB [Pseudomonas fluorescens Pf-5] gi|68345510|gb|AAY93116.1| DNA-binding response regulator QseB, putative [Pseudomonas fluorescens Pf-5] Length = 220 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+AL I + L +E + + G + + FD ++LDLGL + G Sbjct: 1 MRLLLVEDDRALGQGIRVALSAEGYTLDWLQDGASALHALRTESFDLLLLDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR A+ PV IL+ +++ GL +GADDY+ KPF+ EE AR+RA++RRS+ Sbjct: 61 ELLQQLRAAQQDLPVLILTARDGTAERIAGLDAGADDYLVKPFDVEEFKARVRALLRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ L+ + ++ + V+ Q + + LT EYQ++ L +R +T+E LY Sbjct: 121 GRAQPLLEHAGIRLDPANQQVQYQDNEVVLTPMEYQLLHQLMVRPGKVVTRERLSRALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D E ++V I LRKKL + I TV G GYVL Sbjct: 181 WQDRVESNTLEVLIHNLRKKLCS-----ELIRTVRGVGYVL 216 >gi|49475266|ref|YP_033307.1| two-component system regulatory protein [Bartonella henselae str. Houston-1] gi|49238072|emb|CAF27279.1| Two-component system regulatory protein [Bartonella henselae str. Houston-1] Length = 222 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 127/227 (55%), Gaps = 15/227 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MRIL++EDD+ L + +K+ YV+D GE+ L +DA+ILD+GL + Sbjct: 1 MRILIVEDDRNLNRQLAEAVKNAG---YVSDSAFNGEEAYFLGSTESYDAVILDIGLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G V+ R PV +L+ DKV G+ +GADDY+ KPF+ EEL+AR+RA++R Sbjct: 58 DGICVVEKWRKEGHLMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHLEELMARLRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RS GHA S + G V LD KT V G I LT E++++ L + +++ Sbjct: 118 RSTGHATSTLCCG--KVLLDTKTSRVFFDGQLIKLTSYEFRLLSYLMHHGDRIVSRTELT 175 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 HLYD + + ++VF+ +LRKKL G + IET+ G GY +R Sbjct: 176 EHLYDQDFDKDSNTVEVFVGRLRKKL-----GMDLIETIRGMGYRVR 217 >gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074] gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074] Length = 223 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 127/221 (57%), Gaps = 6/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++ + ++ ML+ E F V + G +G++ + D ++LDL L +PG EV Sbjct: 1 MLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 61 CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ + Sbjct: 119 PEEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ G Y+ TV G GY Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219 >gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 233 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F + + GE+ + + D IILDL L I G++ Sbjct: 6 KILIVDDDNNIAELIALYLTKECFETKIVNDGEEALREFASFRPDLIILDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +LS DKV GL+ GADDY+ KPF+ +ELVAR+RA++RR Sbjct: 66 VCREIRHTS-DVPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVRAVLRRFQV 124 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S ++ + DL+VNL V G ++ + KE +++ L+ N T+E L Sbjct: 125 KQPSPSSSEKCVTYPDLTVNLTNYAVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +H++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDNPHWS--IATVWGIGY 226 >gi|222151313|ref|YP_002560469.1| response regulator ArlR homolog [Macrococcus caseolyticus JCSC5402] gi|222120438|dbj|BAH17773.1| response regulator ArlR homolog [Macrococcus caseolyticus JCSC5402] Length = 223 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 136/223 (60%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ LA IEL L E++ V V GE G++ E+D I+LD+ L + G E Sbjct: 3 RILVVEDEANLARFIELELTHESYAVTVMYDGESGLQEALSTEYDCILLDIMLPKLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR K TPV +++ DKV GL GADDYI KPF+ EEL+AR+RA++RR++ Sbjct: 63 VCRKLRREK-ETPVIMITAKGETYDKVIGLDYGADDYIVKPFDIEELLARLRALLRRNKN 121 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ L+V G+L ++ +A TV I LT E+++++LL++ K +T+E L ++ Sbjct: 122 EDDSEHLLVVGNLQIDKEAFTVLCDHQLIELTKTEFELLKLLAMNKRHVMTREKVLTAIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E E ++DV+I LR KL G IETV G GYV+R Sbjct: 182 GYDNEVETNVVDVYIRYLRNKLK-PFGQDQLIETVRGVGYVIR 223 >gi|182437360|ref|YP_001825079.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777970|ref|ZP_08237235.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178465876|dbj|BAG20396.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658303|gb|EGE43149.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 248 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 127/229 (55%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + L+ E + V G + + + DA++LD+ L D+ G Sbjct: 21 VRVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRAARDFRPDAVVLDVMLPDMDGL 80 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 81 SVLGRLRREYDDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 140 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A+S + GDL ++ D+ V G IH+T E++++ L L+K L Sbjct: 141 SAVAAGRAESTLTVGDLVLDEDSHEVSRGGDAIHVTATEFELLRFLMRNPRRVLSKAQIL 200 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ + +++++I LRKK+ AG I T G GY+++ Sbjct: 201 DRVWNYDFGGQANVVELYISYLRKKID--AGRTPMIHTRRGAGYLIKPG 247 >gi|56540655|gb|AAV92781.1| PmrA [Salmonella enterica] gi|56540657|gb|AAV92782.1| PmrA [Salmonella enterica] Length = 222 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRVRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELTVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|16767542|ref|NP_463157.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161617435|ref|YP_001591400.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167991502|ref|ZP_02572601.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231307|ref|ZP_02656365.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237001|ref|ZP_02662059.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243710|ref|ZP_02668642.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263368|ref|ZP_02685341.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466994|ref|ZP_02700842.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821248|ref|ZP_02833248.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446648|ref|YP_002043542.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451690|ref|YP_002048283.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469502|ref|ZP_03075486.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734993|ref|YP_002117227.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250754|ref|YP_002149207.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262661|ref|ZP_03162735.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245395|ref|YP_002218184.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387181|ref|ZP_03213793.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205355063|ref|YP_002228864.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859446|ref|YP_002246097.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224586057|ref|YP_002639856.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912749|ref|ZP_04656586.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16422853|gb|AAL23116.1| response regulator in two-component regulatory system with BasS [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56540683|gb|AAV92795.1| PmrA [Salmonella enterica subsp. enterica serovar Typhimurium] gi|161366799|gb|ABX70567.1| hypothetical protein SPAB_05292 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405311|gb|ACF65533.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409994|gb|ACF70213.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455866|gb|EDX44705.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710495|gb|ACF89716.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630642|gb|EDX49254.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214457|gb|ACH51854.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240916|gb|EDY23536.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290033|gb|EDY29392.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939911|gb|ACH77244.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604279|gb|EDZ02824.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205274844|emb|CAR39904.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205330124|gb|EDZ16888.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334263|gb|EDZ21027.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337324|gb|EDZ24088.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342091|gb|EDZ28855.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347889|gb|EDZ34520.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206711249|emb|CAR35625.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470585|gb|ACN48415.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249390|emb|CBG27254.1| Two-component response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996618|gb|ACY91503.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160784|emb|CBW20315.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915397|dbj|BAJ39371.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088702|emb|CBY98460.1| Phosphate regulon transcriptional regulatory protein phoB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223164|gb|EFX48234.1| Transcriptional regulatory protein basR/pmrA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|326625984|gb|EGE32329.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630216|gb|EGE36559.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332991107|gb|AEF10090.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 222 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 222 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 3/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD +++ + L+ E + V V+ G +E D I+LDLGL ++ G EV Sbjct: 4 VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R TPV IL+ D V GL +GADDY++KPF EL+AR+RA++R RG Sbjct: 64 ARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR--RGQ 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 +++ +V G + ++ D++ + +HLT KE+ ++ +L +T+E + ++D Sbjct: 122 SETPVVQG-VRIDADSRRAWLGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LR+KL + A YI TV G G+ Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDASKPRYITTVRGVGF 217 >gi|94310569|ref|YP_583779.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354421|gb|ABF08510.1| DNA-binding response regulator in two-component regulatory system [Cupriavidus metallidurans CH34] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ LA S+ L F V G L ++ ILD+G+ + G Sbjct: 1 MRILLAEDNLKLAESLVDSLSQSGFAVDCMHDGASADHLLTTQDYALAILDIGMPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+VRGL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRQRRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFALNELEARARALIRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH ++ + G L + ++ + G + LTG+E ++E+L +R + K ++ Sbjct: 121 GHDRTALECGPLRYDSVSRAFTLHGELLQLTGRERAVLEVLLMRDGRAVNKAALSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL G I T+ G GY+L Sbjct: 181 IDESVNADAIEIYVYRLRKKLE---GSGVSIVTLRGLGYLL 218 >gi|289428055|ref|ZP_06429759.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295131570|ref|YP_003582233.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|289158938|gb|EFD07138.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291377382|gb|ADE01237.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|313763694|gb|EFS35058.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313771712|gb|EFS37678.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793758|gb|EFS41789.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803070|gb|EFS44278.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313808476|gb|EFS46943.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313810535|gb|EFS48249.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313813831|gb|EFS51545.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313816988|gb|EFS54702.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818098|gb|EFS55812.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313820957|gb|EFS58671.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823972|gb|EFS61686.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827091|gb|EFS64805.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313831577|gb|EFS69291.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313839302|gb|EFS77016.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916553|gb|EFS80384.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918787|gb|EFS82618.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314920994|gb|EFS84825.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926984|gb|EFS90815.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314932398|gb|EFS96229.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956707|gb|EFT00959.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959618|gb|EFT03720.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961803|gb|EFT05904.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964787|gb|EFT08887.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314968705|gb|EFT12803.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974927|gb|EFT19022.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977978|gb|EFT22072.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314979631|gb|EFT23725.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314984610|gb|EFT28702.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314988269|gb|EFT32360.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990356|gb|EFT34447.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315079245|gb|EFT51248.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082292|gb|EFT54268.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083737|gb|EFT55713.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315087378|gb|EFT59354.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315089795|gb|EFT61771.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315095569|gb|EFT67545.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315100169|gb|EFT72145.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102492|gb|EFT74468.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|327326542|gb|EGE68330.1| DNA-binding response regulator TrcR [Propionibacterium acnes HL096PA3] gi|327332809|gb|EGE74541.1| DNA-binding response regulator TrcR [Propionibacterium acnes HL096PA2] gi|327447632|gb|EGE94286.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448505|gb|EGE95159.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449638|gb|EGE96292.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327455816|gb|EGF02471.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456090|gb|EGF02745.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327457963|gb|EGF04618.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328757131|gb|EGF70747.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757326|gb|EGF70942.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328757510|gb|EGF71126.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328762085|gb|EGF75590.1| DNA-binding response regulator TrcR [Propionibacterium acnes HL099PA1] gi|332676438|gb|AEE73254.1| putative two-component system response regulator [Propionibacterium acnes 266] Length = 243 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED+ +L + + ++ E ++V + G + + D I+LD+ L+D G Sbjct: 18 IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV+R +R+ + + L+ + ++ GL +G DDY++KPF+ EE++AR+RA++RRS Sbjct: 78 EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSG 137 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S++ GDL+++ D++ V G IHLT E++++ L+K L+ Sbjct: 138 ATEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ G K I T+ G GYVL+ Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHKPMIHTMRGAGYVLK 240 >gi|83746149|ref|ZP_00943203.1| Hypothetical Protein RRSL_04185 [Ralstonia solanacearum UW551] gi|207722048|ref|YP_002252486.1| response regulator protein [Ralstonia solanacearum MolK2] gi|207741838|ref|YP_002258230.1| response regulator transcription regulator protein [Ralstonia solanacearum IPO1609] gi|300702429|ref|YP_003744029.1| transcriptional regulatory protein [Ralstonia solanacearum CFBP2957] gi|83727115|gb|EAP74239.1| Hypothetical Protein RRSL_04185 [Ralstonia solanacearum UW551] gi|206587222|emb|CAQ17806.1| response regulator protein [Ralstonia solanacearum MolK2] gi|206593222|emb|CAQ60149.1| response regulator transcription regulator protein [Ralstonia solanacearum IPO1609] gi|299070090|emb|CBJ41377.1| Transcriptional regulatory protein [Ralstonia solanacearum CFBP2957] Length = 221 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 12/225 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LLIEDD + +E L+ + V +V D G+ I++ +D ++LDLGL G Sbjct: 1 MRVLLIEDDPMIGAVVEAALRDAAYAVDWVRD-GQTAIDVSGHQHYDVLLLDLGLPGQDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR LR PV IL+ +++++VRGL GADDY+ KPF EL+AR+RA++RR Sbjct: 60 HAVLRTLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKPFEMVELLARMRAVLRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A ++ G LS LD T EV+ G + L+G+E+ +++ L LR L++ Sbjct: 120 GGAASPVLSNGMLS--LDPATHEVRVGDGEAVRLSGREFALLQTLMLRPGAILSRSELEE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y E ++ I LRKKL G I+ V G G+++ Sbjct: 178 RIYGWGHEVASNAVEFLIHALRKKL-----GAESIKNVRGVGWMV 217 >gi|268609051|ref|ZP_06142778.1| response regulator receiver protein [Ruminococcus flavefaciens FD-1] Length = 225 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA ++ +LK ++V G DG++ +D IILD+ L + G Sbjct: 1 MRLLVVEDEVQLADALSEILKRNMYSVDTVYDGVDGLDNALTGVYDCIILDIMLPGMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR I+TPV +L+ S +EDK+ GL GADDY++KPF EL+AR+RA+ RR + Sbjct: 61 EVLRNLRQEHINTPVLLLTARSEVEDKINGLDCGADDYLTKPFITGELLARVRALTRR-K 119 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +S + L++N D +V +G + L+ KEYQ++ELL L KE + + Sbjct: 120 GEIVDESNLDFNGLTLNKDTCSVIWKGSDVKLSLKEYQIMELLISNPRRILPKERIIEKI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + E I+V+I LRKKL++ + I+T G GY L + Sbjct: 180 WGYESDVEYNNIEVYISFLRKKLASISAPVQ-IKTARGIGYSLEQ 223 >gi|163856366|ref|YP_001630664.1| two-component response regulatory protein [Bordetella petrii DSM 12804] gi|163260094|emb|CAP42395.1| two-component response regulatory protein [Bordetella petrii] Length = 229 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 122/233 (52%), Gaps = 6/233 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLSRSLRHNGYAVDAVRDGAAADSALAAQAFDLLILDLGLPQLAGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR PV IL+ S+E +V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +L+ G L + + V + L+ +E ++E+L R ++K ++HL + Sbjct: 121 GGGATLLRHGRLVFDQTGRVALVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233 +E I+V++ +LRKKL +G K I TV G GY L +D+ YL Sbjct: 181 WGEEVSTNAIEVYVHRLRKKL-EPSGVK--IITVRGLGYCLE---RDQGAGYL 227 >gi|120405713|ref|YP_955542.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958531|gb|ABM15536.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D+ + ++ + L + V+ G + + + ++ D ++LDLGL D+ G E Sbjct: 7 RVLVIDDEPQILRALRINLSVRGYEVHTAASGAEALRMAADHKPDVVVLDLGLPDMTGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR +S PV +LS S DKV L +GADDY++KPF +E +AR+RA VRR Sbjct: 67 VLAGLR-GWLSAPVIVLSARSDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRRGAT 125 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ +I T +V+L AK V G +HLT E+ M+E+L + + +E L + Sbjct: 126 AAETDEPVIETSSFTVDLAAKKVTKGGVEVHLTPTEWGMLEMLVRHRGKLVGREELLKEV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + V++ +LR+KL + ++ T G GY ++ Sbjct: 186 WGPAYAKETHYLRVYLAQLRRKLEDDPSHPVHLLTEAGMGYRFQQ 230 >gi|126463834|ref|YP_001044947.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|126105645|gb|ABN78175.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] Length = 220 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA +++ L+ F ED F+A++LDL L D G Sbjct: 1 MRILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR A+ PV +L+ ++D+VRGL GADDY+ KPF EEL AR+RA+ RR Sbjct: 61 ELLAELRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + ++++L A G + L+ +E+ ++ L L+K LY Sbjct: 121 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++E E I+V + KLR KL G +IETV G GY L E Sbjct: 181 WQEEIESNAIEVHVHKLRAKL-----GHGFIETVRGVGYRLAE 218 >gi|167760380|ref|ZP_02432507.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704] gi|167662053|gb|EDS06183.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704] Length = 231 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 129/231 (55%), Gaps = 16/231 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRILL+EDD+ ++ +E L E F V DG+E C+ +E FD ++LDL + + Sbjct: 1 MRILLVEDDREISEMLEEFLIQEAFEVVP---AFDGLEACEKFEDGEFDLVLLDLMIPKM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +V++ +R K P+ I+S S+ DK GL+ GADDYI+KPF E++ARI+A +R Sbjct: 58 SGMDVMKTIR-EKSVVPILIVSAKDSLLDKSLGLELGADDYITKPFVMAEVLARIKANLR 116 Query: 118 RSRGHA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 R+ +A + + GD+ +N TV +G +I LT KE++++ LL Sbjct: 117 RTNQYAAGSSRKQEEPATLSCGDIQLNPADFTVRKRGKKIDLTAKEFEILRLLMQNPKKV 176 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 TKE + +++ + ++V I +LR K+ + A YI TVWG GY Sbjct: 177 YTKEQIYSLVWEDAYLGDENAVNVHISRLRNKIEDDARNPEYIITVWGFGY 227 >gi|229589098|ref|YP_002871217.1| heavy metal two component system, response regulator [Pseudomonas fluorescens SBW25] gi|229360964|emb|CAY47824.1| heavy metal two component system, response regulator [Pseudomonas fluorescens SBW25] Length = 226 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED + L F + G G L +D +ILD+ L G+ Sbjct: 1 MKLLIVEDQPKTGQYLRQGLTEAGFTTELVADGTSGQHLALTGAYDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A+R A + PV L+ ++ED+V GL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 QILQAVRTAGLDIPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + + DL ++L + VE G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 STPQETALQLADLRLDLIRRRVERDGQRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + II+V I +LR K+ + K I TV G GYVL E Sbjct: 181 DMNFDSDTNIIEVAIRRLRLKVDDNFPNK-LIHTVRGMGYVLEE 223 >gi|307326237|ref|ZP_07605434.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306888180|gb|EFN19169.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 130/222 (58%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LAH++ L +E ++V + G G+ + + E+ ++LDL L + G+ Sbjct: 1 MRILVVEDEVDLAHTLHTGLTAEGYSVDLAHDGRHGLWMARTGEYALVVLDLMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR +TP+ +L+ D+ L +GADDY++KPF+ LVAR+RA+VRR+ Sbjct: 61 KVCAQLRREGNATPILVLTAKDGDWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 A ++ GDLS+++ + G R+ LT +E+ ++ELL+ R ++K L H + Sbjct: 121 TVAPPVLAVGDLSLDVAGRVCRRAGARVELTPREFAVLELLARRAGQAVSKTDLLYHAWP 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P +++ + LRKK+ + A + ++TV G GY L Sbjct: 181 DEAQDP--NLVEARVSALRKKV-DTAFHRQSLQTVRGTGYRL 219 >gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 247 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L+ + + L+ E + V G + + + DA++LD+ L D+ G Sbjct: 22 VRVLVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDIMLPDMDGL 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 82 AVLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 141 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A +SL+ GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 142 TAAVRSESLLAVGDLTLDEDSHEVTRGGQSIHLTATEFELLRYLMRNPRRVLSKAQILDR 201 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++++I LR+K+ AG I T G GY+++ Sbjct: 202 VWSYDFGGQANVVELYISYLRRKID--AGRPPMIHTRRGAGYLIKPG 246 >gi|163749892|ref|ZP_02157137.1| DNA-binding response regulator [Shewanella benthica KT99] gi|161330406|gb|EDQ01385.1| DNA-binding response regulator [Shewanella benthica KT99] Length = 225 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 127/228 (55%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ILL+EDD +IE ++K + N+ G G+ L +D +ILD L + Sbjct: 1 MKILLVEDDTT---TIEYVVKGFIEQGHNIETASDGHQGLLLATSMNYDLVILDRMLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R +++ Sbjct: 58 DGLKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117 Query: 118 RSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R A++ + G+L + L + V + G + L KE+Q+++ L N +++ + Sbjct: 118 RGLSQPAETELSVGNLVMELLTRKVTLDGSELMLQPKEFQLLKYLMEHPNQVVSRTLLFE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P +IDV I KLR+K G+ IETV G GY LRE Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGFGE-LIETVRGAGYRLREG 224 >gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 235 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G E Sbjct: 4 QILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPRLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR I TP+ ++S S DKV L+ GADDY++KPF+ ELVAR++AI+RR+ Sbjct: 64 VCKRLRAKAIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRTSK 123 Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q V G L+V D V H + LT KE++++ L N TLT+E Sbjct: 124 EQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR K+ + +I+T+ G GY +E Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKE 234 >gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197712366|gb|EDY56400.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 269 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 130/229 (56%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ ++ + + L+ E + + G ++ + + DA++LD+ L D+ G Sbjct: 43 VRVLVVDDELSITELLSMALRYEGWQIRSAGDGTGAVQTAREFRPDAVVLDMMLPDMDGL 102 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 103 AVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 162 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S++V GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 163 AADRRSDSVLVVGDLTLDEDSHEVSRAGENIHLTATEFELLRFLMRNPRRVLSKAQILDR 222 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + +++++I LR+K+ AG + I T G GY+++ A Sbjct: 223 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIKPAAS 269 >gi|323132633|gb|ADX20063.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 228 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 7 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 59 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 60 LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 119 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 120 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 180 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 222 >gi|255505684|ref|ZP_05347547.3| DNA-binding response regulator DltR [Bryantella formatexigens DSM 14469] gi|255266531|gb|EET59736.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM 14469] Length = 248 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 121/229 (52%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED+ L ++ LK E + G G+EL +D I+LDL L + G+ Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR K + V ILS S +EDK+ GL GADDY++KPF +EL ARIRA+ RR Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 121 GHAQSLIVTGDLSVNLDAKTV--EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +V DL +N+ T+ H + L KE+Q++E L +++ + Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + E E +DV+I LRKKL + G I V G GY L+E D Sbjct: 200 WGYDSEVEYNNVDVYISFLRKKLKH-TGAHVEIRAVRGIGYTLQEAGAD 247 >gi|18450333|ref|NP_569204.1| hypothetical protein pli0051 [Listeria innocua Clip11262] gi|16415834|emb|CAC42049.1| pli0051 [Listeria innocua Clip11262] Length = 240 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 128/236 (54%), Gaps = 10/236 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDKA+ I L++ N+N Y D G + + D IILDLGL D+ G + Sbjct: 7 ILVVEDDKAIRKLITTTLETRNYNFYTADTGNAALIQVTSRQPDIIILDLGLPDMDGTTI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ +R P+ ++S S DK+ L GADD+++KPF+ EEL+ARIR +RR Sbjct: 67 IQRVREWS-QVPIIVVSARSEDSDKIVALDMGADDFLTKPFSVEELLARIRVSLRRRAYT 125 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S Q++ + GDL +N + V + IHLT EY+++ LL+ LT ++ H Sbjct: 126 NSELSTQNVFINGDLKINYTLRAVYLAEIEIHLTPIEYKLVSLLAKNVGRVLTHN-YITH 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL---RENAKDETC 230 G ++ + VF+ LRKK+ + + YI+T G GY + +N ++ET Sbjct: 185 QIWGDYSNDIPALRVFMANLRKKIEKKSAQQRYIQTHVGIGYRMLQVSDNKENETI 240 >gi|294634562|ref|ZP_06713097.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685] gi|291092076|gb|EFE24637.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685] Length = 285 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ + I+ L F + G G+ +DA+ILDL L I G Sbjct: 67 MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLPGIDGL 126 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R A + PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR+ Sbjct: 127 EILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNH 186 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+ + G ++++ + T + G + L KE+ ++ELL L + + LY+ Sbjct: 187 GQTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLYN 246 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V I LR+KL +A +I TV G GY L Sbjct: 247 WEGDVSSNAVEVHIHHLRRKLGSA-----FIRTVHGVGYTL 282 >gi|260889876|ref|ZP_05901139.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254] gi|260860482|gb|EEX74982.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254] Length = 227 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+K L I L E + V G+D ++ E+DAI+ D+ L I GF Sbjct: 1 MRILVIEDEKNLNDIIVKKLVLEKYCVDSCLNGKDALDYIFSVEYDAIVSDIMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+LR +R I TPV +L+ IED+V+GL GADDY+ KPF +EL+AR+R ++RR Sbjct: 61 EILRRIREKGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARVRVLLRRNP 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +A ++ +L+VN ++ V I L+ +E+ ++E + K L++E Sbjct: 121 STNNSNASNIFSIANLTVNCNSHDVFRDKTPIKLSTREFTILEYMIRNKERVLSREQIEQ 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 H+++ E +IDV+I LR+K+ K I T+ G GYVL+ Sbjct: 181 HIWNYDYEGGTNVIDVYIRYLRRKIDKDFEPK-LIHTIRGVGYVLK 225 >gi|152973211|ref|YP_001338357.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892871|ref|YP_002917605.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae NTUH-K2044] gi|150958060|gb|ABR80090.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545187|dbj|BAH61538.1| copper resistance two-component system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 227 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLSV+L ++ V RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 221 >gi|188997385|ref|YP_001931636.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188932452|gb|ACD67082.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 219 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 126/222 (56%), Gaps = 9/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 M+ILL+ED+ L ++I +L+ N YV D DG E F E +D IILDL L DI Sbjct: 1 MKILLVEDNLDLNNTIREVLE---LNGYVVDSAFDGKEALNFIENSSYDVIILDLMLPDI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL+ +R I TPV IL+ + +DK+ GL GADDYI+KPF+ +EL+ARIRAI R Sbjct: 58 DGLEVLKTIRNKGIDTPVIILTAKNQTKDKITGLDLGADDYITKPFDVDELLARIRAIGR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + +++ +L ++L K V+ G + LT K Y ++E L + ++ E L+ Sbjct: 118 RVSAEKKDIVLIDNLEIDLKNKVVKKSGKFVELTPKLYCILEQLVRNRGKIVSYETLLSK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + P + + I LRK + K I+T+ G GY Sbjct: 178 CWEITEVPSRETMRANIKNLRKLID---PDKKIIKTIEGVGY 216 >gi|162147251|ref|YP_001601712.1| two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785828|emb|CAP55399.1| Two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 M IL++EDD + + + L+ V D G+DG+ L FD IILD L I G Sbjct: 1 MHILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L +R STPV +LS ++ ++D+V+GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 LRLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRG 120 Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R L + DL ++L +++ G RI L +E++++E L +T+ M L Sbjct: 121 RSDNAPLTRLNVADLEIDLLSRSSAAAGSRIDLQPREFRLLEYLMRNAGQVVTRTMLLEG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D +P+ +IDV + +LR+K+ I T+ GY+LR Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPFDTP-LIHTIRNAGYMLR 224 >gi|332561089|ref|ZP_08415407.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|332274887|gb|EGJ20203.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 220 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA +++ L+ F ED F+A++LDL L D G Sbjct: 1 MRILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR A+ PV +L+ ++D+VRGL GADDY+ KPF EEL AR+RA+ RR Sbjct: 61 ELLAKLRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + ++++L A G + L+ +E+ ++ L L+K LY Sbjct: 121 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++E E I+V + KLR KL G +IETV G GY L E Sbjct: 181 WQEEIESNAIEVHVHKLRAKL-----GHGFIETVRGVGYRLAE 218 >gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 229 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 133/228 (58%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K +A ++L + E + V VT G G++ ++D ++LD+ L I GFE Sbjct: 4 KILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIMLPGIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R PV +L+ ++DKV GL GADDY++KPF+ EEL AR+RA +R+ + Sbjct: 64 VLKKIR-EHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 122 Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + ++ D+ ++L V G +I LT KE+ ++E L N LT+E L ++ Sbjct: 123 HLKKDVLKYSDIIMDLTTHEVRRAGIKIELTKKEFDLLEYLIKNANIALTREKILEGVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + I+DV+I LR K+ + K I T+ G GY L+E+ KDE Sbjct: 183 YDYYGDTNIVDVYIRYLRSKIDDPFDRK-LIHTIRGVGYTLKED-KDE 228 >gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 233 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 129/226 (57%), Gaps = 10/226 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K + + L+ + V GE+ I L K E+D ++LD+ L G+EV Sbjct: 4 VLVVDDEKLIVKGMRFSLEQDGMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKYDGYEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R P+ +L+ + DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 CQAIREFS-EMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNSKK 122 Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++ GDL ++ D++ V + I+LT KE+ ++ELL+ ++E L Sbjct: 123 NKRDSQDDSQVVIAGDLKLDRDSRRVFIAEKEINLTAKEFDLLELLTCNPGKVYSREQLL 182 Query: 176 NHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + D +V+ +DV + +LR+K+ + Y+ T WG GY Sbjct: 183 TYVWGNKAMDTGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGY 228 >gi|291615861|ref|YP_003518603.1| QseB [Pantoea ananatis LMG 20103] gi|291150891|gb|ADD75475.1| QseB [Pantoea ananatis LMG 20103] Length = 228 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 11/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MR+LL+EDD+ + +++ L++ ++V D DG+ + + ++LDLGL Sbjct: 10 MRVLLVEDDEMIGANLQQALEAAGWSV---DWVRDGVYAQNAWSEGGYSCVLLDLGLPRD 66 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLR R +TPV IL+ ++ +V+GL GADDY+ KPF+ +E++AR+RAI R Sbjct: 67 DGLQVLRRARGRGDATPVLILTARDTVAQRVQGLDYGADDYLLKPFDLQEVMARMRAITR 126 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G A S++ +GD+ +++ + V +G R LT +EY ++ L R L++E N Sbjct: 127 RHHGSADSVLGSGDVQLDMLTREVLYKGQREQLTAREYALLYALLERPGAILSREQLENR 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +Y +E +DV I +R+KL N + I V G G+ Sbjct: 187 IYGWGEEVSSNAVDVLIHGMRRKLDN-----DVIRNVRGLGW 223 >gi|290955694|ref|YP_003486876.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260645220|emb|CBG68306.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 229 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++DD +A + + + E + GE+ + + D ++LDL L + GF Sbjct: 4 VRLLVVDDDPPIADLVATVARYEGWEAVTAHSGEEALRQAAAFRPDIVVLDLMLPGVDGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + PV L+ + D+V GL G DDY+ KPF EEL+AR+R ++RRS Sbjct: 64 GVLDRLRQSGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 123 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G A +S++ DLS++ D + V + LT EY+++ L + T LTK L+H+ Sbjct: 124 GPAFQRSVLHVADLSMDEDTREVRRGDKLLTLTPTEYEVLRYLMRKSPTVLTKAQILDHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++++ + +LR+KL + G+ I TV G GYVLR+ Sbjct: 184 WEYGFGGRSNVVELVVSRLRRKLDDT--GEPLIHTVRGFGYVLRQ 226 >gi|284031439|ref|YP_003381370.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810732|gb|ADB32571.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 236 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ LA +I L+ F V + GE G+ + ++DAI+LDL L + G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A TP+ IL+ E + GL GADDY+ KPF+ + L+AR+ A++RR+ Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +V GDL ++ +TV I LT +E+ ++E L +T +K L+H++ Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E +++V++ LR+K+ G I TV G GY++ Sbjct: 181 ADFDREPNVVEVYVGYLRRKIDQPF-GTGSIRTVRGHGYLM 220 >gi|199596926|ref|ZP_03210359.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258507695|ref|YP_003170446.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|199592059|gb|EDZ00133.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257147622|emb|CAR86595.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|259649042|dbj|BAI41204.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 231 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 134/225 (59%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+IEDD L SI ++ +F+ L G DG+ L + FDAI+LD+ L ++ GF Sbjct: 6 KILVIEDDPDLNESIVDFIR--DFSQPEAALTGADGLYLAEEGIFDAIVLDIMLPELNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR ++ TPV IL+ ++ DKVRG + G DDY++KPF++EEL+ R++A+++R+ Sbjct: 64 DLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRT- 122 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GH + + G V+L+ V + + L GKE+ ++ L + T +TK+ + L Sbjct: 123 GHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V +++V++ LRKKL +I+T+ GY+ +E Sbjct: 183 WGFDSDTAVSVVEVYMSNLRKKLK-PMQADVWIKTIRNVGYIFQE 226 >gi|53716964|ref|YP_105798.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|67639655|ref|ZP_00438496.1| transcriptional regulatory protein RstA [Burkholderia mallei GB8 horse 4] gi|124382030|ref|YP_001023922.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126447802|ref|YP_001078701.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|166999292|ref|ZP_02265133.1| transcriptional regulatory protein RstA [Burkholderia mallei PRL-20] gi|254179197|ref|ZP_04885849.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254200613|ref|ZP_04906978.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254204635|ref|ZP_04910988.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254356571|ref|ZP_04972846.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|52422934|gb|AAU46504.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|124290050|gb|ABM99319.1| transcriptional regulatory protein RstA [Burkholderia mallei NCTC 10229] gi|126240656|gb|ABO03768.1| transcriptional regulatory protein RstA [Burkholderia mallei NCTC 10247] gi|147748225|gb|EDK55300.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147754221|gb|EDK61285.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148025598|gb|EDK83721.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|160694524|gb|EDP84534.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|238520240|gb|EEP83702.1| transcriptional regulatory protein RstA [Burkholderia mallei GB8 horse 4] gi|243064600|gb|EES46786.1| transcriptional regulatory protein RstA [Burkholderia mallei PRL-20] Length = 240 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 132/237 (55%), Gaps = 15/237 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD LA I L S F+V V G+ + + ++ +ILDL L + G E Sbjct: 9 RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVRAVREHQPALVILDLMLPHLDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R A + PV IL+ S + D+V GL++ ADDY++KP LVAR RA++RR + Sbjct: 69 VYRRIR-AFSNVPVLILTARSDVYDQVAGLETDADDYVTKPIEPRVLVARARALLRRVQP 127 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A +V G+L+++ +TV +G + L E+ ++ +L+ T L+++ L Sbjct: 128 GASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 187 Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L +DG D + +D I KLR++ +A+ + I+T+WGRGY+ +A D+ Sbjct: 188 KQLRGIEFDGID----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240 >gi|148272229|ref|YP_001221790.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830159|emb|CAN01088.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 226 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59 RIL+++DD ALA I ++L++E F G+ G L F++ D ++LDL L + G Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGFEPSFC--GDGGQALAAFHDAKPDLVLLDLMLPGLDG 61 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V +R A+ P+ +L+ S D V+GL+SGADDYI KPFN +ELVARIR +R + Sbjct: 62 IQVCDLIR-AESGVPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L+ GDL V+++ V RI+LT E+ ++ L+ R T+EM L ++ Sbjct: 121 AAASPGLLQVGDLVVDVEGHEVRRGEERINLTPLEFDLLHALASRPQQVFTREMLLEQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + ++++V + +LR K+ + + TV G GY Sbjct: 181 GYQYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGY 220 >gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 224 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 120/221 (54%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA IEL LK E + V V G G+ + D I+LD L I G E+ Sbjct: 5 ILVVEDEGKLAQFIELELKYEGYQVTVAPDGLSGLTTARESNPDLILLDWMLPGISGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ I D+V GL +GADDYI KPF+ EEL+AR+RA +RR+ + Sbjct: 65 CKRLRQTGNKVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANLRRTSEN 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + DL +N ++ V I LT KE+ ++E L LT+E L ++ Sbjct: 125 NADEVQFMDLRLNRSSREVYRANRLIELTAKEFDLLEYLMSHPRQVLTREQILERVWGYD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL N K I+TV G GYVLRE Sbjct: 185 FMGDSNIIEVYVRYLRLKLENNQ-EKRLIQTVRGIGYVLRE 224 >gi|325568393|ref|ZP_08144760.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325158162|gb|EGC70315.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 224 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 130/233 (55%), Gaps = 23/233 (9%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGE-----DGIELCKFYE-----FDAIIL 50 +++L+IEDDK L SEN V+++GE DG E YE +D IIL Sbjct: 2 IKLLVIEDDKTL---------SENMKEIVSEIGEVTQAYDGSE--GLYEAETGIYDLIIL 50 Query: 51 DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110 DL + ++ G+EVL ALR + TPV IL+ +EDKV G Q GADDY++KPF +EEL+ Sbjct: 51 DLMMPEMNGYEVLSALRKKGLQTPVLILTAKDGLEDKVTGFQKGADDYLTKPFYREELLM 110 Query: 111 RIRAIVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RI+A+++RS G ++ + L NL V QG + + GKE++++ +N L Sbjct: 111 RIKALLKRSLGLFNENTLEYNGLLCNLGTNEVSYQGELLPIQGKEFELLLYFLQNRNIIL 170 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 TKE + ++ E + +++V++ LRK L K I T+ GY+++ Sbjct: 171 TKEQIFDRIWGFDSETTLTVVEVYMSNLRKHLRQTGIDKE-IRTLRNVGYIMQ 222 >gi|255034386|ref|YP_003085007.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254947142|gb|ACT91842.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 231 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD +A +I +L+SENFN + G G ++ +D ++LD+ L + GF+V Sbjct: 7 VLIIEDDLRIAQNIYRVLQSENFNADIARDGLTGKKMALDGRYDLVLLDINLPGMNGFDV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R + K PV +L+ IEDKV GL +GA DYI KPF+ ELVARI A +R S Sbjct: 67 CRHIGEFKPLLPVIMLTAYGEIEDKVEGLGNGATDYIVKPFDSRELVARIHAALRLSDAG 126 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ DL +N+D K V G I LT KE+ ++E L T ++K + ++ Sbjct: 127 RLDAGNRVLGIADLQLNVDTKVVTRAGKFIGLTAKEFALLEYFLLNPGTVISKMDLVKNI 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +P ++V+I LRKK+ K I+T G GY+L EN Sbjct: 187 WHLNFDPGTNFVEVYINYLRKKIDKGFDVK-LIQTRPGLGYILMEN 231 >gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 227 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA IEL L+ E + V V G G+ + + D +ILD L + G E+ Sbjct: 5 ILVVEDEAKLAKFIELELQYEGYQVSVAPDGFAGLATARESQPDLLILDWMLPGVSGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +L+ + D+V GL +GADDY+ KPF+ EEL+AR+RA +RR++ Sbjct: 65 CRRLRSTGDKVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHLRRNQEE 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + DLS+N + V I LT KE+ +++ L LT++ L ++ Sbjct: 125 DPDTLQFADLSLNHSTREVYRGDRLIELTAKEFDLLDYLISHPRQVLTRDQILERVWGYD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + II+V++ LR KL A G K ++TV G GYVLRE++ Sbjct: 185 FMGDSNIIEVYVRYLRLKL-EANGEKRLVQTVRGVGYVLRESS 226 >gi|317054450|ref|YP_004118475.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] gi|316952445|gb|ADU71919.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 234 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/234 (37%), Positives = 131/234 (55%), Gaps = 6/234 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED A I L+ +F V V G DG+ L +E+D ILD+ L I G+ Sbjct: 1 MRLLLVEDQTTAADYIAKGLRENDFVVDVAANGVDGLHLLLTHEYDLAILDVMLPGINGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 ++L R A TPV L+ +ED+VRGL+ GA+DY+ KPF+ EL+AR R I+RR + Sbjct: 61 KLLEMARQADRKTPVMFLTARDDVEDRVRGLELGAEDYLIKPFSFSELLARTRVILRRQT 120 Query: 120 RGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+ +S + GDL ++ V G+RI LT KE+ ++ LL R L++ + Sbjct: 121 PGNVTVSDESQLQIGDLLLDFVKHKVTRAGNRIDLTQKEFLLLSLLMRRSGEVLSRTVIA 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++D +PE +IDV I +LR K+ + K + T+ G GYVL E +T Sbjct: 181 EQVWDMNFDPETNVIDVAIRRLRSKIDDNYEMK-LLHTIRGAGYVLEEKEHADT 233 >gi|217962570|ref|YP_002341142.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222098539|ref|YP_002532597.1| response regulator [Bacillus cereus Q1] gi|217067771|gb|ACJ82021.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221242598|gb|ACM15308.1| response regulator [Bacillus cereus Q1] Length = 225 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 132/225 (58%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I LK E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLKEEGHFILKLHNENEGLNIAYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRKIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNC 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+ I DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 225 >gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 236 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 137/236 (58%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F+V + G+ G EL + D I+LDL L ++ G Sbjct: 2 VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEKPDLIVLDLMLPEMDGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 62 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 GHAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A+S+ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 122 GKAESIEEKTEDMEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 236 >gi|28378254|ref|NP_785146.1| response regulator [Lactobacillus plantarum WCFS1] gi|254556461|ref|YP_003062878.1| response regulator [Lactobacillus plantarum JDM1] gi|308180403|ref|YP_003924531.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271089|emb|CAD63994.1| response regulator [Lactobacillus plantarum WCFS1] gi|254045388|gb|ACT62181.1| response regulator [Lactobacillus plantarum JDM1] gi|308045894|gb|ADN98437.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 228 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 135/227 (59%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K LA +EL LK E +++ V G G++ +FDAI+LDL L ++ G E Sbjct: 3 RILIIEDEKNLARFVELELKHEGYDIQVEYNGRKGLDAALAEDFDAILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115 V R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA + Sbjct: 63 VCRRVREVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDL 121 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ + DL++ + V+ I+LT +EY+++ L N L +++ L Sbjct: 122 ESEQQSTKQTTVTYKDLTIEKENLVVKRGDEVINLTKREYELLLTLMENINVVLARDVLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ E E ++DV+I LR K+ + G K+YI+TV G GYV+R Sbjct: 182 NKVWGYESEVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227 >gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20] gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 229 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ LA I L LK E + V G G++ +D I+LDL L ++ G E Sbjct: 3 KVLIVEDEENLAKFIGLELKHEGYEVETVLDGRSGLDSALENNYDVILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR +K TP+ +++ S+ D+V GL GADDY+ KPF EEL+ARIR+++RR Sbjct: 63 VARRLRESK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +++I DL + + + I+LT +EY ++ L N ++E L Sbjct: 122 ETESSDKHRAIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + +YI+TV G GYV+R Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228 >gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 235 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 130/230 (56%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G+ G++L +FD IILD+ L + G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYQVVSAVDGKMGVDLALSEDFDFIILDVMLPQMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 + + LR KI TP+ +L+ D++ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLEP 122 Query: 120 RGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 RG A ++ GD+ +L V V+G +I LT KE++++ RK + ++ Sbjct: 123 RGTADLSDQPAEMLQIGDILADLTNYQVSVKGEKIFLTPKEFELLIYFMKRKGRVIDRDT 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LN +++ + + +I+DV I LR+KL Y+ TV G GY +E Sbjct: 183 LLNRIWNFDFDGQSRIVDVHISHLREKLERDPKHPEYLVTVRGFGYKFQE 232 >gi|225376457|ref|ZP_03753678.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM 16841] gi|225211833|gb|EEG94187.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM 16841] Length = 233 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F+ + + GE+ + + Y + I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALTAFEQYNPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK + P+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREVR-AKANVPIIMLSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQP 124 Query: 122 HAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ DL +NL +V G + + KE +++ L+ N T+E Sbjct: 125 VKTEEVIPDLKCVKYEDLVINLSNYSVIYMGQAVDMPPKELELLYFLASSPNQVFTREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+H++ + + +DV + +LR+K+ + A + TVWG GY Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDHANWS--LATVWGIGY 227 >gi|332702286|ref|ZP_08422374.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] gi|332552435|gb|EGJ49479.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] Length = 225 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 133/225 (59%), Gaps = 4/225 (1%) Query: 1 MRILLIEDD-KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+IEDD +A ++ ++ + +S + + D G+DG+ + +DA+++D L + G Sbjct: 1 MRILVIEDDLEAASYMLKGLRESGHVVEHAAD-GKDGLYMAAAGSYDAMVVDRMLPGVDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ LR +TPV LS M ++D+VRGL++G DDY++KP+ EL+AR+ A+ RR+ Sbjct: 60 LTIVKTLRSTGNATPVLFLSAMGEVDDRVRGLKAGGDDYLTKPYAFAELLARLEALDRRA 119 Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ DL ++L ++V G I L KE+ ++E L +T+ M L ++ Sbjct: 120 GAVTGGTMLKVADLEMDLVGRSVRRAGRSIELQPKEFALLEYLMRHAGQVVTRTMLLENV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D +P+ +IDV I +LR+K+ + + TV G GY LR+ Sbjct: 180 WDYSFDPQTNVIDVHISRLRQKIDKDF-DRPLLHTVRGSGYSLRD 223 >gi|221369433|ref|YP_002520529.1| Transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] gi|221162485|gb|ACM03456.1| Transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] Length = 221 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA +++ L+ F ED F+A++LDL L D G Sbjct: 2 MRILIVEDDPVLADGLQVGLRLAGFGPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR A+ + PV +L+ ++D+VRGL GADDY+ KPF EEL AR+RA+ RR Sbjct: 62 DLLAELRAAREAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++++L A G + L+ +E+ ++ L L+K LY Sbjct: 122 ALATPRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++E E I+V + KLR KL G +IETV G GY L E Sbjct: 182 WQEEIESNAIEVHVHKLRAKL-----GHGFIETVRGVGYRLAE 219 >gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149] gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149] Length = 233 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 11/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GED + + Y+ + ++LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLMKECFDTKIVSNGEDALSAFETYQPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR AK P+ +LS + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + Sbjct: 66 VCRELR-AKSQVPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + L++NL +V G + + KE +++ L+ N T+E Sbjct: 125 VKPEAPAAEKVKCVEYDGLTINLTNYSVLCDGQNVDMPPKELELLYFLAASPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR+K+ + G + TVWG GY Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREKIKDHPGWG--LSTVWGIGY 228 >gi|114561499|ref|YP_749012.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114332792|gb|ABI70174.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 228 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLI+DD L+ + +L+ E F + GE G+ + + +FD I+LD+ L + GFE Sbjct: 3 RILLIDDDIGLSDLLSQLLELEGFVLTQAYDGEQGLMMAQQQDFDLILLDVMLPKLNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLRALR K TP+ +L+ D+V GL+ GADDY+ KPFN ELVARIRAI+RR++ Sbjct: 63 VLRALRQRK-QTPILMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILRRAQT 121 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A ++ GDL ++ + I LTG E+ ++ L + +TKE Sbjct: 122 TQQDSQANEMMQFGDLRLDPTRQETYCNEQLIILTGTEFSLLFHLIEKSGELVTKESLSE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 ++ + P + +D+ + LRKKL G+ ++T+ G+GY+ Sbjct: 182 NVLGKKLMPFDRSLDMHLSNLRKKLPERQDGRPRVKTLRGKGYI 225 >gi|293393164|ref|ZP_06637479.1| two component response regulator [Serratia odorifera DSM 4582] gi|291424310|gb|EFE97524.1| two component response regulator [Serratia odorifera DSM 4582] Length = 220 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ L + + L SE + + L ++ +ILDLGL D+ G Sbjct: 1 MKLLIVEDDELLLQGLAMALASEGYACDSALNAAEANALIVSSQYSMVILDLGLPDLDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R I PV IL+ ++ED+V GL +GADDY+ KPF EL AR+RA++RR + Sbjct: 61 SLLRQWRRQHIDLPVLILTARDALEDRVDGLDAGADDYLVKPFALVELKARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ DL++NL ++ V VQ + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GHSDNLLQLDDLTLNLSSQQVYVQQQPVDVTPKEFAILSRLMMRAGQTVNRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V + LR+KL GK+ I TV G GY L Sbjct: 181 WNDDLGSNTLEVHVHNLRRKL-----GKDRIRTVRGIGYRL 216 >gi|300021884|ref|YP_003754495.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299523705|gb|ADJ22174.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 225 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 124/220 (56%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD A ++ L ++V V++ G++G + FD +++D L + G Sbjct: 1 MRILLIEDDDQTAKLVKQSLVKHGYDVDVSNDGQNGFKHAVVGGFDVLVIDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A++S+P+ L+ + IED++ G +SGADDY+ KPF ELVAR+ A+ RR Sbjct: 61 SIVQRLRAARVSSPILFLTAVGGIEDRIEGFESGADDYLVKPFALGELVARVAALGRRPP 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H DL V+L + ++ G I L +E++M+E+L + +T+ M L ++ Sbjct: 121 IAHEDFYYRIADLEVDLIKREIKRGGEIIRLQPREFRMLEILVRNRGRVVTRSMLLEQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P+ I+ + +LR K+ + G I TV G GY Sbjct: 181 DLELDPKTSIVQTNVSRLRLKI-DRPGDIPLIRTVRGLGY 219 >gi|295688443|ref|YP_003592136.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430346|gb|ADG09518.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 223 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD A ++ L + V GE G+ + + FD +I+D + + G Sbjct: 1 MRILIIEDDLEAAGAMAHGLTEAGYEVEHAPDGEAGLGVAQKGGFDVLIVDRMMPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ LR TPV LS + I D+V GL++GADDY+ KP+ EL+AR+ A+ RR Sbjct: 61 QVVETLRREGDQTPVLFLSALGEINDRVTGLRAGADDYLVKPYAFPELMARVEALSRRRE 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + G+L +NL +TV QG I L +E+Q++E + ++T+ M L ++ Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P+ +IDV I +LR K+ + ++TV G GY L Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGF-DRAMLQTVRGAGYRL 221 >gi|261345195|ref|ZP_05972839.1| QseB protein [Providencia rustigianii DSM 4541] gi|282566888|gb|EFB72423.1| QseB protein [Providencia rustigianii DSM 4541] Length = 219 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + +++ L F + G+ G + +DA+ILDL L +I G Sbjct: 1 MRILLVEDDRLIGDGLKVGLTQLGFTMDWFMDGKQGQQALFDAPYDAVILDLSLPNIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R PV IL+ +++ +V+GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILKYWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALMEVAARLQALIRRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ GD+ ++ A TV QG + L GKE ++ L L++ + LY+ Sbjct: 121 GQLSPTLIHGDVEMDPQAMTVTCQGKPVQLKGKELALLSLFLHNPKKVLSRSLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V I LR+KL G +I+TV G GY L Sbjct: 181 WDEEVSSNSVEVHIHHLRRKL-----GAKFIQTVHGVGYRL 216 >gi|188993478|ref|YP_001905488.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|167735238|emb|CAP53450.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris] Length = 221 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD LA +I ++ +++ + + + A++LD+GL G Sbjct: 1 MHLLLVEDDTMLADAICDGVRQQSWTIDHVGTAAAARTALVEHHYTAVLLDIGLPGDSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R +R TPV L+ + D++RGL +GADDY+ KPF +EL+AR+RAI RRS Sbjct: 61 TVIRYMRGHYDPTPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARVRAIARRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L+ G++SV+ ++ V G + L+ EY+++ L R +TK+ +Y Sbjct: 121 GRVVPLLTQGEVSVDPSSRKVTRNGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E +I V++ +LR+KL + A I T++G+GY++ Sbjct: 181 GPSEGGSNMIAVYVHQLRRKLGDEA-----ISTIYGQGYMI 216 >gi|258538863|ref|YP_003173362.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257150539|emb|CAR89511.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 231 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 134/225 (59%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+IEDD L SI ++ +F+ L G DG+ L + FDAI+LD+ L ++ GF Sbjct: 6 KILVIEDDPDLNESIVDFVR--DFSQPEAALTGADGLYLAEEGIFDAIVLDIMLPELNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR ++ TPV IL+ ++ DKVRG + G DDY++KPF++EEL+ R++A+++R+ Sbjct: 64 DLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRT- 122 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GH + + G V+L+ V + + L GKE+ ++ L + T +TK+ + L Sbjct: 123 GHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V +++V++ LRKKL +I+T+ GY+ +E Sbjct: 183 WGFDSDTAVSVVEVYMSNLRKKLK-PMQADVWIKTIRNVGYIFQE 226 >gi|119475918|ref|ZP_01616270.1| response regulator [marine gamma proteobacterium HTCC2143] gi|119450545|gb|EAW31779.1| response regulator [marine gamma proteobacterium HTCC2143] Length = 221 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD+ALA ++ + L++E F+V G + I K D IILDLGL DI G Sbjct: 1 MKLLLVEDDEALAKALLIALRNEGFSVDHVATGNEAIAHGKNNIADIIILDLGLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR KI TP+ IL+ + DK+ L GADDY+SKPF +EL+ARIRA+ RR Sbjct: 61 TVLKELRANKIVTPMLILTARDDLSDKITALDGGADDYLSKPFEIKELMARIRALGRRMN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S+I G +S++ VEV L+ +EY +++ L TK N LY Sbjct: 121 SSISSVITAGRVSLDSANHHVEVDAIETPLSRREYTVLKALMENVGRIQTKAALENKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V I LRKK+ + +I+TV G GY + Sbjct: 181 WGEEISSNAIEVHISNLRKKMP-----EGFIKTVRGVGYTI 216 >gi|209963810|ref|YP_002296725.1| two component response transcriptional regulator [Rhodospirillum centenum SW] gi|209957276|gb|ACI97912.1| two component response transcriptional regulator [Rhodospirillum centenum SW] Length = 219 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+ EDD+AL + L + + V GE+ L + +DA++LDLGL G Sbjct: 1 MRVLVAEDDEALRRQLRDALAASGYAVDEAPDGEEAAFLGETEPYDAVVLDLGLPVRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR R I TPV IL+ + ++KV G+ +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 SALRGWRQQGIVTPVLILTARGTWQEKVEGIDAGADDYLAKPFRMEELLARLRALIRRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G + ++ V V G + LT E ++++ L + +++ H+Y Sbjct: 121 GHAAADLRCGPVLLDTRTGRVSVDGRLVSLTAHELKVLDYLMHHQGRVVSRTELTEHVYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+VF+ +LR+KL G + I T G GY Sbjct: 181 QDFDRDSNTIEVFVGRLRRKL-----GVDVIRTERGLGY 214 >gi|182418144|ref|ZP_02949444.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237666136|ref|ZP_04526123.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377962|gb|EDT75502.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237658226|gb|EEP55779.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 226 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 1/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K LA+ I+ L + V V GE+ + E+D IILDL L I G Sbjct: 1 MKLLVVEDEKTLANIIKKGLGKYGYAVDVASDGEEALWYYDINEYDVIILDLNLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R + ILS + IED+V GL GA+DY+ KPF+ EL ARIR+++RR Sbjct: 61 EVLKQIRQKDSEIKILILSARTQIEDRVLGLDEGANDYLVKPFDFLELEARIRSLIRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ G + ++ V + G + +T KEY ++ L KNT ++ E + H++D Sbjct: 121 IQENSMLSCGSIFIDTSKNLVYINGDLLSVTKKEYAILNYLLYNKNTVVSSEKLIEHIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + + LRKK++ + K I+TV G GY++ E D Sbjct: 181 SEVDLFSNTLKYHMHSLRKKIAEYS-EKEIIKTVRGCGYIVEEQDND 226 >gi|254224639|ref|ZP_04918255.1| DNA-binding response regulator [Vibrio cholerae V51] gi|125622702|gb|EAZ51020.1| DNA-binding response regulator [Vibrio cholerae V51] Length = 218 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S+++ L + + V + G + K +F A+ILDL L D+ G Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A + PV IL+ I D+V+GL GAD+YI KPF EEL+AR+R I+RRS Sbjct: 61 EVLRQIRRAGYTLPVMILTARDDIRDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI GDL ++L + + + LT EY+++ L + ++KE+ L+ Sbjct: 121 GSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKKL + N I V G GY++ Sbjct: 181 WEEGSSDNAIEVHIHNLRKKLPD-----NLIRNVRGVGYMI 216 >gi|291458230|ref|ZP_06597620.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon 078 str. F0262] gi|291418763|gb|EFE92482.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon 078 str. F0262] Length = 251 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/245 (34%), Positives = 131/245 (53%), Gaps = 27/245 (11%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +++ I L L+ E F+ + + GE+ + + Y D IILDL L I G+E Sbjct: 6 RILIVDDDSSISELISLYLEKECFDTRMVEDGEEALRIVPEYRPDLIILDLMLPGIDGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR+ + S PV +LS DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 66 VCRRLRM-RSSVPVIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRCPK 124 Query: 119 SRGHAQ---------------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQM 157 RG A + I +L +N +V +G + + KE ++ Sbjct: 125 KRGDAALPGESAETVRRAEPEGGLRSGNYIEYPELIINQSNYSVFYRGKPVEMPPKELEL 184 Query: 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217 + L+ N T+E L+H++ + + +DV I +LR+K+S G I TVWG Sbjct: 185 LYFLASSPNQVFTREQLLDHIWGYEFAGDSRTVDVHIKRLREKIS--GNGAWEIATVWGI 242 Query: 218 GYVLR 222 GY R Sbjct: 243 GYKFR 247 >gi|220907440|ref|YP_002482751.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864051|gb|ACL44390.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 240 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 130/237 (54%), Gaps = 19/237 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------------FDA 47 MRILL+ED+ LA + +L E ++V + GE IE + + +D Sbjct: 1 MRILLVEDETELALPLSRVLNHEGYSVDIASDGETAIEKLRSAQSNPATQASTSPSTYDL 60 Query: 48 IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107 +ILD L + G E+ + +R + +TP+ +L+ +++++V+GL +GADDY+ KPF E Sbjct: 61 LILDWILPRLSGLEICQWVRSQRQATPILMLTAKDTLDERVQGLDAGADDYLVKPFELRE 120 Query: 108 LVARIRAIVRRSRG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162 L+AR+RA++RR+ + ++ DL ++ + +G I+L+ KE Q++E L Sbjct: 121 LLARVRALLRRTAAIDEPTESHKMLKVDDLELDSQNQLAYRRGRAINLSEKESQLLEYLM 180 Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R L+ E HL+ G D+P ++ + LR+K+ AAG I TV+G+GY Sbjct: 181 TRSQQLLSHEEIYQHLWPGEDKPSSNVLAAQVRLLRRKI-EAAGEAPLIHTVYGKGY 236 >gi|91223635|ref|ZP_01258900.1| DNA-binding response regulator [Vibrio alginolyticus 12G01] gi|91191721|gb|EAS77985.1| DNA-binding response regulator [Vibrio alginolyticus 12G01] Length = 218 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDDK L S+ L + V + G K F A+ILDL L DI G Sbjct: 1 MRLLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGSGVTSALKTEAFTAVILDLTLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R PV IL+ I D+V+GL GADDY+ KPF EEL+AR+R ++RR Sbjct: 61 EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ +I G LS++L +++ + LT E++++ L +KE L+ Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNVGRVQSKEQLQQSLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKK K I+ + G GY+L Sbjct: 181 WDEGSSDNAIEVHIHNLRKK-----APKVVIKNIRGVGYIL 216 >gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus ATCC 53653] gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus ATCC 53653] Length = 290 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ ALA + + L+ E + V G + I + DA++LD+ L D+ G Sbjct: 65 VRVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRTTRELRPDAVVLDVMLPDMDGL 124 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 125 TVLGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSG 184 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A +S++ GDL ++ D+ V G IHLT E++++ L L+K L+ Sbjct: 185 AAAARSESVLAVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDR 244 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++++I LR+K+ AG I T G GY+++ Sbjct: 245 VWSYDFGGQANVVELYISYLRRKID--AGRSPMIHTRRGAGYLIKPG 289 >gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ LA + L LK E + V G G++ +D I+LDL L ++ G E Sbjct: 3 KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNYDVILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR +K TP+ +++ S+ D++ GL GADDY+ KPF EEL+ARIR+++RR Sbjct: 63 VARRLRESK-KTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +++I DL + + + I+LT +EY ++ L N ++E L Sbjct: 122 ETESNDKHRAIINFKDLRIEKENRIARRDNQIINLTKREYDLLLTLVENINVVQSREQLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + +YI+TV G GYV+R Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228 >gi|226226840|ref|YP_002760946.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226090031|dbj|BAH38476.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 245 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 121/227 (53%), Gaps = 10/227 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA + L+ E + V V G +G+ L K I+LDL L DI GF V Sbjct: 14 ILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLRLAKSRAHALIVLDLMLPDIDGFRV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 LR LR + TPV IL+ M DKVRG + GADDY++KPF E +AR++A++RRSR Sbjct: 74 LRELREHGVETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRRSRTA 133 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + G+++++L ++V ++G + L +EY ++ L R ++E Sbjct: 134 KPAHDVPTVQADNTRRFGNVAIDLSTRSVTLEGSAVMLRPREYDLLVALVRRDGAIASRE 193 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ D + +D + +LR+KL ++ TV GY Sbjct: 194 ELLREVWGYDDSVVSRTVDTHMAELRRKLETDPSEPRWLLTVRKTGY 240 >gi|297579859|ref|ZP_06941786.1| DNA-binding response regulator [Vibrio cholerae RC385] gi|297535505|gb|EFH74339.1| DNA-binding response regulator [Vibrio cholerae RC385] Length = 218 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S+++ L + + V + G + K +F A+ILDL L D+ G Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A + PV IL+ I D+V+GL GAD+YI KPF EEL+AR+R I+RRS Sbjct: 61 EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI GDL ++L + + + LT EY+++ L + ++KE+ L+ Sbjct: 121 GSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKKL + N ++ V G GY++ Sbjct: 181 WEEGSSDNAIEVHIHNLRKKLPD-----NLVKNVRGVGYMI 216 >gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 247 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L+ + + L+ E ++V G + + + DA++LD+ L D+ G Sbjct: 20 VRVLVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDVMLPDLDGL 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVLR +R PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RRS Sbjct: 80 EVLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRSG 139 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + GDL+++ D+ V + LT E++++ L L+K L+ Sbjct: 140 MTAAQQGSELAVGDLTLDEDSHEVRRGDVEVDLTATEFELLRFLMRNPRRVLSKAQILDR 199 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LRKK+ N G I TV G GYVL+ Sbjct: 200 VWHYDFGGQSNVVELYISYLRKKIDN--GRAPMIHTVRGAGYVLK 242 >gi|315498979|ref|YP_004087783.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315416991|gb|ADU13632.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 224 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD A +++ L + F VT GE G++ + EFD ++LD + + G Sbjct: 3 KVLIVEDDVEAALTMQKGLSEQGFESVVTHDGEAGLKALREGEFDVVVLDRMMPGLDGVS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 +L R + PV LS + +ED+V GL++GADDY+ KP+ ELVAR+ A++RR Sbjct: 63 MLEIARSEGMDVPVLFLSALGELEDRVYGLKAGADDYLVKPYALVELVARLEALLRRKDT 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + GDL +NL ++ V+ I L +E+Q++E L ++T+ M L ++ Sbjct: 123 GAVETTLRVGDLEMNLISRVVKRGNSEIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVWA 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P+ +IDV I +LR KL + + TV G GY L+ Sbjct: 183 YHFDPQTNVIDVHISRLRAKLDKGF-DRAMLHTVRGEGYQLK 223 >gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 247 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 129/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ +LA + + L+ E + V G + + + DA+ILD+ L D+ G Sbjct: 22 VRVLVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDIMLPDVDGL 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 82 SLLGRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 141 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++SL+V GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 142 AALARSESLLVVGDLTLDEDSHEVTRGGDSIHLTATEFELLRYLMRNPRRVLSKAQILDR 201 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++++I LR+K+ AG I T G GY+++ Sbjct: 202 VWSYDFGGQANVVELYISYLRRKID--AGRAPMIHTRRGAGYLIKPG 246 >gi|90411546|ref|ZP_01219556.1| Putative transcriptional regulator [Photobacterium profundum 3TCK] gi|90327436|gb|EAS43789.1| Putative transcriptional regulator [Photobacterium profundum 3TCK] Length = 225 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ L ++L L +F + G DG+ E+D I+LD+ L D+ G+ Sbjct: 1 MKILIIEDETKLGKYLQLGLNESSFTTDWVNNGLDGLHQAMSPEYDLILLDVMLPDLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L ++ + P+ +L+ S+ED+V+GLQ GADDY+ KPF EL+ARI+ VR++ Sbjct: 61 EILTKIKAYYPTRPIIMLTARDSVEDRVKGLQLGADDYLVKPFAFIELIARIQNQVRKNE 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A +T DL ++L + V I LT KE+ ++ELL R+ L+K + ++ Sbjct: 121 NVATKTTLTIADLHIDLLRRRVTRNDQHIDLTAKEFLLLELLVSREKEVLSKAFIASKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V I +LRKK+ + K I T+ G GYV+ Sbjct: 181 DMNFDSDTNVIEVAIRRLRKKVDDPFEFK-LIHTLRGMGYVM 221 >gi|186683925|ref|YP_001867121.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466377|gb|ACC82178.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 225 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 126/223 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ L + + V V GE G K ++D ++LD+ L ++ G Sbjct: 1 MRILLVEDDVRLAETLAEALTDQRYMVDVVTDGEAGWNQAKMLDYDLLLLDVMLPELDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR S PV +L+ ++ DK+ GL +GADDY+ KP + +EL ARIRA++RR Sbjct: 61 SLCHRLRSHSYSMPVLMLTARDTVSDKITGLDAGADDYVVKPVDLQELFARIRALLRRGN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G+L +N V + +HLT KEY ++ELL L++ + + H++ Sbjct: 121 VSSPPILEWGNLHLNPSTYEVSYGKNMLHLTPKEYGILELLLRNGRRVLSRSVIIEHIWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 PE + V + LR+KL A +++IETV G GY L++ Sbjct: 181 LESPPEEHAVKVHLRSLRQKLKAAGAFEDFIETVHGIGYRLKQ 223 >gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 229 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L E F V V G D + +D I+LDL L + GF Sbjct: 1 MRVLVVEDEPRTAALLRRGLAEEGFAVDVVADGGDAVWQASEITYDVIVLDLMLPVLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A+ PV +LS + D+VRGL GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 EVCRRLRAAERWAPVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L ++ + G + L+ KE+ ++E L L++ L+H++D Sbjct: 121 QERPVVLDIDGLRLDPTVRAASRDGVELDLSPKEFALLEYLMRHPGQVLSRTTILDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++D ++ LR+K+ G +ETV G GY LR NA Sbjct: 181 LAYDRNSNVVDQYVAYLRRKIDKPFGVAQ-LETVRGAGYRLRVNA 224 >gi|284035840|ref|YP_003385770.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283815133|gb|ADB36971.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 223 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ LA I ++E F V + G+ G L + +D +ILD+ L + GF Sbjct: 1 MKLLVVEDDQKLASFISKGFEAEAFEVTIAPDGQAGWRLFQANPYDVVILDVNLPYLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R PV +L+ + + DK G SGADDY+ KPF EL+ R++A+ RR Sbjct: 61 ELCRYIRQQTNEVPVLLLTALDGLNDKAEGFGSGADDYLCKPFEFRELLWRVQALTRRHY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q ++ DL ++ DA+ V G I LT EY ++E L + +++ +++ Sbjct: 121 RERQRVLQVADLVLDPDARQVIRGGKHIPLTSHEYALLEYLMRNRGQVVSRVDIAERVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +IDV++ LRKK+ K + TV G GYVLRE Sbjct: 181 VNLATSTNVIDVYMGYLRKKVDRDFASK-LLHTVVGMGYVLRE 222 >gi|229553724|ref|ZP_04442449.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229312895|gb|EEN78868.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 237 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 134/225 (59%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+IEDD L SI ++ +F+ L G DG+ L + FDAI+LD+ L ++ GF Sbjct: 12 KILVIEDDPDLNESIVDFVR--DFSQPEAALTGADGLYLAEEGIFDAIVLDIMLPELNGF 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR ++ TPV IL+ ++ DKVRG + G DDY++KPF++EEL+ R++A+++R+ Sbjct: 70 DLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRT- 128 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GH + + G V+L+ V + + L GKE+ ++ L + T +TK+ + L Sbjct: 129 GHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V +++V++ LRKKL +I+T+ GY+ +E Sbjct: 189 WGFDSDTAVSVVEVYMSNLRKKLK-PMQADVWIKTIRNVGYIFQE 232 >gi|197284770|ref|YP_002150642.1| DNA-binding transcriptional regulator PhoP [Proteus mirabilis HI4320] gi|227357776|ref|ZP_03842125.1| two-component response regulator [Proteus mirabilis ATCC 29906] gi|194682257|emb|CAR41989.1| two-component response regulator [Proteus mirabilis HI4320] gi|227162105|gb|EEI47119.1| two-component response regulator [Proteus mirabilis ATCC 29906] Length = 224 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL+IED+ L H + + + V D +D E F D I+DLGL D Sbjct: 1 MRILIIEDNILLRHHLSVQFRDAGHQV---DAAQDAKEADHFIAESTPDVAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R I+ P+ +L+ S ++KV L +GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGISLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A ++ ++L K + G +I LT EY ++E L +N ++K++ + Sbjct: 118 RNMGIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY ++ E IDV + +LRKK+ + I TV G+GY Sbjct: 178 LYPDAEQRESHTIDVLMGRLRKKILQKYDN-DVIVTVRGQGY 218 >gi|121281851|gb|ABM53484.1| putative two component transcriptional regulator winged helix family [uncultured bacterium CBNPD1 BAC clone 67] Length = 225 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 126/226 (55%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLG---EDGIELCKFYEFDAIILDLGLTDI 57 MR+LL+ED++ L + ++ L F VTD D +L + FDA+++D GL D Sbjct: 1 MRLLLVEDERRLGNLLQASLHEAGF---VTDRALDLADARDLARRERFDALLVDRGLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E++R LR A + PV +L+ + D+V GL++GADDY+ KPF EEL+AR+RA++R Sbjct: 58 DGLELVRELRAAGNAVPVLVLTARDGVPDRVAGLENGADDYLVKPFAIEELIARVRAVLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G + GD+ + + V + + L E +E L R +T+E+ ++ Sbjct: 118 RPGGALGQELRAGDIIYDAIERVVIIGARNLVLPRHELATLECLMRRLGRVVTREILIDA 177 Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LY GRD EP + V I LR+KL AG + I T G GY+LR Sbjct: 178 LY-GRDGEPASNAVPVHIHNLRRKLQE-AGAQARIITFRGLGYMLR 221 >gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi 103S] gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi 103S] Length = 224 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 130/225 (57%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ +L + + L+ + F V G +G++ + + DA+ILD+ + + GF + Sbjct: 1 MLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFGM 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + PV L+ ++EDKV GL GADDY++KPF+ EE+V R+R I+RR+ GH Sbjct: 61 LRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRA-GH 119 Query: 123 A---QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + QS VT DL ++ D + V G + L+ E+ ++ + T L+K L+H+ Sbjct: 120 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ EV +++ ++ LR+K+ I T+ G GYV+RE Sbjct: 180 WNYDFGGEVGVVESYVSYLRRKIDTTE--PRLIHTLRGVGYVMRE 222 >gi|262368892|ref|ZP_06062221.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262316570|gb|EEY97608.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 226 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 11/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A S + +L+ + F+V + G DG++ + Y FD ++LDLGL + G + Sbjct: 3 KILIIEDDFMIAESTQTLLRYQQFDVVWVNNGFDGLKQLQQYPFDVVLLDLGLPMMDGMQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL+ +R + PV I+S ++++V GL GADDY+ KP+ +EL+ARI A++RRS Sbjct: 63 VLKNIRSLYPTLPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGA 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +Q+L G L ++ D + +G I L+ +E+ ++ L N +K Sbjct: 123 LKQQKQSQTLSYAG-LELDEDLHLAKYKGQTIDLSNREWAILIPLVSHPNKIFSKTNLEE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LYD E I+V+I LR KL GK++I T+ G GY L Sbjct: 182 KLYDLDSEINSNTIEVYIHHLRAKL-----GKDFIRTIRGLGYRL 221 >gi|300767184|ref|ZP_07077096.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495003|gb|EFK30159.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 228 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 135/227 (59%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K LA +EL LK E +++ V G G++ +FDAI+LDL L ++ G E Sbjct: 3 RILIIEDEKNLARFVELELKYEGYDIQVEYNGRKGLDAALAEDFDAILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115 V R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA + Sbjct: 63 VCRRVREVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDL 121 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ + DL++ + V+ I+LT +EY+++ L N L +++ L Sbjct: 122 ESEQQSTKQTTVTYKDLTIEKENLVVKRGDEVINLTKREYELLLTLMENINVVLARDVLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ E E ++DV+I LR K+ + G K+YI+TV G GYV+R Sbjct: 182 NKVWGYESEVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227 >gi|257485787|ref|ZP_05639828.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130309|ref|ZP_07256299.1| heavy metal response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|6045171|dbj|BAA85309.1| ORFR [Pseudomonas syringae] gi|331012883|gb|EGH92939.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 228 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L+ FNV G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR A S PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 EVIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q+ + GDL V+L + G RI LT KE+ ++ELL R+ L+K + + + Sbjct: 121 SSLPVQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +D + + +I+V I +LR K+ + K + T G GY+L +A+DE Sbjct: 181 WDMNFDSDTNVIEVAIRRLRAKIDDDFEAK-LLHTCRGMGYML--DAQDE 227 >gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium 2_1_46FAA] Length = 229 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +E K E+D I+LD+ L GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEKAKAQEYDLILLDIMLPKYTGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R PV +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQMIREFS-DVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGK 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++I+ D+ ++ ++ V V G I+LT KE+ ++ELL+ + ++E LN Sbjct: 123 SVKEKEDKNIILKNDMKIDRQSRRVYVDGKEINLTAKEFDLLELLATNPDKVYSREELLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV + +LR+K+ Y+ T WG GY R Sbjct: 183 IVWGYEYPGDARTVDVHVRRLREKVEPNPSEPKYVYTKWGVGYYFR 228 >gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 243 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + S+ L+ F+V V G++ + L DA++LD+ + ++ G V Sbjct: 20 VLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAV 79 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + ALR P+C+LS ++ D++ GL++GADDY++KPF+ ELVAR+ A++RR+ Sbjct: 80 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 139 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+++ + V V G R+ LT +E+ ++ +L+ L+++ L ++ Sbjct: 140 DRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVWG 199 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + DVFI LR+KL G I TV G GYVLR+ Sbjct: 200 YDFDVDTNVADVFISYLRRKLER-DGLPRVIHTVRGIGYVLRD 241 >gi|146301142|ref|YP_001195733.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155560|gb|ABQ06414.1| two-component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 224 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L + N V V G+ +E+ Y FD ++LD+ L DI G Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R LR +K P+ +L+ + + E+ V GL SGADDY+ KPF EL AR+ A+ RR+ Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I GDL +N AKTV+ G I LT KE++++ L ++++ L+++ Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D + ++DV+I LRKK+ K I T+ G GYV++ Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTK-LIHTMKGLGYVIK 223 >gi|295108877|emb|CBL22830.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 225 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 119/223 (53%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED++ L SI L+ + G +G+ELC +D I+LDL L G Sbjct: 1 MHILIIEDEEQLCCSIAEGLRMNGYETDTCFDGNEGLELCMTESYDLILLDLNLPGTDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R + +TPV ILS I+DKV GL GA+DY++KPF+ EEL ARIR++ RR Sbjct: 61 DILQQFRTSDSTTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G + + + V + LT KE ++E L + ++ E + HL+D Sbjct: 121 IQEDICLKCGRIIFDTRTRKASVDDATLSLTRKESALLEYFLLHQGRIISPEEMIEHLWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G I V I LRKKL AA G + I+ G+GY+L E Sbjct: 181 GSVNSFSNSIRVHISSLRKKL-RAALGFDPIQNKIGQGYILME 222 >gi|224588354|gb|ACN58978.1| two-component response regulator [uncultured bacterium BLR19] Length = 226 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED++ L +S+ KSE + E+G+E Y++D II D+GL D G Sbjct: 1 MKVLIIEDEEELINSLRTFFKSEGHICETSSSFEEGMEKINLYQYDCIIADIGLGDGNGL 60 Query: 61 EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++++ L+ + + T V I+S SS+EDK+ GL+ GADDY++KPF+ EL AR+++++RR Sbjct: 61 DIVKELKGKRNNNTGVIIISAKSSLEDKITGLEIGADDYLTKPFHLSELNARLKSVLRRR 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I+ ++ + D VEV G I LT KEY ++ K L KE + HL+ Sbjct: 121 MFDGEQAIIFNEIKIAPDTMKVEVNGKPIVLTKKEYDLLIYFISNKTKILPKETIVEHLW 180 Query: 180 DG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + LRKKL + GG++YI+TV+ GY Sbjct: 181 GDYISTSDSYDFLYTHVSNLRKKLMD-NGGEDYIKTVYKIGY 221 >gi|37519591|ref|NP_922968.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210582|dbj|BAC87963.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 222 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A +E L++ + V G + ++ +FD +ILDLGL G Sbjct: 3 RILIAEDETRIAAFLEKGLRANGYTTIVVRNGVEAAQMASCDDFDLMILDLGLPGKAGLV 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 VL +R PV IL+ I DKV GL+SGADDY++KPF EEL+AR+RA +R Sbjct: 63 VLEEMRGRGERLPVIILTARDDIADKVAGLESGADDYVTKPFRFEELLARVRARLRDTGN 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R Q ++ +G++S++L + V G + L+ +E+ + E +++E L+ + Sbjct: 123 GRTQEQLVLRSGEISLDLRTRKVSAGGRTVELSAREFTLAETFMRHPGQVMSREHLLSRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P I+DV++ LR+KL+ + IETV G GY LR Sbjct: 183 WGYDYDPGSNIVDVYVGYLRRKLNT-----DRIETVRGMGYRLR 221 >gi|225027798|ref|ZP_03716990.1| hypothetical protein EUBHAL_02057 [Eubacterium hallii DSM 3353] gi|224954848|gb|EEG36057.1| hypothetical protein EUBHAL_02057 [Eubacterium hallii DSM 3353] Length = 232 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 132/228 (57%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK----FYEFDAIILDLGLTD 56 MR+L++ED+K L + ++ L+ + Y D+ DG E+ K Y +D I+LD+ L Sbjct: 11 MRMLIVEDEKDLCNILKKRLQKD----YTIDICMDG-EIAKDYLNTYTYDIILLDIMLPK 65 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 I G +L+ LR K +TPV +L+ SSIE++V GL SGADDY+ KPF EEL AR+R ++ Sbjct: 66 IDGITLLKWLRNQKKTTPVLLLTAKSSIEERVNGLDSGADDYLIKPFAFEELQARLRVLL 125 Query: 117 RRS-RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR+ +++ DL ++ K V G I LT KEY++++ + L+++ Sbjct: 126 RRNIAADPSDILIYEDLVMDTKKKKVSRNGKEISLTTKEYKLLQYMMRNPGHVLSRDQLE 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D E IIDV+I LRKK+ ++ K I TV+G+GY L E Sbjct: 186 QRGWDSTFEGGSNIIDVYIRYLRKKI-DSDYEKKLIHTVYGKGYCLGE 232 >gi|94495066|ref|ZP_01301647.1| DNA-binding response regulator [Sphingomonas sp. SKA58] gi|94425332|gb|EAT10352.1| DNA-binding response regulator [Sphingomonas sp. SKA58] Length = 224 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 128/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD +A I L ++ + + G G+ + FD +I+D L D+ G Sbjct: 1 MRILLIEDDAEMAGFIADALAAQGQDTVIEAEGRQGLRRAQSENFDVLIVDRMLPDMEGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R +S P+ +L+ + +IED+V+GL SGADDY+ KPF EL AR+ A+ RR + Sbjct: 61 QLVSQMRDLGLSEPILMLTSLGAIEDRVKGLASGADDYLVKPFAIAELSARLDALSRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + ++ + +G RI L +E++++E L +++ +++ M L ++ Sbjct: 121 SGLSDTGACGTIKIDRVRREAWREGQRIVLQPREFELLEQLIRQQDQVVSRAMLLEQVWH 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +P+ I++ + +LR+KL NA + I+TV G GY LR +A Sbjct: 181 FHFDPQTNIVETHMSRLRQKL-NAGFDCDPIQTVRGVGYKLRSDA 224 >gi|319949856|ref|ZP_08023868.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4] gi|319436481|gb|EFV91589.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4] Length = 226 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD ALA + ++L+ E F + G IE + + D ++LDL L G + Sbjct: 4 KILVVDDDAALAEMLTIVLRGEGFETEIVGDGVQAIETFRAVQPDLVLLDLMLPGKSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ + D V GL+SGADDYI KPF +ELVARIRA +RR Sbjct: 64 VCREIR-AESRVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRGED 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GD+++++ A TV G I LT E+ ++ L+ + T+E+ L H++ Sbjct: 123 EPSETLHIGDVTIDVPAHTVTRDGTPIPLTPLEFDLLVELARKPRQVFTREVLLEHVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHSADTRLVNVHVQRLRAKIEKDPENPEVVLTVRGVGY 220 >gi|257783900|ref|YP_003179117.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257472407|gb|ACV50526.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 226 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 1/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L SI L+ + + V + D G +E+ + ++D I+LDL L I G Sbjct: 1 MKILVVEDEKELLASIGEGLELDGYYVDLVDNGTQALEMAQLEQYDLILLDLNLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR T V ILS SS+ D++ GL +GADDY+ KPF EL ARIR ++RR Sbjct: 61 DLLRTLRSEHSETKVLILSARSSVSDRIVGLDAGADDYLIKPFAFGELEARIRTLLRREY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H ++ + G+L + A+ V V +++LT KE ++E L ++ E + H +D Sbjct: 121 IHGEASLTLGELRFDTTARQVFVGDAQVNLTKKELAILEYLMRNAGAVVSSEELMAHAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + V I +RKKL A G + I G GY ++++ D Sbjct: 181 SNVDLFSNSVRVHIFSIRKKLREAL-GYDPISNKVGEGYCFKKDSDD 226 >gi|291613481|ref|YP_003523638.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291583593|gb|ADE11251.1| two component transcriptional regulator, winged helix family [Sideroxydans lithotrophicus ES-1] Length = 222 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRIL+IEDD L +I+ LK Y D +DG+ + + A +LDLGL + Sbjct: 1 MRILVIEDDALLGDAIQAGLKQSG---YAVDWMKDGVSADQALSTEAYAAAVLDLGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL+ LR PV IL+ M ++ED+++GL +GADDY+ KPF+ EL AR+RA++R Sbjct: 58 SGLEVLQRLRSRNTPIPVLILTAMDTVEDRIKGLDAGADDYLVKPFDMGELAARLRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G + + + A V + I L KE+ ++ L L L++ Sbjct: 118 RASGKPAPALQVAGVEMEPAAHRVLYRNSAIELPAKEFAVLHALMLNAGRVLSRTQIEEQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY +E E ++V+I LR+KL IET+ G GY++ Sbjct: 178 LYAWGEEVESNAVEVYIHHLRRKLF-----PELIETIRGVGYLI 216 >gi|218437945|ref|YP_002376274.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218170673|gb|ACK69406.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 238 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 124/231 (53%), Gaps = 14/231 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 MR+LL+ED+ L I+ ML EN Y+ D +DG + E + I D L Sbjct: 1 MRLLLVEDEPDLGAIIQRMLNREN---YLVDWVQDGATAWNYLEQEWIEYSVAIFDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 I G E+ + LR S PV IL+ S I+D V GL +GADDY+ KPF K EL+ARIRA+ Sbjct: 58 KISGLELCQRLRQQNCSLPVLILTAKSDIQDMVTGLDAGADDYLIKPFVKAELLARIRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTV---EVQG--HRIHLTGKEYQMIELLSLRKNTTLT 170 RR+ S + G L+++ +V QG I LT E++++E N TLT Sbjct: 118 QRRALHIQPSQLQIGPLTLDYAKSSVFTSNSQGKPQTIPLTANEFRLLEYFMKHPNQTLT 177 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ L L++ D P ++ I LR+KL++ G K+ IETV G GY L Sbjct: 178 RDQLLAQLWETDDAPISNVVSARIRLLRRKLAD-YGCKDLIETVHGFGYRL 227 >gi|221067032|ref|ZP_03543137.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220712055|gb|EED67423.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 230 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 123/227 (54%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ LA + L E F V V G DG+ L ++D I+LD L I G Sbjct: 1 MKILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL ALR K TPV +L+ +ED+V+GLQ GADDY+ KPF ELVAR+ ++RRS Sbjct: 61 AVLAALRQTK-QTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSG 119 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + DL ++L + G RI LT KE+ ++ LL R+ L++ Sbjct: 120 PSVAQTAPEATTLRLSDLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLSRTEL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D + E +++V + +LR KL K + TV G GYVL Sbjct: 180 ASQVWDMNFDSETNVVEVAVRRLRLKLDQPF-EKPLLHTVRGMGYVL 225 >gi|300689759|ref|YP_003750754.1| response regulator, cheY family [Ralstonia solanacearum PSI07] gi|299076819|emb|CBJ49429.1| putative response regulator, CheY family [Ralstonia solanacearum PSI07] Length = 224 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ LA + L+ F V GE L +D ++LDL L + G Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + + PV IL+ I+DKV L +GADDY+ KPF EL+ARI+ +VRR+ Sbjct: 61 AVLQRLRDRRNAVPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDLS + ++T + G + L +E+ ++E+L L+ T++K +N ++ Sbjct: 121 PANAVELQCGDLSYHSGSRTFALAGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ + I+++I +LRKKL ++A I T+ G GY+LR+ Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAA---TIVTLRGLGYLLRD 220 >gi|284051075|ref|ZP_06381285.1| multi-component transcriptional regulator [Arthrospira platensis str. Paraca] Length = 587 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 117/222 (52%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD+ L + LK+ N+ V + GE G + +E+ +ILD+ L + G Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR PV +L+ S EDKV GL +GADDY+ KP EEL+AR+RA++RR+ Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL++N + Q + LT KEY ++EL + + + HL+ Sbjct: 121 ISLPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I LR KL +A G IE V+G GY ++ Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222 >gi|260598679|ref|YP_003211250.1| transcriptional regulatory protein TctD [Cronobacter turicensis z3032] gi|260217856|emb|CBA32382.1| Transcriptional regulatory protein tctD [Cronobacter turicensis z3032] Length = 226 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L + F V G L + + +LD+ + + G Sbjct: 1 MRLLLAEDNRELAHWLEKALTNTGFAVDCVGDGLAAEHLLQNERYAVAVLDIEMPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ ++ D+V+GL GADDY+ KPF EL AR+RA+VRRS Sbjct: 61 EVLSRLRRRGQAVPVLLLTAHGAVADRVKGLNEGADDYLPKPFELSELEARLRALVRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q G+L+ + DA E+QG + LT +E+ ++ +L R+ +T++ ++ Sbjct: 121 GQVQEAQRLGELTFH-DAGYFELQGRPLALTPREHALLTVLMYRRRRPVTRQQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKL--SNAAGGKNYIETVWGRGYVL 221 D+ + I+++I +LRKKL SN I T+ G GYVL Sbjct: 180 LSDDVSPESIEIYIHRLRKKLLASNVQ-----ITTLRGLGYVL 217 >gi|126172546|ref|YP_001048695.1| two component transcriptional regulator [Shewanella baltica OS155] gi|152998839|ref|YP_001364520.1| two component transcriptional regulator [Shewanella baltica OS185] gi|217971506|ref|YP_002356257.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304411761|ref|ZP_07393373.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307306187|ref|ZP_07585932.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125995751|gb|ABN59826.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151363457|gb|ABS06457.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|217496641|gb|ACK44834.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304349949|gb|EFM14355.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911060|gb|EFN41487.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] Length = 225 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 128/231 (55%), Gaps = 16/231 (6%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ILL+EDD A +I+ ++K + N+ G G+ L ++D +ILD L + Sbjct: 1 MKILLVEDD---ATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS ++ ++++V+GL++G DDY++KPF EL+ R ++ Sbjct: 58 DGLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMH 117 Query: 118 RSRGHAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R QS+ VT DL V L + V + G + L KE+Q+++ L N +++ Sbjct: 118 R----GQSVPVTTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRT 173 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 174 LLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQ 223 >gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506283|ref|YP_004085170.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 246 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + V G + + + DA++LD+ L D+ GF Sbjct: 20 VRVLVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTARQFRPDAVVLDVMLPDLDGF 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +VLR LR S PV L+ ++E++V GL G DDY++KPF+ EE++AR+RA++RRS Sbjct: 80 QVLRRLREQFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSG 139 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++++ GDL+++ D+ V I LT E++++ L L+K L+ Sbjct: 140 FAVAARQEAVLTVGDLTLDEDSHEVRRGDDLITLTATEFELLRYLMRNPRRVLSKAQILD 199 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ AG I T+ G GYVL+ Sbjct: 200 RVWNYDFGGQANVVELYISYLRKKID--AGRAPMIHTLRGAGYVLK 243 >gi|157267317|gb|ABV26372.1| PhoP [Proteus mirabilis] Length = 230 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL+IED+ L H + + + V D +D E F D I+DLGL D Sbjct: 7 MRILIIEDNILLRHHLSVQFRDAGHQV---DAAQDAKEADHFIAESTPDVAIVDLGLPDE 63 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R I+ P+ +L+ S ++KV L +GADDY++KPF+ EE+VAR++A++R Sbjct: 64 DGISLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMR 123 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A ++ ++L K + G +I LT EY ++E L +N ++K++ + Sbjct: 124 RNMGIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQ 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY ++ E IDV + +LRKK+ + I TV G+GY Sbjct: 184 LYPDAEQRESHTIDVLMGRLRKKILQKYDN-DVIVTVRGQGY 224 >gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 241 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + + LK + + V + G I+ C+ ++ DA+ILD+ + + GF Sbjct: 15 KILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILDVMMPGMDGFG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR I P LS S+EDK+ GL G DDY++KPF+ EE+VAR++ ++RRS Sbjct: 75 LLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRRSGF 134 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A S I D+ ++ + V G+ + L+ E+ ++ + T L+K L+H Sbjct: 135 DATEKQASRITFADIELDDETHEVFKAGNLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ EV +++ ++ LR+KL G K I T+ G GYV+RE Sbjct: 195 VWNYDFGGEVNVVESYVSYLRRKLDT--GDKRLIHTLRGVGYVMRE 238 >gi|189351379|ref|YP_001947007.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221200185|ref|ZP_03573228.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] gi|221206662|ref|ZP_03579674.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221211364|ref|ZP_03584343.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|189335401|dbj|BAG44471.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221168725|gb|EEE01193.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|221173317|gb|EEE05752.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221180424|gb|EEE12828.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] Length = 220 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+S+ F V GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGESALTALGGESYDLLLLDLGLPKRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR +S PV I++ +I D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++SLI G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL G + I V G GY++ Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 216 >gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum NCIMB 41171] gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 245 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 127/232 (54%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F+V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL +N D+ V GH I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGHAIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLRE 223 + I++ +I LRKK+ G+ + IET G GY++RE Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIMVTDDNGEQHKVTPLIETKRGIGYMIRE 240 >gi|311280552|ref|YP_003942783.1| two component heavy metal response transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749747|gb|ADO49499.1| two component heavy metal response transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 227 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + D G G L ++D I+LD+ L D+ G+ Sbjct: 1 MKILIVEDEVKTGEYLSKGLTEAGFVVDLADNGLTGYHLAMTADYDLIVLDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL+++L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIPESQFQVADLTLDLVSRKVSRGGARITLTSKEFTLLEFFIRHRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GYVL Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYVL 221 >gi|300022650|ref|YP_003755261.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299524471|gb|ADJ22940.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 223 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++EDDK L + L F V GE+G L +D +ILD+GL I G Sbjct: 1 MRALVVEDDKDLNRQLAAALADAGFAVDTAADGEEGYFLGDTEPYDVVILDIGLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + PV +L+ DKV G+ +GADDY++KPF+ EEL+AR+RA +RR+ Sbjct: 61 SILEQWRRSDRKMPVILLTARDRWSDKVTGMDAGADDYLAKPFHMEELLARVRAQIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH +S I G + ++ + V G + LT E++++ L +++ + HLYD Sbjct: 121 GHVKSEIECGPIRLDTKSARVTCDGLPVKLTSHEFRLLAYLMHHNGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+VFI +LRKK+ + I+TV G GY + + Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIPG-----DVIQTVRGLGYRMSQGP 220 >gi|330818556|ref|YP_004362261.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327370949|gb|AEA62305.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 224 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL IEDD +A SI L ++ +V V G +GI ++DA+ LD L D+ G Sbjct: 3 KILTIEDDVLIADSIARQLHAQGHSVDVARTGREGIAKVMAGDYDAVTLDRMLPDLDGLA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 +L +R + TPV ++S MS ++ ++ GL++G DDY+ KPF+ +E+VAR+ ++RR Sbjct: 63 ILSTMRGVGLDTPVLVMSAMSEVDQRIAGLRAGGDDYLVKPFSLDEMVARLEVLMRRRPR 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 HA++++ + ++L +T + + L E++++E + LT+ M ++ Sbjct: 123 NAHAETVLRANGIELDLVRRTAMLGARELDLLPTEFRVLEFMMRHAGRVLTRTMIFEGVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R +P +IDV + +LR+K+ N +G I T+ G GY+L Sbjct: 183 GCRFDPGTNLIDVHVGRLRRKI-NRSGESPLIRTIRGAGYML 223 >gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 774 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 117/222 (52%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD+ L + LK+ N+ V + GE G + +E+ +ILD+ L + G Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR PV +L+ S EDKV GL +GADDY+ KP EEL+AR+RA++RR+ Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL++N + Q + LT KEY ++EL + + + HL+ Sbjct: 121 ISLPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I LR KL +A G IE V+G GY ++ Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I+ I DD + +E +L V + ++ + D +I+D+ + G + Sbjct: 487 KIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R P+ +L+ + E + ++GADD+ISKP EL+AR+ + + RS Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRS 606 Query: 120 R 120 R Sbjct: 607 R 607 >gi|254486555|ref|ZP_05099760.1| two component response regulator [Roseobacter sp. GAI101] gi|214043424|gb|EEB84062.1| two component response regulator [Roseobacter sp. GAI101] Length = 225 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ILL EDD +A I L +V +V+D G D + C + + D ILD L + G Sbjct: 1 MKILLAEDDPKIADYIVAGLSENGHSVDHVSD-GRDALSYCLYNDCDMAILDRMLPGMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 VL+ALR +K S PV L+ + +ED+V GL +G DDY++KPF+ EL ARI AIVRR Sbjct: 60 LSVLKALRASKKSLPVLFLTALGQVEDRVEGLAAGGDDYLTKPFHFSELTARIDAIVRRK 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S A+ + DL+++L A+T QG+ I L KE+ ++E+L +T+ L + Sbjct: 120 SETTAEPSLTVHDLTLDLLARTATRQGNLIELHNKEFSILEILMRNSGRIVTRTQLLERV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ EP +++ + +LR K+ + I T+ GY + Sbjct: 180 WNFNFEPNTTVVETHLSRLRAKI-DKPFDTPLIHTIRNTGYSM 221 >gi|294339915|emb|CAZ88278.1| Transcriptional activator protein czcR [Thiomonas sp. 3As] Length = 242 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L F V G DG+ L +D I+LD L G+ Sbjct: 18 MRILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAMLPGRDGW 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR A+ +TPV +L+ + D+VRGL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 78 SVLSELR-ARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGV 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL V++ + E G R+ LT KE+ ++ LLS R L++ + ++D Sbjct: 137 TRLPEVMEVADLRVDMHRQRAERGGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWD 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV I +LR KL + TV G GYVL Sbjct: 197 MNFDSDTNVVDVHIRRLRSKLDEPFPAP-LLHTVRGVGYVL 236 >gi|237730523|ref|ZP_04561004.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2] gi|226906062|gb|EEH91980.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2] Length = 227 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 1 MKVLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIVESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 221 >gi|254228323|ref|ZP_04921750.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262394388|ref|YP_003286242.1| DNA-binding response regulator [Vibrio sp. Ex25] gi|151939129|gb|EDN57960.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262337982|gb|ACY51777.1| DNA-binding response regulator [Vibrio sp. Ex25] Length = 218 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDDK L S+ L + V + G K F A+ILDL L DI G Sbjct: 1 MRLLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGYGVTSALKTEAFTAVILDLTLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R PV IL+ I D+V+GL GADDY+ KPF EEL+AR+R ++RR Sbjct: 61 EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ +I G LS++L +++ + LT E++++ L +KE L+ Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKK K I+ + G GY+L Sbjct: 181 WDEGSSDNAIEVHIHNLRKK-----APKVVIKNIRGVGYIL 216 >gi|116696499|ref|YP_842075.1| response regulator [Ralstonia eutropha H16] gi|113530998|emb|CAJ97345.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 237 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 125/227 (55%), Gaps = 12/227 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-----FDAIILDLGL 54 MR+LL+EDD + S++L L+ E F V +V D G+ G+ + +D I+LDLGL Sbjct: 1 MRVLLVEDDAMIGDSVKLALRQEGFTVDWVRD-GDAGLAAASTAQHGQACYDLILLDLGL 59 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 PG +VLR LR + TPV IL+ ++ D+V GL +GADDY+ KPF+ +EL AR+ A Sbjct: 60 PRRPGLDVLRTLRARGVPTPVLILTARDAVADRVAGLNAGADDYLVKPFDLQELAARMHA 119 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + RR+ G A+ L+ GD+ +N + +G + L+ +E+ ++ L R + Sbjct: 120 LARRAAGRAEPLVSYGDIVLNPTTREATHRGEPVRLSAREFALLAALMARPGKVWSVPQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY DE ++V+I LRKK G I + G GYV+ Sbjct: 180 QERLYGWDDEVGSNTVEVYIHALRKKF-----GAALIRNIRGVGYVV 221 >gi|289435683|ref|YP_003465555.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171927|emb|CBH28473.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313632083|gb|EFR99179.1| regulatory protein VanR [Listeria seeligeri FSL N1-067] gi|313636469|gb|EFS02215.1| regulatory protein VanR [Listeria seeligeri FSL S4-171] Length = 231 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y+ G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q+ ++ G + V+ V V G +HLT E+ ++ LL + E Sbjct: 125 SQAEPISQDKVIIGPIVVDRALHVVTVSGKELHLTTSEFDILFLLVSEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL +A GG+N I+T+WG GY Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGY 227 >gi|326317102|ref|YP_004234774.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373938|gb|ADX46207.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 230 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD +A ++ L++E + V + G +G+EL + E +ILD+ L + G + Sbjct: 5 QILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLELARAGEATLLILDVMLPGMTGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + ++LR PV +L+ +SSIEDKV GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 65 LCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGRE 124 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL ++L+ G I LT KE +ELL ++E L++++ Sbjct: 125 QRPRATRLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++P ++DV++ +LR K+ + ++TV G GY L Sbjct: 185 GMHEDPLTNVVDVYVRRLRSKI-DEGHPLALLKTVRGLGYRL 225 >gi|220925326|ref|YP_002500628.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219949933|gb|ACL60325.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 228 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MR+L+IEDD+ A + + +V DL DG++ L + ++D +++D L + Sbjct: 1 MRLLIIEDDREAASYLSKAFREAG---HVADLAADGLDGYALAREGDYDVLVVDRMLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R+LR + TPV ILS + ++D+V+GL++G DDY+ KP+ EL+ARI + R Sbjct: 58 DGLSLIRSLREQGVETPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARIEVLAR 117 Query: 118 RSRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R G A + GDL ++ + V G I L +E++++E L +T+ M L Sbjct: 118 RRGGGAGEPTAYRVGDLELDRLSHRVTRGGQEIVLQPREFRLLEYLMRHAGQVVTRTMLL 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 H++D +P+ +IDV + +LR K+ + I TV G GY++R + Sbjct: 178 EHVWDYHFDPQTNVIDVHVSRLRAKVDKGF-ERPMIHTVRGAGYMVRAGGE 227 >gi|161523860|ref|YP_001578872.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160341289|gb|ABX14375.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] Length = 225 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+S+ F V GE + +D ++LDLGL G Sbjct: 6 MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGESALTALGGESYDLLLLDLGLPKRDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR +S PV I++ +I D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 66 DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++SLI G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 126 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL G + I V G GY++ Sbjct: 186 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 221 >gi|21222423|ref|NP_628202.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|13122184|emb|CAC32360.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] Length = 271 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++++ + + L+ E + + G ++ + + DA++LD+ L D+ G Sbjct: 45 VRVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGL 104 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 105 SVLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 164 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S++V GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 165 AADRRSDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDR 224 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+K+ AG + I T G GY+++ Sbjct: 225 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 267 >gi|218438132|ref|YP_002376461.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218170860|gb|ACK69593.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 227 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 10/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-----KFYEFDAIILDLGLT 55 MRILL+ED+ L +++ K+ N Y+ D +DG E ++ E++ I+D L Sbjct: 1 MRILLVEDEPDLGEALK---KALNQKKYIVDWVQDGTEAWNCLDSQWTEYNLAIIDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G E+++ LR + S PV +L+ +EDKV GL +GADDY+ KPF EL+AR+RA+ Sbjct: 58 GMSGIELIKRLRARQNSLPVLMLTAKDQMEDKVIGLDAGADDYLVKPFGMAELLARLRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174 RRS + GDL ++ +TV QG++ + LT KE+ ++E N LT E Sbjct: 118 GRRSPQLVPQQLQRGDLILDYGTRTVFYQGNQTLSLTTKEFLLLEYFFNHPNQILTSEQI 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 N L++ +EP ++ + LR+KL KN IETV G GY Sbjct: 178 RNQLWEMGEEPMSNVVAAQVRLLRRKLE-TVDCKNVIETVHGVGY 221 >gi|220923033|ref|YP_002498335.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947640|gb|ACL58032.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 223 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD L ++ L S+ + D +D ++LDL L D G Sbjct: 1 MRILLIEDDLVLGEAVRDHLLSDGHSADWMKTVADAAAAITAAVYDLVLLDLMLPDGRGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ R TPV IL+ I D++ GL +GADDY+ KPF+ EL ARI A+ RR Sbjct: 61 DFLQHRRSLGDVTPVIILTARDQISDRIAGLNAGADDYLIKPFDLFELTARISAVGRRYS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ L+ GDL ++L A++V G + LT +E+ + E L R N L+K LY Sbjct: 121 GNPNPLVTIGDLDIDLAARSVHKGGKPVPLTAREWSLFEALIQRPNALLSKTQLEERLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E E I+V+I +LRKK+ G + IETV G GY L A+ Sbjct: 181 FDAEVESNTIEVYIGRLRKKI-----GADVIETVRGMGYRLGLPAR 221 >gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149] gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149] Length = 230 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A L+ F V V + GE G+ EFD IILDL L + GFE Sbjct: 4 RILIVEDEESIADLERDYLELSGFQVEVANDGETGLNKAMKEEFDLIILDLMLPGVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 64 ICREVRSQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLSRYER 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 123 LIGSNVEENDVIEIRGLKIDTTARRVWVNGEERSFTTKEFDLLTFLAGHPNHVYTKEELF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 183 REIWDMESVGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229 >gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] Length = 235 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L+ + F V G G+++ + + DAI+LD+ + + GF Sbjct: 9 RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGFG 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 +LR LR + PV L+ S++DK+ GL GADDY++KPF+ EE+V R+R I+RR+ R Sbjct: 69 LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGR 128 Query: 121 GHA--QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A QS V D+ ++ D + V +G + L+ E+ ++ + T L+K L+H Sbjct: 129 GVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILDH 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ EV +++ ++ LR+K+ G I T+ G GYV+RE Sbjct: 189 VWNYDFGGEVGVVESYVSYLRRKVDT--GETPLIHTLRGVGYVMRE 232 >gi|85706269|ref|ZP_01037363.1| two component response regulator [Roseovarius sp. 217] gi|85669042|gb|EAQ23909.1| two component response regulator [Roseovarius sp. 217] Length = 219 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 119/222 (53%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD L ++ + S+ V +VT L + + FD I+LDL L D G Sbjct: 1 MRILLIEDDTVLGAAVRDQIASDGQTVDWVTRL-DAAGAAVRGAAFDLILLDLMLPDGRG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 L+ALR TPV IL+ + + D++ GL +GADDY+ KPF+ EL ARI ++ RR Sbjct: 60 IGFLKALRARGEVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ ++ G L ++L A++V G + LT +E+ + E R L+K + LY Sbjct: 120 SGNPNPIVTHGPLDIDLAARSVHRGGKPVQLTAREWALFEAFLARPGQLLSKAQLEDKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V + +LRKKL G +ET G GY L Sbjct: 180 AYDAEVESNTIEVHVSRLRKKL-----GAGIVETERGLGYRL 216 >gi|325914487|ref|ZP_08176831.1| two component transcriptional regulator, winged helix family [Xanthomonas vesicatoria ATCC 35937] gi|325539257|gb|EGD10909.1| two component transcriptional regulator, winged helix family [Xanthomonas vesicatoria ATCC 35937] Length = 221 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD LA++I ++ +++ + + + A++LD+GL G Sbjct: 1 MHLLLVEDDTMLANAICDGVRQQSWTIDHVGSANAAKTALVDHRYTAVLLDIGLPGESGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR +TPV L+ + D++RGL +GADDY+ KPF +EL+AR+RAI RRS+ Sbjct: 61 TVIRFLRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAITRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ GD+ V+ ++ V G + L+ EY+++ L R +TK+ +Y Sbjct: 121 GRVVPVLSQGDVCVDPSSRKVTRAGTWVALSAHEYRLLLALMERAGRVVTKDQLEESVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E +I V++ +LR+KL G I TV+G+GY++ Sbjct: 181 GPSEGGSNMIAVYVHQLRRKL-----GDELISTVYGQGYMI 216 >gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 237 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D + + Y D I+LD+ + + G Sbjct: 6 RILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEVYAPDLIVLDIQMPRMDGLT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R LR A + P+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 66 AARRLRAAGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 125 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G + ++ DL ++L + V R+ LT E+ ++EL LT+E Sbjct: 126 ASAGPGGAEEDVLSFADLRMDLATREVTRGTRRVELTRTEFTLLELFLAHPRQVLTREQI 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + AAG + TV G GY LR + Sbjct: 186 LKAVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYALRTGGPE 237 >gi|145221487|ref|YP_001132165.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145213973|gb|ABP43377.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 251 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 122/229 (53%), Gaps = 13/229 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ LA + L+ E F V D G D I + + + D +ILD+GL I G E Sbjct: 19 RALVVDDELPLAEVVASYLEREQFEAVVADNGVDAIAVARDLDPDVVILDIGLPGIDGLE 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + V +L+ + D V GL GADDYI+KPF+ ELVARIRA++RR R Sbjct: 79 VCRQLRTFSDAY-VVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPR- 136 Query: 122 HAQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 QS T G LS+++ A+ V + +I LT E+ ++E LS R L+ Sbjct: 137 VLQSATATAGIDVAPPRRFGALSIDVAAREVRIDDEQILLTRTEFDILEALSGRPGNVLS 196 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L + DG ++DV I LR+KL + A YI TV G GY Sbjct: 197 RRQLLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGY 245 >gi|289770395|ref|ZP_06529773.1| two component system response regulator [Streptomyces lividans TK24] gi|289700594|gb|EFD68023.1| two component system response regulator [Streptomyces lividans TK24] Length = 285 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++++ + + L+ E + + G ++ + + DA++LD+ L D+ G Sbjct: 59 VRVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGL 118 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 119 SVLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 178 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S++V GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 179 AADRRSDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDR 238 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+K+ AG + I T G GY+++ Sbjct: 239 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 281 >gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 3/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD +++ + L+ E + V V+ G +E D I+LDLGL ++ G EV Sbjct: 4 VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R TPV IL+ D V GL +GADDY++KPF EL+AR+RA++R RG Sbjct: 64 ARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR--RGT 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 +++ +V G + ++ D++ + +HLT KE+ ++ +L +T+E + ++D Sbjct: 122 SETPVVQG-VRIDADSRRAWMGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LR+KL + A YI TV G G+ Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDAAKPRYITTVRGVGF 217 >gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 243 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + S+ L+ F+V V G++ + L DA++LD+ + ++ G V Sbjct: 20 VLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAV 79 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + ALR P+C+LS ++ D++ GL++GADDY++KPF+ ELVAR+ A++RR+ Sbjct: 80 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 139 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+++ + V V G R+ LT +E+ ++ +L+ L+++ L ++ Sbjct: 140 DRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVWG 199 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + DVFI LR+KL G I TV G GYVLR+ Sbjct: 200 YDFDVDTNVADVFISYLRRKLER-DGLPRVIHTVRGIGYVLRD 241 >gi|332992484|gb|AEF02539.1| response regulator [Alteromonas sp. SN2] Length = 221 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK L++++++ L+ N+ V G I + + D +ILDLGL D G Sbjct: 1 MRILLVEDDKPLSNALKVSLRKANYTVDCVYDGASAISTLRPSQNDIVILDLGLPDQDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+++R PV IL+ DK+ GL +GADDY+ KPF +EL+AR+R + RR Sbjct: 61 IVLKSIRKTNPVLPVLILTARDKTSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++S+I ++S++ T+ + +HL +E +++ L L+K + LY+ Sbjct: 121 TSSESVITVQNVSLDTKHHTLTIDSDIVHLPRRELMLLKALIENAGRILSKHQLESKLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V I LRKK+ +N+I T+ G GY + Sbjct: 181 WGEEVSSNTIEVHISNLRKKMP-----ENFIRTIRGVGYCI 216 >gi|241765175|ref|ZP_04763161.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241365180|gb|EER60041.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 221 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 123/229 (53%), Gaps = 13/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI----ELCKFYEFDAIILDLGLTD 56 MRILL EDD+ L I L F V D DG+ EL + A +LDLGL Sbjct: 1 MRILLAEDDELLGSGIRAGLGQNGFQV---DWVRDGVAAERELATG-AYQAAVLDLGLPR 56 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G +VLR +R + +TPV +L+ ++ ++ GL +GADDY+ KP + EL AR+RA+V Sbjct: 57 QDGMDVLRQMRARRNTTPVLVLTARDAVPARIAGLDAGADDYLIKPIDLHELAARLRALV 116 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RR+ G +++ + G++ ++ A V V G + L+ +EY ++ L L L++E Sbjct: 117 RRAHGQSETRLAAGNVVLDPAAHQVLVDGQPVDLSNREYDLLHALLLNAGRVLSREQLEQ 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LY+ E ++V I LR+KL G IETV G GY + +A Sbjct: 177 RLYEWGSEINSNAVEVHIYHLRRKL-----GTPLIETVRGVGYRIARDA 220 >gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis PR4] gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis PR4] Length = 243 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L+ + F V G G+++ + + DAI+LD+ + + GF Sbjct: 17 RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGFG 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 +LR LR + PV L+ S++DK+ GL GADDY++KPF+ EE+V R+R I+RR+ R Sbjct: 77 LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGR 136 Query: 121 GHA--QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A QS V D+ ++ D + V +G + L+ E+ ++ + T L+K L+H Sbjct: 137 GVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILDH 196 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ EV +++ ++ LR+K+ G I T+ G GYV+RE Sbjct: 197 VWNYDFGGEVGVVESYVSYLRRKVDT--GETPLIHTLRGVGYVMRE 240 >gi|254483612|ref|ZP_05096835.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] gi|214036121|gb|EEB76805.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] Length = 222 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 126/220 (57%), Gaps = 7/220 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD L S+E L+ E++ V GE +D +ILDLGL ++PG Sbjct: 5 LRILLVEDDVQLGESLEAALRLEHYAVDWLRSGEPVRATIGATPYDLMILDLGLPEVPGI 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119 +VLR R K PV +L+ ++++DKV GL SGADDY++KPF +EL AR+R ++ RR Sbjct: 65 QVLRQTRADKHDIPVLLLTARNTLDDKVDGLDSGADDYLTKPFEIDELFARVRTLLRRRG 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +Q L G ++++ + V +G + LT +EY ++E+L +++ +Y Sbjct: 125 EGRSQQLEARG-ITIDPVDRLVIFEGEMLDLTAREYAILEILIRNAGRFVSRPRLEEGIY 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E ++V+I +LRK+ G + IET+ G GY Sbjct: 184 SWGEEVGSNTVEVYISRLRKRF-----GSDCIETMRGVGY 218 >gi|303234960|ref|ZP_07321584.1| putative KDP operon transcriptional regulatory protein KdpE [Finegoldia magna BVS033A4] gi|302493815|gb|EFL53597.1| putative KDP operon transcriptional regulatory protein KdpE [Finegoldia magna BVS033A4] Length = 242 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 138/241 (57%), Gaps = 15/241 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 RIL+IEDD+A+ + I LK FN DLG +G E + ++D + +DLGL DI Sbjct: 6 RILIIEDDRAVRNLISNTLKINRFNY---DLGVNGSEALLLFTTNKYDIVFVDLGLPDID 62 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G ++++ R +TP+ ++S S+ EDK+ L +GADD+++KPFN +EL+AR+R+ +RR Sbjct: 63 GIDLIKKFREFS-TTPIIVISARSNDEDKIEALDAGADDFLTKPFNVDELLARVRSTIRR 121 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +R + GD+ ++ +++V V+G IHL EY ++ LLS LT + Sbjct: 122 LNYSENNRIDNNVIFENGDIKIDYPSRSVFVKGEEIHLMPIEYSLLCLLSKNIGKVLTHQ 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKDETCE 231 L ++ + ++ + V++ LRKK+ + K YI+T G GY ++R N D + Sbjct: 182 YILKTIWVNYLDSDLSSLRVYMTSLRKKIEKVSCEK-YIQTHIGVGYKMIRVNKSDSEKK 240 Query: 232 Y 232 Y Sbjct: 241 Y 241 >gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 229 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + ++ D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEALDTFDRNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R+LR + + PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR +G Sbjct: 63 VCRSLR-QRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRR-QG 120 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + L + G + +++D V V+G ++ L KE++++E+L LT+ ++ Sbjct: 121 DVEELESAVLAAGPVRMDVDRHIVAVRGQQVQLPLKEFELLEVLLRNAGRVLTRGQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ + I TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKVESDPSNPRCILTVRGLGY 222 >gi|212633628|ref|YP_002310153.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212555112|gb|ACJ27566.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 224 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L + LK + TD + L K +D +ILD+GL D G Sbjct: 1 MKLLLVEDNTLLVEELLKQLKQAGYVTDTTDKISEADYLIKETNYDCVILDIGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R I TPV +L+ S +KV G SGADDY+ KPF+ +EL+ RI+A+++R+ Sbjct: 61 ELLERWREQGIHTPVIMLTARSQWHEKVEGFNSGADDYLGKPFHTQELLVRIQALIQRAH 120 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A + + ++++ ++V V + LT E++++++ + L+K + Sbjct: 121 GKANTPNKQLTYAGVALDESQQSVTVADNTFELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220 >gi|157963325|ref|YP_001503359.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157848325|gb|ABV88824.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 224 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L + LK + TD + L K +D +ILD+GL D G Sbjct: 1 MKLLLVEDNTLLVEELVKQLKQAGYVTDSTDKVSEADYLIKETNYDCVILDIGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L + R I TPV +L+ S +KV G SGADDY+ KPF+ +EL+ RI+A+++R+ Sbjct: 61 ELLESWREQGIHTPVIMLTARSQWHEKVEGFNSGADDYLGKPFHTQELLVRIQALIQRAH 120 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A + + ++++ ++V V LT E++++++ + L+K + Sbjct: 121 GKANTPNKQLTYAGVALDEGQQSVTVGEQTFELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220 >gi|39998037|ref|NP_953988.1| DNA-binding heavy metal response regulator [Geobacter sulfurreducens PCA] gi|39984982|gb|AAR36338.1| DNA-binding heavy metal response regulator [Geobacter sulfurreducens PCA] gi|298506979|gb|ADI85702.1| winged-helix heavy metal transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 223 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+K A ++ F G+DG+ L + +D IILD+ L G+ Sbjct: 1 MRVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLARTENYDLIILDIMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR PV LS ++ D+VRGL+ GADDY+ KPF EL+AR R I+RR Sbjct: 61 EVLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTILRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L +G I LT KE+ ++ LL RK L++ + ++ Sbjct: 121 SRQPERLRADDLEMDLVGHKARREGRPIDLTAKEFILLSLLLRRKGEVLSRTLIAEQVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+DV I +LR+K+ + + I TV G GYVL Sbjct: 181 INFDSDTNIVDVAIRRLRRKVDDPF-ERKLIHTVRGAGYVL 220 >gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 228 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 135/228 (59%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I+ L+ E + V GE+ + K ++D ++LD+ L G + Sbjct: 4 KILVVDDEKLIVKGIKFSLEQEGWEVDAAYDGEEALNYVKNNKYDVMLLDVMLPKYDGLQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDY++KPFN EL ARI+AI+RRS+ Sbjct: 64 VCQLVREFS-NIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAILRRSQ- 121 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 HA+ + I G+L + ++++ V ++ ++LT KE+ M+EL + +++ L+ Sbjct: 122 HAEKVPNKKTIEVGELRLEVNSRRVFIKNQEMNLTAKEFDMLELFATHPGKVYSRDQLLD 181 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ GR+ P +V+ +DV + +LR+K+ G YI T WG GY ++ Sbjct: 182 TIW-GREYPGDVRTVDVHVRRLREKIEPNPGQPEYIYTKWGVGYYFKD 228 >gi|296162888|ref|ZP_06845668.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295886859|gb|EFG66697.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 220 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +E L+ V G + + E++ ++LDLGL + G Sbjct: 1 MRVLLVEDDDLIGSGVEEGLRDAGMTVDWAHDGREAMLALTTTEYELVVLDLGLPKLSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + TPV +++ ++ D+V GL +GADDY+ KPF+ EL+AR RA++RR+ Sbjct: 61 ELLDWLRGRRDDTPVLVMTARDTVADRVGGLTAGADDYLGKPFDLTELIARCRALLRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I DLSV+ TV G R LT +E ++ L + T L++ LY Sbjct: 121 GRSVETIEYQDLSVDPSTFTVTRNGLRQPLTSRECAVLVELLTHQGTPLSRARLEESLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E E I+V + LRKKL G I T+ G GYV+ + + Sbjct: 181 WQEEVESNAIEVHVSNLRKKL-----GPGLIRTIRGVGYVVEKTS 220 >gi|260599895|ref|YP_003212466.1| transcriptional regulatory protein YedW [Cronobacter turicensis z3032] gi|260219072|emb|CBA34427.1| Probable transcriptional regulatory protein yedW [Cronobacter turicensis z3032] Length = 226 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 133/229 (58%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ +E L+ V G DG+ L +++ IILD+ L + G+ Sbjct: 1 MKLLLIEDNDKTRAWLEKGLREAGLVVDAVADGRDGLHLALEHDYALIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR AK +TPV L+ ++ D+V+GL+ GADDY+ KPF+ EL+AR+RA +RR Sbjct: 61 QVLRALRTAK-ATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHT 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +L V DL+++ G RI LT +E+ ++ LL+ R L + + + ++ Sbjct: 120 PAAATLQV-ADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + E ++DV I +LRKK+ + K IETV G GY R NA +++ Sbjct: 179 INFDSETNVVDVAIRRLRKKIDDPFPLK-LIETVRGMGY--RLNAPEQS 224 >gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA IEL LK E + V V + G G+ + D I+LD L I G ++ Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ I D+V GL +GADDYI KPFN EEL+AR+RA +RR+ Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L+ DLS+N + + V I LT KE+ ++E L L+++ L ++ Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL A K I+TV G GYVLR+ Sbjct: 186 FMGDSNIIEVYVRYLRLKLE-AEQEKRLIQTVRGVGYVLRD 225 >gi|116494259|ref|YP_805993.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191637593|ref|YP_001986759.1| Two-component system regulator [Lactobacillus casei BL23] gi|239629641|ref|ZP_04672672.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065765|ref|YP_003787788.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116104409|gb|ABJ69551.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190711895|emb|CAQ65901.1| Two-component system regulator [Lactobacillus casei BL23] gi|239528327|gb|EEQ67328.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438172|gb|ADK17938.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381643|gb|AEA53119.1| Two component transcriptional regulator, winged helix family [Lactobacillus casei LC2W] gi|327384810|gb|AEA56284.1| Two component transcriptional regulator, winged helix family [Lactobacillus casei BD-II] Length = 231 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 134/230 (58%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+IEDD L SI +++ F L G DG+ L + FDAIILD+ L ++ GF Sbjct: 6 RILVIEDDPDLNESITDFIRA--FADPEAALNGADGLYLAEEGIFDAIILDIMLPELNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +I TPV IL+ ++ DK+ G + G DDY++KPF++EEL+ R++A+++R+ Sbjct: 64 DVLKKLRAKQIKTPVLILTAKDALTDKLHGFELGGDDYLTKPFHREELIMRLKALLKRT- 122 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GH + G V++ + V + + L GKE+ ++ L + T +TK+ + L Sbjct: 123 GHFFDDDGLTAGPFVVHVTSHEVLINDQPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + E V +++V++ LRKKL +++I+T+ GY+ +E E Sbjct: 183 WGFDSETAVSVVEVYMSNLRKKLK-PLKVEHWIKTIRNVGYIFQEPEGSE 231 >gi|254423297|ref|ZP_05037015.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190786|gb|EDX85750.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 685 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ L ++ L+ + + V D G G+E + +D +++D+GL + G Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR +TP+ +++ + ++K+RGL +GADDY++KP + EL AR+RA++RR Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ G L ++ + V + LT KEY ++EL + ++ + HL+ Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D P + + LR++L AG +IE V+G GY L Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQ-AGADGWIENVYGMGYKL 220 >gi|331701040|ref|YP_004397999.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329128383|gb|AEB72936.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 230 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 134/230 (58%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+IEDD+ LA S++L L E V+ G +G L + +D ++LDL L + G+ Sbjct: 4 LHILIIEDDEDLAKSLQLFL-GEIAQTTVSHDGFEGQMLGQEGIYDLVVLDLMLPQVSGY 62 Query: 61 EVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++L+ R +S PV IL+ +++DKV G + GADDY++KPF++EEL+ R++A+++RS Sbjct: 63 DILKHWRTEDHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALLKRS 122 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 GH + + G VNL + VEV G + L GKE+ ++ +T +TK+ + Sbjct: 123 -GHLGDDNTLSVGPFKVNLSNRIVEVNGKELALNGKEFDLLVYFIQNPDTIITKDQIFDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L+ E + +++V++ LRKK+ ++ + I+T+ GY+ D Sbjct: 182 LWGFESETAISVVEVYMSNLRKKIKQSSSLQP-IKTLRNVGYMFETEESD 230 >gi|266619520|ref|ZP_06112455.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288868930|gb|EFD01229.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 236 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 13/228 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A I L L E F + + GE+ + + ++ + ++LDL L + G+ Sbjct: 6 RILIVDDDNNIAELISLYLTKECFETIIVNDGEEALRVFPEFKPNLVLLDLMLPGMDGYS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R A+ P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREMR-AQSPVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124 Query: 121 ----GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 AQ+ + DL VNL +V GH I + KE +++ L+ N T+ Sbjct: 125 PAVPAAAQTDQQGDYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L+H++ + + +DV I +LR+K+ + A + TVWG GY Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHASWA--LTTVWGIGY 230 >gi|157377522|ref|YP_001476122.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319896|gb|ABV38994.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 225 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ILL+EDD A +IE ++K + N+ G G+ L ++D +ILD L + Sbjct: 1 MKILLVEDD---ATTIEYVVKGFMEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R +++ Sbjct: 58 DGLKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117 Query: 118 RSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R A + + G+L + L + V + G + L KE+Q+++ L N +++ + Sbjct: 118 RGFSQPADTELSVGNLVMELLTRKVTLDGTELMLQPKEFQLLKYLMEHPNQVISRTLLFE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGFGE-LIETVRGAGYRLRQG 224 >gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 245 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ ALA + + L+ E + V G + I + + DA++LD+ L D+ G Sbjct: 20 VRVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRITRELRPDAVVLDVMLPDMDGL 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 80 TVLGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSG 139 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A +S++ GDL ++ D+ V G IHLT E++++ L L+K L+ Sbjct: 140 AAAARSESVLAVGDLILDEDSHEVSRGGREIHLTATEFELLRYLMRNPRRVLSKAQILDR 199 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++++I LR+K+ AG I T G GY+++ Sbjct: 200 VWSYDFGGQANVVELYISYLRRKID--AGRSPMIHTRRGAGYLIKPG 244 >gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 230 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 129/227 (56%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +E K ++D I+LDL L + G E Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVEKAKDKKYDIILLDLMLPKMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIREFS-NVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAGS 122 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + A+S+ V GDL ++ + + V + G I+LT KE+ ++ELL N ++E L Sbjct: 123 DHEEKEKAKSIQV-GDLRMDCEGRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 182 NIVWGYEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYFQ 228 >gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 233 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 129/227 (56%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +IL+++DDK + + I + L++E T ED IE K E FD IILD+ + ++ Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIEALKLLEEKKFDLIILDVMMPNMD 65 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 66 GIEVCMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124 Query: 119 SRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +S++ GDL+VN D + V V+G + LT KE+ +++LL+ K L+ Sbjct: 125 FKKYNMHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVA 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 185 KIYEAVWKDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 231 >gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] Length = 228 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 126/230 (54%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LLI+DD L + L+ F V V G G+ FDA++LD+ + + G Sbjct: 3 LRLLLIDDDTRLHALLASYLEQNGFAVTVACDGARGLLALAAGTFDAVLLDVMMPGMDGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R K S P+ +L+ D+V GL+ GADDYI+KPF+ EL+AR+RA++RR+ Sbjct: 63 EVVRRIR-QKSSMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVLRRAT 121 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A IV GD+++++ + V V G LTG E+ ++ L+ R + +E L Sbjct: 122 PDAAGERIVAGDIAIDVPGRVVTVSGKPTDLTGIEFDILVALARRAGRVVAREALLEEAG 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G + +DV I LR+KLS+ I+TV G GYVL AKD Sbjct: 182 RGDVNVGGRTVDVHISHLRQKLSDDPRSPRLIKTVRGVGYVL---AKDRV 228 >gi|41407093|ref|NP_959929.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466690|ref|YP_880417.1| KDP operon transcriptional regulator KdpE [Mycobacterium avium 104] gi|254774017|ref|ZP_05215533.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium avium subsp. avium ATCC 25291] gi|41395444|gb|AAS03312.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167977|gb|ABK68874.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium avium 104] Length = 226 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D+ + ++ + L + V G + ++ D +ILDLGL DI G + Sbjct: 3 RVLVIDDEPQILRALRINLSVRGYEVVTASTGAGALRAAAEHKPDVVILDLGLPDISGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR ++ PV +LS + DKV L +GADDY++KPF +E +AR+RA VRR+ Sbjct: 63 VLAGLR-GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q ++ T +V+L AK V G +HLT E+ M+E+L + + +E L + Sbjct: 122 ASEMEQPVVETESFTVDLAAKKVTKNGSEVHLTPTEWGMLEVLVRNRGKLVGREELLKEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + V++ +LR+KL N ++ T G GY Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLENDPSHPKHLLTESGMGY 222 >gi|21244692|ref|NP_644274.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|294626751|ref|ZP_06705346.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|21110381|gb|AAM38810.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|292598999|gb|EFF43141.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 221 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD LA++I ++ +++ + + + + A++LD+GL G Sbjct: 1 MHLLLVEDDTMLANAICDGVRQQSWTIDHVGHANAAKTVLVDHRYSAVLLDIGLPGESGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R +R +TPV L+ + D++RGL +GADDY+ KPF +EL+AR+RA+ RRS+ Sbjct: 61 SVIRFMRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAVTRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L+ GD+ ++ ++ V G + L+ EY+++ L R +TK+ +Y Sbjct: 121 GRVVPLLSHGDVCMDPSSRKVTKDGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E +I V++ +LR+KL +A I TV+G+GY++ Sbjct: 181 GPSEGGSNMIAVYVHQLRRKLGDA-----LISTVYGQGYMV 216 >gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 230 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G D +E + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDALEQFERNGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LRV + + PV +++ S DKV GL+ GADDY++KP++ ELVARIRA++RR Sbjct: 63 VCRQLRV-RSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVLRRRGE 121 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + G + +++D V V G ++ L KE+ ++E+L LT+ Sbjct: 122 DGGADGAAAPGALEAGPVRMDVDRHVVTVDGAKVDLPLKEFDLLEMLLRNAGRVLTRMQL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 IDRVWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 226 >gi|289425716|ref|ZP_06427471.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289153822|gb|EFD02528.1| response regulator receiver domain protein [Propionibacterium acnes SK187] Length = 243 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L +ED+ +L + + ++ E ++V + G + + D I+LD+ L+D G Sbjct: 18 IRVLAVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV+R +R+ + + L+ + ++ GL +G DDY++KPF+ EE++AR+RA++RRS Sbjct: 78 EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSG 137 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S++ GDL+++ D++ V G IHLT E++++ L+K L+ Sbjct: 138 ATEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ G K I T+ G GYVL+ Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHKPMIHTMRGAGYVLK 240 >gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 225 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ L + L++E F V V G DG+ + + + +DAI+LD+ + + G+ Sbjct: 1 MRILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRYDAIVLDIMMPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A+ TP+ +L+ D+V L +GADD++SKPF+ LVAR+R++VRR Sbjct: 61 TVCERLRAAEDWTPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++ A+ V I LT +E+ ++E L ++K L++++D Sbjct: 121 RERPVVLEAGDLQLDPAARRVRRGDVEIELTSREFAVLEFLIRNAGDVVSKRQVLDNVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + I++V++ LR K+ G+ IET+ G GY L Sbjct: 181 GDFEGDPNIVEVYVRHLRNKVDRPF-GRASIETLRGAGYRL 220 >gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1] gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1] Length = 255 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ +L+ + + L+ E V G + + + D ++LD+ L D+ G Sbjct: 28 RVLVVDDEASLSELLSMALRYEGCEVRSAGDGAGAVRAARGFRPDVVVLDIMLPDMDGLA 87 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR PV L+ S+ED++ GL +G DDY++KPF+ EE+VAR+R +VRRS G Sbjct: 88 VLGQLRREIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRS-G 146 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 AQ S++ GDL ++ D+ V G +HLT E++++ L L+K L+ Sbjct: 147 AAQAARGGSVLAVGDLRLDEDSHEVTRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILD 206 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+KL G I T G GY+++ Sbjct: 207 RVWSYDFGGQANVVELYISYLRRKLEAGTGLPPMIHTRRGAGYLIK 252 >gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 135/226 (59%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + I+ L+ F+V +D GE+ IEL K + D I+LDL L I G EV Sbjct: 6 ILVVDDEEHIIELIKFNLEKNGFSVLTSDNGEESIELVKNNDVDLIVLDLMLPGIDGIEV 65 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R TP+ +L+ M D++ GL+ GADDY++KPF+ ELVARI+A++RRS Sbjct: 66 CKRIRRMDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLRRSE 125 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q++ +V DL ++ + V ++ I LT KE++++ +L+ + L++ + L+ Sbjct: 126 -EKQTVRAIKLVVKDLMIDTEKHEVRIKDQPIELTLKEFELVRILAENRGKVLSRNLLLD 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E + +DV I LRKK+ + G+ YIET+ G GY ++ Sbjct: 185 EVWGYDYFGETRTVDVHIRHLRKKIGDDQSGE-YIETIRGVGYKMK 229 >gi|319794725|ref|YP_004156365.1| two component heavy metal response transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315597188|gb|ADU38254.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 225 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 134/228 (58%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL+IED+ L ++ L+ N YV D+ DGIE L E+ ++LD+ L I Sbjct: 1 MRILVIEDEPKLGDYLKKGLEE---NGYVVDIARDGIEGRYLATEGEYALVLLDVMLPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VL+A+R K + PV +L+ +ED+V+GLQ GADDY+ KPF+ EL+AR++A++R Sbjct: 58 DGFTVLQAIRRTK-NVPVLVLTARDKVEDRVQGLQQGADDYLVKPFSFSELLARVQALLR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + +++ DL +++ ++ V R+ LT KE+ ++ +L R+ L++ Sbjct: 117 RGKAQDSTVLRLADLELDMASRKVFRNRVRLDLTAKEFTLLVVLLRRRGQILSRTTLAEQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D + + +++V I +LR K+ + K + TV G GYVL + + Sbjct: 177 VWDMNFDSDTNVVEVAIRRLRSKIDDPFEVK-LLHTVRGMGYVLEDRS 223 >gi|163855906|ref|YP_001630204.1| two-component transcriptional regulator [Bordetella petrii DSM 12804] gi|163259634|emb|CAP41935.1| two-component transcriptional regulator [Bordetella petrii] Length = 235 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60 R L++EDD A I LK ++ +T G ++ +DAIILD L D+ G Sbjct: 3 RCLIVEDDADNARYIANGLKELGYDPVITMDGPTALQRATTEHWDAIILDRMLPNDVDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +L +LR TPV +LS +++++++VRGL++G DDY++KPF EL AR+ A++RR S Sbjct: 63 SILWSLRALGRKTPVLVLSALTALDERVRGLKAGGDDYLTKPFAFPELAARVEALIRRSS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ + + DLS++L + V G I L +EY+++ + LT+ M L ++ Sbjct: 123 SGYERRQLTVADLSLDLVSGQVARGGRAITLQPREYKLLAYMMNNAGQVLTRTMLLATVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +P+ +IDV I +LR+K+ + G I TV G GY L A Sbjct: 183 GYHYDPQTNVIDVHISRLRQKI-DGPGEAPLIHTVRGVGYRLSAQA 227 >gi|94986314|ref|YP_605678.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94556595|gb|ABF46509.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 220 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A L+ + V G G+E E+ I+LD+ L + GF Sbjct: 1 MRLLLVEDDPRIAEPTLEALREAGYAVTWRQTGPAGLEEALLGEYPLIVLDVMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR A ++ + L+ +ED+V+GL G D Y+ KPF EL+A +RA+ RR R Sbjct: 61 AVARELRAANVAGAILFLTARGELEDRVQGLDLGGDAYLVKPFAVPELLATLRALTRRER 120 Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + LD A+TV G + +TG+EY ++E+L L + T+E L+ + Sbjct: 121 GQGAPRVAFAGGRGRLDTVARTVTWDGEEVAVTGREYALLEVLVLSPDRWFTREELLDRV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E +I+DV++ LR+KL+ A + + GRGY Sbjct: 181 WGPEFGGEARIVDVYVRYLRRKLAPEA-----VSSERGRGY 216 >gi|256786375|ref|ZP_05524806.1| two-component systen response regulator [Streptomyces lividans TK24] gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans TK24] gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans TK24] Length = 248 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 11/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E ++ V G D +E Y D ++LD+ + + G Sbjct: 16 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGLT 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 76 AARRIRGAGDLTPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS-S 134 Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +A ++ T DL+++L + V G + LT E+ ++E+ LT+E Sbjct: 135 YAAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTRE 194 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ Sbjct: 195 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQG 245 >gi|226312004|ref|YP_002771898.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094952|dbj|BAH43394.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 238 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 132/230 (57%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ ENF + D GE +E+ ++D I+LDL L + G E Sbjct: 6 RILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDYDIILLDLMLPGMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K +TP+ +L+ ++V G ++G DDY+ KPF+ E++ R++AI+RRS Sbjct: 66 VCQRVREFK-ATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAILRRSSA 124 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A S++V +L+++ DA V G + LT KEY+++ L+L + T+E Sbjct: 125 TAYLKTETFNSHSVLVFPELTIDHDAHKVIASGQEVSLTPKEYELLHYLALSPDKVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221 L ++ +++ +D I +LR+KL+ + N I TVWG GY L Sbjct: 185 ELLKDVWHYEFFGDLRTVDTHIKRLREKLNRVSPQAANMIATVWGVGYKL 234 >gi|295107699|emb|CBL05242.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 230 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 124/224 (55%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++AL +I L++ ++V G++ ++L FD ++LDL L I G Sbjct: 7 MRILIVEDERALCDAIARSLRNLAYSVDCCHDGQEALDLLGVEVFDLVVLDLNLPRIDGM 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ALR T V ILS + DKV GL +GA+DY++KPF+ +EL ARIR++ R Sbjct: 67 TVLKALRKTDRETKVLILSARGKVFDKVTGLDAGANDYLTKPFHLDELAARIRSLTLRRF 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G LS + A+ V G + LT KE ++E L L + +++E + H++D Sbjct: 127 AQDNIVLTCGKLSFDTKARIASVGGEALSLTRKETGILEYLMLNQGRPVSQEELIEHVWD 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 V I LRKKL +A G + I G GYV+ ++ Sbjct: 187 SSVNSFSNATRVHISSLRKKLRSAL-GYDPIRNRIGEGYVMEDS 229 >gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 246 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + L+ E + V G + + + + DA+ILD+ L D+ G Sbjct: 21 VRVLIVDDEAPLAELLSMALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVMLPDMDGL 80 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 81 TVLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 140 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++S +V GDL ++ D+ V IHLT E++++ L L+K L+ Sbjct: 141 TAVARSESTLVVGDLVLDEDSHEVSRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDR 200 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + +++++I LRKK+ AG I T G GY+++ Sbjct: 201 VWNYDFGGQANVVELYISYLRKKID--AGRSPMIHTRRGAGYLIKPG 245 >gi|87199616|ref|YP_496873.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135297|gb|ABD26039.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 228 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 121/220 (55%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD A I L E F V G +G+ + + + I+LD L + G Sbjct: 4 KILLVEDDADTAAFIVGGLAEEGFVVDRARDGREGLFMGTDHTYQCIVLDRMLPGLDGMA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL ALR A + TPV ILS + + ED++ GL GADDY++KPF EL+ARIR +VRR G Sbjct: 64 VLAALRGAGVHTPVIILSALGATEDRITGLTRGADDYLAKPFAFAELLARIRLLVRRGSG 123 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ + GDL ++L ++ V I L +E++++E L + +T+ M L ++ Sbjct: 124 APTEQTKLSCGDLEMDLLSRRVRRGARAIDLQPREFRLLEFLLRHADQVVTRTMLLEGVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P +IDV I +LRKK+ + TV G GY Sbjct: 184 DYHFDPGTNVIDVHISRLRKKIDEGE-VVALLHTVRGAGY 222 >gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 237 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 14/229 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E + + GE+ +++ ++ + I+LDL L + G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECYETKIVGDGEEALKVFPVFKPNLILLDLMLPGMDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCRELRSSS-QVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 122 HAQSLIVTG-----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 Q G DL VNL +V GH I + KE +++ L+ N T Sbjct: 125 APQPQEPAGPDQKGQYVEFPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E L+H++ + + +DV I +LR+K+ + K + TVWG GY Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHE--KWALTTVWGIGY 231 >gi|157372224|ref|YP_001480213.1| two component transcriptional regulator [Serratia proteamaculans 568] gi|157323988|gb|ABV43085.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 220 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 127/228 (55%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTD--LGEDGIELCKFYEFDAIILDLGLTDI 57 MRILLIEDDK + I+ L FN+ + TD +G++ +E + DA+ILDL L + Sbjct: 1 MRILLIEDDKLIGDGIKAGLTRLGFNLDWFTDGLVGKNALESAPY---DAVILDLSLPGL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++LR R A PV IL+ ++E +V GLQSGADDY+ KPF E+ AR++A++R Sbjct: 58 DGLDLLRQWRQAGHDVPVLILTARDALEQRVSGLQSGADDYLCKPFALTEVAARLQALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +V G++ + ++V G + LT +E ++EL K L + + Sbjct: 118 RRHGQLMPQLVHGNVVFDTATRSVSCNGEPVTLTPRELAVLELFLHNKGRVLARPLIQEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LY+ DE ++V I LR+KL N +I T+ G GY L +NA Sbjct: 178 LYNWDDEVSSNAVEVHIHHLRRKLGNG-----FIRTIHGVGYTLGDNA 220 >gi|328544198|ref|YP_004304307.1| Two component transcriptional regulator, winged helix family [polymorphum gilvum SL003B-26A1] gi|326413941|gb|ADZ71004.1| Two component transcriptional regulator, winged helix family [Polymorphum gilvum SL003B-26A1] Length = 219 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 119/222 (53%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD L ++ + ++ +V +VT L G + +D I+LDL L D G Sbjct: 1 MRILLIEDDTVLGAAVRDQVAADGHSVDWVTRLDAAGDAMIG-TAYDLILLDLMLPDGRG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 L++LR TPV IL+ + + D++ GL +GADDY+ KPF+ EL ARI ++ RR Sbjct: 60 IGFLKSLRARGDVTPVMILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ ++ G L ++L A+++ G + LT +E+ + E R L+K LY Sbjct: 120 SGNPNPIVTHGPLEIDLAARSIRRDGKPVQLTAREWALFEAFVSRPGQLLSKTQLEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V + +LRKKL G IET G GY L Sbjct: 180 AFDAEVESNTIEVHVSRLRKKL-----GPQVIETERGLGYRL 216 >gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + ++L + EFD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKVEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 64 ACMKIREDR-NIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S H +S++ GDL+VN D + V ++G LT KE+ ++ELL+ K L+ Sbjct: 123 YNSSIEHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + V I K+R K+ + YI+TVWG GY Sbjct: 183 EAVWEEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226 >gi|257790535|ref|YP_003181141.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257474432|gb|ACV54752.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 224 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 124/224 (55%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++AL +I L++ ++V G++ ++L FD ++LDL L I G Sbjct: 1 MRILIVEDERALCDAIARSLRNLAYSVDCCHDGQEALDLLGVEVFDLVVLDLNLPRIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ALR T V ILS + DKV GL +GA+DY++KPF+ +EL ARIR++ R Sbjct: 61 TVLKALRKTDRETKVLILSARGKVFDKVTGLDAGANDYLTKPFHLDELAARIRSLTLRRF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G LS + A+ V G + LT KE ++E L L + +++E + H++D Sbjct: 121 AQDNIVLTCGKLSFDTKARIASVGGEALSLTRKETGILEYLMLNQGRPVSQEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 V I LRKKL +A G + I G GYV+ ++ Sbjct: 181 SSVNSFSNATRVHISSLRKKLRSAL-GYDPIRNRIGEGYVMEDS 223 >gi|282896786|ref|ZP_06304792.1| manR (Two component Transcriptional regulator, Winged helix family) [Raphidiopsis brookii D9] gi|281198195|gb|EFA73085.1| manR (Two component Transcriptional regulator, Winged helix family) [Raphidiopsis brookii D9] Length = 236 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D+ L + +L E + V +T G+ G EL + +D +ILD L + G Sbjct: 1 MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR + PV L+ +++D+V+GL +G DDY+ KPF EL+AR+RA++RRS Sbjct: 61 EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 120 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + GDL ++++ + QG I L+ KE Q+++ L LT + H Sbjct: 121 VDSYTTTGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYLMENPEQLLTHGQIMQH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ G PE +I I LR+K+ G I TV+G+GY Sbjct: 181 LWKGEKPPESNVIAALIRLLRRKIE-LGGESTLIHTVYGKGY 221 >gi|91783748|ref|YP_558954.1| two component transcriptional regulator QseB [Burkholderia xenovorans LB400] gi|91687702|gb|ABE30902.1| Putative QseB, two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 223 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +E L+ F V T G + ++LDLGL + G Sbjct: 5 MRVLLVEDDDLIGCGVEAGLRQAGFTVDWTRDGHKAGLALDTTVYALVVLDLGLPRVSGM 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R + PV +L+ ++ D+V GL++GADDY+ KPF+ EL+AR RA++RR++ Sbjct: 65 ELLKRVRDSGKDVPVLVLTARGTVADRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQ 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I DL+VN A+TV+V R+ LT +E+ ++ L + ++ LY Sbjct: 125 GRSVEQIRYLDLTVNPAAQTVDVGTRRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E E I+V + LRKKL G I+TV GYV+ Sbjct: 185 WQEEIESNAIEVHVSNLRKKL-----GAKLIKTVRNIGYVV 220 >gi|266620348|ref|ZP_06113283.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM 13479] gi|288868060|gb|EFD00359.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM 13479] Length = 229 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 126/229 (55%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK L ++ + L+ + V G+D + Y +D IILD L + G Sbjct: 1 MRILLVEDDKVLCSTVAMQLEQAGYQVDQCCRGDDALYYATEYPYDVIILDRMLPSLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +L+A+R I TPV I + + + D++ GL +GADDY+ KPF EEL+ARIRA+ RR Sbjct: 61 SLLQAIRQKSIMTPVIITTALDGLGDRIDGLDAGADDYLVKPFAVEELLARIRAVTRRPG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEV-----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R + + G+LS LDA E+ + + L+G+E ++E L TL + Sbjct: 121 RTADTASLAVGNLS--LDAVKHELTRNGAESETVTLSGRESSLLEYLMRNAGRTLPRNAI 178 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L++++ E E +D +I LR++L + G I+TV G GY L E Sbjct: 179 LSYVWGPDSEVEAGNLDNYIYFLRRRLKSLHGNAK-IQTVHGVGYRLEE 226 >gi|256421617|ref|YP_003122270.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256036525|gb|ACU60069.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 227 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 129/221 (58%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LA SI L+ E + V+ + + +++D ++LD+ L D G Sbjct: 1 MKVLLVEDNMELAGSISNFLEKEGYLCEVSYTSSEAYDKLSGFQYDCVLLDITLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ + + KI + V I+S +S++DK+ GL+ GADDY++KPF+ EL AR+RAI RR + Sbjct: 61 ELLQFMHLEKIDSCVLIISAKNSLDDKISGLEGGADDYLTKPFHLPELHARLRAIFRRKK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ ++++N D V R+ +T KE+ ++ + KN L+++ HL+ Sbjct: 121 LQGSNIVSFNEITLNTDTLEASVNEIRLDVTPKEFDLLLYFLVNKNRVLSRQSIAAHLWG 180 Query: 181 GRDEPEVKIIDVF--ICKLRKKLSNAAGGKNYIETVWGRGY 219 + V+ + LRKK+ +AA G +YI TV+G GY Sbjct: 181 DYTDNLANFDFVYQHVKNLRKKI-HAAEGADYINTVYGLGY 220 >gi|226194918|ref|ZP_03790509.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|225932723|gb|EEH28719.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] Length = 231 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 132/236 (55%), Gaps = 15/236 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD LA I L S F+V V G+ + + ++ +ILDL L + G EV Sbjct: 1 MLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGMEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R A + PV IL+ S + D+V GL++GADDY++KP LVAR RA++RR + Sbjct: 61 CRRIR-AFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQPG 119 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A +V G+L+++ +TV +G + L E+ ++ +L+ T L+++ L Sbjct: 120 ASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDILK 179 Query: 177 HL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L +DG D + +D I KLR++ +A+ + I+T+WGRGY+ +A D+ Sbjct: 180 QLRGIEFDGID----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 231 >gi|262342066|gb|ACY54553.1| putative transcriptional regulatory protein PhoP [Pseudomonas syringae pv. syringae] Length = 194 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/191 (37%), Positives = 109/191 (57%), Gaps = 1/191 (0%) Query: 33 GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92 E+ + + D ++DLGL I G +++R LR + P+ IL+ + +DKV GL Sbjct: 2 AEEALYQVAQFNHDLAVIDLGLPGIGGLDLIRQLRTLGKAFPILILTARGNWQDKVEGLA 61 Query: 93 SGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTG 152 +GADDY+ KPF EEL AR+ A++RRS G QS I G L ++L+ K + + LT Sbjct: 62 AGADDYVVKPFQFEELEARLNALLRRSSGFIQSTITAGPLLLDLNRKHAALAEQPLALTA 121 Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212 EY+++E L L + KE + LY DE + +I+V + +LR+KL ++ K IE Sbjct: 122 YEYRILEYLMLHHQQVVPKERLMEQLYPDDDERDPNVIEVLVGRLRRKLDSSVAFKP-IE 180 Query: 213 TVWGRGYVLRE 223 TV G GY+ E Sbjct: 181 TVRGMGYLFNE 191 >gi|299532441|ref|ZP_07045833.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|298719679|gb|EFI60644.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 238 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 127/233 (54%), Gaps = 6/233 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +A + L L+ E V G+DG+ + +DA++LDL L + G E Sbjct: 6 RILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSL-IVTGDLSVN---LD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQS + +G LSVN +D A+ + G R+ LT +E+ ++ + + ++ L Sbjct: 126 LAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 N ++ + E ++ I +LR K+ I TVWGRGY E + E Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVELNPAQPTRILTVWGRGYKFAETGESE 238 >gi|160935974|ref|ZP_02083348.1| hypothetical protein CLOBOL_00871 [Clostridium bolteae ATCC BAA-613] gi|158441216|gb|EDP18933.1| hypothetical protein CLOBOL_00871 [Clostridium bolteae ATCC BAA-613] Length = 230 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 130/224 (58%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++IED+K + + IE +L + + V + G DG++L + + D ++LDLGL D+ G E+ Sbjct: 7 IIIIEDEKNICNFIETVLSPQGYQVTCANTGTDGLKLIESLKPDVVLLDLGLPDMDGLEL 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ +R + P+ ++S + KV L GADDY++KPF EL+ARIR +R S+ Sbjct: 67 IQEVRSTS-ALPIIVISARTLERSKVAALDLGADDYLTKPFGTAELLARIRTALRHSQRA 125 Query: 123 A--QSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A QSL GDL ++ + + V+V+G +HLT EY+++ LL+ +T E ++ ++ Sbjct: 126 AGTQSLKYEVGDLLIDFERRLVKVKGQDVHLTQIEYKLVSLLAQNAGKVMTYESIISKIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+ V + +R+KL YI T G GY +RE Sbjct: 186 GPFADSDNQILRVNMAHIRRKLEENPAEPQYIFTEIGVGYRMRE 229 >gi|226349426|ref|YP_002776540.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226245341|dbj|BAH55688.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 224 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 127/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ LA ++ L +E F V V G DG+E +FD ++LD+ L + G+ Sbjct: 1 MRILLVEDEARLAETVRRGLTAEGFVVDVAREGCDGLEQAVTGDFDVVVLDIMLPGMHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR ++ TPV +LS D+ GADDY++KPF+ LVAR+RA++RR Sbjct: 61 QILRELRARQVWTPVLMLSAKDGEYDQADAFDLGADDYLTKPFSFVILVARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G+L+++ + V + LT +EY ++E L K ++K L ++D Sbjct: 121 PERPAILTAGNLALDPARRRVSRGEDVLALTPREYGVLEFLLRNKGDVVSKAEILRSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V+I LR+K+ +A G IETV G GY L Sbjct: 181 SNYDGDDNVVEVYIGYLRRKI-DAPFGMATIETVRGVGYRL 220 >gi|167561696|ref|ZP_02354612.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis EO147] gi|167568932|ref|ZP_02361806.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis C6786] Length = 250 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL +PG Sbjct: 4 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGAEADTALSMQTFDLLILDLGLPKMPGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 64 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 124 GGGPTVVRHGSLSFDQVGRIACANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCL 221 >gi|83312342|ref|YP_422606.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947183|dbj|BAE52047.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 225 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ LA I LKS F V D + + A ILDLGL D G Sbjct: 1 MRILLVEDNDRLAEFISAGLKSAGFVPDVFGTVADATAAFESAAYQAAILDLGLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++RA R P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+RAI+RR Sbjct: 61 DIVRAQRAKAAPCPIMVLTARDRVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+L+ + + V V G + + +E +M+E L R ++K LY Sbjct: 121 AALSVELSLGNLTFDTAGREVRVDGQLVAMPRREMEMLEHLLRRSGKVVSKRSLEEGLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D+ ++V + +LRK+L G + T+ G GY+L + A Sbjct: 181 FDDDVTPNSVEVLVSRLRKRLQQTGAGVT-VHTLRGIGYMLADGAS 225 >gi|332308855|ref|YP_004436705.1| two component heavy metal response transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176184|gb|AEE25437.1| two component heavy metal response transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 225 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ I+ L F V + G DG E++ IILD+ L DI G+ Sbjct: 1 MKILVVEDETKTGDYIKQGLAESGFVVELVRTGLDGHHKAMLGEYELIILDVMLPDIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +LR + TPV L+ + D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 KILSSLRESNNHTPVLFLTARDHVNDRVKGLELGADDYLVKPFAFAELLARVRTLIRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL +++ ++ G I+LT KE+ ++EL+ R+ L + + + ++D Sbjct: 121 SVPNNILHIADLELDIPSRIATRSGRTINLTTKEFTLLELMVRRQGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +IDV I +LR K+ + K I+TV G GY + N Sbjct: 181 MNFDSDTNVIDVAIRRLRAKIDDDFSLK-LIQTVRGMGYKMCSN 223 >gi|295104695|emb|CBL02239.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 225 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L I L+ + V GE +E +D ++LDL L + G Sbjct: 1 MRLLVVEDEHSLREDIARKLRLSGYEVDACADGEAALETLAAERYDLVLLDLNLPKVDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR+LR + T V ILS S I DKV GL +GA+DY+SKPF+ EL AR+R++ RR Sbjct: 61 QVLRSLRQHDLETCVLILSARSEISDKVEGLDAGANDYLSKPFHLAELEARVRSLTRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G LS N ++ V + LT KE ++E L L + +++E + H++D Sbjct: 121 IQQDVCLCCGRLSFNTRSRVATVDSQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G + I V I LRKKL AA G + I G GY Sbjct: 181 GSVDSFSNSIRVHISALRKKL-RAALGYDPIRNRIGEGY 218 >gi|229141822|ref|ZP_04270350.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|228641658|gb|EEK97961.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 222 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I LK E + +G+ + ++D IILD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSGLKEEGHFILKLHNENEGLNIAYEQDWDIIILDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS + Sbjct: 61 CRKIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNCN 119 Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ I DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 222 >gi|222529476|ref|YP_002573358.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456323|gb|ACM60585.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 232 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 133/229 (58%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G+EV Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDGYEV 63 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 L+ +R K + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++RR Sbjct: 64 LKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + GD+ V+ +TV+ + L+ KE+++++LL + L ++ L Sbjct: 124 SLRPEVEDKVKFGDIEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENRGRVLDRDFILQR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|323359410|ref|YP_004225806.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275781|dbj|BAJ75926.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 244 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++ L + + L+ E ++V G D ++ + + DA++LD+ + D+ G Sbjct: 18 LRVLVVDDEQMLTDLLSMALRMEGWDVRTAGSGFDALQAARDFAPDAMVLDIMMPDLDGM 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + PV L+ ++ D+V GL +G DDY++KPF+ EE+VAR+R ++RR+ Sbjct: 78 AVLQRLRHSGNDVPVLFLTAKDAVADRVAGLTAGGDDYVTKPFSLEEVVARLRGLMRRA- 136 Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A + ++ GDLS+N D+ V GH I LT E++++ L + ++K L Sbjct: 137 GTALTRDSEPILRVGDLSLNEDSHEVVRGGHEIELTATEFELLRFLMRNQRRVVSKAQIL 196 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++ +++++I LRKK+ AG I TV G GY+++ Sbjct: 197 DRVWNYDFGGRSSVVELYISYLRKKID--AGHDPLIHTVRGVGYMIK 241 >gi|83649242|ref|YP_437677.1| response regulator [Hahella chejuensis KCTC 2396] gi|83637285|gb|ABC33252.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 219 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ LA I+ L + V GE + K +F +ILDLGL DI G Sbjct: 1 MRILLVEDDELLADGIQTSLSQQANTVDWVASGEAALHALKLEQFHLVILDLGLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR PV ILS ++D+V+GL +GADDY+ KPF+ EL AR+RA+ RR Sbjct: 61 TVLKRLRDRGDEIPVLILSARDQVQDRVKGLDAGADDYLLKPFDVSELKARLRALSRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A I ++ + + V + L+ +EY ++ L+ + L+K+ +Y Sbjct: 121 GNAHPEIQLANIRILPSSYQVYKSAEEVRLSRREYALLYELASHRGRVLSKDQLEELVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LRKKL+ + I+TV G GY++ Sbjct: 181 WSDDVSSNTMEVHIHNLRKKLN-----PDLIKTVRGMGYMI 216 >gi|261213126|ref|ZP_05927410.1| DNA-binding response regulator [Vibrio sp. RC341] gi|260838191|gb|EEX64868.1| DNA-binding response regulator [Vibrio sp. RC341] Length = 218 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S+++ L + + V + G + K +F A+ILDL L D+ G Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A + PV IL+ I D+V+GL GAD+YI KPF EEL+AR+R I+RRS Sbjct: 61 EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI GDL ++L + + + LT EY+++ L + ++KE+ L+ Sbjct: 121 GSAEELISVGDLDLSLSKQEIYYAQQPLKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKKL + N I V G GY++ Sbjct: 181 WDEGSSDNAIEVHIHNLRKKLPD-----NLIRNVRGVGYMI 216 >gi|121585926|ref|ZP_01675719.1| DNA-binding response regulator [Vibrio cholerae 2740-80] gi|153215679|ref|ZP_01950075.1| DNA-binding response regulator [Vibrio cholerae 1587] gi|153801271|ref|ZP_01955857.1| DNA-binding response regulator [Vibrio cholerae MZO-3] gi|121549862|gb|EAX59882.1| DNA-binding response regulator [Vibrio cholerae 2740-80] gi|124114662|gb|EAY33482.1| DNA-binding response regulator [Vibrio cholerae 1587] gi|124123186|gb|EAY41929.1| DNA-binding response regulator [Vibrio cholerae MZO-3] gi|327486060|gb|AEA80466.1| DNA-binding response regulator [Vibrio cholerae LMA3894-4] Length = 218 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S+++ L + + V + G + K +F A+ILDL L D+ G Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A + PV IL+ I D+V+GL GAD+YI KPF EEL+AR+R I+RRS Sbjct: 61 EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI GDL ++L + + + LT EY+++ L + ++KE+ L+ Sbjct: 121 GSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKKL + N ++ V G GY++ Sbjct: 181 WDEGSSDNAIEVHIHNLRKKLPD-----NLVKNVRGVGYMI 216 >gi|15800284|ref|NP_286296.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 EDL933] gi|15829863|ref|NP_308636.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. Sakai] gi|16128554|ref|NP_415103.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. MG1655] gi|26246549|ref|NP_752588.1| DNA-binding transcriptional activator CusR [Escherichia coli CFT073] gi|74311107|ref|YP_309526.1| DNA-binding transcriptional activator CusR [Shigella sonnei Ss046] gi|89107436|ref|AP_001216.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. W3110] gi|91209616|ref|YP_539602.1| DNA-binding transcriptional activator CusR [Escherichia coli UTI89] gi|110640801|ref|YP_668529.1| DNA-binding transcriptional activator CusR [Escherichia coli 536] gi|117622794|ref|YP_851707.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC O1] gi|157160063|ref|YP_001457381.1| DNA-binding transcriptional activator CusR [Escherichia coli HS] gi|168747766|ref|ZP_02772788.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4113] gi|168754663|ref|ZP_02779670.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4401] gi|168760288|ref|ZP_02785295.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4501] gi|168770166|ref|ZP_02795173.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4486] gi|168774625|ref|ZP_02799632.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4196] gi|168779053|ref|ZP_02804060.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4076] gi|168786410|ref|ZP_02811417.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC869] gi|168798123|ref|ZP_02823130.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC508] gi|170021072|ref|YP_001726026.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC 8739] gi|170080150|ref|YP_001729470.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. DH10B] gi|170080251|ref|YP_001729571.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. DH10B] gi|170681461|ref|YP_001742686.1| DNA-binding transcriptional activator CusR [Escherichia coli SMS-3-5] gi|188493381|ref|ZP_03000651.1| transcriptional regulatory protein CusR [Escherichia coli 53638] gi|191172295|ref|ZP_03033837.1| transcriptional regulatory protein CusR [Escherichia coli F11] gi|193063345|ref|ZP_03044435.1| transcriptional regulatory protein CusR [Escherichia coli E22] gi|193069124|ref|ZP_03050082.1| transcriptional regulatory protein CusR [Escherichia coli E110019] gi|194427935|ref|ZP_03060480.1| transcriptional regulatory protein CusR [Escherichia coli B171] gi|194432525|ref|ZP_03064811.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012] gi|195936116|ref|ZP_03081498.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. EC4024] gi|208807343|ref|ZP_03249680.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4206] gi|208816331|ref|ZP_03257510.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4045] gi|208823294|ref|ZP_03263612.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4042] gi|209398379|ref|YP_002269201.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4115] gi|209917826|ref|YP_002291910.1| DNA-binding transcriptional activator CusR [Escherichia coli SE11] gi|215485613|ref|YP_002328044.1| DNA-binding transcriptional activator CusR [Escherichia coli O127:H6 str. E2348/69] gi|217324144|ref|ZP_03440228.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. TW14588] gi|218549855|ref|YP_002383646.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii ATCC 35469] gi|218557511|ref|YP_002390424.1| DNA-binding transcriptional activator CusR [Escherichia coli S88] gi|218688397|ref|YP_002396609.1| DNA-binding transcriptional activator CusR [Escherichia coli ED1a] gi|218694011|ref|YP_002401678.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989] gi|218698943|ref|YP_002406572.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI39] gi|218703903|ref|YP_002411422.1| DNA-binding transcriptional activator CusR [Escherichia coli UMN026] gi|227884451|ref|ZP_04002256.1| transcriptional regulatory protein CusR [Escherichia coli 83972] gi|237707459|ref|ZP_04537940.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA] gi|238899848|ref|YP_002925644.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli BW2952] gi|254791736|ref|YP_003076573.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. TW14359] gi|256023816|ref|ZP_05437681.1| DNA-binding transcriptional activator CusR [Escherichia sp. 4_1_40B] gi|260842796|ref|YP_003220574.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O103:H2 str. 12009] gi|260853821|ref|YP_003227712.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O26:H11 str. 11368] gi|261224036|ref|ZP_05938317.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli O157:H7 str. FRIK2000] gi|261257730|ref|ZP_05950263.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O157:H7 str. FRIK966] gi|291281521|ref|YP_003498339.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli O55:H7 str. CB9615] gi|293403832|ref|ZP_06647826.1| copper-sensing two-component system response regulator CusR [Escherichia coli FVEC1412] gi|293408693|ref|ZP_06652532.1| copper-sensing two-component system response regulator CusR [Escherichia coli B354] gi|293413867|ref|ZP_06656516.1| two-component system [Escherichia coli B185] gi|298379609|ref|ZP_06989214.1| two-component system [Escherichia coli FVEC1302] gi|300817922|ref|ZP_07098136.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1] gi|300901064|ref|ZP_07119177.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1] gi|300907733|ref|ZP_07125353.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1] gi|300920632|ref|ZP_07137050.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300927346|ref|ZP_07143070.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1] gi|300940500|ref|ZP_07155071.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|300949241|ref|ZP_07163273.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1] gi|300954363|ref|ZP_07166820.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1] gi|300990248|ref|ZP_07179164.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300996924|ref|ZP_07181589.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|301023989|ref|ZP_07187709.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1] gi|301027580|ref|ZP_07190910.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|301049754|ref|ZP_07196698.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|301302040|ref|ZP_07208173.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1] gi|301329064|ref|ZP_07222077.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1] gi|301643823|ref|ZP_07243858.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1] gi|306812997|ref|ZP_07447190.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101] gi|307137184|ref|ZP_07496540.1| DNA-binding transcriptional activator CusR [Escherichia coli H736] gi|309798092|ref|ZP_07692466.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7] gi|312970644|ref|ZP_07784825.1| transcriptional activator protein irlR [Escherichia coli 1827-70] gi|331641064|ref|ZP_08342199.1| transcriptional regulatory protein CusR [Escherichia coli H736] gi|331645728|ref|ZP_08346831.1| transcriptional regulatory protein CusR [Escherichia coli M605] gi|331651576|ref|ZP_08352595.1| transcriptional regulatory protein CusR [Escherichia coli M718] gi|331656596|ref|ZP_08357558.1| transcriptional regulatory protein CusR [Escherichia coli TA206] gi|331661932|ref|ZP_08362855.1| transcriptional regulatory protein CusR [Escherichia coli TA143] gi|331672070|ref|ZP_08372866.1| transcriptional regulatory protein CusR [Escherichia coli TA280] gi|331681986|ref|ZP_08382610.1| transcriptional regulatory protein CusR [Escherichia coli H299] gi|82583735|sp|P0AD00|CUSR_ECO57 RecName: Full=Transcriptional regulatory protein CusR gi|82583736|sp|P0ACZ9|CUSR_ECOL6 RecName: Full=Transcriptional regulatory protein CusR gi|82583737|sp|P0ACZ8|CUSR_ECOLI RecName: Full=Transcriptional regulatory protein CusR gi|7804906|gb|AAF70175.1|AF245661_2 CusR [Escherichia coli] gi|12513453|gb|AAG54904.1|AE005236_5 putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. EDL933] gi|26106948|gb|AAN79132.1|AE016757_36 Transcriptional Regulatory protein cusR [Escherichia coli CFT073] gi|1778486|gb|AAB40769.1| CopR homolog [Escherichia coli] gi|1786784|gb|AAC73672.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. MG1655] gi|4062195|dbj|BAA35205.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K12 substr. W3110] gi|13360067|dbj|BAB34032.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|73854584|gb|AAZ87291.1| putative 2-component transcriptional regulator [Shigella sonnei Ss046] gi|91071190|gb|ABE06071.1| putative 2-component transcriptional regulator [Escherichia coli UTI89] gi|110342393|gb|ABG68630.1| probable two component response regulator transcription regulator protein [Escherichia coli 536] gi|115511918|gb|ABI99992.1| putative 2-component transcriptional regulator [Escherichia coli APEC O1] gi|157065743|gb|ABV04998.1| transcriptional regulatory protein CusR [Escherichia coli HS] gi|169756000|gb|ACA78699.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169887985|gb|ACB01692.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. DH10B] gi|169888086|gb|ACB01793.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. DH10B] gi|170519179|gb|ACB17357.1| transcriptional regulatory protein CusR [Escherichia coli SMS-3-5] gi|187769690|gb|EDU33534.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4196] gi|188017686|gb|EDU55808.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4113] gi|188488580|gb|EDU63683.1| transcriptional regulatory protein CusR [Escherichia coli 53638] gi|189003139|gb|EDU72125.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4076] gi|189358078|gb|EDU76497.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4401] gi|189360901|gb|EDU79320.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4486] gi|189369137|gb|EDU87553.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4501] gi|189373725|gb|EDU92141.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC869] gi|189379305|gb|EDU97721.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC508] gi|190907394|gb|EDV66991.1| transcriptional regulatory protein CusR [Escherichia coli F11] gi|192930929|gb|EDV83533.1| transcriptional regulatory protein CusR [Escherichia coli E22] gi|192957668|gb|EDV88113.1| transcriptional regulatory protein CusR [Escherichia coli E110019] gi|194413910|gb|EDX30187.1| transcriptional regulatory protein CusR [Escherichia coli B171] gi|194419086|gb|EDX35169.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012] gi|208727144|gb|EDZ76745.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4206] gi|208732979|gb|EDZ81667.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4045] gi|208737487|gb|EDZ85171.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4042] gi|209159779|gb|ACI37212.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4115] gi|209777738|gb|ACI87181.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209777740|gb|ACI87182.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209777742|gb|ACI87183.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209777744|gb|ACI87184.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209777746|gb|ACI87185.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209911085|dbj|BAG76159.1| putative two-component response regulator [Escherichia coli SE11] gi|215263685|emb|CAS08019.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O127:H6 str. E2348/69] gi|217320365|gb|EEC28789.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. TW14588] gi|218350743|emb|CAU96435.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli 55989] gi|218357396|emb|CAQ90035.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia fergusonii ATCC 35469] gi|218364280|emb|CAR01951.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli S88] gi|218368929|emb|CAR16683.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli IAI39] gi|218425961|emb|CAR06772.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli ED1a] gi|218431000|emb|CAR11876.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli UMN026] gi|222032331|emb|CAP75070.1| Transcriptional regulatory protein cusR [Escherichia coli LF82] gi|226898669|gb|EEH84928.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA] gi|227838537|gb|EEJ49003.1| transcriptional regulatory protein CusR [Escherichia coli 83972] gi|238860861|gb|ACR62859.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli BW2952] gi|254591136|gb|ACT70497.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli O157:H7 str. TW14359] gi|257752470|dbj|BAI23972.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O26:H11 str. 11368] gi|257757943|dbj|BAI29440.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O103:H2 str. 12009] gi|260450264|gb|ACX40686.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli DH1] gi|281177711|dbj|BAI54041.1| putative two-component response regulator [Escherichia coli SE15] gi|284920369|emb|CBG33430.1| two-component system response regulator [Escherichia coli 042] gi|290761394|gb|ADD55355.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli O55:H7 str. CB9615] gi|291428418|gb|EFF01443.1| copper-sensing two-component system response regulator CusR [Escherichia coli FVEC1412] gi|291433925|gb|EFF06898.1| two-component system [Escherichia coli B185] gi|291471871|gb|EFF14354.1| copper-sensing two-component system response regulator CusR [Escherichia coli B354] gi|294494152|gb|ADE92908.1| transcriptional regulatory protein cusR [Escherichia coli IHE3034] gi|298279307|gb|EFI20815.1| two-component system [Escherichia coli FVEC1302] gi|299879285|gb|EFI87496.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|300298486|gb|EFJ54871.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|300304379|gb|EFJ58899.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|300318662|gb|EFJ68446.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1] gi|300355477|gb|EFJ71347.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1] gi|300396795|gb|EFJ80333.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1] gi|300400551|gb|EFJ84089.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1] gi|300407136|gb|EFJ90674.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300412371|gb|EFJ95681.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300416702|gb|EFK00013.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1] gi|300451322|gb|EFK14942.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1] gi|300454700|gb|EFK18193.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|300529619|gb|EFK50681.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1] gi|300842592|gb|EFK70352.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1] gi|300844580|gb|EFK72340.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1] gi|301077805|gb|EFK92611.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1] gi|305853760|gb|EFM54199.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101] gi|307552442|gb|ADN45217.1| transcriptional regulatory protein CusR [Escherichia coli ABU 83972] gi|307627991|gb|ADN72295.1| DNA-binding transcriptional activator CusR [Escherichia coli UM146] gi|308118333|gb|EFO55595.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7] gi|309700808|emb|CBJ00105.1| two-component system response regulator [Escherichia coli ETEC H10407] gi|310337293|gb|EFQ02431.1| transcriptional activator protein irlR [Escherichia coli 1827-70] gi|312945116|gb|ADR25943.1| DNA-binding transcriptional activator CusR [Escherichia coli O83:H1 str. NRG 857C] gi|315135236|dbj|BAJ42395.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli DH1] gi|315255136|gb|EFU35104.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1] gi|315287006|gb|EFU46421.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3] gi|315291379|gb|EFU50739.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1] gi|315616518|gb|EFU97135.1| transcriptional activator protein irlR [Escherichia coli 3431] gi|320180105|gb|EFW55046.1| Copper-sensing two-component system response regulator CusR [Shigella boydii ATCC 9905] gi|320192974|gb|EFW67614.1| Copper-sensing two-component system response regulator CusR [Escherichia coli O157:H7 str. EC1212] gi|320194244|gb|EFW68876.1| Copper-sensing two-component system response regulator CusR [Escherichia coli WV_060327] gi|320638018|gb|EFX07782.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. G5101] gi|320643424|gb|EFX12594.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H- str. 493-89] gi|320648759|gb|EFX17386.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H- str. H 2687] gi|320654345|gb|EFX22392.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660133|gb|EFX27660.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7 str. USDA 5905] gi|323153719|gb|EFZ39967.1| transcriptional activator protein irlR [Escherichia coli EPECa14] gi|323158749|gb|EFZ44762.1| transcriptional activator protein irlR [Escherichia coli E128010] gi|323164006|gb|EFZ49814.1| transcriptional activator protein irlR [Shigella sonnei 53G] gi|323170689|gb|EFZ56339.1| transcriptional activator protein irlR [Escherichia coli LT-68] gi|323191206|gb|EFZ76470.1| transcriptional activator protein irlR [Escherichia coli RN587/1] gi|323938427|gb|EGB34680.1| heavy metal response regulator [Escherichia coli E1520] gi|323943161|gb|EGB39318.1| heavy metal response regulator [Escherichia coli E482] gi|323952851|gb|EGB48719.1| heavy metal response regulator [Escherichia coli H252] gi|323958328|gb|EGB54034.1| heavy metal response regulator [Escherichia coli H263] gi|323967516|gb|EGB62932.1| heavy metal response regulator [Escherichia coli M863] gi|323972194|gb|EGB67406.1| heavy metal response regulator [Escherichia coli TA007] gi|324010554|gb|EGB79773.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1] gi|324020182|gb|EGB89401.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3] gi|324114702|gb|EGC08670.1| heavy metal response regulator [Escherichia fergusonii B253] gi|324116644|gb|EGC10559.1| heavy metal response regulator [Escherichia coli E1167] gi|325498235|gb|EGC96094.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii ECD227] gi|326341321|gb|EGD65113.1| Copper-sensing two-component system response regulator CusR [Escherichia coli O157:H7 str. 1044] gi|326345902|gb|EGD69641.1| Copper-sensing two-component system response regulator CusR [Escherichia coli O157:H7 str. 1125] gi|327254248|gb|EGE65870.1| transcriptional activator protein irlR [Escherichia coli STEC_7v] gi|330910330|gb|EGH38840.1| copper-sensing two-component system response regulator CusR [Escherichia coli AA86] gi|331037862|gb|EGI10082.1| transcriptional regulatory protein CusR [Escherichia coli H736] gi|331044480|gb|EGI16607.1| transcriptional regulatory protein CusR [Escherichia coli M605] gi|331049854|gb|EGI21912.1| transcriptional regulatory protein CusR [Escherichia coli M718] gi|331054844|gb|EGI26853.1| transcriptional regulatory protein CusR [Escherichia coli TA206] gi|331060354|gb|EGI32318.1| transcriptional regulatory protein CusR [Escherichia coli TA143] gi|331071059|gb|EGI42418.1| transcriptional regulatory protein CusR [Escherichia coli TA280] gi|331080665|gb|EGI51839.1| transcriptional regulatory protein CusR [Escherichia coli H299] gi|332085680|gb|EGI90844.1| transcriptional activator protein irlR [Shigella dysenteriae 155-74] gi|332094233|gb|EGI99284.1| transcriptional activator protein irlR [Shigella boydii 5216-82] gi|332341911|gb|AEE55245.1| transcriptional activator protein IrlR [Escherichia coli UMNK88] gi|333008223|gb|EGK27698.1| transcriptional activator protein irlR [Shigella flexneri VA-6] Length = 227 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221 >gi|108798410|ref|YP_638607.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119867507|ref|YP_937459.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108768829|gb|ABG07551.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119693596|gb|ABL90669.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 265 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 120/228 (52%), Gaps = 11/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ LA + L+ E+F VT G D I + + + D +ILD+GL I G E Sbjct: 33 RALVVDDEAPLAEVVASYLEREHFEAIVTGNGADAITIARELDPDVVILDIGLPGIDGLE 92 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + V +L+ + D + GL GADDYI+KPF+ ELVARIRA++RR R Sbjct: 93 VCRQLRTFSDAY-VVMLTARDTEMDTILGLTVGADDYITKPFSPRELVARIRAMLRRPRI 151 Query: 122 HAQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + T G L +++ A+ V + I LT E+ ++E LS R L++ Sbjct: 152 QQSAAAATEREAVPPRRFGALIIDVAAREVHIDDEPILLTRTEFDILEALSARPGIVLSR 211 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L + DG ++DV I LR+KL + A YI TV G GY Sbjct: 212 RQLLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAANPRYITTVRGVGY 259 >gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] Length = 269 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ ++ + + L+ E + + G+ ++ + + DA++LD+ L D+ G Sbjct: 43 VRVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGL 102 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RR+ Sbjct: 103 TVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRAG 162 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++S++V GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 163 AADRRSESVLVVGDLTLDEDSHEVSRGGQDIHLTATEFELLRFLMRNPRRVLSKAQILDR 222 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+K+ AG + I T G GY+++ Sbjct: 223 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 265 >gi|157156750|ref|YP_001461733.1| DNA-binding transcriptional activator CusR [Escherichia coli E24377A] gi|194437422|ref|ZP_03069519.1| transcriptional regulatory protein CusR [Escherichia coli 101-1] gi|218553112|ref|YP_002386025.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI1] gi|253774451|ref|YP_003037282.1| CusR family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160647|ref|YP_003043755.1| DNA-binding transcriptional activator CusR [Escherichia coli B str. REL606] gi|256020522|ref|ZP_05434387.1| DNA-binding transcriptional activator CusR [Shigella sp. D9] gi|293418681|ref|ZP_06661116.1| DNA-binding transcriptional activator CusR [Escherichia coli B088] gi|300825001|ref|ZP_07105099.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7] gi|307315262|ref|ZP_07594839.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|331666916|ref|ZP_08367790.1| transcriptional regulatory protein CusR [Escherichia coli TA271] gi|331676223|ref|ZP_08376935.1| transcriptional regulatory protein CusR [Escherichia coli H591] gi|332281703|ref|ZP_08394116.1| transcriptional regulatory protein cusR [Shigella sp. D9] gi|157078780|gb|ABV18488.1| transcriptional regulatory protein cusR [Escherichia coli E24377A] gi|194423591|gb|EDX39581.1| transcriptional regulatory protein CusR [Escherichia coli 101-1] gi|218359880|emb|CAQ97422.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli IAI1] gi|242376342|emb|CAQ31038.1| cusR [Escherichia coli BL21(DE3)] gi|253325495|gb|ACT30097.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972548|gb|ACT38219.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli B str. REL606] gi|253976742|gb|ACT42412.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli BL21(DE3)] gi|291325209|gb|EFE64624.1| DNA-binding transcriptional activator CusR [Escherichia coli B088] gi|300522521|gb|EFK43590.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7] gi|306905360|gb|EFN35899.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|315059824|gb|ADT74151.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli W] gi|320198302|gb|EFW72906.1| Copper-sensing two-component system response regulator CusR [Escherichia coli EC4100B] gi|323184946|gb|EFZ70314.1| transcriptional activator protein irlR [Escherichia coli 1357] gi|323379609|gb|ADX51877.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323945141|gb|EGB41202.1| heavy metal response regulator [Escherichia coli H120] gi|323963248|gb|EGB58814.1| heavy metal response regulator [Escherichia coli H489] gi|331066140|gb|EGI38024.1| transcriptional regulatory protein CusR [Escherichia coli TA271] gi|331076281|gb|EGI47563.1| transcriptional regulatory protein CusR [Escherichia coli H591] gi|332104055|gb|EGJ07401.1| transcriptional regulatory protein cusR [Shigella sp. D9] Length = 227 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLMKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221 >gi|293399743|ref|ZP_06643889.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306143|gb|EFE47386.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 224 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+K L + L+ E ++V GE+ + + E+D +ILD+ + + G Sbjct: 1 MRILLAEDEKELNRIVCERLREEQYSVDACLNGEEALAFLQVMEYDVVILDIMMPIVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR PV +L+ SI+D+V+GL +GADDY+ KPF +EL+ARIR ++R+ Sbjct: 61 EVLQTLRANGKQVPVLMLTAKDSIQDRVKGLDAGADDYLVKPFAFDELLARIRVLLRKPS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL + + V IHL+ KE+ ++ + L++E H+++ Sbjct: 121 NRHTGFYQVDDLVLYPNTHKVLRADKEIHLSAKEFSLLRYMMQNTGIVLSREKLEQHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +IDV+I LRKK+ K + T+ G GYVL+ Sbjct: 181 YDYSGESNVIDVYIRYLRKKIDEGHSHK-LLHTIRGVGYVLK 221 >gi|194293015|ref|YP_002008922.1| response regulator in two-component regulatory system [Cupriavidus taiwanensis LMG 19424] gi|193226919|emb|CAQ72870.1| Putative response regulator in two-component regulatory system [Cupriavidus taiwanensis LMG 19424] Length = 237 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 121/229 (52%), Gaps = 16/229 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--------FDAIILDL 52 MR+LL+EDD + S++L L+ E F V D DG +D I+LDL Sbjct: 1 MRVLLVEDDAMIGESVKLALRQEGFAV---DWVRDGDAGLAAATTAADGQACYDLILLDL 57 Query: 53 GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 GL PG EVLRALR + TPV IL+ ++ D+V GL +GADDY+ KPF+ +EL AR+ Sbjct: 58 GLPRRPGLEVLRALRARGVPTPVLILTARDAVADRVAGLNAGADDYLVKPFDLQELAARM 117 Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ RR+ G A+ L+ GD+ +N + +G + L+ +E+ ++ L R + Sbjct: 118 HALARRAAGRAEPLVTYGDIVLNPATREATCRGEPVRLSAREFALLSALMARPGKVWSVP 177 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY DE ++V+I LRKK G I + G GYV+ Sbjct: 178 QLQERLYGWDDEVGSNTVEVYIHALRKKF-----GAALIRNIRGVGYVV 221 >gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 132/229 (57%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K +A IEL LK E ++VYV G++G++ + D I+LD+ L I G E Sbjct: 5 KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGINGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +++ I D+V GL SGADDY++KPF EEL+ARIRA +R+S+ Sbjct: 65 ICRKIRQHS-NVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ DL+++ + V+ I LT +EY ++E L K LT+E L +++ Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTREQILENVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++DV+I LR K+ + K I TV G GY E ++ Sbjct: 184 GYSYMGDTNVVDVYIRYLRSKVDDGFKTK-LIHTVRGVGYKCEERENED 231 >gi|299822982|ref|ZP_07054868.1| response regulator [Listeria grayi DSM 20601] gi|299816511|gb|EFI83749.1| response regulator [Listeria grayi DSM 20601] Length = 226 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 130/225 (57%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K L+ IEL L+ EN+ V + G G+EL ++DAI+LDL L + G E Sbjct: 3 RILIIEDEKNLSRFIELELQHENYETQVANDGRSGLELALNEDWDAILLDLMLPHLNGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE----LVARIRAIVR 117 V R LR K TP+ +++ S+ D+V GL GADDYI KPF EE L + +R + Sbjct: 63 VCRRLRQVK-QTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVEH 121 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q+ + D+ V + + V+ I LT +EY+++ L N LT+E+ LN Sbjct: 122 AEEAAKQTTLEYRDIVVEKENRIVKRGDEIIDLTKREYELLLTLMENINIVLTREVLLNK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV++ LR K+ + + ++YI+TV G GYV+R Sbjct: 182 VWGYETEVETNVVDVYVRYLRNKIDHPS-EESYIQTVRGTGYVMR 225 >gi|254477299|ref|ZP_05090685.1| two-component response regulator [Ruegeria sp. R11] gi|214031542|gb|EEB72377.1| two-component response regulator [Ruegeria sp. R11] Length = 225 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + L + V + G + + ++D ++ D + D+ G Sbjct: 1 MRILLLEDDADIGAWTSKGLGAAGHVVDWIENGREALIAASTRDYDVLVFDRMVPDLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR LR A+I+TP+ +L+ + ++ED+V GL++GADDY+SKPF EL+ARI A+ RR R Sbjct: 61 SALRTLRGARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGR 120 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A L G L ++L ++T G + L KE++++E+L K T+ M L Sbjct: 121 GEGDAPATKLSHRG-LELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D EP +++ + +LR K+ + YI T+ G GY+ Sbjct: 180 RVWDINFEPSTSVVETHMSRLRNKIEKPFDAE-YIRTIRGSGYMF 223 >gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA [Mycobacterium marinum M] gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M] Length = 232 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/235 (35%), Positives = 133/235 (56%), Gaps = 14/235 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 +RIL+++DD+A+ S+ +S +FN Y +L DG+E + DA++LD+ + + Sbjct: 3 VRILVVDDDRAVRESLR---RSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRL 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 60 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119 Query: 118 RSRGH----AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R++ A S+ +T DLS++ + V RI LT E+ ++E+L LT+ Sbjct: 120 RTKPEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRS 179 Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 180 RILEEVW-GFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 232 >gi|167032707|ref|YP_001667938.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|166859195|gb|ABY97602.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 226 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED + L F + GE G L + D +ILD+ L G+ Sbjct: 1 MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A+R A + TPV L+ ++ED+V GL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q ++ DL ++L + E G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGTRIDLTAKEFCLLELLLRRQGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + + +I+V I +LR K+ + K I TV G GYVL E + Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDPHPNK-LIHTVRGMGYVLEERTE 226 >gi|120613269|ref|YP_972947.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|326319347|ref|YP_004237019.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|120591733|gb|ABM35173.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] gi|323376183|gb|ADX48452.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 224 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 123/226 (54%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L+ V G D L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRTLRGSGAAVDHVASGSDADTVLATTQEFDLLILDLGLPRMHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF+ +EL AR+RA+ RR Sbjct: 61 LDVLKRLRGRGSALPVLILTAADSVDERVKGLDYGADDYMAKPFSLQELEARVRALTRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S I G L + + + G + L+ +E ++E+L R ++KE + L Sbjct: 121 MGATSSTIRHGPLVYDQAGRMATIDGKLVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +E I+V+I +LRKK+ G I TV G GY L + A Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIER---GPIRIATVRGLGYCLEKVA 223 >gi|88811133|ref|ZP_01126389.1| DNA-binding response regulator [Nitrococcus mobilis Nb-231] gi|88791672|gb|EAR22783.1| DNA-binding response regulator [Nitrococcus mobilis Nb-231] Length = 224 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++EDD LA + LK F V +T D L + +D I+LDLGL D G Sbjct: 1 MLILVVEDDYVLAEGLRRDLKRAGFAVDLTGSAVDAAHLGREALYDLIVLDLGLPDGAGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E+LR R A PV IL+ + ++V G ++GADDY+ KPF+ EEL+AR+ A++RR+ Sbjct: 61 EMLRGWRAAGNPIPVLILTARDAWYERVDGFKAGADDYLGKPFHTEELLARVGALLRRAH 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + + L ++ + + V + + + LT E++++ L L+K H+ Sbjct: 121 RQQPSGPLQSAGLVLDEEEQKVILPDQQPVRLTATEFRLLRYFMLNPQRLLSKARLTEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 Y +P+ +++V++ +LR+KL G +YIET G+GY R+ Sbjct: 181 YAEDGDPDSNVLEVYVNRLRRKL-----GSDYIETRRGQGYRFRD 220 >gi|311277391|ref|YP_003939622.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308746586|gb|ADO46338.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 222 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 119/223 (53%), Gaps = 11/223 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + +E LK ++ V G+D + +D ++LDLGL GF Sbjct: 1 MRILLVEDDPMVGEVLESSLKDASYAVDWVKNGDDALAGFAAQPYDVVLLDLGLPGKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + PV IL+ ++ D+++GL GADDYI KPF EL+ARIRA+ RRS Sbjct: 61 TVLDGLRRKDAAVPVLILTARDALADRLKGLDGGADDYILKPFEMSELLARIRAVTRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G ++ G ++ LD T EV G R L+ +EY ++ L LR L++ + Sbjct: 121 GSRTPVMNNGIMT--LDPATHEVCLLASGERFLLSNREYALLAALMLRPGGILSRRDLED 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +Y +E E I+ I LRKKL G+ I+ + G G+ Sbjct: 179 SIYGWGEEVESNAIEFLIHALRKKL-----GREAIKNIRGVGW 216 >gi|171912654|ref|ZP_02928124.1| DNA-binding heavy metal response regulator [Verrucomicrobium spinosum DSM 4136] Length = 226 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ + L+ + V V GE+G++ + FD I+LD+ L G+ Sbjct: 1 MRILIVEDERRSREFLAKGLQEAGYVVDVAGDGEEGLQATRDSAFDLIVLDVMLPVRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR TPV L+ S+ D+VRGL+ GADDY+ KPF E +AR+R ++RRS Sbjct: 61 HVLEHLRTEGCETPVLFLTARDSVPDRVRGLELGADDYLVKPFAWTEFLARVRTLLRRSP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDL ++L H I LT KE+Q++ LL+ R+ L++ ++D Sbjct: 121 VRTAEIIKIGDLELDLPRMKARRGRHPIDLTAKEFQLLSLLARRRGEVLSRTTICEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + +DV + +LR+K+ K I T G GY+L + + Sbjct: 181 MNFSTDSNAVDVAMGRLRRKVDEPFENK-LIHTQRGLGYILEDRGQ 225 >gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] Length = 236 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 136/236 (57%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F V + G+ G EL + D I+LDL L ++ G Sbjct: 2 VKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEKPDLIVLDLMLPEMDGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 62 EVTKKLRQNKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A +++I+ GDL + ++ V +Q + LT KE++++ L+ + + Sbjct: 122 GKAEAVEENSDEMEAMILIGDLKILPESYEVYLQDELLDLTPKEFELLLFLANHRGKVFS 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR KL YI+T+ G GY + EN K Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKLETDTKQPKYIKTIRGFGYKM-ENVK 236 >gi|89896308|ref|YP_519795.1| hypothetical protein DSY3562 [Desulfitobacterium hafniense Y51] gi|89335756|dbj|BAE85351.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+K +A ++ +LK + V + G+ G++ +D IILD+ L + G Sbjct: 1 MRILMIEDEKYMARAVAEVLKKNRYTVDLVHNGQFGLDCALSNIYDIIILDIMLPERDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R +I TPV +L+ +EDKVRGL GADDY++KPF+ +EL+AR+RA+ RR Sbjct: 61 SILKEVRRNRIETPVILLTARGQLEDKVRGLDLGADDYLAKPFHTDELLARLRALGRRPP 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL + A ++ G I LT KE Q++ELL KN ++K+ + ++ Sbjct: 121 ALLNEGALSFADLQLLPHALMLKSNGQEIKLTLKEAQLLELLINHKNIIVSKDAIIEKIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ I LRKKLS G + I T+ G GY L Sbjct: 181 GHDTDAADNHVEAHISLLRKKLSEIHSG-SMIRTIRGAGYTL 221 >gi|71736484|ref|YP_275217.1| DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557037|gb|AAZ36248.1| DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323718|gb|EFW79802.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328357|gb|EFW84361.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882464|gb|EGH16613.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330889733|gb|EGH22394.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330987871|gb|EGH85974.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010798|gb|EGH90854.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 227 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L + V D G DG+ ++D I LD L ++ G Sbjct: 3 RILAIEDDAITAKEIVTELSNHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 ++ LR ISTP+ ++S +S ++++VRGL++G DDY+ KPF +E+ AR+ ++RRS Sbjct: 63 IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ DL +NL ++ G + L E++++E L +T+ M ++ Sbjct: 123 VSAGKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ + G I+TV G GYV+ E Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225 >gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA [Mycobacterium avium 104] gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA [Mycobacterium avium subsp. avium ATCC 25291] gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104] Length = 228 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 133/233 (57%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRIL+++DD+A+ S+ +S +FN Y +L DG+E DA++LD+ + + Sbjct: 1 MRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 58 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 117 Query: 118 RSRGH--AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R++ A+S+ +T DL+++ + V RI LT E+ ++E+L LT+ Sbjct: 118 RTKPEDDAESVAMTFSDLTLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 177 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 178 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 228 >gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor A3(2)] gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces coelicolor A3(2)] Length = 248 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 11/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E ++ V G D +E Y D ++LD+ + + G Sbjct: 16 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGLT 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 76 AARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS-S 134 Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +A ++ T DL+++L + V G + LT E+ ++E+ LT+E Sbjct: 135 YAAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTRE 194 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ Sbjct: 195 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQG 245 >gi|312964390|ref|ZP_07778684.1| transcriptional activator protein irlR [Escherichia coli 2362-75] gi|312290867|gb|EFR18743.1| transcriptional activator protein irlR [Escherichia coli 2362-75] Length = 227 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVSDLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221 >gi|153815879|ref|ZP_01968547.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756] gi|317500635|ref|ZP_07958854.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089885|ref|ZP_08338778.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846698|gb|EDK23616.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756] gi|316897953|gb|EFV20005.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403582|gb|EGG83140.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium 3_1_46FAA] Length = 230 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A + L+ NF V V + G+ G++ +FD IILDL L + GFE Sbjct: 4 RILIVEDEESIADLEKDYLELSNFEVEVANDGDTGLQKGLGGDFDLIILDLMLPGVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 64 ICRQIRDQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 123 LINSNAEENEVIEIRGLKIDTTARRVWVGGEERSFTTKEFDLLTFLASHPNHVYTKEELF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 183 REIWDMESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229 >gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus Tu4000] gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus Tu4000] Length = 249 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++++ + + L+ E + + G+ + + + DA++LD+ L D+ G Sbjct: 23 VRVLVVDDEQSITELLSMALRYEGWQIRSAGDGQGALRTAREFRPDAVVLDMMLPDMDGL 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 83 AILGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 142 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++S++V GDL+++ D+ V G IHLT E++++ L L+K L+ Sbjct: 143 AADRRSESMLVVGDLTLDEDSHEVTRGGDGIHLTATEFELLRFLMRNPRRVLSKAQILDR 202 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+K+ AG + I T G GY+++ Sbjct: 203 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 245 >gi|238922143|ref|YP_002935657.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Eubacterium eligens ATCC 27750] gi|238873815|gb|ACR73523.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Eubacterium eligens ATCC 27750] Length = 223 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD++L+ ++ +L+ N++V + G+ ++ + +DA+I+D+ + + G Sbjct: 1 MRILLVEDDRSLSRAVSTILQKNNYSVDCVENGQMALDYLEEDIYDAVIMDIMMPVMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ LR + PV +L+ + I+DKV GL +GA+DY++KPF+ EL+ARIR ++ RS Sbjct: 61 TALKNLRKCGSNIPVLMLTAKTEIDDKVEGLDNGANDYLTKPFDTRELLARIR-VLTRSE 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I G++S+N + LT KEYQM+ + K ++ E F+ ++D Sbjct: 120 KQQDNVITLGNISLNTTTCELSSPSGSFLLTNKEYQMMLMFMNNKTQVISAEHFMEKIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ + +I LR+KL A I T GY L+ N Sbjct: 180 SESDSDISTVWTYISYLRRKLE-ALKSDYSIATRRNMGYYLKNN 222 >gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 236 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD + + L F V+ + GE+ + + D ++LD+ L D GFEV Sbjct: 14 LLVVEDDPNICELLATSLGYAGFTVHRAEGGEEAVRAVARHRPDLVVLDVMLPDFDGFEV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R TP+ L+ ++EDKVRGL G DDY++KPF+ EE++ARIRA++RRS+G Sbjct: 74 ARRIRSGSDRTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRRSKGD 133 Query: 123 AQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178 A + LD +T EV G+ + L+ E++++ + L+K L+H+ Sbjct: 134 APPPPRLQYADLELDEETHEVWRGGNSVQLSPTEFKLLRYFMVNAGRVLSKAQILDHVWR 193 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 YD R + I++ ++ LR+K+ N I+T+ G GYVLR Sbjct: 194 YDFRGDD--GIVESYVSYLRRKIDNTE--PRLIQTLRGIGYVLR 233 >gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 232 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+D+K + ++ L+ ++ GE+G++L + D I+LD+ L + GF Sbjct: 4 RILIIDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKLAQEKNPDLILLDVMLPKMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR LR ++TP+ +L+ DKV GL+ GADDY++KPF+ EL+AR++A +RRS Sbjct: 64 VLRILR-QTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 122 Query: 120 -RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G S +I+ +LS++L VE G I LT +E+ +++ L + ++EM L Sbjct: 123 NNGEGMSNVIIVNNLSIDLSKYKVEKNGRPIELTSREFDLLKFLVANRGLIFSREMLLEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ +V+ +DV I +LR+K+ + YI T G GY E ++ Sbjct: 183 VWGYEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYFSEESE 231 >gi|229522675|ref|ZP_04412091.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80] gi|229528012|ref|ZP_04417403.1| DNA-binding response regulator [Vibrio cholerae 12129(1)] gi|229334374|gb|EEN99859.1| DNA-binding response regulator [Vibrio cholerae 12129(1)] gi|229340660|gb|EEO05666.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80] Length = 247 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S+++ L + + V + G + K +F A+ILDL L D+ G Sbjct: 30 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 89 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A + PV IL+ I D+V+GL GAD+YI KPF EEL+AR+R I+RRS Sbjct: 90 EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 149 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI GDL ++L + + + LT EY+++ L + ++KE+ L+ Sbjct: 150 GSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 209 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKKL + N ++ V G GY++ Sbjct: 210 WDEGSSDNAIEVHIHNLRKKLPD-----NLVKNVRGVGYMI 245 >gi|170738625|ref|YP_001767280.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168192899|gb|ACA14846.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 228 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 127/231 (54%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MR+L+IEDD+ A + + +V DL DG++ L + +D +++D L + Sbjct: 1 MRLLIIEDDREAASYLAKAFREAG---HVADLAADGLDGYALAREGSYDVLVVDRMLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R+LR + TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR+ + R Sbjct: 58 DGLSLIRSLREQGVETPVLILSALGQVDDRVKGLRAGGDDYVPKPYAFSELLARVEVLAR 117 Query: 118 RSRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R G A + GDL ++ + V G I L +E++++E L +T+ M L Sbjct: 118 RRGGGAGEPTAYRVGDLELDRLSHRVTRGGQEIVLQPREFRLLEYLMRHAGQVVTRTMLL 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 H++D +P+ +IDV + +LR K+ + I TV G GY++R + Sbjct: 178 EHVWDYHFDPQTNVIDVHVSRLRAKVDKGF-DRPMIHTVRGAGYMVRAGGE 227 >gi|160873420|ref|YP_001552736.1| two component transcriptional regulator [Shewanella baltica OS195] gi|160858942|gb|ABX47476.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|315265649|gb|ADT92502.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 225 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 128/231 (55%), Gaps = 16/231 (6%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ILL+EDD A +I+ ++K + N+ G G+ L ++D +ILD L + Sbjct: 1 MKILLVEDD---ATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS ++ ++++V+GL++G DDY++KPF EL+ R ++ Sbjct: 58 DGLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMH 117 Query: 118 RSRGHAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R QS+ VT DL V L + V + G + L KE+Q+++ L N +++ Sbjct: 118 R----GQSVPVTTDLVVGGLKMELLTRNVTLDGQELLLQPKEFQLLKYLMEHANQVISRT 173 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 174 LLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQ 223 >gi|315299097|gb|EFU58351.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3] Length = 227 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGMRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221 >gi|170724335|ref|YP_001752023.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|169762338|gb|ACA75654.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 225 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L F V G D ++ + +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGVYLQQGLTEAGFTVDRVMTGTDALQQAQSEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 EVLRKIRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G AQ+ + DL V+L + G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 GGSAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFALLELLMRRRGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V I +LR K+ + K I T G GY++ Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFAPK-LIHTARGMGYMM 221 >gi|302871716|ref|YP_003840352.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302574575|gb|ADL42366.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 232 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 133/229 (58%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G+EV Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNNKVDLVILDIMMSDKDGYEV 63 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 L+ +R + + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++RR Sbjct: 64 LKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + GD+ V+ +TV+ + L+ KE+++++LL K L ++ L Sbjct: 124 SLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFILQR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|294851972|ref|ZP_06792645.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|294820561|gb|EFG37560.1| two-component system protein [Brucella sp. NVSL 07-0026] Length = 210 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 116/205 (56%), Gaps = 8/205 (3%) Query: 28 YVTDL---GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84 YV D GE+G L +DA++LD+GL + G V+ R + + PV +L+ Sbjct: 6 YVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGISVVERWRRSGRTMPVLMLTARDRW 65 Query: 85 EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQ 144 DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ GHA S V G L ++ + Sbjct: 66 SDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEFVCGPLHLDTKTSKASID 125 Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 G + LT EY+++ + + +++ + HLYD + + I+VF+ +LRKK+ Sbjct: 126 GVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDRDSNTIEVFVGRLRKKM--- 182 Query: 205 AGGKNYIETVWGRGYVLRENAKDET 229 G + IETV G GY +R + E Sbjct: 183 --GVDLIETVRGMGYRMRSGGEGEA 205 >gi|198284942|ref|YP_002221263.1| winged helix family two component transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666606|ref|YP_002427627.1| transcriptional regulator OmpR, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249463|gb|ACH85056.1| two component transcriptional regulator, winged helix family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518819|gb|ACK79405.1| transcriptional regulator OmpR, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 245 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG-- 59 +ILL++DD L + L+ + F V+ G+++ + E + L L +PG Sbjct: 6 KILLVDDDPRLRTMLVRYLEGQGFIVHAA---ASGVQMDRQLEREYYDLLLLDVLMPGED 62 Query: 60 -FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 F + + LRV + P+ +L+ + D+V+GL GADDY+SKPF +ELVARIRA++RR Sbjct: 63 GFSICQRLRVQEPHLPIIMLTARGDLADRVQGLDVGADDYLSKPFEPQELVARIRAVLRR 122 Query: 119 SRGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S+ S I+ G + LD++++ +I LT E+ ++ L+ L+++ Sbjct: 123 SQDLRSSDPTPGAIIFGPFRLALDSRSLWRNDEKISLTDSEFSILHALASHPWQPLSRDR 182 Query: 174 FLNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L + D P + IDVFI +LR+ + + G +YI+TVWGRGYVL + D T Sbjct: 183 LLAMTHGNEDATPSSRGIDVFISRLRRLVEDDPGEPHYIQTVWGRGYVLVPDGGDAT 239 >gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 225 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+D++ ++L L+ E F V GE+G++ + +D +ILD+ L + GF Sbjct: 3 KLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ DK+ G++ GADDY++KPFN EL+ARIRA++RR+ Sbjct: 63 VCREIRTFS-NIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I G+L +N+ + V +G RI LT KE++++ LL+ TK+ L+ + Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + V + KLR+K+ + YI T WG GY ++ Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225 >gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC 35316] gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC 35316] Length = 235 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD+ +A + L L+ E + + G + + L + +DA+ILDL L + G E Sbjct: 3 QILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSWDAVILDLMLPSVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R PV I+S SS D++ GL++GADDY++KPF+ +EL+ARI+A+ RR + Sbjct: 63 ICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQA 122 Query: 121 -GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G AQ+ I L+++ A+TV + G + LT +E++++ + ++ L Sbjct: 123 MGQAQNDGHIHAHGLTLDPLARTVRLNGQEVDLTPREFELLYFFARHPGEVFSRLELLEQ 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++ I +LR K+ A + TVWG+GY E Sbjct: 183 VWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAE 228 >gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 229 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IEDD+A+ + L L+ + V GEDG+EL + + DA+ILDL L +PG E Sbjct: 3 RVLIIEDDRAVREGVRLALRRQGHEVAAAATGEDGLELLRSFRPDAVILDLMLPGMPGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A P+ + + D V GL++GADDY+ KP L ARIRA++RR G Sbjct: 63 VCRRIR-AHHQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVLRRVGG 121 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 T GDL ++ TV QG + L E +++ LS +++ L Sbjct: 122 APDDHGTTRPEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + +++D + +LR K+ AG Y+ TV G GY Sbjct: 182 AVWEHNYHGDARLVDACVKRLRSKIGEPAGRPRYVHTVRGFGY 224 >gi|56459206|ref|YP_154487.1| response regulator [Idiomarina loihiensis L2TR] gi|56178216|gb|AAV80938.1| Response regulator (CheY,wHTH domains) [Idiomarina loihiensis L2TR] Length = 220 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD L ++EL L F V G I +DA++LDLGL D+ G Sbjct: 1 MELLLVEDDAMLGQAVELGLSERQFLVQRVRTGAAAISELNRTHYDAVVLDLGLPDLDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +LR ++ PV +L+ + V+ L +GADDY+ KPF+ EL AR+RA+VRR R Sbjct: 61 RVLASLRKKGMTLPVLVLTARDQSSEIVKQLDNGADDYMIKPFDMNELAARLRALVRRQR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A + GD+ ++ +V V+G ++L+ +E+++++ L +++ ++ Sbjct: 121 GYASPELKVGDIVLDDANHSVVVEGLAVNLSRREFELLKALMSAPERVHSRDKLEQVVFQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E ++V + LRKKL G K +I+T+ G GY L+ N Sbjct: 181 NEAQVESNALEVHVHNLRKKL----GHKEWIQTIRGIGYRLQCN 220 >gi|87122181|ref|ZP_01078064.1| Two component response regulator [Marinomonas sp. MED121] gi|86162501|gb|EAQ63783.1| Two component response regulator [Marinomonas sp. MED121] Length = 226 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 128/224 (57%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDDK +A I L+ + V + G+ G+ +DAIILD L + G Sbjct: 1 MKVLVVEDDKEVAQFIGSSLQQIGYVVDRCEDGKQGLLQASVETYDAIILDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + P+ +LS M+ + +V GLQ+GADDY++KPF EL AR+ + RR+ Sbjct: 61 NLLKTLRATGSNVPILLLSAMADVSHRVEGLQAGADDYLTKPFAFSELHARLEVMFRRNT 120 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+ + DLS+NL + + I L +EY+++E L ++ +T+ M L + Sbjct: 121 HESGEQTSLHCADLSLNLLTQEAKRAETLISLQPREYRLLEYLLRNQDRVVTRTMLLESV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D +P+ +IDV I +LR K+ + + I T+ GRGYV++ Sbjct: 181 WDYHFDPQTNVIDVHISRLRNKI-DKPFSQVLIHTIRGRGYVIK 223 >gi|94309410|ref|YP_582620.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353262|gb|ABF07351.1| DNA-binding response regulator in two-component regulatory system with Rmet_0464 [Cupriavidus metallidurans CH34] Length = 229 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDDVLADGLTRSLRQSGYAVDHVANGVEADSALSTQSFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR PV IL+ S++++V+GL GADDY++KPF EL AR+RA+VRR Sbjct: 61 EVLKRLRARSAMVPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +L+ G L+ + + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGATLMRHGPLAFDQVGRIAYLNEQMLDLSAREVGLLEILLTRSGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ G I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEV---GGIRIATVRGLGYCL 218 >gi|21220620|ref|NP_626399.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256788240|ref|ZP_05526671.1| two component system response regulator [Streptomyces lividans TK24] gi|289772132|ref|ZP_06531510.1| two component system response regulator [Streptomyces lividans TK24] gi|4539212|emb|CAB39870.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289702331|gb|EFD69760.1| two component system response regulator [Streptomyces lividans TK24] Length = 221 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 129/221 (58%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++ L++ F G+ E FD ++LD+GL GF Sbjct: 3 RILIVEDEERIASFVQKGLRANGFTTTAVADGDAAYEYALTGGFDLVVLDIGLPGRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 VLR LR A+++TPV +L+ S+ D V GL+ GADD+++KPF EEL+AR+R +R +R Sbjct: 63 VLRELREARVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ +G LS++L + +G + LT +E+ ++EL L++E L+H++ Sbjct: 123 APEVTVLRSGPLSLDLRTRRARSEGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ LRKKL G +ETV G GY L Sbjct: 183 YDFDPGSNIVDVYVRALRKKL-----GARQVETVRGMGYRL 218 >gi|325662837|ref|ZP_08151406.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086560|ref|ZP_08335638.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470889|gb|EGC74118.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium 4_1_37FAA] gi|330410393|gb|EGG89825.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 229 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A L+ F V V + GE G+E +FD +ILDL L + GFE Sbjct: 3 RILIVEDEETIADLERDYLELSGFEVEVANDGETGLEKALTDQFDLVILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICREVRQKK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + T D L ++ A+ V V G T KE+ ++ L+ N TK+ Sbjct: 122 LIGSNVQTNDIIEIRGLKIDTTARRVWVNGEEKAFTTKEFDLLTFLAGHPNHVYTKDELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEYDTSKPQYIETIWGVGYRFK 228 >gi|220908317|ref|YP_002483628.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864928|gb|ACL45267.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 224 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MRIL++EDD LA + +L N Y+ DL EDG + + E+D +ILD+ L + Sbjct: 1 MRILVVEDDLQLAEMLAEVLSDHN---YIVDLAEDGEKAWDYVNTLEYDLVILDVTLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G + R +TPV +L+ ++ DKV GL +GADDY+ KPF EL+AR+RA++R Sbjct: 58 DGIGFCQRWRGKGEATPVLMLTARDTLADKVTGLDAGADDYMVKPFELPELLARVRAMLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS + G L +N V + LT KEY ++ELL L++ + Sbjct: 118 RSGASVALNLSWGRLHLNPSTYEVTFDNRPLSLTPKEYALLELLVSNGRRVLSRTGIIER 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D P + + I LR KL A N+IETV G GY L++ Sbjct: 178 IWSLEDPPSEETVKSHIKGLRAKLREAGAPDNFIETVHGLGYRLQQ 223 >gi|299532922|ref|ZP_07046309.1| two component heavy metal response [Comamonas testosteroni S44] gi|298719146|gb|EFI60116.1| two component heavy metal response [Comamonas testosteroni S44] Length = 229 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 128/226 (56%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ LA ++ L E F V G DG+ L +D IILD L I G Sbjct: 1 MKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR ++ TPV +L+ + +ED+V+GLQ+GADDY+ KPF ELVARI A++RR Sbjct: 61 AVLAALRQSR-QTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGL 119 Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQ +++ DL ++L G R+ LT KE+ ++ LL R+ L++ Sbjct: 120 -QAQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELA 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D + E +++V + +LR KL +A + TV G GYVL Sbjct: 179 SQVWDMNFDSETNVVEVAVRRLRLKL-DAPFELPLLHTVRGMGYVL 223 >gi|330900238|gb|EGH31657.1| heavy metal response regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 228 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 130/230 (56%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L+ FNV G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV+R LR A S PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 EVIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S Q+ + GDL V+L + G RI LT KE+ ++ELL R+ L+K + + + Sbjct: 121 SSLQVQTSLQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +D + + +I+V I +LR K+ + K + T G GY+L A+DE Sbjct: 181 WDMNFDSDTNVIEVAIRRLRAKIDDDFEVK-LLHTCRGMGYML--EAQDE 227 >gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 224 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L I LK E ++V G++ ++ E+D +I+D+ + ++ G Sbjct: 1 MKILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYLDAAEYDLLIVDIMMPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR PV L+ + S +DKV GL SG DDY+ KPF +EL+ARIR+++RRS Sbjct: 61 TLVKKLRDGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRRSN 120 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ + DL+++ V G I LT KE+ +++ L + T L++E L H Sbjct: 121 AQQTARTRLTLADLTLDTRTHQVTRGGQEIALTPKEFSVLDYLLRNQGTVLSREQILEHA 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D E ++DV+I LRKK+ K + TV G GYVL+ Sbjct: 181 WDFSYEGYSNMVDVYIKTLRKKIDRDFEPK-LLHTVRGTGYVLK 223 >gi|206976678|ref|ZP_03237583.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206745164|gb|EDZ56566.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 225 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 132/225 (58%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I LK E + +G+ + ++D IILD + G E Sbjct: 3 QVLVIKNERSLAKKIVSGLKEEGHFILKLHNENEGLNIAYEQDWDIIILDWDSLSMSGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRKIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNC 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+ I DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 225 >gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 239 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G LS++ A+ V G RI LT +E+ ++ + ++ Sbjct: 126 LARDSRLDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ R E ++ I +LR K+ I TVWGRGY L Sbjct: 185 LNAVWGYRHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 232 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 14/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I+++EDD +A +EL L+ E+++ + G + L + ++D ++LD+ + + G E Sbjct: 3 KIMIVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDWDLVLLDVMIPCLSGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 VLR R+ TPV +L+ +S+ DKV GL GA+DYI+KPFN EEL+ARIRA +R Sbjct: 63 VLRRYRMRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALRTGAL 122 Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 S+ H +L DL VN + V G I LT +E+ ++ L K L + Sbjct: 123 HTGKSENSKKHEYAL---ADLLVNTATRQVTRGGKPIELTKREFDLLCYLLKNKRIVLNR 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E LN ++ + ++DV+I LRKK+ + I TV G GY ++E Sbjct: 180 EQLLNEVWGFEYAGDTNVVDVYIGYLRKKIDHGHETA-LIHTVRGVGYTMKETG 232 >gi|325277325|ref|ZP_08142950.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097515|gb|EGB95736.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 226 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 125/224 (55%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED + L F + GE G L + D +ILD+ L G+ Sbjct: 1 MKLLIVEDQARTGQYLRQGLNEAGFATELASDGETGQFLALSGDHDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A+R A TPV L+ ++ED+V GL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 QILQAVRQAGRDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q ++ DL ++L + E G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGSRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + +I+V I +LR K+ + K I TV G GYVL E Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDPHPNK-LIHTVRGMGYVLEE 223 >gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + G D +E Y+ + I+LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYATETAVDGLDALEKAGTYDPELIVLDVLMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R LR ++ PV +L+ ++ D+V GL +GADDY+ KPF +EL+ARIRA++RRS Sbjct: 72 AARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSSY 131 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + GDL ++L + V G R+ LT E+ ++E+ LT+E Sbjct: 132 AAAAGAPFADDDTMSFGDLRMDLTTREVTRGGRRVELTRTEFTLLEMFLAHPRQVLTREQ 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + AAG + TV G GYVLR Sbjct: 192 ILKAVWGFEFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLR 239 >gi|168215939|ref|ZP_02641564.1| DNA-binding response regulator KdpE [Clostridium perfringens NCTC 8239] gi|182381840|gb|EDT79319.1| DNA-binding response regulator KdpE [Clostridium perfringens NCTC 8239] Length = 237 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 128/231 (55%), Gaps = 7/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+KA+ + + L+ ++ + G G+ L D IILDLGL D+ G E+ Sbjct: 5 ILVIEDEKAIRNFVTATLEINSYQCHTAFNGSQGMILAISKRPDIIILDLGLPDMDGIEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 ++ +R + P+ ++S S DK+ L GADDY++KPF+ +EL+ARIR +R+ Sbjct: 65 IKKVREWS-NCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIRKMNYD 123 Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + Q + V GDL ++ + V + IHLT EY+++ LLS LT L Sbjct: 124 RNNTQEIQEFVNGDLKIDYTSGCVFLNEEEIHLTPIEYKLLCLLSKNVGRVLTHNYILKE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKD 227 ++ E ++ + VF+ LRKKLS A NYI+T G GY +LR KD Sbjct: 184 IWSSTCESDIPSLRVFMATLRKKLSKKAVDTNYIQTHIGVGYRLLRIQDKD 234 >gi|264678857|ref|YP_003278764.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|262209370|gb|ACY33468.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] Length = 238 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 127/233 (54%), Gaps = 6/233 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +A + L L+ E V G+DG+ + +DA++LDL L + G E Sbjct: 6 RILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSL-IVTGDLSVN---LD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQS + +G LSVN +D A+ + G R+ LT +E+ ++ + + ++ L Sbjct: 126 LAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 N ++ + E ++ I +LR K+ I TVWGRGY E + E Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVELNPAQPTRILTVWGRGYKFAETGEGE 238 >gi|83644483|ref|YP_432918.1| response regulator [Hahella chejuensis KCTC 2396] gi|83632526|gb|ABC28493.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 223 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 129/220 (58%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED + L SI+ L+ V + G L + +FD IILDL L ++ G Sbjct: 1 MHILVVEDSELLGESIQARLQKMGHGVDWVNNGRQANGLLQHQQFDLIILDLNLPELGGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR K +TPV IL+ ++D+++ L +GADDY++KPF+ EL AR R ++RR++ Sbjct: 61 QILSELRKRKDTTPVLILTAREQVDDRIKLLDAGADDYLTKPFDFGELEARCRVLMRRNQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L G+LS + AK V V ++ L +E++++E+ ++KE + L+ Sbjct: 121 GFSSNLSRHGNLSFDRSAKAVYVNDEKLDLKNREFRLLEVFLGNLGRVMSKEELADRLFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + P I+++I +LRKKL++++ I T+ G GY+ Sbjct: 181 FDESPGPNAIELYIARLRKKLADSS---VQIRTLRGLGYL 217 >gi|325277746|ref|ZP_08143310.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097120|gb|EGB95402.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 233 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD AL+ I L+ +F+V V G+ ++ + + D +ILDL L + G +V Sbjct: 4 ILLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQKPDLVILDLMLPGLDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +L+ D+V GL+ GADDY+SKP L+AR+R ++RRS + Sbjct: 64 CRLLRQESQGLPILMLTARDDSHDQVLGLEMGADDYVSKPCEPRVLLARVRTLLRRSSVN 123 Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 LIV G L ++L +TV +G + L+ EY ++ +L+ L ++ L L Sbjct: 124 EPRLDHDLIVIGGLRIDLAERTVSWRGDEVELSSGEYNLLVVLARNAGEVLNRDRILQQL 183 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G D + +DV I KLR+K + AG I+TVWG+GY+ Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 226 >gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] Length = 235 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 127/230 (55%), Gaps = 4/230 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G ++ + +DA+ILDL L ++ G E Sbjct: 3 QILLVEDDHDIAALLRLNLEDEGYAITHQPDGGKALQCLETQPWDAVILDLMLPNVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R PV I+S SS D++ GL++GADDY++KPF+ +EL+ARI+A+ RR + Sbjct: 63 ICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQA 122 Query: 121 -GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G AQ+ I L+++ A+TV + G + LT +E++++ + ++ L Sbjct: 123 MGQAQTAGHIQAHGLTLDPLARTVRLHGQDVDLTPREFELLYFFARHPGEVFSRLALLEQ 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + E ++ I +LR K+ A I TVWG+GY E D Sbjct: 183 VWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKFAELNHD 232 >gi|313832563|gb|EFS70277.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] Length = 243 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED+ +L + + ++ E ++V + G + + D I+LD+ L+D G Sbjct: 18 IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV+R +R+ + + L+ + ++ GL +G DDY++KPF+ EE++AR+RA +RRS Sbjct: 78 EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRAPLRRSG 137 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S++ GDL+++ D++ V G IHLT E++++ L+K L+ Sbjct: 138 ATEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ G K I T+ G GYVL+ Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHKPMIHTMRGAGYVLK 240 >gi|242237847|ref|YP_002986028.1| DNA-binding transcriptional regulator BasR [Dickeya dadantii Ech703] gi|242129904|gb|ACS84206.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 222 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 131/224 (58%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + +++E + ++ L + I+LDLGL D G Sbjct: 1 MKLLIVEDDALLQEGLLQAMRNEGYTCDCATTAKEADALINSAHYSLIVLDLGLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + S PV IL+ +++++V GL GADDY+ KPF EL+ARIRA++RR + Sbjct: 61 TLLTRWRNNQHSQPVLILTARDTVDERVTGLNIGADDYMIKPFALSELLARIRALIRRHQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++LI +++++L+++ V + + LT KE+ ++ L L+ + + +E+ +Y+ Sbjct: 121 GSSENLIQVDNITLDLNSQQVMLDSKPVILTPKEFAILSRLILKAGSQVHREVLHQDIYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D+P ++V I LR+K+ GKN I+T+ G GY+L ++ Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI-----GKNRIKTLRGFGYLLTKD 219 >gi|110798945|ref|YP_695660.1| DNA-binding response regulator KdpE [Clostridium perfringens ATCC 13124] gi|168209564|ref|ZP_02635189.1| DNA-binding response regulator KdpE [Clostridium perfringens B str. ATCC 3626] gi|168213944|ref|ZP_02639569.1| DNA-binding response regulator KdpE [Clostridium perfringens CPE str. F4969] gi|182626561|ref|ZP_02954308.1| DNA-binding response regulator KdpE [Clostridium perfringens D str. JGS1721] gi|110673592|gb|ABG82579.1| DNA-binding response regulator KdpE [Clostridium perfringens ATCC 13124] gi|170712322|gb|EDT24504.1| DNA-binding response regulator KdpE [Clostridium perfringens B str. ATCC 3626] gi|170714541|gb|EDT26723.1| DNA-binding response regulator KdpE [Clostridium perfringens CPE str. F4969] gi|177908095|gb|EDT70665.1| DNA-binding response regulator KdpE [Clostridium perfringens D str. JGS1721] Length = 237 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 128/231 (55%), Gaps = 7/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+KA+ + + L+ ++ + G G+ L D IILDLGL D+ G E+ Sbjct: 5 ILVIEDEKAIRNFVTATLEINSYKCHTAFNGSQGMILAISKRPDIIILDLGLPDMDGIEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 ++ +R + P+ ++S S DK+ L GADDY++KPF+ +EL+ARIR +R+ Sbjct: 65 IKKVREWS-NCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIRKMNYD 123 Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + Q + V GDL ++ + V + IHLT EY+++ LLS LT L Sbjct: 124 RNNTQEIQEFVNGDLKIDYTSGCVFLNEEEIHLTPIEYKLLCLLSKNVGRVLTHNYILKE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKD 227 ++ E ++ + VF+ LRKKLS A NYI+T G GY +LR KD Sbjct: 184 IWSSTCESDIPSLRVFMATLRKKLSKKAMDTNYIQTHIGVGYRLLRIQDKD 234 >gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118] gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius ACS-116-V-Col5a] Length = 236 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++VY GE+ ++ K E D I+LDL L I G E Sbjct: 3 KILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVKEVEPDLILLDLMLPKIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRQSA 121 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A S I GDL+++ +A TV G RI LT +E++++ L+ +T+E Sbjct: 122 VAAKSSAEDDKNSEITVGDLTIHPEAYTVSKNGQRIELTHREFELLHYLAQHLGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 182 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYLR 231 >gi|149916162|ref|ZP_01904684.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Roseobacter sp. AzwK-3b] gi|149810017|gb|EDM69866.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Roseobacter sp. AzwK-3b] Length = 219 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 122/224 (54%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57 MRILLIEDD L ++ + ++ +V +VT D +D + + +D I+LDL L D Sbjct: 1 MRILLIEDDTTLGAAVRDQIAADGRSVDWVTRLDAADDAL---RATSYDLILLDLMLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L+ALR+ TPV IL+ + + D++ GL +GADDY+ KPF+ EL ARI ++ R Sbjct: 58 RGIGFLKALRLRGDVTPVIILTALDQVTDRIEGLNAGADDYLVKPFDLAELSARIGSVAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G+ +I G + V+L A +V G + LT +E+ + E R L+K Sbjct: 118 RYCGNPNPIISHGPIDVDLAAHSVHRDGKPVQLTAREWALFEAFLARPGQLLSKAQLEEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY+ E E I+V + +LRKKL G IET G GY L Sbjct: 178 LYEFGAEVESNTIEVHVSRLRKKL-----GAGIIETERGMGYRL 216 >gi|170738500|ref|YP_001767155.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168192774|gb|ACA14721.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 220 Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+ + L V D +F A+ILDL L D G Sbjct: 1 MRILVVEDDPILSDGLRAGLALSGAAVDCVATCADADAALTASQFGAVILDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR TPV +L+ ++ D++ GL GADDY+ KPF+ +EL ARIRA+VRR+ Sbjct: 61 DVLRGLRGRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G + ++ + TV V G + ++ +E+ ++ L R + +K LY Sbjct: 121 GRAAAGLEHGGIRLDPGSLTVTVDGAPVTVSRREFMVLAALMERPSVLRSKAELEERLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E E ++V + LR K+ GK+ IETV G GY +R A Sbjct: 181 WQEEVESNAVEVHVHNLRTKI-----GKHAIETVRGLGYRMRAPA 220 >gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] Length = 239 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I+ DL + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVAEAPDEDSILIADLKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|120405958|ref|YP_955787.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958776|gb|ABM15781.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 233 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 119/214 (55%), Gaps = 6/214 (2%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F+VY G + + DAI+LD+ + + G V+ ALR P Sbjct: 22 SLERGLRLSGFDVYTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL----IVTG 130 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR RG + I G Sbjct: 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR-RGSTATFSSETITVG 140 Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190 L V++ + V G + LT +E+ ++ +L+ K L++ L ++ + ++ Sbjct: 141 PLEVDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVV 200 Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DVFI LR+KL A G + TV G G+VLR+ Sbjct: 201 DVFIGYLRRKL-EANGAPRLLHTVRGVGFVLRQQ 233 >gi|237737185|ref|ZP_04567666.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229421047|gb|EEO36094.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 227 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L I LK E ++V GE+ + +D I++D+ + + G+ Sbjct: 1 MRVLVVEDERDLNRVICKKLKVEGYSVDACYDGEEALLYIDGATYDIILMDIMMPKLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R K STPV L+ +IED+V+GL GADDYI KPF+ +EL+ARIR ++RR+ Sbjct: 61 EVLEKMRREKNSTPVLFLTAKDAIEDRVKGLDLGADDYIVKPFHFDELMARIRVLIRRNH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + DL ++ + V+ I L+ KE+ ++E + + L++E H+++ Sbjct: 121 GSVSNELRVADLVMDCATRIVKRGDKEIDLSAKEFAILEYMMQNQGVVLSREKLEEHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +IDV+I LR K+ K I T+ G GYVL++ Sbjct: 181 YDYQGASNMIDVYIRYLRIKMDKDFEPK-LIHTIRGVGYVLKD 222 >gi|297567182|ref|YP_003686154.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851631|gb|ADH64646.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 219 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 ++L++EDD + + L+S V DG+E F E D ++LD+GL G+ Sbjct: 4 KVLVVEDDPGIRMLVATTLQSAGLAVLEA---RDGVEAMDFIPEADLVVLDVGLPRQSGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL A+R PV +L+G S ++VRGL+SGADDY++KPF+ EL AR++A++RRS Sbjct: 61 EVLEAIRQNFGQLPVLMLTGHSDETNRVRGLESGADDYLTKPFSVRELAARVKALLRRS- 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LIV G L ++ ++ + +HLT E+ ++ L+ ++E L + Sbjct: 120 -GRLGLIVMGSLKLSPGSREAWLDNDTLHLTPLEFDLLMTLAQAPGRIFSREELLVRHWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +++D++I +LRKKL + + +ETVWG+GY LR + Sbjct: 179 AEYEGTERVVDIYIGRLRKKLLTES---DRLETVWGQGYRLRSD 219 >gi|322373103|ref|ZP_08047639.1| DNA-binding response regulator CiaR [Streptococcus sp. C150] gi|321278145|gb|EFX55214.1| DNA-binding response regulator CiaR [Streptococcus sp. C150] Length = 224 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++S+ L + V D G++G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GDEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 TVLKELREKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + GD+ VNL + V+ + L GKE+ ++ +N L K + L+ Sbjct: 121 KFDQNTLSFGDVRVNLSTNSTFVEDKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + V +++V++ K+RKKL N ++T+ GY+L+ Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTDFAAN-LQTLRSVGYILK 221 >gi|270263020|ref|ZP_06191290.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042708|gb|EFA15802.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 220 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDDK + I+ L FN+ + TD G G + +DA+ILDL L + G Sbjct: 1 MRILLIEDDKLIGDGIKAGLTKLGFNLDWFTD-GLVGKSALESAPYDAVILDLSLPGLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++LR R A PV IL+ ++E +V GLQSGADDY+ KPF E+ AR++A++RR Sbjct: 60 LDLLRQWRQAGHDVPVLILTARDALEQRVSGLQSGADDYLCKPFALTEVAARLQALIRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +V G+L + ++V G + LT +E ++EL K L + + LY Sbjct: 120 HGQLMPQLVHGNLVFDSATRSVNCNGEPVTLTPRELAVLELFLHNKGRVLARSLIQEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + DE ++V I LR+KL NA +I T+ G GY L E Sbjct: 180 NWDDEVSSNAVEVHIHHLRRKLGNA-----FIRTIHGVGYTLGE 218 >gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ +A +++ L++E F V + GEDG+ L + ++D ++LD+ L + G+ Sbjct: 1 MRVLVVEDERRMAAALQRGLQAEGFAVDLAHDGEDGLHLARQGDYDVVVLDIMLPRLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR + P+ +LS D GL GADDY++KPF+ LVAR+RA++RR Sbjct: 61 NVCKQLRAEENWVPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ GDLS++ + V + LT +E+ ++E L R + ++K L H++D Sbjct: 121 NRRPSVLRAGDLSLDPARRRVSRGETPVELTPREFALLEYLMRRHDEVVSKTEILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + +++V++ LR+K+ + + ++TV G GY L Sbjct: 181 TFDT-DPNVVEVYVGYLRRKI-DVPFSRTALQTVRGAGYRL 219 >gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 131/234 (55%), Gaps = 12/234 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ ++ I L ++V V G+ G+++ F IILD+ L + G Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +ALR +++TP+ +L+ + S E+ V GL SGADDY+ KPF + EL+ARIR+++RR+ Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 121 GHAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 A +++ DL ++L+ K+ G I LT EY+++E + L Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ L +++ K++DV++ LRKK+ N I+TV G GY+L+E Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKV-NRKDQPALIQTVVGMGYMLKE 233 >gi|221369103|ref|YP_002520199.1| Two component transcriptional regulator, winged helix family precursor [Rhodobacter sphaeroides KD131] gi|221162155|gb|ACM03126.1| Two component transcriptional regulator, winged helix family precursor [Rhodobacter sphaeroides KD131] Length = 219 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L +I + +E ++T + ED + +D ++LDL L D G Sbjct: 1 MRILLVEDDPGLGGAIRDQISAEGHAADWMTGV-EDALASVATTAYDLVLLDLNLPDGSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + LR LR K + PV IL+ + +++ GL +GADDY+ KPF+ EL ARI A+ RR Sbjct: 60 LDFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ + G L +++ + +E G + L+ +E+ + E L R + ++K LY Sbjct: 120 AGNPSPRLALGPLEIDIADRRIEGPGGEVTLSQREWAIFEALVKRPGSVVSKTQLEETLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V++ +LRKKL G++ IET G GY L Sbjct: 180 AFDAEVESNTIEVYVSRLRKKL-----GRDRIETRRGMGYRL 216 >gi|238028833|ref|YP_002913064.1| DNA-binding response regulator [Burkholderia glumae BGR1] gi|237878027|gb|ACR30360.1| DNA-binding response regulator [Burkholderia glumae BGR1] Length = 225 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L IEDD+ A+ I LK F V G DG+ E+D I LD L + G Sbjct: 3 RVLTIEDDEITANEIVGELKDRGFAVEWVANGRDGMARALSDEYDVITLDRMLPGVDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 ++ +R + TPV +LS + ++++VRGL++G DDY++KPF+ EE+ AR+ ++RRS+ Sbjct: 63 IVTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMTARLEVLLRRSQA 122 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ + G L+++L A+ G I L EY+++E + T+T+ M + Sbjct: 123 SPAQSETTLEVGPLALDLIARKATRDGAEIALLPTEYRVLEYMMRNAGQTITRTMLFEAV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P +IDV + +LR+K+ + I TV G GY+L Sbjct: 183 WGYHFDPGTNLIDVHMGRLRRKI-DPPDAPPMIRTVRGAGYIL 224 >gi|16800482|ref|NP_470750.1| two-component response regulator [Listeria innocua Clip11262] gi|16803417|ref|NP_464902.1| two-component response regulator [Listeria monocytogenes EGD-e] gi|46907605|ref|YP_013994.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47094403|ref|ZP_00232093.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|47095961|ref|ZP_00233564.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|116872809|ref|YP_849590.1| two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|217964476|ref|YP_002350154.1| two-component response regulator [Listeria monocytogenes HCC23] gi|224499953|ref|ZP_03668302.1| two-component response regulator [Listeria monocytogenes Finland 1988] gi|226223978|ref|YP_002758085.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254824563|ref|ZP_05229564.1| two-component system response regulator [Listeria monocytogenes FSL J1-194] gi|254827638|ref|ZP_05232325.1| two-component system response regulator [Listeria monocytogenes FSL N3-165] gi|254829864|ref|ZP_05234519.1| two-component response regulator [Listeria monocytogenes 10403S] gi|254852575|ref|ZP_05241923.1| two-component system response regulator [Listeria monocytogenes FSL R2-503] gi|254898457|ref|ZP_05258381.1| two-component response regulator [Listeria monocytogenes J0161] gi|254912052|ref|ZP_05262064.1| two-component response regulator [Listeria monocytogenes J2818] gi|254932562|ref|ZP_05265921.1| two-component system response regulator [Listeria monocytogenes HPB2262] gi|254936379|ref|ZP_05268076.1| two-component system response regulator [Listeria monocytogenes F6900] gi|254993108|ref|ZP_05275298.1| two-component response regulator [Listeria monocytogenes FSL J2-064] gi|255025837|ref|ZP_05297823.1| two-component response regulator [Listeria monocytogenes FSL J2-003] gi|255030066|ref|ZP_05302017.1| two-component response regulator [Listeria monocytogenes LO28] gi|255521764|ref|ZP_05389001.1| two-component response regulator [Listeria monocytogenes FSL J1-175] gi|284801763|ref|YP_003413628.1| two-component response regulator [Listeria monocytogenes 08-5578] gi|284994905|ref|YP_003416673.1| two-component response regulator [Listeria monocytogenes 08-5923] gi|289434659|ref|YP_003464531.1| two-component DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290893514|ref|ZP_06556497.1| two-component system response regulator [Listeria monocytogenes FSL J2-071] gi|300766397|ref|ZP_07076354.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|315282247|ref|ZP_07870699.1| response regulator ArlR [Listeria marthii FSL S4-120] gi|315303046|ref|ZP_07873754.1| response regulator ArlR [Listeria ivanovii FSL F6-596] gi|16410793|emb|CAC99455.1| two-component response regulator [Listeria monocytogenes EGD-e] gi|16413887|emb|CAC96645.1| two-component response regulator [Listeria innocua Clip11262] gi|46880873|gb|AAT04171.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47015707|gb|EAL06637.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|47017224|gb|EAL08067.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116741687|emb|CAK20811.1| two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|217333746|gb|ACK39540.1| two-component response regulator [Listeria monocytogenes HCC23] gi|225876440|emb|CAS05149.1| two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600017|gb|EEW13342.1| two-component system response regulator [Listeria monocytogenes FSL N3-165] gi|258605888|gb|EEW18496.1| two-component system response regulator [Listeria monocytogenes FSL R2-503] gi|258608970|gb|EEW21578.1| two-component system response regulator [Listeria monocytogenes F6900] gi|284057325|gb|ADB68266.1| two-component response regulator [Listeria monocytogenes 08-5578] gi|284060372|gb|ADB71311.1| two-component response regulator [Listeria monocytogenes 08-5923] gi|289170903|emb|CBH27445.1| two-component DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290556859|gb|EFD90390.1| two-component system response regulator [Listeria monocytogenes FSL J2-071] gi|293584121|gb|EFF96153.1| two-component system response regulator [Listeria monocytogenes HPB2262] gi|293590019|gb|EFF98353.1| two-component response regulator [Listeria monocytogenes J2818] gi|293593802|gb|EFG01563.1| two-component system response regulator [Listeria monocytogenes FSL J1-194] gi|300512901|gb|EFK39991.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|307570959|emb|CAR84138.1| two component response regulator [Listeria monocytogenes L99] gi|313608901|gb|EFR84665.1| response regulator ArlR [Listeria monocytogenes FSL F2-208] gi|313614107|gb|EFR87799.1| response regulator ArlR [Listeria marthii FSL S4-120] gi|313619043|gb|EFR90859.1| response regulator ArlR [Listeria innocua FSL S4-378] gi|313623855|gb|EFR93974.1| response regulator ArlR [Listeria innocua FSL J1-023] gi|313628581|gb|EFR97006.1| response regulator ArlR [Listeria ivanovii FSL F6-596] gi|313633342|gb|EFS00188.1| response regulator ArlR [Listeria seeligeri FSL N1-067] gi|328467515|gb|EGF38584.1| two-component DNA-binding response regulator [Listeria monocytogenes 1816] gi|328475027|gb|EGF45817.1| two-component DNA-binding response regulator [Listeria monocytogenes 220] gi|332311819|gb|EGJ24914.1| Two-component response regulator [Listeria monocytogenes str. Scott A] Length = 226 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 91/225 (40%), Positives = 135/225 (60%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+K LA IEL L+ EN+ V + G G+EL E+DAI+LDL L + G E Sbjct: 3 RILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+R+++RR Sbjct: 63 VCRRVRQVK-QTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVEN 121 Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 QS T +L V + + V+ I LT +EY+++ L N LT+E+ LN Sbjct: 122 AEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLLNK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV++ LR K+ + ++YI+TV G GYV+R Sbjct: 182 VWGYETEVETNVVDVYVRYLRNKIDH-PDEESYIQTVRGTGYVMR 225 >gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 135/228 (59%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + I + L+ ENFNV G D +EL K D I+LD+ + I GFE Sbjct: 5 KVLIVDDEINITELISVNLE-ENFNVVCCHNGLDAVELAKKELPDIILLDIMIPGIDGFE 63 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R +R A P+ +L+ DKVRGL+ GADDYI+KPF EL+ARI A++RRS Sbjct: 64 VCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDAVLRRS 123 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +++ GD+ ++ D V+ +G I LT +E+++++ L+ K +++E+ Sbjct: 124 DMISASNTSDNIMQIGDIEIDTDKYEVKKKGTVIELTLREFKLLQTLAKNKGNLVSREVL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + + + +DV I KLRKKL + YIETV G GY+++ Sbjct: 184 LSEVWGCGNLGDSRTLDVHIRKLRKKLEDNDKFPKYIETVRGLGYMIK 231 >gi|323976449|gb|EGB71539.1| heavy metal response regulator [Escherichia coli TW10509] Length = 227 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLIVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221 >gi|170746673|ref|YP_001752933.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170653195|gb|ACB22250.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 226 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 122/221 (55%), Gaps = 2/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+ +A I L F V G G+ FD I+LD L +I G + Sbjct: 4 VLVVEDDRRVAAEIGSALAEYGFQVDEAPSGSIGLRKALDGNFDVIVLDRMLPEIDGLSL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 L LR AK+STPV ILS +S++ ++V GL++G DDY++KPF EL AR+ A+ RR Sbjct: 64 LTELRAAKVSTPVLILSALSAVNERVDGLRAGGDDYLAKPFEFIELTARVDALARRKMAA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + +V GDL ++L + + G I L KE+ +IE L T ++++M ++ Sbjct: 124 EAVNELVVGDLRLDLIERVLYCAGREIELLPKEFAIIEFLMQNAGTLVSRKMIFESVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +IDV I K+RKKL + G I TV G++LR Sbjct: 184 SFNHQSSVIDVHIGKIRKKL-DPDGLNPRIHTVRNTGFILR 223 >gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 230 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G++ FD IILD+ + + G EV Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|264680517|ref|YP_003280427.1| two component heavy metal response [Comamonas testosteroni CNB-2] gi|262211033|gb|ACY35131.1| two component heavy metal response [Comamonas testosteroni CNB-2] Length = 235 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 128/226 (56%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ LA ++ L E F V G DG+ L +D IILD L I G Sbjct: 7 MKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR ++ TPV +L+ + +ED+V+GLQ+GADDY+ KPF ELVARI A++RR Sbjct: 67 AVLAALRQSR-QTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGL 125 Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQ +++ DL ++L G R+ LT KE+ ++ LL R+ L++ Sbjct: 126 -QAQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELA 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D + E +++V + +LR KL +A + TV G GYVL Sbjct: 185 SQVWDMNFDSETNVVEVAVRRLRLKL-DAPFELPLLHTVRGMGYVL 229 >gi|15608173|ref|NP_215549.1| two component transcriptional regulator TRCR [Mycobacterium tuberculosis H37Rv] gi|31792225|ref|NP_854718.1| two component transcriptional regulator TRCR [Mycobacterium bovis AF2122/97] gi|121636963|ref|YP_977186.1| two component transcriptional regulator trcR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660816|ref|YP_001282339.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis H37Ra] gi|148822242|ref|YP_001286996.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis F11] gi|167968534|ref|ZP_02550811.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis H37Ra] gi|215402850|ref|ZP_03415031.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 02_1987] gi|215410638|ref|ZP_03419446.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 94_M4241A] gi|215426317|ref|ZP_03424236.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T92] gi|215429895|ref|ZP_03427814.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis EAS054] gi|215445184|ref|ZP_03431936.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T85] gi|218752706|ref|ZP_03531502.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis GM 1503] gi|219556903|ref|ZP_03535979.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T17] gi|224989435|ref|YP_002644122.1| two component transcriptional regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253799935|ref|YP_003032936.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 1435] gi|254363948|ref|ZP_04979994.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis str. Haarlem] gi|254550019|ref|ZP_05140466.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185946|ref|ZP_05763420.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis CPHL_A] gi|260200062|ref|ZP_05767553.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T46] gi|260204253|ref|ZP_05771744.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis K85] gi|289442456|ref|ZP_06432200.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T46] gi|289446614|ref|ZP_06436358.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis CPHL_A] gi|289569014|ref|ZP_06449241.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T17] gi|289573673|ref|ZP_06453900.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis K85] gi|289744771|ref|ZP_06504149.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 02_1987] gi|289749566|ref|ZP_06508944.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T92] gi|289753095|ref|ZP_06512473.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis EAS054] gi|289757118|ref|ZP_06516496.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T85] gi|289761171|ref|ZP_06520549.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis GM 1503] gi|294995222|ref|ZP_06800913.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 210] gi|297633562|ref|ZP_06951342.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN 4207] gi|297730547|ref|ZP_06959665.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN R506] gi|298524531|ref|ZP_07011940.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis 94_M4241A] gi|306775170|ref|ZP_07413507.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu001] gi|306781915|ref|ZP_07420252.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu002] gi|306783731|ref|ZP_07422053.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu003] gi|306788086|ref|ZP_07426408.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu004] gi|306792419|ref|ZP_07430721.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu005] gi|306796821|ref|ZP_07435123.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu006] gi|306802708|ref|ZP_07439376.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu008] gi|306967087|ref|ZP_07479748.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu009] gi|306971277|ref|ZP_07483938.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu010] gi|307079006|ref|ZP_07488176.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu011] gi|307083567|ref|ZP_07492680.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu012] gi|313657876|ref|ZP_07814756.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN V2475] gi|1869995|emb|CAB06846.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium tuberculosis H37Rv] gi|2979514|gb|AAC06144.1| response regulator homolog TrcR [Mycobacterium tuberculosis] gi|31617813|emb|CAD93922.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium bovis AF2122/97] gi|121492610|emb|CAL71078.1| Two component transcriptional regulator trcR [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134149462|gb|EBA41507.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis str. Haarlem] gi|148504968|gb|ABQ72777.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis H37Ra] gi|148720769|gb|ABR05394.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis F11] gi|224772548|dbj|BAH25354.1| two component transcriptional regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253321438|gb|ACT26041.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 1435] gi|289415375|gb|EFD12615.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T46] gi|289419572|gb|EFD16773.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis CPHL_A] gi|289538104|gb|EFD42682.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis K85] gi|289542768|gb|EFD46416.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T17] gi|289685299|gb|EFD52787.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis 02_1987] gi|289690153|gb|EFD57582.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis T92] gi|289693682|gb|EFD61111.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis EAS054] gi|289708677|gb|EFD72693.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis GM 1503] gi|289712682|gb|EFD76694.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis T85] gi|298494325|gb|EFI29619.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis 94_M4241A] gi|308216318|gb|EFO75717.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu001] gi|308325370|gb|EFP14221.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu002] gi|308331512|gb|EFP20363.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu003] gi|308335318|gb|EFP24169.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu004] gi|308339126|gb|EFP27977.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu005] gi|308342797|gb|EFP31648.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu006] gi|308350622|gb|EFP39473.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu008] gi|308355255|gb|EFP44106.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu009] gi|308359209|gb|EFP48060.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu010] gi|308363111|gb|EFP51962.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu011] gi|308366776|gb|EFP55627.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu012] gi|323720534|gb|EGB29616.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis CDC1551A] gi|326904738|gb|EGE51671.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis W-148] gi|328459679|gb|AEB05102.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 4207] Length = 257 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V V G++ I D ++LD+ L D+ G Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR +R + + TP L+ S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS Sbjct: 92 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS- 150 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H A + GDL+++ ++ V G I L+ E++++ L L++ L+ Sbjct: 151 SHLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILD 210 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ I+D++I LRKK+ + + I TV G GY+LR Sbjct: 211 RVWNYDFAGRTSIVDLYISYLRKKIDSDR--EPMIHTVRGIGYMLR 254 >gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + + L + FN + G++ + L + + + I+LD+ L DI GFE Sbjct: 4 KILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEKPEVILLDIMLPDIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + + + +++ DK+RGL+ GADDYI KPFN EL+ARI+A++RR+ Sbjct: 64 ICKRVSRQHPEISIIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAVIRRTNK 123 Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S +V G L ++ + + V G + LT +E+ ++++ N LT++ LN ++ Sbjct: 124 PDNSNEVVIGPLRIDYNCRQVYKNGVVLDLTPREFCLLKVFVNNLNKALTRDEILNWVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + K +DV + +LR+K+ + YIETVWG+GY+ R+ Sbjct: 184 EDYIGDTKTVDVHVRRLREKIEDDPSHPKYIETVWGKGYLFRK 226 >gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 200] gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 200] Length = 241 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE G++ FD +ILD+ + + G EV Sbjct: 16 ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLDGLEV 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ ELVAR++A +RRS + Sbjct: 76 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELVARVKAGIRRSTKY 134 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G+ + LT KE+++++L +N TK Sbjct: 135 SATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 195 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 238 >gi|229199233|ref|ZP_04325911.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228584250|gb|EEK42390.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 222 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I L E + +G+ + ++D IILD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIAYEQDWDIIILDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R+ K+ TP+ I++ S ED V GLQ+GADDYI KPF KEELVAR++AI+RRS + Sbjct: 61 CRKIRLVKM-TPIIIVTDNISSEDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNCN 119 Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ I DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 222 >gi|167625511|ref|YP_001675805.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167355533|gb|ABZ78146.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 224 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L + LK + TD + L K +D +ILD+GL D G Sbjct: 1 MKLLLVEDNTLLVEELIKQLKQAGYVTDTTDKVSEADYLIKETNYDCVILDIGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R I TPV +L+ S +KV G SGADDY+ KPF+ +EL+ RI+A+++R+ Sbjct: 61 ELLETWREQGIHTPVIMLTARSQWHEKVEGFNSGADDYLGKPFHTQELLVRIQALIQRAH 120 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A + + ++++ ++V V LT E++++++ + L+K + Sbjct: 121 GKANTPNKQLTYAGVALDEGQQSVTVGEQTYELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LY DE E +++V++ LRKKL GK IET G+GY+ Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220 >gi|66044744|ref|YP_234585.1| heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|63255451|gb|AAY36547.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] Length = 228 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 130/230 (56%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L+ FNV G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR S PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 EVIRRLRTVGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+ + GDL V+L + G RI LT KE+ ++ELL R+ L+K + + + Sbjct: 121 SNLPVQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +D + + +I+V I +LR K+ + K + T G GY+L +A+DE Sbjct: 181 WDMNFDSDTNVIEVAIRRLRAKIDDDFEAK-LLHTCRGMGYML--DAQDE 227 >gi|229105162|ref|ZP_04235813.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-28] gi|228678343|gb|EEL32569.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-28] Length = 230 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G+ + LT KE+++++L +N TK Sbjct: 124 STTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|152994266|ref|YP_001339101.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150835190|gb|ABR69166.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 221 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 MR+LLIED L ++ + + V D ++ F E +D ++LDL Sbjct: 1 MRVLLIEDTTGLGEAVRDQICDDGHAV-------DWVQSLNFAEASVQATSYDLVLLDLM 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D GF+ L++LR + STPV IL+ + D++ GL +GADDY+ KPF+ EL AR+ Sbjct: 54 LPDGNGFDFLKSLRKSGNSTPVIILTARDQVSDRIEGLNAGADDYLIKPFDLSELSARVG 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A+ RR RG L+ G L ++L ++ G + LT +E+ + E L R T L++ Sbjct: 114 AVARRYRGDPNPLVKLGHLEIDLGEHRIKANGLPVELTAREWALFEGLVQRPGTLLSRSQ 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + LY E E I+V+I +LRKKL G++ I TV GY L Sbjct: 174 LEDRLYQFGAEIESNTIEVYISRLRKKL-----GRDVIITVRNMGYRL 216 >gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 129/225 (57%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD L +++ L E+++V + GE +E+ + + D I+LD+ L + GFE Sbjct: 4 KVLIVEDDPNLLKTLKYNLNKESYDVVIAADGEQALEVARKEKPDLILLDIMLPKLSGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR ++++P+ +L+ + DK+ GL+ GADDY++KPF+ EL+AR+RA++RR Sbjct: 64 VCRILR-KEMNSPILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAMLRRTQI 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ +I GD+ V++D + + L KE+ ++ L+ K ++E L Sbjct: 123 METKPSEDKIIKIGDIRVDIDRHQASLAEVILELKPKEFDLLAFLARNKGLVFSREQLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + +DV I LR+K+ N G Y+ TV G GY L Sbjct: 183 KVWGYDYAGDTRTVDVHIRWLRQKIENDPGNPTYLVTVRGTGYKL 227 >gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 230 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD +A ++ L++E + V + G +G+ L + E +ILD+ L + G + Sbjct: 5 QILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLALARAGEAALVILDVMLPGMTGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + ++LR PV +L+ +SSIEDKV GL+ GADDY++KPF EEL+ARI A++RR Sbjct: 65 LCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGRE 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A +L V DL ++L+ G I LT KE +ELL ++E L+++ Sbjct: 125 QRPRATTLQVA-DLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++P ++DV++ +LR K+ + ++TV G GY L Sbjct: 184 WGMHEDPLTNVVDVYVRRLRSKI-DEGHPLALLKTVRGLGYRL 225 >gi|228993268|ref|ZP_04153184.1| Uncharacterized sensory transduction protein ycbL [Bacillus pseudomycoides DSM 12442] gi|228999318|ref|ZP_04158898.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock3-17] gi|229006873|ref|ZP_04164505.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock1-4] gi|228754366|gb|EEM03779.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock1-4] gi|228760515|gb|EEM09481.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock3-17] gi|228766336|gb|EEM14979.1| Uncharacterized sensory transduction protein ycbL [Bacillus pseudomycoides DSM 12442] Length = 230 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F + + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDSSIQEMVEKYLTKEGFQITIASDGEEGVLTFLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + I GDL ++L TV+ + ++ LT KE+++++L +N TK N Sbjct: 124 SATEQKEETIEIGDLKIDLINFTVQKKEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYNL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIEDDPSNPEYIKTLWGIGYKL 227 >gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 232 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDDK + +S+ L+L E + V V G + + K + D ++LD+ L + G+E Sbjct: 3 KILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R KIS P+ +L+ DKV GL+ GADDYI+KPF +EL+ARI A++RR + Sbjct: 63 VCKEIR--KISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 IV ++L +TV+V+G ++L+ +E+++++LL T++M + H+ Sbjct: 121 SDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +DV+I LR+K+ + YI TV GY +E Sbjct: 181 WGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQE 225 >gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 233 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 129/222 (58%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DDK L + ++L L+ E F+V + G+ G E + Y ++ +ILD+ L ++ G+E Sbjct: 5 QVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWE 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V +R + P+ +L+ +DK+ GL+ GADDY+ KPF+ ELVAR+RA++RR Sbjct: 65 VCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRD 124 Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ GDL+V+ + V V+ + + L KE++++ LL T+E L Sbjct: 125 QDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +D + ++RKKL +G + I+TVWG GY Sbjct: 185 IWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGY 226 >gi|168206898|ref|ZP_02632903.1| DNA-binding response regulator KdpE [Clostridium perfringens E str. JGS1987] gi|170661686|gb|EDT14369.1| DNA-binding response regulator KdpE [Clostridium perfringens E str. JGS1987] Length = 237 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 128/231 (55%), Gaps = 7/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+KA+ + + L+ ++ + G G+ L D IILDLGL D+ G E+ Sbjct: 5 ILVIEDEKAIRNFVTATLEINSYKCHTAFNGSQGMILAISKRPDIIILDLGLPDMDGIEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 ++ +R + P+ ++S S DK+ L GADDY++KPF+ +EL+ARIR +R+ Sbjct: 65 IKKVREWS-NCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIRKMNYD 123 Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + Q + V GDL ++ + V + IHLT EY+++ LLS LT L Sbjct: 124 RNNTQEIQEFVNGDLKIDYTSGCVFLDEEEIHLTPIEYKLLCLLSKNVGRVLTHNYILKE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKD 227 ++ E ++ + VF+ LRKKLS A NYI+T G GY +LR KD Sbjct: 184 IWSSTCESDIPSLRVFMATLRKKLSKKAMDTNYIQTHIGVGYRLLRIQDKD 234 >gi|313835331|gb|EFS73045.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL037PA2] gi|314928282|gb|EFS92113.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL044PA1] gi|314969982|gb|EFT14080.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL037PA3] gi|328905911|gb|EGG25687.1| two-component response regulator, KdpE [Propionibacterium sp. P08] Length = 227 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ +DD + ++ + L + + + + GE +E+ ++ D ++LDLG+ + G Sbjct: 1 MRILIADDDPQILRALRITLGARGYEILLARDGEHALEMAVDHKPDVLLLDLGMPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V+ A+R P+ ++SG S +KV L +GADDY++KPF+ +EL+ARIR + RR Sbjct: 61 QVIEAVR-GWSQAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLTRRIS 119 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R A+ +I G + V+L + TV G + LT E++++ELL + +T++ LN Sbjct: 120 HDRSGAEPVIAFGTVRVDLTSHTVTRDGANVRLTPTEWRVLELLIHNEGRLVTRQTLLNQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + ++I +LRKKL Y+ T G GY L Sbjct: 180 VWGSEHVTDTGYLRLYISQLRKKLEPEPSNPRYLITDAGMGYRL 223 >gi|255527239|ref|ZP_05394121.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188327|ref|ZP_06856719.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509063|gb|EET85421.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047453|gb|EFG86895.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 226 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 130/227 (57%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+D+K++ + I++ LK E + + V+ G +GIE K + D +ILD+ L DI G Sbjct: 1 MKILVIDDEKSILNLIKMNLKLEGYEIIVSMNGIEGIEKFKKEKPDLVILDIMLPDISGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 EV++ + PV +++ S I DK+ GLQ GADDYI+KPFN EL+ RI+AI + Sbjct: 61 EVIQKFQEVNNDIPVIMVTAKSQINDKLLGLQLGADDYITKPFNSTELILRIKAITKRIT 120 Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R H + I G + V + + V V G +++T KE+ + L+ N T++ Sbjct: 121 KKDREEVHKNNEINLGAIKVLKNERKVLVDGKEVNMTYKEFNTLLLMIENHNKVFTRDEL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ E + +D+ I +LRKKLS + ++T++G GY L Sbjct: 181 LEKVWGYEYEGNSRAVDILIQRLRKKLSPYSQS---VKTIYGVGYKL 224 >gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 236 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 13/228 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A I L L E + + GE+ + + + ++LDL L + G++ Sbjct: 6 RILIVDDDSNIAELISLYLLKECYETEIVGDGEEALRVFPEFRPHLVLLDLMLPGMDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R A P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREMRSAS-QVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQT 124 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 H + DL VNL +V GH I + KE +++ L+ N T+ Sbjct: 125 SPVPAALHTDHQGEYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L+H++ + + +DV I +LR+K+ + AG + TVWG GY Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHAGWA--LTTVWGIGY 230 >gi|91785110|ref|YP_560316.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689064|gb|ABE32264.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 266 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 7 MRILIAEDDSILADGLVRSLRQSAYAVDHVKTGVEADTALSMQTFDLLILDLGLPRMSGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 67 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + V I L+ +E ++E+L R ++KE ++HL + Sbjct: 127 GGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +E I+V++ +LRKK+ + I TV G GY L + A + Sbjct: 187 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEKAAAPASA 233 >gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC BAA-613] gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC BAA-613] Length = 236 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 13/228 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A I L L E + + GE+ +++ ++ + ++LDL L I G++ Sbjct: 6 RILIVDDDANIAELISLYLMKECYETMIVGDGEEALKVFPEFKPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A PV +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCRELR-ASSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + DL VNL +V GH + + KE +++ L+ N T+ Sbjct: 125 APAPAPSSTEQQGEYVEYPDLIVNLTNYSVIYMGHSVEMPPKELELLYFLAASPNQVFTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L+H++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHNSWA--ITTVWGIGY 230 >gi|325916695|ref|ZP_08178954.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325537095|gb|EGD08832.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 233 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA +I ++ V G + ++ FD ++LD+GL + G Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R STPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++RR+R Sbjct: 61 RVLAGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G + A TV + G I L +EY+++E+L R + K+ N L+ Sbjct: 121 GQASEVVQIGGFVFDNAAHTVTLDGTPIELPNREYRLLEILIGRLGHVVGKDEIGNGLFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ I++++ +LR+KL++A I TV G GY L E Sbjct: 181 FDDDAGPNAIELYVGRLRRKLASA---PLRIVTVRGAGYKLEE 220 >gi|115352751|ref|YP_774590.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282739|gb|ABI88256.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 282 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL + G Sbjct: 41 MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 100 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 101 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 160 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + H + L+ +E ++E+L R ++KE ++HL + Sbjct: 161 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 220 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 221 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 258 >gi|332298252|ref|YP_004440174.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332181355|gb|AEE17043.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 244 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 28/246 (11%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+K L+ ++ +L ++V G+ + +DA+ILD+ + + G Sbjct: 1 MRLLLAEDEKRLSCALCEILSKHTYDVDAVYDGKSALAYIASGVYDAVILDIMMPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR AK + PV +L+ I DKV GL GADDY++KPF+ +EL+ARIRA+ RR Sbjct: 61 SVLRELRAAKNNVPVLLLTAKDEIADKVSGLDHGADDYMTKPFSTDELLARIRALTRRRG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-------------------------QGHRIHLTGKEY 155 + GDL+ LD KT E+ G +I L+ KEY Sbjct: 121 EVITGCLEYGDLA--LDPKTCELCTDARRSGIDARRSGIDARDDCQIPSGGKIKLSLKEY 178 Query: 156 QMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVW 215 +++E+L N LTKE L ++ G + E ++VFI LRKK+ G K I+T Sbjct: 179 RIMEMLVQNPNQILTKERILEKVWGGDSDAEYNNLEVFISFLRKKM-RFIGSKAEIKTSR 237 Query: 216 GRGYVL 221 G GY L Sbjct: 238 GIGYSL 243 >gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 231 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 132/229 (57%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K +A IEL LK E ++VYV G++G++ + D I+LD+ L I G E Sbjct: 5 KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGINGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +++ I D+V GL SGADDY++KPF EEL+ARIRA +R+S+ Sbjct: 65 ICRKIRQHS-NVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ DL+++ + V+ I LT +EY ++E L K LT++ L +++ Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++DV+I LR K+ + K I TV G GY E ++ Sbjct: 184 GYSYMGDTNVVDVYIRYLRSKVDDGFKTK-LIHTVRGVGYKCEERENED 231 >gi|308375329|ref|ZP_07443555.2| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu007] gi|308346707|gb|EFP35558.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis SUMu007] Length = 254 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V V G++ I D ++LD+ L D+ G Sbjct: 29 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 88 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR +R + + TP L+ S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS Sbjct: 89 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS- 147 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H A + GDL+++ ++ V G I L+ E++++ L L++ L+ Sbjct: 148 SHLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILD 207 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ I+D++I LRKK+ + + I TV G GY+LR Sbjct: 208 RVWNYDFAGRTSIVDLYISYLRKKIDSDR--EPMIHTVRGIGYMLR 251 >gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621] gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621] Length = 228 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + ++L + EFD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R + + P+ +LS S DK++GL SGADDY++KPFN EL+AR+++ +RR Sbjct: 64 ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S H +S++ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 123 YNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226 >gi|226324180|ref|ZP_03799698.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758] gi|225207729|gb|EEG90083.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758] Length = 229 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++++A + L+ F V V + G+ G++ F +FD +ILDL L + GFE Sbjct: 3 KILIVEDEESIADLEKDYLELSGFEVEVANDGQTGLDKALFGDFDLVILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRKVRAEK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V V G + T KE+ ++ L+ N TK+ Sbjct: 122 LIGSAVEENKVIEIRGLKIDTTARRVWVNGVEKNFTTKEFDLLTFLASHPNHVYTKDELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRFK 228 >gi|62182741|ref|YP_219158.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130374|gb|AAX68077.1| response regulator in two-component regulatory system with BasS (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322717242|gb|EFZ08813.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 222 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGFSTVRAAEHSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV G GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216 >gi|257092042|ref|YP_003165683.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044566|gb|ACV33754.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 226 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD+ +A + L+ + + G D +D +ILDLGL +PG Sbjct: 1 MRILLAEDDRIIADGLCRSLRQAGYAIDCAYNGLDADTALMTNTYDLVILDLGLPKLPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR STP+ IL+ + +D+V+GL GADDY++KPF EL AR+RA+ RRS Sbjct: 61 DVLRRLRARNSSTPILILTALDGTDDRVKGLDLGADDYMAKPFELAELEARVRALSRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ +I G L+ + + V G + L+ +E ++E+L LR ++K+ ++HL Sbjct: 121 GTSR-MIQCGSLTFDQTDRCALVNGEMLDLSARELGLLEILLLRAKRLVSKDQLVDHLCG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +E I+V++ +LRKKL A G N I TV G GY L + A++ Sbjct: 180 WGEEVSHNAIEVYVHRLRKKLE--ATGVNII-TVRGLGYYLEKPAEE 223 >gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM 14600] gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM 14600] Length = 229 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V G++ ++ + ++D I+LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDEMKVDCAYDGQEALDKAREGDYDLILLDVMLPRMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR R Sbjct: 64 VCRAVREFS-NVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRVRS 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++I +GD+S++ D +++ + G I+LT KE+ M+ LL +++ L+ Sbjct: 123 REAEEDSGNVIKSGDVSMDTDRRSLRIAGEDINLTSKEFDMLLLLVNHPGKVYSRDSLLH 182 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G D P + + +DV I +LR+K+ + Y+ T WG GY + Sbjct: 183 TIW-GSDYPGDARTVDVHIRRLREKIEPSPSEPRYVHTKWGVGYYFQ 228 >gi|257140136|ref|ZP_05588398.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 257 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL +PG Sbjct: 11 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 71 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 131 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 191 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCL 228 >gi|158319827|ref|YP_001512334.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140026|gb|ABW18338.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 226 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M++L+IED+ L ++++ + + V Y D GE G+EL E+D IILDL L + G Sbjct: 1 MKLLIIEDETDLVNALKKGFVKKGYAVDYAVD-GEVGLELYHINEYDLIILDLNLPSMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL +R V ILS S++ D++RGL GA+DY+ KPF+ EL AR+R+++R Sbjct: 60 LEVLETIREKDKMQRVLILSARSTVPDRIRGLDMGANDYLPKPFDFAELDARVRSLLRCE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I ++ ++ AK++ V G L +EY + E L + + T ++ E + H++ Sbjct: 120 LIQHNTSIQYDNIILDTRAKSILVNGVIFPLAPREYAIFEYLLIHRGTVISAETLIEHIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +I V I +RKKL A+ GK YI TV G+GY++ Sbjct: 180 DSEVNMFTDVIKVHISNIRKKLREAS-GKEYIVTVRGKGYLI 220 >gi|120401218|ref|YP_951047.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954036|gb|ABM11041.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 244 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + S+ L+ F+V V G++ + L DA++LD+ + ++ G V Sbjct: 21 VLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAV 80 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + ALR P+C+LS ++ D++ GL++GADDY++KPF+ ELVAR+ A++RR+ Sbjct: 81 VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 140 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+++ + V V G R+ LT +E+ ++ L+ L+++ L ++ Sbjct: 141 DPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVWG 200 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + DVF+ LR+KL G I TV G GYVLR Sbjct: 201 YDFDVDTNVADVFVSYLRRKLER-EGLPRVIHTVRGIGYVLR 241 >gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 294 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 1/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD A+ ++ L E F V GE+ + + + D +ILD+ + + G E Sbjct: 73 RILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQPPDLVILDIMMPGMDGLE 132 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR A PV L+ + D+V+GL++GADDY+ KPF E LVAR+RA++RR + Sbjct: 133 VLQRLRAADPELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRRHQA 192 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ DL ++ T IHLT E++++ L L K+ L ++ Sbjct: 193 ERPQVLRFADLVLDTGTYTARRGQREIHLTALEFKLLPEFMLHPRQVLNKDQLLERVWGY 252 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++V++ +LR+KL A G I TV G GYVLRE Sbjct: 253 DFGGNANVLEVYVKQLRQKL-EAEGEPRLIHTVRGVGYVLREG 294 >gi|262403145|ref|ZP_06079705.1| DNA-binding response regulator [Vibrio sp. RC586] gi|262350644|gb|EEY99777.1| DNA-binding response regulator [Vibrio sp. RC586] Length = 218 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S++ L + + V + G + K +F A+ILDL L D+ G Sbjct: 1 MRLLLVEDDTLLGESMQEALSRQGYTVDWLERGGGVVSALKTEQFTALILDLTLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A S PV IL+ I D+V+GL GAD+YI KPF EEL+AR+R I+RRS Sbjct: 61 EVLRQIRRAGYSLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A++LI G+L+++L + + + LT EY+++ L + ++KE+ L+ Sbjct: 121 GSAEALISAGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKKL + N I V G GY++ Sbjct: 181 WDEGSSDNAIEVHIHNLRKKLPD-----NLIRNVRGVGYMI 216 >gi|326201281|ref|ZP_08191153.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988849|gb|EGD49673.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 226 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 127/227 (55%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED K + + +L E F V+ G DG + K ++D I+LD+ L G E Sbjct: 3 KILVIEDSKDVNSMLSEILTEEGFEVFSAYTGTDGFKEIKENQYDLILLDIMLPYKSGDE 62 Query: 62 VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R K S PV ++S +I K+ L+ GADDY++KPF+ E+VAR+ A +RRSR Sbjct: 63 ILKEVR--KFSDVPVIVISAKDTIGLKIDLLKMGADDYVTKPFDLGEVVARVSANLRRSR 120 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 AQS ++ D++V++D+K + V G + LT KEY ++ELL ++ TK E Sbjct: 121 IKAQSEKILHYKDVAVDIDSKRIIVNGKELDLTAKEYGIMELLIKNRDKVFTKANLYETI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y G D + + LR KL A + YIETVWG GY L Sbjct: 181 WQEAYLGDDNA----VKTHMSNLRSKLKTANAQQEYIETVWGLGYRL 223 >gi|83719681|ref|YP_441198.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83653506|gb|ABC37569.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 291 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL +PG Sbjct: 45 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 104 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 105 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 164 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 165 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 224 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 225 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCL 262 >gi|330504485|ref|YP_004381354.1| DNA-binding response regulator [Pseudomonas mendocina NK-01] gi|328918771|gb|AEB59602.1| DNA-binding response regulator [Pseudomonas mendocina NK-01] Length = 218 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+AL I LK E + V G + F+ ILDLGL + G Sbjct: 1 MRILLVEDDQALGEGIRTALKPEGYTVDWLQDGASALHALSHESFELAILDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ L+ A PV +L+ + D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 QVLKHLQAAANPVPVLVLTARDATSDRIAGLDAGADDYLIKPFDVAELKARLRALLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + + ++ ++ VE QG I+L KE+ ++ L ++ LT++ LY Sbjct: 121 QRPQPALEYRGIRLDPASQVVEYQGQTINLPRKEFLLLHELLIQPGRVLTRDKLQQALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E E ++V + LRKK I TV G GY++ Sbjct: 181 WDEEVESNALEVHVHHLRKKFF-----PELIRTVRGVGYLV 216 >gi|295695240|ref|YP_003588478.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295410842|gb|ADG05334.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 236 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 2/231 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI++++D+ + + + L++ + + GEDG+ + D +ILDLGL D+ G + Sbjct: 6 RIVIVDDEPQIRKFLRVSLRAHGYETLEAETGEDGLRQVTAGKPDLVILDLGLPDMRGAD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLRA+R S PV ILS E+K+R L +GADDYI+KPF EL+ARIR +R S + Sbjct: 66 VLRAIREWS-SVPVIILSVQEQEEEKIRALDAGADDYITKPFGMGELLARIRVALRHSAK 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I G L ++L + V V G + LT EY++++ L+ +T L ++ Sbjct: 125 ASGDPVIKLGTLRIDLGTREVTVGGQAVKLTPTEYELLKALASHPGRVMTHRQLLKAVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 E ++ + V+I +LR+K+ +I T G GY LR ++ + E Sbjct: 185 SGYEQDIHSLRVYIGQLRRKIEEDPARPRWIVTEPGVGYRLRLPHEETSVE 235 >gi|116690673|ref|YP_836296.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170734017|ref|YP_001765964.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|116648762|gb|ABK09403.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169817259|gb|ACA91842.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 242 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + H + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 218 >gi|75908656|ref|YP_322952.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702381|gb|ABA22057.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 222 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A IE L+S+ F V + FD +ILDLGL G + Sbjct: 3 RILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKDGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR + PV IL+ I+DKV G ++GADDY++KPF EEL+ R++A +R+S G Sbjct: 63 VLEELRGQGENVPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSGG 122 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I +G + ++L ++ V++ I L +E+ + E L++E L+ + Sbjct: 123 SQVMEEMVIKSGHIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P I+DV++ LRKKL N + IETV G GY LR Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGN-----DLIETVRGMGYRLR 221 >gi|78049624|ref|YP_365799.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927313|ref|ZP_08188567.1| two component transcriptional regulator, winged helix family [Xanthomonas perforans 91-118] gi|78038054|emb|CAJ25799.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542314|gb|EGD13802.1| two component transcriptional regulator, winged helix family [Xanthomonas perforans 91-118] Length = 221 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD LA +I ++ +++ + + + + A++LD+GL G Sbjct: 1 MHLLLVEDDTMLASAICEGVRQQSWTIDHVGHANAAKTVLVDHRYSAVLLDIGLPGESGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R +R +TPV L+ + D++RGL +GADDY+ KPF +EL+AR+RA+ RRS+ Sbjct: 61 SVIRFMRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAVTRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L+ GD+ ++ ++ V G + L+ EY+++ L R +TK+ +Y Sbjct: 121 GRVVPLLSHGDVCMDPGSRKVTKDGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E +I V++ +LR+KL +A I TV+G+GY++ Sbjct: 181 GPSEGGSNMIAVYVHQLRRKLGDA-----LISTVYGQGYMV 216 >gi|237808666|ref|YP_002893106.1| DNA-binding transcriptional regulator BasR [Tolumonas auensis DSM 9187] gi|237500927|gb|ACQ93520.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 220 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 10/223 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58 M+ILLIEDD L + ++ L+ + Y D+ E ++ ++D IILDLGL D Sbjct: 1 MKILLIEDDALLLNGLQKALEQQQ---YCCDIARSLSEARRYTLDDYDLIILDLGLPDGD 57 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +L+ R S PV IL+ S++D+V+GL GADDY+ KPF EL AR+RA++RR Sbjct: 58 GLTLLKQWRQQGCSQPVLILTARDSLDDRVKGLDQGADDYLIKPFALAELQARVRALMRR 117 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ + +G L ++++ V + + LT EY ++ L L T+ +E L Sbjct: 118 RFEKAENALQSGALKLDMNLNQVWLHEQELTLTRMEYAILRRLMLHAGKTVQRERLQQDL 177 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 YD DE ++V+I LR+KL G + I T+ G GY L Sbjct: 178 YDWNDEIGSNTLEVYIHHLRRKL-----GSDSIRTIRGEGYRL 215 >gi|167621347|ref|ZP_02389978.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] Length = 236 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL +PG Sbjct: 4 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 64 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCL 221 >gi|284034649|ref|YP_003384580.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283813942|gb|ADB35781.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 225 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 124/220 (56%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++++ LK+ + V+V G +++ + D +ILDLGL D+ G E Sbjct: 3 RVLVVDDEPQIVRALQINLKARRYEVHVAGTGTAALQVAAQHPPDLVILDLGLPDLDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR P+ +LSG + DKV L +GADDY++KPF +EL+AR+RA +RRS G Sbjct: 63 VIRGLR-GWTEAPILVLSGRTDSTDKVEALDAGADDYVTKPFGIDELLARMRAALRRSSG 121 Query: 122 HAQSLIVT-GDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +VT G+ V+L AK V + G + LT E+ ++E+L +++ L ++ Sbjct: 122 GTEQPVVTVGEAKVDLAAKRVTLGNGEDVRLTPTEWHLLEVLVRHPGKLMSQRQLLLEVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + ++ +LR+KL ++ T G GY Sbjct: 182 GPGYETAGGNLRFYMAQLRRKLEPDPARPQHLRTEPGMGY 221 >gi|170781102|ref|YP_001709434.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155670|emb|CAQ00790.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 226 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 127/221 (57%), Gaps = 7/221 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEF--DAIILDLGLTDIP 58 RIL+++DD ALA I ++L++E F + D G+ L F+E D ++LDL L + Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGFEPSFCADGGQ---ALAAFHEAKPDLVLLDLMLPGLD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V +R A+ P+ +L+ S D V+GL+SGADDYI KPFN +ELVARIR +R Sbjct: 61 GIQVCDLIR-AESGIPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRP 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + L+ GDL V+++ V RI+LT E+ ++ L+ R T+EM L + Sbjct: 120 AAAASPGLLQVGDLVVDVEGHEVRRGEDRINLTPLEFDLLHALASRPQQVFTREMLLEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + + ++++V + +LR K+ + + TV G GY Sbjct: 180 WGYQYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGY 220 >gi|170738424|ref|YP_001767079.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168192698|gb|ACA14645.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 225 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 123/219 (56%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED + L +I L++ V G DG + +D +ILD+ L + GF Sbjct: 1 MRILLVEDTRDLGEAIATRLRALGHAVDWERDGADGDAALQVQAYDLVILDVNLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + +PV +L+ S ++D+V L GADDY+ KPF+ EL AR+RA++RR Sbjct: 61 SVLRRLRARRGRSPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + I G+L ++ A++ V G + LT +E+ ++E+L+ R K L + Sbjct: 121 GHADNAIAVGNLVLDRAARSARVAGQPLDLTRREWTLMEILAARPGRIFGKAELLERVTS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + +LR+KL+ AG + I T+ G GY Sbjct: 181 FEEDASENAVEQIVARLRRKLAQ-AGAEPEIRTLRGLGY 218 >gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 228 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 119/221 (53%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ LA +EL L SE + V V G G+ L + D +LD L + G E+ Sbjct: 5 ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLSGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR S PV +L+ + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++ Sbjct: 65 CRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQET 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + L+ DLS+N + V I LT KE+ ++E L T++ L ++ Sbjct: 125 DEDLLQFEDLSLNRRTREVFRGNRAIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWGYD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR KL K I TV G GY LRE Sbjct: 185 FMGDSNIIEVYIRYLRLKLEE-HNEKRLIHTVRGVGYALRE 224 >gi|317404641|gb|EFV85039.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 220 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA + L+ + V G D + + +D ++LDLGL + G Sbjct: 1 MRILVVEDEPTLAAQLAEALRLAGYTVDAAADGADAHYMGEVETYDVVVLDLGLPVMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A PV IL+ S+ +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 TVLKQWRAAGRGMPVLILTARSNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRHS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G L ++ V G ++LT E++++ +L +++ + H+Y Sbjct: 121 NHASAQWRCGPLMLDTRLARATVDGQPLNLTSHEFKVLAVLMQHAGEVVSRGDLIEHIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDVFI +LRKKL + IETV G GY L Sbjct: 181 QDHDRDSNTIDVFIGRLRKKLP-----ADTIETVRGLGYRL 216 >gi|312135286|ref|YP_004002624.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311775337|gb|ADQ04824.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 232 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 133/229 (58%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G+E+ Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNSKVDLVILDIMMSDKDGYEI 63 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 L+ +R + + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++RR Sbjct: 64 LKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + GD+ V+ +TV+ + L+ KE+++++LL K L ++ L Sbjct: 124 SLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFILQR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|182680347|ref|YP_001834493.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636230|gb|ACB97004.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 277 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ +A I L ++V + + G G+ + +I+D L + G + Sbjct: 57 ILLVEDEADMASEIAAELTKLGYHVQIEETGPAGLAAARSQAMSLLIIDRMLPETDGLTL 116 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR I TPV ++S + S+++K+RGL++G DDY++KPF EL AR+ A++RR Sbjct: 117 IETLRQEGILTPVLVVSALGSVDEKIRGLKAGGDDYLTKPFAMGELAARVEALLRRPAAE 176 Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+S I+ G L ++L +TV + L +E++++E L R T+T+ M L +++ Sbjct: 177 ARSAILRVGSLEMDLIERTVRRNERLLDLLPREFKLLEYLMRRPGQTVTRAMLLEDVWNY 236 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 P+ ++DV I KLRKK+ + G IE+V G G+ L Sbjct: 237 NFLPQTNLVDVHIGKLRKKI-DQPGEVQMIESVRGAGFRL 275 >gi|15840463|ref|NP_335500.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis CDC1551] gi|254231325|ref|ZP_04924652.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis C] gi|13880635|gb|AAK45314.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis CDC1551] gi|124600384|gb|EAY59394.1| two component transcriptional regulator trcR [Mycobacterium tuberculosis C] Length = 276 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V V G++ I D ++LD+ L D+ G Sbjct: 51 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 110 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR +R + + TP L+ S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS Sbjct: 111 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 170 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + GDL+++ ++ V G I L+ E++++ L L++ L+ Sbjct: 171 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 230 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ I+D++I LRKK+ + + I TV G GY+LR Sbjct: 231 VWNYDFAGRTSIVDLYISYLRKKIDSDR--EPMIHTVRGIGYMLR 273 >gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 229 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L E F V + G + + +D I+LDL L + GF Sbjct: 1 MRVLVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQASEIAYDVIVLDLMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A PV +LS S + D+VRGL GADDY++KPF+ +EL ARIRA++RR Sbjct: 61 EVCRRLRAAGRWAPVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRRG- 119 Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +++ D L ++ +T G + L+ KE+ ++E L L++ L H++ Sbjct: 120 THERPVVLDVDGLRLDPAGRTASRDGTALDLSPKEFALLEYLMRHPGEVLSRTAILEHVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + ++D +I LR+K+ G + +ETV G GY L Sbjct: 180 DFAYDGTSNVVDQYIAYLRRKIDRPF-GISQLETVRGAGYRL 220 >gi|161525507|ref|YP_001580519.1| two component heavy metal response transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189349765|ref|YP_001945393.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] gi|160342936|gb|ABX16022.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189333787|dbj|BAG42857.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] Length = 227 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ A + L F V + G DG +D +ILD+ L D+ G+ Sbjct: 1 MKLLVIEDENKTADYVRQGLMEAGFVVDLARNGLDGHHQAMSETYDLVILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 ++++LR A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR S Sbjct: 61 RIVQSLREAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I DL ++L + G RI+LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 APNHPDRIQIADLLLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ +A K I TV G GY L Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDAFDPK-LIHTVRGMGYTL 221 >gi|50118973|ref|YP_048140.1| two-component system response regulator [Pectobacterium atrosepticum SCRI1043] gi|49609499|emb|CAG72932.1| two-component system response regulator [Pectobacterium atrosepticum SCRI1043] Length = 220 Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ + ++ L FN+ G+ G K +DA++LDL L + G Sbjct: 1 MRVLLIEDDRLIGDGLKAGLNKLGFNIDWFTEGKAGATALKAAPYDAVVLDLSLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R A PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q ++ G +S+ +++V + + L +E ++EL L N LT+ LY Sbjct: 121 GQLQPVLTHGAVSLEPSSRSVTLNSEPLILKSRELALLELFLLNPNRVLTRAQLEEKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LRKKL G +I TV G GY+L Sbjct: 181 WDDDVSSNAVEVHIHHLRKKL-----GSGFIRTVHGVGYIL 216 >gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 226 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 130/223 (58%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 + L+++D+K + I+ L+ ++ V G++ ++ + E+D I+LD+ L + GFE Sbjct: 4 KALVVDDEKVIVKGIKFSLEQDDIIVDCAYDGQEALDKARANEYDIILLDVMLPIMTGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIREFS-NVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRASK 122 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +A S +I GDL +N + + V V I++T +EY+++ELL+ ++E L ++ Sbjct: 123 NADSKDVISYGDLKLNEEYRRVFVGSKEINVTSREYELLELLASNPGKVYSREELLTTIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +V+ +DV I +LR+KL + Y+ T WG GY + Sbjct: 183 GTEYPGDVRTVDVHIRRLREKLESNPSEPRYVRTKWGSGYYFQ 225 >gi|197106149|ref|YP_002131526.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] gi|196479569|gb|ACG79097.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] Length = 223 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD A + L + GE+G++ + EFD +I+D + + G Sbjct: 1 MRILIVEDDLEAAGVMVRGLTEAGHDCVSAADGEEGLKAARDGEFDVMIVDRMMPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119 ++ LR TPV LS + + D+V GLQ+GADDY+ KP+ EL+ARI A+ RR Sbjct: 61 TLVETLRREGDRTPVLFLSALGEVADRVDGLQAGADDYLVKPYAFPELIARIEALARRRD 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +L+ G+L ++L A+TV G I L +E+Q++E + ++T+ M L ++ Sbjct: 121 TGSVNTLLRVGELEMDLIARTVHRAGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P+ +IDV I +LR K+ + ++TV G GY L Sbjct: 181 HYHFDPQTNVIDVHISRLRSKIDKGF-DRPMLQTVRGAGYRL 221 >gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 225 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A ++ L F V + + G DG+ + + ++D IILD+ L + G+ Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++++R +K TPV L+ + + D+VRG + GADDY+ KPF EL+ARIR +R+S Sbjct: 61 TVIKSIR-SKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL +++ + V RI LT +E+ M+ LL R+ L++ + ++D Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSMLHLLMRRRGEVLSRTTIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV I +LR K+ + K I TV G GYVL Sbjct: 180 VNFDTDTNVVDVAIRRLRSKVDDPFDQK-LIHTVRGMGYVL 219 >gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 226 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD L +E L E + V V + G DG+ L + + D +ILD L + G ++ Sbjct: 5 ILLIEDDPKLLLFVEQELSLEGYQVTVANNGLDGLSLARSIQPDLLILDWMLPTLSGVDI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR + TP+ +L+ I D+V GL SGADDY++KPF+ EEL+AR++A +RR Sbjct: 65 CLRLRSTGVQTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQLRRVNPE 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + D+S++ V R+ LT KE+ ++E L +T++ L ++ Sbjct: 125 EPDRLQFADVSLHRLTHEVYRGSQRLELTAKEFDLLEFLLRHARQVVTRDQILEQVWGYD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E II+V+I LR KL A+ + ++TV G GYV+R+ Sbjct: 185 FMGESNIIEVYIRALRLKLE-ASNPQRILQTVRGVGYVIRD 224 >gi|324006395|gb|EGB75614.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2] Length = 227 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 TVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221 >gi|313900629|ref|ZP_07834122.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312954691|gb|EFR36366.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 230 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DDK + + E L+ N +V+ G G+ + K D I+LD+ L GF+ Sbjct: 3 KILIIDDDKDVLIAAEQYLQKNNEDVFTATGGSKGLRVLKQETIDCIVLDVLLKGESGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R S P+ L+ +SS ED G GADDYI+KPF+ EEL RI+A +R+ Sbjct: 63 LCRKIRSFS-SVPIVFLTNLSSQEDLKNGFLMGADDYITKPFSLEELYLRIQARIRQYYQ 121 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q ++ L +NLDA+T+++Q +R+ LT E+ ++ LL+ T ++ Sbjct: 122 IPSRQKILNFFPLRINLDARTIQIQDNRVPLTMSEFDILVLLAQTPEHVYTISEIYQRVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + V I LRKKL A G +I+TVWG+GY E Sbjct: 182 KMPDMNSTHTVQVHIANLRKKLEEAWGDHMFIQTVWGKGYKFVE 225 >gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 245 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ ALA + + L+ E + V G + + + + DA++LD+ L D+ G Sbjct: 20 VRVLVVDDESALADLLSMALRYEGWEVRTAGNGAEALRITRELRPDAVLLDIMLPDMDGL 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 80 TLLGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSG 139 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A +SL+ GDL ++ D+ V G IHLT E++++ L L+K L+ Sbjct: 140 AAAARSESLLTVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDR 199 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +++++I LR+K+ AG I T G GY+++ Sbjct: 200 VWSYDFGGQANVVELYISYLRRKID--AGRSPMIHTRRGAGYLIKPG 244 >gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +IL+++DDK + + I + L++E T ED IE + E FD IILD+ + ++ Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIEALQLLEEKEFDLIILDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E +R + + P+ +LS S DK++GL SGADDY++KPFN EL+AR+++ +RR Sbjct: 61 GIEACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 119 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S H +S++ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 120 FKKYNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVA 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 180 KIYEAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226 >gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 239 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G LS++ A+ V G RI LT +E+ ++ + ++ Sbjct: 126 LARDSRIDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 LN ++ R E ++ I +LR K+ I TVWGRGY L + +T Sbjct: 185 LNAVWGYRHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKLAAPDQRDT 239 >gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505] gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505] Length = 248 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 130/228 (57%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++ LA + L+ E + V G + + + D I+LD+ L D G Sbjct: 17 LRVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGL 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R + + PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS Sbjct: 77 EVMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S++ GDL ++ D+ V G I LT E++++ L L+K L+ Sbjct: 137 ASEEKPASILEVGDLRMDEDSHEVWRGGDEIQLTATEFELLRYLMRNPRRVLSKPQILDR 196 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ + I++++I LR+K+ G + I T+ G GYVL+ A Sbjct: 197 VWNYDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVLKPAA 242 >gi|295703773|ref|YP_003596848.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801432|gb|ADF38498.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 239 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 128/228 (56%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++++ L+ E + V+V G+ G+E D ++LD+ L ++ G E Sbjct: 4 RILIVEDEEMIARALQIELEHEGYKVFVEHEGKSGLEAALHNSIDLVLLDVMLPELSGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AI 115 VLR +R PV +L+ + DKV GL GA+DYI+KPF EE++AR+R AI Sbjct: 64 VLRRIRKKNAYLPVILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHGAI 123 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + DLSVNL+ + V + I LT KEY ++ L +N L++E L Sbjct: 124 IQEVTEKKDVHLSIEDLSVNLETREVIRKNKTIILTPKEYDLLVYLLKNQNIVLSRENIL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E E ++DV+I LRKK+ I TV G GYV+R+ Sbjct: 184 LTVWGYDYEGETNVVDVYIGHLRKKIEEEINSP-LIRTVRGVGYVIRK 230 >gi|260769434|ref|ZP_05878367.1| two-component system response regulator QseB [Vibrio furnissii CIP 102972] gi|260614772|gb|EEX39958.1| two-component system response regulator QseB [Vibrio furnissii CIP 102972] gi|315181964|gb|ADT88877.1| DNA-binding response regulator [Vibrio furnissii NCTC 11218] Length = 218 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 8/206 (3%) Query: 19 MLKSENFNVYVTDLGE--DGIE-LCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75 M+ S + + Y D E G+E + K +F A+ILDL L DI G VLR +R A + P+ Sbjct: 16 MVTSLSRHGYTVDWVERGSGVETVLKTEQFMAVILDLTLPDIDGLMVLRHIRRAGFTLPI 75 Query: 76 CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVN 135 IL+ I+D+V+GL GADDY+ KPF EEL+AR+R ++RR G+ + I G+LS++ Sbjct: 76 LILTARDDIDDRVKGLDGGADDYLIKPFALEELMARLRVLIRRQSGYCDTRIDVGELSLS 135 Query: 136 LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFIC 195 L ++V+ QG+R+ LT E++++ L L+KE L+ + I+V I Sbjct: 136 LSEQSVDFQGNRLKLTNNEFKLLASLMTHAGRVLSKEQLQQSLHGWDEGASDNAIEVHIH 195 Query: 196 KLRKKLSNAAGGKNYIETVWGRGYVL 221 LRKK+SN + I+ + G GY++ Sbjct: 196 NLRKKVSN-----HVIKNIRGVGYII 216 >gi|289555184|ref|ZP_06444394.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 605] gi|289439816|gb|EFD22309.1| two component system transcriptional regulator trcR [Mycobacterium tuberculosis KZN 605] Length = 263 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V V G++ I D ++LD+ L D+ G Sbjct: 38 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 97 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR +R + + TP L+ S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS Sbjct: 98 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS- 156 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H A + GDL+++ ++ V G I L+ E++++ L L++ L+ Sbjct: 157 SHLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILD 216 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ I+D++I LRKK+ + + I TV G GY+LR Sbjct: 217 RVWNYDFAGRTSIVDLYISYLRKKIDSDR--EPMIHTVRGIGYMLR 260 >gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 235 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G E Sbjct: 4 QILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR I TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++AI+RR+ Sbjct: 64 VCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRRTSK 123 Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q V G L+V D V H + LT KE++++ L N TLT+E Sbjct: 124 EQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR K+ + +I+T+ G GY +E Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKE 234 >gi|218246382|ref|YP_002371753.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218166860|gb|ACK65597.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 237 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 124/231 (53%), Gaps = 14/231 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 MR+LL ED+ L I+ ML EN Y+ D +DG + E + I D L Sbjct: 1 MRLLLAEDEPDLGAIIQRMLNREN---YLVDWVQDGATAWNYLEQEWIEYSVAIFDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 I G E+ + LR S PV +L+ S I+D V GL +GADDY+SKPF K EL+ARIRA+ Sbjct: 58 KISGLELCQKLRQQGYSLPVLMLTAKSDIQDMVTGLDAGADDYLSKPFIKAELLARIRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTV-----EVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RR+ + + G L+++ +V + Q I LT E++++E N TLT Sbjct: 118 QRRALHIQPNQLQIGLLTLDYAKSSVFTPNAQGQPQNIPLTANEFRLLEYFMKHPNQTLT 177 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ L L++ D P ++ I LR+KL++ G K+ IETV G GY L Sbjct: 178 RDQLLAQLWETDDAPISNVVSARIRLLRRKLAD-YGCKDLIETVHGFGYRL 227 >gi|170078061|ref|YP_001734699.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169885730|gb|ACA99443.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 222 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ +A +E KSE F V + ++ ++ Y F +ILDLGL D G E Sbjct: 3 QILIIEDEPRIASFLEKGFKSEGFTVTIASTAKEALDWALQYPFALLILDLGLPDADGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RS 119 VL LR ++ P+ IL+ ++DKV GL GADDY+ KPF+ +EL+AR++A +R Sbjct: 63 VLHDLRGQGVTAPIIILTARDDLDDKVTGLNLGADDYLGKPFSFKELLARVQARLRTFTP 122 Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + + + T L ++L A+ V + L +E+ ++E L + L+++ L+ + Sbjct: 123 RATPEPMCLKTQTLELDLKARRVRQGDVWLELPTREFILLETLLRHPDQVLSRQQLLDQV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P I+DV+I LRKKL G + IETV G GY L+ Sbjct: 183 WGYDYDPGSNIVDVYIGYLRKKL-----GSDLIETVRGIGYRLK 221 >gi|288939789|ref|YP_003442029.1| winged helix family two component transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895161|gb|ADC60997.1| two component transcriptional regulator, winged helix family [Allochromatium vinosum DSM 180] Length = 225 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A ++ L + F V G + + + A ILDLGL + G Sbjct: 1 MRLLLVEDDDQVAETVTAGLTAAGFLVERARDGREAWFMGDTEPYAAAILDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A PV ILS ++V G+++GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 SVLRQWRAAGQRLPVLILSARGDWTERVEGIEAGADDYLPKPFRFEELLARVRALIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++V G ++ +T+ G IHL+ +EY+++ L + ++++ LY Sbjct: 121 GQPAPVLVHGSFRLDTRRQTLSRDGLPIHLSPQEYRLVSYLMQQAGRVVSQQELTEQLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ++V + ++R+KL G I+T G GY++ Sbjct: 181 QDFERDSNAVEVLVGRVRRKL-----GAELIQTRRGFGYLI 216 >gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 239 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 129/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ +I TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I G+L + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVSESPDEESIKIGELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKVDE 239 >gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 222 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 133/221 (60%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED++ + ++ L+ NF+ + G GI + K FD ++LD+ L D+ G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLEKNNFDALFAEDGSTGINMFKNNSFDIVLLDVMLPDMSGWN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL+ +R + PV +++ S D++ G + GADDY+ KPF+ E++ARI+AI+ RS+ Sbjct: 63 VLKTIRESS-KIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAILSRSKW 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I ++++ D++ V+V G +I LT KE+ ++ LL+ L++E LN ++ Sbjct: 122 AESDNSISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNIVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ +D I +LR+KL + ++ I+TVWG GY L Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGDK---RDIIKTVWGYGYKL 219 >gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] gi|151281395|gb|ABR89805.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 227 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ A I L+ F V V G DG + +D ++LD+ L D+ G+ Sbjct: 1 MKILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++LR A PV L+ S++D+V+GL+ GAD Y+ KPF EL+A +R ++RR Sbjct: 61 HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 AQS + DL ++L + G RI LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 VPAQSDQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIASQIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + +IDV I +LR K+ K I TV G GY L Sbjct: 181 DMNFDSNTNVIDVAIRRLRAKMDEPYEPK-LIHTVRGMGYTL 221 >gi|124268353|ref|YP_001022357.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261128|gb|ABM96122.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 266 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL EDD ALA S L+S+ + V T GE K +D +ILD+GL I GF Sbjct: 38 MHILLAEDDPALAESTARALRSQGWVVDHTPRGEPVPTSVKTDPYDLLILDIGLIGIDGF 97 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E LR +R + PV +L+ +IED+V GL+ GADDY+ KPF EL+AR++ + RR + Sbjct: 98 ETLRRVREQGSTLPVLMLTARDAIEDRVHGLEMGADDYLVKPFALAELIARVKVLTRRHQ 157 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ G L ++L+A + + L+ +E+ ++E L R + KE L + Sbjct: 158 ARQGSVLSMGGLRMDLEANRAWIGEQPLDLSAREWAVLEYLLSRVGHVVGKEQILQAISG 217 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D ++V++ +LR K+ A I V G GY++ E A Sbjct: 218 WDDALSENAVEVYVSRLRPKIEPAG---LRIRAVRGFGYLVEEVA 259 >gi|146297039|ref|YP_001180810.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410615|gb|ABP67619.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 232 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 133/228 (58%), Gaps = 5/228 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I+ L+ E +N + + G +++ K + D +ILD+ ++D G+EV Sbjct: 4 ILIVDDEPHIVELIKFNLQKEGYNTFEAENGNTALDIIKNNKIDLVILDIMMSDKDGYEV 63 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 L+ +R K + PV +LS S D++ GL+ GADDYI+KPF+ +ELVAR++A+ RR Sbjct: 64 LKEIRFNKGTRNLPVILLSAKSEEIDRILGLELGADDYITKPFSVKELVARVKALFRRIE 123 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + I GD+ V+ ++V+ + I L+ KE+++++LL + L ++ L Sbjct: 124 NLKPEVEEKIRFGDIEVDFTKRSVKKRNQEISLSFKEFELLKLLIENRGRVLDRDFILQR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + + +DV I LR+KL + YIETV G GY RE + Sbjct: 184 VWGYEFDGDSRTVDVHIRFLRRKLEDDEKNPKYIETVRGVGYRFREGS 231 >gi|257867051|ref|ZP_05646704.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873386|ref|ZP_05653039.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257877129|ref|ZP_05656782.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257801107|gb|EEV30037.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807550|gb|EEV36372.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257811295|gb|EEV40115.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 224 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+IEDDK L+ +++ ++ SE +V G +G+ + +D IILDL + ++ G+ Sbjct: 2 IKLLVIEDDKTLSDNMKEIV-SEIGDVTQAYDGSEGLYEAETGIYDLIILDLMMPEMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL ALR + TPV IL+ +EDKV G Q GADDY++KPF +EEL+ RI+A+++RS Sbjct: 61 EVLSALRKKGLQTPVLILTAKDGLEDKVTGFQKGADDYLTKPFYREELLMRIKALLKRSL 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ + L NL V QG + + GKE++++ +N LTKE + ++ Sbjct: 121 GLFNENTLEYNGLLCNLGTNEVSYQGQLLPIQGKEFELLLYFLQNRNIILTKEQIFDRIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + +++V++ LRK L K I T+ GY+++ Sbjct: 181 GFDSETTLTVVEVYMSNLRKHLRQTGIDKE-IRTLRNVGYIMQ 222 >gi|226310545|ref|YP_002770439.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093493|dbj|BAH41935.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 251 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIED+ +A IEL L E+F + V G G++L E+D I+LD+ L + G Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K TP+ +L+ SI D+V GL SGADDYI KPF EEL+ARIR + RR Sbjct: 89 VCQKIRSVK-KTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEE 147 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++++ L V ++ + V + LT +EY ++ N L +++ L+ + Sbjct: 148 QENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTV 207 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E ++DV++ LR K+ + +YI TV G GYV+R+ Sbjct: 208 WGFEAAVETNVVDVYVRYLRNKI-DFPNEDSYISTVRGIGYVMRK 251 >gi|107023589|ref|YP_621916.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|105893778|gb|ABF76943.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] Length = 282 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL + G Sbjct: 41 MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 100 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 101 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 160 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + H + L+ +E ++E+L R ++KE ++HL + Sbjct: 161 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 220 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 221 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 258 >gi|50843487|ref|YP_056714.1| putative two-component system response regulator [Propionibacterium acnes KPA171202] gi|50841089|gb|AAT83756.1| putative two-component system response regulator [Propionibacterium acnes KPA171202] gi|315107835|gb|EFT79811.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 243 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED+ +L + + ++ E ++V + G + + D I+LD+ L+D G Sbjct: 18 IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV+R +R+ + + L+ + ++ GL +G DDY++KPF+ EE++AR+RA++RRS Sbjct: 78 EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSG 137 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S++ GDL+++ +++ V G IHLT E++++ L+K L+ Sbjct: 138 ATEPKPDSMLTVGDLTLDENSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ G K I T+ G GYVL+ Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHKPMIHTMRGAGYVLK 240 >gi|227820289|ref|YP_002824260.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227339288|gb|ACP23507.1| probable two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 225 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ALA + +L+ + V V + G + FD +ILDL L ++ G Sbjct: 1 MRILLVEDNQALAEGLSTLLRDSGYAVDVVNDGASAHAVAAAESFDLVILDLNLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R + V IL+ S E++V+GL GADDY+ KPF+ E AR+R ++RR Sbjct: 61 DVLRAMRARQNRAAVLILTARGSPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S++ G++S++L A++ G I + +E ++ELL +R + K+ + L Sbjct: 121 GLRSSIVSYGNVSLDLTARSFSAGGVPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D+ I+ ++ +LRK+L+ + T G GY L + A + Sbjct: 181 LDDDLSPNAIEQYVSRLRKRLAPYG---LTVRTARGIGYYLDKAANPQ 225 >gi|92113906|ref|YP_573834.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796996|gb|ABE59135.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 220 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L I+ L E + V G IE F A+ILDLGL D+ G Sbjct: 1 MRILLVEDDPLLGDGIKTALVREAYTVDWFTEGHHAIEAAHNETFSAMILDLGLPDMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + P+ IL+ ++E+++ GL +GADDY+ KPF+ +EL+AR+R + RR+ Sbjct: 61 TVLKRLR-ESTALPILILTARDAVEERISGLDAGADDYVLKPFDLKELLARLRVVTRRAE 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + G LS++ + +V G + L +EY ++ L+ + L++ + LY Sbjct: 120 GRASRSLTLGALSIDEASHSVSWHGRDVALGRREYALLLELARHPDKVLSRPRLESLLYG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V + LRKKL K+ I TV G GY L +A Sbjct: 180 WGEEVASNAVEVHVHHLRKKLD-----KSLIMTVRGIGYRLDPHA 219 >gi|297571976|ref|YP_003697750.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932323|gb|ADH93131.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 226 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 128/226 (56%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD A++ + E ++V G++ I+L D ++LDLGL D+ G + Sbjct: 3 KVLIVEDDSAISGPLVRAFTREGYDVTSVATGQEAIDLVS-SSIDLMVLDLGLPDMDGLD 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA R S P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RRS Sbjct: 62 VARAARTEGQSCPILILTARAEEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRSVS 121 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ +I D+SV++ A + + LTGKE++++ +L + +++E + ++ Sbjct: 122 SDETVGMIKAQDVSVDISAHRAYLGDEELQLTGKEFELLTILLRSAGSVVSRESLMATMW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E K +D+ + LR+KL + +YI TV G G+ ENA Sbjct: 182 SKDIETSTKKLDMHVSWLRRKLGDDVTEPHYITTVRGMGFRF-ENA 226 >gi|302530673|ref|ZP_07283015.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439568|gb|EFL11384.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 222 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 132/221 (59%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A ++ L +E F V V G DG+ +++DA++LD+ L ++ G+ Sbjct: 1 MRLLIVEDELEFAETLRRGLVAEGFTVNVAHTGRDGLWSAMEHDYDAVVLDIMLPELSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR A+ TPV +L+ D+ GADDY+SKPF+ L+AR+RA++RR Sbjct: 61 EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLLARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ A+TV RI LT +E+ ++E L R+ LTK L H++D Sbjct: 121 PARPAVLTAGDLQLDPAARTVHRGETRIELTAREFGLLEFLLRRQGAALTKNEILGHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +++V++ LR+K+ +A G IETV G GY L Sbjct: 181 AHYEGDENVVEVYVGYLRRKI-DAPFGTRTIETVRGVGYRL 220 >gi|183600334|ref|ZP_02961827.1| hypothetical protein PROSTU_03896 [Providencia stuartii ATCC 25827] gi|188020124|gb|EDU58164.1| hypothetical protein PROSTU_03896 [Providencia stuartii ATCC 25827] Length = 220 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + +++ L F + G+ G +DA+ILDL L + G Sbjct: 1 MRILLIEDDRLIGDGLKVGLSQLGFTIDWFADGKQGQVALFDAPYDAVILDLSLPSVDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ R PV IL+ +++ +V+GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 EILKFWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALAEVAARLQALIRRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ G + ++ A TV G RI L KE ++ L N L++ LY+ Sbjct: 121 GQLSPILKHGHIEMDPVAMTVTCHGERIELKSKELSLLSLFLHNPNKVLSRAFIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V I LR+KL G +I TV G GY L E A Sbjct: 181 WDEEVSSNAVEVHIHHLRRKL-----GTRFIRTVHGVGYRLGEEA 220 >gi|154504864|ref|ZP_02041602.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149] gi|153794747|gb|EDN77167.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149] Length = 223 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 132/221 (59%), Gaps = 8/221 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + I L+ ++ V GE+ ++ K E+D ++LD+ L + GF+ Sbjct: 5 KILVVDDEKLIVKGIRFSLEQDDMEVDCAYDGEEALQYAKNCEYDLVLLDVMLPKMDGFQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ S DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 65 VCQAIREFS-DMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAR 123 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +S ++V G++ ++ +++ V + I+LT KEY ++ELL++ N ++E L+ Sbjct: 124 KEESAQTAKILVKGNMRIDCESRRVFIGEREINLTAKEYDVLELLAMNPNKVYSRENLLD 183 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216 ++ G D P + + +DV I +LR+K+ Y+ T WG Sbjct: 184 LVW-GVDYPGDARTVDVHIRRLREKIELNPSEPKYVHTKWG 223 >gi|71906819|ref|YP_284406.1| two component transcriptional regulator [Dechloromonas aromatica RCB] gi|71846440|gb|AAZ45936.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 221 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA SI L+ F V E +D I+D+GL + G Sbjct: 1 MRILLVEDDTMLAESICEGLEKGGFTVDRLGAAEPAESALGLTHYDLAIIDIGLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++R +R+ + PV IL+ ++D++ GL GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 ELIRRVRLRGLQVPVLILTARDGLDDRISGLDLGADDYMVKPFQLPELLARMRALIRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S + G + ++L + G + LTG+E+++++ L L + K+ L + Sbjct: 121 SAASSELAAGGIRLDLARRVATAHGEIMDLTGREWEILQQLMLASPNVVGKQKMAESLSE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++++I +LR+KL G I T+ G GY L E Sbjct: 181 WENEISANAVEIYISRLRQKLQ---GCGIEIRTIRGIGYRLDE 220 >gi|210609810|ref|ZP_03288117.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787] gi|210152737|gb|EEA83743.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787] Length = 229 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L + V GE+ +EL K E+D ++LD+ L + GF Sbjct: 4 RVLVVDDEKLIVKGIRFSLMQDGMEVDCAYDGEEALELAKNNEYDLLLLDVMLPKMDGFA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIRDFS-DVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGR 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +++V D+ ++ +++ V +Q I+LT KE+ ++ELL+ + ++E LN Sbjct: 123 KEEKTVESNVLVKHDMKIDCESRRVFIQEREINLTAKEFDLLELLAKNPDKVYSREKLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY R Sbjct: 183 LVWGYEYPGDARTVDVHIRRLREKIEKHPSDPKYVYTKWGVGYYFR 228 >gi|50085985|ref|YP_047495.1| transcriptional regulator [Acinetobacter sp. ADP1] gi|49531961|emb|CAG69673.1| transcriptional regulator [Acinetobacter sp. ADP1] Length = 226 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A S +LK F V + G DG+ FD ++LDLGL + G + Sbjct: 3 KILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQSFDLVLLDLGLPMMDGMQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R K PV I+S +E++V GL GADDY+ KP+ +EL+ARI A++RR+ Sbjct: 63 VLKQIR-QKTGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTNS 121 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S ++ G++ +N++ QG I L+ +E+ ++ L N +K Sbjct: 122 KDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKANLE 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + LYD E I+V+I LR KL GKN+I T+ G GY L + + Sbjct: 182 DKLYDFDSEVTSNTIEVYIHHLRSKL-----GKNFIRTIRGLGYRLGQTS 226 >gi|330821858|ref|YP_004350720.1| Heavy metal response regulator [Burkholderia gladioli BSR3] gi|327373853|gb|AEA65208.1| Heavy metal response regulator [Burkholderia gladioli BSR3] Length = 226 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ +V + G DG+ L + +D I+LD+ L + G+ Sbjct: 1 MRILVVEDEPKTGAYLKKGLEESGMSVDLATDGADGLLLAEEEPYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +K +TPV L+ +ED+VRGL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 AVLQRLRASK-ATPVLFLTARDDVEDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I GDL +++ + V RI LT +E+ ++ LL+ R+ L++ ++++D Sbjct: 120 PRESEWIAIGDLEIDVLRRRVRRGATRIELTPREFALLHLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + ++DV I +LR K+ + K + TV G GYVL KDE Sbjct: 180 MNFDSDTNVVDVAIRRLRVKIDDEFPVK-LVHTVRGVGYVL--ELKDEA 225 >gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system [Frankia alni ACN14a] gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system [Frankia alni ACN14a] Length = 246 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A + L E + V V G D + +DAI+LDL L I GF Sbjct: 1 MRVLVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRATEIAYDAIVLDLMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR PV +L+ ++D++RGL +GADDY+ KPF+ EL AR+RA+VRR Sbjct: 61 EVCRRLRAGHRWAPVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H ++ G + ++ V G + L+ KE+ ++ LL + LT+ H++D Sbjct: 121 VHRPVVLRAGAVELDPAGHRVWRGGEPVDLSAKEFALLHLLLRHPDQVLTRTYITEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+D ++ LR+K+ + + IETV G GY L Sbjct: 181 DAFDATSNIVDQYVRYLRRKI-DLPPAPSLIETVRGVGYRL 220 >gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 241 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F+V + G + D I+LD+ L D+ GF Sbjct: 16 KLLVVDDEPNIRDLLASSLRFAGFDVSTAEDGSSAFHEAQAVRPDLIVLDVMLPDMDGFT 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A ++TPV L+ + DK++GL G DDY++KPF EE+VARIRAI+RR+ G Sbjct: 76 VTRRLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 135 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + GDL ++ DA V+ G I L+ E++++ L + ++K L+H++ Sbjct: 136 GDDEDGKLRVGDLVIDEDAHEVKRAGVDIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + EV I++ +I LR+KL+ I T G GY+LR Sbjct: 196 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 238 >gi|291562138|emb|CBL40954.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 229 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++++A + L+ F V + + GE G++ EFD ILDL L + GFE Sbjct: 3 KILIVEDEESIAELEKDYLELSGFEVEIENDGEAGLKRAISEEFDLFILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K +TPV ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICKKIRETK-NTPVIMISAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLSRYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V V G + T KE+ ++ L+ N TKE Sbjct: 122 LIGSGTPVNDIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRFK 228 >gi|172061615|ref|YP_001809267.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994132|gb|ACB65051.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 242 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + H + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 218 >gi|78484350|ref|YP_390275.1| two component transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78362636|gb|ABB40601.1| two component transcriptional regulator, winged helix family [Thiomicrospira crunogena XCL-2] Length = 223 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ L +++ L + + V GE+ + L +E+D IILDLGL G + Sbjct: 3 KILLVEDEALLVENLKKNLSQQQYIVDSALDGEEALYLLNEFEYDLIILDLGLPKKSGLQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL +R + +TPV IL+ ++ +++V GL+ GADDY+ KPF+ EEL+ARI +++R Sbjct: 63 VLEQIRADQNTTPVLILTARNTWQERVEGLKKGADDYLGKPFHFEELLARIEVLLKRPTQ 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + ++LD + ++V+ R LT E+ + L N +K+ + L D Sbjct: 123 PQARRLQFQEYELDLDCRELKVKEQRFALTKTEFALARLFLSHPNRVFSKDTLMQRLGDQ 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + +I+V+I KLR+ + GK IET+ G+GY Sbjct: 183 HHERDSNLIEVYIRKLRQYM-----GKTAIETLRGQGY 215 >gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] Length = 240 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 133/238 (55%), Gaps = 12/238 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ +++ ++ L+ F V G+ G + K +FD IILDL L + G + Sbjct: 4 RILVVDDEPSISTLLQYNLEQAGFEVETKLDGQAGFDRAKEADFDLIILDLMLPGMDGMD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR +I P+ +L+ DKV GL+ GADDY++KPF+ E+ AR+RAI+RR Sbjct: 64 VCRQLRQEQIFVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAILRRIEQ 123 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +G +S+ + DL++ V V+ + LT KE++++ L+ K LT Sbjct: 124 TGGAVAKNEQGKGKSIQI-ADLTIYPQNYEVYVKKELLTLTPKEFELLVYLADHKGRVLT 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ LN +++ + +I+DV I LR K+ + YI+T+ G GY L E AK+E Sbjct: 183 RDQLLNAVWNYEFVGDTRIVDVHISHLRDKIEPNSKKPVYIKTIRGLGYKLEEPAKNE 240 >gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814] gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814] Length = 229 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + ++V GE+ ++L K +D I+LD+ L GFE Sbjct: 4 RVLVVDDEKLIVKGIRFSLEQDGYDVDCAYDGEEALKLAKENAYDIILLDVMLPKYDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R P+ +L+ DK+ GL GADDYI+KPFN E+ ARI+AI+RR Sbjct: 64 VCQQIREYS-DVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRVSK 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +IV G++ ++ +++ V + I+LT KE+ ++ELL++ ++E LN Sbjct: 123 RDKNQENEKVIVKGEMKIDCESRRVIIGEKEINLTAKEFDLLELLAMNPGKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY R Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYFR 228 >gi|206559345|ref|YP_002230106.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|198035383|emb|CAR51259.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 242 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGIDADTALSMQTFDLLILDLGLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + H + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 218 >gi|167622073|ref|YP_001672367.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352095|gb|ABZ74708.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 225 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 128/230 (55%), Gaps = 12/230 (5%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++EDD A +IE ++K + N+ G G+ L ++D IILD L + Sbjct: 1 MKILMVEDD---ATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS +S ++++V+GL++G DDY++KPF EL+ R +++ Sbjct: 58 DGLKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117 Query: 118 RSRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RG + I G L++ L + V + G I L KE+Q+++ L N +++ + Sbjct: 118 --RGESLPTITDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLL 175 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 176 FEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQG 224 >gi|160895466|ref|YP_001561048.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160361050|gb|ABX32663.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 262 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGF 60 R L+IEDD A I L+ + V V G GI + +D IILD L + G Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR TPV +LS +S+ +++VRGL++G DDY++KPF EL AR+ A+VRR++ Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + DL +NL ++ E G + L +E++++ L + +T+ M L ++ Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D R +P+ +IDV I +LR K+ + I TV G GY L + +D Sbjct: 211 DYRFDPQTNVIDVHISRLRGKV-DKGFEPALIHTVRGVGYSLSDRPQD 257 >gi|325123266|gb|ADY82789.1| two-component system, OmpR family, response regulator [Acinetobacter calcoaceticus PHEA-2] Length = 219 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 11/222 (4%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +IEDD +A S +L+ F V + G DG+ +FD I+LDLGL + G +VL+ Sbjct: 1 MIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPMMDGMQVLK 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 +R + +TPV I+S ++++V GL GADDY+ KP+ +EL+ARI A++RRS AQ Sbjct: 61 QIR-QRAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGVEAQ 119 Query: 125 -----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L+ +GDL +N++ +G RI L+ +E+ ++ L N +K + LY Sbjct: 120 LANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILVPLMSHPNKIFSKANLEDKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + I+V++ LR KL GK++I T+ G GY L Sbjct: 180 DFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 216 >gi|325262811|ref|ZP_08129547.1| DNA-binding response regulator PhoP [Clostridium sp. D5] gi|324031905|gb|EGB93184.1| DNA-binding response regulator PhoP [Clostridium sp. D5] Length = 224 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ L I L++E++++ G ++ E+DA+ILD+ + + G Sbjct: 1 MRILLAEDEPDLNRLIMDKLRAEHYSMDSCRDGRAALDYLAAAEYDAVILDIMMPVVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + PV +L+ SIED+V GL +GA+DY+ KPF EEL+ARIR ++R R Sbjct: 61 TVLKKLRAQGKNIPVLLLTARDSIEDRVAGLDAGANDYLIKPFAFEELLARIRVLLRTPR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL V LD V G +I L+GKE+ ++ + + L++E HL++ Sbjct: 121 DTGGVCCRVDDLEVRLDTHEVSRGGKQITLSGKEFALLRYMIQNEGIVLSREKMEQHLWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +IDV+I LRKK+ K I TV G GYVL+ Sbjct: 181 YDYPGGSNVIDVYIRYLRKKVDEGYETK-LIHTVRGTGYVLK 221 >gi|239629145|ref|ZP_04672176.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239519291|gb|EEQ59157.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 229 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++IED+K + + IE +L +N+ V G DG++L ++ D ++LDLGL D+ G E+ Sbjct: 7 IIIIEDEKNICNFIETVLTPQNYQVTCAYTGTDGLKLINTHKPDVVLLDLGLPDMDGLEI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ +R A S P+ ++S + KV L GADDY++KPF EL+ARIR +R S+ + Sbjct: 67 IQEVR-AYSSVPIIVISARTMERSKVAALDMGADDYLTKPFGTAELLARIRTALRHSQRN 125 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S G L ++ + + V+V +HLT EY+++ LL+ LT E ++ ++ Sbjct: 126 VSENSKYDVGGLLIDFERRLVKVNDQEVHLTQIEYKLVSLLAQNAGRVLTYETIISKIWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+ V + +R+KL YI T G GY +RE Sbjct: 186 PFADSDNQILRVNMAHIRRKLEENPAEPKYIFTEIGVGYRMRE 228 >gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 229 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + I +L E + V + G + + + D +ILDL L D+ G E Sbjct: 5 KILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKESPDLVILDLWLPDLDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR AK + PV I+S DK+ G GADDY++KPF+ ELV R++A++RR +G Sbjct: 65 VCRQLR-AKYAIPVIIVSARGEEADKIAGFTLGADDYVTKPFSPAELVLRVKAVLRRVQG 123 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I L ++ ++TVE+ G I+LT +E+ ++ +L+ N +++ LN Sbjct: 124 SDSWKGREVIRVRGLVIDRASRTVELNGVPINLTAREFDLLWILASHPNRVFSRDQLLNL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I +LR+KL I+TVWG GY Sbjct: 184 VWKNEFGADPATVTVLIRRLRQKLEKDPEKPELIKTVWGVGY 225 >gi|257065604|ref|YP_003151860.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256797484|gb|ACV28139.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 223 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDG---IELCKFYEFDAIILDLGLT 55 M++L++ED++ L L L E ++ YVTD+ DG ++L ++D IILD+ L Sbjct: 1 MKVLIVEDERKL-----LRLLDEGLSLLGYVTDMARDGKEALDLAFVEDYDIIILDINLP 55 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 GFEVLR +R + +L+ S I+D+V+GL GA+DY++KPF+ +EL AR+R++ Sbjct: 56 KKDGFEVLRDIRQFDKEVNIIMLTARSDIDDRVKGLDFGANDYMTKPFDLKELDARMRSL 115 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +RR + I ++ + + V +G + LT KE +IE L L + ++ E + Sbjct: 116 LRRKSIMEEKDITIDGITFDTVKREVIFEGSPLTLTAKETGIIEYLFLNRERYVSVEELM 175 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 NH++D + + V + LRKK+ A GKNYIE V G+GY + E Sbjct: 176 NHVWDSNADDFSNTVRVHMSSLRKKIKKAT-GKNYIENVIGKGYKIYE 222 >gi|282900319|ref|ZP_06308270.1| hypothetical protein CRC_02195 [Cylindrospermopsis raciborskii CS-505] gi|281194824|gb|EFA69770.1| hypothetical protein CRC_02195 [Cylindrospermopsis raciborskii CS-505] Length = 229 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57 M IL++EDD L S+ L E + V GE ++ +D II+D+ L + Sbjct: 1 MWILVVEDDYYLTESLTEALTMERYEVECVRDGEAAWRRLQDLSVINYDLIIMDITLPKL 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G + + LR + P+ +L+ +I DK+ GL +GAD Y+ KPFN +EL+A++RA++R Sbjct: 61 DGIRLCQKLRDHGCTLPILMLTARDTISDKITGLDAGADSYMVKPFNLQELMAQVRALLR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKEMFLN 176 R + + + GDLS++ V IHLT KE+ ++E L LR N + T+ + ++ Sbjct: 121 RGKPVTNNTLTWGDLSLDFSTYKVLYGKKPIHLTPKEFALMEAL-LRCNGRIATRSILID 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + PE + I +I LR KL N KN IET+ G GY L+ Sbjct: 180 QIWAWENPPEEETIKTYIRNLRAKLINVGAPKNLIETIHGVGYRLK 225 >gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 235 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ + + L+ F V G D + + + D I+LD+ L D+ GF+ Sbjct: 8 RLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVMLPDMDGFD 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR TPV L+ + EDK+RGL +G DDY++KPF+ EE+VARIRA++RR+ Sbjct: 68 VVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRRTGA 127 Query: 122 ---HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+ +T D+ ++ ++ V +G + L+ E++++ L+K L+H Sbjct: 128 GDLPARPPRLTFADIELDEESHEVWRRGRAVALSPTEFKLLRYFMANAGRVLSKAQILDH 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D +V I++ ++ LR+K+ NA I T+ G GYVLR Sbjct: 188 VWDYDFRGDVGIVESYVSVLRRKIDNA--DPRLIHTLRGVGYVLR 230 >gi|226228544|ref|YP_002762650.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091735|dbj|BAH40180.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 226 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 1/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L + L+ F V V GE I ++DAIILD+ + G Sbjct: 1 MRILLAEDDTRLHDLLARALRERAFAVDVVADGEAAIIEAAVNDYDAIILDVTMPRRSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR TP+ +L+ ++ D+V GL +GADDY+ KPF +EL+AR+RAI+RR Sbjct: 61 EVCAELRKRGKRTPILMLTARDALTDRVAGLDAGADDYLVKPFELDELLARLRAIMRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 IV GDL V+ A+ G ++LT +EY ++ L+ + + + +H++D Sbjct: 121 VLQDERIVVGDLVVDTRAQQATRAGVPLNLTTREYTLLAYLARQAGRVIGRAELTDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +P ++V++ ++RKKL + + + T G GY+L + D Sbjct: 181 ANHDPASNALEVYVGRVRKKLESVS-DTPLLHTRRGAGYLLSADVTD 226 >gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis ZC1] gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis ZC1] Length = 230 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD+A+ ++ L E FNV GE+ + C FD +ILD+ + + G EV Sbjct: 5 ILLVEDDEAIREMVDNYLTMEGFNVTTATNGEEALHNCLQNTFDLVILDIMIPKLNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R + + P+ I+S S DK GL GADDYI+KPF+ E AR++A++RR+ + Sbjct: 65 LKIIR-EQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATKY 123 Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + Q ++ +L +++ ++ G I LT KE+ +++L + TKE Sbjct: 124 SSQAEQKQEVLEIDNLKIDIVNFSIAKSGQEIKLTSKEFSILKLFVTNRQRVFTKEQIYQ 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + II+V I +LR+K+ + YI+T+WG GY Sbjct: 184 MIWKDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGY 226 >gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 227 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED++ LA ++L L E + V V + G G+ + E D ++LD + + G Sbjct: 6 VRILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGLMAARDSEPDLVLLDWMMPGLTGV 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR PV +L+ IED+V GL +GADDY+ KPF+ EEL+AR+RA +RR++ Sbjct: 66 EVCRRLRATGAMMPVILLTAKDGIEDRVAGLDAGADDYVVKPFSIEELLARVRAHLRRNQ 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DLS+N + V I LT KE+ +++ L LT++ L ++ Sbjct: 126 PEDPESFLFADLSLNRKTREVRRGDRLIELTAKEFDLLDYLISHPKQVLTRDRILEEVWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + II+V+I LR KL A I+TV G GYV+R Sbjct: 186 YDFMGDSNIIEVYIRYLRLKL-EAENESRLIQTVRGVGYVMR 226 >gi|292493049|ref|YP_003528488.1| response regulator receiver [Nitrosococcus halophilus Nc4] gi|291581644|gb|ADE16101.1| response regulator receiver [Nitrosococcus halophilus Nc4] Length = 219 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 124/220 (56%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ ALA + + K + V G D + +D +ILDLGL + G Sbjct: 1 MRLLLVEDNIALADELLPLFKGHGYAVDWRVDGRDALLAAHDDPYDLVILDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R ++ PV IL+ + +++ GL++GADDY+SKPF+ +EL+ R++A++RRS Sbjct: 61 QVLQRWRAEGLTLPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSH 120 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S + G L+++ D +++ LT E++++ L L++ HLY Sbjct: 121 GAVNSPRLEVGGLALDEDRQSIWRGDQEYELTRGEFRLLRCFMLHPGKLLSRMQLNEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG E + +++V I +LR+KL G IET G+GY Sbjct: 181 DGESERDSNVLEVHINRLRRKL-----GHQVIETRRGQGY 215 >gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 238 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + + L+ F V+ G ++L E D ++LD+ L D+ GF + Sbjct: 9 LLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLAAEVEPDLLVLDVMLPDMDGFTI 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV L+ S++DKV+GL G DDY++KPF+ EE+VARIRAI+RRS Sbjct: 69 TRRLRERDQHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRSHAE 128 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q+ ++ DL++N D V G I ++ E+ ++ L + L+K L+H+ Sbjct: 129 DQADEDRVLTFEDLTLNEDTYEVSRAGRVIEVSPTEFNLLRYLMQNPHRVLSKAQILDHV 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D E+ I++ +I LR+K+ + G I T G GYVLR Sbjct: 189 WDYDFRGEMGIVESYISYLRRKI-DTEGLPPLIHTKRGVGYVLR 231 >gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630] gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13 [Clostridium difficile] Length = 230 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 129/223 (57%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLI+DDK L + +E LK+ENF V V G+ G++ K + IILD+ L + G++ Sbjct: 3 KILLIDDDKDLCNLLERELKNENFEVIVCHDGQTGLDTFKKQNYQLIILDIMLPAMNGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL +R + PV +L+ S DKV GL+ GADDY++KPF E VAR+++++RR Sbjct: 63 VLTEIRKLN-NVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLIRRFTV 121 Query: 120 -RGHAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H + I L +++ +TV + ++I+LT +E+ ++ L+ + TKE Sbjct: 122 FNNHTEENITLKFKGLQIDVTLRTVLLNDNQIYLTAREFDLLYFLASNQGRVFTKEQIYT 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 H+++ + + I F+ KLRKK+ N +YI+T+ G GY Sbjct: 182 HVWNNEYSYDDRNIMSFVSKLRKKIKNEKLDIDYIQTIHGIGY 224 >gi|149908081|ref|ZP_01896749.1| Two component response regulator [Moritella sp. PE36] gi|149809087|gb|EDM69018.1| Two component response regulator [Moritella sp. PE36] Length = 226 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LLIEDD + + + E + V G DG+ L +D I+LD+ L G Sbjct: 1 MNVLLIEDDLHITRFLTQGFRQEGYTVMHAGDGIDGLHLATTEHYDVIVLDIMLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR +TPV ILS S+E++V GL+SGADDY+ KPF+ EL AR + + RR R Sbjct: 61 AVLSELRGRGYTTPVIILSAKHSVEERVFGLKSGADDYLVKPFSFSELSARCQILTRRDR 120 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + + DL ++L +T+ ++L +E+ +I+LL T L+K L + Sbjct: 121 SQATPVHQLCYHDLKLDLLKRTLHRSNQLLNLNQREFVLIQLLLQNAETVLSKTAILEQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222 + + +P+ ++DV +C+LR K+ K++ I T+ G GYVL+ Sbjct: 181 WGYQFDPQTNVVDVLVCRLRSKVD-----KDFELPLIHTIRGVGYVLK 223 >gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 225 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+D++ ++L L+ E F V GE G++ + +D +ILD+ L + GF Sbjct: 3 KLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEKGLDKVRLGNYDLVILDIMLPKLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ DK+ G++ GADDY++KPFN EL+ARIRA++RR+ Sbjct: 63 VCREIRTFS-NIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I G+L +N+ + V +G RI LT KE++++ LL+ TK+ L+ + Sbjct: 122 PYIKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + V + KLR+K+ + YI T WG GY ++ Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225 >gi|239623923|ref|ZP_04666954.1| sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA] gi|239521954|gb|EEQ61820.1| sensor histidine kinase [Clostridiales bacterium 1_7_47FAA] Length = 227 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ + ++ L+ + V + G + +LC +D ++LDL L + G Sbjct: 1 MRLLIIEDEEDMREALCYGLRKLGYAVDSSGDGAEAAQLCYINHYDLVVLDLNLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR ++ + T V ILS S + DK+ GL GA DY++KPF+ +EL ARIR ++RRS Sbjct: 61 EVLRHIQSQENPTKVLILSARSELTDKIAGLDGGASDYLTKPFHFQELEARIRMLLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + ++ G L ++ +A+T G + LT +E+ ++E L + ++ E + H++D Sbjct: 121 TQADAALMWGGLCLDTNARTASCNGIPLELTMREFAILEYLMMHMGRPVSAEELMEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P + V+I +R+KL A I + G GY++ Sbjct: 181 SEADPFSNQVKVYISVIRRKLL-AVTKDEIIRNIRGAGYLI 220 >gi|160947611|ref|ZP_02094778.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270] gi|158446745|gb|EDP23740.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270] Length = 227 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ + ++ L+ E F V + GE G+EL Y +ILD+ L I GFE Sbjct: 3 KILLVEDEENIRLFTKINLEREGFEVLEAESGEIGVELALKYNPQVVILDVMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V + LR + +L+ + D++ GL+SG DDY+SKPFN EL+ RI++++RR S Sbjct: 63 VCKILREKLPKIGIIMLTAKTQDVDRINGLESGTDDYLSKPFNPVELILRIKSLIRRLDS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ LI ++L +K+ G I LT E +I + ++ LN + Sbjct: 123 IQNSSDLINIYPFRLDLYSKSFYKDGKEIELTPTELTIITIFMSNPGKAFSRNELLNMTW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E ++KI+DV I +LR K+ + + YIETVWG GY N Sbjct: 183 GEEFEGDIKIVDVNIRRLRAKIEDNSSKPKYIETVWGTGYRWNSN 227 >gi|15675198|ref|NP_269372.1| putative response regulator [Streptococcus pyogenes M1 GAS] gi|71910761|ref|YP_282311.1| transcriptional regulatory protein [Streptococcus pyogenes MGAS5005] gi|13622364|gb|AAK34093.1| putative response regulator [Streptococcus pyogenes M1 GAS] gi|71853543|gb|AAZ51566.1| transcriptional regulatory protein [Streptococcus pyogenes MGAS5005] Length = 224 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 131/224 (58%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++SI L + V D G++G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GDEGLYEAESGIYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I PV I++ ++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKELREKDIKIPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A I G+L V+L K V+V+G + L GKE+ ++ L +N L K + L+ Sbjct: 121 KFADKNISFGNLVVDLARKEVKVEGKVVELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++V+I K+RKKL N ++T+ GY+L+ N Sbjct: 181 FDSDTTISVVEVYISKIRKKLKGTC-FVNRLQTLRSVGYILKNN 223 >gi|293603411|ref|ZP_06685838.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|292818184|gb|EFF77238.1| two component response regulator [Achromobacter piechaudii ATCC 43553] Length = 228 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 122/232 (52%), Gaps = 9/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL+ED++ +A + L F V D D F E+DAI++DL L D Sbjct: 1 MRILLVEDERDMASWLMRALAQSGF---VPDHAADARTAEAFMAGTEYDAIVMDLRLPDK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VLR +R TPV +L+ +++D+VRGL GADD+++KPF EEL AR+ A+VR Sbjct: 58 HGLVVLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG + G LS + +++ + G + LT +E+ + L R + K Sbjct: 118 RSRGRQHPRLQCGSLSYDSESRAFTLDGSLLFLTPREHAALAALLTRSGYPVDKSQLFGK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ E I+V + +LRKKL AG I TV G GY+L A + T Sbjct: 178 VFTHDSEANPDAIEVVLHRLRKKL---AGSDVRIVTVRGLGYMLESVASEST 226 >gi|293376525|ref|ZP_06622753.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325845461|ref|ZP_08168752.1| response regulator ArlR [Turicibacter sp. HGF1] gi|292644751|gb|EFF62833.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325488480|gb|EGC90898.1| response regulator ArlR [Turicibacter sp. HGF1] Length = 226 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA +I +LK+ ++V V G+ G++ +D IILD+ L + GF Sbjct: 1 MRILVVEDEIRLAEAISQILKTNKYDVDVFHDGQSGLDYALTGIYDLIILDIMLPKLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R KI TP+ L+ I DKVRGL GADDY++KPF EEL+ARIR ++RR Sbjct: 61 DILKMCRQDKIKTPILFLTAKDEIADKVRGLDLGADDYLTKPFATEELLARIRVLLRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + D +NL + + L KE+ ++ L N +TKE+ + ++ Sbjct: 121 EITTDTLRFHDAELNLSTYELSCGVKSVKLGLKEFNILNYLFSNGNQIVTKELLIEKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + E ++V+I LRKKLS I TV G GY L N E+C Sbjct: 181 FDADVEYNNVEVYISFLRKKLSFIKSNV-IIRTVRGVGYCLGVN---ESC 226 >gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842] gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842] Length = 228 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD +ILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 64 ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S H +S++ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ I V I K+R K+ + YI+TVWG GY Sbjct: 183 EAVWKEVFYKSDNTIMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226 >gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 229 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D++AL + ML+ E ++V V G+ G +L +D +ILD L + G Sbjct: 1 MRILLVDDEEALTAPLHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R++R PV L+ +++D+V+GL +GADDY+ KPF +EL+AR+RA++RRS Sbjct: 61 DLCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRSP 120 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + GDL ++ + QG RI L+ KE Q++ +L ++ + Sbjct: 121 RQETSEAPRLAGGDLELDTPNQLAYRQGRRIELSEKETQLLAVLMQHPGQLVSHQELQAQ 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + P ++ I LR+KL A G I +V+G+GY Sbjct: 181 VWGSANPPSSNVLAAQIRLLRRKL-EAPGETPLIFSVYGKGY 221 >gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676] gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676] Length = 233 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD IILD+ + ++ G E Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKVEDAIQALQLLEEKEFDLIILDIMMPNMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 69 ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S H +S++ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 231 >gi|134096719|ref|YP_001102380.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009616|ref|ZP_06567589.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909342|emb|CAL99454.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 220 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ ED+ +A IE L++ F V G+ ++ +FD ++LDLGL GF Sbjct: 3 KILIAEDEARIAAFIEKGLRANGFTTTVVGDGDTALDYVLTGDFDLVVLDLGLPGKDGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLRALR +++ PV IL+ S+ D V GL+ GADDY++KPF EEL+AR+R +R + R Sbjct: 63 VLRALRAQRVTVPVIILTARDSVHDTVAGLEGGADDYMTKPFRFEELLARVRLRLRPTDR 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G+LS++L + +V + LT +E+ M+EL L++E L+H++ Sbjct: 123 APEVTVLRDGELSLDLRTRRAQVPEGTVDLTAREFSMLELFLRHSGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ LR+K+ G I TV G GY L Sbjct: 183 YDFDPGSNVVDVYVRALRRKI-----GSTRIHTVRGMGYRL 218 >gi|269977562|ref|ZP_06184529.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1] gi|307701335|ref|ZP_07638356.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris FB024-16] gi|269934165|gb|EEZ90732.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1] gi|307613496|gb|EFN92744.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris FB024-16] Length = 225 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 14/225 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD A+A + L E + V G G L + D +ILDLGL D+ G + Sbjct: 3 KVLLVEDDPAIAEPLARALGREGYEVSAQTTG--GAALQQVGGCDIVILDLGLPDMDGLD 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R I+ P+ IL+ + D V GL SGADDY++KPF EL+AR+RA++RR+ G Sbjct: 61 VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174 VT D + VEV HR + LT KE+ ++ +L + +++E Sbjct: 121 E-----VTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQV 175 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ K +D+ + LR+KL + A YI TV G G+ Sbjct: 176 MREVWGSDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGF 220 >gi|156936234|ref|YP_001440151.1| transcriptional regulatory protein YedW [Cronobacter sakazakii ATCC BAA-894] gi|156534488|gb|ABU79314.1| hypothetical protein ESA_04133 [Cronobacter sakazakii ATCC BAA-894] Length = 226 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 132/229 (57%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED+ +E L+ V G DG+ L ++ IILD+ L + G+ Sbjct: 1 MKLLLIEDNDKTRAWLEKGLREAGLVVDTVADGRDGLHLALEQDYALIILDIMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR AK +TPV L+ ++ D+V+GL+ GADDY+ KPF+ EL+AR+RA +RR Sbjct: 61 QVLRALRTAK-ATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHA 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +L V DL+++ G RI LT +E+ ++ LL+ R L + + + ++ Sbjct: 120 PAAATLQV-ADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + E ++DV I +LRKK+ + K IETV G GY R NA +++ Sbjct: 179 INFDSETNVVDVAIRRLRKKIDDPFPLK-LIETVRGMGY--RLNAPEQS 224 >gi|119383064|ref|YP_914120.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119372831|gb|ABL68424.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 223 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ +LA + +L+ + V V G L FD +ILDL L + G Sbjct: 1 MRILLVEDNLSLAEGLTALLRQSGYAVDVVHDGASAEALAAAESFDLVILDLNLPQMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRA+R + V IL+ + E++VRGL GADDY+ KPF+ E ARIR+++RR Sbjct: 61 EVLRAMRARRNPAAVMILTARGAPEERVRGLDLGADDYLIKPFDIGEFEARIRSLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S + GDL ++ A++ + G + L +E ++ELL +R + +E + L Sbjct: 121 GLRNSTVSFGDLVLDQTARSFLLAGQPLDLPARERGLLELLIMRAGKVVARESIVQSLTS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ I+ ++ +LRK+L+ A + T G GY L Sbjct: 181 LEDDLSANAIEQYVSRLRKRLAPAG---LTVRTARGIGYFL 218 >gi|218438325|ref|YP_002376654.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218171053|gb|ACK69786.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 226 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+ L + +L E + + V D G+ G++L + +D +ILD L + G Sbjct: 1 MRILLVDDEVELTEPLRQVLSKEGYTIDVADNGKTGLQLALNHGYDLLILDWMLPYLSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR +TPV L+ +++D+V GL GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 EICQQLRSQGKTTPVLFLTAKDTLDDRVMGLDVGADDYLIKPFQLRELLARVRALLRRSP 120 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q + DL ++ + + G I L+ KE ++ L LT E Sbjct: 121 TFEANISQERLKAADLELDPENQMAYRHGRGISLSEKEVMLLSYFMLHPGQLLTHEQIYQ 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 HL+ +++P ++ + LR+K+ A G I TV+G+GY Sbjct: 181 HLWTEKEQPNSNVLAALVRLLRRKIE-ADGELPLIHTVYGKGY 222 >gi|49481473|ref|YP_038587.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228929584|ref|ZP_04092602.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935846|ref|ZP_04098658.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948260|ref|ZP_04110543.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124101|ref|ZP_04253293.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 95/8201] gi|49333029|gb|AAT63675.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228659403|gb|EEL15051.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 95/8201] gi|228811247|gb|EEM57585.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823903|gb|EEM69723.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829971|gb|EEM75590.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 230 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|83945607|ref|ZP_00957953.1| two-component transcriptional regulator, winged helix family protein [Oceanicaulis alexandrii HTCC2633] gi|83850973|gb|EAP88832.1| two-component transcriptional regulator, winged helix family protein [Oceanicaulis alexandrii HTCC2633] Length = 223 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ +A +I ML+ V + GEDG+ + + FD +I+D + G Sbjct: 1 MRILIVEDDREVAGNIAKMLRESGHVVDMAHDGEDGLAMARDGAFDVLIVDRMMPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR TP +LS + ++D+V GL +G DDY+ KP+ EL AR+ A+ RR Sbjct: 61 SMISILREEGDKTPALVLSALGEVDDRVAGLTAGGDDYLVKPYAPSELKARVDALARRRD 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ + GDL ++L A+TV+ I L +E++++E L +T+ M L ++ Sbjct: 121 PEALKTRLQVGDLEMDLLARTVKRGEEAIQLQPREFRLLEFLMRHAGQVVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P+ +IDV I +LR K+ + + TV G GY L Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKPF-DTSMLHTVRGAGYRL 221 >gi|117924789|ref|YP_865406.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117608545|gb|ABK44000.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 236 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 9/232 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGFE 61 IL++ED++ LA+++E LK E FN V GE+G+ + + D ++LDL L + G E Sbjct: 5 ILIVEDERDLANTLEYSLKQEGFNARVALTGEEGMRIATVERWPDLVLLDLMLPGVSGIE 64 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 V R +R + PV +L+ DKV G ++GADDY+ KPF ELV RIRAI+RR Sbjct: 65 VCRRMREEDGTRTMPVIMLTARGEEIDKVMGFEAGADDYVVKPFKVRELVLRIRAILRRV 124 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +L+ G L V+L+ V V G LT E++++ RK ++ LN Sbjct: 125 QPEQAESAALVTFGRLKVDLEGHRVWVDGEESSLTAMEFKLLTTFLSRKGRVQNRDTLLN 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + + +D + +LR+KL A Y+ET+ G GY R+ E Sbjct: 185 DVWGVNAFVQTRTVDAHVKRLREKLGPAG---KYMETIRGVGYRFRDRPDGE 233 >gi|288905343|ref|YP_003430565.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306831423|ref|ZP_07464581.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978330|ref|YP_004288046.1| transcriptional regulatory protein CiaR [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732069|emb|CBI13634.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304426208|gb|EFM29322.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178258|emb|CBZ48302.1| Transcriptional regulatory protein CiaR [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 224 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++SI L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +STPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGVSTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + +L+V+ T G + L GKE+ ++ +N L K + ++ Sbjct: 121 KYNDNTLSYEELTVDTSTNTTIANGKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ K+RKKL KN ++T+ GY+L+ Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTTFAKN-LQTLRSVGYILK 221 >gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 226 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 130/224 (58%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F+ V + G + + + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFDAVVANNGPEALAEFERGGADVVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ++ S P+ +L+ + DKV GL+ GADDY++KP++ ELVARIRA++RR RG Sbjct: 63 VCRQLR-SRSSVPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVLRR-RG 120 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++L+ + G + ++++ V V G + L KE+ ++ELL LT+ ++ Sbjct: 121 DVEALVESALEAGPVRMDVERHVVSVDGEPVALPLKEFDLLELLLRNAGRVLTRVQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + K +DV + +LR K+ Y+ TV G GY L Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRAKIEPDPANPKYLVTVRGLGYKL 224 >gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 238 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 128/228 (56%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++++ ++ L F + G+ +L FD I+LDL L ++ G E Sbjct: 4 RILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLAADDSFDLIVLDLMLPEMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ++LR K+STP+ +L+ DKV GL+ GADDY++KPF+ E+VAR+RAI+RRS Sbjct: 64 VCKSLRQLKVSTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRSAV 123 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q S ++ GD+ + + + + + LT KE++++ L+ LT++ Sbjct: 124 PKQDKKEEPETSKVILGDVHIYPENYEIFLHDEPLELTPKEFELLLYLTNHPGRVLTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN +++ + +I+DV I LR+K+ YI+TV G GY L Sbjct: 184 LLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKL 231 >gi|298247348|ref|ZP_06971153.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550007|gb|EFH83873.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 132/221 (59%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ L+ S++ L +E ++V G++G +L + +D IILD+ L G Sbjct: 1 MRILVIEDNYRLSESLKTNLVNERYSVDAAYDGQEGQDLAELAPYDLIILDILLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR ++ TP+ +L+ SI+D+VRGL GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 EVCRELRRRRVQTPILLLTARDSIDDRVRGLDCGADDYLVKPFAMNELLARLRALLRRQQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + G L ++ TVE +G I LT +EY ++E +T++M H+++ Sbjct: 121 PYKSARLEIGSLVIDPATHTVEREGQAIELTPREYALLEYFMYHPGQVVTRDMIEQHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +IDV++ +LR+K+ +A + T+ G GY L Sbjct: 181 YDFECSSNVIDVYVRRLRRKI-DAPFTTKLLATIRGVGYCL 220 >gi|258611893|ref|ZP_05242924.2| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293596316|ref|ZP_05230458.2| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|293597011|ref|ZP_05266512.2| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|300765250|ref|ZP_07075235.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|258606949|gb|EEW19557.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293584711|gb|EFF96743.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293594699|gb|EFG02460.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300514071|gb|EFK41133.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] Length = 233 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 7 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 67 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 126 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q+ ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 127 SQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL A GG+N I+T+WG GY Sbjct: 187 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 229 >gi|187925269|ref|YP_001896911.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716463|gb|ACD17687.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 260 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRIL+ EDD LA +++S + Y D + G+E FD +ILDLGL + Sbjct: 1 MRILIAEDDSILADG---LVRSLRQSAYAVDHVKSGVEADTALSMQSFDLLILDLGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 SGLEVLRRLRARNSTLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +++ G LS + + V I L+ +E ++E+L R ++KE ++H Sbjct: 118 RGAGGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + +E I+V++ +LRKK+ + I TV G GY L Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218 >gi|330002909|ref|ZP_08304459.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] gi|328537146|gb|EGF63418.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] Length = 232 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 6 VKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 66 DIVRMLRTAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLSV+L ++ V RI LT KE+ ++E + L + + + ++ Sbjct: 126 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 186 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 226 >gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 228 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED++ ++ ++ L+ E F V G + I L +D IILD+ L GF Sbjct: 8 LRILIVEDEETISAFLQKGLREEGFVVDSAKDGNEAIRLSSSNPYDVIILDVLLPIKNGF 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR + TPV +L+ + S++++V+GL +GADDY+ KPF +EL+AR+ A++RR R Sbjct: 68 EVCSELRASGNHTPVLMLTALDSVDERVKGLNTGADDYLVKPFAFKELLARVNALLRRPR 127 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DLS++ + TV+ I L+ KEY+++E L+ + L++ ++D Sbjct: 128 ESFDRVLRVSDLSIDTVSHTVKRGDKEIELSPKEYRLLEHLARNAHQVLSRTQIAESVWD 187 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV+I LRKK+ + K I TV G GY L Sbjct: 188 QDFFSDSNVVDVYIRYLRKKIDDPFPTK-LINTVRGFGYKL 227 >gi|118616126|ref|YP_904458.1| two component response transcriptional regulatory protein PrrA [Mycobacterium ulcerans Agy99] gi|118568236|gb|ABL02987.1| two component response transcriptional regulatory protein PrrA [Mycobacterium ulcerans Agy99] Length = 236 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G + + DAI+LD+ + + G V+ ALR P Sbjct: 25 SLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 84 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR A S +I G Sbjct: 85 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSEIITVGP 144 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 L V++ + V G + LT +E+ ++ +L+ K L++ L ++ + ++D Sbjct: 145 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 204 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 VFI LR+KL A GG + TV G G+VLR Sbjct: 205 VFIGYLRRKL-EANGGPRLLHTVRGVGFVLR 234 >gi|311747935|ref|ZP_07721720.1| DNA-binding response regulator [Algoriphagus sp. PR1] gi|126574903|gb|EAZ79261.1| DNA-binding response regulator [Algoriphagus sp. PR1] Length = 222 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +++ ++ L+ E F V + D G+ G+EL +D ++LD L I G Sbjct: 1 MRILVVEDEPGISNFLKQGLEEEAFAVDLADNGKSGLELALSGSYDLLLLDWMLPGISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R R TP+ L+ ++++ + GLQSGA+DYI KPF+ EEL+ RIR +R + Sbjct: 61 ELTRQFRKQFSDTPIIFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIRVQLRAKK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ G + ++ + V I LT KE+ ++E L KN + + ++D Sbjct: 121 G-AKEKFTLGPIVLDTERHIVLKNEQEIQLTQKEFALLEYLMRNKNKVCRRTRIIESVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +IDVFI LRKKL + ++YI+T+ G GY+ +E Sbjct: 180 IHFDYNTGVIDVFINSLRKKL-DLQKDEDYIQTIRGVGYIAKE 221 >gi|312875838|ref|ZP_07735828.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311797319|gb|EFR13658.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 232 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 133/229 (58%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G+EV Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDGYEV 63 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 L+ +R + + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++RR Sbjct: 64 LKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + GD+ V+ +TV+ + L+ KE+++++LL K L ++ L Sbjct: 124 SLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFILQR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|258622113|ref|ZP_05717139.1| DNA-binding response regulator [Vibrio mimicus VM573] gi|258624051|ref|ZP_05719003.1| DNA-binding response regulator [Vibrio mimicus VM603] gi|258583661|gb|EEW08458.1| DNA-binding response regulator [Vibrio mimicus VM603] gi|258585437|gb|EEW10160.1| DNA-binding response regulator [Vibrio mimicus VM573] Length = 236 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S+++ L + + V + G K +F A+ILDL L D+ G Sbjct: 19 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGAGVASALKTEQFTALILDLTLPDMDGL 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A + PV IL+ I D+V+GL GAD+YI KPF EEL+AR+R I+RRS Sbjct: 79 EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 138 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI G+L+++L + + + LT EY+++ L + ++KE+ L+ Sbjct: 139 GSAEELISVGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 198 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKKL + N I+ V G GY++ Sbjct: 199 WDEGSSDNAIEVHIHNLRKKLPD-----NLIKNVRGVGYMI 234 >gi|167748370|ref|ZP_02420497.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662] gi|317472095|ref|ZP_07931427.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167652362|gb|EDR96491.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662] gi|316900499|gb|EFV22481.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 229 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 121/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ A+A + L+ +F V + GE G++L +FD IILD+ L + GFE Sbjct: 3 RVLIVEDELAIAELEKDYLELSSFEVEIETDGEKGLKLGLTEDFDMIILDIMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R R Sbjct: 63 ICKQIREKK-DIPILMVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYRR 121 Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S D L ++ A+ V + G T KE+ ++ L+ N TKE Sbjct: 122 LVSSNTQENDVVEIRGLKIDKTARRVYLNGEEKAFTTKEFDLLTFLASHPNRVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 N ++D ++ + V I K+R+K+ YIET+WG GY Sbjct: 182 NKIWDMESLGDIATVTVHIKKIREKIELNTAKPQYIETIWGVGY 225 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] gi|133737759|emb|CAL60804.1| Heavy metal response transcriptional activator protein [Herminiimonas arsenicoxydans] Length = 231 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ + + L F V + G DG+ + D I+LD+ L + G+ Sbjct: 1 MRILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGW 60 Query: 61 EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E+L ALR K PV L+ +ED+V+GL+ GADDY+ KPF EL+ARIR ++RR Sbjct: 61 ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + I GD+ +++ + V G RI LT KE+ ++ LL+ R++ L++ + + + Sbjct: 121 SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 +D E + +ID + +LR K+ + K I T G GYV Sbjct: 181 WDINFESDTNVIDAAVRRLRSKIDDPFETK-LIHTQRGMGYV 221 >gi|15599970|ref|NP_253464.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa PAO1] gi|116052923|ref|YP_793240.1| two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296391604|ref|ZP_06881079.1| two-component response regulator [Pseudomonas aeruginosa PAb1] gi|9951041|gb|AAG08162.1|AE004891_4 PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa PAO1] gi|115588144|gb|ABJ14159.1| two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 221 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL EDD L I L+ E V +VTD G EFD ++LD+GL G Sbjct: 1 MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTD-GVAAENALVTDEFDLLVLDIGLPRRSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++LR LR + TPV +L+ + D+V GL SGADDY++KPF+ +EL AR+RA+ RR+ Sbjct: 60 LDILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRT 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +V G+L ++ V + G + L +EY ++ LL L++ LY Sbjct: 120 TGRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E I+V + LR+KL N I TV G GY + + A Sbjct: 180 GWSGDVESNAIEVHVHHLRRKLGN-----QLIRTVRGIGYGIDQPAP 221 >gi|325847051|ref|ZP_08169877.1| putative sensory transduction protein RegX3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481023|gb|EGC84068.1| putative sensory transduction protein RegX3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 219 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 4/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I ++EDDKA+ + + L +++ V + G D +EL + D +ILD+ L + G E+ Sbjct: 2 IYVVEDDKAIRNLVLYALSEKDYQVKGFEDGLDIVELVRKESVDLLILDVMLPEKDGLEI 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R S P+ +L+ DKV GL+SGADDYI+KPF+ EL++R++A++RRS Sbjct: 62 LKEIREFS-SIPIIMLTARDGEYDKVMGLESGADDYITKPFSILELISRVKAVLRRSEKK 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G + +N+ +TV+V G +I LT KE++M+ L +T+E FL ++ Sbjct: 121 DREHLNYGSIEINIKKRTVKVDGEKIDLTFKEFEMLLLFMANIGNVITREDFLLKIWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E + +DV I LR KL +A G+N I+TV GY L E Sbjct: 181 YEGETRTVDVHIASLRNKLKSA--GEN-IKTVRNLGYKLGE 218 >gi|229118027|ref|ZP_04247387.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-3] gi|228665476|gb|EEL20958.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-3] Length = 230 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G+ + LT KE+++++L +N TK Sbjct: 124 STTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA [Mycobacterium ulcerans Agy99] gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans Agy99] Length = 232 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/235 (35%), Positives = 133/235 (56%), Gaps = 14/235 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 +RIL+++DD+A+ S+ +S +FN Y +L DG+E + DA++LD+ + + Sbjct: 3 VRILVVDDDRAVRESLR---RSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRL 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 60 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119 Query: 118 RSR----GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R++ A S+ +T DLS++ + V RI LT E+ ++E+L LT+ Sbjct: 120 RTKLEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRS 179 Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 180 RILEEVW-GFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 232 >gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 225 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+D++ ++L L+ E F V GE+G++ + +D +ILD+ L + GF Sbjct: 3 KLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLDKVRLGNYDLVILDIMLPKLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ DK+ G++ GADDY++KPFN EL ARIRA++RR+ Sbjct: 63 VCREIRTFS-NIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALLRRATN 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I G+L +N+ + V +G RI LT KE++++ LL+ TK+ L+ + Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + V + KLR+K+ + YI T WG GY ++ Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225 >gi|116333023|ref|YP_794550.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098370|gb|ABJ63519.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 230 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 128/229 (55%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED+KAL+ I +++ D GE G L FDAIILDL L G + Sbjct: 6 KVLVVEDEKALSADIVELIEPICETTTAFD-GEQGEFLASQGVFDAIILDLMLPGESGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L +R + TPV IL+ +I DK+RG GADDY++KPF++EEL+AR++A+++R+ G Sbjct: 65 LLLHIRNQGVKTPVLILTAKDTIADKLRGFNDGADDYVTKPFHREELLARMKALLKRT-G 123 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H S I G L +N G + L G+E+ ++ L T +TKE N L+ Sbjct: 124 HLNSSDTIALGQLEINTSKHLATFNGAPLTLKGREFDLLAYLVGNPGTIITKEQIFNRLW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E + +++V++ LRK+L + AG + T+ GY++ A DE Sbjct: 184 GFDSETSLSVVEVYMSNLRKELKH-AGSDLSLRTIRNAGYIVE--APDE 229 >gi|24375906|ref|NP_719949.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24350882|gb|AAN57393.1|AE015875_9 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 225 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 128/227 (56%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ILL+EDD A +I+ ++K + N+ G G+ ++D +ILD L + Sbjct: 1 MKILLVEDD---ATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRMLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS ++ ++++V+GL++G DDY++KPF EL+ R +++ Sbjct: 58 DGLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117 Query: 118 RSRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + + +V G L + L + V + GH + L KE+Q+++ L N +++ + Sbjct: 118 RGQSTPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLKYLMEHANQVISRTLLFE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQ 223 >gi|283787153|ref|YP_003367018.1| two-component system response regulator [Citrobacter rodentium ICC168] gi|282950607|emb|CBG90278.1| two-component system response regulator [Citrobacter rodentium ICC168] Length = 219 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD + I+ L F V + TD G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDALIGDGIKTGLSKMGFCVDWFTD-GRQGKEALHSAPYDAVILDLSLPGMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++LR R PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 60 RDILRDWREQGKREPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALMRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A S + G +++N + + G + L KE+ ++ELL K L +++ LY Sbjct: 120 SGQASSELCHGQVTLNPGNRVAALNGSALALKPKEFALLELLMRNKGRVLPRKLIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +E ++V + LR+KL G ++I TV G GY L E Sbjct: 180 NWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLSE 218 >gi|291614947|ref|YP_003525104.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291585059|gb|ADE12717.1| two component transcriptional regulator, winged helix family [Sideroxydans lithotrophicus ES-1] Length = 224 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ L+ + ++ + V V D + L FD +ILDLGL + G Sbjct: 1 MRILIAEDDEVLSDGLCHSMRQSGYAVDCVKDGHSANLILSGEQPFDLVILDLGLPKVDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F VLR+LR PV IL+ + D+V+GL GADDY+ KPF+ EL AR+RA++RR Sbjct: 61 FSVLRSLREKNRQVPVIILTARDAEGDRVKGLDLGADDYMIKPFSLPELEARVRALIRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G L+ + + + G + LT +E ++E L LR ++KE L LY Sbjct: 121 QCGVNPVYSCGTLTFDSVGRRASINGTTLELTTRELSVLEALMLRTGWVVSKEQLLERLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E I+V+I +LRKK+ A I T+ G GYV+ + Sbjct: 181 SYAEEASNNAIEVYIHRLRKKIEPAG---VTIRTIRGLGYVIND 221 >gi|297588714|ref|ZP_06947357.1| response regulator [Finegoldia magna ATCC 53516] gi|297574087|gb|EFH92808.1| response regulator [Finegoldia magna ATCC 53516] Length = 239 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 133/233 (57%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD+A+ + I LK FN + G + + L ++D + +DLGL DI G + Sbjct: 6 RILIIEDDRAVRNLISNTLKINRFNYDLAVNGSEALLLFTTNKYDIVFVDLGLPDIDGID 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +++ R +TP+ ++S S+ EDK+ L +GADD+++KPFN EEL+AR+R+ +RR Sbjct: 66 LIKKFREFS-TTPIIVISARSNDEDKIEALDAGADDFLTKPFNVEELLARVRSTIRRLNY 124 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +R GD+ ++ +++V V+G IHL EY ++ LLS LT + L Sbjct: 125 SENNRIDNNVTFENGDIKIDYPSRSVFVKGEEIHLMPIEYSLLCLLSKNIGKVLTHQYIL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKD 227 ++ + ++ + V++ LRKK+ + K YI+T G GY ++R N D Sbjct: 185 KTIWVNYLDSDLSSLRVYMTSLRKKIEKVSCEK-YIQTHIGVGYKMIRVNKSD 236 >gi|226228285|ref|YP_002762391.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091476|dbj|BAH39921.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 231 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL EDD L +I L+ F V GE + +DA+ILD+ + + G Sbjct: 1 MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR +++ P+ +L+ +++++++GL +GADDY++KPF+ EL AR+RA++RR Sbjct: 61 AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + GDL ++ + G + LT +E+ ++ L+ +++ H++D Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +P +IDV++ +LR+K+ + AG + + T G+G +L ++ Sbjct: 181 ENHDPNANLIDVYVSRLRRKV-DGAGRRPLLHTRRGQGVLLSDDG 224 >gi|291542560|emb|CBL15670.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 225 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED++AL +I LK ++V G EL ++D ++LDL L G Sbjct: 1 MRILVIEDERALCETIVRSLKRLAYSVDFCYDGNKANELLGIEKYDLVLLDLNLPGADGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR T V ILS + DKV GL +GA+DY++KPF+ EEL ARIR++ RR Sbjct: 61 TVLRTLRQTDRDTGVLILSARCEVADKVEGLDAGANDYLTKPFHLEELEARIRSLTRRRF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G ++ + A+ G + LT KE ++E L L + +++E L+H++D Sbjct: 121 TQNNVVLNCGKVAFDTKARVAVADGQELSLTRKEIGILEYLLLNQGRPVSQEELLDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I V I LRKKL AA G + I G GYV+ E Sbjct: 181 NSVDNFSNSIRVHISALRKKL-RAALGYDPIRNRIGEGYVMEE 222 >gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 231 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + +L E F V V D G D I D ++LDL L G E Sbjct: 3 RILIVEDEESFSDPLSYLLAKEGFEVEVVDNGIDAITEFDRVGADLVLLDLQLPGQSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A+ S PV +L+ S DKV GL+ GADDY++KP++ ELVAR+RA++RR +G Sbjct: 63 VCRQLR-ARSSAPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR-QG 120 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + L+ T G + ++++ V V G ++ L KE++++E+L LT+ ++ Sbjct: 121 EPEELMTTTVQAGPVRMDIERHVVSVNGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ Y+ TV G GY Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGY 222 >gi|147679020|ref|YP_001213235.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146275117|dbj|BAF60866.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 228 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + I L L+ E F V V GE+ + F D +ILD+ L + G+ V Sbjct: 6 ILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFANPDLVILDIMLPKMDGWAV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R ++TP+ +L+ D+V GL+ GADDY+ KPF+ ELVARI+A++RR+RG Sbjct: 66 CREIR-KTMATPIIMLTAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLRRARGG 124 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S ++ L V+ VEV G + L KE++++ L+ ++E L +++ Sbjct: 125 RDSPKVLSFPGLVVDYSGHRVEVDGREVALAPKEFELLWFLASHPGQLYSREQLLKNVWA 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +D I +LR+KL A K YI TVWGRGY Sbjct: 185 YDYLGDTRTVDTHIKRLREKL-EAGSEKRYIRTVWGRGY 222 >gi|323498483|ref|ZP_08103476.1| putative DNA-binding response regulator [Vibrio sinaloensis DSM 21326] gi|323316372|gb|EGA69390.1| putative DNA-binding response regulator [Vibrio sinaloensis DSM 21326] Length = 224 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD I L+ + V + G G+ + E+D +ILD L + G Sbjct: 1 MKLLIIEDDSTTREFIAKGLQQHGYTVDQAEDGNSGLMMALSGEYDLVILDRMLPYLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 ++L A++ PV ILS M S+ED+V GLQ+G+DDY+ KPF EL+AR+ I+ R+ Sbjct: 61 KILSAIKATIEQLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIINRTQ 120 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +G Q+ + L+V+L A V + L KE+Q+I+ +++ + Sbjct: 121 RQGRPQTSLSYDCLTVDLRAHKVTCHDIELQLQPKEFQLIQHFVEHHEQVVSRMRLFESI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV + LR+KL AG +N + TV G GYVLR Sbjct: 181 WSYHFDPKTNVIDVHVANLRRKLEE-AGCQNLLHTVRGAGYVLR 223 >gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] Length = 230 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 133/234 (56%), Gaps = 14/234 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 +RIL+++DD+A+ S+ +S +FN Y +L +DG+E DA+ILD+ + + Sbjct: 3 VRILVVDDDRAVRESLR---RSLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPRL 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 60 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119 Query: 118 RS----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R+ G +Q + + DL+++ + V G +I LT E+ ++E+L LT+ Sbjct: 120 RTVSDDSGDSQKMTFS-DLTLDPVTREVTRGGRQISLTRTEFSLLEMLIANPRRVLTRSR 178 Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V+I LR+K + A G I TV G GYVLRE Sbjct: 179 ILEEVW-GFDFPTSGNALEVYIGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 230 >gi|73540232|ref|YP_294752.1| two component transcriptional regulator [Ralstonia eutropha JMP134] gi|72117645|gb|AAZ59908.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 229 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL +PG Sbjct: 1 MRILIAEDDDVLADGLTRSLRHSGYAVDHVANGLEADSALSTQTFDLLILDLGLPRMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR PV IL+ ++++V+GL GADDY++KPF EL AR+RA+VRR Sbjct: 61 EVLKRLRARGAMLPVLILTAADGVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +L+ G L+ + + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGATLMRHGPLAFDQVGRIAYMNEQMLDLSAREVGLLEILLTRCGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ G I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEV---GGIRIATVRGLGYCL 218 >gi|228477550|ref|ZP_04062183.1| transcriptional activator protein CopR [Streptococcus salivarius SK126] gi|228250694|gb|EEK09892.1| transcriptional activator protein CopR [Streptococcus salivarius SK126] Length = 224 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 128/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++S+ L + V D G++G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GDEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 TVLRELREKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + GD+ VNL + V + L GKE+ ++ +N L K + L+ Sbjct: 121 KFDQNTLSFGDVRVNLATNSTFVGDKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + V +++V++ K+RKKL N ++T+ GY+L+ Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTDFATN-LQTLRSVGYILK 221 >gi|229541697|ref|ZP_04430757.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326117|gb|EEN91792.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 225 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 131/228 (57%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ +L S++ ML+ E F V GE+ + L + FD I+LD+ L ++ GF Sbjct: 1 MKLLIVEDNVSLLESMKRMLEDE-FEVETARDGEEALYLAQQNIFDIILLDVMLPEMDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR ++ TPV ++ S+ED+V GL+ G DDYI KPF EL ARIRA +RRS Sbjct: 60 SILKTLRKDRVETPVLFVTAKDSLEDRVTGLEIGGDDYIVKPFQAAELKARIRASLRRSG 119 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +L G + + K ++V G + LT +Y+++E L LT+E + + Sbjct: 120 NMTIDHTLRYRG-IELFGKEKEIKVDGQPLKLTITQYELLEYLIQNSGNILTREQIFDRV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + + I++V+I LRKKL K+ I+ V G GY+L+E K Sbjct: 179 WGFESDTTIAIVEVYIHHLRKKLEPFGYHKD-IQNVRGIGYLLKEPDK 225 >gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 229 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + + L+ ENF V GED +E K ++D ILD+ L + G+E Sbjct: 7 RILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDYDLFILDIMLPGMDGYE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + S PV LS + DKV GL+ G DDY+SKPF EL+AR+RA++RR G Sbjct: 67 LCRRLR-SFTSAPVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRALLRRGSG 125 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I ++++ DA T I LT +E++++ L +++E L + Sbjct: 126 QMETGHAITASGITLDEDAHTATGDSGPIDLTPREFELMAALMKHAGNVVSREDLLRDAW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E K +D I +LR K++ A + +ETV G GY R+ Sbjct: 186 GWEYLTETKTVDTHIKRLRDKIAAAGYDPSVVETVRGYGYRFRQ 229 >gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 239 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S + I+ +L + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVSEAPDEESIIIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|312793664|ref|YP_004026587.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180804|gb|ADQ40974.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 232 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 133/229 (58%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G+EV Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDGYEV 63 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 L+ +R + + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++RR Sbjct: 64 LKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + GD+ V+ +TV+ + L+ KE+++++LL K L ++ L Sbjct: 124 SLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFILQR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|296170765|ref|ZP_06852337.1| two component response regulator IrlR [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894580|gb|EFG74317.1| two component response regulator IrlR [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 222 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ L+ ++ LK+E F V G DG+ FD +ILD+ L G+ Sbjct: 1 MRVLLVEDEARLSATLARGLKAEGFVVVAVGTGVDGLREAVDNNFDVVILDIMLPGHSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + TPV +L+ D+ GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 EVLRRMRARNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G L ++ +V+ + I LT +E+ ++E L K+ +TK L +++D Sbjct: 121 PQRPAVLTAGSLLLDPARHSVQRGANPITLTPREFGVLEFLMRNKDMVVTKADILRNVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++V++ LR+K+ + G N IET+ G GY L Sbjct: 181 AHYHGPDNVVEVYVGYLRRKI-DIPFGTNTIETIRGVGYRL 220 >gi|170694195|ref|ZP_02885350.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170140935|gb|EDT09108.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 220 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 124/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ + +E L+ V G + + E++ ++LDLGL + G Sbjct: 1 MRVLLVEDDELIGSGVEEGLRDAGLTVDWAHDGREAMLALTTTEYELVVLDLGLPKLSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + TPV +++ ++ D+V GL +GADDY+ KPF+ EL+AR RA++RR+ Sbjct: 61 ELLDWLRGRRDDTPVLVMTARDTVADRVGGLTAGADDYLGKPFDLSELIARCRALLRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQ-MIELLSLRKNTTLTKEMFLNHLY 179 G + I DL V TV G R LT +E +IELL+ + T L++ +LY Sbjct: 121 GRSTETIQYRDLIVEPSTFTVTQGGLRQPLTSRECAVLIELLT-HQGTPLSRARIEENLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E E ++V I LRKKL G I+T+ G GYV+ Sbjct: 180 GWQEEVESNTVEVHISNLRKKL-----GPGIIKTIRGVGYVV 216 >gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp. Marseille] gi|151281437|gb|ABR89847.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 227 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED+ ++ L + V V + G DG L ++DAI+LD+ L G Sbjct: 1 MKILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDAIVLDIMLPGRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ALR K STPV +L+ ++D++ GLQ+GADDY+ KPF+ EL+AR++A+ RR R Sbjct: 61 EVLQALRRQK-STPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++L A+ R+ LT KE+ ++ L+ + L+K + + ++D Sbjct: 120 PQESTHIRIADLHIDLIARRAMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEMVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E +++V I +LR KL + K + T+ G GY+L E ++ Sbjct: 180 VNFESNTNVVEVAIKRLRAKLDEPSEVK-LLHTIRGMGYLLEERSE 224 >gi|309779544|ref|ZP_07674305.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|308921785|gb|EFP67421.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 225 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD L ++ L+ +N D + F+AI+LDLGL D G Sbjct: 4 ILLIEDDLPLGTALARALRQAGYNATWVRRLVDAQKWITTNTFEAIVLDLGLPDGEGHTF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR A PV I S ++ ++++GL SGADD++ KPF +EL+AR+RA++RR G Sbjct: 64 LEELRAAHSDVPVIIASARDALSERLKGLDSGADDFLVKPFPVDELIARLRAVLRRHAGQ 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G+L V K V +G I LT +EYQ++ L R + + +E ++ LY Sbjct: 124 STNQWNVGNLVVEPSQKRVTQEGQVIELTPREYQLLLELVRRAHRWVPRETLMDALYREG 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D ++V I LR+KL N I+T+ G GY++ N Sbjct: 184 DSVSANALEVVIHHLRRKLGN-----ETIQTIRGVGYMIGGN 220 >gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 246 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E ++ V G D +E Y D ++LD+ + + G Sbjct: 14 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGLT 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 74 AARRIRGTGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ GDL ++L + V G + LT E+ ++E+ LT+E Sbjct: 134 AAAVAGAADEGDVLAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFMAHPRQVLTREQ 193 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ + Sbjct: 194 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 246 >gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 233 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +IL+++DDK + + I + L++E T ED I+ + E FD IILD+ + ++ Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIQALQLLEEKDFDLIILDIMMPNMD 65 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 66 GIEACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S H +S++ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 125 FKKYNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVA 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 185 KIYEAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 231 >gi|126439551|ref|YP_001057860.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126219044|gb|ABN82550.1| DNA-binding response regulator [Burkholderia pseudomallei 668] Length = 247 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 222 >gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA [Mycobacterium intracellulare ATCC 13950] Length = 228 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 131/233 (56%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRIL+++DD+A+ S+ +S +FN Y +L DG+E + DA++LD+ + + Sbjct: 1 MRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGVEALELIASDRPDALVLDVMMPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 58 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 117 Query: 118 RSRGHAQSLIVTGDLS-VNLDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R++ ++ V S + LD T EV RI LT E+ ++E+L LT+ Sbjct: 118 RTKPEDEAESVAMKFSDLTLDPVTREVTRGERRISLTRTEFALLEMLIANPRRVLTRSRI 177 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 178 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGESRLIHTVRGVGYVLRETPP 228 >gi|228917720|ref|ZP_04081261.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841957|gb|EEM87063.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 222 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I L E + +G+ + ++D IILD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSSLTQEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R+ K+ TPV I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS + Sbjct: 61 CRQIRLVKM-TPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNCN 119 Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ I DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQNEIAFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 222 >gi|255532348|ref|YP_003092720.1| transcriptional regulator domain-containing protein [Pedobacter heparinus DSM 2366] gi|255345332|gb|ACU04658.1| transcriptional regulator domain protein [Pedobacter heparinus DSM 2366] Length = 224 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGE---DGIELCKFYEFDAIILDLGLTDI 57 M++L++ED+K LA+ +E LK Y+ DL DG+E +D I+LDLGL D Sbjct: 1 MKVLIVEDEKTLAYEMEDFLKKA---FYICDLAHNISDGLEKISANSYDFILLDLGLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L + IL+ ++ED++ GL GADDY+ KPF+ EL +R++AI R Sbjct: 58 DGLTLLPKAKKHNPDAAYIILTARGNLEDRIAGLDLGADDYLPKPFSLLELQSRMQAIAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + L+ GD ++L + + G +I L+ KE+ ++ L L N LT+ H Sbjct: 118 RKFNLKEELLPLGDFKLDLQKRLIFFNGQQIELSRKEFDILSYLFLHSNRVLTRMQLSEH 177 Query: 178 LYD--GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ D+ + ID I +RKKL NA N++ETV G GY +++ Sbjct: 178 IWGTFADDDYDSNYIDAHIKNIRKKL-NAWAATNFLETVRGVGYRIKK 224 >gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 10/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ EDD +A I L L E + + G + + L + D +ILD+ + + G+EV Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 +R +R + P+ LS +S DK+ GL GADDY++KPFN EL+AR+ A +RR R Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 HA S IV G L+++ + + V + RI LT KE+ ++ LL+ + E Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187 Query: 174 FLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + E + V I LRKKL + +I+TVWG GY + Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQ 237 >gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 228 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +IL+++DDK + + I + L++E T ED IE K E FD IILD+ + ++ Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIEALKLLEEKKFDLIILDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 61 GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 Query: 119 SRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +S++ GDL+VN D + V V+G + LT KE+ +++LL+ K L+ Sbjct: 120 FKKYNTHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVA 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 180 KIYEAVWKDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226 >gi|319793018|ref|YP_004154658.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315595481|gb|ADU36547.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 224 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +LA ++ L ++ F V V + ++ A++LDL L D G Sbjct: 1 MRILLVEDDTSLADAVCSYLLAKAFVVDVAPSLAEARGALLSVQYAAVLLDLHLGDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R + V +L+ + D++RGL +GADDY+ KP++ EL+AR+RA+ RR Sbjct: 61 SLLPQVRALREPPIVIVLTARDQVTDRIRGLDAGADDYLIKPYDPAELLARLRAVERRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G L ++L V G + LT KE+ ++ +++ R T+E + LY Sbjct: 121 ANTSPVLHFGTLEIDLAHDRVRKDGTPVVLTQKEWALLRVMATRPERIHTRENLADALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DE + ++VFI +LR+KL GK++I+T+ G GY L +A DE Sbjct: 181 FGDEADSNTLEVFISRLRRKL-----GKSHIQTLRGLGYRLSFSADDE 223 >gi|307730902|ref|YP_003908126.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585437|gb|ADN58835.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 280 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRIL+ EDD LA +++S + Y D ++G+E FD +ILDLGL + Sbjct: 1 MRILIAEDDSILADG---LVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 SGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +++ G LS + + + I L+ +E ++E+L R ++KE ++H Sbjct: 118 RGAGGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + +E I+V++ +LRKK+ + I TV G GY L Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218 >gi|302878154|ref|YP_003846718.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] gi|302580943|gb|ADL54954.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] Length = 220 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 125/227 (55%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRILL+EDD + ++ + LK ++V D +DG+ E ++LDLGL Sbjct: 1 MRILLVEDDAMIGAAVSVTLKDAAYSV---DWVKDGVTASSVLEQGEHQCVLLDLGLPKR 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLR LR+ + PV I++ +ED+++GL GADDY+ KPF+ EL+AR+RA++R Sbjct: 58 DGLDVLRRLRLGGNTMPVIIITARDGVEDRIKGLDFGADDYLVKPFDVNELLARLRAVIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G A L+ G ++++ + + + L+ +E+ ++ L LR LT+ Sbjct: 118 RQGGQAAPLLSNGRVTLDPASHQAQCDDTLVTLSAREFALLHALLLRPGAILTRAELEER 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y +E E +D I +RKKL G + I+ V G G+++ ++ Sbjct: 178 IYGWNEEVESNAVDFLIHGIRKKL-----GADAIKNVRGAGWMVEKS 219 >gi|46908593|ref|YP_014982.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47093002|ref|ZP_00230782.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|226224969|ref|YP_002759076.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254991991|ref|ZP_05274181.1| two-component response regulator [Listeria monocytogenes FSL J2-064] gi|46881865|gb|AAT05159.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47018656|gb|EAL09409.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|225877431|emb|CAS06145.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465285|gb|EGF36542.1| two-component response regulator [Listeria monocytogenes 1816] gi|328471342|gb|EGF42239.1| two-component response regulator [Listeria monocytogenes 220] gi|332312851|gb|EGJ25946.1| Two-component response regulator [Listeria monocytogenes str. Scott A] Length = 231 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q+ ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL A GG+N I+T+WG GY Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 227 >gi|301056576|ref|YP_003794787.1| putative DNA-binding response regulator [Bacillus anthracis CI] gi|300378745|gb|ADK07649.1| putative DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 225 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTQEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K+ TPV I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVKM-TPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNC 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+ I DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGHNVVVNPNVVDLYIGYIRKKLKCEKKDR-YIQTIHGRGYSMVE 225 >gi|300864987|ref|ZP_07109818.1| multi-component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300337022|emb|CBN54968.1| multi-component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 620 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 125/235 (53%), Gaps = 9/235 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD+ L+ ++ +L ++ + + G+ G+EL E+D I+LD+ + + G Sbjct: 1 MKILLVDDDRLLSATLAKVLGVNHYAIDLASDGQAGLELATAIEYDLILLDVQVPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + R LR P+ +L+ S D V G +GADDYISKP E L+ARIR ++RRS Sbjct: 61 SLCRQLRSQGYRKPILLLTANDSDADVVAGFDAGADDYISKPCATEVLLARIRTLLRRSQ 120 Query: 120 ----RGHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R AQ+L+ G+L ++LD+ V I LT EY ++EL + ++ Sbjct: 121 ALSPRDSAQNLLANTLTWGNLCLDLDSGRVTFDKQIISLTATEYNLLELFLRNPDRIFSR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ L+ D P + I I +RKKL + IETV+G GY L+ K Sbjct: 181 SAILDRLWGLEDAPTDRAIITHIKDVRKKLKAGGLSEEIIETVYGMGYRLKSQPK 235 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + + L V + E+ + D ++LD+ + I G E Sbjct: 499 KVLIVDDDVLMLARLSDFLTPWAIEVITLTEPQQFWEVLISTKPDLVVLDIEMPFINGLE 558 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R + + P+ +++ + E + +GADD+ISKP ELV R+ + + RS Sbjct: 559 LCQVVRQDIQWENLPILVVTAHTDPESLQKAFIAGADDFISKPVLGPELVTRVISRMERS 618 Query: 120 R 120 R Sbjct: 619 R 619 >gi|212709975|ref|ZP_03318103.1| hypothetical protein PROVALCAL_01026 [Providencia alcalifaciens DSM 30120] gi|212687384|gb|EEB46912.1| hypothetical protein PROVALCAL_01026 [Providencia alcalifaciens DSM 30120] Length = 225 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + +++ L F + G+ G + +DA++LDL L I G Sbjct: 6 MRILLIEDDRLIGDGLKVGLTQLGFTLDWFMDGKQGQQALFDAPYDAVVLDLSLPHIDGM 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 66 DILKFWRKQGRDEPVLILTARDALEQRVNGLQQGADDYLCKPFALAEVAARLQALIRRRS 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +V GD+ ++ A TV QG + L GKE ++ L L++ LY+ Sbjct: 126 GQLSPTLVHGDVEMDPLAMTVTYQGKPVQLKGKELALLSLFLHNPKKVLSRSAIEEKLYN 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V I LR+KL G +I+TV G GY L Sbjct: 186 WDEEVSSNSVEVHIHHLRRKL-----GSKFIQTVHGIGYRL 221 >gi|320664822|gb|EFX31957.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. LSU-61] Length = 227 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+T+ G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTLRGVGYML 221 >gi|303238774|ref|ZP_07325306.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302593653|gb|EFL63369.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 238 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 128/229 (55%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++E+D L+ + +LK ++ V + G+DGI+ +D I+LD+ L G Sbjct: 1 MRILVVENDIYLSKVLSQILKKNSYTVTCVNNGDDGIDFALTGIYDIILLDVVLPKTDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +I+TPV +LS S I KV GL SGADDY+ KPF+ +EL+AR+RA+ RR + Sbjct: 61 TVLQRLRKIRITTPVILLSARSEISAKVAGLDSGADDYLVKPFSLDELLARVRALGRR-K 119 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + +++V GD+ +N + + + + LT +E +++E L RK KE + L Sbjct: 120 GELFSNNILVYGDIELNTASLKLSTEQSEVALTCRECELLEFLIRRKGIISPKERIIEKL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++V+I LRKKL G I T G GY + KD Sbjct: 180 WGFDSSAGANHVEVYISFLRKKL-EYIGSNVVITTHRGAGYEINTTCKD 227 >gi|171319327|ref|ZP_02908439.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172065027|ref|YP_001815739.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171095472|gb|EDT40440.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171997269|gb|ACB68186.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 225 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L+ F++ + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 IV GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIHTVRGVGYVL 219 >gi|115360729|ref|YP_777866.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286057|gb|ABI91532.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 225 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L+ F++ + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 IV GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETERIVIGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFSVK-LIHTVRGVGYVL 219 >gi|262173228|ref|ZP_06040905.1| DNA-binding response regulator [Vibrio mimicus MB-451] gi|261890586|gb|EEY36573.1| DNA-binding response regulator [Vibrio mimicus MB-451] Length = 218 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S+++ L + + V + G K +F A+ILDL L D+ G Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGAGVASALKTEQFTALILDLTLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A + PV IL+ I D+V+GL GAD+YI KPF EEL+AR+R I+RRS Sbjct: 61 EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI G+L+++L + + + LT EY+++ L + ++KE+ L+ Sbjct: 121 GSAEELISVGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKKL + N I+ V G GY++ Sbjct: 181 WDEGSSDNAIEVHIHNLRKKLPD-----NLIKNVRGVGYMI 216 >gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158] gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158] Length = 286 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 123/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V T G G+ L + +DA+ILDL L + G E Sbjct: 53 RILIVEDDADIADVLSLHLRDERYEVVHTADGAQGLRLLEQGGWDALILDLMLPGVDGLE 112 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 113 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 172 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G LS++ A+ V G RI LT +E+ ++ + ++ Sbjct: 173 LARDSRIDAGTLDVAG-LSIDPIAREASVDGMRIDLTPREFDLLYFFARHPGKVFSRMDL 231 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 232 LNAVWGYQHEGYEHTVNTHINRLRAKIETDPAEPARILTVWGRGYKL 278 >gi|75760053|ref|ZP_00740117.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900246|ref|YP_002448657.1| DNA-binding response regulator [Bacillus cereus G9842] gi|74492441|gb|EAO55593.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218545333|gb|ACK97727.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 225 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + + +G+ + ++D I+LD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIVLDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K +TP+ I++ S ED V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTDNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 225 >gi|330809365|ref|YP_004353827.1| two-component regulator system, response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377473|gb|AEA68823.1| Putative two-component regulator system, response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 219 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 121/220 (55%), Gaps = 7/220 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+ED L ++ + + V +V +L + + +D I+LDL L D G Sbjct: 1 MRVLLVEDSPRLGDAVREQIADDGHAVDWVQNLAQARSSVST-TAYDLILLDLMLPDGRG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + LR R A +T V IL+ I D++ GL +GADDY+ KPF+ EL AR+ A+ RR Sbjct: 60 LDFLRQRRSAGDATAVIILTAQDQISDRIAGLNAGADDYLVKPFDLFELSARVAAVARRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ I G+L V++ A+T++ G + LT +E+ ++E R L+K + LY Sbjct: 120 SGNPNPQIRLGELHVDMTARTLQRAGMAVDLTAREWALLEAFIQRPGALLSKGQLEDRLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E E I+V+I +LRKKL G++ IETV G GY Sbjct: 180 AFGAEIESNTIEVYISRLRKKL-----GRDLIETVRGMGY 214 >gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 126/222 (56%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G +E D ++LDL L + G E Sbjct: 3 RVLVVEDEESYSDALSYMLRKEGFEVAVAPTGTVALETFDRTGADLVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR K + PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRTLR-QKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRR-RG 120 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ G + ++++ V V+G + L KE++++E+L LT+ ++ Sbjct: 121 EDEVVLPAALEAGPVRMDVERHVVTVRGDNVQLPLKEFELLEVLLRNAGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G YI TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEEDPGSPRYIVTVRGLGY 222 >gi|212633146|ref|YP_002309671.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212554630|gb|ACJ27084.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 227 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLI+DD L+ + +L+ E F + + G+ G++L FD I+LD+ L + GFE Sbjct: 3 RILLIDDDLGLSELLAQLLELEGFELTLAHDGQVGLDLAVEQSFDLILLDVMLPKLNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLRALR K TPV +L+ D+V GL+ GADDY+ KPFN ELVARIRAI+RR+ Sbjct: 63 VLRALRTKK-QTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAIIRRTNV 121 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H Q++ GDL ++ + V Q I LTG E+ ++ L +KE+ Sbjct: 122 HTDDKTQAVQTFGDLKLDPARQEVHCQDQLIVLTGTEFSLLFELVHHAGELASKEVLSEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + P + +D+ + LRKK+ G+ ++T+ G+GY+ Sbjct: 182 VLGKKLMPFDRSLDMHLSNLRKKMPERIDGRPRVKTIRGKGYI 224 >gi|289625552|ref|ZP_06458506.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650888|ref|ZP_06482231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298487477|ref|ZP_07005521.1| DNA-binding response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157992|gb|EFH99068.1| DNA-binding response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866911|gb|EGH01620.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 227 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L + V D G DG+ ++D I LD L ++ G Sbjct: 3 RILAIEDDAITAKEIVTELSNHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 ++ LR I+TP+ ++S +S ++++VRGL++G DDY+ KPF +E+ AR+ ++RRS Sbjct: 63 IVTHLRAQGIATPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ DL +NL ++ G + L E++++E L +T+ M ++ Sbjct: 123 VSAGKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ + G I+TV G GYV+ E Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225 >gi|254820274|ref|ZP_05225275.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium intracellulare ATCC 13950] Length = 226 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D+ + ++ + L + V G + ++ D +ILDLGL DI G + Sbjct: 3 RVLVIDDEPQILRALRINLSVRGYEVVTASSGAGALRAAAEHKPDVVILDLGLPDISGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR ++ PV +LS + DKV L +GADDY++KPF +E +AR+RA VRR+ Sbjct: 63 VLAGLR-GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q +I T +V+L AK V G +HLT E+ M+E+L + + +E L + Sbjct: 122 ASEVEQPVIETESFTVDLAAKKVSKNGGEVHLTPTEWGMLEVLVRNRGKLVGREELLKEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + V++ +LR+KL + ++ T G GY Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLEDDPSNPKHLLTESGMGY 222 >gi|229032183|ref|ZP_04188158.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1271] gi|228729140|gb|EEL80141.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1271] Length = 230 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK + Sbjct: 124 SATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYSL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 267 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 14/225 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD A+A + L E + V G G L + D +ILDLGL D+ G + Sbjct: 45 KVLLVEDDPAIAEPLARALGREGYEVSAQTTG--GAALQQVGGCDIVILDLGLPDMDGLD 102 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R I+ P+ IL+ + D V GL SGADDY++KPF EL+AR+RA++RR+ G Sbjct: 103 VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 162 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174 VT D + VEV HR + LT KE+ ++ +L + +++E Sbjct: 163 E-----VTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQV 217 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ K +D+ + LR+KL + A YI TV G G+ Sbjct: 218 MREVWGSDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGF 262 >gi|158334669|ref|YP_001515841.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304910|gb|ABW26527.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 225 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 116/219 (52%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD LA L+ + V V GE G E+ I+LD L + G Sbjct: 1 MRLLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + P+ +++ + DKV GL +GADDY+ KP + EL+ARIRA++RR Sbjct: 61 GLCQRLRAHGYTIPILMMTARDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ GDL ++ V H + LT E+ ++EL L++++ ++HL+D Sbjct: 121 ATPSPLLYWGDLCLHPLNHEVTYASHPVKLTPTEFSLLELFLRSGLRVLSRKIIISHLWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D P + + I LR+KL+ A K +IET+ G GY Sbjct: 181 LEDPPGEETVKAHIKGLRQKLTEAGAPKTFIETIRGVGY 219 >gi|119386003|ref|YP_917058.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376598|gb|ABL71362.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 219 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 118/222 (53%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD L ++ + + +V +VT L + +D I+LDL L D G Sbjct: 1 MRILLIEDDTVLGAAVRDQIAAGGQSVDWVTRLDAA-GDAMAGAGYDLILLDLMLPDGRG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 LR+LR TPV IL+ + I D++ GL +GADDY+ KPF+ EL ARI ++ RR Sbjct: 60 ITFLRSLRAGGNVTPVIILTALDQISDRIEGLNAGADDYLVKPFDLAELSARIGSVARRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ +IV G L+V+L +++ G + LT +E+ + E R L+K LY Sbjct: 120 SGNPNPIIVHGALAVDLALRSIRRDGRPVQLTAREWALFEAFLTRPGQLLSKAQLEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V + +LRKKL G IET G GY L Sbjct: 180 AFDTEVESNTIEVHVSRLRKKL-----GAAVIETERGLGYRL 216 >gi|46201698|ref|ZP_00208213.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 225 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 118/226 (52%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ LA I LKS F V D I + + A ILDLGL D G Sbjct: 1 MRILLVEDNDRLAEFISGALKSAGFVPDVFGNKADAIAAFESATYQAAILDLGLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++RA R P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+RAI+RR Sbjct: 61 DIIRAQRAKSAPCPMMVLTARDGVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +L+ + + V V G I + +E +M+E L R ++K LY Sbjct: 121 AALSVELSLSNLTFDTTGREVRVDGTLISMPRREMEMLEHLLRRAGKVVSKRSLEEGLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D+ ++V + +LRK+L G + + T+ G GY+L + A Sbjct: 181 FDDDVTPNSVEVLVSRLRKRLQQ-TGARLTVHTLRGIGYMLADGAP 225 >gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 247 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 132/238 (55%), Gaps = 20/238 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ +E L E + V + G+ +L FD IILDL L + G + Sbjct: 3 KVLVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLASEKNFDFIILDLMLPSMDGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR K++TP+ +L+ +K+ GL+ GADDY++KPF+ E+VAR++AI+RRSR Sbjct: 63 VCKQLRQDKVNTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVVARMKAILRRSRD 122 Query: 121 -------------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161 G +S+I GD+++N +V G + +T KE++++ L Sbjct: 123 YGKVASDQEDKKEADQDPAGEEESVIQVGDITINKSDFSVTAHGQAVDMTKKEFELLTYL 182 Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + R + +++E+ L+ ++D +++DV I LR+K+ YI TV G GY Sbjct: 183 AERVDRIVSREILLSKIWDFDYSVGSRLVDVHISHLREKIEKDPKNPEYIITVRGFGY 240 >gi|311897138|dbj|BAJ29546.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 128/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +++ L++E F V + GE+G+ L +++D I+LD+ L + G+ Sbjct: 1 MRVLVVEDERRLAATLQRGLRAEGFAVDLAHDGEEGLWLATEHDYDVIVLDIMLPRLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A TP+ +L+ D+ L +GADD++SKPF+ LVAR+RA+VRR+ Sbjct: 61 RVCSRLRAAGDDTPILMLTAKDGELDEAEALDTGADDFLSKPFSYVVLVARLRALVRRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL+++ +T G + LT +E+ ++E L+ ++K L ++D Sbjct: 121 RRLPQTLEFGDLAIDPARRTCTRAGVEVRLTTREFAVLECLARAAGGVVSKREILESVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I++V I LR+K+ +A + + TV G GY L Sbjct: 181 AAFDGDPNIVEVHISALRRKI-DAPFARTSVGTVRGAGYRL 220 >gi|229049779|ref|ZP_04194336.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229112534|ref|ZP_04242071.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228670914|gb|EEL26221.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228722692|gb|EEL74080.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 220 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +I+++++ A I L E + + +G+ + ++D IILD IPG E+ R Sbjct: 1 MIKNERSSAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSIPGPEICR 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 +R+ K +TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS + Q Sbjct: 61 QIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCNQQ 119 Query: 125 ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 KEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMILNQVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 NIVVNPNVVDLYIGYVRKKLK-CEKKERYIQTIHGRGYSMIE 220 >gi|222080841|ref|YP_002540204.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221725520|gb|ACM28609.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 224 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+KAL+ + +L+ + V G FD +ILDL L ++ G Sbjct: 1 MRILLVEDNKALSEGLFAILRGTGYAVDAVGDGASANAAAAAETFDLVILDLNLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R + V IL+ + E+KVRGL GADDY+ KPF+ E AR+R ++RR Sbjct: 61 DVLRAMRARQNKAAVLILTARGTQEEKVRGLDLGADDYMIKPFDISEFEARVRVLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G SL+ G++S++L+++T G I + +E ++E L +R + KE + L Sbjct: 121 GLRASLVAYGNVSLDLNSRTFSANGVPIDIPARELGLLETLFMRAGRVVAKEAIIQSLAA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ I+ ++ +LRK+L A G + T G GY L Sbjct: 181 FDDDLSANAIEQYVSRLRKRL--APHGLT-VRTARGIGYYL 218 >gi|222098001|ref|YP_002532058.1| response regulator [Bacillus cereus Q1] gi|228960804|ref|ZP_04122441.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pakistani str. T13001] gi|229147097|ref|ZP_04275456.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST24] gi|229186790|ref|ZP_04313946.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BGSC 6E1] gi|229198686|ref|ZP_04325386.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1293] gi|221242059|gb|ACM14769.1| response regulator [Bacillus cereus Q1] gi|228584795|gb|EEK42913.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1293] gi|228596683|gb|EEK54347.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BGSC 6E1] gi|228636346|gb|EEK92817.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST24] gi|228798889|gb|EEM45866.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pakistani str. T13001] Length = 230 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 224 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ LA I+L L SE + V V G G+ L + + D ILD L + G E+ Sbjct: 5 ILLVEDEVKLARFIQLELDSEGYRVTVAHDGMSGLSLAREAQPDLAILDWMLPGLTGIEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV +L+ + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++ Sbjct: 65 CRRLRATGNKIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHLRRTQEV 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ DLS+N + V I LT KE+ ++E L T++ L ++ Sbjct: 125 DEDILQFEDLSLNRRTREVRRGQRSIELTAKEFDLLEYLLSNPRQVYTRDQILEKVWGYD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL G K I TV G GY LRE Sbjct: 185 FMGDSNIIEVYVRYLRLKLEE-QGEKRLIHTVRGVGYALRE 224 >gi|170700827|ref|ZP_02891817.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170134275|gb|EDT02613.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 225 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L+ F++ + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 IV GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIHTVRGVGYVL 219 >gi|315647320|ref|ZP_07900433.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277522|gb|EFU40851.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 235 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 8/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ ++ + L+ + F+ ++ + DG+ + + D IILDL L D G EV Sbjct: 7 ILIIEDEQDISRIVNDYLRVQGFSAFIAENASDGLREVRNRQPDFIILDLTLPDADGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R LR + P+ ILS SS DKV L GADDY++KPF+ ELVAR++A +RR Sbjct: 67 CRKLRTL-TAAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRLADP 125 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + Q L+ LS++ A+ V + GH I L+ KE+ ++ L+ N TK L+ Sbjct: 126 KFKATTQQLLRFDSLSIDKTARKV-MAGHLEISLSAKEFDLLYFLASHPNQVFTKSQLLD 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E I V+I +LR+KL + +YI TVWG GY Sbjct: 185 QVWGYSAFVEDNTITVYIRRLREKLERSEIKHSYITTVWGVGY 227 >gi|316936295|ref|YP_004111277.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315604009|gb|ADU46544.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 221 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD +A + L + + GE+ ++ AIILDLGL + G Sbjct: 1 MRVLVVEDDSRIASELGRGLGEAGYLAEIVGDGEEAWFRGDTEDYAAIILDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R TPV IL+ S ++V G+ +GADDY+ KPF EEL+AR+R+IVRRS Sbjct: 61 TILKRWRDNGRLTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S++ GD++++ V V+G + L+ EY++ L L + +++ ++Y Sbjct: 121 GHASSVVSIGDVTLDERQMQVSVRGKPVALSPLEYRLASYLVLHRGRVVSQFELAENIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + I+V + ++R+K+ G + IET G GY++ Sbjct: 181 QDDAHDSNAIEVLVGRVRRKI-----GVDLIETRRGFGYIV 216 >gi|188579674|ref|YP_001923119.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179343172|gb|ACB78584.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 232 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + V G DG L + ++D +I+D L + G Sbjct: 1 MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++R+LR +I+TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR + RR Sbjct: 61 SLVRSLREQEIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRA 120 Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G +++ GDL ++ + V G I L +E++++E L +T+ M L Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 H++D +P+ +IDV + +LR K+ I TV G GYV+R + Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRSKIDRGF-EHPMIHTVRGAGYVIRPD 227 >gi|163761469|ref|ZP_02168542.1| two component transcriptional regulator, winged helix family protein [Hoeflea phototrophica DFL-43] gi|162281313|gb|EDQ31611.1| two component transcriptional regulator, winged helix family protein [Hoeflea phototrophica DFL-43] Length = 226 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD + + L++ + V GE+ L + A ILDLGL + G Sbjct: 4 MRILLAEDDDRIRQDVSRALEAAGYVVDSEANGEEAWFLGDTETYAAAILDLGLPGMDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A PV +L+ + ++V G+ SGADDY+ KPF EE++AR+RAI+RRS Sbjct: 64 AVLKRWRAAGRDFPVLVLTARGTWSERVEGIDSGADDYLPKPFRMEEMLARLRAIIRRSG 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ GD+ ++ + V G + L+ +EY+++ L L K + ++ HL Sbjct: 124 GLANPVVSVGDIELDTRQMRLSVAGVPVSLSPQEYRLVAYLMLNKGRVVPQQELSEHLQS 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E ++V + ++R+KL N I T G GY++ E Sbjct: 184 VHFERESNAVEVLVGRVRRKLP-----ANLITTRRGFGYIVEEQ 222 >gi|325660888|ref|ZP_08149516.1| hypothetical protein HMPREF0490_00248 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472962|gb|EGC76172.1| hypothetical protein HMPREF0490_00248 [Lachnospiraceae bacterium 4_1_37FAA] Length = 228 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +L ++ + L S+ + V G DG+ +D +ILD L ++ G Sbjct: 1 MRILLVEDDISLCKALMIHLNSQGYETDVCHNGTDGLSYALQNTYDVMILDRMLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L A+R I TPV + + M S++DK+ GL GADDY++KPF+ EEL+ARIRA+ RR Sbjct: 61 TLLSAIRRKNIFTPVILATAMDSLQDKISGLDCGADDYLTKPFDAEELLARIRALARRPA 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S I++ GDL + + + + L+ KE +IE L K L + + L++++ Sbjct: 121 LFKESPILSYGDLCFDPEKLELSTNEKTLSLSKKEGSLIEYLIKNKEQNLRRSLILSYVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E +D +I LR++L + I+T+ G GY L E Sbjct: 181 GADAEVEEGNLDNYIYFLRRRL-RVLKSRVQIKTIHGVGYRLEE 223 >gi|91978862|ref|YP_571521.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91685318|gb|ABE41620.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 221 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+ EDD +A + L + GE+ ++ AIILDLGL + G Sbjct: 1 MRVLVAEDDSRIASDLARGLTEAGYIAECVADGEEAWFRGDTEDYAAIILDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R TPV IL+ S ++V G+ +GADDY+ KPF EEL+AR+R+IVRRS Sbjct: 61 TILKRWREGGRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S++ GD++++ V V+G L+ EY++ L L + +++ +Y Sbjct: 121 GHASSVVTIGDVTLDERQMQVTVRGQPAPLSPLEYRLASYLVLHRGRVVSQFELSESIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D + I+V + ++RKKL G IET G GY++ +++ Sbjct: 181 QDDAHDSNAIEVLVGRVRKKL-----GPELIETRRGFGYIVAGDSR 221 >gi|323527265|ref|YP_004229418.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384267|gb|ADX56358.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 267 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRIL+ EDD LA +++S + Y D ++G+E FD +ILDLGL + Sbjct: 1 MRILIAEDDSILADG---LVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 SGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +++ G LS + + + I L+ +E ++E+L R ++KE ++H Sbjct: 118 RGAGGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + +E I+V++ +LRKK+ + I TV G GY L Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218 >gi|262045124|ref|ZP_06018153.1| transcriptional activator protein Irlr [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037516|gb|EEW38758.1| transcriptional activator protein Irlr [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 232 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED+K + L F V + D G +G L ++D +ILD+ L D+ G+ Sbjct: 6 VKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDVMLPDVNGW 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 66 DIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DLSV+L ++ V RI LT KE+ ++E + L + + + ++ Sbjct: 126 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 186 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 226 >gi|259047806|ref|ZP_05738207.1| response regulator VanR [Granulicatella adiacens ATCC 49175] gi|259035483|gb|EEW36738.1| response regulator VanR [Granulicatella adiacens ATCC 49175] Length = 240 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 M+IL+++DD+ + + + LK+E++ + G+ +E K Y + D IILD+ + + G Sbjct: 11 MKILVVDDDREIVELLTIYLKNESYEIVKAYDGKQALEKLKMYPDIDMIILDIMMPRLDG 70 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V+ +R P+ +LS S+ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 71 ISVVHEVRKENAQLPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRRS 130 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G A I G L++ ++ V G I LT E+ ++ LL+ N + + Sbjct: 131 TITQEGPANEEITIGPLTIKKESHQVTTSDGKEIQLTVLEFGILFLLASHPNRVFSADEI 190 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K++ A GG+ IETVWG GY Sbjct: 191 FETVWQQESIVSTKTVMVHVSHLRDKIAEATGGEKVIETVWGVGY 235 >gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 132/229 (57%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K +A IEL LK E ++VYV G++G++ + D I+LD+ L I G E Sbjct: 5 KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGINGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +++ I D+V GL SGADDY++KPF EEL+ARIRA +R+S+ Sbjct: 65 ICRKIRQHS-NVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ DL+++ + V+ I LT +EY ++E L K LT++ L +++ Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++DV+I LR K+ + K I TV G GY E ++ Sbjct: 184 GYSYMGDTNVVDVYIRYLRSKVDDGFKTK-LIHTVRGVGYKCEERENED 231 >gi|291297399|ref|YP_003508797.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290472358|gb|ADD29777.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 218 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 129/222 (58%), Gaps = 11/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MR+LL+ED L ++ L + F V DL ED L + + +D ++LDLGL D Sbjct: 1 MRLLLVEDHTGLGRLLQDTLSGQGFAV---DLAEDMASADGLLQSFPYDLVVLDLGLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E+L++LR PV IL+ + D+V+GL++GADDY+ KPF+ EELVARIRA++R Sbjct: 58 DGIELLQSLRARGEKMPVLILTARDGLADRVKGLEAGADDYLVKPFHPEELVARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG + G L ++++ K G +HL+G+EY ++E L+L ++E + Sbjct: 118 RARGEPTNRFKVGRLELDMELKRAWWDGQSVHLSGREYALLEFLALHAEGYFSREALMEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ G + + +D ++ LR+KLS A IETV GY Sbjct: 178 VWPGEAAIDPRTVDTYVRYLRRKLSPEA-----IETVRNLGY 214 >gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 236 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V+ G ++ + DAIILD+ + + GF Sbjct: 11 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGFG 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 +LR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RRS R Sbjct: 71 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 130 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 GH + S + D+ ++ D V G + L+ E+ ++ + T L+K L+H Sbjct: 131 GHEEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 190 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 191 VWRYDFGGDVNVVESYVSYLRRKIDT--GDKRLLHTLRGVGYVLRE 234 >gi|291535462|emb|CBL08574.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 234 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F+ + + GE+ ++ + Y + I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYSPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK + P+ +LS I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 66 VCREVR-AKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124 Query: 122 -----HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A L + DL VNL +V + + I + KE +++ L+ N T+E Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+H++ + + +DV + +LR+K+ + + TVWG GY Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDNDSWS--LSTVWGIGY 227 >gi|227534396|ref|ZP_03964445.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188013|gb|EEI68080.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 231 Score = 131 bits (330), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 133/230 (57%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+IEDD L SI +++ F L G DG+ L + FDAIILD+ L ++ GF Sbjct: 6 RILVIEDDPDLNESITDFIRA--FADPEAALNGADGLYLAEEGIFDAIILDIMLPELNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +I TPV IL+ ++ DK+ G + G DDY++KPF++EEL+ R++A+++R Sbjct: 64 DVLKKLRAKQIKTPVLILTAKDALTDKLHGFELGGDDYLTKPFHREELIMRLKALLKRI- 122 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GH + G V++ + V + + L GKE+ ++ L + T +TK+ + L Sbjct: 123 GHFFDDDGLTAGPFVVHVTSHEVLINDQPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + E V +++V++ LRKKL +++I+T+ GY+ +E E Sbjct: 183 WGFDSETAVSVVEVYMSNLRKKLK-PLKVEHWIKTIRNVGYIFQEPEGSE 231 >gi|330818567|ref|YP_004362272.1| DNA-binding response regulator [Burkholderia gladioli BSR3] gi|327370960|gb|AEA62316.1| DNA-binding response regulator [Burkholderia gladioli BSR3] Length = 248 Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L IEDD+ A+ I LK F V G DG+ E+D I LD L + G Sbjct: 26 RVLTIEDDEITANEIVGELKDRGFAVEWVANGRDGMARALTDEYDVITLDRMLPGVDGLT 85 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 ++ +R + TPV +LS + ++++VRGL++G DDY++KPF+ EE+ AR+ ++RRSR Sbjct: 86 IVTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSRS 145 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ + G L+++L + G I L EY+++E + T+T+ M + Sbjct: 146 APAQSETSLTVGPLALDLIGRKASRDGVEIALLPTEYRVLEYMMRNAGQTITRTMLFEAV 205 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P +IDV + +LRKK+ + I TV G GY+L Sbjct: 206 WGYHFDPGTNLIDVHMGRLRKKI-DPPELAPMIRTVRGAGYIL 247 >gi|262164591|ref|ZP_06032329.1| DNA-binding response regulator [Vibrio mimicus VM223] gi|262026971|gb|EEY45638.1| DNA-binding response regulator [Vibrio mimicus VM223] Length = 236 Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S+++ L + + V + G K +F A+ILDL L D+ G Sbjct: 19 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGAGVASALKTEQFTALILDLTLPDMDGL 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A + PV IL+ I D+V+GL GAD+YI KPF EEL+AR+R I+RRS Sbjct: 79 EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 138 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI G+L+++L + + + LT EY+++ L + ++KE+ L+ Sbjct: 139 GSAEELISVGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 198 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKKL + N I+ V G GY++ Sbjct: 199 WDEGSSDNAIEVHIHNLRKKLPD-----NLIKNVRGVGYMI 234 >gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 225 Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D++ ++L L+ E F V GE+G++ + +D +ILD+ L + GF Sbjct: 3 RLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ D++ G++ GADDY++KPFN EL+ARIRA++RR+ Sbjct: 63 VCREIRTFS-NIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I G+L +++ + V +G RI LT KE++++ LL+ TK+ L+ + Sbjct: 122 PYTKKKDEIKRGELYISIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + V + KLR+K+ + YI T WG GY ++ Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225 >gi|328545642|ref|YP_004305751.1| Two component transcriptional regulator, winged helix family [polymorphum gilvum SL003B-26A1] gi|326415382|gb|ADZ72445.1| Two component transcriptional regulator, winged helix family [Polymorphum gilvum SL003B-26A1] Length = 219 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 119/224 (53%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57 MRILLIEDD L ++ + ++ +V +VT D D I + D I+LDL L D Sbjct: 1 MRILLIEDDTTLGAAVRDQIAADGQSVDWVTRLDAARDAIGSTSY---DLILLDLMLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L+ LR TPV IL+ + + D++ GL +GADDY+ KPF+ EL ARI ++ R Sbjct: 58 RGITFLKGLRARGDVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G+ ++ G L ++L A++V G + LT +E+ + E R L+K Sbjct: 118 RYSGNPNPILTHGALDIDLAARSVHRDGRPVPLTAREWALFEAFLARPGQLLSKAQLEEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY E E I+V + +LRKKL G + IET G GY L Sbjct: 178 LYAFDAEVESNTIEVHVSRLRKKL-----GTSVIETERGMGYRL 216 >gi|186471004|ref|YP_001862322.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184197313|gb|ACC75276.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 220 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ + +E L V G+ + +D +ILDLGL + G Sbjct: 1 MRVLLVEDDRLIGSGVEDGLIEAGMTVDWACDGKHAQLALETTPYDLVILDLGLPRVSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R + TPV +++ ++ D+V GL +GADDY+ KPF+ ELVAR RA+VRRS+ Sbjct: 61 ELLDWIRKRRDHTPVLVMTARDTVADRVSGLNAGADDYLGKPFDLTELVARCRALVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I GDL V+ + TV RI L+ +E ++ L + L++ + LY Sbjct: 121 GRSTDTIEYGDLLVDPERLTVMRGSERIALSSRECALLVELLANQGRPLSRARLQDSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E E I+V I LRKKL G I T+ G GYV+ Sbjct: 181 WNEEIESNAIEVHISNLRKKL-----GAQLIRTIRGVGYVV 216 >gi|154245480|ref|YP_001416438.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159565|gb|ABS66781.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 223 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA + +L+ +N+ V V GE+ +D +ILDL L I G Sbjct: 1 MRLLLVEDNLELAGWLAKILRQDNYVVDVFHDGEEADHALAVAAYDLVILDLTLPKINGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR +R K + PV IL+ +S++ +V GL GADDY++KPF+ EL ARIR +RRS Sbjct: 61 QLLRRIRSRKDTVPVIILTANASLDGRVAGLDEGADDYLAKPFDIAELEARIRVQLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I G L+ + + + + G + LT +E+ ++E+L ++ T++K ++ Sbjct: 121 RRPDPVISCGALAFDTNTRLFALSGTPLALTPREHAVLEMLLMKSGQTVSKAQLSQSIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + I++++ ++RKKL G I T+ G GY+L+ +A Sbjct: 181 LDDLADPSAIEIYVHRVRKKLE---GSDVRIVTLRGLGYLLQHDA 222 >gi|330821407|ref|YP_004350269.1| two component transcriptional regulator, winged helix family [Burkholderia gladioli BSR3] gi|327373402|gb|AEA64757.1| two component transcriptional regulator, winged helix family [Burkholderia gladioli BSR3] Length = 226 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 124/221 (56%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ +LA S+ L + F V GE L + ++ +ILDLGL + G Sbjct: 1 MRVLLVEDNPSLAQSLTDALAAARFAVDHMADGEAADHLLRTQDYALVILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV IL+ S+ED+VRGL GADDY++KPF EL AR RA++RRS Sbjct: 61 EVLRRLRARRNAVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH Q+ + G L + + G + LT +E ++E+L LR + KE ++ Sbjct: 121 GHEQTRVACGPLEFDSVDGGFRLAGEPLALTPRERAVLEVLILRNGRAINKEALSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LR+KL G I T+ G GY+L Sbjct: 181 IDESVNADAIEIYVYRLRRKLE---GRGVAIVTLRGLGYLL 218 >gi|295677593|ref|YP_003606117.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295437436|gb|ADG16606.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 265 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRIL+ EDD LA +++S + Y D + G+E FD +ILDLGL + Sbjct: 1 MRILIAEDDSILADG---LVRSLRQSAYAVDHVKSGVEADTALSMQTFDLLILDLGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 SGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +++ G LS + + V I L+ +E ++E+L R ++KE ++H Sbjct: 118 RGAGGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + +E I+V++ +LRKK+ + I TV G GY L Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218 >gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 228 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +IL+++DDK + + I + L++E T ED +E K E FD IILD+ + ++ Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAMEALKLLEEKEFDLIILDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 61 GIEACMKIREDR-NIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 Query: 119 SR------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + H +S++ GDL+VN D + V V+G LT KE+ ++ELL K L+ Sbjct: 120 FKKYNTPIDHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLVRNKGIVLSVA 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 180 KIYEAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGVGY 226 >gi|229152733|ref|ZP_04280917.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1550] gi|228630711|gb|EEK87356.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1550] Length = 230 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|207738979|ref|YP_002257372.1| response regulator protein for cobalt zinc cadmium resistance [Ralstonia solanacearum IPO1609] gi|300697058|ref|YP_003747719.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czcCBA [Ralstonia solanacearum CFBP2957] gi|206592350|emb|CAQ59256.1| response regulator protein for cobalt zinc cadmium resistance [Ralstonia solanacearum IPO1609] gi|299073782|emb|CBJ53303.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czcCBA [Ralstonia solanacearum CFBP2957] Length = 224 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L++ED+ + +LK + +V DL G DG+ +++D I+LD+ L + Sbjct: 1 MRLLIVEDEPKAG---DYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++V+R LR K +TPV L+ + D+++GL+ GADDY+ KPF ELVAR+R I+R Sbjct: 58 DGWQVIRELRRRK-ATPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ DLS++ + V G RI LT KEY ++ LL+ R L++ + + Sbjct: 117 RGPMRESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + ++DV I +LR K+ + K I T+ G GYVL A+ Sbjct: 177 VWDVNFDSNTNVVDVAIRRLRAKVDDPFEHK-LIHTLRGMGYVLDTVAR 224 >gi|729183|sp|Q02540|COPR_PSESM RecName: Full=Transcriptional activator protein CopR gi|151181|gb|AAA25803.1| transcriptional activator [Pseudomonas syringae] Length = 227 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 4/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L+ FNV G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 EV+R LR A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR S Sbjct: 61 EVIRRLRTAGQPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ + GDL V+L + G RI LT KE+ ++ELL R+ L+K + + ++ Sbjct: 121 SLQVQTSLQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D + + +I+V I +LR K+ + K + T G GY+L A+DE Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFEVK-LLHTCRGMGYML--EAQDE 226 >gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 228 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +IL+++DDK + + I + L++E T ED I+ + E FD IILD+ + ++ Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIQALQLLEEKDFDLIILDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 61 GIEACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S H +S++ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 120 FKKYNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVA 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 180 KIYEAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226 >gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 226 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ + + I + L++E F G+ L + E D IILD+ + + G E Sbjct: 4 RILIMDDDEQIRNLIAIYLENEGFEALKVSNAVSGLALLEEQEVDLIILDIMMPQMNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R K + P+ +LS S DK+ GL +GADDY++KPFN EL+AR+++ +RR + Sbjct: 64 AAFKIREEK-NMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + Q +I GDL +N + V V+G I LT KE+ ++ELL+ K T ++ Sbjct: 123 YNQRAEHEIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLARHKGTVMSMGKIYEA 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R+K+ + YI+T+WG GY Sbjct: 183 VWQADALKSDSTVMVHITKIREKIEDNPKKPIYIKTIWGVGY 224 >gi|197304013|ref|ZP_03169045.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC 29176] gi|197296981|gb|EDY31549.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC 29176] Length = 230 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A + L+ F V V + GE G+ EFD IILDL L + GFE Sbjct: 4 RILIVEDEESIADLEKDYLELSGFEVEVANDGETGLRRGLAVEFDLIILDLMLPGVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 64 ICRQIRGQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122 Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S++ D L ++ A+ V V G T KE+ ++ L+ N +KE Sbjct: 123 LIGSVVEQNDVIEIRGLKIDRTARRVWVNGEERSFTTKEFDLLSFLAGHPNHVYSKEELF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D ++ + V I K+R+K+ YIET+WG GY Sbjct: 183 REIWDMESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGY 226 >gi|159037188|ref|YP_001536441.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157916023|gb|ABV97450.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 218 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 133/221 (60%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA +++ L++E F V V G G+E + ++DA+ILD+ L + G+ Sbjct: 1 MRLLVVEDEARLAAALQRGLQAEGFVVDVASTGPAGLEAARHGDYDAMILDVMLPGLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR + PV +LS D+ GL GADDY++KPF+ L+AR+RA++RR Sbjct: 61 EVVRQLRAERRWLPVLMLSAKDGEYDQADGLDCGADDYLTKPFSYVVLLARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ + V G + LTG+EY +++ L R +T ++K L+H++D Sbjct: 121 PERPAVLAVGDLRLDPARRRVTRDGAEVALTGREYALLDYLMRRPDTVVSKVELLDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++V++ LR+KL G++ +ETV G GY L Sbjct: 181 ASVETAPNAVEVYVGYLRRKL-----GRDRLETVRGAGYRL 216 >gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 228 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 129/221 (58%), Gaps = 8/221 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D++ + + L L+ E F V G++ ++ ++ D IILDL L +I G E+ Sbjct: 4 ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHKIDLIILDLMLPEIDGMEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R + P+ +L+ DK+ GL+ GADDY+ KPF+ E+VAR++A++RRS G Sbjct: 64 AKEIRKTSL-VPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSSGI 122 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A S+I G L ++ +A+ V+V G + LT E+ ++ L + L++E L ++ Sbjct: 123 PEKEASSVIKQGILEIHPEAREVKVNGEEVVLTPLEFDLLLYLVTNRGKALSREQLLANV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + +D + +LR+KL AA +YI+TVWG GY Sbjct: 183 WGYDYFGEARTVDTHVTRLREKLQEAA---SYIKTVWGVGY 220 >gi|33595087|ref|NP_882730.1| transcriptional regulatory protein [Bordetella parapertussis 12822] gi|33565164|emb|CAE35960.1| transcriptional regulatory protein [Bordetella parapertussis] Length = 237 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 3/230 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL-TDIPGFEV 62 LLIEDD+A A + L V V+ G G+E ++D IILD L ++ G + Sbjct: 5 LLIEDDQANARYLANGLTELGHMVTVSGDGASGLENAMKDQWDIIILDRMLPNNVDGLSI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR TPV +LS +S+++D+V GL++G DDY+ KPF+ ELVAR+ A+VRR+R Sbjct: 65 LSTLRALGKKTPVLVLSALSAVDDRVDGLRAGGDDYLVKPFSFSELVARLDALVRRTRPD 124 Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + DLSVN+ + V+ G I L +E++++ L L + +T+ M L ++ Sbjct: 125 PDVKELRIADLSVNVATQKVQRAGRPISLQPQEFRLLVYLMLHAHRIVTRTMLLETIWGY 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 +P+ +IDV + +LR+K+ +A+ I T+ G GY L + + E Sbjct: 185 SFDPQSNVIDVQVSRLRRKI-DASCATPLIHTIRGAGYTLSDKQGSDNME 233 >gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 238 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V+ G ++ + DAIILD+ + + GF Sbjct: 13 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGFG 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RRS G Sbjct: 73 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGG 132 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q S + D+ ++ D V G + L+ E+ ++ + T L+K L+H Sbjct: 133 RVQEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 193 VWRYDFGGDVNVVESYVSYLRRKIDT--GDKRLLHTLRGVGYVLRE 236 >gi|19746167|ref|NP_607303.1| response regulator [Streptococcus pyogenes MGAS8232] gi|21910410|ref|NP_664678.1| putative DNA-binding response regulator [Streptococcus pyogenes MGAS315] gi|28895986|ref|NP_802336.1| response regulator [Streptococcus pyogenes SSI-1] gi|50914283|ref|YP_060255.1| CiaR [Streptococcus pyogenes MGAS10394] gi|56807753|ref|ZP_00365614.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71903585|ref|YP_280388.1| transcriptional regulatory protein [Streptococcus pyogenes MGAS6180] gi|94988681|ref|YP_596782.1| transcriptional regulatory protein [Streptococcus pyogenes MGAS9429] gi|94990571|ref|YP_598671.1| transcriptional regulatory protein ciaR [Streptococcus pyogenes MGAS10270] gi|94992504|ref|YP_600603.1| transcriptional regulatory protein ciaR [Streptococcus pyogenes MGAS2096] gi|94994493|ref|YP_602591.1| CiaR family transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|139473693|ref|YP_001128409.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209559503|ref|YP_002285975.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes NZ131] gi|306827286|ref|ZP_07460573.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] gi|19748346|gb|AAL97802.1| putative response regulator [Streptococcus pyogenes MGAS8232] gi|21904608|gb|AAM79481.1| putative DNA-binding response regulator [Streptococcus pyogenes MGAS315] gi|28811236|dbj|BAC64169.1| putative response regulator [Streptococcus pyogenes SSI-1] gi|50903357|gb|AAT87072.1| CiaR [Streptococcus pyogenes MGAS10394] gi|71802680|gb|AAX72033.1| transcriptional regulatory protein [Streptococcus pyogenes MGAS6180] gi|94542189|gb|ABF32238.1| transcriptional regulatory protein [Streptococcus pyogenes MGAS9429] gi|94544079|gb|ABF34127.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes MGAS10270] gi|94546012|gb|ABF36059.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes MGAS2096] gi|94548001|gb|ABF38047.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes MGAS10750] gi|134271940|emb|CAM30178.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209540704|gb|ACI61280.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes NZ131] gi|304430433|gb|EFM33455.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] Length = 224 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 131/224 (58%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++SI L + V D G++G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GDEGLYEAESGIYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I PV I++ ++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKELREKDIKIPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A I G+L V+L K V+V+G + L GKE+ ++ L +N L K + L+ Sbjct: 121 KFADKNISFGNLVVDLARKEVKVEGKVVELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++V+I K+RKKL N ++T+ GY+L+ N Sbjct: 181 FDSDTTISVVEVYISKIRKKLKGTR-FVNRLQTLRSVGYILKNN 223 >gi|329849811|ref|ZP_08264657.1| transcriptional activator protein copR [Asticcacaulis biprosthecum C19] gi|328841722|gb|EGF91292.1| transcriptional activator protein copR [Asticcacaulis biprosthecum C19] Length = 223 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD A +++ LK + G+ G++ K D IILD + + G Sbjct: 1 MKVLIVEDDNEAATNMQRGLKEAGIEARLAGDGQQGLDAVKAEMPDVIILDRMMPVMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR PV LS + +ED+V GL++GADDY+ KP+ ELVAR+ A+ RR Sbjct: 61 TMLQQLRSEGTDVPVLFLSALGELEDRVSGLRAGADDYLVKPYALTELVARVEALARRKD 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A +++ GDL +NL ++ V+ Q I L +E+Q++E L ++T+ M L ++ Sbjct: 121 KDAVDTVLRVGDLEMNLISRVVKRQNKTIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P+ +IDV I +LR KL + + + TV G GY L+ Sbjct: 181 AYHFDPQTNVIDVHISRLRSKL-DKDFDRPMLHTVRGEGYQLK 222 >gi|206969728|ref|ZP_03230682.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206735416|gb|EDZ52584.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 230 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETIEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces griseoaurantiacus M045] gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces griseoaurantiacus M045] Length = 244 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D +E Y D ++LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLLVLDIQMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 72 AARRIRAAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + DL ++L + V G + LT E+ ++E+ LT+E Sbjct: 132 AAAVAGADEENDTLAFADLRMDLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 239 >gi|310826554|ref|YP_003958911.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308738288|gb|ADO35948.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 228 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 138/234 (58%), Gaps = 12/234 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MR+LL+ED+ +LA ++ +L+ N + D+ DGIE L + +D I+LD+ L + Sbjct: 1 MRVLLVEDEVSLATALGKILEK---NKILVDVVHDGIEGKLLSENDVYDVIVLDIMLPGM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L+++R + PV +L+ S DKV+GL GADDY+ KPF EEL+ARIRA+ R Sbjct: 58 SGLDILKSIRDRGKNVPVLLLTAKDSTADKVKGLDMGADDYLVKPFVTEELLARIRALGR 117 Query: 118 RSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R Q +T DLS+N+++ + + G I LT KE Q++E+ T++KE L+ Sbjct: 118 RPWEVYQDNAITFSDLSLNINSGELLIGGAPIKLTSKEAQLLEMFIRNPGMTISKEQILD 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE--NAKDE 228 ++ +++++ LRKKL + + I+T+ G GYVL+E NA+ + Sbjct: 178 RIWGIESMAMENSVEIYVHYLRKKLKKS---RTVIKTIRGLGYVLKEEDNAQPQ 228 >gi|315497608|ref|YP_004086412.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315415620|gb|ADU12261.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 233 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 126/220 (57%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIED+ A + L E + V G+ + IILD L + G V Sbjct: 6 ILLIEDEPEGAAIVGEALTREGYEVVWRATASAGLSEAGLGQHHLIILDRMLGNTDGLNV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR A I+TP+ +LS ++ E+++ GL SGADDY+ KPF +EL+AR+RA++RRS+ Sbjct: 66 LTTLREAGITTPILVLSALARSENRIDGLDSGADDYLGKPFEPKELLARVRALIRRSQNR 125 Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 S +++ GDL +++ ++T G + L+ KE+++++LL +T++M L ++ Sbjct: 126 MHSAILIYGDLELHVKSRTAHRAGRHLALSPKEFEILKLLMEHAGDVVTRDMLLQKVWRL 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P+ +IDV + +LR +L + + +ETV G G+ L Sbjct: 186 NFDPQTNVIDVNMSRLRNRLEDGF-EQPVLETVRGIGFRL 224 >gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 233 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD +ILD+ + ++ G E Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 69 ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S H +S++ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 128 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 231 >gi|319953318|ref|YP_004164585.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319421978|gb|ADV49087.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 224 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ ED+ L S+ L + E+ + YE+D +ILD+ L G Sbjct: 1 MKILIAEDEIELQKSMATYLSQDGNVCETASDHEEALYKLDVYEYDIVILDINLVTGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ L+ +T I+S SS++DK+ GL GADDY+ KPF+ EL +RI+AI+RR + Sbjct: 61 EVLKVLKQQDRNTATIIISANSSLDDKLEGLDLGADDYLIKPFHLAELNSRIKAILRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I ++SV+ AKTV V+G + LT KEY +I KN L+KE+ HL+ Sbjct: 121 FGGTETIEFNEISVDTRAKTVFVEGRALILTRKEYDLILFFITNKNRVLSKEIIAEHLWG 180 Query: 181 GRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I V I LRKKL+ G YI+T +G GY E Sbjct: 181 DHSDLIDNYDFIYVHINNLRKKLTEV--GAKYIKTAYGSGYKFME 223 >gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 228 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD +ILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 64 ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S H +S++ GDL+VN D + V V+G LT KE+ ++ELL+ K L+ Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226 >gi|229048244|ref|ZP_04193812.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH676] gi|228722969|gb|EEL74346.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH676] Length = 230 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|319648966|ref|ZP_08003175.1| YcbL protein [Bacillus sp. BT1B_CT2] gi|317388960|gb|EFV69778.1| YcbL protein [Bacillus sp. BT1B_CT2] Length = 230 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ILLIEDD +++ ++ L E F V + GE+G+ L + +DAI+LD+ L + G + Sbjct: 3 HILLIEDDHSISEMVDHYLTKEGFEVVLAFDGEEGVRLFQQGNYDAILLDIMLPKLNGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R + PV ++S DK GL GADDYI+KPF+ EL ARI+A +RR+ Sbjct: 63 FLKMIR-EQSKVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARIKAAIRRATQ 121 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ Q ++ +L+V+++ +V+ G + LT E++M+ L TKE Sbjct: 122 YSVSEPANQKILRVHELTVDIENVSVQKNGEPLQLTSTEWKMLTLFVTNPKKVFTKEQIY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 182 RSVWNDDYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229 >gi|295703892|ref|YP_003596967.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801551|gb|ADF38617.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 239 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 130/231 (56%), Gaps = 7/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ +A ++++ L+ E + V V G+ G+E D I+LD+ L + G EV Sbjct: 5 ILIIEDEVRIARALQIELEHEGYQVLVVHEGKTGLETALNSSIDLILLDVMLPGLNGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI------RAIV 116 LR +R I P+ +L+ + DKV GL GA+DYI+KPF EE++AR+ RAIV Sbjct: 65 LRRIRKKDIYLPIILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHRAIV 124 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + DLSVNL+ + V + +I LT KEY ++ L KN L+++ L Sbjct: 125 QDVSEKKDVHLSIEDLSVNLETRDVIRKNKQIILTSKEYDLLVHLLKNKNIVLSRDNILL 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ E E ++DVFI LRKKL + I+T+ G GYV+R++ + Sbjct: 185 TVWGYDYEGETNVVDVFIGHLRKKLEEDTTS-SLIQTIRGVGYVIRKDQHE 234 >gi|332981849|ref|YP_004463290.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699527|gb|AEE96468.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 229 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K + I++ + +++ GEDGI + D +ILD+ L I GF Sbjct: 3 QILIIEDEKPIREFIKIGFERSGYSIVEATTGEDGIRKAREQTPDMVILDIILPGIDGFN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + +L+ + D++ GL+ GADDY+ KPFN EL+ R AI++R G Sbjct: 63 VCKTLRQEFPRMGIIMLTARNLEMDRIMGLEYGADDYVIKPFNPLELILRAEAILKRLHG 122 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++Q+ + +G + A+ V G I LT KEY ++E L N ++K+ L+ Sbjct: 123 NSQTSDRETLTSGPFKIATYAQKVYKHGMEIELTPKEYLLLETLISHPNVVMSKDKLLDI 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + K +DV + +LRKK+ + YIETVWG GY +E Sbjct: 183 VWGYEFDGDSKSVDVQVHRLRKKIEDDPAKPRYIETVWGIGYRWKE 228 >gi|291537897|emb|CBL11008.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F+ + + GE+ ++ + Y + I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK + P+ +LS I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 66 VCREVR-AKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124 Query: 122 -----HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A L + DL VNL +V + + I + KE +++ L+ N T+E Sbjct: 125 VKIEEPASELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+H++ + + +DV + +LR+K+ + + TVWG GY Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDNDSWS--LSTVWGIGY 227 >gi|291615563|ref|YP_003518305.1| QseB [Pantoea ananatis LMG 20103] gi|291150593|gb|ADD75177.1| QseB [Pantoea ananatis LMG 20103] gi|327395832|dbj|BAK13254.1| transcriptional regulatory protein QseB [Pantoea ananatis AJ13355] Length = 223 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 116/227 (51%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + I+ L F+V GE G + +DA++LDL L + G Sbjct: 1 MRILLIEDDRLIGDGIKAGLSKLGFSVDWFVSGEAGFQALTAAPWDAVVLDLSLPERDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ +++ +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRQWRQQGHDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + GD+ + VE G I L +E ++EL + LT+ LY Sbjct: 121 GQLQPELRHGDVVLIPGNLCVERNGENIALKSRELALLELFMRNPDRVLTRSQLEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E ++V I LRKKL N +I T+ G GY L E+ D Sbjct: 181 WDTEVSSNAVEVHIHHLRKKLGN-----RFIRTIHGVGYTLGESECD 222 >gi|229163529|ref|ZP_04291479.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus R309803] gi|228619911|gb|EEK76787.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus R309803] gi|324328428|gb|ADY23688.1| two-component response regulator ycbL [Bacillus thuringiensis serovar finitimus YBT-020] Length = 230 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|210610878|ref|ZP_03288631.1| hypothetical protein CLONEX_00821 [Clostridium nexile DSM 1787] gi|210152273|gb|EEA83280.1| hypothetical protein CLONEX_00821 [Clostridium nexile DSM 1787] Length = 224 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+K L+ ++ +L+ N++V GE+ +E +D +ILD+ + + G Sbjct: 1 MRLLLAEDEKPLSKALTAILERNNYSVDAVYDGEEALEYLDADNYDGVILDIMMPKVDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R PV +L+ S ++DKV GL +GA+DY++KPF+ +EL+ARIRA+ R Sbjct: 61 TVLKTIRNRGNLIPVLLLTAKSEVDDKVAGLDAGANDYLAKPFHSKELLARIRAMTRTQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S + G+ +++ + L KE+QM+EL+ + ++ E F+ ++ Sbjct: 121 AQADSKLQIGNGTLDRATFELSTPAGSFRLANKEFQMLELMMSNPSHLISAERFMEKIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E EV ++ V+I LRKKL+ A I+ GY L E Sbjct: 181 YDSEAEVNVVWVYISYLRKKLT-ALHANIQIKATRNVGYSLEE 222 >gi|297194827|ref|ZP_06912225.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720711|gb|EDY64619.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 128/219 (58%), Gaps = 6/219 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED++ +A +E L+S F V G+ ++ FD ++LD+GL GF Sbjct: 3 RILIAEDEERIASFVEKGLRSNGFTTTVAADGDTALDHALSGRFDLMLLDIGLPGRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 VLR LR ++++ PV +L+ S+ D V GL+ GADD+++KPF EEL+AR+R +R +R Sbjct: 63 VLRELRESRVTLPVVVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ +GDL ++L + V G + LT +E+ ++EL L++E L+H++ Sbjct: 123 APEVTVLRSGDLGLDLRTRRARVSGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P I+DV++ LRKKL G +ETV G GY Sbjct: 183 YDFDPGSNIVDVYVRALRKKL-----GAERLETVRGMGY 216 >gi|240146929|ref|ZP_04745530.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82] gi|257200912|gb|EEU99196.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82] Length = 234 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F+ + + GE+ ++ + Y + I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK + P+ +LS I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 66 VCREVR-AKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124 Query: 122 -----HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A L + DL VNL +V + + I + KE +++ L+ N T+E Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+H++ + + +DV + +LR+K+ + + TVWG GY Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDNDSWS--LSTVWGIGY 227 >gi|167033487|ref|YP_001668718.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166859975|gb|ABY98382.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 233 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD AL+ I L+ +F+V V G+ ++ + + D +ILDL L I G ++ Sbjct: 4 ILLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQKPDLVILDLMLPGIDGLQL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR S P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RRS + Sbjct: 64 CRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 123 Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 LI+ G L ++L +TV +G + L+ EY ++ +L+ + ++ L L Sbjct: 124 EPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQL 183 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G D + +DV I KLR+K + AG I+TVWG+GY+ Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 226 >gi|157148189|ref|YP_001455508.1| hypothetical protein CKO_04000 [Citrobacter koseri ATCC BAA-895] gi|157085394|gb|ABV15072.1| hypothetical protein CKO_04000 [Citrobacter koseri ATCC BAA-895] Length = 224 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L F V G+ L + +LD+ + + G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGQAADHLLHTETYALAVLDINMPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR + PV +L+ S++ D+V+GL GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFEIEELDARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q L GDL+ + D +Q + LT +E ++ +L R+ ++++ ++ Sbjct: 121 GQVQELQQLGDLAFH-DEGYFLLQAQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + I+++I +LRKKL G I T+ G GYVL Sbjct: 180 LSDEVSPESIELYIHRLRKKLQ---GSNVRITTLRGLGYVL 217 >gi|30022615|ref|NP_834246.1| two-component response regulator ycbL [Bacillus cereus ATCC 14579] gi|229112000|ref|ZP_04241543.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-15] gi|229129822|ref|ZP_04258788.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-Cer4] gi|296505012|ref|YP_003666712.1| two-component response regulator ycbL [Bacillus thuringiensis BMB171] gi|29898173|gb|AAP11447.1| Two-component response regulator ycbL [Bacillus cereus ATCC 14579] gi|228653513|gb|EEL09385.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-Cer4] gi|228671323|gb|EEL26624.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-15] gi|296326064|gb|ADH08992.1| two-component response regulator ycbL [Bacillus thuringiensis BMB171] Length = 230 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|145222334|ref|YP_001133012.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442767|ref|YP_004075646.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214820|gb|ABP44224.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315261070|gb|ADT97811.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 231 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 75/214 (35%), Positives = 119/214 (55%), Gaps = 6/214 (2%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F+V+ G + + DAI+LD+ + + G V+ ALR P Sbjct: 20 SLERGLRLSGFDVFTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 79 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL----IVTG 130 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR RG + I G Sbjct: 80 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR-RGSTATFSSETITVG 138 Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190 L V++ + V G + LT +E+ ++ +L+ K L++ L ++ + ++ Sbjct: 139 PLEVDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVV 198 Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DVFI LR+KL A G + TV G G+VLR+ Sbjct: 199 DVFIGYLRRKL-EANGAPRLLHTVRGVGFVLRQQ 231 >gi|330818201|ref|YP_004361906.1| DNA-binding response regulator [Burkholderia gladioli BSR3] gi|327370594|gb|AEA61950.1| DNA-binding response regulator [Burkholderia gladioli BSR3] Length = 247 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL +PG Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLPKMPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 DVLRRLRARNSVLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++I G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVIRHGSLSFDQVGRLAYANERVLDLSARELGLLEVLLQRVGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRILTVRGLGYCL 218 >gi|260866719|ref|YP_003233121.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O111:H- str. 11128] gi|257763075|dbj|BAI34570.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O111:H- str. 11128] gi|323179962|gb|EFZ65519.1| transcriptional activator protein irlR [Escherichia coli 1180] Length = 227 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYQVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221 >gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] Length = 229 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +++ K E+D ++LDL L + G Sbjct: 4 QVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALQMAKNKEYDMVLLDLMLPKVDGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIREFS-NVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIMRRTGK 122 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + ++ GDL ++ +++ V + G I+LT KE+ ++ELL ++E L+ Sbjct: 123 PAAAESRSRVVEAGDLVLDCESRRVTIAGKEINLTAKEFDVLELLVFNPGKVYSRENLLD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 TVWGYEYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYFQ 228 >gi|225567872|ref|ZP_03776897.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM 15053] gi|225163350|gb|EEG75969.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM 15053] Length = 229 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 131/227 (57%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + I L+ + +V GE+ ++L + +D I+LD+ L GF+ Sbjct: 4 RVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLSRENAYDMILLDVMLPKYDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R PV +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR Sbjct: 64 VCQQIREFS-DVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ +I+ ++ ++ +++ V ++ I+LT KE+ ++ELL++ N ++E LN Sbjct: 123 RDSKTVNDKVIIKREMKIDCESRRVFIEEKEINLTAKEFDLLELLAMNPNKVYSRENLLN 182 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G + P + + +DV I +LR+K+ Y+ T WG GY R Sbjct: 183 IVW-GYEYPGDARTVDVHIRRLREKIEKNPSDPKYVYTKWGVGYYFR 228 >gi|170691760|ref|ZP_02882924.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170143044|gb|EDT11208.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 225 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 131/221 (59%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ ++ L+ ++V V + G DG+ L + ++D I+LD+ L + G+ Sbjct: 1 MRILIIEDEPKTGAYLKKGLEESGYSVDVANDGADGLLLAQEQDYDVIVLDVMLPTMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + +TPV L+ + D+VRGL+ G DDY+ KPF EL+AR+R + RR Sbjct: 61 AVLKVLRATR-TTPVLFLTARDDVSDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ GDL ++++ + V RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRESELLKVGDLEIDVNRRRVRRGNTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ + K I+TV G GYV+ Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDDFPVK-LIQTVRGVGYVI 219 >gi|167901468|ref|ZP_02488673.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] Length = 247 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 222 >gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174] gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174] Length = 233 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F + + GE ++ ++ D I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFETRIVNDGEQALKDFASFQPDLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +LS DKV GL+ GADDYI KPF+ +ELVAR+RA++RR + Sbjct: 66 VCREIRHTS-DVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124 Query: 121 ----GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+ V+ DL++NL +V G +I + KE +++ L+ N T+E L Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGKQIDMPPKELELLYFLAASPNQVFTREQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +H++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDHPQWS--LSTVWGIGY 226 >gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 231 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 7/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + L E F V V G +E+ + + D IILDL L + GF V Sbjct: 4 VLVVDDEEHIQKLLHFTLSKEGFQVLVAADGPQALEMARQHRPDVIILDLMLPALDGFTV 63 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR + PV +LS + EDKVRGL GADDY++KPF+ EL AR++A +RR + Sbjct: 64 CELLRRDPSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQLRRRQ 123 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 A+ +V G L ++ + V + H +L KE++++ L+ ++E L+ + Sbjct: 124 SQAEREKLVYGPLVIDRERYAVAWKEHWQYLAPKEFELLYFLATHPGRVFSREQLLDQIW 183 Query: 179 -YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 YD P + +DV + +R+KL G IETV G GY RE A+ Sbjct: 184 GYDYLGGP--RTVDVHVRYIRQKLEQMPGAPQLIETVRGVGYRFREPAQ 230 >gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50] gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50] Length = 227 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ +A +EL L E + V G G++L D I+LD+ L + G E Sbjct: 4 KILIVEDEEKIARFVELELVHEGYEVIKAFDGRTGLDLALSEHADLIVLDVMLPRLNGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR +R + P+ +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR ++R Sbjct: 64 VLRRIRKEGNNVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRVALKRKST 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R L + G +S++ D V V G + LT +E++++ L KN + +E +N + Sbjct: 124 DRQETHKLEIHG-VSLDTDRHEVMVAGEPVELTNREFELLHTLMENKNIVMDREKLMNIV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E IIDV+I LR K+ + G K I TV G GYV+RE+ Sbjct: 183 CGYEYVGETNIIDVYIRYLRTKIDDRFGIK-LITTVRGVGYVIRES 227 >gi|156933148|ref|YP_001437064.1| hypothetical protein ESA_00958 [Cronobacter sakazakii ATCC BAA-894] gi|156531402|gb|ABU76228.1| hypothetical protein ESA_00958 [Cronobacter sakazakii ATCC BAA-894] Length = 226 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L + F V G L + + +LD+ + + G Sbjct: 1 MRLLLAEDNRELAHWLEKALANTGFAVDCVGDGLAADHLLQNERYAVAVLDIEMPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ ++ D+V+GL GADDY+ KPF EL AR+RA+VRRS Sbjct: 61 EVLSRLRRRGQAVPVLLLTAHGAVADRVKGLNEGADDYLPKPFELSELEARLRALVRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q G+L+ + D E+QG + LT +E+ ++ +L R+ +T++ ++ Sbjct: 121 GQVQEAQRLGELTFH-DEGYFELQGRPLALTPREHALLTVLMYRRRRPVTRQQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKL--SNAAGGKNYIETVWGRGYVL 221 D+ + I+++I +LRKKL SN I T+ G GYVL Sbjct: 180 LSDDVSPESIEIYIHRLRKKLLASNVQ-----ITTLRGLGYVL 217 >gi|88857480|ref|ZP_01132123.1| response regulator [Pseudoalteromonas tunicata D2] gi|88820677|gb|EAR30489.1| response regulator [Pseudoalteromonas tunicata D2] Length = 219 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ LA + L+ E ++ + + E D IILDLGL D+ G Sbjct: 1 MRVLIVEDDQLLAQGLLHTLRHEGYSADHCATAKSALFAIDMAEADLIILDLGLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R + PV +L+ +DK++GL GADDY++KPF EL+AR+R + RR Sbjct: 61 ALLKQVRKKYATLPVLVLTARDGTDDKIKGLDLGADDYLAKPFEVTELLARLRVMTRRIG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S + GD+++NL A TV G + L KEY +++ L ++E LY Sbjct: 121 KFASSTLEVGDVALNLAANTVVSAGTGLELPRKEYMVLKALMEHPGRIQSREQLETKLYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V I LRKKL + +I+TV G GY++ Sbjct: 181 WGEEVSSNAVEVHIHHLRKKLP-----EGFIKTVRGIGYIV 216 >gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 240 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L + G LS++ A+ V G RI LT +E+ ++ + ++ Sbjct: 126 LARDSRIDAGTLDIAG-LSIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ R E ++ I +LR K+ I TVWGRGY L Sbjct: 185 LNAVWGYRHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Eubacterium rectale ATCC 33656] gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Eubacterium rectale ATCC 33656] gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 230 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 129/224 (57%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L + V GE+ + + K +D I+LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALNMAKANSYDMILLDVMLPKMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQAIREFS-DVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSP 122 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+I GD+ ++ D++ + + + I+LT +E++++E+L +N ++E L Sbjct: 123 ERAPQVQSSVIEKGDIKLDCDSRRLFINDNEINLTAREFELLEILIKNENKVYSRESLLK 182 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ G D P +V+ +DV + +LR+K+ Y+ T WG GY Sbjct: 183 IVW-GEDYPGDVRTVDVHVRRLREKIEANPSEPKYVHTKWGVGY 225 >gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] Length = 239 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR+ +I TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I+ +L + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVAEAPDEDSILIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|219556768|ref|ZP_03535844.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis T17] gi|289568870|ref|ZP_06449097.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T17] gi|289542624|gb|EFD46272.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T17] Length = 236 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 LI LA S+E L+ F V G + + DAI+LD+ + + G V+ Sbjct: 16 LIAHSDVLA-SLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVT 74 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 ALR PVC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR A Sbjct: 75 ALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTAT 134 Query: 125 S---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 S I G L V++ + V G + LT +E+ ++ +L+ K L++ L ++ Sbjct: 135 SSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGY 194 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++DVFI LR+KL A GG + TV G G+VLR Sbjct: 195 DFAADTNVVDVFIGYLRRKL-EAGGGPRLLHTVRGVGFVLR 234 >gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 229 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 134/232 (57%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ ++ ++L L+ E + V G+D + + +D ++LD+ + + G E Sbjct: 4 RILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENWDLVLLDIMIPQLSGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR +R A+ TP+ +L+ + DKV GL GA+DYI+KPF EEL+AR+R +R+ Sbjct: 64 VLRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHLRKVVQ 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+L V DL V+L A V G +I LT +E+ ++ L KN LT+E + + Sbjct: 124 AANDNQTLSV-ADLQVDLHAYEVTRNGEKIELTPREFNLLVCLLKNKNIVLTREQLIESV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAK 226 + + ++DV+I LR+K+ KN+ I+TV G GY ++E+ + Sbjct: 183 WGYDYFGDTNVVDVYIRYLRQKVD-----KNFEIPIIQTVRGVGYTIKEDKQ 229 >gi|332307772|ref|YP_004435623.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175101|gb|AEE24355.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 235 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 126/227 (55%), Gaps = 11/227 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61 +LLI+DD+AL ++ L ++ + V V GE G+ K + FD IILD+ L + GFE Sbjct: 6 LLLIDDDQALTELLQEYLTAQGYTVQVASDGEAGLLAAKSGQHFDLIILDVMLPKVDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL+ LR + TPV +L+ D++ GL+ GADDY++KPFN EL AR++AIVRR Sbjct: 66 VLKRLRSTHV-TPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRVDI 124 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S Q++I GD+ +N+ A+TV H + LTG E+ ++ LL + K+ Sbjct: 125 QAGLQSDKQKQNMIEIGDVQLNIAAQTVACNSHEVELTGTEFAVLRLLMSSSPDLVPKQA 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + ID+ + LRKKL N + I+T G GYV Sbjct: 185 ISEQVLGRKLAAFDRSIDMHVSNLRKKL-NMFSEQEKIKTHRGVGYV 230 >gi|256380300|ref|YP_003103960.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255924603|gb|ACU40114.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 261 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 123/218 (56%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F+ V G + + + D ++LDL L + G + Sbjct: 40 RVLVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPALRELKPDLVLLDLMLPGMNGID 99 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R ++ P+ +L+ S D V GL+SGADDY+ KPF +ELVARIRA +RR+ Sbjct: 100 VCKAIR-SESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARMRRTEA 158 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL++++ V +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 159 EPAEVLQIGDLTIDVPGHEVLREGRPIQLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 218 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 219 RHAADTRLVNVHVQRLRSKVERDPEHPEVVLTVRGVGY 256 >gi|167841324|ref|ZP_02468008.1| two component heavy metal response transcriptional regulator, winged helix family protein [Burkholderia thailandensis MSMB43] Length = 231 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 135/228 (59%), Gaps = 2/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + ++ L E + V GE+G + Y++D ++LD+ L + GF Sbjct: 1 MKVLIVEDEAKVVDYLKSGLADEGWVVDAAADGEEGAWMAVEYDYDVVVLDVMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR+LR K TPV +L+ ++D+VRGL+ GADDY++KPF+ ELV R+RA+ RR+R Sbjct: 61 GVLRSLRAHK-DTPVIMLTARDRVDDRVRGLRDGADDYLTKPFSFLELVERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L ++ G R+ LT +E+Q++ +L+ R+ L+K ++D Sbjct: 120 VQESTLISIGDLRVDLISRRATRNGVRLDLTAQEFQLLGVLARRRGEVLSKTTITELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + +++ I +LR KL K + T+ G GYVL E A D+ Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVLEERADDD 226 >gi|77459601|ref|YP_349108.1| two component heavy metal response transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383604|gb|ABA75117.1| response regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 223 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 126/219 (57%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ + + L+ ++V + G DG+ L ++FD I+LD+ + + G+ Sbjct: 1 MNILVVEDEPKAGNYLLNGLQELGYSVSLARDGADGLHLALEFDFDVIVLDVMMPKMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + TPV L+ I D+V+GL+ GADDY+ KPF+ ELVAR+R + RR Sbjct: 61 EVLRRLR-KETDTPVLFLTARDDIADRVKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + + DL +++ + V G+RI LT KE+ +++L + L++ + + ++D Sbjct: 120 IHEEEQLQVADLQIDVLKRRVTRAGNRITLTNKEFALLQLFAAHTGQVLSRSLIASRVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++DV + +LR K+ + K I +V G GY Sbjct: 180 MNFDSDTNVVDVAVRRLRAKIDDPFPLK-LIHSVRGIGY 217 >gi|15893613|ref|NP_346962.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023165|gb|AAK78302.1|AE007546_8 Response regulator (CheY-like domain, HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325507735|gb|ADZ19371.1| Response regulator (CheY-like domain, HTH domain) [Clostridium acetobutylicum EA 2018] Length = 230 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ ++A + L+ NF V + G+ G+E K ++ IILDL L +I GFE Sbjct: 3 KILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAAKEKNYELIILDLMLPEIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------- 114 + + +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A Sbjct: 63 ICKQIRKIK-NTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHISRYER 121 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +V S + I L++N ++ V V G T KE+ ++ L+ + +KE Sbjct: 122 LVNSSNKNLDDEIEIRGLNINKASRKVFVNGKESQFTAKEFDLLVFLAQNPDRVFSKEEL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ E+ + V I K+R+K+ YIETVWG GY R Sbjct: 182 FDKIWGMDSFGEIATVTVHIKKIREKIEKDTSNPEYIETVWGAGYRFR 229 >gi|83748410|ref|ZP_00945433.1| CzcR [Ralstonia solanacearum UW551] gi|83724926|gb|EAP72081.1| CzcR [Ralstonia solanacearum UW551] Length = 248 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L++ED+ + +LK + +V DL G DG+ +++D I+LD+ L + Sbjct: 25 MRLLIVEDEPKAG---DYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGM 81 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++V+R LR K +TPV L+ + D+++GL+ GADDY+ KPF ELVAR+R I+R Sbjct: 82 DGWQVIRELRRRK-ATPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILR 140 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ DLS++ + V G RI LT KEY ++ LL+ R L++ + + Sbjct: 141 RGPMRESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQ 200 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + ++DV I +LR K+ + K I T+ G GYVL A+ Sbjct: 201 VWDVNFDSNTNVVDVAIRRLRAKVDDPFEHK-LIHTLRGMGYVLDTVAR 248 >gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 229 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ +A IEL L E + V G DG ++ K ++D I+LD+ L + G E Sbjct: 4 KILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMAKENDYDLILLDIMLPSMNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +LR LR + PV +L+ DKV GL GADDY++KPF EEL+ARIR ++R Sbjct: 64 ILRRLRESS-DIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVALKRKIV 122 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +LI +LS++L+ +V + I LT KE+ ++ L KN L+++ L Sbjct: 123 VVKENTSNLIKIKNLSIDLEKYSVTFKSEDIELTKKEFDLLLYLVENKNKVLSRDKILET 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++DV+I LR K+ + K YI TV G GYV+++ Sbjct: 183 VWGFDYFGDTNVVDVYIRYLRSKIDDKYKEK-YIYTVRGVGYVVKD 227 >gi|15613383|ref|NP_241686.1| two-component response regulator [Bacillus halodurans C-125] gi|10173434|dbj|BAB04539.1| two-component response regulator [Bacillus halodurans C-125] Length = 234 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIEDD +++ ++ L+ E ++V GE+ L + +D ++LDL L G + Sbjct: 5 KILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLMLPRRNGID 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R + PV I+S S DK GL GADDYI+KPF+ EL AR++A +RR+ Sbjct: 65 CLQWIRTKSV-VPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVN 123 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +AQ+ I +L V L + TV+ +G I LT KE+Q+++L TKE Sbjct: 124 YAQASQSAENERIKIHELVVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFTKEQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +I+V I +LR+K+ + YI+T+WG GY + E Sbjct: 184 YRSVWNDDYYSDENVINVHIRRLREKIEDTPSKPQYIKTIWGIGYRMGE 232 >gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 224 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA IEL LK E + V V G G+ + D +ILD L I G E+ Sbjct: 5 ILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAARESNPDLVILDWMLPGISGPEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +L+ + D+V GL +GADDY+ KPF+ EEL+AR+RA +RR++ Sbjct: 65 CRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRRNQTE 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ DLS+N + V +G R I LT KE+ ++E L LT+E L ++ Sbjct: 125 DPNILQFADLSLNHSTREV-YRGQRLIELTVKEFDLLEYLLAHPRQVLTREQILERVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR KL A ++TV G GYVLR+ Sbjct: 184 DFMGDSNIIEVYIRYLRLKLE-ANNESRLVQTVRGVGYVLRD 224 >gi|167893004|ref|ZP_02480406.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] Length = 237 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223 >gi|332530381|ref|ZP_08406326.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040192|gb|EGI76573.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 225 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L ++ L+ + V G + +DA++LDLGL G Sbjct: 1 MRLLILEDDPQLGEALSGGLRQQGHVVDWFTSGPPADAALRGTAYDALVLDLGLPGTDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR R ++ PV +L+ ++E ++ GL GADDY+ KP +EL AR+RA++RR+ Sbjct: 61 VWLRRWRQGGLALPVLVLTARDTLEQRIEGLDLGADDYLIKPIALDELAARLRAMLRRAT 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A Q+ V GDL + +K V Q + LTG+E ++E+L L+K L LY Sbjct: 121 GRATQAEWVHGDLRYDPASKQVHWQDKPVELTGREISLLEVLLKNPQRVLSKTQLLEQLY 180 Query: 180 D-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D G EPE ++V I LR+K++ + TV G GY L Sbjct: 181 DWGGGEPESNALEVHIHHLRRKIA-----PGVVRTVRGLGYAL 218 >gi|320009638|gb|ADW04488.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 245 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 126/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + L+ E + V G + + + DA+ILD+ L D+ G Sbjct: 20 VRVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRTARDFRPDAVILDVMLPDMDGL 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ S+ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 80 AVLGRLRRELSDVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 139 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++S +V GDL ++ D+ V IHLT E++++ L L+K L+ Sbjct: 140 TASVRSESTLVVGDLVLDEDSHEVHRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDR 199 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + +++++I LRKK+ AG I T G GY+++ Sbjct: 200 VWNYDFGGQANVVELYISYLRKKID--AGRTPMIHTRRGAGYLIKPG 244 >gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 255 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ L+ + + L+ E V G + + + D ++LD+ L D+ G Sbjct: 28 RVLVVDDEAPLSELLSMALRYEGCEVRSAGDGAGAVRAAREFRPDVVVLDVMLPDMDGLA 87 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR PV L+ S+ED++ GL +G DDY++KPF+ EE+VAR+R +VRRS G Sbjct: 88 VLGRLRREIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRS-G 146 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 AQ S++ GDL ++ D+ V G +HLT E++++ L L+K L+ Sbjct: 147 AAQAARGGSVLTVGDLRLDEDSHEVVRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILD 206 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+KL G I T G GY+++ Sbjct: 207 RVWSYDFGGQANVVELYISYLRRKLEGGTGLPPMIHTRRGAGYLIK 252 >gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99] Length = 236 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 135/236 (57%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G Sbjct: 2 VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 62 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 122 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 236 >gi|218234694|ref|YP_002369334.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228923280|ref|ZP_04086569.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954807|ref|ZP_04116827.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072041|ref|ZP_04205250.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus F65185] gi|229180856|ref|ZP_04308192.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 172560W] gi|229192737|ref|ZP_04319696.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 10876] gi|218162651|gb|ACK62643.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228590827|gb|EEK48687.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 10876] gi|228602619|gb|EEK60104.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 172560W] gi|228710975|gb|EEL62941.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus F65185] gi|228804796|gb|EEM51395.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836374|gb|EEM81726.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 230 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETIEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|110804550|ref|YP_688070.1| DNA-binding transcriptional activator CusR [Shigella flexneri 5 str. 8401] gi|110614098|gb|ABF02765.1| putative 2-component transcriptional regulator [Shigella flexneri 5 str. 8401] Length = 227 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R +++R Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLQRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221 >gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 244 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + G+D + +L + +ILDL + ++ G Sbjct: 16 MKILVVDDDKEIVQLLEIYVRNEGYEPVSAYNGKDALTKLNTTPDIGLVILDLMMPEMDG 75 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R S P+ +LS ++ DK++GL +GADDY++KPFN E++AR+R+++RRS Sbjct: 76 MEVIKRIR-KDSSIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRS 134 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G + ++ G L +N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 135 EGQMTNDQPDILNVGPLQINKDSHEVKTINGDLIQLTALEFGILYLLASHPNRVFSADDI 194 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG+ IETVWG GY Sbjct: 195 FERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGY 239 >gi|167967698|ref|ZP_02549975.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis H37Ra] gi|61229967|sp|P0A5Z6|PRRA_MYCTU RecName: Full=Transcriptional regulatory protein prrA gi|61229968|sp|P0A5Z7|PRRA_MYCBO RecName: Full=Transcriptional regulatory protein prrA gi|90108539|pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra From Mycobacterium Tuberculosis gi|90108540|pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra From Mycobacterium Tuberculosis gi|90108541|pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra Comlexed With Mg2+ gi|90108542|pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra Comlexed With Mg2+ Length = 233 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G + + DAI+LD+ + + G V+ ALR P Sbjct: 22 SLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR A S I G Sbjct: 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGP 141 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 L V++ + V G + LT +E+ ++ +L+ K L++ L ++ + ++D Sbjct: 142 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 201 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 VFI LR+KL A GG + TV G G+VLR Sbjct: 202 VFIGYLRRKL-EAGGGPRLLHTVRGVGFVLR 231 >gi|282900388|ref|ZP_06308338.1| manR (Two component Transcriptional regulator, Winged helix family) [Cylindrospermopsis raciborskii CS-505] gi|281194701|gb|EFA69648.1| manR (Two component Transcriptional regulator, Winged helix family) [Cylindrospermopsis raciborskii CS-505] Length = 268 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D+ L + +L E + V +T G+ G EL + +D +ILD L + G Sbjct: 33 MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR + PV L+ +++D+V+GL +G DDY+ KPF EL+AR+RA++RRS Sbjct: 93 EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ + GDL ++++ + QG I L+ KE Q+++ LT + H Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ G PE +I I LR+K+ G I TV+G+GY Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKI-ELGGESMLIHTVYGKGY 253 >gi|167917734|ref|ZP_02504825.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] Length = 239 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 222 >gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 244 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D +E Y D ++LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 72 AARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ DL ++L + V ++ LT E+ ++E+ LT+E Sbjct: 132 AAAVAGAAEENDVLTFADLRMDLATREVTRGSRQVELTRTEFTLLEMFMAHPRQVLTREQ 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + AAG + TV G GYVLR+ + Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLRQGGAE 244 >gi|229153277|ref|ZP_04281455.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228629881|gb|EEK86532.1| DNA-binding response regulator [Bacillus cereus m1550] Length = 225 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K +TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTDNVSSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQKEINFFQFKDLFVDASSNVVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D++I +RKKL + YI+T+ GRGY + Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSM 223 >gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 234 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++ +A I L E + V GEDG+E + I+LDL L GF Sbjct: 4 RVLIVEDEQPIADIINFNLVKEGYETEVAYNGEDGLEKFASFSPHIIVLDLMLPGKDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R ++ S P+ +L+ S DKV GL+ GADDY++KPF EL+ARI+A++RR Sbjct: 64 VCKEIR-SQSSVPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALLRRVNL 122 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S + ++ D+ +NL V+ QG I LT +E+Q+ L R+ +++E Sbjct: 123 SGQDSSSSEKDEDILKYNDVEINLKTAEVKKQGQAIDLTYREFQLFVYLVKRQGEVISRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ E + +DV I +LR+KL + G +YI T G GY LR Sbjct: 183 RMIEEVWGYDFIGEDRTVDVTIRRLREKLEDDPGSPSYIMTKRGMGYYLR 232 >gi|323488492|ref|ZP_08093736.1| OmpR family DNA-binding response regulator [Planococcus donghaensis MPA1U2] gi|323397709|gb|EGA90511.1| OmpR family DNA-binding response regulator [Planococcus donghaensis MPA1U2] Length = 224 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M++LL EDD+ L + +LK + +V +VT+ GED I + +D +ILD + + Sbjct: 1 MKVLLAEDDERLGELVVHLLKKKGASVVDWVTE-GEDAIAYAQASFYDVVILDWMMPNGD 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G V R LR S V +L+ ++ D+V GL +GADDYI KPF EEL AR+ A+ RR Sbjct: 60 GVSVCRHLRAVGYSGAVLMLTAKGTVPDRVEGLDAGADDYIVKPFEIEELWARLNALTRR 119 Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +R + ++ G+L +N + T+ Q I LT +E+Q+ ELL + + LT+E+ L+ Sbjct: 120 TRTPIREETVMIGELLLNRTSHTLYYQEEEILLTPREFQLFELLVVNRGQVLTRELILDR 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +K ID + LRKK+S + + +I+ V G GY Sbjct: 180 IWGLDAEVSLKTIDATVKLLRKKISRTS-KEEFIKAVRGVGY 220 >gi|319764865|ref|YP_004128802.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330827070|ref|YP_004390373.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317119426|gb|ADV01915.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329312442|gb|AEB86857.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 224 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 119/222 (53%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L+ V +V E L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRTLRGSGAVVDHVASGSEADAALLTNNEFDLLILDLGLPRLHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR + PV IL+ IE++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 LEVLKRLRGRGSALPVLILTAADGIEERVKGLDLGADDYMAKPFALSELEARVRALTRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + I G L + + + G + L+ +E ++E+L R ++KE + L Sbjct: 121 MGGTSATIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E I+V+I +LRKK+ G I TV G GY L Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIER---GPIRIATVRGLGYCL 219 >gi|296157300|ref|ZP_06840136.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892636|gb|EFG72418.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 260 Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLVRSLRQSAYAVDHVKTGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNMPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + V I L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218 >gi|325523567|gb|EGD01867.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 220 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+S+ F V G+ + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR +S PV I++ +I D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++SLI G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL G + I V G GY++ Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 216 >gi|183599453|ref|ZP_02960946.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827] gi|188021700|gb|EDU59740.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827] Length = 224 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL++ED+ L H + + LK V D ED E F D ++DLGL D Sbjct: 1 MRILIVEDNALLRHHLTVQLKELGHQV---DAAEDAKEADYFLRESCPDIAMVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +++ R +I+ PV +L+ S ++KV+ L SGADDY++KPF+ EELVAR++A++R Sbjct: 58 DGLSMIKRWRSTQINIPVLVLTARESWQEKVQALNSGADDYVTKPFHLEELVARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A ++ ++L K V G + LT EY +IE L ++K+ + Sbjct: 118 RNSGLASQVLELDGFVIDLSRKEFTVNGEPVKLTAFEYTIIETLLRNNGKVVSKDSLMRQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQFHAN-DVIVTVRGQGY 218 >gi|41406932|ref|NP_959768.1| hypothetical protein MAP0834c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118465275|ref|YP_880280.1| PrrA family transcriptional regulator [Mycobacterium avium 104] gi|41395282|gb|AAS03151.1| hypothetical protein MAP_0834c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118166562|gb|ABK67459.1| two component response transcriptional regulatory protein prra [Mycobacterium avium 104] Length = 233 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G + + DAI+LD+ + + G V+ ALR P Sbjct: 22 SLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR A S I G Sbjct: 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGP 141 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 L V++ + V G + LT +E+ ++ +L+ K L++ L ++ + ++D Sbjct: 142 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 201 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 VFI LR+KL A GG + TV G G+VLR Sbjct: 202 VFIGYLRRKL-EANGGPRLLHTVRGVGFVLR 231 >gi|228988340|ref|ZP_04148433.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771405|gb|EEM19878.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 222 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I L E + +G+ + ++D IILD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSGLTQEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R+ K+ TPV I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS + Sbjct: 61 CRQIRLVKM-TPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNCN 119 Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ I DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 222 >gi|15601853|ref|NP_233484.1| DNA-binding response regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121728501|ref|ZP_01681525.1| DNA-binding response regulator [Vibrio cholerae V52] gi|147672339|ref|YP_001214980.1| DNA-binding response regulator [Vibrio cholerae O395] gi|153816730|ref|ZP_01969397.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457] gi|153821227|ref|ZP_01973894.1| DNA-binding response regulator [Vibrio cholerae B33] gi|153827796|ref|ZP_01980463.1| DNA-binding response regulator [Vibrio cholerae 623-39] gi|227812668|ref|YP_002812678.1| DNA-binding response regulator [Vibrio cholerae M66-2] gi|254284724|ref|ZP_04959691.1| DNA-binding response regulator [Vibrio cholerae AM-19226] gi|254850261|ref|ZP_05239611.1| DNA-binding response regulator [Vibrio cholerae MO10] gi|262158660|ref|ZP_06029774.1| two-component system response regulator QseB [Vibrio cholerae INDRE 91/1] gi|298499864|ref|ZP_07009670.1| DNA-binding response regulator [Vibrio cholerae MAK 757] gi|9658551|gb|AAF96996.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629219|gb|EAX61657.1| DNA-binding response regulator [Vibrio cholerae V52] gi|126512749|gb|EAZ75343.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457] gi|126521286|gb|EAZ78509.1| DNA-binding response regulator [Vibrio cholerae B33] gi|146314722|gb|ABQ19262.1| DNA-binding response regulator [Vibrio cholerae O395] gi|148876641|gb|EDL74776.1| DNA-binding response regulator [Vibrio cholerae 623-39] gi|150425509|gb|EDN17285.1| DNA-binding response regulator [Vibrio cholerae AM-19226] gi|227011810|gb|ACP08021.1| DNA-binding response regulator [Vibrio cholerae M66-2] gi|227015746|gb|ACP11955.1| DNA-binding response regulator [Vibrio cholerae O395] gi|254845966|gb|EET24380.1| DNA-binding response regulator [Vibrio cholerae MO10] gi|262029540|gb|EEY48190.1| two-component system response regulator QseB [Vibrio cholerae INDRE 91/1] gi|297541845|gb|EFH77896.1| DNA-binding response regulator [Vibrio cholerae MAK 757] Length = 218 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S+++ L + + V + G + K +F A+ILDL L D+ G Sbjct: 1 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A + PV IL+ I D+V+GL GAD+YI KPF EEL+AR+R I+RRS Sbjct: 61 EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI G+L ++L + + + LT EY+++ L + ++KE+ L+ Sbjct: 121 GSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKKL + N ++ V G GY++ Sbjct: 181 WDEGSSDNAIEVHIHNLRKKLPD-----NLVKNVRGVGYMI 216 >gi|325104913|ref|YP_004274567.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] gi|324973761|gb|ADY52745.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] Length = 224 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ L+ SI L E++ + IE + Y++D I+LDL L G Sbjct: 1 MKLLIIEDEVELSKSITKYLSDESYLCEQAYTYQAAIEKVELYDYDCILLDLMLPGGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL L+ K + V I+S S++DK++GLQ GADDY+SKPF EL ARI +++RR Sbjct: 61 EVLNILKKHKKNAGVIIISAKDSLDDKIKGLQIGADDYLSKPFFLPELAARIHSVIRRRN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I +L V++ +KTV+V + LT KE+ ++ L KN +TK HL Sbjct: 121 FENSNIITYEELEVDVISKTVKVNHIPVPLTRKEFDLLLFLMGNKNKVVTKTAIAEHLSG 180 Query: 181 GRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E I I L++KL++ AG +NY++T++G GY Sbjct: 181 DLAEMLDNYDFIYAHIKNLKRKLAD-AGCQNYLKTLYGNGY 220 >gi|108799871|ref|YP_640068.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119868981|ref|YP_938933.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108770290|gb|ABG09012.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119695070|gb|ABL92143.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 263 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 122/227 (53%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ ALA + L+ E F V G + I + + + D +ILD+GL I G E Sbjct: 32 RALVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGLPGIDGLE 91 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + V +L+ ++ D V GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 92 VCRQLRTFSDAY-VVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRM 150 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 V G LS+++ A+ V + G I LT E+ ++E LS R L++ Sbjct: 151 RPVAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRR 210 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ + +G ++DV I LR+KL + A +I TV G GY Sbjct: 211 QLLDIVREGPWVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGY 257 >gi|15608043|ref|NP_215418.1| two component response transcriptional regulatory protein PRRA [Mycobacterium tuberculosis H37Rv] gi|15840322|ref|NP_335359.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|31792091|ref|NP_854584.1| two component response transcriptional regulatory protein PRRA [Mycobacterium bovis AF2122/97] gi|121636826|ref|YP_977049.1| two component response transcriptional regulatory protein prrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660681|ref|YP_001282204.1| two component response transcriptional regulatory protein PrrA [Mycobacterium tuberculosis H37Ra] gi|148822112|ref|YP_001286866.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis F11] gi|215402702|ref|ZP_03414883.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis 02_1987] gi|215410489|ref|ZP_03419297.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis 94_M4241A] gi|215426171|ref|ZP_03424090.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis T92] gi|215429761|ref|ZP_03427680.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis EAS054] gi|215445046|ref|ZP_03431798.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis T85] gi|218752567|ref|ZP_03531363.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis GM 1503] gi|224989297|ref|YP_002643984.1| two component response transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253800073|ref|YP_003033074.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN 1435] gi|254231209|ref|ZP_04924536.1| two component response transcriptional regulatory protein prrA [Mycobacterium tuberculosis C] gi|254363833|ref|ZP_04979879.1| two component response transcriptional regulatory protein prrA [Mycobacterium tuberculosis str. Haarlem] gi|254549881|ref|ZP_05140328.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185800|ref|ZP_05763274.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis CPHL_A] gi|260199923|ref|ZP_05767414.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T46] gi|260204107|ref|ZP_05771598.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis K85] gi|289442314|ref|ZP_06432058.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T46] gi|289446470|ref|ZP_06436214.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis CPHL_A] gi|289555315|ref|ZP_06444525.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN 605] gi|289573530|ref|ZP_06453757.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis K85] gi|289744634|ref|ZP_06504012.1| two component response transcriptional regulatory protein prra [Mycobacterium tuberculosis 02_1987] gi|289749425|ref|ZP_06508803.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T92] gi|289752958|ref|ZP_06512336.1| two component response transcriptional regulatory protein prra [Mycobacterium tuberculosis EAS054] gi|289756989|ref|ZP_06516367.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis T85] gi|289761037|ref|ZP_06520415.1| two component response transcriptional regulatory protein prrA [Mycobacterium tuberculosis GM 1503] gi|294996384|ref|ZP_06802075.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis 210] gi|297633422|ref|ZP_06951202.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN 4207] gi|297730407|ref|ZP_06959525.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN R506] gi|298524395|ref|ZP_07011804.1| two component response transcriptional regulatory protein prra [Mycobacterium tuberculosis 94_M4241A] gi|306775029|ref|ZP_07413366.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu001] gi|306782056|ref|ZP_07420393.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu002] gi|306783577|ref|ZP_07421899.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu003] gi|306787941|ref|ZP_07426263.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu004] gi|306792278|ref|ZP_07430580.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu005] gi|306796677|ref|ZP_07434979.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu006] gi|306802565|ref|ZP_07439233.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu008] gi|306806745|ref|ZP_07443413.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu007] gi|306966942|ref|ZP_07479603.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu009] gi|306971137|ref|ZP_07483798.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu010] gi|307078865|ref|ZP_07488035.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu011] gi|307083424|ref|ZP_07492537.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu012] gi|313657734|ref|ZP_07814614.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN V2475] gi|1314043|emb|CAA97378.1| TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA [Mycobacterium tuberculosis H37Rv] gi|13880485|gb|AAK45173.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|31617679|emb|CAD93788.1| TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA [Mycobacterium bovis AF2122/97] gi|121492473|emb|CAL70941.1| Two component response transcriptional regulatory protein prrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600268|gb|EAY59278.1| two component response transcriptional regulatory protein prrA [Mycobacterium tuberculosis C] gi|134149347|gb|EBA41392.1| two component response transcriptional regulatory protein prrA [Mycobacterium tuberculosis str. Haarlem] gi|148504833|gb|ABQ72642.1| two component response transcriptional regulatory protein PrrA [Mycobacterium tuberculosis H37Ra] gi|148720639|gb|ABR05264.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis F11] gi|224772410|dbj|BAH25216.1| two component response transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321576|gb|ACT26179.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN 1435] gi|289415233|gb|EFD12473.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T46] gi|289419428|gb|EFD16629.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis CPHL_A] gi|289439947|gb|EFD22440.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN 605] gi|289537961|gb|EFD42539.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis K85] gi|289685162|gb|EFD52650.1| two component response transcriptional regulatory protein prra [Mycobacterium tuberculosis 02_1987] gi|289690012|gb|EFD57441.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T92] gi|289693545|gb|EFD60974.1| two component response transcriptional regulatory protein prra [Mycobacterium tuberculosis EAS054] gi|289708543|gb|EFD72559.1| two component response transcriptional regulatory protein prrA [Mycobacterium tuberculosis GM 1503] gi|289712553|gb|EFD76565.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis T85] gi|298494189|gb|EFI29483.1| two component response transcriptional regulatory protein prra [Mycobacterium tuberculosis 94_M4241A] gi|308216381|gb|EFO75780.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu001] gi|308325287|gb|EFP14138.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu002] gi|308331580|gb|EFP20431.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu003] gi|308335393|gb|EFP24244.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu004] gi|308339198|gb|EFP28049.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu005] gi|308342935|gb|EFP31786.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu006] gi|308346761|gb|EFP35612.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu007] gi|308350676|gb|EFP39527.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu008] gi|308355337|gb|EFP44188.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu009] gi|308359275|gb|EFP48126.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu010] gi|308363185|gb|EFP52036.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu011] gi|308366841|gb|EFP55692.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu012] gi|323720612|gb|EGB29690.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis CDC1551A] gi|326904877|gb|EGE51810.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis W-148] gi|328459812|gb|AEB05235.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN 4207] Length = 236 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G + + DAI+LD+ + + G V+ ALR P Sbjct: 25 SLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 84 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR A S I G Sbjct: 85 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGP 144 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 L V++ + V G + LT +E+ ++ +L+ K L++ L ++ + ++D Sbjct: 145 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 204 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 VFI LR+KL A GG + TV G G+VLR Sbjct: 205 VFIGYLRRKL-EAGGGPRLLHTVRGVGFVLR 234 >gi|325284131|ref|YP_004256672.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324315940|gb|ADY27055.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 221 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 8/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPG 59 MR+LL+EDD +A L ++V G+D +E +F +LD+ + ++ G Sbjct: 1 MRLLLLEDDARIAEPTRDALSEAGYDVTWVQTGDDALEAAVMGDFPLAVLDVMVPGELDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F V +R A + T + L+ + +ED+VRGL G D Y++KPF EL+A +RA+ RR Sbjct: 61 FAVAGEMREAGLDTAILFLTARTEVEDRVRGLDIGGDAYLTKPFAMPELLATLRALTRRE 120 Query: 120 RGHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RG + ++ G +++ A+TV G + +TG+EY ++E L+L + T+E L+ Sbjct: 121 RGQSAPVLQFAQGRGTLDTVARTVTWDGEEVAVTGREYALLEALTLSPDRWFTREDLLDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + E +I+DV++ +R+KL+ A I + GRGY Sbjct: 181 VWGAEFDGEARIVDVYVRYVRRKLAPEA-----IRSERGRGY 217 >gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R] gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R] Length = 255 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 137/236 (58%), Gaps = 16/236 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDI 57 M+IL+++D++A+ S+ +S +FN Y L EDGI+ + + + +ILD+ + + Sbjct: 24 MKILVVDDEQAVRDSLR---RSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPRM 80 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ IL+ ++ D+V GL +GADDY++KPF EEL+AR+R++VR Sbjct: 81 DGLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVR 140 Query: 118 RSRGHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RS + Q+L+ GDL+++ +++ V G I LT E+ +++LL + LT Sbjct: 141 RSAVESNQSSNIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLT 200 Query: 171 KEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + L ++ G D P ++V+I LR+K + G I TV G GYVLRE A Sbjct: 201 RAQILEEVW-GYDFPTSGNALEVYIGYLRRK-TELEGEDRLIHTVRGVGYVLRETA 254 >gi|254247310|ref|ZP_04940631.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124872086|gb|EAY63802.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 300 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL + G Sbjct: 58 MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 117 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 118 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 177 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + H + L+ +E ++E+L R ++KE ++HL + Sbjct: 178 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 237 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E I+V++ LRKK+ + I TV G GY L + A Sbjct: 238 WGEEVSNNAIEVYVHGLRKKIEPSG---VRISTVRGLGYCLEKVA 279 >gi|16126989|ref|NP_421553.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221235781|ref|YP_002518218.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13424351|gb|AAK24721.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220964954|gb|ACL96310.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 223 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD A ++ LK ++V GE G+ + +D +++D + + G Sbjct: 1 MRILIIEDDLEAAGAMAHGLKEAGYDVAHAPDGEAGLAEAQKGGWDVLVVDRMMPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR TPV LS + + D+V GL++GADDY+ KP+ EL+AR+ A+ RR Sbjct: 61 TVVETLRREGDQTPVLFLSALGEVNDRVVGLKAGADDYLVKPYAFPELMARVEALSRRRE 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + G+L +NL +TV QG I L +E+Q++E + ++T+ M L ++ Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P+ +IDV I +LR K+ + ++TV G GY L Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGF-DRAMLQTVRGAGYRL 221 >gi|119716097|ref|YP_923062.1| response regulator receiver [Nocardioides sp. JS614] gi|119536758|gb|ABL81375.1| response regulator receiver [Nocardioides sp. JS614] Length = 224 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 2/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++ + L++ + V G + +EL + D +ILDLGL D+ G + Sbjct: 3 RVLVVDDEPQIVRALAINLRARGYEVVAAGDGGEALELAAAHPPDVVILDLGLPDLDGVD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ LR + P+ +LSG S DKV L +GADDY++KPF +EL+AR+RA++RR++ Sbjct: 63 VIAGLR-GWTAVPILVLSGRSDSTDKVDALDAGADDYVTKPFGMDELMARLRAMLRRNQA 121 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GD+ V+L A V V+G I LT E+ ++E+L +++ L ++ Sbjct: 122 VDPTPAVAFGDVVVDLTATRVTVRGQEIRLTPTEWHLLEVLVRHPGKLISQRQLLLDVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + +++ +LR+KL Y T G GY Sbjct: 182 PGYETAQGNLRLYVAQLRRKLEPDPSRPRYFRTEPGMGY 220 >gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes serotype 4b str. F2365] gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b H7858] gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-071] gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-194] gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes HPB2262] gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes serotype 4b str. F2365] gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b H7858] gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-071] gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes HPB2262] gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-194] Length = 240 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 135/236 (57%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G Sbjct: 6 VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 66 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 126 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 186 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 240 >gi|221195593|ref|ZP_03568648.1| response regulator receiver protein [Atopobium rimae ATCC 49626] gi|221184780|gb|EEE17172.1| response regulator receiver protein [Atopobium rimae ATCC 49626] Length = 227 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 129/229 (56%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRILL ED+K +A +I +LK E ++V D DG+ E +D ILD+ + + Sbjct: 1 MRILLAEDEKRMAAAIVALLKQEKYDV---DHMADGVSALLALESNMYDIAILDVMMPKM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEV R R I+ P+ +L+ S ++DKV GL +GADDY++KPF+ EL+AR+RA+ R Sbjct: 58 NGFEVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFHTAELLARLRALGR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RS S++ GDLS++ T+ G + L+ KE +++E + +T++ Sbjct: 118 RSSNFQDSVLHFGDLSLDTSTATITCNSSGQSVRLSEKELRILEYMIGSHGRIVTRDQLA 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + E ++V++ RKKL+ G K I+ V G GY LRE Sbjct: 178 IKIWGFESDAEYNNVEVYMSFTRKKLA-FVGSKVEIKAVRGLGYELREQ 225 >gi|186475207|ref|YP_001856677.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184191666|gb|ACC69631.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 253 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLVRSLRQSAYAVDHVKTGAEADTALSMQTFDLLILDLGLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + I L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVKHGSLSFDQVGRIAYANDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218 >gi|78045188|ref|YP_358964.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997303|gb|ABB16202.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 234 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDD+++A L+ F V + G+ G++ E+D I+LDL L I GFE Sbjct: 3 KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLILLDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR +R K TPV ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 VLRKVRAEK-DTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGRYER 121 Query: 119 -SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G Q L+ L ++ A+ V ++LTGKE+ ++ L+ N TKE Sbjct: 122 LTGGRKNQDLLEFPGLVIDTAARRVFAGDKEVNLTGKEFDLLLFLAKNPNRVFTKEELFE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIET+WG GY Sbjct: 182 RIWGMDSLGDLSTVTVHIRKLREKIEKDPSNPQYIETIWGVGY 224 >gi|15673657|ref|NP_267831.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|281492256|ref|YP_003354236.1| Two-component system response regulator [Lactococcus lactis subsp. lactis KF147] gi|12724689|gb|AAK05773.1|AE006398_4 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|281375927|gb|ADA65421.1| Two-component system response regulator [Lactococcus lactis subsp. lactis KF147] gi|326407140|gb|ADZ64211.1| Two-component system response regulator [Lactococcus lactis subsp. lactis CV56] Length = 225 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L+ S+ LKS V D G +G+ + +D I+LDL L + GF Sbjct: 5 IKILLVEDDLSLSKSVYDFLKSFAQVKQVYD-GVEGLYEAELGIYDLILLDLMLPEKNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR + TPV I++ S++DK+ G GADDY++KPF +EL ARI+A+++R+ Sbjct: 64 EVLKELREQNVDTPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRTG 123 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S +T G++ +NL K+ V + L GKE+ ++ L +N L KE + ++ Sbjct: 124 KLEDSNGLTYGNIRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + V +++V++ K+RKKL + N + T+ GY+LR Sbjct: 184 GYDSDTTVTVVEVYMSKIRKKLKDTEFVNN-LSTLRNVGYILR 225 >gi|39937875|ref|NP_950151.1| two-component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39651735|emb|CAE30257.1| two-component transcriptional regulator, winged helix family [Rhodopseudomonas palustris CGA009] Length = 221 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD +A + L + + GE+ ++ AIILDLGL + G Sbjct: 1 MRVLVVEDDSRIASELARGLGEAGYLAEIVGDGEEAWFRGDTEDYAAIILDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R TPV IL+ S ++V G+ +GADDY+ KPF EEL+AR+R+IVRRS Sbjct: 61 TILKRWRDNGRLTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S++ G+++++ V V G + L+ EY++ L L + +++ ++Y Sbjct: 121 GHASSVVTIGEVTLDERQMQVSVGGKPVSLSPLEYRLASYLVLHRGRVVSQYELAENIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + I+V + ++R+K+ G + IET G GY++ Sbjct: 181 QDDAHDSNAIEVLVGRVRRKI-----GADLIETRRGFGYIV 216 >gi|113968625|ref|YP_732418.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114049227|ref|YP_739777.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|117918739|ref|YP_867931.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|113883309|gb|ABI37361.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113890669|gb|ABI44720.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] gi|117611071|gb|ABK46525.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 225 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 129/231 (55%), Gaps = 16/231 (6%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ILL+EDD A +I+ ++K + N+ G G+ ++D +ILD L + Sbjct: 1 MKILLVEDD---ATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRMLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS ++ ++++V+GL++G DDY++KPF EL+ R +++ Sbjct: 58 DGLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117 Query: 118 RSRGHAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R QS+ +T DL V L + V + GH + L KE+Q+++ L N +++ Sbjct: 118 R----GQSVPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLKYLMEHANQVISRT 173 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 174 LLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQ 223 >gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 235 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ L+ +N V GE+G+ L + D IILD+ L + G E Sbjct: 3 KILVVDDETNILELIKYNLEKDNHRVITALDGEEGLRLAQQEPPDLIILDVMLPKVDGLE 62 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR ++ P+ ++S D V GL+ GADDYI+KPF+ EL AR++A +RR+ Sbjct: 63 VCRCLRSHPSTSRLPILMVSARRETVDHVVGLEMGADDYITKPFSPRELAARVKANLRRA 122 Query: 120 R-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + SLI G L +NLD V V+G ++ T KE++++ +L T+EM Sbjct: 123 QYDKLVASNTSLIRVGGLEMNLDKFEVHVEGTPVNFTPKEFKLLHVLMSHPGKVFTREML 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + + + +DV I +R+K+ G YI TV G GY E+ K Sbjct: 183 LEQVWGFDNNVDTRTVDVHIRYVRQKIEVDPGNPKYILTVRGVGYKFSEDYK 234 >gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 241 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 132/238 (55%), Gaps = 10/238 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+ L+ + L +E + V V D G+ G E +FD I+LDL L + GFE Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR + TPV IL+ ++ E+ V+GL+SGADDYI+KPF EL+AR+ A++RRS G Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + S IV G L++ + V + G I L KE++++ L+ + +T++ Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +N ++ + +DV + LRKKL +I+++ G GY L N K + Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKL-ELDPQSVHIDSIRGVGYKLVVNKKQASI 240 >gi|209518321|ref|ZP_03267146.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209501240|gb|EEA01271.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 257 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRIL+ EDD LA +++S + Y D + G+E FD +ILDLGL + Sbjct: 1 MRILIAEDDSILADG---LVRSLRQSAYAVDHVKSGVEADTALSIQTFDLLILDLGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ R Sbjct: 58 SGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +++ G LS + + V I L+ +E ++E+L R ++KE ++H Sbjct: 118 RGAGGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + +E I+V++ +LRKK+ + I TV G GY L Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218 >gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759] gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759] Length = 245 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 124/236 (52%), Gaps = 22/236 (9%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ +A I L L E + + G + ++L + Y D ++LD+ L + G++V Sbjct: 6 ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGMDGYQV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R +TP+ +LS + DKV GL+ GADDYI KPF+ ELVAR+ A++RR Sbjct: 66 CTEIRKTS-NTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAMT 124 Query: 119 ---------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 S H + + L VN+ TV +GH + + KE +++ LS Sbjct: 125 ESTQKQTQNSTYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLSS 184 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R N T+E L+ L+ + + +DV I +LR+KL+N I TVWG GY Sbjct: 185 RPNQVFTREQLLDKLWGYEYVGDTRTVDVHIKRLREKLNNNHNWS--IATVWGIGY 238 >gi|312622290|ref|YP_004023903.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202757|gb|ADQ46084.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 232 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 133/229 (58%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + ++ L+ E +N + D G +E+ K + D +ILD+ ++D G+EV Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDGYEV 63 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 L+ +R K + PV +LS S DK+ GL+ GADDYI+KPF+ +ELV R++A++RR Sbjct: 64 LKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + GD+ V+ +TV+ + L+ KE+++++LL + L ++ L Sbjct: 124 SLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVPLSFKEFELLKLLIENRGRVLDRDFILQR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + + + +DV I LR+KL + YIETV G GY E ++ Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232 >gi|290893701|ref|ZP_06556682.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290556774|gb|EFD90307.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|307571948|emb|CAR85127.1| DNA-binding two-component response regulator [Listeria monocytogenes L99] Length = 237 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 11 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 71 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 130 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q+ ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 131 SQAEPVSQDKVIIGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 190 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL A GG+N I+T+WG GY Sbjct: 191 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 233 >gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 132/228 (57%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ ++ ++ L+ F V G+ +E+ K + D IILDL L + G Sbjct: 2 IKVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSEQPDFIILDLMLPKMDGM 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V + LR + +TP+ +L+ DK+ GL+ GADDY++KPF+ E++AR++AI+RR Sbjct: 62 DVCKTLRQERNNTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAILRRFQ 121 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + GH + L+ GD+ + + V + ++ LT KE++++ L+ + LT++ Sbjct: 122 NTPEATTGHQEVLLQFGDIRIYPEKYEVFCKDVKVELTPKEFELLNYLASHQGRVLTRDQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN +++ + +I+DV + LR+KL + YI+TV G GY L Sbjct: 182 LLNAVWNYDFIGDSRIVDVHVSHLREKLEDDTKNPKYIKTVRGLGYKL 229 >gi|169628053|ref|YP_001701702.1| transcriptional regulatory protein PrrA [Mycobacterium abscessus ATCC 19977] gi|169240020|emb|CAM61048.1| Probable transcriptional regulatory protein PrrA [Mycobacterium abscessus] Length = 233 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 116/213 (54%), Gaps = 4/213 (1%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G + + + DAI+LD+ + + G V+ ALR P Sbjct: 22 SLERGLRLSGFEVNTASDGAEALRCATEHRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131 VC+LS +S++D+V GL++GADDY++KPF ELVAR++A++RR A S I G Sbjct: 82 VCVLSARTSVDDRVAGLEAGADDYLTKPFVLAELVARVKALLRRRGAVATSSTETITVGP 141 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 L V + + + G + LT +E+ ++ +L+ K L++ L ++ + ++D Sbjct: 142 LEVEIPGRRARINGVEVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 201 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 VFI LR+KL A G + TV G G+VLR Sbjct: 202 VFIGYLRRKL-EAGGAPRLLHTVRGVGFVLRSQ 233 >gi|172060288|ref|YP_001807940.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171992805|gb|ACB63724.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 226 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 133/223 (59%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 M+ILL+ED++ +A ++ L V D G DG+ L +DAI+LD L I G Sbjct: 1 MKILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGESYDAIVLDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ ALR A PV ILS + +++++RGL++G DDY+ KPF+ E+VAR+ A+ RRS Sbjct: 61 LKIVAALRAAGSKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRS 120 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + + GDL ++L ++ V G+ I L +E++++E L +T+ M L ++ Sbjct: 121 QDNGFDTKLKVGDLCIDLLSRKVARAGNAILLKPREFKLLEYLMRHAEQVVTRTMLLENI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P+ +IDV + KLR+K+ + ++ + T+ GY+L Sbjct: 181 WEYHFDPQTNVIDVHVSKLRQKI-DTGFDRSLLRTIRNAGYML 222 >gi|254490397|ref|ZP_05103586.1| heavy metal response regulator subfamily [Methylophaga thiooxidans DMS010] gi|224464530|gb|EEF80790.1| heavy metal response regulator subfamily [Methylophaga thiooxydans DMS010] Length = 226 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 6/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ I L F V G DG FD IILD+ L DI G+ Sbjct: 1 MRLLVVEDERKAGEFIRQGLTEAGFLVTWMSNGLDGYHQAMTETFDVIILDVMLPDIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L++LR A TPV L+ S+ D+V+GL+ GADDY+ KPF EL+ARIR+++R R Sbjct: 61 RILKSLREAGNQTPVIFLTARDSVTDRVKGLELGADDYLVKPFAFVELLARIRSLLR--R 118 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G++ ++I DL +++ ++ V G +I L+ KE+ ++EL R+ L + + + Sbjct: 119 GNSTAIIEELKVADLVLDIPSRKVTRAGKKITLSQKEFLLLELFIRRQGEVLPRSIIASE 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + + +IDV + +LR K+ + K I TV G GY L + ++ Sbjct: 179 VWDMNFDSDTNVIDVAVRRLRAKIDDEFEQK-LIHTVRGMGYKLEDESE 226 >gi|89899315|ref|YP_521786.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344052|gb|ABD68255.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 227 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 127/233 (54%), Gaps = 11/233 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL EDD L + L+ F V D DG+ + ++ A +LDLGL Sbjct: 1 MRILLAEDDSMLGDGLRAGLRQLGFQV---DWVRDGLAAERELACGDYAAAVLDLGLPLK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VL+A+R +KI+TPV +L+ ++ D++RGL GADDY+ KP + EL AR+R++VR Sbjct: 58 DGIDVLQAVRASKITTPVLVLTARDAVPDRIRGLDLGADDYVVKPVDLHELGARLRSLVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G Q ++ G + + A+ V + + L+ +E+ ++ +L L + L++E Sbjct: 118 RAHGQMQDVLRCGAVLLEPSARRVSLNDEPVALSTREFDLLHVLMLNADRVLSREQLEQQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 LY E E I+V I LR+KL + I+TV G GY ++ + + Sbjct: 178 LYSWGYEVESNAIEVHIHHLRRKLQ-----PDLIQTVRGIGYTVQRGSAPASA 225 >gi|49481122|ref|YP_039105.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332678|gb|AAT63324.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 225 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K+ TPV I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVKM-TPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+ I DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NLQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGHNVVVNPNVVDLYIGYIRKKLKCEKKNR-YIQTIHGRGYSMVE 225 >gi|15807647|ref|NP_295328.1| response regulator [Deinococcus radiodurans R1] Length = 243 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 128/242 (52%), Gaps = 28/242 (11%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MR L++ED+ + + L+ + V + EL + FDA+++D+GL + P Sbjct: 1 MRFLVVEDELDIRRPLVANLREAGYAVDEAGSAAEARELAGSFPFDALMVDVGLPEGPLA 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF+++R LR A ++PV L+ S+ D++ GL +G DDY+ KPF+ E+ AR+RA+VRR Sbjct: 61 GFDLVRDLRAAGKASPVLFLTARDSVTDRITGLDAGGDDYLVKPFHLGEVQARLRALVRR 120 Query: 119 SRGHAQSLIVTGD---------------------LSVNLDAKTVEVQGHRIHLTGKEYQM 157 R AQS D L ++ ++ V G R+ LT KE+ + Sbjct: 121 GRAEAQSARSWRDCGWTGQAAPCSGAASGWRLARLRLDWTSRAVFRSGERVALTAKEFSL 180 Query: 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217 +E+L+ T++ ++ ++DGR + E ++D ++ LR+KL G ++T+ G Sbjct: 181 LEVLASHPGRVYTRDELIDRVWDGRFDAESNVVDTYVRNLRRKL-----GDEVVQTMRGV 235 Query: 218 GY 219 GY Sbjct: 236 GY 237 >gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria marthii FSL S4-120] gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria marthii FSL S4-120] Length = 236 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 135/236 (57%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G Sbjct: 2 VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 62 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 122 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKM-ENVK 236 >gi|312863367|ref|ZP_07723605.1| putative response regulator ArlR [Streptococcus vestibularis F0396] gi|322516994|ref|ZP_08069883.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|311100903|gb|EFQ59108.1| putative response regulator ArlR [Streptococcus vestibularis F0396] gi|322124411|gb|EFX95908.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 224 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 128/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++S+ L + V D G++G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GDEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR I+TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 TVLKELREQGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + GD+ VNL + V + L GKE+ ++ +N L K + L+ Sbjct: 121 KFDQNTLSFGDVRVNLATNSTYVGDKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ K+RKKL N ++T+ GY+L+ Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTDFATN-LQTLRSVGYILK 221 >gi|298291170|ref|YP_003693109.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927681|gb|ADH88490.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 219 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD L ++ + + + +VT + + + +D I+LDL L D G Sbjct: 1 MRILLIEDDGVLGAAVRDQIVGDGHSADWVTRI-DAARDAMAGAAYDLILLDLMLPDGRG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 LRALR A TPV IL+ + + D++ GL +GADDY+ KPF+ +EL ARI ++ RR Sbjct: 60 IVFLRALRAAGNVTPVIILTALDQVSDRIEGLTAGADDYLVKPFDLDELSARIGSVARRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ +I L +++ ++V +G + LT +E+ ++E R L+K LY Sbjct: 120 SGNPNPIIRHHSLDIDIARRSVRREGRPVQLTAREWALLEAFLARPGQVLSKAQLEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E E I+V + +LRKKL G + IET G GY L Sbjct: 180 DFDAEVESNTIEVHVSRLRKKL-----GADLIETERGLGYRL 216 >gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 245 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 10/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D ++ Y D ++LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKAAAYRPDLVVLDIQMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 72 AARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + + DL ++L + V G ++ LT E+ ++E+ LT+E Sbjct: 132 AAAMGAGSPADEDALTFADLRMDLATREVTRGGRQVELTRTEFTLLEMFLTHPRQVLTRE 191 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ + Sbjct: 192 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 245 >gi|193222240|emb|CAL60747.2| Transcriptional regulatory protein CusR [Herminiimonas arsenicoxydans] Length = 227 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ A + L F V + G DG + ++D ++LD+ L D+ G+ Sbjct: 1 MKILVVEDENKTADYVRQGLMEAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++LR A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 RIVKSLREAGKQMPVLFLTARGGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +QS + DL ++L + G +I LT KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 APSQSERLEVADLILDLPRRKATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV I +LR K+ + K I TV G GY L Sbjct: 181 DMNFDSDSNAIDVAIRRLRAKIDDPFEPK-LIHTVRGMGYTL 221 >gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++ L+ IEL LK E + + D G G+E+ + E D I+LD+ L +I G Sbjct: 2 VKILIVEDEEKLSRFIELELKHEGYEIVKADNGRTGLEIAEKGEIDLILLDIMLPEINGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVLR LR P+ +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR +++ Sbjct: 62 EVLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I G LS++ V I LT +E+ ++++L KN LT+ + + Sbjct: 121 VTVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +IDV+I LR K+ +A K I TV G GYV+++ Sbjct: 181 VCGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKD 225 >gi|114762503|ref|ZP_01441947.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Pelagibaca bermudensis HTCC2601] gi|114544758|gb|EAU47763.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Roseovarius sp. HTCC2601] Length = 219 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 119/224 (53%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57 MRILLIEDD L ++ + ++ +V +VT D D + + D I+LDL L D Sbjct: 1 MRILLIEDDTTLGAAVRDQIAADGQSVDWVTRLDAARDAMAATSY---DLILLDLMLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G L+ LR TPV IL+ + + D++ GL +GADDY+ KPF+ EL ARI ++ R Sbjct: 58 RGIGFLKGLRTRGDVTPVIILTALDQVSDRIDGLNAGADDYLVKPFDLSELSARIGSVAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G+ ++ G L ++L A++V G + LT +E+ + E R L+K Sbjct: 118 RYSGNPNPILTHGPLDIDLAARSVHRDGRHVPLTAREWALFEAFLARPGQLLSKAQLEEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY E E I+V + +LRKKL +A IET G GY L Sbjct: 178 LYAFDAEVESNTIEVHVSRLRKKLGSAT-----IETERGMGYRL 216 >gi|284037811|ref|YP_003387741.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283817104|gb|ADB38942.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 230 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ LA ++ L+ ++ V V G+ G + +D I+LD+ L + GF Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++++R K TPV +L+ M S++DK+ G ++GADDY+ KPF EL+AR+RA+ +RS Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +++ DL ++L+ K RI LT KE+ +++ L + +++ + Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D + +IDV++ LRKK+ K I TV G GY+L+E+ Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTK-LIHTVIGMGYMLKED 230 >gi|24111908|ref|NP_706418.1| DNA-binding transcriptional activator CusR [Shigella flexneri 2a str. 301] gi|30062021|ref|NP_836192.1| DNA-binding transcriptional activator CusR [Shigella flexneri 2a str. 2457T] gi|24050711|gb|AAN42125.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 301] gi|30040265|gb|AAP15998.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 2457T] gi|281599865|gb|ADA72849.1| putative 2-component transcriptional regulator [Shigella flexneri 2002017] gi|313646838|gb|EFS11295.1| transcriptional activator protein irlR [Shigella flexneri 2a str. 2457T] gi|332761444|gb|EGJ91726.1| transcriptional activator protein irlR [Shigella flexneri 2747-71] gi|332763836|gb|EGJ94074.1| transcriptional activator protein irlR [Shigella flexneri K-671] gi|332768456|gb|EGJ98640.1| transcriptional activator protein copR [Shigella flexneri 2930-71] gi|333021888|gb|EGK41136.1| transcriptional activator protein irlR [Shigella flexneri K-304] Length = 227 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKLLRGKIDNDFEPK-LIQTVRGVGYML 221 >gi|291458575|ref|ZP_06597965.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon 078 str. F0262] gi|291419108|gb|EFE92827.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon 078 str. F0262] Length = 223 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++ L SI L+ + V GE EL +D I+LD+ L I GF Sbjct: 1 MKLLVVEDERELRQSIAEGLRLSGYTVDTAADGEIAEELFFSGSYDLIVLDINLPKIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R V +L+ + I+D+V+GL GA+DY+ KPF+ EEL ARIR+++RR + Sbjct: 61 TLLQLIRRENKLVNVIMLTARTEIKDRVKGLDLGANDYLIKPFHFEELEARIRSLLRRKQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ +S ++ +KTV +G I LT KE ++E L L + +++E L H++D Sbjct: 121 LQEDTVLSAQGISYDMRSKTVTAEGKAIRLTAKELGILEYLLLNQGNYISQEELLEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G + V + LR+KL + GKN I G+GY++ E Sbjct: 181 GDMNEFSNTVRVHVSALRRKLKESL-GKNIIRNEIGKGYIIDE 222 >gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 231 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD L + +L E F V V + GE+G++L F+ ++LD+ + + GF Sbjct: 3 KILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQLLAEQHFNLVLLDVMMPKLNGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +L LR TPV +L+ +D+V GL++GADDY++KPF+ EL+AR+RAI+RR+ Sbjct: 63 MLARLRKTH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQS 121 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RG + + DL + + G + LT E+ ++E L LR + + L Sbjct: 122 TQPQRGGSSEEVRFMDLVLQPGLQQASCHGELLELTATEFGLLECL-LRNPGQIVSKSQL 180 Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + L G+ EP + ID+ + LRKKL G+ +TV GRGY+ E A Sbjct: 181 SELVLGKKLEPFDRAIDMHLSNLRKKLPERTDGQPRFKTVRGRGYLWLEQA 231 >gi|126435514|ref|YP_001071205.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126235314|gb|ABN98714.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 263 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 122/227 (53%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ ALA + L+ E F V G + I + + + D +ILD+GL I G E Sbjct: 32 RALVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGLPGIDGLE 91 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + V +L+ ++ D V GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 92 VCRQLRTFSDAY-VVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRM 150 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 V G LS+++ A+ V + G I LT E+ ++E LS R L++ Sbjct: 151 RPVAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRR 210 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ + +G ++DV I LR+KL + A +I TV G GY Sbjct: 211 QLLDIVREGPWVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGY 257 >gi|146291368|ref|YP_001181792.1| DNA-binding transcriptional activator CusR [Shewanella putrefaciens CN-32] gi|145563058|gb|ABP73993.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 226 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L+ F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR++ ++RR Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S LS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYETK-LIQTVRGVGYML 221 >gi|108803040|ref|YP_642977.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764283|gb|ABG03165.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 227 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 130/219 (59%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ + +E L ++ ++ + GE G+ + + D ++LD+ L + G Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR+ + PV +L+ +E KV L +GADDY++KPF EEL+ARIRA+VRR+ Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL ++L ++ V G ++ L+ +E+ ++E L L+++ L+ ++D Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P ++DV++ LR+KL + G + I TV G GY Sbjct: 181 YAFDPGSNVVDVYVRYLRRKL-DRPGEPSLITTVRGAGY 218 >gi|310827285|ref|YP_003959642.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308739019|gb|ADO36679.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 222 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 128/222 (57%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL IED+ + +++ + K +N + V + GE+G+ +D I+LD+ L G Sbjct: 1 MRILFIEDEVKITDALQELCKIQNIDCDVANDGEEGLLFALNPIYDVIVLDIMLPMKSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R I+TPV +L+ +++DKV+GL GADDY+ KPF+ +EL ARIRA+ RR Sbjct: 61 EILKEVRDRDITTPVLMLTAKGTVDDKVKGLDLGADDYLIKPFSAKELFARIRALSRRPD 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I++ D+S N ++ + L+ KE +++E+L R N T+E L+ ++ Sbjct: 121 HEIKGEIISFEDVSFNTKKNMMQTPENEYKLSVKEAKILEMLLKRPNQVFTREQILDRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E I++++ LRKKL+N I+T+ G GY L Sbjct: 181 GFDKEVNENNIEIYVHNLRKKLANTNVK---IDTIRGVGYTL 219 >gi|295700958|ref|YP_003608851.1| transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440171|gb|ADG19340.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 225 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 129/220 (58%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ + ++ L+ + V + G +G+ L K E+D I+LD+ L I G+ Sbjct: 1 MRILVIEDEAKTSAYLKKGLEESGYTVDIAADGAEGLILAKESEYDVIVLDVMLPSIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + +TPV L+ + D+V+GL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 TVLKTLRATQ-TTPVLFLTARDDVSDRVKGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL V++ + V+ G RI LT KE+ +++LL R+ LT+ ++++D Sbjct: 120 PRENDVLTLGDLEVDVTRRRVKRGGKRIDLTPKEFSLLQLLVRRQGEVLTRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + +++V I +LR K+ + K I TV G GYV Sbjct: 180 MNFDSDTNVVEVAIRRLRGKVDDDFPVK-LIHTVRGVGYV 218 >gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN] gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae Br4923] gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae] gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae Br4923] Length = 228 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 131/233 (56%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRIL ++DD+A+ S+ +S +FN Y +L DG+E + DA++LD+ + + Sbjct: 1 MRILAVDDDRAVRESLR---RSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+ARIRA++R Sbjct: 58 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLS-VNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174 R++ + V S + LD T EV +G R I LT E+ ++E+L LT+ Sbjct: 118 RTKPDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRI 177 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 178 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGESRLIHTVRGVGYVLRETPP 228 >gi|16804460|ref|NP_465945.1| hypothetical protein lmo2422 [Listeria monocytogenes EGD-e] gi|47095903|ref|ZP_00233507.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217963478|ref|YP_002349156.1| regulatory protein VanR [Listeria monocytogenes HCC23] gi|224500135|ref|ZP_03668484.1| regulatory protein VanR [Listeria monocytogenes Finland 1988] gi|254827997|ref|ZP_05232684.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254831155|ref|ZP_05235810.1| regulatory protein VanR [Listeria monocytogenes 10403S] gi|254900440|ref|ZP_05260364.1| regulatory protein VanR [Listeria monocytogenes J0161] gi|254913321|ref|ZP_05263333.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937702|ref|ZP_05269399.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284802860|ref|YP_003414725.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578] gi|284996001|ref|YP_003417769.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923] gi|16411910|emb|CAD00500.1| lmo2422 [Listeria monocytogenes EGD-e] gi|33439124|gb|AAQ18702.1| putative response regulator [Listeria monocytogenes] gi|47015780|gb|EAL06709.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217332748|gb|ACK38542.1| regulatory protein VanR [Listeria monocytogenes HCC23] gi|258600380|gb|EEW13705.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610305|gb|EEW22913.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284058422|gb|ADB69363.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578] gi|284061468|gb|ADB72407.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923] gi|293591325|gb|EFF99659.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 231 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q+ ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL A GG+N I+T+WG GY Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 227 >gi|268609476|ref|ZP_06143203.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 220 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 122/217 (56%), Gaps = 3/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK L+ + L++E + V + GE ++ + Y ++LD+ L D+ GF V Sbjct: 4 ILIVEDDKELSSLLTDFLRAEGYTVSAVESGERAVQFFERYGARLVVLDINLPDMNGFAV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR TP+ I+S + EDK+ GL GADDYI KP++ + L+A+I+ I +R + Sbjct: 64 CSKLR-ENADTPILIVSARTDKEDKLNGLDLGADDYIEKPYDIDILLAKIKGIFKRR--Y 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 +S++ + +NL KT E+ G + L+ KE+ ++ LL + L KE + ++ Sbjct: 121 QRSMLSASGVVLNLANKTAEIDGKLVQLSAKEFDLLALLIENQGKALKKEYLFSTVWGSD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E++ + V I +LR+KL + + TVWG GY Sbjct: 181 SDSELQTLHVHINRLRQKLGDDPKNARRLLTVWGVGY 217 >gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] Length = 251 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 132/235 (56%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L E ++V GE+ ++L + D I+D+ L + GFE Sbjct: 17 KILVVDDDPAILELVGYNLAKEGYDVLKAYDGEEALKLANEEDVDMFIVDIMLPGMDGFE 76 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++R +R + +TPV LS DKV GL+ GADDYI+KPF+ EL+AR++AI RR Sbjct: 77 LVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 136 Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 QS I DL ++++ V+V+G +++LT E++++ L+ + ++++ Sbjct: 137 SAAVQSKEERPKKITAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 196 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K+E Sbjct: 197 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKEE 251 >gi|167624826|ref|YP_001675120.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167354848|gb|ABZ77461.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 225 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 +R+LLIEDD+ LA ++ +LM ++ +V++ G G+ L + +D +++D+GL + G Sbjct: 2 IRVLLIEDDRDLAETLLQLMELAQMLPDHVSN-GIAGLTLARSNSYDVLVIDVGLPKLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + V + LR + I TP+ L+ SSI++K+ G SG DDY++KPF+ EL+ARI A+ R Sbjct: 61 YSVCKQLRASGIDTPILFLTAFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRK 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + L + G L +N + + V QG ++ LT Y ++E+L ++++ N L+ Sbjct: 121 SSHVKRLEIAG-LIMNCEQQQVSYQGQKLELTPACYTLLEVLMRASPEIVSRQSLENKLW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G + P ++ I LR+ L+ + + T GRG+ LR + Sbjct: 180 -GDEPPSSNVLKAHIYYLRRALTQVQLAE-MLYTSTGRGWALRPS 222 >gi|300714596|ref|YP_003739399.1| two-component system response regulator [Erwinia billingiae Eb661] gi|299060432|emb|CAX57539.1| Two-component system response regulator [Erwinia billingiae Eb661] Length = 220 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+ + I+ L F+V G++G+ +DA++LDL L + G Sbjct: 1 MRILVIEDDRLIGDGIKAGLIKMGFSVDWFTEGKEGLAALSAAPYDAVVLDLSLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRQWRQQGQDEPVLILTARDALEQRVTGLQQGADDYLCKPFALSEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G L+ G + + + V + G + L +E ++EL + LT+ LY Sbjct: 121 GQLHPLLSHGAVVMESGSHRVTLNGEPLELKSRELALLELFLMNTGRVLTRAQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++V I LRKKL G +I T+ G GY L E Sbjct: 181 WDEDVSSNAVEVHIHHLRKKL-----GSQFIRTIHGVGYTLGE 218 >gi|300118431|ref|ZP_07056177.1| two-component response regulator [Bacillus cereus SJ1] gi|298724216|gb|EFI64912.1| two-component response regulator [Bacillus cereus SJ1] Length = 208 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 119/201 (59%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ L + + L +E+++V GED ++ +D I+LD+ + I G Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYISMTTYDLIVLDIMIPGINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR +TPV +L+ +I+D+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ DL V+ + V I L+ KE+ ++E + K LT++ H+++ Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKL 201 E IIDV++ LRKKL Sbjct: 181 YDYEGGSNIIDVYVRYLRKKL 201 >gi|221066592|ref|ZP_03542697.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220711615|gb|EED66983.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 238 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 6/233 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +A + L L+ E V G+DG+ + +DA++LDL L + G E Sbjct: 6 RILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 122 HAQSL-IVTGDLSVN---LD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQS + +G LSVN +D A+ + G + LT +E+ ++ + + ++ L Sbjct: 126 LAQSARLESGSLSVNGLVMDPVARDASLNGRHLDLTPREFDLLYFFARQSGKVFSRMDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 N ++ + E ++ I +LR K+ I TVWGRGY E + E Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVERNPAQPTRILTVWGRGYKFAEAGERE 238 >gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes Clip81459] gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-064] gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-175] gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816] gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220] Length = 236 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 135/236 (57%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G Sbjct: 2 VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 62 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 122 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 236 >gi|210632475|ref|ZP_03297403.1| hypothetical protein COLSTE_01305 [Collinsella stercoris DSM 13279] gi|210159570|gb|EEA90541.1| hypothetical protein COLSTE_01305 [Collinsella stercoris DSM 13279] Length = 226 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA ++ +L+ + V G DG+ + +D ++LD+ L D+ G Sbjct: 1 MRVLLVEDTPRLAEAVAEILRKSGYGADVAQTGFDGLGMATSGAYDVVLLDIMLPDMSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR A + PV +L+ + D+V GL +GADDY+SKPF+ EL+ARIRA+ RR Sbjct: 61 DVLRELRAAGETVPVILLTARQGVGDRVAGLDAGADDYLSKPFHASELLARIRAVTRRPA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + A + I + ++ +TV +G + LT +E Q++E L R + + + + Sbjct: 121 TYRAGNAIEACGMRLDGVERTVACKGSSEALELTERESQLLEALMRRAGSAVARSALMAR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++V + LR KL A G IETV G GY L E Sbjct: 181 VWGPTVCADENRLEVLVHALRDKL-EACGAPARIETVRGVGYRLVER 226 >gi|17548744|ref|NP_522084.1| putative two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430993|emb|CAD17674.1| putative two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 221 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD L ++ L+ +N D + FDAI+LDLGL D G Sbjct: 4 ILLIEDDLPLGTALARALRQAGYNTTWVRRLMDAQKWMTSNTFDAIVLDLGLPDGEGHLF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L ALR A+ PV I S ++ ++++GL GADD++ KPF +EL+AR+RA++RR G Sbjct: 64 LEALRAAQSDVPVIIASARDALSERLKGLDEGADDFLVKPFPVDELIARLRAVLRRHAGQ 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G L V K V G+ + LT +EYQ++ L R + +T+E ++ LY Sbjct: 124 STNRWSVGSLVVEPSQKRVTQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREG 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++V I LR KL G I+T+ G GY++ N Sbjct: 184 NRVSANALEVVIHHLRGKL-----GDGVIQTIRGVGYMIGGN 220 >gi|311064059|ref|YP_003970784.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310866378|gb|ADP35747.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 245 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 127/232 (54%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F+V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL +N D+ V G+ I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGYAIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLRE 223 + I++ +I LRKK+ G+ + IET G GY++RE Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIMVTDDNGEQHKVTPLIETKRGIGYMIRE 240 >gi|325661085|ref|ZP_08149712.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472592|gb|EGC75803.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium 4_1_37FAA] Length = 233 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 125/233 (53%), Gaps = 13/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +ILLIEDDK ++ ++ L EN+ V DG E C +++ F I+LDL + I Sbjct: 5 KILLIEDDKEISEMLKNYLTVENYEVIC---AYDGQEACDYFDRTDFSMILLDLMIPKIS 61 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V++ +R + P+ I+S S DK GL GADDYI+KPF+ E++ARI+A +RR Sbjct: 62 GMDVMQHIREHSV-VPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRR 120 Query: 119 SRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + Q + G+L +NL T+ G R+ LT KEY++++LL TKE Sbjct: 121 RNQYDQGSEDIPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + ++V I +LR K+ + YI TVWG GY L EN Sbjct: 181 QIYALVWKDTYLGDENAVNVHISRLRNKIEEDSRNPRYIITVWGIGYKLGENV 233 >gi|293602287|ref|ZP_06684734.1| two component response regulator IrlR [Achromobacter piechaudii ATCC 43553] gi|292819316|gb|EFF78350.1| two component response regulator IrlR [Achromobacter piechaudii ATCC 43553] Length = 229 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ LA ++ L N+ V V G G+ L + ++D I+LD+ L + GF Sbjct: 1 MKILVVEDERKLAEYLKRALSEHNYVVDVASDGVSGLHLARETQYDLILLDVMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + PV +L+ +ED+VRGLQ GADDY+ KPF EL+AR+ A+ RR R Sbjct: 61 DVLHELRKSD-RVPVLMLTARDKVEDRVRGLQDGADDYLVKPFALSELLARVLALGRR-R 118 Query: 121 GH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 GH Q+++ GDL ++L + G R+ LT KE+ ++ LL ++ L++ Sbjct: 119 GHIVAEASRQNVLKVGDLELDLLRRKASRAGTRLDLTAKEFTLLALLMRKQGEVLSRLDL 178 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D +++V + +LR K+ + K + TV G GYVL Sbjct: 179 AEQVWDINFNSNTNVVEVAVRRLRGKVDDPFETK-VLHTVRGMGYVL 224 >gi|222102367|ref|YP_002546508.1| two component response regulator [Agrobacterium vitis S4] gi|221739611|gb|ACM40313.1| two component response regulator [Agrobacterium vitis S4] Length = 225 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ + L S ++ G +G+ +D +I+D + + G Sbjct: 1 MKILVIEDDQTTRKYLVKGLSSAGHSIDCIGDGREGLSAGLDTRYDILIVDRMIPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++LR A + TPV L+ MS ++D+V GL++G DDY+ KPF ELVARI A+VRR Sbjct: 61 NLVKSLRAASVRTPVLFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELVARINALVRRPP 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ + + GDL ++L A+T G I L +E+ ++ELL + LTK MFL ++ Sbjct: 121 IAAEKTKLRVGDLEMDLVARTTSRAGQLIELLPREFSLLELLMRNEGRVLTKTMFLEKIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P+ +++ I +LR K+ + + + TV GY L Sbjct: 181 NFNFDPQSSVVETHISRLRAKI-DKPFSTSLLHTVKNTGYTL 221 >gi|324329030|gb|ADY24290.1| two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + H + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 225 >gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51] gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ +A +EL L E +NV G G+EL + FD I+LD+ L + G EV Sbjct: 9 ILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETGRFDLILLDVMLPKLNGTEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R + P+ +L+ S+ DKV GL SGA+DYI+KPF EEL+ARIR +R + Sbjct: 69 LRRIRRTS-AVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAPL 127 Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + +++ L ++ D +TV ++G + LT +E+ ++ L K L++E L +++ Sbjct: 128 SSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWGF 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +DV+I LR K+ K +I TV G GYV++++ Sbjct: 188 DFAGDTNAVDVYIRFLRGKIDEVFNLK-FIHTVRGVGYVIKDD 229 >gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum] gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 137/236 (58%), Gaps = 16/236 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDI 57 M+IL+++D++A+ S+ +S +FN Y L EDGI+ + + + +ILD+ + + Sbjct: 1 MKILVVDDEQAVRDSLR---RSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ IL+ ++ D+V GL +GADDY++KPF EEL+AR+R++VR Sbjct: 58 DGLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVR 117 Query: 118 RSRGHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RS + Q+L+ GDL+++ +++ V G I LT E+ +++LL + LT Sbjct: 118 RSAVESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLT 177 Query: 171 KEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + L ++ G D P ++V+I LR+K + G I TV G GYVLRE A Sbjct: 178 RAQILEEVW-GCDFPTSGNALEVYIGYLRRK-TELEGEDRLIHTVRGVGYVLRETA 231 >gi|257418638|ref|ZP_05595632.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257160466|gb|EEU90426.1| DNA-binding response regulator [Enterococcus faecalis T11] Length = 233 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 133/226 (58%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K LA +EL LK E + V G G+E E+DAI+LDL L ++ G EV Sbjct: 9 ILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLMLPELNGLEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-----VR 117 R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA+ + Sbjct: 69 CRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 127 Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + A Q+ I DL++ + + V I LT +EY+++ L N L +++ LN Sbjct: 128 GDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVLLN 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + G ++YI+TV G GYV+R Sbjct: 188 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 232 >gi|229098996|ref|ZP_04229931.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-29] gi|228684494|gb|EEL38437.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-29] Length = 230 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEKGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G+ + LT KE+++++L +N TK Sbjct: 124 STTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|207724242|ref|YP_002254639.1| response regulator protein for cobalt zinc cadmium resistance [Ralstonia solanacearum MolK2] gi|206589458|emb|CAQ36419.1| response regulator protein for cobalt zinc cadmium resistance [Ralstonia solanacearum MolK2] Length = 224 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L++ED+ + +LK + +V DL G DG+ +++D I+LD+ L + Sbjct: 1 MRLLIVEDEPKAG---DYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++V+R LR K TPV L+ + D+++GL+ GADDY+ KPF ELVAR+R I+R Sbjct: 58 DGWQVIRELRRRK-PTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ DLS++ + V G RI LT KEY ++ LL+ R L++ + + Sbjct: 117 RGPMRESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + ++DV I +LR K+ + K I T+ G GYVL A+ Sbjct: 177 VWDVNFDSNTNVVDVAIRRLRAKVDDPFEHK-LIHTLRGMGYVLDTVAR 224 >gi|218528425|ref|YP_002419241.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218520728|gb|ACK81313.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] Length = 232 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + V G DG L + ++D +I+D L + G Sbjct: 1 MRLLIIEDDREAAAYLVKAFREAGHAVDHAGGGLDGYALAREGDYDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++R+LR I+TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR + RR Sbjct: 61 SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120 Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G +++ GDL ++ + V G I L +E++++E L +T+ M L Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 H++D +P+ +IDV + +LR K+ I TV G GYV+R + Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRAKIDRGF-EHPMIHTVRGAGYVIRAD 227 >gi|228948817|ref|ZP_04111093.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810874|gb|EEM57219.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 222 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I L E + +G+ + ++D IILD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 61 CRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCN 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + H + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIRNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GHNVVVNPNVVDLYIGYIRKKLKCEKKNR-YIQTIHGRGYSMVE 222 >gi|254251535|ref|ZP_04944853.1| DNA-binding response regulator [Burkholderia dolosa AUO158] gi|124894144|gb|EAY68024.1| DNA-binding response regulator [Burkholderia dolosa AUO158] Length = 251 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+S+ F V GE + +D ++LDLGL G Sbjct: 32 MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGEAALTALGGEAYDLLLLDLGLPKRDGI 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR ++ PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 92 DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 151 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++SLI G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 152 GRSESLIRHGTLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 211 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL G + I V G GY++ Sbjct: 212 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 247 >gi|218906286|ref|YP_002454120.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218535301|gb|ACK87699.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 225 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLMEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K+ TPV I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVKM-TPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+ I DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 225 >gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 4222] gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar sotto str. T04001] gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar sotto str. T04001] gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 4222] Length = 241 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE G++ FD +ILD+ + + G EV Sbjct: 16 ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLDGLEV 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 76 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 134 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G+ + LT KE+++++L +N TK Sbjct: 135 SATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 195 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 238 >gi|228942259|ref|ZP_04104798.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975189|ref|ZP_04135747.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981827|ref|ZP_04142122.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228777939|gb|EEM26211.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228784468|gb|EEM32489.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817303|gb|EEM63389.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942914|gb|AEA18810.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 225 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K +TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTDNVSSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQKEINFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D++I +RKKL + YI+T+ GRGY + Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSM 223 >gi|121593850|ref|YP_985746.1| two component heavy metal response transcriptional regulator [Acidovorax sp. JS42] gi|120605930|gb|ABM41670.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 227 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F + G DG+ L E+D +ILD+ L + G+ Sbjct: 1 MKILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I+RR R Sbjct: 61 QVLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ + DL ++L + V G RI LT KE+ ++ELL R L + + + ++ Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENA 225 D + + +I+V + +LR K+ K I+TV G GYVL ENA Sbjct: 181 DMNFDSDTNVIEVAMRRLRLKIDEGQDVK-LIQTVRGMGYVLEAPENA 227 >gi|319950313|ref|ZP_08024232.1| putative OmpR family two-component response regulator [Dietzia cinnamea P4] gi|319436005|gb|EFV91206.1| putative OmpR family two-component response regulator [Dietzia cinnamea P4] Length = 235 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++D+ AL S+ L + ++V GE G+E+ +FD ++LD+ + G+ Sbjct: 1 MRVLVVDDEPALRESLRRGLAAGGWSVETAPDGEAGLEMACGDDFDVVVLDIMMPRRSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R I TPV +L+ D+ GADDY+ KPF+ L AR+RA+VRR Sbjct: 61 EVVREMRQRGIWTPVLMLTAKDGEYDEADAFDLGADDYLVKPFSFVVLEARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL V+ A+ V RI +T +EY ++E L +N ++K + ++D Sbjct: 121 PERPATFEAGDLVVDPAAREVRRGDTRISVTAREYAVLEYLIRNRNQVVSKAQIMRAVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I++V++ LR+K+ +A G + IETV G+GY L Sbjct: 181 SAYDGDDNIVEVYVGYLRRKI-DAPFGAHAIETVRGQGYRL 220 >gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931] gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931] Length = 234 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 129/225 (57%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G + IE + + D I+LD+ + + GFE Sbjct: 6 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A + PV L+ + EDKV GL +G DDY++KPF+ +E++ARIRAI+RRSR Sbjct: 66 VTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSRN 125 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ DLS+N+D V + I L+ E+ ++ L L N L+K L+H+ Sbjct: 126 AQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 ++ + I++ +I LR+K+ +N G + I T G GY++R Sbjct: 186 WEYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMIR 230 >gi|296104675|ref|YP_003614821.1| two-component system, OmpR family, response regulator QseB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059134|gb|ADF63872.1| two-component system, OmpR family, response regulator QseB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 219 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDDK + I+ L F+V + TD LC +DA++LDL L +I G Sbjct: 1 MRILLVEDDKLIGDGIKAGLSKMGFSVDWFTDGKTGQAALCS-APYDAVVLDLTLPEIDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +LRA R + S PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A+VRRS Sbjct: 60 LAILRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +S + G ++++ + ++G + L KE+ ++ELL L ++ LY Sbjct: 120 HGQTRSELRHGKVTLDPTSLIATLEGETLALKPKEFALLELLMRNAGRVLPRKAIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V + LR+KL G +I TV G GY L Sbjct: 180 TWDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216 >gi|193213480|ref|YP_001999433.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] gi|193086957|gb|ACF12233.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] Length = 220 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + ++ + LK + V G++ + ++ E A++LDLGL G Sbjct: 1 MRVLLVEDDAMIGEAVCVALKDAAYAVDWVRRGDEAADALRYGEHQAVLLDLGLPGRGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR S PV I++ + +++ GL SGADDY+ KPF+ +EL+AR+RA++RR Sbjct: 61 ELLAGLRQQGSSIPVIIITARDGLSERIAGLDSGADDYLVKPFDLDELLARLRAVIRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A LI G ++++ T R L+ +E+ ++ L L+ L++ +Y Sbjct: 121 GQASGLIGNGQITLDPATHTAFCGESREVLSSREFAVLHALLLQPGRILSRSALEERVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E E ID I +LRKKL A+ I+ + G G+++ Sbjct: 181 WDEEVESNAIDYLIHQLRKKLGAAS-----IKNIRGAGWMV 216 >gi|183984600|ref|YP_001852891.1| two-component response transcriptional regulatory protein PrrA [Mycobacterium marinum M] gi|183177926|gb|ACC43036.1| two-component response transcriptional regulatory protein PrrA [Mycobacterium marinum M] Length = 236 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G + + DAI+LD+ + + G V+ ALR P Sbjct: 25 SLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 84 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR A S I G Sbjct: 85 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGP 144 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 L V++ + V G + LT +E+ ++ +L+ K L++ L ++ + ++D Sbjct: 145 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 204 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 VFI LR+KL A GG + TV G G+VLR Sbjct: 205 VFIGYLRRKL-EANGGPRLLHTVRGVGFVLR 234 >gi|77361935|ref|YP_341509.1| transcriptional activator of copper resistance (two-component regulatory system with CusS) [Pseudoalteromonas haloplanktis TAC125] gi|76876846|emb|CAI89063.1| transcriptional activator of copper resistance (two-component regulatory system with CusS) [Pseudoalteromonas haloplanktis TAC125] Length = 228 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 134/229 (58%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L F V + G DG L FD IILD+ L D+ G+ Sbjct: 1 MRILIVEDEIKTGDYLKQGLTEAGFQVCLARNGLDGHHLAMTELFDVIILDIMLPDVSGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ++R AK TPV LS S++D+V+GL+ GADDY+ KPF E++AR+R ++RR Sbjct: 61 RILESVREAKNDTPVLFLSARDSVDDRVKGLELGADDYLIKPFAFSEVLARVRTLIRRGG 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I+T DL +++ + ++ G RI L+ KE+ ++ELL R+ L++ + + ++ Sbjct: 121 VQKVADILTIADLEMDIPKRKIQRAGKRILLSNKEFSLLELLLRREGEVLSRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKD 227 D E + +IDV I +LR K+ + K I TV G GY L ENA++ Sbjct: 181 DMNFESDTNVIDVAIRRLRGKVDDEYSIK-LIHTVRGMGYKLEVENAQN 228 >gi|83942173|ref|ZP_00954635.1| two component transcriptional regulator, winged helix family protein [Sulfitobacter sp. EE-36] gi|83847993|gb|EAP85868.1| two component transcriptional regulator, winged helix family protein [Sulfitobacter sp. EE-36] Length = 218 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 119/222 (53%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIED+KALA ++ L+++ V + L E L + +D ++LDL L D G Sbjct: 1 MRILLIEDEKALARPLKEHLEADLHIVEWFCTLDEADAAL-RTLSYDVVLLDLQLPDGDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + L LR I TP+ IL+ + D++ GL GADDY+ KPF+ +E+ ARI + RRS Sbjct: 60 LDFLSKLRAKAIRTPILILTARDKVSDRIEGLNRGADDYVIKPFDLDEVKARIHTVCRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ D+ VNL TV + LT KE+ + E L RK + KE +Y Sbjct: 120 ANQFAQMVQLHDVVVNLSDHTVMRAEQPVRLTAKEWGVFETLLRRKPQIVPKESLEAAIY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +E E I+V I +LR KL GK+ I T G GY L Sbjct: 180 DYGEEVESNAIEVHISRLRTKL-----GKDLIATHRGLGYAL 216 >gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] Length = 234 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G+ EL FD IILD+ L ++ G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKPFDFIILDVMLPNMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR KI TP+ +L+ D++ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLEP 122 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ ++ G + +L V V G +I LT KE++++ RK + ++ Sbjct: 123 RQQTREEDQPAEILQVGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRDT 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LN +++ + + +I+DV I LR+KL Y+ TV G GY +E Sbjct: 183 LLNRIWNFDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKFQE 232 >gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL F2-208] gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A] Length = 246 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 135/236 (57%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G Sbjct: 12 VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 72 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 131 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 132 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 191 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 192 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 246 >gi|296169659|ref|ZP_06851277.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895656|gb|EFG75352.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 236 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G + + DAI+LD+ + + G V+ ALR P Sbjct: 25 SLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 84 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR A S I G Sbjct: 85 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGP 144 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 L V++ + V G + LT +E+ ++ +L+ K L++ L ++ + ++D Sbjct: 145 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 204 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 VFI LR+KL A GG + TV G G+VLR Sbjct: 205 VFIGYLRRKL-EANGGPRLLHTVRGVGFVLR 234 >gi|266619604|ref|ZP_06112539.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288868826|gb|EFD01125.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 229 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++++A + L+ F V + + GE G+ +FD +ILDL L + GFE Sbjct: 3 RILIIEDEESIAELEKDYLELSGFEVEIENDGEAGLAKALHEDFDLLILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICRKVREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S ++ L ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGSGTPDNEIVEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|254390598|ref|ZP_05005812.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812195|ref|ZP_06770838.1| Two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440649|ref|ZP_08215383.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704299|gb|EDY50111.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324794|gb|EFG06437.1| Two component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 220 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A +E L++ F V G+ + FD I+LD+GL GF Sbjct: 3 RILIVEDEERIASFVEKGLRANGFTTTVVGDGDSAFDYAVTGGFDLIVLDIGLPGRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 VLR LR A++S PV IL+ S+ D V GL+ GADD+++KPF EEL+AR+R +R +R Sbjct: 63 VLRQLREARVSVPVIILTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G+LS++L + + LT +E+ ++EL L++E L+H++ Sbjct: 123 APEVTVLRNGELSLDLRTRRARSGERTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ LRKKL G +ETV G GY L Sbjct: 183 YDFDPGSNIVDVYVRALRKKL-----GAGRVETVRGMGYRL 218 >gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] Length = 240 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 129/225 (57%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G + IE + + D I+LD+ + + GFE Sbjct: 12 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A + PV L+ + EDKV GL +G DDY++KPF+ +E++ARIRAI+RRSR Sbjct: 72 VTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSRN 131 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ DLS+N+D V + I L+ E+ ++ L L N L+K L+H+ Sbjct: 132 AQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 ++ + I++ +I LR+K+ +N G + I T G GY++R Sbjct: 192 WEYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMIR 236 >gi|296103876|ref|YP_003614022.1| two-component system, OmpR family, response regulator TctD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058335|gb|ADF63073.1| two-component system, OmpR family, response regulator TctD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 224 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L E F V G L + + ILD+G+ G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQEGFAVDCVSDGRAADHLLQGENYAVAILDIGMPGFDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ LR + PV L+ S++ D+V+GL +GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 EVVHRLRKRGQTLPVLFLTARSNVADRVKGLNAGADDYLPKPFELEELDARLRALLRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q G+L + D + ++ + LT +E ++++L R+ ++++ + ++ Sbjct: 121 GRTQERQRLGELEYDDDGFFL-LRDEPLSLTPRELSLLKVLMHRRTRPVSRQQLFDQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ + +D++I +LRKKLS G I T+ G GYVL Sbjct: 180 LNDDVSPESLDLYIHRLRKKLS---GSGVRITTLRGLGYVL 217 >gi|229093633|ref|ZP_04224733.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-42] gi|228689720|gb|EEL43527.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-42] Length = 230 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + I GDL+++ TVE +G + LT KE+++++L +N TK Sbjct: 124 SATETTEKTIQIGDLTIDPINFTVEKKGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|70730633|ref|YP_260374.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68344932|gb|AAY92538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 233 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD AL+ I L+ + V V G+ E K D +ILDL L + G +V Sbjct: 4 ILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASPPDLVILDLMLPGLDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R LR + P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RRS Sbjct: 64 CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLS 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A I+ G+L ++L +TV + + L+ EY ++ +L+ L+++ L L Sbjct: 124 EPQSASDQILMGNLCIDLSERTVTWREQLVELSSGEYNLLVVLARHAGEVLSRDQILQRL 183 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G D + +DV I KLR+K + AG I+TVWG+GY+ Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLF 226 >gi|21232781|ref|NP_638698.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767145|ref|YP_241907.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21114601|gb|AAM42622.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572477|gb|AAY47887.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 233 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED+ LA +I ++ + D +DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSG---HAVDWQQDGLAAASVLRYQSFDLVVLDIGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++R Sbjct: 58 DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG A ++ G + A TV + G I L +EY+++E+L R + K+ N Sbjct: 118 RNRGQASEVVQLGAFVFDNAAHTVSLDGVAIELPNREYRLLEILIGRLGQVVGKDEIGNG 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L+ D+ I++++ +LR+KL +A I TV G GY L E E Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLIDA---PLRIVTVRGAGYKLEEADPQAVTE 228 >gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 237 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD + I L E F V + G++G ++ +FD +ILD+ L ++ G E Sbjct: 7 KILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIMLPEMNGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +A+R P+ L+ + S E+ GL SGADDY++KPF EL+AR+++++RRSR Sbjct: 67 ICKAVREENTHVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRRSRN 126 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ D+ VN +KTV G +I LT EY+++ +++ L + Sbjct: 127 FNSNIPDNSYRFSDIKVNDSSKTVTRNGKKIALTSTEYKLLLAFLKAPGRVISRTELLEN 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + ++DV++ LRKKL + I TV G GYVL+E+ +D Sbjct: 187 VWGVNYDIGTNVVDVYVNYLRKKLEKENNDR-LIHTVIGMGYVLKEDDED 235 >gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC 29176] gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC 29176] Length = 233 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 11/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GED + Y+ + I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTKMVYNGEDALAAFDTYQPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK TP+ +LS S + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + Sbjct: 66 VCREIR-AKSVTPIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLRRYQV 124 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ + L++NL +V G + + KE +++ L+ N T+E Sbjct: 125 GRQAEPAREKTKCVEYEGLTINLTNYSVLCDGKNVEMPPKELELLYCLAASPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 LLDRIWGYEYIGDTRTVDVHIKRLREKIKDHPHWS--LSTVWGIGY 228 >gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 230 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++IEDD ++ ++L L E ++V GE G+ L K D +++D+ L + G E Sbjct: 4 KIVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTERPDLVLVDVMLPRLGGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V+R +R P+ ILS DKV GLQ GADDY+ KPF +EL+ARI A++RR R Sbjct: 64 VVREIRKTDPELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALLRRRRS 123 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G +++ G + ++L+A+ V G + LT +EY ++ + ++E + Sbjct: 124 RGETGPNRAVRKVGQIELDLEARRATVGGSTLDLTSREYDLLAFFVTHPDRVFSREQLME 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + +D FI +LR + + A ++ETV G GY Sbjct: 184 NVWGSRYFGTARTVDNFIARLRAHIGDDAERPRHLETVRGVGY 226 >gi|53718414|ref|YP_107400.1| response regulator transcription regulatory protein [Burkholderia pseudomallei K96243] gi|126452265|ref|YP_001065094.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|254261284|ref|ZP_04952338.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|52208828|emb|CAH34767.1| response regulator transcription regulatory protein [Burkholderia pseudomallei K96243] gi|126225907|gb|ABN89447.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|254219973|gb|EET09357.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 247 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 222 >gi|167758624|ref|ZP_02430751.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704] gi|167663820|gb|EDS07950.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704] Length = 229 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A + L+ F V V + GE G++ EFD ILDL L I GFE Sbjct: 3 KILIVEDEEAIADLEKDYLELSGFKVEVANDGETGLKKALGEEFDMFILDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQIRDKK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S A +I L ++ A+ V V T KE+ ++ L+ N TKE Sbjct: 122 LTGSAVEANKVIEIRGLKIDTTARRVWVNEEERTFTTKEFDLLTFLASHPNHVYTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRFK 228 >gi|167585588|ref|ZP_02377976.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 220 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MRILL+EDD+ +A + L+S+ F V D +DG +A L L +P Sbjct: 1 MRILLVEDDRMIAEGVRKALRSDGFAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKR 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLR LR ++ PV I++ +I D+V+GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGIDVLRTLRARGLALPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G ++SLI G L+++ + V + G + L+ +E+ ++E L R L+K Sbjct: 118 RQAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y +E ++V+I LRKKL G + I V G GY++ Sbjct: 178 MYGWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 216 >gi|228930116|ref|ZP_04093126.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936367|ref|ZP_04099165.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823199|gb|EEM69033.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829615|gb|EEM75242.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 222 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I L E + +G+ + ++D IILD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 61 CRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCN 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + H + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GHNVVVNPNVVDLYIGYIRKKLKCEKKNR-YIQTIHGRGYSMVE 222 >gi|268589246|ref|ZP_06123467.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131] gi|291315431|gb|EFE55884.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131] Length = 224 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL++ED+ L H + + LK V D ED E F D ++DLGL D Sbjct: 1 MRILIVEDNALLRHHLTVQLKDLGHQV---DSAEDAKEADYFLHESCPDIAVVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +++ R ++ P+ +L+ S ++KV+ L SGADDY++KPF EELVAR++A++R Sbjct: 58 DGLSMIKRWRGEHVNIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A ++ G+ ++L K V G + LT EY +IE L ++K+ + Sbjct: 118 RNSGLASQVLELGNFVIDLSRKEFTVNGETVKLTAFEYTIIETLLRNNGKVVSKDSLMRQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQFH-SDDVIVTVRGQGY 218 >gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 229 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + + L+ + V GE+ +E K E+D I+LDL L + G E Sbjct: 4 KVLVVDDEKLIVKGLRFSLEQDGMEVDCAYDGEEALEKAKAGEYDIILLDLMLPKMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R + P+ +L+ DK+ GL+ GADDY++KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQIREFS-NVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAIIRRAGS 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + G+L ++ + + V + G I+LT KE+ ++ELL N ++E LN Sbjct: 123 KQDKQEKAKTVEVGELKLDCEGRRVFISGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ Y+ T WG GY + Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYFQ 228 >gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B] gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B] Length = 239 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI++I+D + I L+ E + V + E +E K E D ++D+ L + GFE Sbjct: 5 RIMVIDDQPEILELISFTLEKEGYEVVPVEDAEKALEEIKDKEIDMFLVDIMLPGMDGFE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +R +R + STPV LS DKV GL+ GADDYI+KPF+ EL+ARI+A+ RR Sbjct: 65 FVRNIRSQEKYKSTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRRM 124 Query: 120 RGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q IV DL +++D V+++G +++LT E+ ++ L+ + ++ + Sbjct: 125 QLSTQVKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRNV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K+E Sbjct: 185 LLDKLWGYDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKFRDPGKEE 239 >gi|218899692|ref|YP_002448103.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218541203|gb|ACK93597.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 230 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE G++ FD +ILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G+ + LT KE+++++L +N TK Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|163758090|ref|ZP_02165178.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43] gi|162284379|gb|EDQ34662.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43] Length = 223 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ + + L +E +++ G G+E + +FDAIILDL L + G Sbjct: 1 MKLLVVEDDERIWQFLFRGLSAEGYSLTWEANGRAGLETARREQFDAIILDLMLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R LR +ST + +L+ + + D V+GL+ GADDY+SKPF +EL AR+ + R Sbjct: 61 EICRRLRAEGVSTKILMLTALETTADLVKGLRMGADDYLSKPFAFDELTARLEVLTRGLP 120 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q ++ G L ++ A E G + LT E+ ++ELL + +T+ L + Sbjct: 121 ATRQPPHILSAGLLQLDTAAVQSEFDGVPVALTSLEHGLLELLMEERGKVVTRARILKRV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P +IDV++ +LR KL +AG + I TV GRGY L Sbjct: 181 WGTDQDPLTNVIDVYVRRLRSKL-KSAGAPDMITTVRGRGYRL 222 >gi|114763733|ref|ZP_01443127.1| transcriptional regulator, winged helix family protein [Pelagibaca bermudensis HTCC2601] gi|114543734|gb|EAU46747.1| transcriptional regulator, winged helix family protein [Roseovarius sp. HTCC2601] Length = 222 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 13/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + + L+ F+ + + D F+A++LDL L D G Sbjct: 1 MRILIVEDDAVLGDGLSVGLRLSGFSPELVETCADARHAIAMEGFEAVVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR + PV +L+ ++D+V GL +GADDY+ KPF EL AR+RA+ RR++ Sbjct: 61 ELLRELRQSGSDMPVLMLTARDGLDDRVTGLDAGADDYLGKPFELPELSARLRALTRRAQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR----IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A++L+ L+++ T + G R I + +EY ++ L R + L+K Sbjct: 121 GRAENLLHWNGLALD----TARMSGRRGPEEIAFSRREYTVLAALMERPGSILSKATLEE 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LY +++ E ++V + LR KL G +I+TV G GY L A Sbjct: 177 RLYGWQEDIESNTVEVHVHHLRAKL-----GSGFIQTVRGAGYRLAPEA 220 >gi|17351934|gb|AAL38203.1|AF319447_1 putative response regulator RR96 [Listeria monocytogenes] Length = 232 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 7 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 67 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 126 Query: 123 AQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +Q+ V +G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 127 SQAEPVVKIKSSGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFEK 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL A GG+N I+T+WG GY Sbjct: 187 IWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 228 >gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 283 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + V G + + + DA++LD+ L D+ G Sbjct: 56 VRVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGL 115 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 116 AVLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 175 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G +S + GDL ++ D+ V G IH+T E++++ L L+K L Sbjct: 176 SAVAAGRGESTLTVGDLVLDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQIL 235 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ + +++++I LRKK+ AG I T G GY+++ Sbjct: 236 DRVWNYDFGGQANVVELYISYLRKKID--AGRTPMIHTRRGAGYLIKPG 282 >gi|239942785|ref|ZP_04694722.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989244|ref|ZP_04709908.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 248 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + V G + + + DA++LD+ L D+ G Sbjct: 21 VRVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGL 80 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 81 AVLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 140 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G +S + GDL ++ D+ V G IH+T E++++ L L+K L Sbjct: 141 SAVAAGRGESTLTVGDLVLDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQIL 200 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ + +++++I LRKK+ AG I T G GY+++ Sbjct: 201 DRVWNYDFGGQANVVELYISYLRKKID--AGRTPMIHTRRGAGYLIKPG 247 >gi|229506825|ref|ZP_04396334.1| DNA-binding response regulator [Vibrio cholerae BX 330286] gi|229510381|ref|ZP_04399861.1| DNA-binding response regulator [Vibrio cholerae B33] gi|229517488|ref|ZP_04406933.1| DNA-binding response regulator [Vibrio cholerae RC9] gi|229605298|ref|YP_002876002.1| DNA-binding response regulator [Vibrio cholerae MJ-1236] gi|229345524|gb|EEO10497.1| DNA-binding response regulator [Vibrio cholerae RC9] gi|229352826|gb|EEO17766.1| DNA-binding response regulator [Vibrio cholerae B33] gi|229357176|gb|EEO22094.1| DNA-binding response regulator [Vibrio cholerae BX 330286] gi|229371784|gb|ACQ62206.1| DNA-binding response regulator [Vibrio cholerae MJ-1236] Length = 247 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L S+++ L + + V + G + K +F A+ILDL L D+ G Sbjct: 30 MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 89 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A + PV IL+ I D+V+GL GAD+YI KPF EEL+AR+R I+RRS Sbjct: 90 EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 149 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ LI G+L ++L + + + LT EY+++ L + ++KE+ L+ Sbjct: 150 GSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 209 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V I LRKKL + N ++ V G GY++ Sbjct: 210 WDEGSSDNAIEVHIHNLRKKLPD-----NLVKNVRGVGYMI 245 >gi|222111390|ref|YP_002553654.1| winged helix family two component heavy metal response transcriptional regulator [Acidovorax ebreus TPSY] gi|330825948|ref|YP_004389251.1| two component heavy metal response transcriptional regulator [Alicycliphilus denitrificans K601] gi|221730834|gb|ACM33654.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] gi|329311320|gb|AEB85735.1| two component heavy metal response transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 228 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 129/230 (56%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ LA + L E + V V G DG+ L +D I+LD L I G Sbjct: 1 MKLLIVEDEIKLAEYLRKGLSEEGYVVEVAHNGVDGLHLAMEGAYDLIVLDGMLPGIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR ++ TPV +L+ +ED+VRGL++GADDY+ KPF ELVARI +++RS Sbjct: 61 GVLAALRQSR-QTPVLMLTARMRVEDRVRGLKAGADDYLVKPFAFTELVARIEVLLKRSH 119 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H + DL ++L + VE G R++LT KE+Q++ LL R+ L++ Sbjct: 120 PLPASHEALTLAIDDLHMDLVRRRVERAGKRLNLTAKEFQLLSLLLRRQGEVLSRAEIAE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + +IDV I +LR K+ + + + TV G GYVL AK Sbjct: 180 QVWDVNFDHGTNVIDVAIRRLRAKM-DTPFDRPLLHTVRGMGYVLEARAK 228 >gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua Clip11262] gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua Clip11262] Length = 236 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G Sbjct: 2 VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K+ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 62 EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 122 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 236 >gi|312129843|ref|YP_003997183.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311906389|gb|ADQ16830.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 230 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD +A +I L + F+ + G+ G++L +D I+LDL L ++ G+E Sbjct: 6 KILIVEDDLRIAQNISKGLMEKGFDTEIAYDGKIGVKLAISNPYDLILLDLNLPELNGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R K S P+ +L+ + EDK+ G + GADDY+ KPF+ EL+ARI ++R+ G Sbjct: 66 VCSEVRKRKPSIPIIMLTALGETEDKIEGFERGADDYLVKPFDFRELLARINVFIKRNAG 125 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + +L ++LD KTV G +I LT KE+ ++E L K ++K + L Sbjct: 126 AGASQENTLKIANLVMDLDGKTVMRDGVKIDLTPKEFSLLEYLIKNKGKVVSKAEISSAL 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++ + +++V+I LRKK+ K I T G GY++ E Sbjct: 186 WEPNNQQSLNVVEVYINFLRKKIDKDFIPK-LIHTKTGMGYIIAE 229 >gi|326204759|ref|ZP_08194614.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985130|gb|EGD45971.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 232 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ A+ EL+LK E F V + G GI + D ++LDL L D G++ Sbjct: 3 KILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + + V + + PV ++S DKV GL+ GA+DYI+KPF+ EL+ARI+ ++RR Sbjct: 63 LCKEI-VKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYEH 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + +V G+L +N D K V+ G +I LT KEY ++E L R T++ L Sbjct: 122 NDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDELL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + +D+ I +LRKK+ + Y++T++G GY L Sbjct: 182 EIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQL 227 >gi|226313242|ref|YP_002773136.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226096190|dbj|BAH44632.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 234 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 12/226 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDIP 58 I +IEDD+A+ +E L E + V V G++G L KF + FD +++DL + I Sbjct: 8 IFIIEDDQAIVEMVETYLTKEGYAVTVAGDGDEG--LRKFEQAQGRFDLLLVDLMMPKID 65 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV+R +R A P+ I+S S DK GL GADDYI KPF+ EL AR++AI+RR Sbjct: 66 GMEVIRRIR-AYSHVPILIMSAKDSDIDKALGLGFGADDYIEKPFSMIELSARLKAIIRR 124 Query: 119 SRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +A + + GDL ++ D+ V Q I LT KE++++ L + N TK Sbjct: 125 ATQYASVETKHNTLNMGDLRIDFDSFAVFKQEEPIKLTSKEFEILRLFAAHPNRVFTKAQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + +I+V + +LR K+ + YI+T+WG GY Sbjct: 185 IYAKVWNDDYYGDENVINVHMSRLRDKIEDNPSEPRYIKTLWGIGY 230 >gi|71901162|ref|ZP_00683267.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71729084|gb|EAO31210.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] Length = 231 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 129/237 (54%), Gaps = 12/237 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MR+LLIED+ LA +I ++ +V D DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLIEDNADLADAIIRRMRRHG---HVVDWQSDGLAAAGVLRYQRFDLVVLDIGLPSL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L LR +TPV IL+ +IED+V L GADDY+SKPF+ E AR R ++R Sbjct: 58 DGLQLLSELRQRGDTTPVLILTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG+A ++ G + A + + G I L +EY+++E+L R + K+ N Sbjct: 118 RNRGNASEVVRIGGFEFDNAAHRIRLNGEPIKLPNREYRLLEILIARLGQIVGKDEIGNS 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKDETCE 231 L++ D I++++ +LR+KL A I TV GY+L E E C+ Sbjct: 178 LFNFDDNAGPNAIELYVARLRRKLEAA---PLRIVTVHRAGYLLEPIVEARGHEACD 231 >gi|332829361|gb|EGK02015.1| hypothetical protein HMPREF9455_00137 [Dysgonomonas gadei ATCC BAA-286] Length = 224 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + SI L SE++ V GIE + YE+D I+LD+ L G Sbjct: 1 MKILIVEDEYEILKSINSFLLSESYVVEKATDYASGIEKVQLYEYDCILLDISLPGGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L ++ A I+ I+S +S+EDK+ GL GADDY++KPF+ EL ARI+A++RR + Sbjct: 61 KILEEMKKAGITGNTIIISAKNSLEDKITGLDLGADDYLTKPFHLAELHARIKAVLRRKQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 +++ G++SV+ D V + + L KE+ ++ ++ N +TKE+ H++ Sbjct: 121 LDGSNVLKLGNVSVDFDKHLVYIDDQELRLNRKEFDILSFFAMNTNKLITKEVLAEHVWG 180 Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D D + + I LRKKL ++ G + E V+G GY Sbjct: 181 DNIDSADNFDFVYAQIKNLRKKLKDSNAGIMF-ENVYGIGY 220 >gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 219 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 137/226 (60%), Gaps = 13/226 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 RIL++ED+ A+++ I++ L + Y D DG E E FD I+LD+ L +I Sbjct: 3 RILIVEDEPAISNLIQMNLAAAG---YCCDCAFDGAEAADRLEQEGFDLILLDIMLPEID 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+E++ +R +I PV L+ ++ EDKV+GL++GADDY++KPF EL+AR+ ++RR Sbjct: 60 GYELMDYIRPLEI--PVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRR 117 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S + GDL +++ A+ V+ QG ++LT KEY+++ LL KN L ++ + Sbjct: 118 CQ-KTESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKI 176 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +D+ + +LRKK+ G ++ I+TV+ GY L ++ Sbjct: 177 WGSGYMGDSRTVDLHVQRLRKKI----GWEHKIKTVYKVGYRLEDS 218 >gi|313884757|ref|ZP_07818512.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] gi|312620018|gb|EFR31452.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] Length = 232 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 130/228 (57%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPG 59 MR+L+++D+K + + + LK+E+++V G + ++L K + D ++LD+ + G Sbjct: 1 MRVLVVDDEKEIVELLTIYLKNESYDVLQAFDGVEALDLIAKNDDIDLVLLDIMMPKKNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL +R ++ PV L+ ++ DK+ GL +GADDY++KPFN E++ARI+++ RR Sbjct: 61 LEVLEEIRKQGLNFPVIFLTAKATDTDKITGLFAGADDYVAKPFNPLEVIARIKSLFRRQ 120 Query: 120 RGHAQ-------SLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + Q S + G +++ D+ TV + G + LTG E+ ++ LL+ N + Sbjct: 121 QLLNQPPQAKDTSKVEVGSITIEKDSHTVTTLSGQDVQLTGSEFDILYLLATHLNQVFSA 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L ++ ++P + + V + LR KL A G+ ++TVWG GY Sbjct: 181 EDILQEVWPEGNKPSSQTVMVHVSHLRDKLEAATNGEKIVKTVWGLGY 228 >gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 258 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 24 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 83 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 84 TRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 143 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL +N D+ V G + L+ EY+++ L + L+K L+H++ Sbjct: 144 VEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 203 Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223 + I++ +I LRKK + + GGK IET G GY++RE Sbjct: 204 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIRE 255 >gi|261346186|ref|ZP_05973830.1| DNA-binding response regulator TctD [Providencia rustigianii DSM 4541] gi|282565842|gb|EFB71377.1| DNA-binding response regulator TctD [Providencia rustigianii DSM 4541] Length = 222 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 129/223 (57%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED + L+ ++ L + F V + D G +L + ++ ++LD+ L + G Sbjct: 1 MRMLLVEDHEELSLWLQKALTASGFAVDIADDGYIADQLLQTEDYSLVVLDVSLPRMNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL ++R + TPV +L+ S + D+V+GL +GADDY++KPF+ EL ARIRA++RRS Sbjct: 61 EVLASMRKRQQETPVLLLTANSDVSDRVKGLNAGADDYLTKPFDIAELEARIRALLRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ GDL + D + ++ + LT +EY ++ L R+ ++K ++ Sbjct: 121 GNINESQCYGDLCFHDDGYFL-LRAEPLGLTPREYAVLNTLFHRRGRPVSKTQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE ++ I++++ ++RKKL AG I T+ G GY L + Sbjct: 180 LSDEANLQSIELYVHRVRKKL---AGSDVNINTLRGLGYRLEQ 219 >gi|256374532|ref|YP_003098192.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255918835|gb|ACU34346.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 233 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ +A + + + E + GE I ++ D ++LDL L D+ GF Sbjct: 7 VRLLVVDDEPHIADLVATVARYEGWQAVTAGSGEAAIRAALDFQPDIVVLDLMLPDVDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ D+V GL G DDY+ KPF+ EEL+AR+RA++RRS Sbjct: 67 TVLDRLRGEGAMVPVVFLTARDGTADRVAGLTRGGDDYLVKPFSVEELMARLRAVLRRST 126 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + +S++ DL ++ D + V + LT EY+++ L R T LTK L+H+ Sbjct: 127 GPSWKRSVLKVADLVLDEDTREVRRGDRLVTLTPTEYELLRYLMRRSPTVLTKAQILDHV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++++ + LR+KL + G + I TV G GYVLR Sbjct: 187 WEYDFGGRSNVVELVVSHLRRKL-DVEGDEPLIHTVRGVGYVLR 229 >gi|297531093|ref|YP_003672368.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297254345|gb|ADI27791.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 225 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED L ++ ML E F V G++G+ L + +DAIILD+ L I GF Sbjct: 1 MKLLVVEDHHDLREAMIEMLADE-FEVDGACDGDEGLFLAQQNIYDAIILDVMLPGIDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R LR I TPV L+ S+ED+V+GL G DDY+ KPF EL AR+RA++RRS Sbjct: 60 SIVRRLREDGIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQSPELKARLRALLRRSG 119 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I + + K V V G + LT K+Y+++E L + LTKE + ++ Sbjct: 120 ALTTKQTIRYRGIELFGKEKGVVVDGQPLKLTSKQYELLEYLVHNQGVILTKEQIFDRIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I++VF+ +LRKKL G I+TV G GY+L Sbjct: 180 GFDSDTTISIVEVFVHQLRKKL-EPFGYHADIQTVRGIGYML 220 >gi|220912548|ref|YP_002487857.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219859426|gb|ACL39768.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 240 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD L ++ + L + + V G + + D +ILDLGL D+ G + Sbjct: 19 RVLVVDDDPHLLKALRITLAAHGYAVDAASDGASALVAASRHAPDLLILDLGLPDMDGVD 78 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 VLR LR + ST PV +LS DKV L +GADDYI+KPF +EL+AR+RA+ RR Sbjct: 79 VLRDLR--RWSTLPVLVLSARHGSADKVGALDAGADDYITKPFGLDELLARLRALQRRVP 136 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ + SV+L A+ V+ G + LT E++++E+L L N +T++ L ++ Sbjct: 137 APEAAPVVASAAFSVDLAARRVDRGGSAVRLTPTEWKILEILVLNPNRLITQQQLLARVW 196 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + V++ +LR+KL AG ++ T G GY Sbjct: 197 GPGYVKEANYLRVYMAQLRRKLEADAGKPRHLLTEPGIGY 236 >gi|167844478|ref|ZP_02469986.1| two component transcriptional regulator, winged helix family protein [Burkholderia pseudomallei B7210] Length = 240 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 4 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 64 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 226 >gi|167822911|ref|ZP_02454382.1| two component transcriptional regulator, winged helix family protein [Burkholderia pseudomallei 9] Length = 241 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 4 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 64 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 225 >gi|121596283|ref|YP_988179.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120608363|gb|ABM44103.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 224 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L+ V +V E L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRTLRGSGAVVDHVASGTEVDTALLTNNEFDLLILDLGLPKMHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 LEVLKRLRGRGSALPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALTRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S I G L + + + G + L+ +E ++E+L R ++KE + L Sbjct: 121 MGGTSSAIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E I+V+I +LRKK+ G I TV G GY L Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIER---GPIRIATVRGLGYCL 219 >gi|107026097|ref|YP_623608.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692719|ref|YP_838252.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105895471|gb|ABF78635.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116650719|gb|ABK11359.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 248 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L IEDD+ A+ I L+ F V G DG+ EFD I LD L + G + Sbjct: 27 VLTIEDDEITANEIVTELEGRGFTVEWVANGRDGMARALGNEFDVITLDRMLPVVDGLAI 86 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L +R + TPV +LS + ++++VRGL++G DDY++KPF+ EE+ AR+ ++RRS+ Sbjct: 87 LTTMRSVGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSQAA 146 Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +V G L ++L ++ G I L EY+++E + T+T+ M ++ Sbjct: 147 PATFDTTLVVGPLKLDLISRKAFRDGEEIVLLPTEYRVLEYMMRNAGQTITRTMLFEAVW 206 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +I+V + +LR+K+ + + K I+TV G GY L Sbjct: 207 GYHFDPGTNLIEVHMGRLRRKI-DPSDAKQMIQTVRGAGYRL 247 >gi|167737322|ref|ZP_02410096.1| two component transcriptional regulator, winged helix family protein [Burkholderia pseudomallei 14] Length = 239 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 222 >gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 225 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD A++ + L+ E ++V V + G + +E K D ++LDLGL + G E Sbjct: 3 RVLLAEDDPAISEPLARALRREGYDVDVREDGAEALEGAKDNP-DLVLLDLGLPKVDGLE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S PV IL+ + D V GL +GADDY++KPF EL+AR+RA++RR+ Sbjct: 62 VCRRLRAEGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRT-- 119 Query: 122 HAQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + TG+L ++ D + +G + LT KE+ ++ +L + + +E + ++D Sbjct: 120 -PTDVGPTGELVRIDSDGRRAWFKGEELQLTAKEFDVLRVLIREQGKVVPREQLMREVWD 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 K +D+ I LR+KL + A YI TV G G+ D Sbjct: 179 TAWFGSTKTLDMHISVLRRKLGDDATSPQYIATVRGVGFRFERPKPD 225 >gi|298248013|ref|ZP_06971818.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550672|gb|EFH84538.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L S++ L+ ++ V + GED + + +D I+LD+ L + GF Sbjct: 1 MRILVVEDDPRLGPSLKKGLEKHHYAVDLALDGEDAVLMGTTTPYDLIVLDVLLPRLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR + + P+ +L+ + ++ +V GL +GADDY++KPF EL ARIRA++RR Sbjct: 61 EVCSQLRNHRRTMPILLLTALGELDHRVTGLDTGADDYLTKPFAFRELEARIRALLRRES 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + L + LD +T E +G R I L KEY ++E L L++ M H+ Sbjct: 121 TTKTAALCF--LDIMLDTRTHEARRGERMIPLNNKEYALLEYLMRHPRQVLSRTMIAEHV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D E +IDV+I LR+KL + I T+ G GY L+E A Sbjct: 179 WDCETEHLSNVIDVYIRYLRRKLCE-NHEPDVIHTIRGAGYQLKEPA 224 >gi|240136993|ref|YP_002961462.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Methylobacterium extorquens AM1] gi|254558845|ref|YP_003065940.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Methylobacterium extorquens DM4] gi|240006959|gb|ACS38185.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Methylobacterium extorquens AM1] gi|254266123|emb|CAX21875.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Methylobacterium extorquens DM4] Length = 232 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + V G DG L + ++D +I+D L + G Sbjct: 1 MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++R+LR I+TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR + RR Sbjct: 61 SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120 Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G +++ GDL ++ + V G I L +E++++E L +T+ M L Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 H++D +P+ +IDV + +LR K+ I TV G GYV+R + Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRAKIDRGF-EHPMIHTVRGAGYVIRAD 227 >gi|229158143|ref|ZP_04286211.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 4342] gi|228625305|gb|EEK82064.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 4342] Length = 230 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATEEIGKVIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|217419703|ref|ZP_03451209.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|237811008|ref|YP_002895459.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242314295|ref|ZP_04813311.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|217397007|gb|EEC37023.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|237506421|gb|ACQ98739.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242137534|gb|EES23936.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] Length = 273 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 27 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 87 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 147 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 249 >gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621] gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621] gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +IL+++DDK + + I + L++E T ED IE + E FD IILD+ + ++ Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 61 GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 Query: 119 SRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +S++ GDL+VN D + V ++G + LT KE+ ++ELL+ K L+ Sbjct: 120 FKKYNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVA 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 180 KIYEAVWKDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226 >gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM 20213] gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM 20213] Length = 243 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223 + I++ +I LRKK + + GGK IET G GY++RE Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIRE 240 >gi|222112512|ref|YP_002554776.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|221731956|gb|ACM34776.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 224 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L+ V +V E L EFD +ILDLGL + G Sbjct: 1 MRILIAEDDQVLADGLLRTLRGSGAVVDHVASGTEVDTALLTNNEFDLLILDLGLPKMHG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 LEVLKRLRGRGSALPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALTRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S I G L + + + G + L+ +E ++E+L R ++KE + L Sbjct: 121 MGGTSSAIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E I+V+I +LRKK+ G I TV G GY L Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIER---GPIRIATVRGLGYCL 219 >gi|307154731|ref|YP_003890115.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984959|gb|ADN16840.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 225 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ +A I LK + V + G+ G E+D IILD+ L I G Sbjct: 1 MRILLVEDEPGIAQFISQGLKETGYVVDIAPDGQQGKNYVDAVEYDIIILDIMLPKIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +R K+S P+ +L+ S+ED+V+GL GADDY+ KPF EL+ARIRA+ RR Sbjct: 61 KLLGEIRAKKVSVPILLLTARDSVEDRVKGLNQGADDYMVKPFAFSELLARIRALQRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL+++L + V+ I L+ E++++E L N LT+ +++ Sbjct: 121 LQFNTVLALGDLTMDLVTREVKRGDKLIDLSPLEFKLLEYLLRNCNQVLTRTQIGEQVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++DV++ LR+K+ + + TV G GY ++ Sbjct: 181 LDFYSNSNVVDVYVGYLRRKIDRGF-QRPLLHTVRGVGYCMK 221 >gi|113866571|ref|YP_725060.1| response regulator [Ralstonia eutropha H16] gi|113525347|emb|CAJ91692.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 229 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 124/222 (55%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD LA + L+ + V +VT+ G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDDVLADGLTRSLRHSGYAVDHVTN-GLEADSALSTQTFDLLILDLGLPRMSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ LR PV IL+ S++++V+GL GADDY++KPF EL AR+RA+VRR Sbjct: 60 LEVLKRLRARGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +L+ G L+ + + + + L+ +E ++E+L R ++KE ++HL Sbjct: 120 AGGGATLMRHGPLAYDQVGRIAYLNEQMLDLSAREIGLLEILLTRSGRLVSKEQLVDHLC 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E I+V++ +LRKK+ G I TV G GY L Sbjct: 180 EWGEEVSNNAIEVYVHRLRKKIEV---GGIRIATVRGLGYCL 218 >gi|88855871|ref|ZP_01130533.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814738|gb|EAR24598.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 242 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++EDD A+ ++ L+ + + V + G D + F A +D+ L ++ GF Sbjct: 19 LKILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGF 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R LR S PV +L+ ++ED+V GL SGADDY++KPF E ARIRA+VRR Sbjct: 79 EICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDT 138 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + G+L+ LDA TV G+ + ++ KE+ ++ +L+ LT+ L+ + Sbjct: 139 AAGKATLKIGELA--LDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEV 196 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++D ++ LR+KL G I TV G GY L Sbjct: 197 WGTTAHIDANVVDQYVSYLRRKLEPTQSGVT-ISTVRGVGYAL 238 >gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 230 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 13/237 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL++DD LA + L+ E F V G G+E D ++LD+ L I GF Sbjct: 1 MHILLVDDDAELASLLSEFLRREGFTVEAAHEGNRGLEKALQPGIDLVVLDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+L+ LR + PV +L+ D++ GL+ GADDY++KPFN EL ARIRAI+RR Sbjct: 61 EILKRLR-QRSKVPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRRYE 119 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + GH I T + ++ + V G +I LT E+ ++E+L L+++ Sbjct: 120 RDTPATGHR---IETNGIVLDPGTREVTAGGKKIELTTFEFDILEMLMRSAGRVLSRDAL 176 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + + Y+ + P + ID+ I LRKKL N G + I+T+ G GY +D E Sbjct: 177 MENFYNRKATPFDRSIDMHISHLRKKLEN---GDDLIKTIRGVGYQFCRTPEDAAAE 230 >gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC 12478] Length = 228 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 132/233 (56%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRIL+++DD+A+ S+ +S +FN Y +L DG+E DA++LD+ + + Sbjct: 1 MRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGLEALDMIASDRPDALVLDVMMPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 58 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 117 Query: 118 RSRGH--AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R++ A+S+ + DLS++ + V RI LT E+ ++E+L LT+ Sbjct: 118 RTKPDDTAESVAMRFSDLSLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 177 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 178 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 228 >gi|188591286|ref|YP_001795886.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424] gi|170938180|emb|CAP63166.1| putative response regulator, CheY family [Cupriavidus taiwanensis LMG 19424] Length = 229 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDDVLADGLTRSLRHSGYAVDHVANGLEADSALSTQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR PV IL+ S++++V+GL GADDY++KPF EL AR+RA+VRR Sbjct: 61 EVLKRLRARGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +L+ G L+ + + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGATLMRHGPLAYDQVGRIAYLNDQMLDLSAREIGLLEILLTRSGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ G I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEV---GGIRIATVRGLGYCL 218 >gi|170738031|ref|YP_001779291.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820219|gb|ACA94801.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 248 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L IEDD+ A+ I L+ F V G DG+ EFD I LD L + G + Sbjct: 27 VLTIEDDEITANEIVTELEGRGFTVEWVANGRDGMARALGNEFDVITLDRMLPVVDGLTI 86 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L +R + TPV +LS + ++++VRGL++G DDY++KPF+ EE+ AR+ ++RRS+ Sbjct: 87 LTTMRSVGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSQAA 146 Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +V G L ++L ++ G I L EY+++E + T+T+ M ++ Sbjct: 147 PATFDTTLVVGPLKLDLISRKAFRDGEEIVLLPTEYRVLEYMMRNAGQTITRTMLFEAVW 206 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +I+V + +LR+K+ + + K I+TV G GY L Sbjct: 207 GYHFDPGTNLIEVHMGRLRRKI-DPSDAKQMIQTVRGAGYRL 247 >gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8] gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8] gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62] gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF] Length = 234 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 131/228 (57%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + V+ GE+ +E + E D IILDL L + G E Sbjct: 3 KILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +A QS + GDL+++ DA V +G +I LT +E++++ L+ +T+E Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ ++ Y+ T G GY LR Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLR 229 >gi|16265177|ref|NP_437969.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|307320334|ref|ZP_07599752.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|15141317|emb|CAC49829.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|306894056|gb|EFN24824.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] Length = 225 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ALA + +L+ + V V G + FD +ILDL L ++ G Sbjct: 1 MRILLVEDNRALAEGLSTLLRGSGYAVDVVSDGASAHAVAAAESFDLVILDLNLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R + V IL+ + E++V+GL GADDY+ KPF+ E AR+R ++RR Sbjct: 61 DVLRAMRARQNRAAVLILTARGTPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S++ G++S++L +++ G I + +E ++ELL +R + K+ + L Sbjct: 121 GLRASVVSYGNVSLDLTSRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D+ I+ ++ +LRK+L+ + T G GY L + A E Sbjct: 181 LDDDLSPNAIEQYVSRLRKRLAPFG---LTVRTARGIGYYLDKTAGPE 225 >gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 222 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 127/223 (56%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ +D +ILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGVEGLHRASEGAYDLVILDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR++A++RR Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRH 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G A + G+L ++ A+ V + I LT KE+ ++E L LR ++K L H+ Sbjct: 121 ASGGASPVHEVGELRLDTAARRVFLTEDEISLTTKEFSVLEQLVLRAGEVVSKAEILEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + I++V+I LR+KL G I+TV G GY L Sbjct: 181 WDFAYDGDPNIVEVYISTLRRKL-----GPTLIKTVRGAGYRL 218 >gi|310639384|ref|YP_003944143.1| two component transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308752960|gb|ADO44104.1| two component transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 220 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L +EDD A+A + L F V GE L E+D I+LDLGL + G Sbjct: 1 MRALCVEDDAAIAADVAAALTQAGFLVDHAADGEAAWFLGDTEEYDLIVLDLGLPQLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R PV IL+ + +++V G+ +GADDY+ KPF ELV+R RA+VRR+ Sbjct: 61 TVLRRWRAGGRVMPVLILTARGTWQERVEGIDAGADDYLPKPFQMAELVSRARALVRRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A I G L V+ V + G ++ +T EY+++ LL+L ++ + L HLY Sbjct: 121 GQAAPRIAAGALEVDTTRMEVRLNGAQVFVTALEYRILSLLALNQSRAVPAVELLEHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D EV ++ I +LR+KL G + T G GY L+ +A Sbjct: 181 DDDTKEVNALEAAIARLRRKL-----GPGILNTRRGFGYYLQTDA 220 >gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 239 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ ++ + L+ F V G + ++L + + D ++LD+ L D+ GF Sbjct: 11 RLLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAEDFRPDLVVLDVMLPDVDGFT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R LR + PV L+ DKV GL G DDY++KPF+ EE+VARIRA++RR+ Sbjct: 71 VTRKLRERGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTGG 130 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +V DL + D+ V G + L+ E++++ L L N L+K L+H+ Sbjct: 131 VDGPDTGRLVFHDLELEEDSHEVRRAGREVELSPTEFKLLRYLMLNPNRVLSKAQILDHV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D E I++ +I LR+KL + G + I T G GYVLR Sbjct: 191 WDYDFNGEAGIVESYISYLRRKL-DTEGLEPLIHTKRGVGYVLR 233 >gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1] gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1] gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar finitimus YBT-020] Length = 239 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I +L + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVTESSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|77459117|ref|YP_348623.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383120|gb|ABA74633.1| response regulator protein [Pseudomonas fluorescens Pf0-1] Length = 233 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ALA I L+ ++V V G+ E + D +ILDL L + G +V Sbjct: 4 ILLVEDDTALAELISSYLERNGYSVSVIGRGDHVRERARLNPPDLVILDLMLPGLDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R LR + P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RRS Sbjct: 64 CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLG 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A I+ G+L ++L +TV + + L+ EY ++ +L+ L+++ L L Sbjct: 124 EPMTANDRILMGNLCIDLSERTVTWREQPVELSSGEYNLLVVLARHAGEVLSRDQILQRL 183 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G D + +DV I KLR+K + AG I+TVWG+GY+ Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLF 226 >gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 255 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 137/236 (58%), Gaps = 16/236 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDI 57 M+IL+++D++A+ S+ +S +FN Y L EDGI+ + + + +ILD+ + + Sbjct: 24 MKILVVDDEQAVRDSLR---RSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGM 80 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ IL+ ++ D+V GL +GADDY++KPF EEL+AR+R++VR Sbjct: 81 DGLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVR 140 Query: 118 RSRGHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RS + Q+L+ GDL+++ +++ V G I LT E+ +++LL + LT Sbjct: 141 RSAVESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLT 200 Query: 171 KEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + L ++ G D P ++V+I LR+K + G I TV G GYVLRE A Sbjct: 201 RAQILEEVW-GCDFPTSGNALEVYIGYLRRK-TELEGEDRLIHTVRGVGYVLRETA 254 >gi|16762974|ref|NP_458591.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144461|ref|NP_807803.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213420191|ref|ZP_03353257.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427225|ref|ZP_03359975.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581684|ref|ZP_03363510.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609432|ref|ZP_03369258.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650815|ref|ZP_03380868.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854794|ref|ZP_03383034.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828852|ref|ZP_06546595.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300973|pir||AD1022 two-component response regulator pmrA [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505281|emb|CAD09277.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29140099|gb|AAO71663.1| two-component response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56540681|gb|AAV92794.1| PmrA [Salmonella enterica subsp. enterica serovar Typhi] Length = 222 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L ++E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EEL ARIR Sbjct: 54 LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKPFALEELHARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR +S + G+L++N+ G + LT KEY ++ L L+ + + +E+ Sbjct: 114 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +Y+ +EP ++V I LR K+ GK+ I TV GY+L Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRRFGYML 216 >gi|298246255|ref|ZP_06970061.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297553736|gb|EFH87601.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 247 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 128/236 (54%), Gaps = 18/236 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ +A + L L+ + V + G GIEL + D +ILDL L + G Sbjct: 2 MKILVIEDEANIAQLLRLYLEQAGYAVVTANDGIAGIELHAREKPDLVILDLMLPMLDGM 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R +R +TP+ +L+ ED++ GL SGADDY+ KPF+ E+++R++AI+RR+ Sbjct: 62 EVCRRIRTWA-NTPILMLTARQGEEDRIAGLDSGADDYLVKPFSPREVISRVKAILRRAG 120 Query: 120 ---------RGH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 GH + + G L +N+ A+ V V + LT KE+ ++ L++ Sbjct: 121 LYSSPGVEGEGHHADEKSASGEELSYGPLLINIPARRVTVGPQALSLTVKEFDLLALMAK 180 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + T+E LN ++ + + +DV I LRKKL + + I+TVWG GY Sbjct: 181 APDRVFTRETLLNQVWGYSYLGDGRTVDVHIGTLRKKLESTKQVQQVIQTVWGVGY 236 >gi|229081791|ref|ZP_04214283.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock4-2] gi|228701379|gb|EEL53873.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock4-2] Length = 230 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETIEKMIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|196039567|ref|ZP_03106872.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196029727|gb|EDX68329.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 225 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLMEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNC 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + H + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQHETTFFQFKDLFVDASSNIVKKAGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 225 >gi|166032765|ref|ZP_02235594.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC 27755] gi|166027122|gb|EDR45879.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC 27755] Length = 229 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + +V GE+ ++L + +++ I+LD+ L + GF+ Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLIRENKYNIILLDVMLPKLDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQQVREFS-DVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTER 122 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + IV GD+ ++ + + V + ++LT KE+ ++ELL++ ++ ++E LN Sbjct: 123 QTEERPKGRQIVKGDMKIDCEGRRVVIGEREVNLTAKEFDLLELLAMNQDKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+K+ Y+ T WG GY R Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIEKNPSDPKYVHTKWGVGYYFR 228 >gi|332970747|gb|EGK09727.1| response regulator VanR [Desmospora sp. 8437] Length = 249 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 128/233 (54%), Gaps = 7/233 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD ++ I L SEN+ V V + G DGI K ++ A+ILDL L D+ G +V Sbjct: 18 ILLIEDDPDISCLIAETLWSENYEVDVAENGLDGISYLKKKDYHAVILDLMLPDLDGIDV 77 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR +R ++ + PV IL+ D + GL +GADDY++KPF+ EL AR++A +RR Sbjct: 78 LRHIRESR-NVPVIILTAREEETDLIAGLSTGADDYMTKPFSIPELKARLQAHMRRYLYL 136 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++++V G+L +N ++ + ++ LT KE++++EL+ +K Sbjct: 137 NAKPDQPEAILVHGELCLNRNSHELSIKSEVHKLTSKEFKILELMMSYPTKIFSKSQLFR 196 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ + + V I +LR+K+ Y++TVWG GY L +E+ Sbjct: 197 SVWGDDSMSDENTVMVHIRRLRRKIEPDPSKPRYLQTVWGIGYRLHGGGGEES 249 >gi|255020263|ref|ZP_05292332.1| Two-component system response regulator OmpR [Acidithiobacillus caldus ATCC 51756] gi|254970405|gb|EET27898.1| Two-component system response regulator OmpR [Acidithiobacillus caldus ATCC 51756] Length = 240 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 11/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNV---YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 RILL++DD L + L+ ++F+V T L + +E +F FD ++LD+ + Sbjct: 5 RILLVDDDPRLRSILLRYLEMQDFSVCGVASTALMDRMLER-EF--FDLLLLDVMMPGED 61 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GFE LR + P+ +L+ ++D+V+GL GADDY++KPF EELVARIRA++RR Sbjct: 62 GFEACARLRRQEPQLPIIMLTARGDLDDRVQGLSLGADDYLAKPFEPEELVARIRAVLRR 121 Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S+ + I G + LD +++ RI LT E+ ++ L+ TL+++ Sbjct: 122 SQEPDMAKPSPGAIHFGPFRLALDTRSLWRGEERIPLTETEFSLLHALASHPWQTLSRDR 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + G + P + +DVFI +LR+ + + Y++TVWGRGYV Sbjct: 182 LIQMIRAGDEVPGARGVDVFISRLRRLIEDDPATPRYLQTVWGRGYVF 229 >gi|229169815|ref|ZP_04297512.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613665|gb|EEK70793.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 225 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++ A I L E + + G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSFAKKIVSGLTQEGYFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R +R+ K +TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 IQQNETNFFQFKDLFVDASSHVVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL G+ YI+T+ GRGY + E Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKGR-YIQTIHGRGYSMVE 225 >gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 239 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G LS++ A+ V G RI LT +E+ ++ + ++ Sbjct: 126 LARDSRIDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 LN ++ + E ++ I +LR K+ I TVWGRGY L + +T Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKLAAPEQRDT 239 >gi|72162340|ref|YP_289997.1| response regulator receiver [Thermobifida fusca YX] gi|71916072|gb|AAZ55974.1| response regulator receiver [Thermobifida fusca YX] Length = 217 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I + L+ E+ V V G+ +E ++D IILD L G Sbjct: 1 MRVLVVEDEQVLADAIAVGLRRESMAVDVAYDGDSALERANVNDYDVIILDRDLPGTHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV ++L A+ + +L+ ++DKV GL GADDY++KPF ELVAR+RA+ RRS Sbjct: 61 EVCKSLATARYPGRILMLTAAGELDDKVAGLSLGADDYMAKPFAFAELVARVRALARRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ ++++ TVE G + LT KE+ ++E+L ++ E L +D Sbjct: 121 PPLPPVLRRQGITLDPANHTVERDGRPVSLTPKEFAVLEVLMRANGAVVSAEKLLEKAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P ++ V + LRKKL G I TV G GY Sbjct: 181 ENADPFTNVVRVTVMTLRKKL----GDPPVIHTVQGAGY 215 >gi|116751092|ref|YP_847779.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700156|gb|ABK19344.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 263 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 128/226 (56%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ + +E L F + V G G EL +DAII+D+ L + G Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR I TPV ILS S+ D+V GL+ G DDY++KPF EL+AR+ +++RRS+ Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +++ + GDL ++L ++ V L +E+ ++E L K +T+ L +++ Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 P +++V IC+LR+KL + ++T GY L E++ Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPR-LLQTFRKAGYALVEDS 256 >gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CNEVA-9066] gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055] gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Western North America USA6153] gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger B] gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Vollum] gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Australia 94] gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus anthracis CI] gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus biovar anthracis str. CI] Length = 239 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I +L + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVTETSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|240172200|ref|ZP_04750859.1| two component response transcriptional regulatory protein prra [Mycobacterium kansasii ATCC 12478] Length = 233 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G + + DAI+LD+ + + G V+ ALR P Sbjct: 22 SLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR A S I G Sbjct: 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGP 141 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 L V++ + V G + LT +E+ ++ +L+ K L++ L ++ + ++D Sbjct: 142 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 201 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 VFI LR+KL A GG + TV G G+VLR Sbjct: 202 VFIGYLRRKL-EANGGPRLLHTVRGVGFVLR 231 >gi|228903599|ref|ZP_04067720.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228968205|ref|ZP_04129204.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791468|gb|EEM39071.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228856028|gb|EEN00567.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 222 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I L E + + +G+ + ++D I+LD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIVLDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R+ K +TP+ I++ S ED V GLQ+GADDYI KPF KEELVAR++AI+RRS + Sbjct: 61 CRQIRLVK-TTPIIIVTDNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDCN 119 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 222 >gi|51094316|gb|AAT95326.1| response regulator [Bifidobacterium breve UCC2003] Length = 243 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL +N D+ V G I L+ EY+ + L + L+K L+H++ Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKFVRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223 + I++ +I LRKK + + GGK IET G GY++RE Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIRE 240 >gi|251779341|ref|ZP_04822261.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083656|gb|EES49546.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 229 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED++++ I++ LK NF V + GEDG++ + + D +LD+ L I GF+ Sbjct: 3 RILLVEDEESIRGFIKINLKRNNFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDGFK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ + DK+ GL+ GADDYI KPFN EL+ RI+AI+RR+ Sbjct: 63 VCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTAD 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ ++ ++L ++ + I +T KEY +++L N +++ LN Sbjct: 123 ESEVKENIDKLIREPFIIDLYSQKLFKNNIEIDVTPKEYLLMKLFLKNPNKAFSRDELLN 182 Query: 177 HL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + YD +P K+IDV I +LR K+ + +IET+WG+GY +E Sbjct: 183 LIWGYDYFGDP--KLIDVNIRRLRAKIEDTPSEPEFIETIWGKGYRWKE 229 >gi|255023092|ref|ZP_05295078.1| regulatory protein VanR [Listeria monocytogenes FSL J1-208] Length = 231 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q+ ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSQDKVIIGPILVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL A GG+N I+T+WG GY Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 227 >gi|239628828|ref|ZP_04671859.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239518974|gb|EEQ58840.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +A I L L E + + GE+ + + ++ + ++LDL L + G++ Sbjct: 6 RILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFPEFKPNLVLLDLMLPGMDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR PV +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 66 VCRELRSGS-QVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 119 SRGHAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + A S G DL VNL +V GH + + KE +++ L+ N T+E Sbjct: 125 APAPAPSSTQQGEYVEYPDLIVNLTNYSVIYNGHSVEMPPKELELLYFLASSPNQVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+H++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 185 QLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHTNWA--ITTVWGIGY 229 >gi|188990240|ref|YP_001902250.1| two-component system response regulator [Xanthomonas campestris pv. campestris str. B100] gi|167732000|emb|CAP50188.1| two-component system response regulator [Xanthomonas campestris pv. campestris] Length = 290 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED+ LA +I ++ + D +DG+ + ++ FD ++LD+GL + Sbjct: 58 MRLLLVEDNADLADAIVRRMRRSG---HAVDWQQDGLAAASVLRYQSFDLVVLDIGLPKL 114 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++R Sbjct: 115 DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 174 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG A ++ G + A TV + G I L +EY+++E+L R + K+ N Sbjct: 175 RNRGQASEVVQLGAFVFDNAAHTVSLDGVAIELPNREYRLLEILIGRLGQVVGKDEIGNG 234 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L+ D+ I++++ +LR+KL +A I TV G GY L E E Sbjct: 235 LFGFDDDAGPNAIELYVGRLRRKLIDA---PLRIVTVRGAGYKLEEADPQAVTE 285 >gi|311103968|ref|YP_003976821.1| transcriptional regulator TctD 1 [Achromobacter xylosoxidans A8] gi|310758657|gb|ADP14106.1| transcriptional regulatory protein TctD 1 [Achromobacter xylosoxidans A8] Length = 228 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 124/234 (52%), Gaps = 10/234 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL+ED++ +A + L F V D D F E+DAI++DL L D Sbjct: 1 MRILLVEDERDMASWLMRALAQSGF---VPDHAADARTAEAFMAGTEYDAIVMDLRLPDK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VLR +R TPV +L+ +++D+VRGL GADD+++KPF EEL AR+ A+VR Sbjct: 58 HGLVVLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG + G LS + +++ + G + LT +E+ + L R + K Sbjct: 118 RSRGRQHPRLQCGSLSYDSESRAFTLDGSLLFLTPREHAALAALLTRSGYPVDKSQLFGK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ E I+V + +LRKKL+ G I TV G GY+L E+ E+ E Sbjct: 178 VFTHDSEANPDAIEVVLHRLRKKLT---GSDVRIVTVRGLGYML-ESVASESAE 227 >gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] Length = 239 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I +L + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVKDTSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|68536518|ref|YP_251223.1| two-component system response regulator TcsR4 [Corynebacterium jeikeium K411] gi|68264117|emb|CAI37605.1| two-component system response regulator TcsR4 [Corynebacterium jeikeium K411] Length = 240 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGPQAVDETRRFSPDVVVLDLGLPELDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 74 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LTG E++++ L+LR LT+ + Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTGTEFELLVALALRPGQVLTRHDLVT 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235 >gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon 107 str. F0167] Length = 231 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 134/233 (57%), Gaps = 15/233 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 + L+++D+K + I+ L+ + + V G + +++ K E+D ++LD+ L ++ G E Sbjct: 3 KALVVDDEKLIVKGIKFSLEQDGYEVDTAYDGNEALKMAKEKEYDIVLLDVMLPEMDGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R P+ +L+ + DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 63 VCQAIREFS-EMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSK 121 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ +I DL ++LD++ V + ++LT KE+ ++ELL+ + ++E L Sbjct: 122 KAKAVEKNERVIEVSDLRLDLDSRRVFEKDKELNLTAKEFDILELLTQNPDKVYSREKLL 181 Query: 176 -----NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N L++ D V+ +DV + +LR+K+ YI T WG GY +E Sbjct: 182 SIVWGNKLHEAGD---VRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYFKE 231 >gi|326795286|ref|YP_004313106.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326546050|gb|ADZ91270.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 219 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 128/224 (57%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL++EDD++L + L + + V D +DG+ + + FD +ILD+GL + Sbjct: 1 MRILVVEDDESLGSGLCTALGQDGYTV---DWLKDGLHASQALQSEHFDLVILDVGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VL+ +R+ K PV +L+ +IED++ GL +GADDY+ KPF +EL AR+RA++R Sbjct: 58 DGFSVLKNMRLLKSEIPVLVLTARDAIEDRITGLDAGADDYLVKPFEVDELKARVRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A + I ++ + +A+ V ++ + LT +EY ++ L T+++ Sbjct: 118 RASGRASAHIEYKNIRIEPNAQQVFMEDKEVTLTRREYSLLVELVSHPGHVFTRDVLQQL 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY D+ E ++V I +RKKL + + TV G GY++ Sbjct: 178 LYGWGDDVESNTLEVHIHHIRKKLFSG-----LVRTVRGVGYIV 216 >gi|254293644|ref|YP_003059667.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254042175|gb|ACT58970.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 223 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 128/227 (56%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD A + +L +V V + GE G+ + EFDA+++D + + G Sbjct: 1 MRVLVIEDDIEAADFVRKVLSEAGHDVAVENDGEAGLSRAQSDEFDAMVVDRMMPKMNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R +TP L+ + +E++V GL++G DDY+ KPF EL+AR+ A+ RR+ Sbjct: 61 EMLTTYRDTGGNTPALFLTALGDVENRVEGLKAGGDDYLCKPFAPSELIARVEALGRRAS 120 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + GDL ++L A+TV +I L +E++++E L + +T+ M L ++ Sbjct: 121 SEAPTTKLQVGDLVMDLLARTVFRGEVKIDLQPREFRLLEFLMRNADQVVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222 D +P+ +IDV I +LR K+ K++ + TV G GY L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKID-----KDFEVALLHTVRGAGYRLQ 222 >gi|29375629|ref|NP_814783.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|227517974|ref|ZP_03948023.1| response regulator [Enterococcus faecalis TX0104] gi|227555159|ref|ZP_03985206.1| response regulator [Enterococcus faecalis HH22] gi|229546898|ref|ZP_04435623.1| response regulator protein [Enterococcus faecalis TX1322] gi|229548990|ref|ZP_04437715.1| response regulator [Enterococcus faecalis ATCC 29200] gi|255971502|ref|ZP_05422088.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255974117|ref|ZP_05424703.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256617972|ref|ZP_05474818.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256761808|ref|ZP_05502388.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256957140|ref|ZP_05561311.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256960233|ref|ZP_05564404.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256962524|ref|ZP_05566695.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257077936|ref|ZP_05572297.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257081302|ref|ZP_05575663.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083959|ref|ZP_05578320.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257086407|ref|ZP_05580768.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257089457|ref|ZP_05583818.1| two component system response regulator [Enterococcus faecalis CH188] gi|257415667|ref|ZP_05592661.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|257421297|ref|ZP_05598287.1| two component system response regulator [Enterococcus faecalis X98] gi|293382595|ref|ZP_06628528.1| DNA-binding response regulator CsrR [Enterococcus faecalis R712] gi|293387823|ref|ZP_06632365.1| DNA-binding response regulator CsrR [Enterococcus faecalis S613] gi|294779303|ref|ZP_06744707.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300859890|ref|ZP_07105978.1| response regulator ArlR [Enterococcus faecalis TUSoD Ef11] gi|307269675|ref|ZP_07551008.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307272069|ref|ZP_07553334.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307275532|ref|ZP_07556674.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307278905|ref|ZP_07559965.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307286908|ref|ZP_07566988.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307289987|ref|ZP_07569912.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312900988|ref|ZP_07760281.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312904612|ref|ZP_07763770.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312906799|ref|ZP_07765796.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312952678|ref|ZP_07771540.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|312978946|ref|ZP_07790672.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|29343090|gb|AAO80853.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|44933598|gb|AAS49393.1| response regulator [Enterococcus faecalis] gi|227074592|gb|EEI12555.1| response regulator [Enterococcus faecalis TX0104] gi|227175707|gb|EEI56679.1| response regulator [Enterococcus faecalis HH22] gi|229306011|gb|EEN72007.1| response regulator [Enterococcus faecalis ATCC 29200] gi|229308063|gb|EEN74050.1| response regulator protein [Enterococcus faecalis TX1322] gi|255962520|gb|EET94996.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255966989|gb|EET97611.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256597499|gb|EEU16675.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256683059|gb|EEU22754.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256947636|gb|EEU64268.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256950729|gb|EEU67361.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256953020|gb|EEU69652.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256985966|gb|EEU73268.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256989332|gb|EEU76634.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991989|gb|EEU79291.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256994437|gb|EEU81739.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|256998269|gb|EEU84789.1| two component system response regulator [Enterococcus faecalis CH188] gi|257157495|gb|EEU87455.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|257163121|gb|EEU93081.1| two component system response regulator [Enterococcus faecalis X98] gi|291080038|gb|EFE17402.1| DNA-binding response regulator CsrR [Enterococcus faecalis R712] gi|291082798|gb|EFE19761.1| DNA-binding response regulator CsrR [Enterococcus faecalis S613] gi|294453670|gb|EFG22068.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|295114600|emb|CBL33237.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] gi|300850708|gb|EFK78457.1| response regulator ArlR [Enterococcus faecalis TUSoD Ef11] gi|306498945|gb|EFM68438.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306502033|gb|EFM71320.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504387|gb|EFM73597.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306507920|gb|EFM77048.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306511289|gb|EFM80294.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306514003|gb|EFM82594.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310627053|gb|EFQ10336.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310629194|gb|EFQ12477.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310632125|gb|EFQ15408.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311288383|gb|EFQ66939.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311291889|gb|EFQ70445.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315027027|gb|EFT38959.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315029740|gb|EFT41672.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315031750|gb|EFT43682.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315034176|gb|EFT46108.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315144686|gb|EFT88702.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147999|gb|EFT92015.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315149571|gb|EFT93587.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315153125|gb|EFT97141.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315156898|gb|EFU00915.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315157685|gb|EFU01702.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315160657|gb|EFU04674.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165086|gb|EFU09103.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315168068|gb|EFU12085.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315171987|gb|EFU16004.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315574289|gb|EFU86480.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315577417|gb|EFU89608.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315581638|gb|EFU93829.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480292|gb|ADX79731.1| response regulator [Enterococcus faecalis 62] gi|327534636|gb|AEA93470.1| response regulator [Enterococcus faecalis OG1RF] Length = 228 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 130/226 (57%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K LA +EL LK E + V G G+E E+DAI+LDL L ++ G EV Sbjct: 4 ILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLMLPELNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116 R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA I Sbjct: 64 CRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+ I DL++ + + V I LT +EY+++ L N L +++ LN Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + G ++YI+TV G GYV+R Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227 >gi|116749438|ref|YP_846125.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116698502|gb|ABK17690.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 223 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 136/222 (61%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K +A I L+ E + V V GE G+++ D IILD+ L + G Sbjct: 1 MRLLVVEDEKKVASFIRKGLEEEGYAVDVALDGEVGLQMAMDRVHDLIILDIQLPRLSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR+LR +ISTPV +L+ ++IEDKV GL +GADDY++KPF+ ELVAR+RA++RR Sbjct: 61 ELLRSLRAKRISTPVLLLTVRATIEDKVLGLDAGADDYLTKPFSFRELVARVRALLRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +Q+ + DL+++ TV +I LT KE+ +++ + LT+ M H++D Sbjct: 121 ESSQTELRVADLTLDPVRHTVSRGSEKIELTAKEFALLDYFMRNPDRVLTRTMIAEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +IDV++ LR+K+ + K I TV G GY+L+ Sbjct: 181 YDFDSMTNVIDVYVNYLRRKIDSDREPK-LIHTVRGVGYMLK 221 >gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria innocua FSL S4-378] Length = 240 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G Sbjct: 6 VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K+ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 66 EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 126 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 186 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 240 >gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13] Length = 242 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 132/234 (56%), Gaps = 12/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V V GE+G+ FD I+LDL L G E Sbjct: 4 KILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEERFDMIVLDLMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR KI TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR + Sbjct: 64 VCKELRQHKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRMQQ 123 Query: 121 --GHAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 G+ ++ IV GD+ + + + R+ LT KE++++ LS K L Sbjct: 124 MTGNTEAPKVEEDTSEKIVIGDVKILPEHYEAYFREERLELTPKEFELLVYLSKNKGRVL 183 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 T++ L+ +++ + +I+DV I LR+K+ YI+T+ G GY L E Sbjct: 184 TRDQLLSAVWNYDFAGDTRIVDVHISHLREKIETDTKKPTYIKTIRGLGYKLEE 237 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300072146|gb|ADJ61545.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+ED+ + L F V G DG+ + ++ IILD+ L + G+ Sbjct: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR TPV L+ +ED+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DILRELRRTH-DTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 LI D+ +++ + V G RI LT KE+ ++ +L R L++ + ++D Sbjct: 120 SREVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV + +LR KL K + TVWG GYV Sbjct: 180 MNFDSDTNVVDVAVRRLRAKLDEGF-EKKLLHTVWGMGYVF 219 >gi|300787588|ref|YP_003767879.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797102|gb|ADJ47477.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 228 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD ++ ++ L L E+F+V GEDG++L + D ++LDL L I G Sbjct: 6 RVLLVEDDAMISEALSLALTDEDFDVLAAATGEDGLDLLESTSVDVVLLDLMLPGIDGLT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ + D + GL++GADDY++KP EL ARIRA++RR+ Sbjct: 66 VCRRVR-EHGDLPIIVITARTDTHDVIAGLEAGADDYVTKPLVAGELAARIRALLRRTAS 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L + D + V G +HLT E++++ L+ + +T+E L ++ Sbjct: 125 ARPARFSVGRLEIRPDEEAVHRDGVPVHLTRTEFRLLTELAAAEGKVVTREQLLQRVWGH 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++DV I +LR+K+ + + TV G GY Sbjct: 185 DYFGDTRLLDVHIRRLRRKVEPDPDAPSLVLTVRGSGY 222 >gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L ++ L+ E F V G DG+ L + E+ AI+LD+ L + G+ Sbjct: 1 MRILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALARGTEYAAIVLDVMLPGLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR A + TP+ +L+ D+ GL GADDY++KPF+ L+AR+RA+VRR Sbjct: 61 QVCSRLREAGVWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL + A I LT KE+ ++E L+ R ++K ++ ++D Sbjct: 121 LDRPEVLELGDLRLEPTALACSRGNEGITLTAKEFAVLECLARRAGQVVSKTEIVHTVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +++V+I LR+K+ + G+ I T+ G GY+L Sbjct: 181 TAYEGGANLVEVYIRTLRRKI-DVPYGRQAIRTIRGAGYLL 220 >gi|30023144|ref|NP_834775.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|296505525|ref|YP_003667225.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29898704|gb|AAP11976.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|296326577|gb|ADH09505.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++ A I L E + + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSSAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K +TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQKEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYNIVVNPNVVDLYIGYVRKKLK-CEKKERYIQTIHGRGYSMIE 225 >gi|291302356|ref|YP_003513634.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571576|gb|ADD44541.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED + + + L + F V G +G+ E D I+LD+GL D+ GF+ Sbjct: 3 RILIIEDSERITAFLTKGLAAAGFTPSVAHTGAEGLGRALTGEVDLIVLDIGLPDMDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LRALR A TPV IL+ S D+V GL GADDY+ KPF+ +EL+ARIR +R G Sbjct: 63 LLRALRAAGRDTPVIILTARDSATDRVTGLSDGADDYMPKPFSVDELLARIRLRLRPVSG 122 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+++ GDL ++L + V G ++ LT +E +++ L L++E L+ ++ Sbjct: 123 GGSDQAVLRVGDLELDLRTRAVRAGGRQVELTARELSLLDTLMRNAGQVLSREQLLSRVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++DV++ LR+K+ G + IETV G GY L + Sbjct: 183 GFDFDPGSNVVDVYVRYLRRKI-----GADRIETVRGLGYRLTQ 221 >gi|228910935|ref|ZP_04074744.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228848886|gb|EEM93731.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 222 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I L E + + +G+ + ++D I+LD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIVLDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R+ K +TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS + Sbjct: 61 CRQIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCN 119 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMTE 222 >gi|187928825|ref|YP_001899312.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|187725715|gb|ACD26880.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 228 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V + G DG L +D IILD+ L D+ G+ Sbjct: 1 MKLLVVEDESKTGQYLRQGLTEAGFVVDLVGNGLDGQHLALNESYDLIILDVMLPDLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +LR A+ + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R ++R R Sbjct: 61 RILLSLRAAESAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLR--R 118 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G Q I GDL ++L + G RI LT KE+ ++ELL+ R+ L + + + Sbjct: 119 GTVQMGLDRIQVGDLVLDLSRRRASRGGRRIALTSKEFALLELLARRRGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +IDV I +LR K+ + K I+TV G GYVL Sbjct: 179 VWDMNFDSDSNVIDVAIRRLRAKIDDDFDAK-LIQTVRGMGYVL 221 >gi|114561278|ref|YP_748791.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114332571|gb|ABI69953.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 227 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + ++ + V G++G+ L K ++D +ILD L + G Sbjct: 3 MRILLVEDDATTLKYVADGFTAQKYQVDSATDGQEGLTLAKHNQYDLLILDRMLPKLDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ALR + TPV ILS +S ++++V+GL++G DDY++KPF EL+ R + +R+ Sbjct: 63 TLLSALRTSGNKTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFAELLVRAEKLAQRNV 122 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + I G L + L + V + + L KE+Q+++ L N +++ + ++ Sbjct: 123 VEPAATEIEVGSLKMELLTRKVTLDDSELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P +IDV I KLR+K G+ IETV G GY L Sbjct: 183 DYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRL 223 >gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria innocua FSL J1-023] Length = 240 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G Sbjct: 6 VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K+ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 66 EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 126 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 186 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 240 >gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 243 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL +N D+ V G + L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223 + I++ +I LRKK + + GGK IET G GY++RE Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIRE 240 >gi|167622279|ref|YP_001672573.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352301|gb|ABZ74914.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 227 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 129/223 (57%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLI+DD L+ + +L+ E F + + G+ G++L +FD I+LD+ L + GFE Sbjct: 3 RILLIDDDLGLSELLAQLLELEGFELTLAHDGQSGLDLAIEQQFDLILLDVMLPKLNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLRALR +K TPV +L+ D+V GL+ GADDY+ KPFN ELVARIRAI+RR+ Sbjct: 63 VLRALR-SKKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAIIRRTHS 121 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A ++ GD++++ + V Q I LTG E+ ++ L +KE+ Sbjct: 122 QANETPLSTRQYGDINLDPARQEVHCQDQLIILTGTEFSLLFELVKSAGELASKEVLSEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + P + +D+ + LRKK+ G+ ++T+ G+GY+ Sbjct: 182 VLGKKLMPFDRSLDMHLSNLRKKMPERDDGRPRVKTIRGKGYI 224 >gi|160933152|ref|ZP_02080541.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753] gi|156868226|gb|EDO61598.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753] Length = 232 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD A+++ I L+++ + + G + Y D +ILDLGL D+ G + Sbjct: 5 KVLVVEDDAAISNLIRTTLETQEYQYHTAQNGSGALMEVVSYHPDVVILDLGLPDMDGVD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +++ +R + P+ ++S + +DKV L +GADDY++KPF+ +E +AR+R +RRS Sbjct: 65 IIKKIRSFS-TMPIIVVSARTEDQDKVDALDAGADDYLTKPFSIDEFLARLRVALRRSHT 123 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G S+ V G+L ++ A V V +HLT EY+++ LL+ LT L Sbjct: 124 EGAKPGEESSVYVNGNLKIDYAAGCVYVDSAEVHLTPIEYKLLCLLAQNTGKVLTHNYIL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + VF+ LRKK+ + YI+T G GY Sbjct: 184 KEVWGSTLASDIPSLRVFMATLRKKIEKSTSSPQYIQTHIGVGY 227 >gi|312888838|ref|ZP_07748401.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311298713|gb|EFQ75819.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 225 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 128/225 (56%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L++ED+K+LA +E+ L + N+ + G+ E +D I++DLGL D G Sbjct: 1 MNVLIVEDEKSLARELEIFLVNCNYVCEICYDGKSASEKIAINLYDFILIDLGLPDYDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ + IL+ + + D+++GL GADDY+ KPF+ EL +R++AI RR Sbjct: 61 DLLKEAKTYNAEAACLILTARAEVYDRIKGLDLGADDYLPKPFSMLELQSRMQAITRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + G+ ++++ +++ G+ + +T KEY +I L L KN TLT+ H++ Sbjct: 121 GLKHTTLTLGEFLIDMNDRSISHNGNMVTSITKKEYDLIAYLILHKNRTLTRPQLSEHIW 180 Query: 180 DG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D+ + IDV I +RKKLS A +++ETV G GY ++ Sbjct: 181 GSVVNDDYDSNYIDVHIKNIRKKLS-AYAQPDWLETVRGLGYKIK 224 >gi|117676235|ref|YP_863811.1| DNA-binding transcriptional activator CusR [Shewanella sp. ANA-3] gi|117615059|gb|ABK50512.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 226 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L+ F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDMNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR++ ++RR Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S LS++L ++ V G+RI LT KE+ ++E + L + + + ++ Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ N K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYETK-LIQTVRGVGYML 221 >gi|299139571|ref|ZP_07032745.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298598499|gb|EFI54663.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 131/224 (58%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ + ++ L + V+ + G EL + + +I+DLGL D G Sbjct: 1 MRLLLVEDEPEIQSFVKQSLMEAGYEVHTAEDGSAATELASKHVYHGLIVDLGLPDQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR + +++PV ILS S++D+V+GL+ G DDY++KPF EL+AR+R ++RR+ Sbjct: 61 DLILQLRRSGVTSPVLILSARRSVDDRVKGLELGGDDYLTKPFAIAELLARMRNLLRRNS 120 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A+ + DL +++ + ++L+ +E+ ++E L +T+ M L + Sbjct: 121 SQAEDAMRLRVCDLELDMLKRRATRGDEVLNLSPQEFVLLEYLCRHAGRVVTRSMLLKEV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + R +P+ ++DV I +LR K+ + AG + I+T+ G GYVL+ Sbjct: 181 WGMRIQPDTNVVDVHIYRLRGKI-DTAGREPLIKTLRGIGYVLK 223 >gi|256545445|ref|ZP_05472807.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170] gi|256398841|gb|EEU12456.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170] Length = 224 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K L ++I LK + V G D +E+ + +D I+LDL L ++ G Sbjct: 1 MKILIVEDEKILNNTINKSLKDAGYEVESAFDGFDAMEMIEIESYDLIVLDLNLPNMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR + T V ILS S I+DKV GL +GA+D++ KPF+ +EL AR+R++ RR+ Sbjct: 61 EILKNLRKEDVETKVLILSARSQIQDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + + +T+ ++ + LT KE ++E L L + +++E ++H++D Sbjct: 121 IQNNTELSFDKIKFDSKNRTIFIEDKELKLTRKESGILEYLLLNQGRPVSQEELIDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I V I LRKKL G + IE G GY+LR+ Sbjct: 181 SSVDLLSNSIRVHISALRKKLKQEL-GYDPIENRIGIGYLLRK 222 >gi|322418159|ref|YP_004197382.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M18] gi|320124546|gb|ADW12106.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M L+IED + A + L + N + G G+ + K +++ IILDL L I GF Sbjct: 1 MNFLIIEDSEKTAEQLRKGLAEVSINADIAGDGLRGLAMAKEKDYELIILDLMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR A STPV +L+ + D++ GLQSGADDY+ KPF+ EL ARI+A++RR + Sbjct: 61 EVVKRLRSAGKSTPVIMLTARDDVHDRICGLQSGADDYMVKPFSFGELCARIQALLRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I DL+VN A+ G + LT KE+ ++ +L R ++ +++ Sbjct: 121 VLQQDEIQVADLTVNFFARKATRGGKHLELTPKEFALLSMLIRRAGEVQSRLRIAETVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +KI+DV + LR K+ + K I TV G GYVL + Sbjct: 181 LGFDANLKIVDVKLAGLRAKV-DGPFEKKLIHTVRGVGYVLED 222 >gi|253688253|ref|YP_003017443.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754831|gb|ACT12907.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 229 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 120/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL++ED+ L H + + + V D D E F D I+DLGL D Sbjct: 1 MRILVVEDNVLLRHHLTVQMNEMGHQV---DAASDAKEADYFLHENMPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++ P+ +L+ +DKV L++GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGMSMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + + G I LT EY +IE L K ++KE + Sbjct: 118 RNSGLASQVISLPPFEIDLSRRELVIHGSPIKLTAFEYTIIETLIRNKGKVVSKESLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQAE-APDVITTVRGQGY 218 >gi|229124627|ref|ZP_04253812.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228658967|gb|EEL14622.1| DNA-binding response regulator [Bacillus cereus 95/8201] Length = 222 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I L E + +G+ + ++D IILD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 61 CRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCN 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + H + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQHDTTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GHNVVVNPNVVDLYIGYIRKKLKCEKKNR-YIQTIHGRGYSMVE 222 >gi|126437092|ref|YP_001072783.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126236892|gb|ABO00293.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 251 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 11/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ ALA + L ++F + D G D + + + ++ D +ILDLGL + G E Sbjct: 19 RALVVDDEAALAEVVASYLNRDHFTTRIVDNGPDAVAVARDFDPDVVILDLGLPGMDGLE 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR + V +L+ + D + GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 79 VCRRLRTFSDAY-VVMLTARDTEMDTIVGLTVGADDYVTKPFSPRELVARIRAMLRRPRA 137 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 G + + G L +++ A+ V + G I LT E+ ++ LS R L++ Sbjct: 138 TPERESDGGGDVAAPLSFGPLRIDVAAREVSLDGEPILLTRTEFDLLAALSARPGVVLSR 197 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L + +G ++DV I +R+KL + Y+ TV G GY Sbjct: 198 RQLLETVREGPWVGNEHLVDVHIGHVRRKLGDDPAAPRYVITVRGVGY 245 >gi|313905194|ref|ZP_07838562.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469947|gb|EFR65281.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 221 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 120/201 (59%), Gaps = 1/201 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED K + ++ +L+ E + V G + +E +D +ILD+ + + G Sbjct: 1 MKILLAEDTKDMNRALTAVLEHEGYEVASAFDGAEALEYIDRDSYDVMILDIMMPKVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R R KI TPV +L+ + I+DKV GL +GADDY++KPF+ +EL+ARIRA+VRRS Sbjct: 61 EVIREARNRKIVTPVLLLTAKAEIDDKVAGLDAGADDYLTKPFSIKELLARIRAMVRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + D+ + D + + G+ + L+ KE++++ L L + + E L+H++ Sbjct: 121 DYTEQDLQFRDIRLKADGMEL-IAGNSVRLSQKEFELMRQLILNADHPVDTEFLLSHIWP 179 Query: 181 GRDEPEVKIIDVFICKLRKKL 201 E E + ++IC L++KL Sbjct: 180 REPEAESDTVWLYICYLKRKL 200 >gi|312867634|ref|ZP_07727840.1| putative response regulator ArlR [Streptococcus parasanguinis F0405] gi|311096697|gb|EFQ54935.1| putative response regulator ArlR [Streptococcus parasanguinis F0405] Length = 226 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 132/230 (57%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGIYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 HVLKELREKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G+L VNL + V + L GKE+ ++ +N L K + L+ Sbjct: 121 KVNENTLNYGNLKVNLSTNSTYVDDKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE---TVWGRGYVLRENAKD 227 + + +++V++ K+RKKL G +++E T+ GY+L++ KD Sbjct: 181 FDSDTTISVVEVYVSKIRKKLK----GTDFVESLQTLRSVGYILKDANKD 226 >gi|52140441|ref|YP_086387.1| response regulator [Bacillus cereus E33L] gi|51973910|gb|AAU15460.1| response regulator [Bacillus cereus E33L] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLMEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K+ TPV I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVKM-TPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+ I DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NLQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 225 >gi|260063704|ref|YP_003196784.1| two-component system response regulator [Robiginitalea biformata HTCC2501] gi|88783149|gb|EAR14322.1| two-component system response regulator [Robiginitalea biformata HTCC2501] Length = 229 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ A+A + L+ + V V GE G+E+ + +FD +ILD+ L + G E Sbjct: 4 RILLIEDEYAIASFVTQGLQESGYAVAVCYDGEKGLEMLQDGDFDLVILDIVLPGMDGRE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V R +R + P+ +L+ + S E+ VRGL SGADDY+ KPF +EL AR+RA+ RR S Sbjct: 64 VARTIRGQGLDLPILMLTALGSTENVVRGLDSGADDYLVKPFKFKELEARVRALSRRRSS 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G+L ++ DAKTV IHLT EY+++E L L KN L++ L ++ Sbjct: 124 GPRGNRTLSAGNLVLDRDAKTVRRGEADIHLTATEYRLLEYLLLNKNRVLSRIDILESVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D ++DV++ LR K+ K I TV G GY L++N Sbjct: 184 DITFNLGTNVVDVYVNYLRNKIDKPFDSK-LIHTVIGMGYTLKDN 227 >gi|210620624|ref|ZP_03292148.1| hypothetical protein CLOHIR_00091 [Clostridium hiranonis DSM 13275] gi|210155233|gb|EEA86239.1| hypothetical protein CLOHIR_00091 [Clostridium hiranonis DSM 13275] Length = 231 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 119/203 (58%), Gaps = 4/203 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL ED+K L+ +++ +L+S ++V GED I + E+DA+ILD+ + + G Sbjct: 4 MKLLLAEDEKELSKALKAILESNRYSVDAVYDGEDAIYYMENSEYDAVILDIMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ +R I P+ +L+ S ++DKV GL SGA+DY++KPF+ +EL+AR+R + R Sbjct: 64 TALKTVREKGIDVPIIMLTAKSEVDDKVLGLDSGANDYLTKPFSAKELLARLRVLTREKS 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+I G++S LD T E+ + LT KEYQM+E+ ++ E + + Sbjct: 124 VSNTSIITVGNVS--LDTTTFEMYSPNGKFRLTNKEYQMMEIFMRNPKHIVSTEQLIEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKL 201 + + E ++ V+I LRKKL Sbjct: 182 WGYDSDMENNVVWVYISYLRKKL 204 >gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI] gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 357 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 130/226 (57%), Gaps = 10/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + + L++E F V G + + L ++D +ILDL + + G+ Sbjct: 128 KILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLLTGGKWDLLILDLMMPGVDGWS 187 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + P+ +L+ + D++ GL+ GADDY+ KPF+ ELVAR++A++RRS+ Sbjct: 188 VCREVR-KTTALPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLRRSQI 246 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G L G LS+N +++ V V ++LT KEY M+ L++ + T T+E Sbjct: 247 APPAAQDGKPVVLNYPG-LSINPESRLVLVNEQPVNLTPKEYDMLYLMARSPSRTFTREE 305 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + + +D + +LR KL A+G ++YI TVWG GY Sbjct: 306 LIESVWGYDYFGDTRTVDTHVNRLRDKLQKASGYRSYISTVWGVGY 351 >gi|307730121|ref|YP_003907345.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584656|gb|ADN58054.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ + ++ L+ F+V + G +G+ L + ++D I+LD+ L + G+ Sbjct: 1 MHILIVEDEPKTSAYLKKGLEESGFSVDLASDGAEGLLLAQEQDYDVIVLDVMLPTMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR A +TPV L+ + D+VRGL+ G DDY+ KPF E +AR+R + RR Sbjct: 61 AVLKVLR-ATHATPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVEFLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL R+ L++ ++++D Sbjct: 120 PRESERLAVGDLEMDIQRRRVKRGATRIDLTPREFSLLQLLVRRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +++V I +LR K+ +A K I+TV G GYV+ AKD Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIQTVRGVGYVI--EAKD 223 >gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 239 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I +L + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVKEASDEESITLAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239 >gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC 29799] gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC 29799] Length = 238 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+K L I+ L+SE + V GE+ +EL + FD IILDL + I G Sbjct: 12 MKILVVDDEKVLVKGIKFNLESEGYQVETGCDGEEAVELARSGGFDLIILDLMMPKIDGL 71 Query: 61 EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + +R+ + S P+ +L+ S DK+ G + GADDYI+KPFN EL AR+RA++RR+ Sbjct: 72 QA--CMRIREFSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRRA 129 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQ + + G + ++ D ++ + LT KE+ +IELL ++E L Sbjct: 130 GMAAQKEKKARLTAGHIVIDADERSAWKGETPVDLTAKEFDLIELLMRNPGRVYSRENLL 189 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 N ++ + + +DV + +LR+KL YI T WG GY + + Sbjct: 190 NVVWGYEYAGDYRTVDVHVRRLREKLELDPARPEYILTKWGVGYYFKNS 238 >gi|255318782|ref|ZP_05360008.1| DNA-binding response regulator [Acinetobacter radioresistens SK82] gi|262378954|ref|ZP_06072111.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255304038|gb|EET83229.1| DNA-binding response regulator [Acinetobacter radioresistens SK82] gi|262300239|gb|EEY88151.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A S +L+ + F V + G DG++L K EFD ++LDLGL + G + Sbjct: 3 KILIIEDDFMIAESTITLLQYQQFAVQWVNNGIDGLKLLKTQEFDIVLLDLGLPLMDGMQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL+ +R K + PV I+S + ++V GL GADDY+ KP+ +EL+ARI+A++RRS Sbjct: 63 VLKQIRQQKPALPVLIISARDQLHNRVDGLNQGADDYLVKPYEFDELLARIQALLRRSTI 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++L+ + + I L+ +E+ ++ L ++ + Sbjct: 123 TSIQTETVQILQHGDLILDLEQHSALFKNEHIDLSKREWAILIPLMSYPYKIFSRSSLED 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LYD E I+V+I LR KL GK++I T+ G GY L Sbjct: 183 KLYDIDSEINSNTIEVYIHHLRTKL-----GKDFIRTIRGLGYRL 222 >gi|167761405|ref|ZP_02433532.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704] gi|167661071|gb|EDS05201.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K L +I L+ + + V GE ++ +D IILDL L + G Sbjct: 1 MRILVVEDEKTLCKTIAKGLRLDGYEVDTCFDGETAWDIILSESYDLIILDLNLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R+ T + ILS ++DK+ GL GA+DY+ KPF+ EEL AR+R++ RR Sbjct: 61 KVLQKIRMEDTETNILILSARGQLQDKIDGLDGGANDYLCKPFHFEELEARVRSLTRRCV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G++S++ A+T +G + LT KE ++E L L + +++E + H++D Sbjct: 121 VQNNLVLECGEISLDTKARTALARGIELSLTRKELGLLEYLMLHQERPVSQEELIQHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G + I V I LRKKL AA G + I G+GY++ Sbjct: 181 GSVDSFSNSIRVHISALRKKL-RAALGYDPITNRIGQGYLI 220 >gi|72162948|ref|YP_290605.1| response regulator receiver [Thermobifida fusca YX] gi|71916680|gb|AAZ56582.1| response regulator receiver [Thermobifida fusca YX] Length = 222 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 3/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD +++ + L+ E ++V VT G + ++ + + D ++LDLGL ++ G EV Sbjct: 4 VLLAEDDASISEPLARALRREGYSVDVTVDGMETLDRARSGDIDLLVLDLGLPELDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR TP+ IL+ + D V GL +GADDY++KPF EL+AR+RA++R RG Sbjct: 64 ARRLRSEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR--RGG 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + +V G + ++ D++ + + LT KE+ ++ +L +T+E + ++D Sbjct: 122 GEVPVVHG-VRIDTDSRRAWLGDRELQLTTKEFDLLRVLVREAGKVVTREQIMREVWDTN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LR+KL + A +YI TV G G+ Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDANQPSYITTVRGVGF 217 >gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] Length = 228 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRIL+++DD+A+ S+ +S +FN Y +L DG+E DA++LD+ + + Sbjct: 1 MRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 58 DGLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 117 Query: 118 RSRGH--AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R++ A+S+ + DL+++ + V RI LT E+ ++E+L LT+ Sbjct: 118 RTKPEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 177 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 178 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 228 >gi|257465593|ref|ZP_05629964.1| two component transcriptional regulator [Actinobacillus minor 202] gi|257451253|gb|EEV25296.1| two component transcriptional regulator [Actinobacillus minor 202] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A ++ LK ++ V + G+ E +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLPGQDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R K STPV I++ ++ ++ GL GADDYI KPF+ EL AR+RA++RR Sbjct: 61 QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + + G ++++ + VE+ G I L+ KE+ ++ L R L++ + + Sbjct: 121 GQSSPKLTNGVITLDPTSYVVEIAGQNSTITLSNKEFSVLHALISRAGMILSRADLEDKI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y +E E ID I LRKK+ GK I+ V G G+++ Sbjct: 181 YAWGEEVESNAIDFLIHGLRKKI-----GKEQIKNVRGVGWMM 218 >gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603] gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +IL+++DDK + + I + L++E T ED IE + E FD IILD+ + ++ Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 61 GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 Query: 119 SRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +S++ GDL+VN D + V ++G + LT KE+ ++ELL+ K L+ Sbjct: 120 FKKYNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVA 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 180 KIYEAVWKDAFYKSDNTVMVHITKIRDKIEADSKHPIYIKTVWGIGY 226 >gi|325568329|ref|ZP_08144696.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325158098|gb|EGC70251.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 228 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 138/233 (59%), Gaps = 8/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL +ED+ ++A ++ +LK ++++V + GE G++ +D ++LD+ L I G Sbjct: 1 MRILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDILVLDIMLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR I TP+ +L+ S ++DKV GL +GADDY++KPF +EL+ARIR++ RR Sbjct: 61 TLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLGRRKD 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + G++ ++ + + +++ L+ KE +++EL R L+KE +N ++ Sbjct: 121 LDYQEDQLAFGNVGLDRNELQLATPSNQVVLSPKEMKLMELFLARPKVILSKETIINKIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVLRENAKDETC 230 + E +++++ LRKKL+ A G I T+ GY+L+ +K+ C Sbjct: 181 GFDPDVEENRVEIYVSLLRKKLTLLEADIG---IRTIRNAGYILQ--SKEPPC 228 >gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 224 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ALA I ++L+++ F G +++ + D ++LDL L + G E Sbjct: 4 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVFRSSRPDLVLLDLMLPGMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D VRGL+SGADDY+ KPF ELVAR+RA +R Sbjct: 64 VCRQVR-AESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + D+++++ TV RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 KAPETLRIADITIDVAGHTVSRGNERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGY 220 >gi|238921931|ref|YP_002935445.1| two-component system, OmpR family, KDP operon response regulator KdpE [Eubacterium eligens ATCC 27750] gi|238873603|gb|ACR73311.1| two-component system, OmpR family, KDP operon response regulator KdpE [Eubacterium eligens ATCC 27750] Length = 232 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + + I LK+ N+ GE I + D I+LDLGL DI G E Sbjct: 5 QILVVEDDSPIRNLITTTLKTNNYRYLTAVNGESAISQTASHNPDIILLDLGLPDIDGVE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V++ +R +TP+ ++S + DK+ L +GADDY++KPF+ +EL+AR+R VRR Sbjct: 65 VIKKIRTWT-NTPIIVISARTEDADKIEALDAGADDYLTKPFSVDELLARLRVTVRRLSL 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ GDL ++ A + G +HLT EY+++ LLS LT Sbjct: 124 MQTDMTQNTSVFENGDLKIDYAAGCAYLNGEELHLTPIEYKLLILLSRNVGRVLTYTYIT 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ E ++ + VF+ LRKK+ YI+T G GY Sbjct: 184 KNIWGSSWENDLASLRVFMATLRKKIEKDVNSPQYIQTHIGIGY 227 >gi|229590186|ref|YP_002872305.1| response regulator protein [Pseudomonas fluorescens SBW25] gi|229362052|emb|CAY48953.1| response regulator protein [Pseudomonas fluorescens SBW25] Length = 249 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 121/227 (53%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD AL+ I L+ + V V G+ E + D +ILDL L + G +V Sbjct: 20 ILLVEDDAALSELIASYLERNGYQVSVLSRGDHVRERARLNPPDLVILDLMLPGLDGLQV 79 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R LR P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RRS Sbjct: 80 CRLLRADSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLS 139 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A I+ G+L ++L +TV + + L+ EY ++ +L+ L+++ L L Sbjct: 140 EPQAANDQIIMGNLCIDLSERTVTWREQSVELSSGEYNLLVVLARHAGEVLSRDQILQRL 199 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G D + +DV I KLR+K + AG I+TVWG+GY+ Sbjct: 200 RGIEFNGTD----RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 242 >gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium 6_1_63FAA] Length = 234 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 129/225 (57%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F+ ++ + GE + + + I+LDL L + G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFDTHIVNDGEAALNAFSSFAPNLILLDLMLPGMDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K + P+ +LS I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIR-QKSNVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRYQP 124 Query: 122 H-AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A + +G DL++NL +V G ++ + KE +++ L+ N T+E Sbjct: 125 NVAPATQPSGKYVEYPDLAINLTNYSVIYYGKQLDMPPKELELLYFLASSPNQVFTREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+H++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 LDHIWGYEYIGDTRTVDVHIKRLREKIKDHPSWA--LSTVWGIGY 227 >gi|125623601|ref|YP_001032084.1| two-component system regulator llrF [Lactococcus lactis subsp. cremoris MG1363] gi|4104695|gb|AAD02113.1| putative response regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124492409|emb|CAL97351.1| two-component system regulator llrF [Lactococcus lactis subsp. cremoris MG1363] Length = 222 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L+ S+ LKS V D G +G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSKSVYDFLKSFAQVKQVYD-GVEGLYEAELGIYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVL+ LR + TPV I++ S++DK+ G GADDY++KPF +EL ARI+A+++R+ Sbjct: 61 EVLKELREQNVDTPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRTG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + G++ +NL K+ V + L GKE+ ++ L +N L KE + ++ Sbjct: 121 KLEDSNGLSYGNIRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + V +++V++ K+RKKL + N + T+ GY+LR Sbjct: 181 GYDSDTTVTVVEVYMSKIRKKLKDTEFVNN-LSTLRNVGYILR 222 >gi|325661991|ref|ZP_08150610.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471654|gb|EGC74873.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium 4_1_37FAA] Length = 224 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/205 (36%), Positives = 117/205 (57%), Gaps = 4/205 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+KALA +++ +L+ N++V GE +E +D IILD+ + G Sbjct: 1 MRLLLAEDEKALAKALKAILERSNYSVDAVYDGEAALEYMAAGNYDGIILDIMMPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R PV +L+ ++DKV GL +GA+DY++KPF+ +EL+AR+RA+ R Sbjct: 61 TVLKEIRKKGSKIPVLLLTAKGEVDDKVEGLDAGANDYLTKPFHAKELLARLRAMTRVQM 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + G+ V LD T E+ + I L KEYQM+E L ++ E F + Sbjct: 121 ESEDSQLKAGN--VTLDRATFELTTPKGSIRLANKEYQMMEFLMSNPGHLISSERFFEKI 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSN 203 + E E+ ++ V++ LRKKLS+ Sbjct: 179 WGYDSEAELNVVWVYLSNLRKKLSS 203 >gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603] gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603] Length = 233 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD IILD+ + ++ G E Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIGALQLLEEKEFDLIILDIMMPNMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R + + P+ +LS S DK++GL SGADDY++KPFN EL+AR+++ +RR Sbjct: 69 ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 127 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S H +S++ GDL+VN D + V ++G LT KE+ ++ELL+ K L+ Sbjct: 128 YNTSINHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFDILELLASNKGIVLSVAKIY 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 231 >gi|229094210|ref|ZP_04225289.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228689202|gb|EEL43024.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 222 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I L E + +G+ + ++D IILD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 61 CRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNCN 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + H + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GYNVVVNPNVVDLYIGYIRKKLKCEKKNR-YIQTIHGRGYSMVE 222 >gi|225569324|ref|ZP_03778349.1| hypothetical protein CLOHYLEM_05406 [Clostridium hylemonae DSM 15053] gi|225162123|gb|EEG74742.1| hypothetical protein CLOHYLEM_05406 [Clostridium hylemonae DSM 15053] Length = 237 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+IED+ LA ++ L + V GE G ++D I+LDL L D GF Sbjct: 16 VRLLIIEDNTELADLMKGKLSGFGYVCDVAYDGESGDLKASDNDYDVILLDLNLPDRDGF 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R IS PV I++ +E +V+GLQ G+DDYI+KPF EL ARI+A++RR R Sbjct: 76 ELLENWRSQGISAPVFIVTARGELEQRVKGLQLGSDDYITKPFEFTELDARIQAVIRRFR 135 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I+ +LS++ + V + G + L+ KE+ ++E L+ ++ E H+YD Sbjct: 136 GRANPVILIEELSLDPATRRVTLDGREVPLSAKEFDILEYLASCYPRIVSNEELAEHVYD 195 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +I V + ++KKL G + + G+GY L Sbjct: 196 ENFDPFSGVIRVHMANIKKKLK--MGDTSILRNEKGKGYYL 234 >gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 230 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 131/233 (56%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 +RIL+++DD+A+ S+ +S +FN Y +L +DG+E L DA++LD+ + + Sbjct: 3 VRILVVDDDRAVRESLR---RSLSFNGYSVELAQDGVEALDLIANNRPDAVVLDVMMPRL 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 60 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119 Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R+ G + DL+++ + V +I LT E+ ++E+L LT+ Sbjct: 120 RTSPDEGPDSPALTFLDLTLDPVTREVTRGSRQISLTRTEFALLEMLIANPRRVLTRSRI 179 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V+I LR+K + A+G I TV G GYVLRE Sbjct: 180 LEEVW-GFDFPTSGNALEVYIGYLRRK-TEASGEPRLIHTVRGVGYVLRETPP 230 >gi|296102481|ref|YP_003612627.1| Transcriptional regulatory protein qseB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056940|gb|ADF61678.1| Transcriptional regulatory protein qseB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD L + + + L + +V ED + + I+LDLGL D G Sbjct: 1 MKILLIEDDLDLGNGVRIALADQGLDVIWVRRKEDALHQLAVCAPELILLDLGLPDGDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R PV IL+ +++D++ GL +GADDY+ KPF EL+AR+RA+ RRS Sbjct: 61 SLMAYVRQQLKGIPVIILTARETLQDRLSGLDAGADDYLVKPFVLAELLARVRALARRSY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ + LS+++ + V V I LT EY ++E L LR + LT+ FL Sbjct: 121 GYQNEAVEIRGLSLHVPTRRVTVSSRHIELTASEYALLETLMLRADRVLTRR-FLEERIF 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E +DV + LR+K+ G Y+ TV G GYV+ Sbjct: 180 GAKENMSNALDVHMGNLRRKI-----GDGYVRTVRGVGYVI 215 >gi|220913188|ref|YP_002488497.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 224 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ALA I ++L+++ F G +++ + D ++LDL L + G E Sbjct: 4 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDIFRSSRPDLVLLDLMLPGVDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ + D VRGL+SGADDY+ KPF ELVAR+RA +R Sbjct: 64 VCRQVR-AESDVPIVMLTAKADTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + D+++++ TV RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 KAPETLRIADITIDVAGHTVSRGSERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGY 220 >gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST26] gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST26] Length = 230 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ ++ L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 228 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 119/221 (53%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ LA +EL L SE + V V G G+ L + D +LD L + G E+ Sbjct: 5 ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLSGLEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR S PV +L+ + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++ Sbjct: 65 CRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQET 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + L+ DLS+N + V + LT KE+ ++E L T++ L ++ Sbjct: 125 DEDLLQFEDLSLNRRTREVFRGNRAVELTAKEFDLLEYLLSYPRQVFTRDQILEKVWGYD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR KL K + TV G GY LRE Sbjct: 185 FMGDSNIIEVYIRYLRLKLEE-NNEKRLVHTVRGVGYALRE 224 >gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8] gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans A8] Length = 242 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A + L L+ E + V G +G+ + +DA++LDL L I G E Sbjct: 6 RVLIVEDDAHIAELLRLHLRDEGYAVEHAADGNEGMRRLEEGSWDALVLDLMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR+RA++RRS Sbjct: 66 ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSDA 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R A SL + G +S++ A+T EV G R+ LT +E+ ++ + + ++ Sbjct: 126 LERNARIDAGSLALHG-VSLDPVARTAEVDGRRLDLTPREFDLLHFFARHPDKVYSRMDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LN ++ + E ++ I +LR K+ I TVWG+GY Sbjct: 185 LNQVWGYQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGKGY 229 >gi|296169900|ref|ZP_06851512.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895456|gb|EFG75158.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 226 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D+ + ++ + L + V G + ++ D ++LDLGL DI G + Sbjct: 3 RVLVIDDEPQILRALRINLSVRGYEVITASSGAGALRAAAEHKPDVVVLDLGLPDISGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR ++ PV +LS + DKV L +GADDY++KPF +E +AR+RA VRR+ Sbjct: 63 VLAGLR-GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q +I T +V+L AK V G +HLT E+ M+E+L + + +E L + Sbjct: 122 ASELEQPVIETDTFTVDLAAKKVIKNGAEVHLTPTEWGMLEMLVRNRGKLVGREELLKEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + V++ +LR+KL + ++ T G GY E Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGYRFEE 226 >gi|295133762|ref|YP_003584438.1| two component transcriptional regulator winged helix family protein [Zunongwangia profunda SM-A87] gi|294981777|gb|ADF52242.1| two component transcriptional regulator, winged helix family protein [Zunongwangia profunda SM-A87] Length = 222 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ ++ L+ E+F V + D G+ G+EL ++D ++LD L + G Sbjct: 1 MRILIVEDETGISGFLKQGLEEESFAVDIADNGKKGLELALTGKYDLLLLDWMLPGLSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R R TPV L+ ++++ + GLQSGA+DYI KPF+ EEL+ RI+ +R Sbjct: 61 EICRQFRKEDKETPVLFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIKVQLRPKS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ G + +N G ++LT KE+ ++E L K T+ + ++D Sbjct: 121 GE-HAIFSLGPIELNTGTHQAFKNGKEVNLTLKEFALLEYLIRNKERVCTRTKIIEKVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +IDV+I LR+KL + +NYI+TV G GY+ +E+ Sbjct: 180 INFSYNTGVIDVYINALRRKL-DLDQDENYIQTVRGVGYIAKES 222 >gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 234 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 116/218 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 12 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 72 VARRLRADGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 131 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 132 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 191 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 192 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 229 >gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis] Length = 283 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 131/228 (57%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + V+ GE+ +E + E D IILDL L + G E Sbjct: 52 KILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 111 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 112 VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 170 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +A QS + GDL+++ DA V +G +I LT +E++++ L+ +T+E Sbjct: 171 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 230 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ ++ Y+ T G GY LR Sbjct: 231 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLR 278 >gi|294010703|ref|YP_003544163.1| two-component system response regulator CusR [Sphingobium japonicum UT26S] gi|292674033|dbj|BAI95551.1| two-component system response regulator CusR [Sphingobium japonicum UT26S] Length = 228 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD A A + + F V D G DG+ L + AIILD + + G Sbjct: 4 KILVVEDDAATAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGAIILDRMMPAMDGMA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ALR A+I TPV ILS + + ED+V GL SGADDY++KPF EL+AR++ ++RR Sbjct: 64 MLKALRAAEIETPVIILSALGTPEDRVEGLTSGADDYLAKPFAFAELMARVQLLLRRGG- 122 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +VT DL ++L ++ V+ + L +E++++E + +T+ M L Sbjct: 123 -GGGGVVTHLRHADLEMDLLSRRVKRGSRSVDLQPREFRLLEYFLRHPDQVVTRTMLLEG 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D +P +IDV + +LR+KL + G + + TV G GY L Sbjct: 182 VWDYHFDPGTNVIDVHVSRLRRKLDD-GGDRPLLHTVRGMGYRL 224 >gi|225163853|ref|ZP_03726148.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224801534|gb|EEG19835.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 227 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + +E L +++ + + DAI+LDLGL D G Sbjct: 1 MKILIVEDERKVGQFVERALAEQHYTTRLVMTCAAARDALAESPADAIVLDLGLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R A + PV ILS ++ D++ GL GADDY+ KPF+ +EL+AR+R+++RR Sbjct: 61 ALLREWRAAGFNEPVLILSARDAVSDRILGLNLGADDYLPKPFSIDELLARVRSLLRRHA 120 Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + V + LD A+T QG + LT +E+ ++EL LT+ + + Sbjct: 121 SPSAKVTVLEHRGIRLDLLARTATAQGRPVELTNREFALLELFLQNTGRVLTRTLIAEKI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAG---GKNYIETVWGRGY 219 ++ + E +IDV++ +LR+K +A I+TV G GY Sbjct: 181 WEDSYDMETNLIDVYVRRLRQKFEPSASDAFSPPLIKTVRGTGY 224 >gi|196034428|ref|ZP_03101837.1| DNA-binding response regulator [Bacillus cereus W] gi|196042110|ref|ZP_03109394.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218905762|ref|YP_002453596.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228917175|ref|ZP_04080732.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|301056045|ref|YP_003794256.1| response regulator [Bacillus anthracis CI] gi|195992970|gb|EDX56929.1| DNA-binding response regulator [Bacillus cereus W] gi|196027046|gb|EDX65669.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218539918|gb|ACK92316.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228842376|gb|EEM87467.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300378214|gb|ADK07118.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 230 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETTEKTIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|16331577|ref|NP_442305.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1001644|dbj|BAA10375.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 224 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++E+++ LA +EL LK E ++V V G G + + D II++ L + G E Sbjct: 4 RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +++ +E++V GL +GADDYI KPFN +E ARIR +RR+ Sbjct: 64 LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHT 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++ DL N + ++ I LT KE+++++ L LT+E L ++ Sbjct: 124 TSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR KL AAG I+TV G GYVLR+ Sbjct: 184 DFMGDSNIIEVYIRYLRLKL-EAAGEPRLIQTVRGVGYVLRD 224 >gi|284037825|ref|YP_003387755.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283817118|gb|ADB38956.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 223 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ LA I + +E + V V G G+ L + +D IILD+ L + GF Sbjct: 1 MKILLVEDEERLASFIRKGISAEGYEVEVAHDGRTGLSLFRRDIYDIIILDVNLPHMNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R +R + PV +L+ + S+ DK G +GADDY++KPF +EL+ R+RA+ RR Sbjct: 61 DLCRHIRSENEAVPVLMLTALDSMADKSDGFNAGADDYLAKPFEFQELLLRLRALTRRIG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ DL +NLD+KTV G RI LT +EY ++E + L K +++ ++ Sbjct: 121 SRPKQVLQLADLELNLDSKTVTRAGKRIDLTTREYALVEYMMLNKGKVISRVDISERVWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +IDV++ LRKK+ K + T+ G GYVLRE+ Sbjct: 181 LNFDNNSNVIDVYVSYLRKKIDKGFSPK-LLHTIVGMGYVLRED 223 >gi|22537145|ref|NP_687996.1| DNA-binding response regulator CiaR [Streptococcus agalactiae 2603V/R] gi|25011074|ref|NP_735469.1| DNA-binding response regulator CiaR [Streptococcus agalactiae NEM316] gi|76787511|ref|YP_329701.1| DNA-binding response regulator CiaR [Streptococcus agalactiae A909] gi|76797790|ref|ZP_00780056.1| Transcriptional regulatory protein ciaR [Streptococcus agalactiae 18RS21] gi|77405694|ref|ZP_00782781.1| DNA-binding response regulator CiaR [Streptococcus agalactiae H36B] gi|77409201|ref|ZP_00785911.1| DNA-binding response regulator CiaR [Streptococcus agalactiae COH1] gi|77411995|ref|ZP_00788324.1| DNA-binding response regulator CiaR [Streptococcus agalactiae CJB111] gi|77413624|ref|ZP_00789810.1| DNA-binding response regulator CiaR [Streptococcus agalactiae 515] gi|22534008|gb|AAM99868.1|AE014237_2 DNA-binding response regulator CiaR [Streptococcus agalactiae 2603V/R] gi|23095473|emb|CAD46679.1| Unknown [Streptococcus agalactiae NEM316] gi|76562568|gb|ABA45152.1| DNA-binding response regulator CiaR [Streptococcus agalactiae A909] gi|76586866|gb|EAO63358.1| Transcriptional regulatory protein ciaR [Streptococcus agalactiae 18RS21] gi|77160333|gb|EAO71458.1| DNA-binding response regulator CiaR [Streptococcus agalactiae 515] gi|77161951|gb|EAO72933.1| DNA-binding response regulator CiaR [Streptococcus agalactiae CJB111] gi|77172177|gb|EAO75336.1| DNA-binding response regulator CiaR [Streptococcus agalactiae COH1] gi|77175690|gb|EAO78472.1| DNA-binding response regulator CiaR [Streptococcus agalactiae H36B] gi|319745016|gb|EFV97344.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 226 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 131/227 (57%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIEDD +L++S+ L + + D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLIEDDLSLSNSVFDFLDDFADVMQIFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I+TPV I++ SI+DK +G GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKGITTPVLIMTAKESIDDKGQGFDLGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ GD+ V++ + V + L GKE+ ++ +N L K + ++ Sbjct: 121 KFNDNSLIYGDIRVDMSTNSTFVNQTEVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +++V++ K+RKKL +N ++T+ GY+L+ D Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTLFSEN-LQTLRSVGYILKHVETD 226 >gi|322389246|ref|ZP_08062806.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321143990|gb|EFX39408.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 251 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 27 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGIYDLILLDLMLPEKDGF 85 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 86 HVLKELREKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 145 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G+L VNL + V G + L GKE+ ++ +N L K + L+ Sbjct: 146 KVNENTLNYGNLKVNLSTNSTYVDGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 205 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE---TVWGRGYVLRE 223 + + +++V++ K+RKKL G +++E T+ GY+L++ Sbjct: 206 FDSDTTISVVEVYVSKIRKKLK----GTDFVESLQTLRSVGYILKD 247 >gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 116/218 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMRGGIDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRSEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|194292693|ref|YP_002008600.1| response regulator in two-component regulatory system with cops, regulation of copper resistance [Cupriavidus taiwanensis LMG 19424] gi|193226597|emb|CAQ72548.1| response regulator in two-component regulatory system with CopS, regulation of copper resistance [Cupriavidus taiwanensis LMG 19424] Length = 241 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 130/237 (54%), Gaps = 7/237 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V + G DG + +D IILD+ L D+ G+ Sbjct: 1 MKLLVVEDESKTGEYLRQGLTEAGFVVDLVHNGLDGQHMAMTEPYDLIILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ALR + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R ++R R Sbjct: 61 RIVQALRAGQNPVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLR--R 118 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G AQ I DL ++L + G RI LT KE+ ++ELL+ R+ L + + + Sbjct: 119 GTAQMTLDRIQVADLVLDLTRRRATRAGRRITLTSKEFALLELLARRRGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDETCEYL 233 ++D + + +IDV I +LR K+ + + I+TV G GYVL A DE L Sbjct: 179 VWDMNFDSDSNVIDVAIRRLRAKIDDGFDAR-LIQTVRGMGYVLEAPEAADEAGAPL 234 >gi|13474809|ref|NP_106379.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14025565|dbj|BAB52165.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L++EDD A I + F V G DG+ K FD I LD L + G Sbjct: 2 IKVLVVEDDADTADEIVDEFCAAGFEVERAATGPDGLTKAKTQAFDVITLDRLLPGLDGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR + TPV +LS +SS+++++RGL++G DDY+ KPF+ EL RI + RR+ Sbjct: 62 SLLENLRGGGVDTPVMVLSALSSVDERIRGLRAGGDDYLVKPFSLAELRTRIEVLARRTP 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL ++L +TV + L +E ++E L +T+ M H++ Sbjct: 122 DQRATVLRLADLELDLLTRTVRRGTRIVELVPREITLLEYLLRHAEQVVTRGMLFEHVWH 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R +P ++DV I +LR+K+ + A I T+ GRG+VLR Sbjct: 182 YRFDPGTNLVDVHIGRLRRKI-DLADELPLIHTIRGRGFVLR 222 >gi|183219817|ref|YP_001837813.1| transcriptional regulatory protein CreB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909952|ref|YP_001961507.1| two component response regulator sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774628|gb|ABZ92929.1| Sensor protein of a two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778239|gb|ABZ96537.1| Transcriptional regulatory protein CreB [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 225 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 131/228 (57%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIED+ + +I++ L++E F++ + G G+++ + I+LD+GL D GF Sbjct: 2 IKILLIEDEPGIQETIQIALEAEGFSLSIAPTGIQGLQMLA-DDISLILLDIGLPDQSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+++R A S PV L+ SS DKV GL+ GADDYI KPF+ EL+ARIRAI+RR++ Sbjct: 61 EVLKSIRKAA-SIPVIFLTARSSEIDKVLGLEIGADDYIVKPFSPRELLARIRAILRRTQ 119 Query: 121 GHAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L++ L ++LD K V G ++L+ EY+ +EL T+E ++ Sbjct: 120 N---PLVLEQKSNQKLRISLDKKLVYYNGKNLNLSPYEYKTMELFFKWPGRIFTREEIMD 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ ++ + +D I +R + + IET G+GY L+E Sbjct: 177 SVWTEPEDSFDRAVDTVIKNIRARFKEMDPNFDPIETRRGQGYGLKET 224 >gi|306820883|ref|ZP_07454503.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550997|gb|EFM38968.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 233 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 135/231 (58%), Gaps = 7/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLT-DIP 58 M+IL++ED+ ++ + L LK E ++V GE+ IEL K + + +LD+ L I Sbjct: 1 MKILVLEDEFSIRSFVTLNLKREGYDVIEAGSGEEAIELYDKNQDINIAVLDVMLPGSID 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF+VL+ +R + + +L+ ++ EDKV GL+ GADDYI+KPF+ +EL+ARIRA++RR Sbjct: 61 GFDVLKHIRTRSQNIGIIMLTARTNEEDKVLGLEYGADDYINKPFSPKELIARIRALIRR 120 Query: 119 SRG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +G+ ++N + I LT KE++++EL K +L+++ Sbjct: 121 VTSIDMVKEEVEKVHSGEFTLNFSERKFFKGEEEIELTPKEFEILELFMKNKGKSLSRDE 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++ ++K++DV I ++R K+ + +Y++TVWG GY E+ Sbjct: 181 ILDRIWGKNYYGDLKVVDVNIRRIRMKIEKDSSNPSYLKTVWGYGYRWEED 231 >gi|260577651|ref|ZP_05845587.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258604197|gb|EEW17438.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 240 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPELDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 74 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LTG E++++ L+LR LT+ + Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTGTEFELLVALALRPGQVLTRHDLVT 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235 >gi|228923822|ref|ZP_04087100.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835951|gb|EEM81314.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 225 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K +TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTDNVSSKDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQKEINFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D++I +RKKL + YI+T+ GRGY + Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSM 223 >gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] Length = 234 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIPG 59 RIL++ED+ + + LK + V GE+ I++ + FD +LD+ + + G Sbjct: 3 RILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGMDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 FEV R +R S + +L+ S DKV GL GADDY++KPF+ ELVAR+ A+ RR Sbjct: 63 FEVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDALHRRV 122 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ A S + +G +N+ ++TV G + LT EYQ++E NT L ++ Sbjct: 123 TVAAEKAQAPAPSELKSGPFVLNMKSRTVSKNGRVLELTQVEYQILEYFFNNPNTALGRQ 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LN ++ ++KI+DV I +LR KL +A ++ TVWG GY Sbjct: 183 DILNKVWGEGYFGDIKIVDVNIRRLRMKLEDAPSKPEFLLTVWGFGY 229 >gi|315173321|gb|EFU17338.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] Length = 228 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 130/226 (57%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K LA +EL LK E + V G G+E E+DAI+LDL L ++ G EV Sbjct: 4 ILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLMLPELNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116 R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA I Sbjct: 64 CRRVRQVK-NTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+ I DL++ + + V I LT +EY+++ L N L +++ LN Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + G ++YI+TV G GYV+R Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227 >gi|296876734|ref|ZP_06900782.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] gi|296432236|gb|EFH18035.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] Length = 251 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD L++S+ L + V D GE+G+ + +D I+LDL L + GF Sbjct: 27 IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGIYDLILLDLMLPEKDGF 85 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 86 HVLKELREKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 145 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G+L VNL + V G + L GKE+ ++ +N L K + L+ Sbjct: 146 KVNENTLNYGNLKVNLSTNSTYVDGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 205 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE---TVWGRGYVLRE 223 + + +++V++ K+RKKL G +++E T+ GY+L++ Sbjct: 206 FDSDTTISVVEVYVSKIRKKLK----GTDFVESLQTLRSVGYILKD 247 >gi|167565429|ref|ZP_02358345.1| two component heavy metal response transcriptional regulator, winged helix family protein [Burkholderia oklahomensis EO147] gi|167575130|ref|ZP_02368004.1| two component heavy metal response transcriptional regulator, winged helix family protein [Burkholderia oklahomensis C6786] Length = 232 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 133/225 (59%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + ++ L E + V GE+G + Y++D ++LD+ L + GF Sbjct: 1 MKVLIVEDEAKVVDYLKSGLADEGWVVDAATDGEEGAWMAVEYDYDVVVLDVMLPKVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR A TPV +L+ ++D+VRGL+ GADDY++KPF+ ELV R+RA+ RR+R Sbjct: 61 GVLRALR-AHRDTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELVERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L ++ G R+ LT +E+Q++ +L+ R+ L+K ++D Sbjct: 120 VQESTLISIGDLRVDLISRRATRNGVRLDLTAQEFQLLGVLARRRGEVLSKTTITELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++ I +LR KL K + T+ G GYVL E A Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVLEERA 223 >gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 251 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A+ + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 14 RVLIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGNWDALILDLMLPGVDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 74 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRADA 133 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +R A SL + G L ++ + V G RI LT +E+ ++ + R ++ Sbjct: 134 MAKDARMEAGSLNLAG-LFIDPLTREASVNGKRIELTPREFDLLYFFASRPGKVFSRMDL 192 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LN ++ + E ++ I +LR K+ + I TVWGRGY Sbjct: 193 LNAVWGYQHEGYEHTVNTHINRLRAKIEDDPAQPARILTVWGRGY 237 >gi|29828737|ref|NP_823371.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29605841|dbj|BAC69906.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 262 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 129/244 (52%), Gaps = 18/244 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++DD +A + + + E ++ GE+ + L + D ++LDL L DI GF Sbjct: 19 VRLLVVDDDPPIADLVATVARYEGWDAVTAYSGEEALRLAAEFPPDIVVLDLMLPDIDGF 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + PV L+ ++ D+V GL G DDY+ KPF EEL+AR+R ++RRS Sbjct: 79 GVLDRLRRSGTMVPVVFLTARDTVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 138 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +S++ DL+++ D + V + LT EY+++ L + LTK L+H+ Sbjct: 139 GPGFQRSVLRVADLTMDEDTRQVRRGDRLLTLTPTEYEVLRYLMRKSPAVLTKAQILDHV 198 Query: 179 YDGRDEPEVKIIDVFICKLRKKL----------------SNAAGGKNYIETVWGRGYVLR 222 ++ ++++ + +LR+KL + AG + I TV G GYV+R Sbjct: 199 WEYGFGGRSNVVELVVSRLRRKLDEADAADAGDVAAEDSAADAGREPLIHTVRGFGYVIR 258 Query: 223 ENAK 226 A+ Sbjct: 259 PAAR 262 >gi|134291089|ref|YP_001114858.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134278|gb|ABO58603.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 226 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 132/223 (59%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 M+ILL+ED++ +A ++ L V D G DG+ L +DAI+LD L I G Sbjct: 1 MKILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGESYDAIVLDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ ALR A PV ILS + +++++RGL++G DDY+ KPF+ E+VAR+ A+ RRS Sbjct: 61 LKIVAALRAAGSKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRS 120 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + + DLS++L ++ V G I L +E++++E L +T+ M L ++ Sbjct: 121 QDNGFDTALKLADLSIDLLSRKVTRAGKPIVLKPREFKLLEYLMRHAEQVVTRTMLLENI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P+ +IDV + KLR+K+ + ++ + T+ GY+L Sbjct: 181 WEYHFDPQTNVIDVHVSKLRQKI-DTGFDRSLLRTIRNAGYML 222 >gi|47567331|ref|ZP_00238044.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47555952|gb|EAL14290.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 225 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTQEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+ I DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 225 >gi|56476560|ref|YP_158149.1| two component response regulator [Aromatoleum aromaticum EbN1] gi|56312603|emb|CAI07248.1| Two component response regulator [Aromatoleum aromaticum EbN1] Length = 226 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + G DG+ L ++D ++LD+ L + G+ Sbjct: 1 MKILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALDGDYDLMVLDVMLPSLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R + PV L+ +ED+VRGL+ GADDY+ KPF EL+AR+R ++RR + Sbjct: 61 GVLQTVRRSGRDMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++L + V G +I LT KE+ ++ELL R+ L + + + ++D Sbjct: 121 AKEPEVYSAGDLELDLLRRRVTRAGVKIDLTSKEFALLELLLRRQGEVLLRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+V + +LR K+ + K I TV G GYVL Sbjct: 181 MNFDSDTNVIEVAVRRLRAKVDDPFEPK-LIRTVRGMGYVL 220 >gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes] gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] Length = 240 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G Sbjct: 6 VKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 66 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 126 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 186 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 240 >gi|309776804|ref|ZP_07671778.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915552|gb|EFP61318.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 222 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ LA + L + F GE + +DA +LDL L D GF Sbjct: 1 MRLLVIEDNRELATLMTEQLHTFGFVCDSAHDGETADQKIHDTAYDAALLDLNLPDTDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L++ R + TPV I++ ++++V+GLQ G DDYI+KPF EEL ARI+A++RR R Sbjct: 61 DLLKSWRNQAVDTPVLIVTARDDLDERVKGLQLGGDDYITKPFEFEELSARIQAVIRRFR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I L +N +++V + H+I L+ KEY ++E ++ + ++ H+YD Sbjct: 121 GRPTADIKVEGLIINPASRSVSLDHHKILLSPKEYDILEYIASQHPRVISNYEIAEHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +I V + +RKKL K+ + G+GY L Sbjct: 181 EDFDPFSGVIRVHMANIRKKL--MLDRKSILCNEKGKGYYL 219 >gi|294341285|emb|CAZ89694.1| Transcriptional regulatory protein cusR [Thiomonas sp. 3As] Length = 251 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L+ F V G DG +D I+LD+ L DI G+ Sbjct: 25 MKLLIVEDEVKTGEYLQQGLRESGFVVDWARNGLDGHHHAMIAPYDLIVLDVMLPDIDGW 84 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR+LR + +TPV L+ ++ED+V+GL+ GADDY+ KPF EL+AR+R ++RR R Sbjct: 85 RILRSLRESGNNTPVLFLTARDAVEDRVKGLELGADDYLVKPFVFTELLARVRTLLRRGR 144 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + DL ++L + G RI+L+ KE+ ++ELL R+ L + + + ++ Sbjct: 145 APTQIDQLEVADLVLDLPRRRATRAGTRINLSSKEFALLELLIRRQGEVLPRSLIASQVW 204 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I+TV G GY L Sbjct: 205 DMNFDSDTNVIDVAIRRLRAKVDDGFEPK-LIQTVRGMGYTL 245 >gi|30265130|ref|NP_847507.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530640|ref|YP_021989.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187941|ref|YP_031194.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65317076|ref|ZP_00390035.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869987|ref|ZP_02214644.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167641774|ref|ZP_02400016.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170689385|ref|ZP_02880578.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|190569222|ref|ZP_03022118.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227817862|ref|YP_002817871.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229603464|ref|YP_002869323.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686468|ref|ZP_05150327.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724467|ref|ZP_05186251.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254735675|ref|ZP_05193382.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744239|ref|ZP_05201919.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254750967|ref|ZP_05203006.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254756991|ref|ZP_05209019.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259807|gb|AAP28993.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505788|gb|AAT34464.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181868|gb|AAT57244.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714310|gb|EDR19830.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510257|gb|EDR85661.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170666681|gb|EDT17451.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|190559662|gb|EDV13651.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227004971|gb|ACP14714.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229267872|gb|ACQ49509.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 225 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSGC 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + H + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 225 >gi|260462544|ref|ZP_05810751.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259031740|gb|EEW33009.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 219 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LLIEDD L ++ + ++ V + T LG G L + ++ ++LDL L D G Sbjct: 1 MRVLLIEDDPVLGEAVRDHIAADGHAVDWSTTLGGAGDHL-RVVSYELVLLDLHLPDGKG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E L+ LR TPV IL+ + D++ GL SGADDY+ KPF+ EL AR+ A+ RR Sbjct: 60 LEFLKTLRRKGADTPVIILTARDQLSDRIAGLNSGADDYLVKPFHLGELSARLAAVARRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ L+ G L ++ A+ V V G LT +E+ ++E R T+ K + LY Sbjct: 120 AGNPNPLVRLGLLEIDQAARRVVVNGAEAMLTSREWAVLEQFLRRPGMTIGKNQIEDALY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E ++V++ +LRKK+ G+ + TV G GY L Sbjct: 180 AFGAEIESNTVEVYVSRLRKKI-----GRGALTTVRGLGYRL 216 >gi|69247350|ref|ZP_00604314.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|227550602|ref|ZP_03980651.1| response regulator [Enterococcus faecium TX1330] gi|257880266|ref|ZP_05659919.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257883065|ref|ZP_05662718.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257888626|ref|ZP_05668279.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257891351|ref|ZP_05671004.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257893652|ref|ZP_05673305.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257896996|ref|ZP_05676649.1| transcriptional regulator [Enterococcus faecium Com12] gi|257898937|ref|ZP_05678590.1| transcriptional regulator [Enterococcus faecium Com15] gi|258614457|ref|ZP_05712227.1| DNA-binding response regulator [Enterococcus faecium DO] gi|260560436|ref|ZP_05832610.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261208954|ref|ZP_05923359.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289565234|ref|ZP_06445686.1| response regulator CsrR [Enterococcus faecium D344SRF] gi|293378688|ref|ZP_06624846.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293556340|ref|ZP_06674922.1| DNA-binding response regulator [Enterococcus faecium E1039] gi|293560677|ref|ZP_06677161.1| DNA-binding response regulator [Enterococcus faecium E1162] gi|293569250|ref|ZP_06680548.1| DNA-binding response regulator [Enterococcus faecium E1071] gi|293571128|ref|ZP_06682167.1| DNA-binding response regulator [Enterococcus faecium E980] gi|294615033|ref|ZP_06694922.1| DNA-binding response regulator [Enterococcus faecium E1636] gi|294618641|ref|ZP_06698179.1| DNA-binding response regulator [Enterococcus faecium E1679] gi|294623216|ref|ZP_06702091.1| DNA-binding response regulator [Enterococcus faecium U0317] gi|314937954|ref|ZP_07845267.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314940986|ref|ZP_07847888.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314947557|ref|ZP_07850969.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314953136|ref|ZP_07856091.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314993016|ref|ZP_07858410.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314995301|ref|ZP_07860411.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|68194873|gb|EAN09345.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|227180310|gb|EEI61282.1| response regulator [Enterococcus faecium TX1330] gi|257814494|gb|EEV43252.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257818723|gb|EEV46051.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257824680|gb|EEV51612.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257827711|gb|EEV54337.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257830031|gb|EEV56638.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257833561|gb|EEV59982.1| transcriptional regulator [Enterococcus faecium Com12] gi|257836849|gb|EEV61923.1| transcriptional regulator [Enterococcus faecium Com15] gi|260073438|gb|EEW61766.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260076993|gb|EEW64715.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289163055|gb|EFD10903.1| response regulator CsrR [Enterococcus faecium D344SRF] gi|291587956|gb|EFF19806.1| DNA-binding response regulator [Enterococcus faecium E1071] gi|291592164|gb|EFF23784.1| DNA-binding response regulator [Enterococcus faecium E1636] gi|291595114|gb|EFF26453.1| DNA-binding response regulator [Enterococcus faecium E1679] gi|291597373|gb|EFF28549.1| DNA-binding response regulator [Enterococcus faecium U0317] gi|291601508|gb|EFF31778.1| DNA-binding response regulator [Enterococcus faecium E1039] gi|291605351|gb|EFF34801.1| DNA-binding response regulator [Enterococcus faecium E1162] gi|291608810|gb|EFF38093.1| DNA-binding response regulator [Enterococcus faecium E980] gi|292642616|gb|EFF60768.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|313590486|gb|EFR69331.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313592467|gb|EFR71312.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313594804|gb|EFR73649.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313600178|gb|EFR79021.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313642677|gb|EFS07257.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313646000|gb|EFS10580.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 228 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K LA +EL LK E +N V G G++ E+DAI+LDL L ++ G EV Sbjct: 4 ILIIEDEKNLARFVELELKHEGYNAEVHYNGRTGLDAALNNEWDAILLDLMLPELNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116 R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA I Sbjct: 64 CRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+ I DL++ + + V I LT +EY+++ L N L +++ LN Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRGNEVIELTKREYELLLTLMENVNVVLARDVLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + G ++YI+TV G GYV+R Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227 >gi|228987786|ref|ZP_04147896.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771944|gb|EEM20400.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 230 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL ++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETTEKMIQIGDLMIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803] gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803] Length = 228 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +IL+++DDK + + I + L++E T ED IE + E FD IILD+ + ++ Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 61 GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 Query: 119 SRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +S++ GDL+VN D + V ++G + LT KE+ ++ELL+ K L+ Sbjct: 120 FKKYNTNTDNDKSILEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVA 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 180 KIYEAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226 >gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 239 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G LS++ A+ V G RI LT +E+ ++ + ++ Sbjct: 126 LARDSRIDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 231 >gi|257885311|ref|ZP_05664964.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257821163|gb|EEV48297.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 228 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K LA +EL LK E +N V G G++ E+DAI+LDL L ++ G EV Sbjct: 4 ILIIEDEKNLARFVELELKHEGYNTEVHYNGRTGLDAALNNEWDAILLDLMLPELNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116 R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA I Sbjct: 64 CRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+ I DL++ + + V I LT +EY+++ L N L +++ LN Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRGNEVIELTKREYELLLTLMENVNVVLARDVLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + G ++YI+TV G GYV+R Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227 >gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A] gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A] gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 243 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGINAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL +N D+ V G + L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223 + I++ +I LRKK + + GGK IET G GY++RE Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIRE 240 >gi|327402249|ref|YP_004343087.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327317757|gb|AEA42249.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 225 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 128/226 (56%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + SIE LK EN V D ++ YE+D I+LD+ L D G Sbjct: 1 MKILVVEDEPEMLESIERALKQENALVESATNLNDALDKALIYEYDCILLDINLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ L+ S V ILS +S++DK+ GL GADDY++KPF+ EL+ARIR+IVRR + Sbjct: 61 ELLQELKNQGKSDGVLILSARNSLDDKLEGLNLGADDYLTKPFHFSELIARIRSIVRRKK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 +L G+L V++ + + + G I L KE+ + L K ++K H++ Sbjct: 121 FDGNALFEIGNLQVDITNQALSMNGEPIVLNRKEFAIFMYLVSNKGRLVSKTALAEHVWG 180 Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D DE + + I I LRKK++ G I++++G GY L E+ Sbjct: 181 DNIDESDNFEFIYSQIKNLRKKMNEMDTGLE-IQSIYGVGYKLIES 225 >gi|323487492|ref|ZP_08092786.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum WAL-14163] gi|323694424|ref|ZP_08108595.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323399174|gb|EGA91578.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum WAL-14163] gi|323501505|gb|EGB17396.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 232 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ I + K E+D ++LD+ L GFE Sbjct: 3 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIRMAKETEYDIVLLDVMLPKFDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R P+ +++ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 63 VCQAIREFS-EMPIIMVTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNAK 121 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ GDL ++ D++ V + I+LT KE+ ++ELL N ++E Sbjct: 122 KSKKESQSSGKVVQAGDLKLDTDSRRVFIAEKEINLTAKEFDLLELLVCNPNKVYSREEL 181 Query: 175 LNHLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + +V+ +DV + +LR+K+ + Y+ T WG GY R Sbjct: 182 LRFVWGNKAAAGGDVRTVDVHVRRLREKIEPSPSEPKYVHTKWGVGYYFR 231 >gi|210614641|ref|ZP_03290252.1| hypothetical protein CLONEX_02466 [Clostridium nexile DSM 1787] gi|210150631|gb|EEA81640.1| hypothetical protein CLONEX_02466 [Clostridium nexile DSM 1787] gi|295108131|emb|CBL22084.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAIILDLGLTDIP 58 ++ILL+EDD L SI+ LK E ++V + GE + L Y +D I+D L I Sbjct: 2 IKILLMEDDLNLCQSIQQALKKEGYSVDCCNDGESSMIYALNTDYGYDLAIVDRMLPIID 61 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +++A+R +I PV I++GMS+++D+V GL SGADDY+ KPF+ EL+AR+RA+ RR Sbjct: 62 GLTIIKAMRRKQIQIPVIIITGMSALDDRVDGLDSGADDYLIKPFHIRELMARVRALTRR 121 Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ DL + + V G + LT KE +++ +L + T+ ++E + Sbjct: 122 PQQIQEMGMLSYADLHFDYPNRKVTCNGQELILTAKETELLSVLMKQPETSFSREQLVLK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + E +D +I LRK+L K I T++G GY L Sbjct: 182 VWGSNADIEPGNVDNYISFLRKRLRELH-SKCAITTIYGSGYRL 224 >gi|254423455|ref|ZP_05037173.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190944|gb|EDX85908.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 226 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ ED+ +A I+ L + F V + I FD +ILDLGL D G + Sbjct: 3 KILITEDEPRIASFIKKGLNAHGFTTEVAITAQQAIAQTLEASFDLLILDLGLPDKDGLQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ LR + P+ IL+ I DKV GL+ GADDY++KPF EEL+AR+R +R++ Sbjct: 63 VIEELRGQGATLPIIILTARDDIHDKVTGLEGGADDYVTKPFRFEELLARVRVRLRQAPA 122 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ ++S++L + V+V G + L +E+ + E L++E L Sbjct: 123 AGSAATGNDQMLWASNVSLDLLTRRVQVSGEIVDLPAREFTLAETFFRHPGQVLSREQLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ P I+DV++ LRKKL G + IETV G GY LR++ Sbjct: 183 DRVWGYDYSPGSNIVDVYVGYLRKKL-----GADLIETVRGIGYRLRQS 226 >gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes FSL R2-561] gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes J0161] gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] Length = 236 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G Sbjct: 2 VKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 62 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 122 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 236 >gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 234 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 136/237 (57%), Gaps = 14/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 +IL++ED++ +A ++L L E + + + G DG L KF+E +D ++LD+ L ++ G Sbjct: 3 KILIVEDEQQIARVLQLELGFEGYETTIANTGTDG--LLKFHEDEYDLVLLDVMLPELNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ +R + PV +L+ S+IEDKV GL GA+DYI+KPF +EL+ARIR +R S Sbjct: 61 LEVLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALRFS 120 Query: 120 RGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL--TKE 172 A S+ DLS+N + V +I LT +E+ + LL K+ L ++E Sbjct: 121 HKSAPEPTSSSVHTFQDLSLNEQTREVTRNALQIDLTPREFDL--LLHFMKHAKLVQSRE 178 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 LN ++ + ++DV++ LR+KL + TV G GYVL+E A +ET Sbjct: 179 QLLNAVWGYDYYGDTNVVDVYVRYLRQKLEVNLNLPPLLHTVRGVGYVLKE-ASNET 234 >gi|118577356|ref|YP_899596.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504861|gb|ABL01343.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 224 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ LLIED++ +A I+ L+ N V + G +G+ L + E+ +ILDLG+ +I G Sbjct: 1 MKYLLIEDERKIAGFIKRGLEEGNCQVVIVGDGAEGLRLAQTGEYALVILDLGIPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR PV IL+ E+ V GL++G+DDY+ KPF EL ARI A++RR+ Sbjct: 61 SVLKELRSTGNQVPVLILTARKLPEEVVAGLEAGSDDYMGKPFAFRELRARIAALLRRAG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S +V G+L ++ G+ I L+ KEY ++E + N LT+ M ++ + Sbjct: 121 RNRGSEVVFGELKLDPVTHRFWRSGNEISLSEKEYCLMEYMIRNPNQILTRSMIASNCWV 180 Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + IIDV++ LR+K+ K I TV G+GY+LRE Sbjct: 181 NTFEGKFSNIIDVYVTYLRRKVDVGYPTK-MIHTVRGKGYILRE 223 >gi|302669412|ref|YP_003829372.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302393885|gb|ADL32790.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 229 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++A+A + L+ +F V + + G+ G+E EFD IILDL L + GFE Sbjct: 3 RILIVEDEEAIADLEKDYLELSDFEVKIENTGDAGLETALAEEFDLIILDLMLPGMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 V + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R SR Sbjct: 63 VCKHIREKK-DVPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYSR 121 Query: 121 ----GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 GH + + L ++ A+ V V T KE+ ++ L+ N TKE Sbjct: 122 LVGSGHENNDFVEIRGLKIDKTARRVYVDDEEKSFTTKEFDLLTFLAENPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 RKIWNMDSIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRFK 228 >gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 233 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F + + GE ++ + D I+LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECFETKIVNDGEQALKEFNTFHPDLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R P+ +LS DKV GL+ GADDYI KPF+ +ELVAR+RA++RR + Sbjct: 66 VCREIR-HNSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124 Query: 121 ----GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+ V+ DL++NL +V G ++ + KE +++ L+ N T+E L Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +H++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDHPQWS--LSTVWGIGY 226 >gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 306 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 13/230 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++A+ + + L+ E F V G+ + D ++LD+ L DI GF Sbjct: 79 VRVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGF 138 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 V LR A P L+ + +DKVRGL G DDY++KPF+ ELVAR+RAI+RR+ Sbjct: 139 AVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAG 198 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKE 172 GH L + LD +T EV+ G + LT EY++++ L LT+ Sbjct: 199 SPVTGDGHPAPLRFA---DLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRA 255 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+H++ E +++ +I LR+K+ N I TV G GYVLR Sbjct: 256 QLLDHVWGHDFSGEGGVLETYISYLRRKVDNVE--PPLIHTVRGVGYVLR 303 >gi|290959131|ref|YP_003490313.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648657|emb|CBG71770.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 249 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ ++ + + L+ E + + G ++ + + DA++LD+ L D+ G Sbjct: 23 VRVLVVDDELSITELLSMALRYEGWQIRSAGDGTGALQTARDFRPDAVVLDMMLPDMDGL 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 83 TVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 142 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S++V GDL ++ D+ V G IHLT E++++ L L+K L+ Sbjct: 143 AADRRSDSVLVVGDLMLDEDSHEVSRAGANIHLTATEFELLRFLMRNPRRVLSKAQILDR 202 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+K+ AG + I T G GY+++ Sbjct: 203 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 245 >gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes 10403S] gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes FSL J2-003] gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] Length = 236 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G Sbjct: 2 VKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 62 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 122 GKAEIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 236 >gi|182438910|ref|YP_001826629.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779565|ref|ZP_08238830.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178467426|dbj|BAG21946.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659898|gb|EGE44744.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 219 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED++ +A ++ L++ F V + G+ + FD ++LD+GL GF Sbjct: 3 RILIAEDEERIASFVQKGLRANGFTTVVAEDGDLALGHALTGGFDLMVLDIGLPGRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 VLR LR A+++ PV +L+ S+ D V GL+ GADD+++KPF EEL+AR+R R +R Sbjct: 63 VLRELREARVTLPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRQRTAAR 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ +G L+++L + + LT +E+ ++E+ L++E L+H++ Sbjct: 123 APEVTMLRSGSLALDLRTRRARADDRTVDLTAREFVLLEMFLRHPGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ LR+KL G +ET+ G GY L Sbjct: 183 YDFDPGSNIVDVYVRALRRKL-----GAERLETIRGMGYRL 218 >gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 277 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 44 RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 103 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 104 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 163 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G LS++ A+ V G RI LT +E+ ++ + ++ Sbjct: 164 LARDSRIDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 222 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 223 LNAVWGYQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 269 >gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+ +E ++D ++LD+ L I G + Sbjct: 5 ILLVEDDSSIGEMVESYLTMEGFQVVLAKDGEEALERFAERDYDLVLLDMMLPKISGMDF 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R K PV I+S DK GL GADDYI+KPF+ EL AR++A +RR + Sbjct: 65 LKKIR-EKSHVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAIRRVTAY 123 Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +I +L ++LD TV G I LT KE Q+++L TK+ Sbjct: 124 VIAPPTEQNKIIRVHELEMDLDHLTVTKNGQEIKLTAKELQILKLFMTNPKKVFTKQHIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +I+V + +LR K+ + YI+T+WG GY L E Sbjct: 184 TSVWNDDYFGDENVINVHMSRLRDKIEDQPSDPQYIKTLWGIGYRLGE 231 >gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 225 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 116/218 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAEGHTIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|332654953|ref|ZP_08420695.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] gi|332516296|gb|EGJ45904.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] Length = 229 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAIILDLGLTDIP 58 ++ILL+EDD L SI+ LK E ++V + GE + L Y +D I+D L I Sbjct: 2 IKILLMEDDLDLCQSIQQALKKEGYSVDCCNDGESSMIYALNTDYGYDLAIVDRMLPIID 61 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +++A+R +I PV I++GMS+++D+V GL SGADDY+ KPF+ EL+AR+RA+ RR Sbjct: 62 GLTIIKAMRRKQIQIPVIIITGMSALDDRVDGLDSGADDYLIKPFHIRELMARVRALTRR 121 Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ DL + + V G + LT KE +++ +L + T+ ++E + Sbjct: 122 PQQIQEMGMLSYADLHFDYPNRKVTCNGQELILTAKETELLSVLMKQPETSFSREQLVLK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + E +D +I LRK+L K I T++G GY L Sbjct: 182 VWGSNADIEPGNVDNYISFLRKRLRELH-SKCAITTIYGSGYRL 224 >gi|262089655|gb|ACY24751.1| two-component response regulator [uncultured organism] Length = 222 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ L +IE L+S +V G+ + + +FDA+ LDL L + G Sbjct: 1 MRILLVEDNEDLGEAIEKRLRSAGHSVEWVRDGDHVVSTAESDQFDAVTLDLMLPNRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR K + P+ +++ S I+DKV L GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 GLIAELRKRKFNAPILVITARSEIDDKVSLLDLGADDYLVKPFDLRELEARLRALLRRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S I G+L+++L A V G + L +E++++E+L + KE +N L++ Sbjct: 121 GQASSSIEVGNLALDLAALNASVDGKALELGRREFRLLEILVSHVGKVVPKERLMNQLFN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++ I +LRKKL G I TV G GY+LR Sbjct: 181 FDESVSINALELHISRLRKKLD---GANVEIGTVRGVGYLLR 219 >gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 235 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G+ +L FD IILD+ L ++ G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKPFDFIILDVMLPNLDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR KI TP+ +L+ D++ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLEP 122 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ ++ G + +L V V G +I LT KE++++ RK + ++ Sbjct: 123 RQQAREEDQPAEILQIGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRDT 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 LN +++ + + +I+DV I LR+KL Y+ TV G GY +E + Sbjct: 183 LLNRIWNFDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKFQEPTQ 235 >gi|225388704|ref|ZP_03758428.1| hypothetical protein CLOSTASPAR_02440 [Clostridium asparagiforme DSM 15981] gi|225045216|gb|EEG55462.1| hypothetical protein CLOSTASPAR_02440 [Clostridium asparagiforme DSM 15981] Length = 226 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD+ L ++++L L+ + V G+D + Y +D I+LD L + G Sbjct: 1 MKILLVEDDRDLCNTVKLQLERAGYETDVCYQGQDALFYANQYPYDVIVLDRMLPQVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR +I+TPV I + + + D++ GL +GADDY+ KP+ EL+ARIRA+ RR Sbjct: 61 TILQGLRRKQIATPVIITTALDGVNDRIDGLDAGADDYLVKPYAVGELLARIRAVTRRPG 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 HA + D+ ++ D + + G + L+ +E ++E L L +E+ L +++ Sbjct: 121 NFHAGAEKCFADIRLDADRRELSGPGGTVRLSKRETALMEYLIRGAGQILPREIILTYIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E +D +I LR++L + G I T+ G GY L+E Sbjct: 181 GVDAEVEDGNLDNYIYFLRRRL-RSVGASAQIVTIHGTGYQLKE 223 >gi|332706802|ref|ZP_08426863.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332354686|gb|EGJ34165.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 225 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + ++ L +++ V V G+ G EL + + +D I+LD+ L + G Sbjct: 1 MRILLVEDDQRITDALAEDLTDQHYVVDVAHDGQIGKELVESFSYDLILLDVMLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR TP+ +L+ +I DK+ GL +GADDY+ KPF+ EL ARIRA++R R Sbjct: 61 TLCRKLRSQGDLTPILMLTARDTISDKIVGLDAGADDYLVKPFDLGELSARIRALLR--R 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G+ V S+ LD T EV + + L+ KEY ++E ++ L +L Sbjct: 119 GNTTLPPVLEWDSLRLDPSTCEVFYEDRLLSLSPKEYALLEFFLRHPRRVFSRAQILENL 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + PE + I LR+KL A + IETV+G GY L+E Sbjct: 179 WSFERLPEEATVKAHIRGLRQKLEAAGAPSDLIETVYGLGYRLKEKP 225 >gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 239 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ +I TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I +L + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVSESPDEESIKIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKVDE 239 >gi|297559280|ref|YP_003678254.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843728|gb|ADH65748.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 122/220 (55%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++DD + ++ + L++ +V G + L D ++LDLGL D+ G Sbjct: 1 MRVLVVDDDMQIIRAMRINLRARGHDVDTAADGASALRLAADNHPDVVLLDLGLPDMEGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV++ LR P+ +LS S +KVR L SGADDY++KPF +EL+AR+RA RRS Sbjct: 61 EVIQRLR-GWSQVPIIVLSARHSAGEKVRCLDSGADDYVTKPFGMDELLARMRAAERRSV 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R ++ T +V+L AK V +G + LT E+ ++E+L+ +++ L+ ++ Sbjct: 120 RVDEAPVVRTPSFTVDLGAKRVLREGEEVRLTPTEWHILEILARHAGQLVSQRQLLHDVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + V++ +LR+KL Y+ T GRGY Sbjct: 180 GPAYQSETNYLRVYMAQLRRKLEPDPACPRYLITEAGRGY 219 >gi|254446238|ref|ZP_05059714.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198260546|gb|EDY84854.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 224 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED +A+ + L + V + G++ L + +E+DA I D+ + G Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R LR TP +L+ + +ED+V+GL +GADDY++KPF+ EL+AR+RAI+RR R Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ DL ++L + T I LT +E+ ++ELL L ++K ++D Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I+ V+I LR+K+ + G I+T G GY +R+++ Sbjct: 181 QSYDAGTNIVQVYIKYLREKI-DQEGEPPLIQTARGIGYAIRDSS 224 >gi|116512538|ref|YP_811445.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108192|gb|ABJ73332.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] gi|300070367|gb|ADJ59767.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 225 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L+ S+ LKS V D G +G+ + +D I+LDL L + GF Sbjct: 5 IKILLVEDDLSLSKSVYDFLKSFAQVKQVYD-GVEGLYEAELGIYDLILLDLMLPEKNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVL+ LR + TPV I++ S++DK+ G GADDY++KPF +EL ARI+A+++R+ Sbjct: 64 EVLKELREQNVDTPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRTG 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + G++ +NL K+ V + L GKE+ ++ L +N L KE + ++ Sbjct: 124 KLEDSNGLSYGNIRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + V +++V++ K+RKKL + N + T+ GY+LR Sbjct: 184 GYDSDTTVTVVEVYMSKIRKKLKDTEFVNN-LSTLRNVGYILR 225 >gi|226227419|ref|YP_002761525.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226090610|dbj|BAH39055.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 222 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD + + L+ + + + + G +G + +D +ILD+ L G Sbjct: 1 MKILVIEDDPTVGEFVRRGLEEQRWQTDLCNNGLEGERMALSQPYDLVILDMRLPGRNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV +L+ +++ KV L++GADDY++KPF EEL+AR A++RR R Sbjct: 61 DVLRTLRSSGFERPVLVLTAQDAVDAKVETLRAGADDYVTKPFAFEELLARAEALLRRPR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + GDL ++ + V G I LT KE+ ++E L +++ + + + Sbjct: 121 ALASPQLRVGDLELDQGTREVLRAGELIELTPKEFAVLEYLMRHAGRVMSRTLITEYAWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P I+DV I LRKK+ +A K I TV G GY++R Sbjct: 181 YHFDPGTNIVDVVINHLRKKI-DARFDKKLITTVRGVGYMIR 221 >gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL R2-503] gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N1-017] gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL R2-503] gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N1-017] Length = 240 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G Sbjct: 6 VKILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 66 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + + Sbjct: 126 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 186 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 240 >gi|332187583|ref|ZP_08389319.1| response regulator [Sphingomonas sp. S17] gi|332012331|gb|EGI54400.1| response regulator [Sphingomonas sp. S17] Length = 229 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 126/223 (56%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD++ A I L+ E F + G DG+ +D IILD L + G Sbjct: 4 RILLIEDDRSTADYIANGLREEGFLIDHAANGRDGLFHATDGSYDCIILDRMLPGMDGMA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 L A+R A I++PV ILS +SS ED+V GL SG+DDY++KPF EL+AR+R ++RR Sbjct: 64 ALAAIRAAGIASPVLILSALSSPEDRVAGLTSGSDDYLTKPFVFAELLARVRLLIRRGSV 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+ +V DL ++L A V G I L +EY+++E L + +T+ M L + Sbjct: 124 TTNAPQTKLVCDDLEMDLLAHRVRRAGKPIDLQPREYRLLEYLLQHVDQVVTRTMLLEGV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D +P + DV I +LRKK+ + + TV G GY L Sbjct: 184 WDFHFDPNTNVTDVHISRLRKKIDEGF-ARPLLHTVRGSGYKL 225 >gi|224372302|ref|YP_002606674.1| response regulator receiver domain protein [Nautilia profundicola AmH] gi|223588456|gb|ACM92192.1| response regulator receiver domain protein [Nautilia profundicola AmH] Length = 221 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 122/198 (61%), Gaps = 2/198 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD+ +A +IE + + + + + GE+G+ + + +D +I+D L I G Sbjct: 1 MKILLIEDDEKIAKNIEKVFRQIGYRIDIAKDGEEGLYMAQNNNYDVLIVDWMLPKISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ L+ K +TP IL+ S IEDKV GL ADDY++KPF EEL+AR++A+ RRS Sbjct: 61 DLLKKLKKEK-NTPALILTAKSDIEDKVEGLNV-ADDYLTKPFEFEELIARVKALYRRSN 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I DL +N + K V G I LT K++++++ L + KN + +M ++L++ Sbjct: 119 NLNDNIIRVADLELNPETKEVRRAGKLIELTAKQFELLKYLMINKNKIVNTDMIQSNLWE 178 Query: 181 GRDEPEVKIIDVFICKLR 198 DE +I+V+I LR Sbjct: 179 MDDEINSNVINVYISHLR 196 >gi|167590482|ref|ZP_02382870.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 277 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 125/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 43 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 102 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R + TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 103 ICRRARGMQRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 162 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G LSV+ A+ V G RI LT +E+ ++ + ++ Sbjct: 163 LARDSRVDAGTLDVAG-LSVDPIAREASVDGVRIDLTPREFDLLYFFARHPGKVFSRMDL 221 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 222 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 268 >gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 244 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V G D ++ Y D I+LD+ + + G Sbjct: 10 RILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAAYAPDLIVLDIQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R LR + TPV +L+ ++ D+V GL +GADDY+ KPF +EL AR+RA++RRS Sbjct: 70 AARRLRASGSVTPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSY 129 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + GDL ++L + V G + LT E+ ++E+ LT+E Sbjct: 130 AAPAAGPEPAGDALAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFLAHPRQVLTREQ 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + AAG + TV G GYVLR Sbjct: 190 ILKTVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLR 237 >gi|229147640|ref|ZP_04275984.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228635849|gb|EEK92335.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] Length = 220 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +I+++++ A I L E + + +G+ + ++D IILD I G E+ R Sbjct: 1 MIKNERSSAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEICR 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 +R+ K +TP+ I++ S +D V GLQ+GADDYI KPF KEELVARI+AI+RRS + Q Sbjct: 61 QIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARIQAILRRSDCNQQ 119 Query: 125 ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 S DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 KEISFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 NIVVNPNVVDLYIGYVRKKLK-CEKKERYIQTIHGRGYSMIE 220 >gi|152992660|ref|YP_001358381.1| two-component response regulator [Sulfurovum sp. NBC37-1] gi|151424521|dbj|BAF72024.1| two-component response regulator [Sulfurovum sp. NBC37-1] Length = 220 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L++ED+KA+A ++ +L+ E + V D +E C +D I+LD L D G Sbjct: 1 MYLLIVEDEKAVADQLKELLEQEKYRCDVAYNYRDALEYCDERRYDLILLDWNLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR + +TPV +LS S ++D+V L +G DDY+ KP++ EL+ARIRA++RR Sbjct: 61 TLLNVLREEEDATPVLMLSANSKVDDRVAVLDAGGDDYLCKPYSNIELLARIRALLRRES 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-Y 179 +L+ +GDL+++ ++ V V I L+ E+ ++ELL KN LT+ ++L Sbjct: 121 PQKTTLLKSGDLTLDTSSRKVCVNKEPITLSPAEFDLLELLLHNKNIVLTRYQLNDYLCQ 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + ++DV I LRKK+ G N I TV G Y +++ Sbjct: 181 DYNSLKQSNLVDVHIKNLRKKI----GIDNCIVTVRGVRYKIQD 220 >gi|120402833|ref|YP_952662.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955651|gb|ABM12656.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 251 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 121/228 (53%), Gaps = 11/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ LA I L+ E F V G D I + + + D +ILDLGL I G E Sbjct: 16 RALVVDDEVPLAEVIAGYLEREQFETIVAANGLDAISVARELDPDVVILDLGLPGIDGLE 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + V +L+ + D V GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 76 VCRQIRTFSDAY-VVMLTARDTEIDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRV 134 Query: 121 ----GHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 G A VT G LS+++ A+ V + G I LT E+ ++E LS L++ Sbjct: 135 LHTAGAAAERNVTPPRQFGPLSIDVAAREVRIDGEPILLTRTEFDILEALSGHPGIVLSR 194 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + DG ++DV I LR+KL + A YI TV G GY Sbjct: 195 RQLIEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAAQPRYIRTVRGVGY 242 >gi|332991876|gb|AEF01931.1| Response regulator consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Alteromonas sp. SN2] Length = 227 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 126/220 (57%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD +A IE E + GE G+ + D I+LD+ L + GF Sbjct: 1 MNVLLVEDDPKVAAHIEKGFIGEGHSCVAARDGEKGLAEALSDDVDVIVLDVMLPLLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR + TPV +LS S +EDKVRGL+SGA+DY++KPF EEL+AR+ + R R Sbjct: 61 TILERLRKDNVLTPVLLLSAKSQVEDKVRGLRSGANDYLTKPFAFEELLARVEGLAGRER 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++LI GDL+++L + V+ I L KE+Q++E L + +T+ M L ++ Sbjct: 121 ESGDKTLIKVGDLTLDLVNRKVQRGDTEIDLQSKEFQLLECLLRHQGKVVTRSMLLEQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +P+ +IDV I +LR+K+ A IETV G GY Sbjct: 181 NYHFDPQTNVIDVHISRLRQKVDKAF-NVPLIETVRGTGY 219 >gi|209963556|ref|YP_002296471.1| cell cycle transcriptional regulator (CheY-like receiver domain) CtrA, putative [Rhodospirillum centenum SW] gi|209957022|gb|ACI97658.1| cell cycle transcriptional regulator (CheY-like receiver domain) CtrA, putative [Rhodospirillum centenum SW] Length = 256 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 12/236 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-----FYEFDAIILDLGLT 55 MRILLIE+++ +A ++ + ++D D I L + F ++DAI++ T Sbjct: 1 MRILLIENERLIAAALHREIGKAGLRCELSDEA-DAIRLMQEGDDSFADYDAILVG---T 56 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 G ++ LR T + L G + + L+SGADD + KP N E AR+ A+ Sbjct: 57 VSNGGGLVTQLRRCSGHTIIIGLLGHRCVTSTIAYLRSGADDVLVKPINALEFEARLHAV 116 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR+ GH+ S + G L+V LD + V G R+ L+ +E+ + +L+L ++KE Sbjct: 117 RRRTHGHSSSELRVGRLTVYLDGRDPAVDGQRLRLSHREHAIFSVLALNVGRVVSKEKIY 176 Query: 176 NHLYD--GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +Y G D P K+IDV+ICKLRKKL+ A GG YIETV+GRGY +++E Sbjct: 177 ETVYGLTGSD-PLDKVIDVYICKLRKKLAEATGGDRYIETVYGRGYKFEAPSEEEA 231 >gi|331702134|ref|YP_004399093.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129477|gb|AEB74030.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 231 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 128/232 (55%), Gaps = 12/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTDI 57 ILL+ED++AL+ + LK E++ V L +DG+E + Y+ D IILD L + Sbjct: 5 ILLVEDEEALSSYLIPELKFEDYQVL---LAKDGLEALQVYDNNRGNLDLIILDWMLPKL 61 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR +R PV +++ + DKV GL SGADDYI+KPF EEL+ARIR ++R Sbjct: 62 DGLEVLRRIR-KNDDIPVIMMTARDYVGDKVAGLDSGADDYITKPFEIEELLARIRVVLR 120 Query: 118 RSRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H Q L DL++N ++ V I LT +EY+++ L TLT++ L Sbjct: 121 HESHHHQQSELYTVEDLTLNTKSRQVSRGNQLIQLTQREYELLLTLIRHGGETLTRDELL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++ E + ++DV+I LR K+ K I TV G GYV+ N ++ Sbjct: 181 DAVWGVDFEGQPNVVDVYIRYLRNKVDRGY-SKQLIHTVRGVGYVMSGNYQE 231 >gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 233 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD IILD+ + ++ G E Sbjct: 9 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 69 ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S H +S++ GDL+VN D V V+G LT KE+ ++ELL+ K L+ Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 231 >gi|83749689|ref|ZP_00946669.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|207724268|ref|YP_002254665.1| two component response regulator protein [Ralstonia solanacearum MolK2] gi|207739009|ref|YP_002257402.1| two component response regulator protein [Ralstonia solanacearum IPO1609] gi|300697089|ref|YP_003747750.1| DNA-binding response regulator in two-component regulatory system with BasS (basR) [Ralstonia solanacearum CFBP2957] gi|83723651|gb|EAP70849.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|206589484|emb|CAQ36445.1| two component response regulator protein [Ralstonia solanacearum MolK2] gi|206592380|emb|CAQ59286.1| two component response regulator protein [Ralstonia solanacearum IPO1609] gi|299073813|emb|CBJ53334.1| Putative DNA-binding response regulator in two-component regulatory system with BasS (basR) [Ralstonia solanacearum CFBP2957] Length = 221 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD L ++ L+ +N D + FDAI+LDLGL D G Sbjct: 4 ILLIEDDLPLGTALARALRQAGYNTTWVRRLMDAQKWMTSNTFDAIVLDLGLPDGEGHVF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR A+ PV I S ++ ++++GL GADD++ KPF +ELVAR+RA++RR G Sbjct: 64 LEELRAAQSDVPVIIASARDALSERLKGLDEGADDFLVKPFPVDELVARLRAVLRRHAGQ 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G L V K V G+ + LT +EYQ++ L R + +T+E ++ LY Sbjct: 124 STNRWSVGSLVVEPSQKRVTQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREG 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++V I LR KL G+ I+T+ G GY++ N Sbjct: 184 NRVSANALEVVIHHLRGKL-----GEGVIQTIRGVGYMIGGN 220 >gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 241 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 129/236 (54%), Gaps = 6/236 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A + + L+ E + V G G+ + +DA++LDL L + G E Sbjct: 6 RVLIVEDDTHIAELLRMHLQDEGYAVQHAADGNAGLRELERGSWDALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR+RA++RR+ Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRRTDA 125 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ L+ G+L V+ A+ V+V+G + LT +E+ ++ + ++ L Sbjct: 126 LARNARMESGLLELGNLRVDPVAREVQVEGKSVELTPREFDLLYFFARHPGKVFSRLNLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 N ++ + + ++ I +LR K+ I TVWGRGY L +A +E+ E Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRMKVEADPTEPRRILTVWGRGYKLAISAMEESGE 241 >gi|264678635|ref|YP_003278542.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni CNB-2] gi|299529727|ref|ZP_07043163.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni S44] gi|262209148|gb|ACY33246.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni CNB-2] gi|298722283|gb|EFI63204.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni S44] Length = 227 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L + + G DG+ L E+ +ILD+ L + G+ Sbjct: 1 MRILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I+R R Sbjct: 61 QVLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILR--R 118 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 GH + + DL ++L + V G R+ LT KE+ ++ELL R L + + + Sbjct: 119 GHPANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +I+V + +LR K+ K I+TV G GYVL Sbjct: 179 VWDMNFDSDTNVIEVAMRRLRAKIDEGHSIK-LIQTVRGMGYVL 221 >gi|170738040|ref|YP_001779300.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820228|gb|ACA94810.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 224 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL IEDD +A I L++ + V G DG+ +D + LD L D+ G + Sbjct: 4 ILTIEDDPLIADHIAHTLRAAGHQIDVARTGRDGMARAMSANYDVVTLDRMLPDLDGLTI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSRG 121 L +R + TPV ++S MS ++ ++ GL++G DDY+ KPF+ EE+ ARI ++ RR RG Sbjct: 64 LATMRGVGLDTPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRRRPRG 123 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++++ G+L+++L + + + L E +++E + LT+ M ++ Sbjct: 124 ARVETVLRAGELALDLVRRRATLGARELTLLPTESRVLEFMMRNAGRVLTRTMIFEAVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R +P +IDV I +LRKK+ N G I T+ G GY+L Sbjct: 184 CRFDPGTNLIDVHIGRLRKKV-NRPGAAPLIRTIRGSGYML 223 >gi|239982791|ref|ZP_04705315.1| turgor pressure regulator [Streptomyces albus J1074] gi|291454638|ref|ZP_06594028.1| response regulator [Streptomyces albus J1074] gi|291357587|gb|EFE84489.1| response regulator [Streptomyces albus J1074] Length = 231 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++EL L++ + V G + L D I+LDLGL D+ G + Sbjct: 3 RVLVVDDEPQIVRALELNLRARQYEVDSAGDGTTALRLAAERHPDVIVLDLGLPDMDGVD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV +LS S ++KV+ L +GADDY++KPF +EL+AR+RA VRR+ Sbjct: 63 VLRGLR-SWSRVPVLVLSARQSSDEKVQALDAGADDYVTKPFGMDELLARLRAAVRRTEP 121 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A ++ D +V+L AK V QG + LT E+ ++E+L ++++ L Sbjct: 122 AAPDEEAEVVDAADFTVDLAAKRVHRQGRDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQE 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + V++ +LR+KL + T G GY Sbjct: 182 VWGPSYGTESNYLRVYMAQLRRKLETDPAHPRHFITEPGMGY 223 >gi|229169264|ref|ZP_04296976.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH621] gi|228614205|gb|EEK71318.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH621] Length = 230 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETTEKRIQIGDLTIDPINFTVEKNGKHLKLTLKEFEILKLFLKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|184154583|ref|YP_001842923.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|183225927|dbj|BAG26443.1| two-component response regulator [Lactobacillus fermentum IFO 3956] Length = 229 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 128/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ ++E + G+D I +L + +ILDL + ++ G Sbjct: 1 MKILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V+R +R S P+ +LS ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MDVIRQVR-KDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L +N D+ V+ ++G I LT E+ ++ LL+ N + + Sbjct: 120 ENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG+ IETVWG GY Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGY 224 >gi|77164853|ref|YP_343378.1| two comoponent transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254433825|ref|ZP_05047333.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] gi|76883167|gb|ABA57848.1| two compnent transcriptional regulator, winged helix family [Nitrosococcus oceani ATCC 19707] gi|207090158|gb|EDZ67429.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] Length = 219 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 123/220 (55%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ ALA + + K + V G D + +D ++LDLGL + G Sbjct: 1 MRLLLVEDNVALADELLPLFKGYGYAVDWRVDGRDALLAVHDESYDMVVLDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R ++ PV IL+ + +++ GL++GADDY+SKPF+ +EL+ R++A++RRS Sbjct: 61 QVLQHWRAEGVTLPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSH 120 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S + G L+++ D ++V LT E++++ L L++ HLY Sbjct: 121 GTVNSPRLEAGGLALDEDRQSVWQGDQEYELTRGEFRLLRCFMLHPGKVLSRMELSEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG E + +++V I +LR+KL G IET +GY Sbjct: 181 DGESERDSNVLEVHISRLRRKL-----GDPVIETRRNQGY 215 >gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 234 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + VY GE+ +E E D I+LDL L + G E Sbjct: 3 KILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVR-KNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 121 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A+ + GDL+++ DA V G I LT +E++++ L+ +T+E Sbjct: 122 SAKEAEEAPNAELTIGDLTIHPDAYMVTKNGEAIELTHREFELMHYLAKHLGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ ++ NY+ T G GY LR Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYLR 229 >gi|192293660|ref|YP_001994265.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|192287409|gb|ACF03790.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 221 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD +A + L + + GE+ ++ AIILDLGL + G Sbjct: 1 MRVLVVEDDSRIASELARGLGEAGYLAEIVGDGEEAWFRGDTEDYAAIILDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R TPV IL+ S ++V G+ +GADDY+ KPF EEL+AR+R+IVRRS Sbjct: 61 TILKRWRDNGRLTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S++ G++ ++ V V G + L+ EY++ L L + +++ ++Y Sbjct: 121 GHASSVVTIGEVMLDERQMQVSVGGKPVSLSPLEYRLASYLVLHRGRVVSQYELAENIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + I+V + ++R+K+ G + IET G GY++ Sbjct: 181 QDDAHDSNAIEVLVGRVRRKI-----GADLIETRRGFGYIV 216 >gi|153009992|ref|YP_001371207.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561880|gb|ABS15378.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 255 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A +E + + GE G L + +D +++D L G Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR + TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ + RRS Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ GDL ++ A T Q I L +E++++E L +T+ M L +++ Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D +P+ +IDV I +LR K+ G + TV G GY+L+ ++ Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGP-LLHTVRGAGYMLKAGRAKQSA 250 >gi|107103873|ref|ZP_01367791.1| hypothetical protein PaerPA_01004944 [Pseudomonas aeruginosa PACS2] gi|254238491|ref|ZP_04931814.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa C3719] gi|254244323|ref|ZP_04937645.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa 2192] gi|313109760|ref|ZP_07795699.1| two-component response regulator [Pseudomonas aeruginosa 39016] gi|126170422|gb|EAZ55933.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa C3719] gi|126197701|gb|EAZ61764.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa 2192] gi|310882201|gb|EFQ40795.1| two-component response regulator [Pseudomonas aeruginosa 39016] Length = 221 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL EDD L I L+ E V +VTD G EFD ++LD+GL G Sbjct: 1 MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTD-GVAAENALVTDEFDLLVLDIGLPRRSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++LR LR TPV +L+ + D+V GL SGADDY++KPF+ +EL AR+RA+ RR+ Sbjct: 60 LDILRNLRHQGRLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRT 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +V G+L ++ V + G + L +EY ++ LL L++ LY Sbjct: 120 TGRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E I+V + LR+KL N I TV G GY + + A Sbjct: 180 GWSGDVESNAIEVHVHHLRRKLGN-----QLIRTVRGIGYGIDQPAP 221 >gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814] gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814] Length = 233 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 127/227 (55%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A + L L E F+ + GE + Y+ + I+LDL L I G++ Sbjct: 5 KILIVDDDENIAELVSLYLTKECFDTMMVHDGERALVAFDTYKPNLILLDLMLPGIDGYQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + +TP+ +LS + DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 65 VCREIR-TRSNTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAVLRRYQV 123 Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ D + +NL +V V GH + + KE +++ L+ N T+E Sbjct: 124 GSKPETPQADKGKCVEYPGIEINLTNYSVIVDGHTVEMPPKELELLYFLASSPNQVFTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR+K+ + G + TVWG GY Sbjct: 184 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHNGWS--LSTVWGIGY 228 >gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 239 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 132/235 (56%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L E + V GE+ +++ + D I+D+ L I GFE Sbjct: 5 KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++R +R + +TPV LS DKV GL+ GADDYI+KPF+ EL+AR++A+ RR Sbjct: 65 LVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFRRL 124 Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 QS I+ DL ++++ V+V+G +++LT E++++ L+ + ++++ Sbjct: 125 SAATQSKEERPKKIIARDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K++ Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239 >gi|241895394|ref|ZP_04782690.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241871368|gb|EER75119.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 233 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 129/230 (56%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 +ILL+ED++ LA S++ L+ E+ V G++ ++L +E + IILD L + G Sbjct: 4 KILLVEDEEGLADSLKTELELEDMVVIWAKDGQEALDLFHEHEQELNLIILDWMLPKLDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F VLR +R PV +L+ I DKV GL GADDY++KPF EEL+ARI +R S Sbjct: 64 FSVLRRIR-KHSQMPVIMLTARDYIGDKVAGLTGGADDYMTKPFEVEELLARIEVSLRHS 122 Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + H + GDL+V+ K V I LT +EY+++ +L + ++ +++ L+ Sbjct: 123 QKTDHQAKIYTVGDLTVDTTTKRVSRHNKIIPLTQREYELLVVLVMNEDEACSRDGLLDE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ E + I+DV++ LR K+ + I TV G GY+L +N +D Sbjct: 183 VWGVDFEGQPNILDVYVRNLRSKIDADPSNQKLIHTVRGVGYMLSQNVQD 232 >gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2] gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family [Thermotoga sp. RQ2] Length = 239 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 132/235 (56%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L E + V GE+ +++ + D I+D+ L I GFE Sbjct: 5 KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++R +R + +TPV LS DKV GL+ GADDYI+KPF+ EL+AR++AI RR Sbjct: 65 LVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 124 Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 QS I+ DL ++++ V+V+G +++LT E++++ L+ + ++++ Sbjct: 125 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K++ Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239 >gi|317402481|gb|EFV83049.1| two component response regulator [Achromobacter xylosoxidans C54] Length = 243 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL+ED++ +A + L F V D D F E+DAI++DL L D Sbjct: 16 MRILLVEDERDMASWLMRALAQSGF---VPDHAADARTAEAFMAGTEYDAIVMDLRLPDK 72 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VLR +R TPV +L+ +++D+VRGL GADD+++KPF EEL AR+ A+VR Sbjct: 73 HGLVVLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVR 132 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG + G LS + +++ + G + LT +E+ + L R + K Sbjct: 133 RSRGRQHPRLQCGSLSYDSESRAFTLDGSLLFLTPREHAALAALLTRSGYPVDKSQLFGK 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ E I+V + +LRKKL AG I TV G GY+L A + Sbjct: 193 VFTHDSEANPDAIEVVLHRLRKKL---AGSDVRIVTVRGLGYMLESVASE 239 >gi|257125818|ref|YP_003163932.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257049757|gb|ACV38941.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 226 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED++ L I L E + V G D + E+D I+ D+ L + GF Sbjct: 1 MRILVIEDEENLNDIIVKKLTMEKYGVDSCLNGTDALNYIFSTEYDVIVSDIMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+L+ +R I TPV +L+ IED+V+GL GADDY+ KPF +EL+ARIR ++RR Sbjct: 61 EILKKIRENGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRRNP 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S +A ++ +L+VN ++ V I L+ +E+ ++E + K L++E H Sbjct: 121 TSNSNASNVFKIANLTVNCNSHDVFRDETFIKLSTREFTILEYMIRNKERVLSREQIEQH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ E +IDV+I LR+K+ K I T+ G GYVL+ Sbjct: 181 IWNYDYEGGTNVIDVYIRYLRRKIDKGFEPK-LIHTIRGIGYVLK 224 >gi|77359341|ref|YP_338916.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874252|emb|CAI85473.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas haloplanktis TAC125] Length = 229 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 130/228 (57%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+I+DD L + L ++ FNV GE G++L + ++ I+LD+ L + GF Sbjct: 1 MKLLMIDDDTGLCELLSEYLTAQGFNVQSVHDGEQGLKLAQANDYALILLDVMLPTLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVL+ LR K+ TPV +L+ D++ GL+ GADDYI KPFN EL+AR++AI RR Sbjct: 61 EVLKQLRQTKL-TPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIE 119 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + L+V G +++NL A+ ++ + LTG EY+++ LL+ R ++KE Sbjct: 120 HITTMNTTSSNKLVVNG-VTINLAAREALIKQTTLTLTGTEYEILALLAKRAGEVVSKEQ 178 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R + ID+ + +RKK++ + I+T+ G GYV Sbjct: 179 ISEDVLGRRLASFDRSIDMHVSNIRKKIAEHLPNE-LIKTIRGTGYVF 225 >gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ L+ E + V V GE+ + L +++ IILDL + + G Sbjct: 4 IRVLIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKYNLIILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRRLR-NKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H LI +S++L TV G + LT KE+Q+++ + TK Sbjct: 123 VLGSDRSSHENKLIKFKGISIDLKKCTVITAGEEVSLTAKEFQLLKFFATHPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++DG + + V I KLRKK+ +I TVWG GY Sbjct: 183 LFRNVWDGNYPEDDNTVMVHIRKLRKKIEADPSNPQFILTVWGLGY 228 >gi|257785036|ref|YP_003180253.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257473543|gb|ACV51662.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 224 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL ED+K +A +I +LK E ++V ++TD G + + +D ILD+ + + G Sbjct: 1 MRVLLAEDEKRMAAAIVALLKQEKYDVDHMTD-GASALLALESNMYDIAILDVMMPKMSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FEV R R I+ P+ +L+ S ++DKV GL +GADDY++KPF EL+AR+RA+ RRS Sbjct: 60 FEVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFQTAELLARLRALGRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTV--EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++++ GDLS++ T+ E G + L+ KE +++E + +T++ Sbjct: 120 SSFQENVLCFGDLSLDSTTATLTCETSGQSVRLSEKELRILEYMIGNHGRIMTRDQLAIK 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++V++ RKKL+ G I+ V G GY LR+ Sbjct: 180 IWGFESDAEYNNVEVYMSFTRKKLA-FIGSTVEIKAVRGLGYELRD 224 >gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 244 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + + L+ F V G +E + D I+LD+ L D GF Sbjct: 18 RLLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLIVLDVMLPDFDGFA 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR TPV L+ ++ D++ GL G DDY++KPF+ EE++ARI AI+RR+RG Sbjct: 78 VVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRRARG 137 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A +V D+ ++ D+ V G I L+ E++++ L+K L+H+ Sbjct: 138 GAAEPSPRMVFADIELDEDSHEVWRAGKPISLSPTEFKLLRYFMANAGRVLSKAQILDHV 197 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + I++ ++ LR+K+ N I T+ G GYVLR+ Sbjct: 198 WNYDFRGDAGIVESYVSALRRKVDNTE--PRLIHTLRGVGYVLRQ 240 >gi|300774982|ref|ZP_07084845.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300506797|gb|EFK37932.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 224 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDD+ +++ + L +N+ + D GE EL Y+FD I++D+ L + G Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R TP+ +LS ++S +DK++ L GADDY+SKPF+ EEL++RI+A+ RR++ Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G+++++ D V I + EY++ L KN L++ L++ Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++DV+I +R K+ + I TV G GY++++ Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDETE--QKIIHTVKGTGYLIKD 224 >gi|8885859|gb|AAF80268.1|AF155506_2 ArmR [Pseudomonas sp. JR1] Length = 227 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+ EDD+ +A I L ++ V + K EFD ++LDLGL D G Sbjct: 1 MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASSARAMLKVAEFDVMVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR + + PV IL+ S+ D+V GLQ+GADDY+ KPF+ EL AR+ ++RR Sbjct: 61 KLLQQLRHSGLEIPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +LI G L+ + ++ + G + L+ +E +++ L + L+ E + +Y Sbjct: 121 GRSVNLIEHGRLTYDPSSRETMLGGQPVDLSRREQSLLQALLHNRGRVLSTEQLKDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL N +ETV G GY L Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216 >gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 224 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+++DD+ALA I ++L+++ F V+ D G+ +E+ + + D ++LDL L + G Sbjct: 4 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQ-ALEVFRSSKPDLVLLDLMLPGMDGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R A+ +P+ +L+ S D VRGL+SGADDY+ KPF ELVAR+RA +R Sbjct: 63 EVCRQIR-AESDSPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGD 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + D+++++ V RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 122 QKAPETLRIADITIDVAGHLVSRNDERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 182 YRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGY 220 >gi|315441548|ref|YP_004074425.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. Spyr1] gi|315265203|gb|ADU01944.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. Spyr1] Length = 251 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 11/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ ALA + L E+F + D G D + + + ++ D +ILDLGL + G E Sbjct: 19 RALVVDDEAALAEVVASYLNREHFTTRIVDNGPDAVAVARDFDPDVVILDLGLPGMDGLE 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR + V +L+ + D + GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 79 VCRQLRTFSDAY-VVMLTARDTEMDTIVGLTVGADDYVAKPFSPRELVARIRAMLRRPRA 137 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 G + + G L +++ + V + G I LT E+ ++ LS R L++ Sbjct: 138 TPEPESDRGGDLPAPLSFGPLRIDVAGREVSLDGEPILLTRTEFDILAALSARPGVVLSR 197 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L + +G ++DV I +R+KL + Y+ TV G GY Sbjct: 198 RQLLETVREGPWVGNEHLVDVHIGHVRRKLGDDPAAPRYVITVRGVGY 245 >gi|300773343|ref|ZP_07083212.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300759514|gb|EFK56341.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 224 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ LA SI L + + + E +++D I+LD+ L D G Sbjct: 1 MKILIIEDEYELAKSIADYLGQQGYRCEFASTFQMAQEKIAGFDYDCILLDIMLPDGNGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ L+ + V I+S +++DK++GLQ GADDY++KPF+ ELVARI A++RR + Sbjct: 61 HVLQTLKEQEKQDGVIIISAKDALDDKIKGLQIGADDYLTKPFHLSELVARIYAVIRRKQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178 ++IV +L ++L AKTV V H + T KE ++ KN ++K HL Sbjct: 121 FQNSNIIVQNELQIDLLAKTVSVGDHAVPFTKKELDLLLYFIGNKNKVISKSTLAEHLSG 180 Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D D + I I L+KKL +A G +Y++T++G GY Sbjct: 181 DVADMLDNHD--FIYAHIKNLKKKLQDAHSG-SYLKTIYGSGY 220 >gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + ++L + EFD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 64 ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S H +S++ GDL+VN D V V+G LT KE+ ++ELL+ K L+ Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226 >gi|197117560|ref|YP_002137987.1| winged-helix transcriptional response regulator KdpE [Geobacter bemidjiensis Bem] gi|197086920|gb|ACH38191.1| winged-helix transcriptional response regulator KdpE [Geobacter bemidjiensis Bem] Length = 235 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 123/223 (55%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+D+ A+ + L S+ F ++ D G G+ D I+LDLGL D+ G E Sbjct: 11 RILVIDDEAAIRRFLHSALSSDEFILHEADSGHGGLSAAAALRPDLILLDLGLPDLEGIE 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R P+ +LS +DKV L +GADDY++KPF EL+AR+RA +RRS Sbjct: 71 VIRRIREWS-QVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSAV 129 Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + +GDL+V+L+ + V V+G + LT EY ++ LL + +T L ++ Sbjct: 130 QLSEPVFSSGDLTVDLNLRRVTVEGAEVQLTPTEYDLLRLLITHADKVITHSQILKQIWG 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++ V I LRKK+ +I T G GY ++ Sbjct: 190 VAYQDQPQVLRVTISNLRKKVERDPSRPRHITTEPGVGYRFKQ 232 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300076465|gb|ADJ65864.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + ++ L+ + F + G+ + ++ ++LDLGL G Sbjct: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + PV I + ++ D+V GL +GADDY+ KPF+ EEL AR+RA+ RR Sbjct: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+SL+ ++ +N V V G ++L+ +E+ +++ R L++ LY Sbjct: 121 GRAESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E ++V I LRKK+ G ++I+ V G GY++ Sbjct: 181 WDDSIESNAVEVHIHALRKKV-----GSDFIKNVRGVGYLV 216 >gi|331085187|ref|ZP_08334273.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407970|gb|EGG87460.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 233 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 124/233 (53%), Gaps = 13/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +ILLIEDDK ++ ++ L EN+ V DG E C +++ F I+LDL + I Sbjct: 5 KILLIEDDKEISEMLKNYLTVENYEVIC---AYDGQEACDYFDRTDFSMILLDLMIPKIN 61 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V++ +R + P+ I+S S DK GL GADDYI+KPF+ E++ARI+A +RR Sbjct: 62 GMDVMQHIREHSV-VPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRR 120 Query: 119 SRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + Q + G+L +NL T+ G R+ LT KEY++++LL TKE Sbjct: 121 RNQYDQGSEDVPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + ++V I +LR K+ YI TVWG GY L EN Sbjct: 181 QIYALVWKDAYLGDENAVNVHISRLRNKIEEDTRNPRYIITVWGIGYKLGENV 233 >gi|227327067|ref|ZP_03831091.1| DNA-binding transcriptional regulator PhoP [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|301069182|dbj|BAJ11970.1| response regulator PehR [Pectobacterium carotovorum subsp. carotovorum] Length = 229 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 120/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL++ED+ L H + + + V D D E F D I+DLGL D Sbjct: 1 MRILVVEDNVLLRHHLTVQMNEMGHQV---DAASDAKEADYFLHENMPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++ P+ +L+ +DKV L++GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGMSMIRRWRAHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + + G I LT EY +IE L K ++KE + Sbjct: 118 RNSGLASQVISLPPFEIDLSRRELVIHGGPIKLTAFEYTIIETLIRNKGKVVSKESLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQAE-APDVITTVRGQGY 218 >gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus carnosus subsp. carnosus TM300] gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA [Staphylococcus carnosus subsp. carnosus TM300] Length = 240 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 136/239 (56%), Gaps = 10/239 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++L L+ E+F++ G++ +++ ++ I+LDL L ++ G E Sbjct: 3 KILVVDDEERIRRLLKLYLERESFDIEEAQDGKEALDMALNTDYACILLDLMLPELDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR+ Sbjct: 63 VANRLREYK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTLT 121 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 HA+ LI L ++ DA V G +++LT KEY+++ L+ N +E Sbjct: 122 ATSEQNEPHARDLIEFKHLVIDNDAHRVLADGTQVNLTPKEYELLIFLAKTPNKVFDREQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETCE 231 L ++ +++ +D + +LR+KL+ ++ + I+TVWG GY N DET + Sbjct: 182 LLKDVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAHMIQTVWGVGYKFEVNNNDETTQ 240 >gi|149204702|ref|ZP_01881666.1| two-component system, regulatory protein [Roseovarius sp. TM1035] gi|149141811|gb|EDM29863.1| two-component system, regulatory protein [Roseovarius sp. TM1035] Length = 222 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ LA I L + V GE G L A +LDLGL I G Sbjct: 1 MKVLVVEDDRDLAAQIAAALTQAGYTVESAHDGETGEFLGATETVGAAVLDLGLPGIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ R A ++ PV IL+ + DKV G ++GADDY+ KPF EE+ R+ ++RR+ Sbjct: 61 EVLKRWRGAGLTFPVLILTARDAWSDKVAGFRAGADDYVLKPFRMEEVTLRLSTLIRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G L ++ + G + LT E +++ L L K +++ H+YD Sbjct: 121 GHATAELAAGALMLDTATGLATLDGMPLRLTAFEGKLLRYLMLHKGRVVSRTELSEHMYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + ++V I +LR+K+ G+ +ET G GY L Sbjct: 181 RDADRDFRSMEVVIGRLRRKI-----GEARVETRRGEGYRL 216 >gi|294678530|ref|YP_003579145.1| winged helix family two component transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477350|gb|ADE86738.1| two component transcriptional regulator, winged helix family [Rhodobacter capsulatus SB 1003] Length = 219 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L ++ + ++ +V + + +D I+LDL L D G Sbjct: 1 MRILIVEDDAILGAAVRDQVAADGHSVDWAMRLDQAADALAVAAYDLILLDLMLPDGRGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ LR ++TPV IL+ + + D++ GL +GADDY+ KPF+ EL ARI ++ RR Sbjct: 61 PFLKTLRTQGVATPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELTARIGSVARRYA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ +I G+L+++L A+ + G + LT +E+ + ELL R K + LY Sbjct: 121 GNPNPVIRLGELTIDLAARELRRAGKAVALTAREWALFELLLSRPGQIFPKRDLEDRLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE ++V + +LRKKL G IET G GY L Sbjct: 181 FDDEIGSNTLEVHVSRLRKKL-----GAQVIETERGLGYRL 216 >gi|260430574|ref|ZP_05784547.1| transcriptional activator protein CopR [Citreicella sp. SE45] gi|260418603|gb|EEX11860.1| transcriptional activator protein CopR [Citreicella sp. SE45] Length = 225 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ILL EDD +A I L +V +V+D G D + C + + D ILD L + G Sbjct: 1 MKILLAEDDAKIADYIVAGLSENGHSVEHVSD-GRDALSYCLYNDCDLAILDRMLPGMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 VL+ALR ++ + PV L+ + ++D+V GL +G DDY++KPF+ ELVARI AIVRR Sbjct: 60 LSVLKALRASQKTLPVLFLTALGQVDDRVEGLAAGGDDYLTKPFHFSELVARIDAIVRRK 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + ++ DL+++L ++T QG+ I L KE+ ++E+L +T+ + L + Sbjct: 120 SEKKVEPVLTVHDLTLDLLSRTATRQGNVIELHAKEFSILEILMRNAGRVVTRTLLLERV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ EP +++ + +LR K+ I T+ GY + Sbjct: 180 WNFNFEPNTTVVETHMSRLRAKVDRPFDTP-LIHTIRNTGYSM 221 >gi|241763559|ref|ZP_04761611.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241367290|gb|EER61630.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 227 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F + G DG+ L E+D +ILD+ L + G+ Sbjct: 1 MKILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I+RR R Sbjct: 61 QVLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ + DL ++L + V G RI LT KE+ ++ELL R L + + + ++ Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V + +LR K+ K I+TV G GYVL Sbjct: 181 DMNFDSDTNVIEVAMRRLRLKIDEGQDVK-LIQTVRGMGYVL 221 >gi|33599368|ref|NP_886928.1| transcriptional regulatory protein [Bordetella bronchiseptica RB50] gi|33566964|emb|CAE30877.1| transcriptional regulatory protein [Bordetella bronchiseptica RB50] Length = 237 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL-TDIPGFEV 62 LLIEDD+A A + L V V+ G G+E ++D IILD L ++ G + Sbjct: 5 LLIEDDQANARYLANGLTELGHMVTVSGDGAGGLENAMKDQWDIIILDRMLPNNVDGLSI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR TPV +LS +S+++D+V GL++G DDY+ KPF+ ELVAR+ A+VRR+R Sbjct: 65 LSTLRALGKKTPVLVLSALSAVDDRVDGLRAGGDDYLVKPFSFSELVARLDALVRRTRPD 124 Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + DLSVN+ + V+ G I L +E++++ L L + +T+ M L ++ Sbjct: 125 PDVKELRIADLSVNVATQKVQRAGVPISLQPQEFRLLVYLMLHAHRIVTRTMLLETIWGY 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P+ +IDV + +LR+K+ + A I TV G GY L + Sbjct: 185 SFDPQSNVIDVQVSRLRRKI-DTASATPLIHTVRGAGYTLSD 225 >gi|320108041|ref|YP_004183631.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319926562|gb|ADV83637.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 224 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ + ++ L ++V D +E + FDA+I+DLGL D+ G Sbjct: 1 MRLLLVEDELEIQGFVKQSLIDAGWDVQTADDATSALEEVTKHVFDALIIDLGLPDLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119 +++ LR + I PV ILS S++++V+GL+ G DDY++KPF ELVARIR +VR S Sbjct: 61 DLILRLRRSGIKAPVLILSARRSVDERVKGLELGGDDYLTKPFAAAELVARIRNLVRLAS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S I DL ++ + G ++LT +E+ ++E L +T+ M L ++ Sbjct: 121 QKENISHIRIHDLEIDAVKRRATRNGQLLNLTPQEFLLLEYLCRNAGRVVTRSMLLAEVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ ++DV + +LR K+ + G ++ I+T+ G GYV + Sbjct: 181 GMQFQPDTNMVDVHMYRLRGKI-DPEGSESRIKTLRGVGYVFQ 222 >gi|329896334|ref|ZP_08271457.1| two component transcriptional regulator, winged helix family [gamma proteobacterium IMCC3088] gi|328921858|gb|EGG29228.1| two component transcriptional regulator, winged helix family [gamma proteobacterium IMCC3088] Length = 228 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L + L +F + Y D I+LDLGL D G Sbjct: 1 MRVLVVEDEPRLREGLVKSLHQSSFACVEAGSATEAQYSVDNYPCDLILLDLGLPDGEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R R + P+ IL+ + +DKV GL++GADDY++KPF EE+VARI+ +RR Sbjct: 61 ALVRRWRDQGLDLPIIILTARADWQDKVSGLEAGADDYVTKPFRVEEVVARIKVALRRVG 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A + G +++N DA+ V V + LT E+ ++ LL+ +K HLY Sbjct: 121 GRATERSDFVGGVTINFDARRVWVGKQELSLTSFEFNLLALLAQSPGAVRSKADLAEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D ++ E +++V + +LRKK ++A IETV G GY Sbjct: 181 DADEDRESNVLEVLVGRLRKKFASAM-PDVVIETVRGSGY 219 >gi|149918888|ref|ZP_01907374.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] gi|149820262|gb|EDM79679.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] Length = 239 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 126/233 (54%), Gaps = 13/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILLIEDD+ LA L+S V + GE G+E E + ++LDL L I G Sbjct: 4 VRILLIEDDEKLAERTAEYLQSHKATVEIVPDGERGLERAASGEHELVLLDLMLPGIDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+ R LR + PV ILS D++ GL+ GADDY+ KPF+ EL+ARIRA++RR Sbjct: 64 ELCRKLR-QRSKVPVIILSARGDEVDRIVGLEVGADDYMPKPFSPRELLARIRAVLRRHS 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++G + + TG L ++ +T + G LT ++ ++ LL+ + L++ Sbjct: 123 AAQGDDEDSVTTGPLEIDRARRTATIAGASCELTAYQFDLLWLLATQAERVLSRNQLHAQ 182 Query: 178 LYDGRDEPEV-------KIIDVFICKLRKKLSNAAGGKN--YIETVWGRGYVL 221 + R EP + + IDV + K+R+ L A+ G+ I+TV G GYVL Sbjct: 183 VRALRGEPAMDFDPTVDRSIDVHLSKIRQALDAASPGRGAAMIKTVRGVGYVL 235 >gi|148273950|ref|YP_001223511.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831880|emb|CAN02850.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 257 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ +L +++ L+ E + + + G + + ++ DA++LD+ L D+ G Sbjct: 31 IRVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGL 90 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +VL LR PV L+ S++D++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 91 QVLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRST 150 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I GDL+++ D+ V G I LT E++++ L L+K L+ Sbjct: 151 LVVSDSVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILD 210 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+K+ AG I TV G GY+L+ Sbjct: 211 RVWSYDFGGKSSVVEIYISYLRRKID--AGRNPMIHTVRGSGYMLK 254 >gi|221133927|ref|ZP_03560232.1| response regulator [Glaciecola sp. HTCC2999] Length = 223 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+ED+ ALA+ I L+ + V G+ I + + D IILDLGL DI G Sbjct: 1 MHILLVEDEIALANEICQSLRQAQYAVSHLGHGKQAIIAAQNGDVDIIILDLGLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++ +R +++ P+ +L+ + DK+ GL +GADDY+ KPF EEL+AR+R + RR Sbjct: 61 DVIKKIRSLQLAIPILVLTARGQLSDKINGLDAGADDYLPKPFALEELLARLRVLQRRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S I +S+N+D+ V V I L KE+ ++ L R N ++K + LY+ Sbjct: 121 TVMSSTIEISQVSLNIDSMLVTVNDTMIQLRRKEFMVLRALMERANRIVSKAQLESMLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E I+V + LRKKL +++I + G GY + Sbjct: 181 WGHEVSSNAIEVHVHNLRKKLP-----EHFITNIRGVGYCI 216 >gi|15828139|ref|NP_302402.1| two-component response regulator [Mycobacterium leprae TN] gi|221230616|ref|YP_002504032.1| two-component response regulator [Mycobacterium leprae Br4923] gi|34098418|sp|Q50136|PRRA_MYCLE RecName: Full=Transcriptional regulatory protein prrA gi|2440114|emb|CAB16701.1| two-component regulator [Mycobacterium leprae] gi|13093693|emb|CAC31078.1| two-component response regulator [Mycobacterium leprae] gi|219933723|emb|CAR72220.1| two-component response regulator [Mycobacterium leprae Br4923] Length = 233 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G + + DAI+LD+ + + G V+ ALR P Sbjct: 22 SLERGLRLSGFEVSTAIDGAEALRNATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR A S I G Sbjct: 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETIAVGP 141 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 L V++ + V G + LT +E+ ++ +L+ K T L++ L ++ + ++D Sbjct: 142 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTTVLSRAQLLELVWGYDFAADTNVVD 201 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 VFI LR+KL A G + TV G G+VLR Sbjct: 202 VFIGYLRRKL-EANSGPRLLHTVRGVGFVLR 231 >gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 228 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DDK + + I + L++E + + ++L + EFD IILD+ + ++ G E Sbjct: 4 KILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 64 ACMKIRENR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S H +S++ GDL+VN D V V+G LT KE+ ++ELL K L+ Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLVRNKGIVLSVAKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226 >gi|254374844|ref|ZP_04990325.1| two component response regulator [Francisella novicida GA99-3548] gi|151572563|gb|EDN38217.1| two component response regulator [Francisella novicida GA99-3548] Length = 229 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 133/225 (59%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +DDK +A I+ + N V G++ + L +D I++D + + G Sbjct: 6 KVLVADDDKKIAQFIKTKFEENGINTTVAFDGKEALFLINTNNYDVIVIDWMMPYLDGIS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L+ LR I+TPV ILS + S E+K+ GL+SG+DDY++KPF+ +EL+ R+ + +R++ Sbjct: 66 LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125 Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 AQ+ ++ GD+ ++ A V I L +EY+++ LL KN ++K M L + Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D +P+ +++V I +LR KL+ G + I+T+ G GYV++E Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLT-EGGLSDPIKTIRGFGYVIQE 229 >gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator [Shewanella loihica PV-4] gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 238 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ + ++ L+ + + + G DG FD IILD+ L D+ G+ Sbjct: 14 MRILVIEDEIKIGDYLKKGLEEAGYTISLCRNGLDGYHCAISEHFDLIILDVMLPDMNGW 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +R+ PV L+ S+EDK+ GL+SGADDY+ KPF EL+AR++ ++RR Sbjct: 74 QILEKIRLNNSDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLLRRGT 133 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 QS +T L +++ + + ++HLT KE+ ++ELL + LT+ + ++ Sbjct: 134 KQLQSDTLTLHGLKLDITKRRASREQTKLHLTNKEFSLLELLVRHQGEVLTRSFIASQVW 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +IDV I +LR K+ + K I TV G GY L A Sbjct: 194 DMNFDSDTNVIDVAIRRLRAKVDDPFSVK-LIHTVRGMGYKLDTEA 238 >gi|309783437|ref|ZP_07678143.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp. 5_7_47FAA] gi|308917836|gb|EFP63527.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp. 5_7_47FAA] Length = 206 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/190 (36%), Positives = 114/190 (60%), Gaps = 2/190 (1%) Query: 33 GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92 G DG L ++D ++LD+ L D+ G++++++LR A+ + PV L+ S+ D+V+GL+ Sbjct: 11 GTDGRHLAMSGDYDLLLLDVMLPDVDGWQIVQSLRAAEQAVPVLFLTARDSVADRVKGLE 70 Query: 93 SGADDYISKPFNKEELVARIRAIVRRSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLT 151 GADDY+ KPF EL+AR+R ++RR G S I DL ++L + G +I LT Sbjct: 71 MGADDYLVKPFAFAELLARVRTLLRRGTGAVSSDRIQVADLVLDLARRRASRGGQKIPLT 130 Query: 152 GKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYI 211 KE+ ++ELL R+ L + + + ++D + + +IDV I +LR K+ + K I Sbjct: 131 SKEFSLLELLVRRRGEVLPRSLIASQVWDMNFDSDTNVIDVAIRRLRAKIDDHFEPK-LI 189 Query: 212 ETVWGRGYVL 221 +TV G GYVL Sbjct: 190 QTVRGMGYVL 199 >gi|167647848|ref|YP_001685511.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350278|gb|ABZ73013.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 223 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD A ++ L + GE G+ FD +I+D + G Sbjct: 1 MRILIIEDDLEAAAAMSHGLTEAGYQCVHAPDGEAGLTAAGKGGFDVMIVDRMMPKKNGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ LR +TPV LS + + D+V GL++GADDY+ KP+ EL+AR+ A+ RR Sbjct: 61 EVVETLRREGDNTPVLFLSALGEVGDRVVGLKAGADDYLVKPYAFPELIARVEALSRRRE 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + G+L +NL +TV QG I L +E+Q++E + ++T+ M L ++ Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P+ +IDV I +LR K+ + ++TV G GY L Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGF-DRAMLQTVRGAGYRL 221 >gi|257870434|ref|ZP_05650087.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804598|gb|EEV33420.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 228 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K LA +EL LK E +N V G G++ E+DAI+LDL L ++ G EV Sbjct: 4 ILIIEDEKNLARFVELELKHEGYNTEVHYNGRTGLDAALNNEWDAILLDLMLPELNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116 R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA I Sbjct: 64 CRRVRQTK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+ I DL++ + + V I LT +EY+++ L N L +++ LN Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRGSDVIELTKREYELLLTLMENVNVVLARDVLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + G ++YI+TV G GYV+R Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227 >gi|86147196|ref|ZP_01065512.1| transcriptional regulator [Vibrio sp. MED222] gi|218708119|ref|YP_002415740.1| DNA-binding response regulator PhoP [Vibrio splendidus LGP32] gi|85835080|gb|EAQ53222.1| transcriptional regulator [Vibrio sp. MED222] gi|218321138|emb|CAV17088.1| DNA-binding response regulator in two-component regulatory system with PhoQ, PhoP [Vibrio splendidus LGP32] Length = 226 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59 M ++L+ED++ L H + L + V+ ++ + K D +I+DLGL D G Sbjct: 1 MLVVLVEDNEILNHHLSSQLSEQGHTVHADRTASACLQTIQKQSNTDVMIIDLGLPDFDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ +R +I+ P+ IL+ + +DKV GL SGADDY++KPF EEL AR+ A+VRR+ Sbjct: 61 ITLIKQIRRKEIAVPILILTARGNWQDKVEGLNSGADDYLTKPFQFEELHARLEALVRRN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + S I L+++ AK + I LT E+Q+ E L ++K+ + LY Sbjct: 121 QGFSASQIKAQSLTLDTQAKRISYDDALIELTALEFQIFEYLIRHCLQIVSKQQIADSLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + ++ I+V + +LRKKL+ K I T+ G+GY AK Sbjct: 181 AQGENVQLNNIEVIVSRLRKKLTQYTQAK-LISTIRGQGYRFELEAK 226 >gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 135/222 (60%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + I++ L++ + + ++ + K ++ D I+LD+ + + G+E Sbjct: 3 KILIVDDDLNICEVIKMYLENSGYETSLAYCAQEAQDQVKGFKPDLILLDIIMPETDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +L+ +R + TPV +L+ S DKV GL+ GADDYI KPF+ +EL+AR++A++RR+ Sbjct: 63 ILKWIR-REHQTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVLRRTII 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I+ L +++D+ T+ + + + KE+++I L+ KN T+E L ++ Sbjct: 122 TDKVKEKIIFQGLVIDMDSYTIYYKDEEMRMPPKEFELIYFLASNKNKVFTREQLLCEVW 181 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 G D P + + +DV I +LR+KL + G+N+ IETVWG GY Sbjct: 182 -GYDYPGDSRTVDVHIKRLREKLQD---GENWQIETVWGVGY 219 >gi|171915823|ref|ZP_02931293.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 225 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++EDD A ++ + + V G++ ++ FDA+I+D+ L G Sbjct: 1 MTILVVEDDPRTAEALRESITDAGWTAEVLMRGDEAVQCISTQAFDAVIMDIMLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR STPV +LS ++ ++ GL +GADDY++KPF+ E+VARIRAI RR Sbjct: 61 SIVKQLRAMHNSTPVLMLSARGDVDHRISGLDAGADDYLAKPFSMGEVVARIRAIARRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ DL++++ + + G I L+ +E++++++L +T + M L ++D Sbjct: 121 ESGAILLRLADLTLDVPHRVAQRAGKNIELSPREFRLVQVLMQNVDTVCNRTMLLRLVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++DV++ KLR K+ + + TV G GY++ + Sbjct: 181 YNFDPGTNLVDVYVRKLRDKI-DQGHAIPLLHTVRGVGYLMSD 222 >gi|145223425|ref|YP_001134103.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145215911|gb|ABP45315.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 251 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 122/229 (53%), Gaps = 13/229 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ LA + L+ + F V G D I + + ++ D +ILDLGL I G E Sbjct: 19 RALVVDDELPLAEVVASYLERDQFEAVVAGNGVDAIAVARDFDPDVVILDLGLPGIDGLE 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + V +L+ + D V GL GADDYI+KPF+ ELVAR+RA++RR R Sbjct: 79 VCRQLRTFSDAY-VVMLTARDTELDTVLGLTVGADDYITKPFSPRELVARVRAMLRRPR- 136 Query: 122 HAQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 QS T G LSV++ A+ V + +I LT E+ ++E LS R L+ Sbjct: 137 VLQSATATAEREVAPPRRFGALSVDVAAREVGIDDEQILLTRTEFDILEALSGRPGIVLS 196 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L + DG ++DV I LR+KL + A YI TV G GY Sbjct: 197 RRQLLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAARPRYIATVRGVGY 245 >gi|120598744|ref|YP_963318.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|146293179|ref|YP_001183603.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|120558837|gb|ABM24764.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145564869|gb|ABP75804.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] gi|319426309|gb|ADV54383.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 219 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI+L+ED++ LA I L L V + + ++ K F AI+LDLGL D G Sbjct: 1 MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNETFSAIVLDLGLPDGNGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A R IS P +L+ ++ + K+ L GADDY+ KPF+ EL ARIRAIVRR Sbjct: 61 DLLKAWRQQGISIPTIVLTANTNFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + ++ G L ++L+ + V + I L+ +E+Q++ L+ LT+ L L Sbjct: 121 GLDHNSLIVGALCIDLNTRDVTFREQNIQLSRREFQLLLELAQSAGRVLTRGQ-LEQLTY 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DE I+V I LRKKL+N I+TV G GY L E Sbjct: 180 GWDEVGSNSIEVHIHHLRKKLAN-----ELIKTVRGIGYTLIE 217 >gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] Length = 225 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL++DD AL + L+ F V GE +EL F D IILDL L + GF Sbjct: 1 MRVLLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALEL--FPRADLIILDLMLPKLDGF 58 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + P+ +L+ E++V+GL+ GADDY+ KPF+ +E+VAR++A++RR+ Sbjct: 59 KVLEEVRRERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEVVARVKALLRRA- 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + L G L + + ++G + L+ E+ ++ L+ T+E L ++ Sbjct: 118 GLKEEL-CYGPLRLLPKERQAYLEGKPLPLSQLEFDLLLTLAQHPGMVFTRERLLEKVW- 175 Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G D P + +++DV I LRKKL + +IETV G GY RE Sbjct: 176 GPDFPGIDRVVDVHIAALRKKLMDDPENPRFIETVRGVGYRFREG 220 >gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 244 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 124/236 (52%), Gaps = 22/236 (9%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ +A I L L E + + G + ++L + Y D ++LD+ L + G++V Sbjct: 6 ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGMDGYQV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R +TP+ +LS + DKV GL+ GADDYI KPF+ ELVAR+ A++RR Sbjct: 66 CTEIRKTS-NTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAMT 124 Query: 119 ---------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 S H + + L VN+ TV +GH + + KE +++ L+ Sbjct: 125 ESAQKQPQSAAYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLAS 184 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R N T+E L+ L+ + + +DV I +LR+KL+N I TVWG GY Sbjct: 185 RPNQVFTREQLLDKLWGYEYVGDTRTVDVHIKRLREKLNNNHNWS--IATVWGIGY 238 >gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 227 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 128/227 (56%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ L+++D+K + I L E ++V G + I K +D +ILD+ L + G Sbjct: 3 IKALVVDDEKLIVKGIVFSLSQEGWDVDSAYDGAEAINAIKSENYDVVILDVMLPEYTGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV + +R + P+ +L+ DK+ GL+ GADDYI+KPFN EL ARI+A++RRS Sbjct: 63 EVCQIVREFS-NVPIIMLTAKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAVLRRSI 121 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + GDL + ++K V + + I+LT KE+ M+EL + + +E L+ Sbjct: 122 QEKETEKKTLEIGDLRLECNSKRVFLNNNEINLTSKEFDMLELFATHRGKVYNREQLLDS 181 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ G+ P +V+ +DV + +LR+K+ G YI T WG GY ++ Sbjct: 182 IW-GKGYPGDVRTVDVHVRRLREKVEPNPGQPEYIYTKWGVGYYFKD 227 >gi|331270596|ref|YP_004397088.1| two-component response regulator [Clostridium botulinum BKT015925] gi|329127146|gb|AEB77091.1| two-component response regulator [Clostridium botulinum BKT015925] Length = 231 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 132/226 (58%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+++++ I+L+L+ ++F V GEDGI+ +ILD+ L I GF+ Sbjct: 6 KVLVIEDEQSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPGINGFK 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V LR + +L+ + DK++GL+ GADDY+ KPFN EL ARI +++RR Sbjct: 66 VCEILRKNHPKVGIIMLTALGQDVDKIKGLEHGADDYMIKPFNPLELAARIISLIRRMNF 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + ++++ V+L++KT +++LT KE+ ++++ +L+++ L+ Sbjct: 126 SNDTSSEILISEPFKVDLNSKTAYKNEEKLNLTPKEFLLLKIFIENIGRSLSRDKLLDLA 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + KI+DV I +LR KL + Y++TVWG GY+ +E+ Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGIGYIWKED 231 >gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20] Length = 248 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++ LA + L+ E + V G + + + D I+LD+ L D G Sbjct: 17 LRVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGL 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R + + PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS Sbjct: 77 EVMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + SL+ GDL ++ D+ V I LT E++++ L L+K L+ Sbjct: 137 ASEEKQASLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILDR 196 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ + I++++I LR+K+ G + I T+ G GYVL+ A Sbjct: 197 VWNYDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVLKPAA 242 >gi|300113904|ref|YP_003760479.1| winged helix family two component transcriptional regulator [Nitrosococcus watsonii C-113] gi|299539841|gb|ADJ28158.1| two component transcriptional regulator, winged helix family [Nitrosococcus watsonii C-113] Length = 219 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 123/220 (55%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ ALA + + K + V G D + +D ++LDLGL + G Sbjct: 1 MRLLLVEDNVALADELLPLFKGYGYAVDWRVDGRDALLAVHDESYDMVVLDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R ++ PV IL+ + +++ GL++GADDY+SKPF+ +EL+ R++A++RRS Sbjct: 61 QVLQHWRAEGVTLPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSH 120 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S + G L+++ D ++V LT E++++ L L++ HLY Sbjct: 121 GTVNSPRLEAGGLALDEDRQSVWQGDQEYELTRGEFRLLRCFMLHPGKVLSRMELNEHLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG E + +++V I +LR+KL G IET +GY Sbjct: 181 DGESERDSNVLEVHISRLRRKL-----GDPVIETRRSQGY 215 >gi|257867607|ref|ZP_05647260.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873937|ref|ZP_05653590.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257877695|ref|ZP_05657348.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325571255|ref|ZP_08146755.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257801663|gb|EEV30593.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808101|gb|EEV36923.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257811861|gb|EEV40681.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325155731|gb|EGC67927.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 228 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 132/226 (58%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K LA +EL LK E +N V G G++ E+DAI+LDL L ++ G EV Sbjct: 4 ILIIEDEKNLARFVELELKHEGYNTEVHYNGRTGLDAALNNEWDAILLDLMLPELNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116 R +R +K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA I Sbjct: 64 CRRVRQSK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+ I DL++ + + V I LT +EY+++ L N L +++ LN Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRGTDVIELTKREYELLLTLMENVNVVLARDVLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + G ++YI+TV G GYV+R Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227 >gi|206900228|ref|YP_002251690.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12] gi|206739331|gb|ACI18389.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12] Length = 220 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDDK +AH +EL L E V V G D + + ++ D +ILD+ L + G Sbjct: 1 MKILVLEDDKKIAHLLELELTHEGHEVRVVGDGYDALIEAEEFKPDVVILDIMLPGLSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR + +L+ + ++DKV GADDY+ KPF+ EEL+ARI+A+ RR + Sbjct: 61 EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFNLGADDYVVKPFSIEELLARIQAVARR-K 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I + + + +D V V G + L+ E+ ++ LL +N L+KE L+ ++ Sbjct: 120 ERKEEVISSEGIELYVDQHRVIVDGKEVDLSKTEFSLLYLLMKNENIVLSKEKILSSIWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D+ +++V+I LRKKL + YI+T+ G GY R++ Sbjct: 180 DYDDERENLVEVYINYLRKKLGDKG---KYIKTIRGIGYSFRKD 220 >gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 116/218 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPGALEAGMQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPQQAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|220922718|ref|YP_002498020.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947325|gb|ACL57717.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 221 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD ALA + L+ V G + L + I+LD+GL + GF Sbjct: 1 MRVLVVEDDAALARGLVAALRLAGLAVDHEADGAEAARLALSEPYSLIVLDVGLPGLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R AK + PV IL+ ++ D+VRGL GADDY+ KPF E AR+RA++RR + Sbjct: 61 EVLRRIRAAKSAVPVMILTARDAVTDRVRGLDLGADDYLLKPFAPAEFEARVRALIRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ G LS++ TV + + L +E ++ +L R + KE ++ Sbjct: 121 GLPNPVLRCGALSLDRATGTVTLGDEPVSLRRRELAVLTVLMARAGQVVPKERLSGEVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++++ +LRKKL I T+ G GY+L Sbjct: 181 FDEAVAPNALELYVARLRKKLQP---NGPEIRTIRGLGYLL 218 >gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590] Length = 241 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 129/237 (54%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+FN++ G++ EL + + I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 65 ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 SAEQSEPHARDIIEFNHLLIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + I+TVWG GY A DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEDAAQMIQTVWGVGYKFEVRASDEPT 240 >gi|167629619|ref|YP_001680118.1| transcriptional regulator [Heliobacterium modesticaldum Ice1] gi|167592359|gb|ABZ84107.1| transcriptional regulator [Heliobacterium modesticaldum Ice1] Length = 223 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD+ L I+ ML+ E +V G+D K +D ++LD + + G Sbjct: 1 MRILLAEDDQRLGKLIDHMLRREGHDVDWVQRGDDAYHYAKASHYDLLVLDWMMPAMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR + P+ +L+ ++ED+V+GL +GADDY+ KPF EL+AR+RA+ RR + Sbjct: 61 ILCRQLRQEGLQCPILMLTAKDAVEDRVQGLDAGADDYLVKPFASAELMARLRALSRRGK 120 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q IV DL +N + +V G I LT +E+ +++LL K L +E+ + ++ Sbjct: 121 IPLQEEIVQVADLLLNRNRHSVTRGGKEITLTSREFALLDLLVQNKGQVLPRELIMERVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +D +I LRKK+ G I + G GY L E Sbjct: 181 GLDADVTDNTLDAYIRLLRKKIE-PPGAAKLIHNIRGVGYTLEE 223 >gi|256852704|ref|ZP_05558075.1| response regulator [Enterococcus faecalis T8] gi|256712049|gb|EEU27086.1| response regulator [Enterococcus faecalis T8] Length = 228 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K LA +EL LK E + V G G+E E+DAI++DL L ++ G EV Sbjct: 4 ILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILIDLMLPELNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116 R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA I Sbjct: 64 CRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+ I DL++ + + V I LT +EY+++ L N L +++ LN Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + G ++YI+TV G GYV+R Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227 >gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 230 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ ++ L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETTEKMIQIGDLTLDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|56479001|ref|YP_160590.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1] gi|56315044|emb|CAI09689.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1] Length = 219 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD +L I LK E + V +V D G + F +LDLGL + G Sbjct: 1 MRVLLVEDDASLGEGILTSLKPEGYTVDWVRD-GSSALHALTHESFGLAVLDLGLPRLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVLR LR A+ TPV +L+ +I D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 60 LEVLRQLRAAENPTPVLVLTARDTIADRIAGLDAGADDYLVKPFDVAELKARLRALLRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + ++++ ++ V G + L KE+ ++ L + LT++ LY Sbjct: 120 FNRPQPALEYRGITLDPASQLVTWNGQTVSLQRKEFILLHELIAQPGRVLTRDKLQQVLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E E ++V I LRKK I TV G GY++ Sbjct: 180 GWGEEAESNALEVHIHHLRKKFF-----PELIRTVRGVGYLV 216 >gi|213971813|ref|ZP_03399916.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas syringae pv. tomato T1] gi|301382522|ref|ZP_07230940.1| transcriptional activator CopR [Pseudomonas syringae pv. tomato Max13] gi|213923428|gb|EEB57020.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas syringae pv. tomato T1] Length = 227 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ ED+ ++ L FNV G + + +D +ILD+ + I G+ Sbjct: 1 MKILVAEDEPKTGMYLQQGLLEAGFNVDRVLTGTEALHQALNESYDLLILDVMMPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++++R A PV L+ ++D+VRGL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 DVIQSVRAAGSLVPVLFLTARDGVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGA 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + I GDL V+L + G RI LT KE+ ++ELL R+ L+K + + ++ Sbjct: 121 GAPNLTSIKIGDLEVDLLKRRASRSGQRIDLTAKEFALLELLMRRRGEVLSKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V I +LR K+ + K I+T G GY+L Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFDTK-LIQTSRGMGYML 221 >gi|118480165|ref|YP_897316.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|118419390|gb|ABK87809.1| response regulator [Bacillus thuringiensis str. Al Hakam] Length = 225 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTQEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQNETTFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 225 >gi|189913071|ref|YP_001964960.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913405|ref|YP_001964634.1| Two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777747|gb|ABZ96047.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781473|gb|ABZ99770.1| Two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 241 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 127/231 (54%), Gaps = 10/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD + + I L S ++ V + GEDG++ K D +ILDL L DI G E+ Sbjct: 4 ILVIEDDPDIGNLIRKSLDSAHYTTSVFENGEDGLKFYKSNHPDLVILDLSLPDIDGMEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R++R + STP+ ILS + D++ GL+ GADDYI+KPF+ EL R+ RR Sbjct: 64 CRSIRKSDESTPIFILSARTEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWDKK 123 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G A I+ G L ++ + V + + I+++ KE+ +++LL+ ++EM Sbjct: 124 IGIKPNVGQAGE-IIRGALKIDSIRRRVTLNENIINISRKEFDILQLLAGSPGKVFSREM 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + ++ID I ++R KL + +IET+WG GY +N Sbjct: 183 ILESVWGVEWDGFERMIDSHIKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233 >gi|116252033|ref|YP_767871.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256681|emb|CAK07769.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 219 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LLIEDD AL +I + ++ +V +V L + G + +D ++LDL L D G Sbjct: 1 MRVLLIEDDTALGAAIRDQIAADGHSVDWVNRLDQAGDAIVA-AAYDLVLLDLMLPDGLG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 L+ LR TPV IL+ + + D++ GL +GADDY+ KPF+ EL ARI ++ RR Sbjct: 60 IPFLKGLRGRGDVTPVMILTALDQVTDRIAGLNAGADDYMVKPFDLAELSARIGSVARRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ I G L+++L A+++ + G I LT +E+ + E R L+K LY Sbjct: 120 AGNPNPNITLGPLAIDLAARSITLNGKAIVLTAREWVLFEAFLQRPGQLLSKAQLEERLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + I+V + +LRKKL G + IET G GY L Sbjct: 180 SFDREIDSNAIEVHVSRLRKKL-----GTHVIETERGLGYRL 216 >gi|307823347|ref|ZP_07653576.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307735332|gb|EFO06180.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 223 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K A + L + F V V GE+G+ L +D IILD+ + G+ Sbjct: 1 MRILIVEDEKKTAAYLHKGLTEQGFIVDVGIDGEEGLLLATTIAYDLIILDVMVPLRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR TPV L+ +I+D+V+GL+ GADDY+ KPF EL+ARIR+I+RR Sbjct: 61 SVLRELRRGGKQTPVLFLTARDAIDDRVKGLELGADDYLVKPFAFVELLARIRSILRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL+++ G R+ L+ KE+ ++ L R L++ + ++D Sbjct: 121 ARQAEHLALADLALDPIRHKAFRNGQRLDLSPKEFALLSLFLQRPAEVLSRTLIAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+DV I +LR+K+ + K + TV G GYVL + Sbjct: 181 VHFDSDTNIVDVAIRRLRQKIDDPFPQK-LLHTVRGVGYVLEQR 223 >gi|254000175|ref|YP_003052238.1| winged helix family two component transcriptional regulator [Methylovorus sp. SIP3-4] gi|313202139|ref|YP_004040797.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gi|253986854|gb|ACT51711.1| two component transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] gi|312441455|gb|ADQ85561.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 223 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 120/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L +I L + V T G+ +DA++LDLGL + G Sbjct: 1 MRVLLVEDDAVLGDAIHRSLIKSGYAVDWTQDGQQADVALHEQVYDAVVLDLGLPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR K PV ILS ++D+V GL GADDY++KPF EL AR+RA +RRS Sbjct: 61 EVLRRLRQRKQLVPVVILSAREGLDDRVHGLDLGADDYLTKPFKLPELEARLRAQIRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S I G + + +TV V G + + +E ++E L LR ++KE + +L + Sbjct: 121 QVVTSYIDFGPMRFDSTDRTVTVNGALVEFSQRELSVLEALILRSGRVVSKESLVENLCN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I+V++ +LRKKL I TV G GY+L + + Sbjct: 181 WDVDVGNNAIEVYVHRLRKKLEPYG---ILIRTVRGLGYLLEKQS 222 >gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99] gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99] Length = 228 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +IL+++DDK + + I + L++E+ T ED IE + E FD IILD+ + ++ Sbjct: 4 KILIVDDDKEIRNLISVYLENEDLK---TQKAEDAIEALQLLEEKEFDLIILDIMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 61 GIEACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119 Query: 119 SRG------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +S++ GDL+VN D V V+G LT KE+ ++ELL+ K + L+ Sbjct: 120 FKKYNTPIEYNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGSVLSVA 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R K+ + YI+TVWG GY Sbjct: 180 KIYETVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226 >gi|220929731|ref|YP_002506640.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220000059|gb|ACL76660.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 226 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 118/222 (53%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED K + + +L E F V+ T G DG + K +D I+LD+ L G E Sbjct: 3 KILIIEDSKDVNSMLTEVLTEEGFEVFSTYTGTDGFKEIKKNTYDLILLDIMLPFKSGDE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R PV I+S + K+ L+ GADDYI+KPF+ E+VAR+ A +RRS Sbjct: 63 ILKEVRQFS-DIPVIIISAKDMVGTKIDLLKMGADDYITKPFDLGEVVARVSANLRRSHR 121 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ + D++VN DAK V V + LT KEY ++ELL +N TK ++ Sbjct: 122 KTQTEKELRYKDMTVNTDAKRVYVNNTELDLTAKEYGIVELLIKNRNKVFTKATLYETIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I LR KL A K YIETVWG GY L Sbjct: 182 QDAYLGDDNAVKTHISNLRAKLKIANTQKEYIETVWGLGYRL 223 >gi|260776888|ref|ZP_05885782.1| two component response regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260606554|gb|EEX32828.1| two component response regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 223 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD +A I L + ++ + G+ FD II D L + G Sbjct: 1 MKLLLVEDDAEIAEFIHKGLTEQGHSLCHEPDAKTGLVRAASESFDVIIFDRMLPSMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R LR +++ +P+ IL+ SI D+V GL++GADDY+ KPF EEL AR++A+ RR Sbjct: 61 DAIRVLRQSQVHSPILILTAKDSIGDRVAGLEAGADDYMVKPFAFEELNARVKALARRQP 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + G L+++ ++ V G + L +EYQ++ELL + + +T+ M L ++ Sbjct: 121 VSQASTQLTAGPLTLDKLSRKVTHSGTEVDLLPREYQILELLMVNQGELVTRTMLLEQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P ++ + +LR K+ + A I+TV G GYVL Sbjct: 181 GFQFDPNTSLVQTHVSRLRNKV-DKAFNTELIKTVRGAGYVL 221 >gi|257439219|ref|ZP_05614974.1| transcriptional regulatory protein CutR [Faecalibacterium prausnitzii A2-165] gi|257198352|gb|EEU96636.1| transcriptional regulatory protein CutR [Faecalibacterium prausnitzii A2-165] Length = 225 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+IED+ AL +I L+ ++V GE +EL +D ++LDL L G Sbjct: 1 MHLLVIEDEHALCETIVRSLRRLAYSVDYCYDGEKALELLGVECYDLVLLDLNLPKKDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR T V ILS S +EDKV+GL +GA+DY++KPF+ EL ARIR++ R Sbjct: 61 TVLRALRQTDRETRVLILSARSEVEDKVQGLDAGANDYLAKPFHLAELEARIRSLTLRQF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ G LS + ++T V G + LT KE ++E L + + +++E ++H++D Sbjct: 121 TQQNVLLSCGGLSFDTRSRTAAVNGQTLTLTRKETGILEYLMVHQGRPVSQEELIDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I V I LRKKL A G + I G GY++ Sbjct: 181 NSVDSFSNSIRVHISALRKKL-RAVLGYDPIRNRIGEGYLM 220 >gi|225548096|ref|ZP_03769381.1| hypothetical protein RUMHYD_00075 [Blautia hydrogenotrophica DSM 10507] gi|225040772|gb|EEG51018.1| hypothetical protein RUMHYD_00075 [Blautia hydrogenotrophica DSM 10507] Length = 225 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ L ++++ L+ E F V GED + + D I+LD L + G Sbjct: 1 MRILLVEDDENLCYTLQYQLEQEGFLVDTCMDGEDALFFIRERVHDLILLDRMLPSMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL+ALR KI TPV L+ +SS++DK+ GL GADDY+ KPF EEL+ARIR + RR Sbjct: 61 SVLKALRREKIFTPVIFLTALSSLQDKITGLDCGADDYMVKPFAFEELMARIRCLSRRPQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S+I GD+S + D K + L+ KE ++E+ L ++ L+ ++ Sbjct: 121 KWEGSSVISLGDISFDPDQKKLFCHTKECSLSKKEGALMEIFLRNPGQILPRQTLLSRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E +D +I LR++L + + ++ V G GY L Sbjct: 181 GPDSEVEDGNLDNYIYFLRRRL-RSVDSRLELKAVRGVGYQL 221 >gi|283786785|ref|YP_003366650.1| transcriptional regulator [Citrobacter rodentium ICC168] gi|282950239|emb|CBG89875.1| transcriptional regulator [Citrobacter rodentium ICC168] Length = 224 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L F V G L + +LD+ + I G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSESYALAVLDINMPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR + PV +L+ S++ D+V+GL +GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNAGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q L GDL+ + D +Q + LT +E ++ +L R+ ++++ ++ Sbjct: 121 GQVQELQQLGDLAFH-DEGYFLLQQQPLALTPRELALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + I+++I +LRKKL G I T+ G GY+L Sbjct: 180 LNDEVSPESIELYIHRLRKKLH---GSNVRITTLRGLGYLL 217 >gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8] gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8] Length = 247 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 132/235 (56%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L E + V GE+ +++ + D I+D+ L I GFE Sbjct: 13 KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 72 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++R +R + +TPV LS DKV GL+ GADDYI+KPF+ EL+AR++AI RR Sbjct: 73 LVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 132 Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 QS I+ DL ++++ V+V+G +++LT E++++ L+ + ++++ Sbjct: 133 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 192 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K++ Sbjct: 193 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 247 >gi|94311936|ref|YP_585146.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|94312967|ref|YP_586176.1| winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|94313900|ref|YP_587109.1| winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|241765752|ref|ZP_04763697.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|93355788|gb|ABF09877.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gi|93356819|gb|ABF10907.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gi|93357752|gb|ABF11840.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gi|241364378|gb|EER59508.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|254966516|gb|ACT97243.1| MmfR [Synthetic plasmid pMOL98] gi|325528823|gb|EGD05874.1| winged helix family two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +I+ LK ++ G+ + +D ++LDLGL G Sbjct: 1 MRVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL ++R P+ I++ ++D++RGL GADDY+SKPF EL+AR+RA++RR Sbjct: 61 EVLASIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV---QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A ++ G V LD T E G ++ L+ +E+ +++ L +R L++ + Sbjct: 121 GTAAPVLSNG--VVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDR 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +Y +E E ++ I LR+KL G I+ V G G+++ + A Sbjct: 179 IYGWGEEVESNAVEYLIHALRRKL-----GGEVIKNVRGVGWMVSKGA 221 >gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bifidobacterium dentium JCVIHMP022] gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1] gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bifidobacterium dentium JCVIHMP022] Length = 248 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 127/231 (54%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+TPV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 181 GRDEPEVKIIDVFICKLRKKLSNA----AGGKNY-----IETVWGRGYVLR 222 + I++ +I LRKK+ A G+ + IET G GY++R Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIR 244 >gi|261346014|ref|ZP_05973658.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM 4541] gi|282565899|gb|EFB71434.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM 4541] Length = 224 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRIL++ED+ L H + + LK + V D ED E F D ++DLGL D Sbjct: 1 MRILIVEDNALLRHHLTVQLKDLSHQV---DSAEDAKEADYFLNESHPDIAVVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +++ R ++ P+ +L+ S ++KV+ L SGADDY++KPF EELVAR++A++R Sbjct: 58 DGLSMIKRWRSNHVTIPILVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A ++ + ++L K V G + LT EY +IE L ++K+ + Sbjct: 118 RNSGLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQ-FHEQEVIVTVRGQGY 218 >gi|167561730|ref|ZP_02354646.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] gi|167568964|ref|ZP_02361838.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 220 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + LK++ V GE + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGEAYDLLLLDLGLPKRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR ++ PV IL+ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++S+I G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G + I V G GY++ + A Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 220 >gi|221067068|ref|ZP_03543173.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220712091|gb|EED67459.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 227 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ + L + + G DG+ + E+ +ILD+ L + G+ Sbjct: 1 MRVLIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHMALQGEYSLVILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ALR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I+R R Sbjct: 61 QVLQALRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILR--R 118 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 GH + + DL ++L + V G R+ LT KE+ ++ELL R L + + + Sbjct: 119 GHPANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +I+V + +LR K+ K I+TV G GYVL Sbjct: 179 VWDMNFDSDTNVIEVAMRRLRAKIDEGHSIK-LIQTVRGMGYVL 221 >gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 234 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 127/227 (55%), Gaps = 11/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ +A ++ + E F V + GE+ + + +FD +ILD+ L + GF Sbjct: 4 RILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASDFDLVILDIMLPKLDGFT 63 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 V R +R + ST P+ +L+ DKV GL+ GADDY++KPF+ EL+AR+RAI+R Sbjct: 64 VCREIR--RFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRRTR 121 Query: 118 -----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RSR A ++ GD+++NL + V + LT +E++++ L ++E Sbjct: 122 VAESSRSRTAADEILREGDITINLTSYEVRKGDKLLELTPREFELLRFLMAHAGQVFSRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ +V+ +DV + +LR+KL + YI+T G GY Sbjct: 182 ALLEEVWGYDYYGDVRTVDVTVRRLREKLEENSARPEYIKTRRGVGY 228 >gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16] gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16] Length = 240 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ L I LK+E + V GE+ +EL + +FD IILDL + I G + Sbjct: 10 KILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELAREGKFDLIILDLMMPKIDGLQ 69 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +R+ + S P+ +L+ S DK+ G + GADDYI+KPFN EL AR+RA++RRS Sbjct: 70 A--CMRIREFSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRALLRRSG 127 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + A + G + ++ + ++ G + LT KE+ ++ELL ++E LN Sbjct: 128 AAVQHQAAGQLTVGHIRLDPNERSAWKDGVSVDLTAKEFDLMELLMRNPGRVYSRENLLN 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + +DV + +LR+KL YI T WG GY L Sbjct: 188 VVWGYEYIGDYRTVDVHVRRLREKLELDPANPQYIRTKWGVGYYL 232 >gi|206562188|ref|YP_002232951.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198038228|emb|CAR54181.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 220 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDDK + +E L V G + +D ++LDLGL + G Sbjct: 1 MRVLLVEDDKLVGSGVEDGLIEAGMTVDWAHDGRHAQLALETTPYDLVVLDLGLPRMSGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +R + TPV +++ ++ D+V GL +GADDY+ KPF+ EL+AR RA+VRRS+ Sbjct: 61 DLLGWIRKRRDHTPVLVMTARDTVADRVSGLSAGADDYLGKPFDLAELIARCRALVRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G I G+L+V+ TV RI LT +E ++ L + L++ + LY Sbjct: 121 GRGTDTIEYGELTVDPALMTVVRGAERIALTSRECALLVELLANQGRPLSRAQLQDSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E E I+V + LRKKL G I T+ G GYV+ Sbjct: 181 WNEEIESNAIEVHVSNLRKKL-----GAELIRTIRGVGYVV 216 >gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +++ IE LK + V GE E K + D I+LDL L + G + Sbjct: 5 KILIVDDEPSISMLIEFNLKLAGYEVRCVHDGEAVFEHLKPFRPDLIVLDLMLPKMDGIQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + + DK+ GL +GADDY++KPF+ +EL++RI+AI RR + Sbjct: 65 VCRELRRQNNAVPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFRRVQA 124 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + G L V + + V ++G I LT KE++++ L + L+++ L+ Sbjct: 125 LPGSNDTVVYEYGRLKVYPEQREVRIEGKLIELTPKEFELLVFLCRHRGKVLSRQQLLHG 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + +I+DV I LR K+ A YI TV GY L Sbjct: 185 VWDYHFLGDTRIVDVHISHLRDKIEKNARTPEYIITVRNVGYKL 228 >gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX] gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX] Length = 230 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ +L+ E F V V G +E+ D ++LDL L + G E Sbjct: 3 RVLVVEDEESYSDALSYLLRKEGFEVAVAPTGTSALEIFDRTGADLVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR K + PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRTLR-QKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRTA 121 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S++ G + ++++ V V+G + L KE++++E+L LT+ ++ + Sbjct: 122 DDTVLPSVLEAGPVRMDVERHVVTVRGENVQLPLKEFELLEVLLRNAGRVLTRPQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV I +LR K+ +I TV G GY Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIETDPSKPQHIITVRGLGY 222 >gi|297562775|ref|YP_003681749.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847223|gb|ADH69243.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 222 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 3/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD +++ + L+ E + V VT G + ++ + + D ++LDLGL ++ G EV Sbjct: 4 VLLAEDDVSISEPLARALRREGYTVDVTVNGVETLDRARAGDIDLMVLDLGLPEMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR TP+ IL+ + D V GL +GADDY++KPF EL+AR+RA++R RG Sbjct: 64 ARRLRAEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR--RGG 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A+ +V G + ++ D++ + + LT KE+ ++ +L +T+E + ++D Sbjct: 122 AEVPVVHG-VRIDNDSRRAWLGERELQLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LR+KL + A +YI TV G G+ Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDANQPSYITTVRGVGF 217 >gi|295704707|ref|YP_003597782.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294802366|gb|ADF39432.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 227 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+ ++A L+ +F + V G+ G+E FD +ILD+ L + GFE Sbjct: 3 KILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R AK P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 VCKQIRAAK-DIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + +I L+++ A+ V V + T KE+ +++ + N L+KE Sbjct: 122 LSDKQEKRMIHIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+KL Y+ETVWG GY Sbjct: 182 IWGFDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGY 223 >gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 237 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 128/228 (56%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + VY GE+ +E + D I+LDL L + G E Sbjct: 6 KILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEVDPDLILLDLMLPKMDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 66 VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 124 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +A S + GDL+++ DA V G I LT +E++++ L+ +T+E Sbjct: 125 AAKEADDNANSELTIGDLTIHPDAYMVTKNGAAIELTHREFELMHYLAKHLGQVMTREHL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ ++ NY+ T G GY LR Sbjct: 185 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYLR 232 >gi|52140967|ref|YP_085862.1| response regulator [Bacillus cereus E33L] gi|51974436|gb|AAU15986.1| response regulator [Bacillus cereus E33L] Length = 230 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDFSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + I GDL+++ TVE G + LT KE+++++L +N TK Sbjct: 124 SATETTEKTIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|107023057|ref|YP_621384.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686702|ref|YP_839949.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170735469|ref|YP_001774583.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105893246|gb|ABF76411.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116652417|gb|ABK13056.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169821507|gb|ACA96088.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 225 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ F+V + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLTLAQEERYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 AVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETEHLAVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIHTVRGVGYVL 219 >gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 230 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 131/232 (56%), Gaps = 8/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+I++++D++A+ S+ L ++V++ + G +E+ + + + +ILD+ + + G Sbjct: 1 MKIVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKEQPELVILDVMMPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R+++RR+ Sbjct: 61 EVCRTLRSAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G +Q + DL +N D + V G I LT E+ +++LL L++ L Sbjct: 121 ADAVGGPSQGELTFDDLKLNPDTRDVTRGGRHISLTRTEFALLQLLMANARRVLSRSTIL 180 Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ G D P ++V+I LR+K + + G I TV G GYVLR+ A Sbjct: 181 EEVW-GYDFPTSGNALEVYIGYLRRK-TESEGEPRLIHTVRGVGYVLRDTAP 230 >gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 227 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+ ++A L+ +F + V G+ G+E FD +ILD+ L + GFE Sbjct: 3 KILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R AK P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 VCKQIRAAK-DIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + +I L+++ A+ V V + T KE+ +++ + N L+KE Sbjct: 122 LSDKQEKRMIRIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+KL Y+ETVWG GY Sbjct: 182 IWGFDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGY 223 >gi|218778981|ref|YP_002430299.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760365|gb|ACL02831.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 234 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD+ LA + L+ V ++ GE G++ + FDAI+LDL L G V Sbjct: 8 ILMIEDDQRLAKLTQEYLERNGLAVSLSGDGEAGLQQALQHRFDAIVLDLMLPARDGISV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +++ D+V GL+ GADDY+ KPF+ EL+ARIRA+VRR+RG Sbjct: 68 CQRIR-EHSDAPIIMVTARGEEADRVMGLEIGADDYLPKPFSPRELLARIRAMVRRARGQ 126 Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A S++V GDL ++ A T + G + LT E+ +++ L+ R L++E + Sbjct: 127 AGPRSSVVVVGDLMLDPAALTAVLDGAPLDLTTYEFALLKALAERAGQVLSRERLMELAK 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E + IDV I +LR+K+ + I TV G GY Sbjct: 187 GNAEEAFDRSIDVHISRLRQKIGDDPRHPTRIRTVRGAGY 226 >gi|126437395|ref|YP_001073086.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126237195|gb|ABO00596.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 233 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 118/212 (55%), Gaps = 6/212 (2%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F+V G + + DAI+LD+ + + G V+ ALR P Sbjct: 22 SLERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL----IVTG 130 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR RG + + I G Sbjct: 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR-RGSSATFSSETIQVG 140 Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190 L V++ + V G + LT +E+ ++ +L+ K L++ L ++ + ++ Sbjct: 141 PLEVDIPGRRARVNGADVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVV 200 Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DVFI LR+KL A G + TV G G+VLR Sbjct: 201 DVFIGYLRRKL-EAGGAPRLLHTVRGVGFVLR 231 >gi|169629014|ref|YP_001702663.1| putative transcriptional regulatory protein PrrA [Mycobacterium abscessus ATCC 19977] gi|169240981|emb|CAM62009.1| Putative transcriptional regulatory protein PrrA [Mycobacterium abscessus] Length = 236 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD + +S+ L+ F+V V G D + E DA++LD+ + ++ G Sbjct: 10 KVLMVDDDPDVRNSVARGLRHSGFDVRVAVDGRDALTQLAADEPDALVLDVQMPELDGVA 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV----ARIRAIVR 117 V+ ALR P+C+LS ++ D++ GL++GADDY++KPF+ ELV A +R Sbjct: 70 VVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLRALLRRRGA 129 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G A S I G ++V++ + V V G R+ L+ +E+ ++ +L+ L++ L Sbjct: 130 GSGGLADSAITVGQITVDVSRRLVFVNGERVELSKREFDLLVVLAENTGVVLSRTRLLEL 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E + DVF+ LR+KL A G I TV G GYV+RE Sbjct: 190 VWGYDFDVETNVADVFVSYLRRKL-EAGGAARVIHTVRGVGYVMRE 234 >gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC 27678] gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC 27678] Length = 243 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 127/231 (54%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+TPV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 69 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNA----AGGKNY-----IETVWGRGYVLR 222 + I++ +I LRKK+ A G+ + IET G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIR 239 >gi|146279695|ref|YP_001169853.1| histidine kinase A domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145557936|gb|ABP72548.1| histidine kinase A domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 220 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+ + L+ F+ ED FDA++LDL L D G Sbjct: 1 MRILVVEDDAVLSDGLRAGLRIAGFSPETVASLEDARAALLAGRFDAMVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +R A ++ PV +L+ ++D+VRGL GADDY+ KPF EEL AR+RA+ RR Sbjct: 61 DLLVEVRSAGLAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ ++++L A + L+ +E+ ++ L R L+K LY Sbjct: 121 ALSETRPAWNGVTLDLAALVASRADGPVPLSPREFSVLRALMDRPRAVLSKAQLEEQLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++E E ++V I KLR KL G ++IETV G GY L E Sbjct: 181 WQEEIESNAVEVHIHKLRSKL-----GHDFIETVRGAGYRLAE 218 >gi|332827589|gb|EGK00335.1| hypothetical protein HMPREF9455_03474 [Dysgonomonas gadei ATCC BAA-286] Length = 227 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIED+ ++ + L+ ++V + + G D L E+ I+LD+ L DI G Sbjct: 1 MEILLIEDNHRISEFVVKGLEETGYSVVLAENGVDARSLISEKEWSLILLDIMLPDIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E+L+ R KI+TP+ ++S + EDK+R L GADDY++KPF EL+A I A+ RR+ Sbjct: 61 ELLQYTRYKKINTPILVISALGDAEDKIRALDCGADDYLTKPFLLRELIAHINALTRRAG 120 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A ++ DL + D VE G I LT +E+++++LL K+ L++ L+ Sbjct: 121 LKYDVASDVLECDDLKLFKDRHRVERGGEEIKLTMQEFKLLKLLMENKDKVLSRAQLLDT 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + ++DV+I LR K+ + G I+TV GRGY++ Sbjct: 181 VWGVNYDTNTNVVDVYISYLRNKI-DTDGHVKLIKTVKGRGYMI 223 >gi|161522391|ref|YP_001585320.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221198526|ref|ZP_03571571.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2M] gi|221207755|ref|ZP_03580762.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2] gi|160345944|gb|ABX19028.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|221172252|gb|EEE04692.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2] gi|221180977|gb|EEE13379.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2M] Length = 272 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G G+ L + +DA+ILDL L + G E Sbjct: 39 RILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLMLPGVDGLE 98 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 99 ICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 158 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G LS++ A+ V G RI LT +E+ ++ + ++ Sbjct: 159 LARDSRIDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 217 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 218 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 264 >gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima] Length = 239 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 132/235 (56%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ + L E + V GE+ +++ + D I+D+ L I GFE Sbjct: 5 KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++R +R + +TPV LS DKV GL+ GADDYI+KPF+ EL+AR++AI RR Sbjct: 65 LVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 124 Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 QS I+ DL ++++ V+V+G +++LT E++++ L+ + ++++ Sbjct: 125 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K++ Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239 >gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis L2-32] gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis L2-32] Length = 243 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 127/231 (54%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIERLQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+TPV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 69 TRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQQQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLR 222 + I++ +I LRKK + + G K+ IET G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIVIEDENGDKHKVTPLIETKRGIGYMIR 239 >gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 228 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 125/220 (56%), Gaps = 5/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ + + L L+ E + V GE+ + + D +ILD+ L G+ V Sbjct: 5 ILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNNPDLVILDIMLPKKDGWTV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A + P+ +L+ D+V GL GADDY+ KPF+ ELVAR++A++RR+ Sbjct: 65 CREIR-AMSNAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRRTSLA 123 Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q ++ L+VN D+ VEV G R+ LT KE++++ L+ ++E L++++ Sbjct: 124 NQDGNRVLFYPGLTVNYDSHLVEVDGRRVSLTPKEFELLWFLASHPGKVYSREQLLSYVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D + + +D I +LR+KL + + YI TVWGRGY Sbjct: 184 DYDYLGDPRTVDTHIKRLREKLESGV-KQRYIRTVWGRGY 222 >gi|295398526|ref|ZP_06808560.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973249|gb|EFG49042.1| response regulator [Aerococcus viridans ATCC 11563] Length = 255 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 134/247 (54%), Gaps = 29/247 (11%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ ++ L+ E + V + G+ G+EL ++ D IILDL L + G + Sbjct: 3 KVLIVDDEQSILTLLKYSLEKEGYEVIQAEDGQTGLELAMNHQLDFIILDLMLPKMDGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR KI+TP+ +L+ +K+ GL+ GADDY++KPF+ E++AR++AI+RR+ Sbjct: 63 VCKNLRQNKINTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAILRRATY 122 Query: 122 HAQS-----------------------------LIVTGDLSVNLDAKTVEVQGHRIHLTG 152 S +I GD+ ++++ V V+G I +T Sbjct: 123 SVSSVDAENGVEEKHKITLTKDSVGNFKDEDVEIIKAGDIEIHVNDYVVYVRGESIEMTP 182 Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212 KE++++ ++ R N TL++E L L+ E +I+DV + LR+K+ YI Sbjct: 183 KEFELLTYMARRVNRTLSREQLLQKLWRFDYAGETRIVDVHVSHLREKIELDTKNPEYII 242 Query: 213 TVWGRGY 219 TV G GY Sbjct: 243 TVRGFGY 249 >gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 14/232 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+A ++ L +E + V V G ++ DA++LD+ L I G EV Sbjct: 18 ILVVEDEPAIATAVAQRLTAEGWRVEVARDGLSAVDAAARLRPDAVVLDVMLPGIDGLEV 77 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R ++ A TP+ +L+ D + GL GADDY++KPF+ ELVAR++A++RR Sbjct: 78 TRRIQ-ADHPTPILMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRRVERA 136 Query: 123 AQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+++ V GD++++ + V G +HLT E++++ +L+ T LT+E Sbjct: 137 QQAVVTSPADPPLVMGDVTIDRAQRRVHRAGEEVHLTPTEFELLVMLASSPKTVLTRERL 196 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++D D + +D I LR+KL G + I TV G GY A Sbjct: 197 LAEVWDWADASGTRTVDSHIKALRRKL-----GPDLIRTVHGVGYAFEPPAS 243 >gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 221 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 135/224 (60%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD + I+L L+ E + V G ++ + D ++LD+ L ++ GF Sbjct: 4 KVLLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKELPDVVLLDVMLPEMNGFT 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL +R ST PV +L+ +ED+VRGL+SGADDYI KPF+ EEL+AR+ A++RR Sbjct: 64 VLERIR-EDFSTELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVLRR- 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G+++ I+ G++ +NL ++ V+V G + L+ E+ ++++L ++K+ L ++ Sbjct: 122 KGYSEK-ILYGNIEMNLSSREVKVNGEPVELSRTEFDLLKVLLTNAGIVMSKDRLLELVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++V+I LRKKL +A I+TV G GYV +E Sbjct: 181 GTEEWGNPNVVEVYINYLRKKLGSAG---KIIKTVRGVGYVAKE 221 >gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 225 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D++ L + L L E ++V GE+G+E K FD +ILDL L I G + Sbjct: 4 ILIIDDEEMLVKGLRLSLIQEGYSVDYAYDGEEGLEKIKSGNFDLVILDLMLPKIDGLTL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R + P+ +L+ DK+ G++ GADDY++KPFN EL+ARIRA+ RR+ Sbjct: 64 CKEVRSFS-NIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTSP 122 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I GD+++N+ K V+ G I LT KE+ ++ LL+ +K+ ++ ++ Sbjct: 123 FVKKHDIIKIGDITINIPDKIVQKNGKEIDLTNKEFDLLVLLASNPGKLYSKDKLMDLIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++V I KLR+K+ + +I T WG GY ++ Sbjct: 183 GFDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYMK 225 >gi|303238185|ref|ZP_07324721.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302594231|gb|EFL63943.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD +A LK + + G G+E ++ II+DL L D G+E+ Sbjct: 4 VLIIEDDINIAELERDYLKLNGYKADIVHDGMKGLEKAISGIYEVIIVDLMLPDKNGYEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++A+R + P+ ++S S DK+RGL GADDY++KPF+ EL AR+++ + R Sbjct: 64 IKAVR-NRFEIPIIVVSAKSEDIDKIRGLDYGADDYLTKPFSPAELAARVKSHINRYERL 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I L +N + V V G I LT KEY+++ L+ N TKE N Sbjct: 123 KGKNTCSEVINHKGLEINAGSHKVFVNGREIQLTTKEYELLFFLASNPNIVFTKEHIFNT 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I K+RKK+ AG YIET+WG GY Sbjct: 183 IWGDDYYGDTATVPVHIQKIRKKIEKDAGNPQYIETLWGTGY 224 >gi|226330499|ref|ZP_03806017.1| hypothetical protein PROPEN_04417 [Proteus penneri ATCC 35198] gi|225201294|gb|EEG83648.1| hypothetical protein PROPEN_04417 [Proteus penneri ATCC 35198] Length = 224 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL+IED+ L H + + + V D ED E F D I+DLGL D Sbjct: 1 MRILIIEDNILLRHHLSVQFRDAGHQV---DAAEDAKEADSFIAEGTPDVAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R I+ P+ +L+ S ++KV L +GADDY++KPF+ EE++ARI+A++R Sbjct: 58 DGISLIRRWRENNITLPIMVLTARESWQEKVSALNAGADDYVTKPFHFEEIIARIQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A + ++L K + G +I LT EY ++E L +N ++K+ + Sbjct: 118 RNMGIASQTLAIEPFELDLSRKEFMISGEQIKLTAFEYTILETLMRNQNKVVSKDALMRQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ + + TV G+GY Sbjct: 178 LYPDAELKESHTIDVLMGRLRKKILEKYPD-DVVVTVRGQGY 218 >gi|196033103|ref|ZP_03100516.1| DNA-binding response regulator [Bacillus cereus W] gi|195994532|gb|EDX58487.1| DNA-binding response regulator [Bacillus cereus W] Length = 225 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQNETTFFQFKDLFVDASSNIVKKAGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 225 >gi|154500437|ref|ZP_02038475.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC 29799] gi|150270789|gb|EDM98081.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L I L+ E + V G + E +D +ILDL L + G Sbjct: 1 MKILVVEDERQLCDDIAEDLELERYTVERCYDGLEAWERILVESYDLVILDLNLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR++R K V ILS SS+ ++V GL GADDY++KPF EEL AR+R+++RR+ Sbjct: 61 DILRSVRREKPELRVLILSARSSLANRVEGLDLGADDYLTKPFELEELEARVRSLLRRNF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G L ++ + + + LT KE++++E L L T+++E L H++D Sbjct: 121 VPQSTAVTAGPLVLDTRKREISADSTPLPLTRKEFEILEYLMLHPGKTVSQEELLEHIWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 P + + I LRKKL A G + I T G+GY L Sbjct: 181 TESNPFSHSVRMHISSLRKKLKEAL-GHDPIATKIGQGYYL 220 >gi|53713474|ref|YP_099466.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60681720|ref|YP_211864.1| putative two component system response regulator [Bacteroides fragilis NCTC 9343] gi|253565462|ref|ZP_04842917.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|265763741|ref|ZP_06092309.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|52216339|dbj|BAD48932.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60493154|emb|CAH07935.1| putative two component system response regulator [Bacteroides fragilis NCTC 9343] gi|251945741|gb|EES86148.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|263256349|gb|EEZ27695.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] Length = 224 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ +A IE LK +V V + G+ G EL + FD +ILD+ + + G E Sbjct: 3 KILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWELIRQEAFDLLILDIIMPKMNGLE 62 Query: 62 VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R R TPV +L+ + + ED V+GL SGADDY+ KPF+ +EL ARI+AI+RR R Sbjct: 63 LCRLYRQQYGYLTPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILRRGR 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V DL +N + + + I LT KEY+++E + L++ L ++D Sbjct: 123 EDSVQQLVCDDLVLNCNTRRARRKEVEIELTVKEYRLLEYFMTHQGMVLSRLTLLKDVWD 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV++ LR K+ + K I TV G GY++ Sbjct: 183 KNFDTNTNVVDVYVNYLRGKI-DKEHDKKLIHTVVGSGYIM 222 >gi|297156212|gb|ADI05924.1| two-component regulator CutR [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED + LA S+ +L+ E V V G D +E ++D ++LD L + G Sbjct: 1 MRVLVVEDQRTLADSVARVLRREGMAVDVAYDGADALERTAIVDYDVVVLDRDLPVVHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R L A+ V +L+ ++ ++V GL GADDY+ KPF ELVARIRA+ RR++ Sbjct: 61 QVCRTLMAAEAPARVLMLTASGTVAERVEGLGLGADDYLPKPFAYAELVARIRAVARRTQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++V G+L ++ + G R+ L+ KE+ ++E L N ++ E L+ ++D Sbjct: 121 RATPPVLVHGELRLDPAQRIATRAGARLPLSPKEFAVLEYLLANHNRVVSAEELLDRVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P + + +LR KL G IETV GY Sbjct: 181 EAADPFTTTVKATMNRLRAKL----GDPPLIETVPRAGY 215 >gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22] gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces scabiei 87.22] Length = 241 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 19 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDGLE 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 79 VARRLRAEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 138 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 139 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 198 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ +N Sbjct: 199 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 241 >gi|291302298|ref|YP_003513576.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571518|gb|ADD44483.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 134/221 (60%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ +A+++ LK++ F V V GE G+E +F +DAIILD+ L + G+ Sbjct: 1 MRLLIVEDEQRMANALARGLKADGFAVEVAADGEAGLEAARFGSYDAIILDIMLPKLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR PV +LS D+ GL GADDY++KPF+ L+AR+RA++RR Sbjct: 61 EVIRTLRRENNWVPVLVLSAKDGEYDQSDGLDLGADDYLTKPFSYVVLLARLRALLRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ GDL+++ TV + I L+ +E+ ++E L +TK L+H++ Sbjct: 121 PARPSVLTVGDLTLDPARHTVHREDTEISLSTREFSLLEYLMRNAEQVVTKVTLLDHVWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ V +++V+I LRKK+ + G++ ++TV G GY L Sbjct: 181 ASEDTHVNLVEVYIGYLRKKI-DTPFGRSSLQTVRGAGYRL 220 >gi|134296855|ref|YP_001120590.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134140012|gb|ABO55755.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 243 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVKTGVDADTALSMQSFDLLILDLGLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANERVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 218 >gi|15836925|ref|NP_297613.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|9105147|gb|AAF83133.1|AE003885_4 two-component system, regulatory protein [Xylella fastidiosa 9a5c] Length = 231 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MR+LLIED+ LA +I ++ + D DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLIEDNADLADAIIRRMRRHG---HAVDWQSDGLAAAGVLRYQRFDLVVLDIGLPSL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L LR TPV +L+ +IED+V L GADDY+SKPF+ E AR R ++R Sbjct: 58 DGLQLLSELRQRGDRTPVLMLTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG A ++ G + A + + G I L +EY+++E+L R + K+ N Sbjct: 118 RNRGSASEVVRIGSFEFDNAAHRIRLDGEPIKLPNREYRLLEILIARLGQIVGKDEIGNS 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L++ D I++++ +LR+KL A I TV G GY++ +D E Sbjct: 178 LFNFDDNAGPNAIELYVARLRRKLEAA---PLRIVTVRGAGYLIEPIVEDSGHE 228 >gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] Length = 234 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 130/228 (57%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ L E + V+ GE+ +E + E D IILDL L + G E Sbjct: 3 KILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +A QS + GDL+++ DA V +G +I LT +E++++ L+ +T+E Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ ++ Y+ T G GY LR Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLR 229 >gi|70729347|ref|YP_259084.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] gi|68343646|gb|AAY91252.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] Length = 226 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED H + L FN + G G ++ +ILD+ L G+ Sbjct: 1 MKLLIVEDQPKTGHYLRQGLSEAGFNAELVADGSTGQHQALTGDYALLILDVMLPGRNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A+R A + PV L+ +++D+V GL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 QILQAVRSAGLEMPVLFLTARDAVQDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 AQ + + DL ++L + VE RI LT KE+ ++E+L R+ L K + + ++ Sbjct: 121 AVAQETSLQLADLRLDLIRRRVERGSQRIDLTAKEFALLEMLLRRQGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + +I+V I +LR K+ + K I TV G GYVL E Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDDFPNK-LIHTVRGMGYVLEE 223 >gi|107026106|ref|YP_623617.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692710|ref|YP_838243.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105895480|gb|ABF78644.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116650710|gb|ABK11350.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 224 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL IEDD +A I L++ + + G DG+ +D + LD L D+ G + Sbjct: 4 ILTIEDDPLIADHIAHTLRAAGHQIDIARTGRDGMARAMSANYDVVTLDRMLPDLDGLTI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSRG 121 L +R + TPV ++S MS ++ ++ GL++G DDY+ KPF+ EE+ ARI ++ RR RG Sbjct: 64 LATMRGVGLDTPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRRRPRG 123 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++++ G+L+++L + + + L E +++E + LT+ M ++ Sbjct: 124 ARVETVLRAGELALDLVRRRATLGARELTLLPTESRVLEFMMRNAGRVLTRTMIFEAVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R +P +IDV I +LRKK+ N G I T+ G GY+L Sbjct: 184 CRFDPGTNLIDVHIGRLRKKV-NRPGAAPLIRTIRGSGYML 223 >gi|325924405|ref|ZP_08185939.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325545115|gb|EGD16435.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 233 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED+ LA +I ++ + D DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++R Sbjct: 58 DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG A ++ G + A T+ + G I L +EY++ E+L R + K+ N Sbjct: 118 RNRGQASEVVQIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNG 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ D+ I++++ +LR+KL AG I TV G GY L E Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKL---AGAPLRIVTVRGAGYKLEE 220 >gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4] gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4] Length = 225 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + + LK + F V G + I+ + + DA+ILD+ + + GF+ Sbjct: 1 MLVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKARTFRPDAVILDVMMPVMDGFDA 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ LR PV L+ ++ED+V GL GADDY++KPF+ EE+VAR+R I+RR Sbjct: 61 VKRLRADGCDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRRTGTL 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + + DL ++ D+ V G + L+ E+ ++ L L T L+K L+H+ Sbjct: 121 SAAERSARLTFADLELDEDSHEVYKAGRPVALSPTEFTLLRYLMLNAGTVLSKARILDHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + +++ ++ LRKK+ A I T+ G GYVLRE Sbjct: 181 WDYDFGGDGGVVESYVSYLRKKIDTAE--PRLIHTIRGVGYVLRE 223 >gi|229013739|ref|ZP_04170867.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides DSM 2048] gi|229135371|ref|ZP_04264160.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST196] gi|228648067|gb|EEL04113.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST196] gi|228747408|gb|EEL97283.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides DSM 2048] Length = 239 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 14 ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLEV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 74 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 132 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I GDL ++ TVE +G ++ LT KE+++++L +N TK Sbjct: 133 SAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 193 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 236 >gi|189348733|ref|YP_001941929.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221215703|ref|ZP_03588664.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD1] gi|189338871|dbj|BAG47939.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221164405|gb|EED96890.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD1] Length = 239 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G LS++ A+ V G RI LT +E+ ++ + ++ Sbjct: 126 LARDSRIDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >gi|120403287|ref|YP_953116.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956105|gb|ABM13110.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 255 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D++AL + +++ L+ E + + V + ++ + D ++LD+ L D+ G Sbjct: 30 IRVLLVDDERALTNLVKMALQYEGWEIDVAHDAAEAVDKYRANTPDLLVLDIMLPDMDGL 89 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + TP L+ S+ D+V GL +G DDY++KPF+ EELVAR+R ++RRS Sbjct: 90 GVLARLRESGAYTPTLFLTARDSVADRVTGLTAGGDDYMTKPFSLEELVARLRGLLRRSA 149 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A +SL V GDL+++ ++ V G + LT E++++ LL + L++ L Sbjct: 150 YLAPADDESLSV-GDLTLDAASREVTRAGEPVSLTSTEFELLRLLMRNQRKALSRTDILR 208 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D I+D+++ LRKK+ AG I TV G GY+LR Sbjct: 209 KVWDYDFGGRTSIVDLYVSYLRKKID--AGRDPMIHTVRGVGYMLR 252 >gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium 2_1_46FAA] Length = 233 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 11/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GE+ + Y+ + I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTMMVHDGEEALTTFDSYQPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK +TP+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIR-AKSNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLRRYQP 124 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q + +V + +NL +V V + + KE +++ L+ N T+E Sbjct: 125 AKQEIPVADKGKCVVYPGIEINLTNYSVTVDDLPVEMPPKELELLYFLAASPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR K+ + + TVWG GY Sbjct: 185 LLDQIWGYDYMGDTRTVDVHIKRLRAKIKDHPTWS--LGTVWGIGY 228 >gi|330810260|ref|YP_004354722.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378368|gb|AEA69718.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 233 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD AL+ I L+ + V V G+ E + D +ILDL L + G +V Sbjct: 4 ILLVEDDTALSELIASYLERNGYQVSVLSRGDHVRERARVDPPDLVILDLMLPGLDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121 R LR + P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RRS Sbjct: 64 CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLT 123 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q++ IV G+L ++L +TV +G + L+ EY ++ +L+ L+++ L L Sbjct: 124 EPQTVNDRIVMGNLCIDLSERTVTWRGQAVELSSGEYNLLVVLARHSGEVLSRDQILQRL 183 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G D + +DV I KLR+K + A I+TVWG+GY+ Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDNADEARKIKTVWGKGYLF 226 >gi|315123018|ref|YP_004065024.1| response regulator [Pseudoalteromonas sp. SM9913] gi|315016778|gb|ADT70115.1| response regulator [Pseudoalteromonas sp. SM9913] Length = 219 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD +A + L+ E ++V + + ++ E + +ILDLGL D G Sbjct: 1 MHLLLVEDDHLVAQGLCRSLRQEGYSVEHSATVKHALQCLGSGEIELVILDLGLPDGDGS 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ ++ K PV IL+ SSI+DKV+GL GADDY++KPF EL AR+R RR Sbjct: 61 QILKHIKAQKKVIPVVILTARSSIDDKVQGLDMGADDYLAKPFEPAELFARLRVASRRVN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SL+ GD++++ A +V + + L KEY +++ L + +K+ N LY Sbjct: 121 QAQSSLLQCGDVTMDTSAHSVTLNDELLSLPRKEYMLLKALLENQGRVQSKQQLENKLYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V I LRKK + ++I+T+ G GYV+ Sbjct: 181 WGEEVGSNTIEVHIHHLRKKFPS-----DFIKTLRGIGYVV 216 >gi|310779946|ref|YP_003968278.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749269|gb|ADO83930.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 222 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + ++ L + V V GED I L +D +ILD+ + I G Sbjct: 1 MKILVVEDEQNIMTYLKKGLTEAGYKVDVAGNGEDAIYLASINNYDLVILDVMIPKINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR K + +LS ++DKV GL +GADDY++KPF EL+ARIRA++RR+ Sbjct: 61 EVCRILRREKNPAYIILLSAKDQVQDKVEGLDAGADDYLTKPFVFAELLARIRAVLRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++I L+VNL + V+ G I LT KE+ ++E KN LT+ M +++ Sbjct: 121 EDKENIIEAKGLTVNLLNREVKRGGKDIELTLKEFSLLEYFIRNKNLVLTRTMIAEKVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++DV+I LRKK+ I TV G GY+L+ Sbjct: 181 IDFLTDTNVVDVYINHLRKKID-KDFDDKLIYTVRGVGYILK 221 >gi|229019758|ref|ZP_04176562.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1273] gi|229025985|ref|ZP_04182372.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1272] gi|228735316|gb|EEL85924.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1272] gi|228741540|gb|EEL91736.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1273] Length = 241 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 16 ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 76 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 134 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I GDL ++ TVE +G ++ LT KE+++++L +N TK Sbjct: 135 SAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 195 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 238 >gi|182679189|ref|YP_001833335.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635072|gb|ACB95846.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 235 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 130/229 (56%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK L + L + V GE+G L +DA++LDLGL G Sbjct: 1 MRILVVEDDKDLNRQLTAALSQAGYAVDHAFDGEEGWFLGDTEPYDAVVLDLGLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A+ S PV IL+ DKV G+ +GADDY++KPF+ EE++AR+RA++RRS Sbjct: 61 SVLKEWRKAERSMPVLILTARDRWSDKVEGIDAGADDYVAKPFHMEEVLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +V G + ++ + V V+ + LT EY+++ + L +++ + HLYD Sbjct: 121 GRASDELVCGPVKLDTRSGAVTVEDVPVKLTSHEYRLLAYMMLHAGRVISRSEIIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I+VF+ +LRKKL G + IET+ G GY R A ET Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL-----GFDIIETLRGLGY--RVPAAGET 222 >gi|171317083|ref|ZP_02906287.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171097784|gb|EDT42608.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 225 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD+ +AH + LK F V G +G+ ++D + LD L I G + Sbjct: 4 VLIIEDDEIVAHDMATHLKDRGFGVEWVPDGREGLARALSRQYDVVTLDRMLPGIDGLTI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + TPV ++S +S ++++V GL++G DDY++KPF+ EEL AR+ ++RR + Sbjct: 64 VTTMRSVGVRTPVLMVSALSDVDNRVGGLRAGGDDYLTKPFDPEELTARVEVLLRRRQPA 123 Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + T G L ++L + V G I L E +++E + + T+T+ M ++ Sbjct: 124 SVQVATTLQVGPLELDLITRCVRRDGREIGLLPTECRVLEFMMRHAHQTITRSMMFEAVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R +P +IDV + +LR K+ + G I+TV G GY L Sbjct: 184 GYRFDPGTNVIDVHMRRLRAKI-DPTGVTPMIQTVRGSGYRL 224 >gi|134287719|ref|YP_001109885.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134132369|gb|ABO60104.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 221 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +I+ LK ++ G+ + +D ++LDLGL G Sbjct: 1 MRVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL ++R P+ I++ ++D++RGL GADDY+SKPF EL+AR+RA++RR Sbjct: 61 EVLASIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV---QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A ++ G V LD T E G ++ L+ +E+ +++ L +R L++ + Sbjct: 121 GTAAPVLSNG--VVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDR 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +Y +E E ++ I LR+KL G I+ V G G+++ + A Sbjct: 179 IYGWGEEVESNAVEYLIHALRRKL-----GGEVIKNVRGVGWMVSKGA 221 >gi|282882337|ref|ZP_06290965.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B] gi|281297758|gb|EFA90226.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B] Length = 233 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+ EDDK +A+SI L L++E F+V G + IE+ K D II+DL + + G Sbjct: 4 FKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGE 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E ++ LR P+ ILS S DKV GL GADDYI+KPFN EL+AR+ + +RR Sbjct: 64 EAIKKLRDISF-VPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYH 122 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I G++ +N KT V I+LT EY+++E L N + E Sbjct: 123 SYDNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYE 182 Query: 177 HLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 H++ +EP E K + V I ++R+K+ YI+ WG GY +N + Sbjct: 183 HVW---NEPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKR 231 >gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662] gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662] Length = 219 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 137/226 (60%), Gaps = 13/226 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 RIL++ED+ A+++ I++ L + Y D DG E + FD I+LD+ L +I Sbjct: 3 RILIVEDEPAISNLIQMNLAAAG---YCCDCAFDGAEAADRLDQEGFDLILLDIMLPEID 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+E++ +R +I PV L+ ++ EDKV+GL++GADDY++KPF EL+AR+ ++RR Sbjct: 60 GYELMDYIRPLEI--PVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRR 117 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S + GDL +++ A+ V+ QG ++LT KEY+++ LL KN L ++ + Sbjct: 118 CQ-KTESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKI 176 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + +D+ + +LRKK+ G ++ I+TV+ GY L ++ Sbjct: 177 WGSGYMGDSRTVDLHVQRLRKKI----GWEHKIKTVYKVGYRLEDS 218 >gi|163745626|ref|ZP_02152986.1| Two-component transcriptional regulator, winged helix family protein [Oceanibulbus indolifex HEL-45] gi|161382444|gb|EDQ06853.1| Two-component transcriptional regulator, winged helix family protein [Oceanibulbus indolifex HEL-45] Length = 223 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 123/220 (55%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD + I L+ E V V G DG+ ++D +ILD L ++ G Sbjct: 1 MKLLVVEDDTTTSTYIARGLREEGHAVDVVADGRDGLVQATTGQYDVLILDRMLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR A +TPV +L+ M ++ED++ GL +GADDY+ KPF EL AR+ A+ RR + Sbjct: 61 TLLKTLRGAGNATPVLLLTAMGAVEDRIDGLNAGADDYLVKPFAFGELSARVNALARRPQ 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + + G+L+++L ++ V G I L +E+ ++E L RK T+ M L ++ Sbjct: 121 ALEQETTLRAGNLTMDLISRRVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P +++ I +LR K+ I+TV G GY Sbjct: 181 DISFDPMTNVVETHISRLRAKVDRPF-DVELIQTVRGAGY 219 >gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 236 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 129/229 (56%), Gaps = 15/229 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F + + GE+ + + D I+LDL L + G+E Sbjct: 6 KILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAVSSFSPDLILLDLMLPGMDGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K + P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 66 VCREVR-HKSNVPIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLRRFQQ 124 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ ++ DL+VNL +V +G+ + + KE +++ L+ N T+ Sbjct: 125 IPAVVTEPSTPSEKMVEFPDLTVNLTNYSVIYKGNTLEMPPKELELLYFLASSPNQVFTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 E L++++ + + +DV I +LR+K+ G ++ + TVWG GY Sbjct: 185 EQLLDNIWGYEYVGDTRTVDVHIKRLREKI---PGNTHWSLSTVWGIGY 230 >gi|303240403|ref|ZP_07326921.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592130|gb|EFL61860.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 230 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ ++ + + ++LK E + V G G+ + + D IILD+ L DI G E Sbjct: 5 KILIIDDELSILNLVSMVLKREGYEVEQARDGNTGLRFFESFRPDLIILDIMLPDINGNE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R + S P+ +L+ S I DK+ GL+ GADDY++KPF+ EL+ R++A++RR+ Sbjct: 65 VCKMVR-SNSSIPIMMLTAKSDIVDKIVGLELGADDYLTKPFDNRELLVRVKALLRRTGL 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ D+ +NL K + RI LT EYQ++EL + T+E L ++ Sbjct: 124 KDVNPDILSYSDIVINLKEKVLLKNNKRISLTPIEYQLLELFMKNPSRVFTREDLLTRVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D+ I +LRKK+ + + YI T +G GY + Sbjct: 184 GYDYYGDSRTVDISITRLRKKIEDDSKNPKYIVTAYGFGYCFK 226 >gi|225387787|ref|ZP_03757551.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme DSM 15981] gi|225046121|gb|EEG56367.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme DSM 15981] Length = 229 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++++A + L+ F V + + G G+E EFD ILDL L GFE Sbjct: 3 KILIVEDEESIAELEKDYLELSGFEVEIENNGSSGLERALNEEFDLFILDLMLPGTDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICKKIREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + ++ L ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGSGQPSNEIVEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLSFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna ACS-171-V-Col3] gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna BVS033A4] gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna ACS-171-V-Col3] gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna BVS033A4] Length = 229 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+ED+ + ++ L E F + D GE G+EL + + D +LD+ L I GF Sbjct: 3 IKVLLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNKPDVAVLDIMLPGIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR + + +L+ + DK+ GL+ GADDY++KPFN EL+ RI++++RRS Sbjct: 63 EVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSP 122 Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + D + LD ++T G I LT E +I+LL +T++ ++ Sbjct: 123 QKQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELSIIKLLMQNPGKAITRDELMDKA 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + KI+DV + +LR K+ + YI TVWG GY Sbjct: 183 WGEDFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGY 223 >gi|150389552|ref|YP_001319601.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949414|gb|ABR47942.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 234 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I L L+ E + V + G +E + D +ILD+ + + G EV Sbjct: 6 ILVVDDDEDIREIITLYLEKEGYQVILAMDGHQALECAFSFNPDLVILDMMIPGLDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 +ALR +STP+ LS S+ DK GL +G DDY+SKPF+ EL+ARI+A +RR+R Sbjct: 66 CQALR-KNLSTPIIFLSCKSTPSDKSIGLIAGGDDYMSKPFDTMELLARIKAHLRRNRIL 124 Query: 121 -----GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +AQ+ + GDL++NLD +V V G I L+ KE+Q++ LL+ N + E Sbjct: 125 ENSNYSNAQNKRLCYGDLTINLDNHSVVVYGQEIILSPKEFQLLTLLAKNPNRVFSNEQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ + + + V I +RKK+ A I+TV G GY Sbjct: 185 FETLWATESFGDHRTVMVHISNIRKKIERDAKKPALIQTVKGVGY 229 >gi|332663776|ref|YP_004446564.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332590|gb|AEE49691.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 224 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 13/226 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ L+ SI+ L SE++ D + +E Y +D I+LDL L G Sbjct: 1 MKLLIIEDEPELSKSIKEYLSSESYLCEFADTFQQALEKIALYSYDCILLDLMLPGGDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L L+ + V I+S +++EDKV GLQ GADDY+SKPF+ EL ARI A++RR + Sbjct: 61 KILEELKKQQKEEGVIIISAKNALEDKVLGLQLGADDYLSKPFHLSELAARIYAVIRRKQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178 +LI +L ++L AK++ V + + LT KE+ ++ KN + K HL Sbjct: 121 FANSNLIEQNELKIDLLAKSIWVNENLVSLTKKEFDLLLYFVGNKNRVIAKGALAEHLSG 180 Query: 179 -----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D D + I L+KKL++ AG YI+TV+G GY Sbjct: 181 DFADMLDNHD-----FVYAHIKNLKKKLTD-AGCSLYIKTVYGTGY 220 >gi|325521888|gb|EGD00601.1| DNA-binding response regulator [Burkholderia sp. TJI49] Length = 220 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + ++ L+ F V GE + ++ I+LDLGL G Sbjct: 1 MRILLVEDDEQIGSGVQRGLRHSGFAVDWVRDGETASTALRSTQYGLILLDLGLPKQDGS 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR TPV I++ +I D+V GL +GADDY+ KPF EEL+ARIR + RR Sbjct: 61 TVLARLRQRNDPTPVIIVTARDTIGDRVAGLDAGADDYLVKPFALEELLARIRVVSRRQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q++ +G L ++ V + + +T +E+ ++E L R N +T+E LY Sbjct: 121 GSVQTVFQSGTLRLDPAQHRVWLGTEEVPVTAREFAILEELIRRPNGIVTREQLEECLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E E + V I LR+KL G + I TV G GY + E Sbjct: 181 WNEEVESNTVQVHIHHLRQKL-----GTDVIVTVRGIGYRIGE 218 >gi|290958605|ref|YP_003489787.1| two component system reponse regulator [Streptomyces scabiei 87.22] gi|260648131|emb|CBG71239.1| putative two component system reponse regulator [Streptomyces scabiei 87.22] Length = 242 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 124/233 (53%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ +A S+ L F V + G G L +D ++LDLGL D G Sbjct: 1 MRVLLVEDDEPVAESLRRGLLRYGFEVEWVNTG--GAALSYGGPYDVVLLDLGLPDTDGL 58 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V +ALR + P+ ++S S D+V GL+ GADDY+SKPF E++ARIRA++RR + Sbjct: 59 DVCKALR-DRSQVPIIVISARSDETDRVVGLELGADDYVSKPFGVREVIARIRAVMRRVQ 117 Query: 121 GHAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A D L+V+ A V + G + L KEY ++ L+ +++E + Sbjct: 118 PRAADAPAGPDRYGPRLTVDRKAARVHLDGTEVGLAPKEYDLLAFLTEEPGALMSREQIM 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++D K +DV + LR+KL+ A IE V G G+ L N K++ Sbjct: 178 EAVWDANWFGPTKTLDVHVAALRRKLAGAI----TIEAVRGVGFRLIVNEKEK 226 >gi|218508476|ref|ZP_03506354.1| two-component response regulator protein [Rhizobium etli Brasil 5] Length = 199 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/175 (39%), Positives = 105/175 (60%), Gaps = 5/175 (2%) Query: 45 FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104 +DAIILD+G ++ G VL R A + PV IL+ DKV G+ +GADDY++KPF+ Sbjct: 21 YDAIILDIGKPEMDGVTVLEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFH 80 Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164 EE++ARIRA++RR+ GHA S IV G + ++ + V G + LT EY+++ L Sbjct: 81 VEEVLARIRALIRRAAGHASSEIVCGPVRLDTKSSKATVNGTALKLTSHEYRLLSYLMHH 140 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + H+YD + + I+VF+ +LRKK+ G + IETV G GY Sbjct: 141 MGEVVSRTELVEHMYDQDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 190 >gi|170693423|ref|ZP_02884582.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170141578|gb|EDT09747.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 290 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRIL+ EDD LA +++S + Y D + G+E FD +ILDLGL + Sbjct: 24 MRILIAEDDSILADG---LVRSLRQSAYAVDHVKSGVEADTALSMQSFDLLILDLGLPRM 80 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ R Sbjct: 81 SGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTR 140 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +++ G L + + + I L+ +E ++E+L R ++KE ++H Sbjct: 141 RGAGGGPTIVRHGSLGFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDH 200 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + +E I+V++ +LRKK+ + I TV G GY L Sbjct: 201 LCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 241 >gi|126174120|ref|YP_001050269.1| two component transcriptional regulator [Shewanella baltica OS155] gi|217973566|ref|YP_002358317.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304411340|ref|ZP_07392954.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307305338|ref|ZP_07585086.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125997325|gb|ABN61400.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|217498701|gb|ACK46894.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304350195|gb|EFM14599.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911641|gb|EFN42066.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] Length = 219 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI+L+ED++ LA I L L V + + ++ K F AI+LDLGL D G Sbjct: 1 MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNESFSAIVLDLGLPDGNGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+A R +S P +L+ + + K+ L GADDY+ KPF+ EL ARIRAIVRR Sbjct: 61 ELLKAWRQQGVSIPTIVLTANTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + ++ G L ++L+ + V + + L+ +E+Q++ L+ LT+ L L Sbjct: 121 GLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLELAQSAGRVLTRSQ-LEQLTY 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DE I+V I LRKKL+N I+TV G GY L E Sbjct: 180 GWDEVGSNSIEVHIHHLRKKLAN-----ELIKTVRGIGYTLIE 217 >gi|332669831|ref|YP_004452839.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338869|gb|AEE45452.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 213 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 125/215 (58%), Gaps = 6/215 (2%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +++D++ L ++ L +E F V V GE G++L +++DAI+LD+ L G++V+ Sbjct: 1 MVDDERGLTSALHRGLSAEGFAVDVAHDGEAGLQLALEHDYDAIVLDIMLPRRNGYDVVT 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 ALR + TPV +LS D GL GADDY++KPF LVAR+RA++RR Sbjct: 61 ALRAQDVRTPVLLLSAKDGEYDVADGLDVGADDYLTKPFAFVVLVARLRALLRRPPQVRP 120 Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184 +++ GDL ++ A+TV G + LT +E ++E L + + K +H+++G E Sbjct: 121 AVLAVGDLVLDPAARTVTRAGEPVVLTVRELALLEYLMRHADRVVGKVELRDHVWEGTGE 180 Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +V +++V++ LR+KL G++ + TV G GY Sbjct: 181 -DVNVVEVYVGYLRRKL-----GRDAVATVRGAGY 209 >gi|126737572|ref|ZP_01753302.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126720965|gb|EBA17669.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 225 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + L + V + G D + ++D +ILD ++ G Sbjct: 1 MRVLLLEDDGEIGKWTIKGLMTAGHVVDWLESGRDALLSATTRDYDVLILDRMTPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR AK+ TP +L+ M +ED+V GL++GADDY+SKPF EL+ARI A+ RR + Sbjct: 61 SVLKTLRAAKVMTPALLLTAMGEVEDRVEGLEAGADDYLSKPFAMTELLARITALSRRRQ 120 Query: 121 GHAQSLIVTGD---LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A + + + L +++ A+ +G I L KE++++E+L K T+ M L Sbjct: 121 GEATTTLTKLEHKGLELDILAQKCSYKGEIIPLNPKEFKLLEVLMRSKGRVQTRAMLLER 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D +P +++ + +LR K+ K I TV G GYV Sbjct: 181 VWDINFDPATSVVETHMSRLRNKVEKPFDLK-LITTVRGAGYVF 223 >gi|254250739|ref|ZP_04944058.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] gi|124879873|gb|EAY67229.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] Length = 225 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ F+V + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEERYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 GVLKRLRETH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETEHLTVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIHTVRGVGYVL 219 >gi|332531744|ref|ZP_08407629.1| copper-sensing two-component system response regulator CpxR [Pseudoalteromonas haloplanktis ANT/505] gi|332038720|gb|EGI75162.1| copper-sensing two-component system response regulator CpxR [Pseudoalteromonas haloplanktis ANT/505] Length = 229 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+I+DD L + L ++ F + GE G++L + ++ I+LD+ L + GF Sbjct: 1 MKLLMIDDDTGLCELLSEYLTAQGFEIQSVHDGEQGLKLAQANDYALILLDVMLPTLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR K+ TPV +L+ D++ GL+ GADDYI KPFN EL+AR++AI RR Sbjct: 61 EVLKQLRQTKL-TPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIE 119 Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H SL ++ ++VNL A+ + G + LTG EY+++ LL ++KE Sbjct: 120 -HINSLNVATTSKLLVNGITVNLAAREASIDGSTLTLTGTEYEILTLLCKNAGEVVSKEQ 178 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R + ID+ + +RKK++ G+ I+T+ G GYV Sbjct: 179 ISEEVLGRRLASFDRSIDMHVSNIRKKIAEHIPGER-IKTMRGTGYVF 225 >gi|291562324|emb|CBL41140.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 225 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+IED++AL +I L+ ++V GE +EL +D ++LDL L G Sbjct: 1 MHLLVIEDERALCETIVRSLRRLAYSVDFCYDGETALELLGVERYDLVLLDLNLPKKDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR T V ILS S +EDKV+GL +GA+DY++KPF+ EL ARIR++ R Sbjct: 61 TVLRTLRQTDRETRVLILSARSEVEDKVQGLDAGANDYLAKPFHLAELEARIRSLTLRQF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ G L+ + ++T V G + LT KE ++E L + + +++E ++H++D Sbjct: 121 TQQDVLLSCGGLTFDTRSRTATVNGQTLTLTRKETGILEYLMVHQGRPVSQEELMDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I V I LRKKL A G + I G GY++ Sbjct: 181 NSVDSFSNSIRVHISALRKKL-RAVLGYDPIRNRIGEGYLM 220 >gi|221065560|ref|ZP_03541665.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220710583|gb|EED65951.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 227 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L + + G DG+ L E+ +ILD+ L + G+ Sbjct: 1 MRILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I+R R Sbjct: 61 QVLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILR--R 118 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 GH + + DL ++L + V G R+ LT KE+ ++ELL R L + + + Sbjct: 119 GHPANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +I+V + +LR K+ K I+TV G GYVL Sbjct: 179 VWDMNFDSDTNVIEVAMRRLRVKIDEGHSIK-LIQTVRGMGYVL 221 >gi|317500294|ref|ZP_07958520.1| transcriptional regulatory protein CutR [Lachnospiraceae bacterium 8_1_57FAA] gi|316898302|gb|EFV20347.1| transcriptional regulatory protein CutR [Lachnospiraceae bacterium 8_1_57FAA] Length = 224 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED++ L +I LK ++V G +++ FD ++LDL L D G Sbjct: 1 MHILVVEDERILCETIARSLKRLAYSVDCCYDGITAMQMLADDNFDLVVLDLNLPDADGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR T V ILS S + DKV GL +GA+DY++KPF+ EEL ARIR++ R Sbjct: 61 TVLRTLRKTDRDTKVLILSARSEVSDKVDGLDAGANDYLAKPFHLEELAARIRSLTLRQF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GD+S + ++ V G + LT KE ++E L + + +++E F+ H++D Sbjct: 121 TQNDVVLTCGDVSFDTKSRKAIVGGEPLPLTRKETGILEYLMVNRGRPISQEEFIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I V I LRKKL + G + I G GYV+ E Sbjct: 181 NSVDNFSNSIRVHISALRKKLRTSL-GYDPIRNRIGEGYVMGE 222 >gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1] gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1] Length = 228 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A IEL LK+EN++V+ ++ + + + D +LD+ + DI GF Sbjct: 1 MNILVVDDEKEIADLIELYLKNENYHVFKFYTAQEALACIEHEKVDLAVLDIMIPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +LR +R ++ PV +L+ DK+ G GADDYI+KPF ELVAR++A +RR Sbjct: 61 TILRKIR-ETLNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRRFT 119 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S + +I L +N + + V + I LT E+ ++ L + T ++ E Sbjct: 120 LYNLSSKQQEDIIDFAGLVINKNTRQVFLNERPISLTPTEFAILWYLCANRGTVISSEQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I LR+K+ +AA YI+TVWG GY + Sbjct: 180 FQEIWGEKYFSSNNTVMVHIRHLREKMKDAAENPKYIKTVWGVGYTI 226 >gi|297565268|ref|YP_003684240.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849717|gb|ADH62732.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 217 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 122/224 (54%), Gaps = 11/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPGF 60 +LL+EDD +L+ ++ L ++ F + E E D I+LD+ L + GF Sbjct: 1 MLLVEDDPSLSQTLLESLAAQGFKPRLATSAEAAWEALWRDPVDLIVLDVMLPEGEEAGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR A P+ L+ S+ D+VRGL+ G DDY++KPF ELVAR+RA+ RR Sbjct: 61 ELAKELREAGFHQPILFLTARESLPDRVRGLEVG-DDYLAKPFALAELVARLRALARR-- 117 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + +V G L V L+ + V +G + LT KEYQ++EL + T+E L ++ Sbjct: 118 GEVRPRVVQAGPLEVALEKREVRYRGQMVRLTAKEYQVLELFVINPGRIFTREEVLERVW 177 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +IDV++ LRKKL + N IETV G GY E Sbjct: 178 GPGFESDSNLIDVYVKNLRKKLYD-----NVIETVRGLGYRFAE 216 >gi|257092800|ref|YP_003166441.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045324|gb|ACV34512.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 220 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + S++ L+ + G+ +D ++LDLGL G Sbjct: 1 MRVLLVEDDPMIGKSVQQGLRQDGHTADWLRDGQQAELALATTPYDILLLDLGLPGRSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + S PV +++ +I D++RGL +GADDY+ KPF+ +EL AR+RA+ RR Sbjct: 61 DVLTRLRRSANSIPVLVITARDAIADRIRGLDAGADDYLVKPFDLDELSARMRAVQRRHA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A+ +I G L +N + + G + L+ +E+ +++ L + L++ LY Sbjct: 121 GRAEPVIENGPLRMNPATHELTLDGTPVTLSAREFALLQALLEQPGVPLSRARLEEKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V+I LR+KL G I+ + G GY++ Sbjct: 181 WGDEIESNAVEVYIHSLRRKL-----GAEQIKNIRGVGYLV 216 >gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] Length = 232 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 130/226 (57%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++DD L + L+ +++ + + GE ++ +D I+LD+ L + G Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R A ++TPV +L+ +ED+V+GL GADDY++KPF+ EL+ARIRA++RR Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRD- 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS+N ++TV + I LT KE+ ++E L + + +++ H++ Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184 Query: 181 GRDEP--EVKIIDVFICKLRKKLSNAAGGKNY---IETVWGRGYVL 221 +P +DV I LRKK+S G Y I T+ G G+++ Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKIS--PPGDKYPPIIRTIRGIGFII 228 >gi|323694714|ref|ZP_08108874.1| KDP operon transcriptional regulatory protein KdpE [Clostridium symbiosum WAL-14673] gi|323501229|gb|EGB17131.1| KDP operon transcriptional regulatory protein KdpE [Clostridium symbiosum WAL-14673] Length = 232 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD A+ + I L++ + GE + + D I+LDLGL D+ G ++ Sbjct: 6 ILVVEDDAAVKNLITTTLETHQYRFRTASTGETAVMEAVSHNPDVILLDLGLPDMDGIDI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R +R + TP+ +LS S DK+ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IRKIR-SWSKTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTFRRLNDA 124 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S S+ G++ ++ A TV + G +HLT EY+++ LL+ LT Sbjct: 125 GDSAAAPASVFTNGEMRLDYAAGTVTMSGQELHLTPIEYKLLCLLAKNVGKVLTHTYITK 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +V + VF+ LRKK+ YI+T G GY Sbjct: 185 KIWGSAWDNDVASLRVFMATLRKKIEPDPSNPQYIQTHIGVGY 227 >gi|154499881|ref|ZP_02037919.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC 29799] gi|150271479|gb|EDM98736.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC 29799] Length = 225 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 117/202 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA ++ ++ + + V G DG++ ++D I+LD+ L + GF Sbjct: 1 MRILIVEDEVRLAEALSQIMAEQRYQTDVVYTGSDGLDYALTSQYDVIVLDVMLPGLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR A STPV +L+ DKV GL GADDY++KPF+ EEL+ARIRA+ RR Sbjct: 61 EVVRRLRSAHNSTPVLMLTAKDETADKVTGLDCGADDYMTKPFDPEELMARIRALTRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL++ L +++ + L KE+++++LL + + K+ + ++ Sbjct: 121 EVLGETMSVADLTLTLSTRSLSRGEKSVRLGFKEFEVMKLLLANSSAVVPKDDIITRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLS 202 + E ++V++ LRKKL+ Sbjct: 181 LESDAEDNNVEVYVSFLRKKLA 202 >gi|28377603|ref|NP_784495.1| response regulator [Lactobacillus plantarum WCFS1] gi|254555781|ref|YP_003062198.1| response regulator [Lactobacillus plantarum JDM1] gi|300767564|ref|ZP_07077474.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179756|ref|YP_003923884.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270436|emb|CAD63338.1| response regulator [Lactobacillus plantarum WCFS1] gi|254044708|gb|ACT61501.1| response regulator [Lactobacillus plantarum JDM1] gi|300494549|gb|EFK29707.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045247|gb|ADN97790.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 242 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ + LK + V G D + L F I+LDL L + G E Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ TP+ I++ + DKV GL+ GADDYI+KPF+ E++ARI+A++RR+ Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 122 HA------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 +++++ GDL ++ + V G I LT KE++++ R+ L Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ LNH++ E +I+D+ I LR+K+ I TV G GY Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGY 234 >gi|294143010|ref|YP_003558988.1| DNA-binding response regulator [Shewanella violacea DSS12] gi|293329479|dbj|BAJ04210.1| DNA-binding response regulator [Shewanella violacea DSS12] Length = 225 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 M+ILL+EDD +IE ++K + N+ G G+ L ++D +ILD L + Sbjct: 1 MKILLVEDDTT---TIEYVVKGFVEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L ALR TPV ILS + ++++V+GL++G DDY++KPF EL+ R ++ Sbjct: 58 DGLKLLAALRATGSQTPVLILSALGHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLML 117 Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R ++ + G+L + L + V + G+ + L KE+Q+++ L N +++ + Sbjct: 118 RGLAKPTETELSVGNLLMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D +P +IDV I KLR+K G+ IETV G GY LRE Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGFGE-LIETVRGAGYRLREG 224 >gi|291521712|emb|CBK80005.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 229 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+A + L+ F+V + G+ G++ +F+ IILDL L ++ GFE Sbjct: 3 KILIVEDEVAIAELEKDYLELSGFDVVMQHTGDAGLKAALNEDFNLIILDLMLPNVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKKVREKK-NTPIIMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S A +I + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LVGSGVKANEIIEIRGIKIDKTARRVYVNGEEKAFTTKEFDLLTFLAENPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 NKIWDMESIGDIATVTVHIKKIREKIEFNTSKPQYIETIWGVGYRFK 228 >gi|257887434|ref|ZP_05667087.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257823488|gb|EEV50420.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 224 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 136/225 (60%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKS--ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 +++L+IEDDK L+++I+ +L + E VY G +G+ + +D ILDL + ++ Sbjct: 2 IKLLVIEDDKVLSNNIKEILTTIGEITQVYN---GSEGLFELESGVYDLAILDLMMPEMN 58 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+EVL LR KI TPV IL+ S+EDK+ G + GADDY++KPF +EEL+ R++A+++R Sbjct: 59 GYEVLAKLRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKR 118 Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G ++++ D+S +L + V + + + GKE++++ K LTKE + Sbjct: 119 SLGLFDENILKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDR 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +++V++ LRK L + K I+T+ GY+L+ Sbjct: 179 IWGFDSDTTITVVEVYMSNLRKHLRSTGLDKE-IKTLRNVGYILQ 222 >gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] Length = 226 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 133/224 (59%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + MLK E + +V G +GI+ + D ++LD+ L + G + Sbjct: 3 RILIVEDEESYSEPLAYMLKKEGYEAFVAATGPEGIDTFERGGADLVLLDVMLPGMSGVD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ++ S P+ +L+ S DKV GL+ GADDY++KP++ EL+ARI+A++RR RG Sbjct: 63 VCRELR-SRSSVPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVLRR-RG 120 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A++ +V G ++++++ V V G + + KE++++E+L + LT+ ++ Sbjct: 121 EAEAGESDELVVGRVAMDVERHVVTVGGKGVAMPLKEFELLEMLMRNEGRVLTRMQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + K +DV I +LR K+ G +I TV G GY L Sbjct: 181 VWGSDYVGDTKTLDVHIKRLRAKIEPDPGLPQHILTVRGLGYKL 224 >gi|229062220|ref|ZP_04199542.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH603] gi|228717048|gb|EEL68727.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH603] Length = 239 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 14 ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLEV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 74 VRIIR-EKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 132 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I GDL ++ TVE +G ++ LT KE+++++L +N TK Sbjct: 133 SAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 193 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 236 >gi|218132752|ref|ZP_03461556.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC 43243] gi|217992478|gb|EEC58481.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC 43243] Length = 238 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++++A + L+ F V V GE G+ L F+ IILDL L + GFE Sbjct: 12 KVLIVEDEESIAELEKDYLELSGFEVTVAKDGESGLNLALSQNFNMIILDLMLPGVDGFE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ I+S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 72 ICRQVREQK-NTPIIIVSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYQS 130 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +R + + + G + ++ A+ V V G T KE+ ++ L+ N TK+ Sbjct: 131 LTSGARSNNDIIEIRG-IKIDKTARRVFVNGEEKAFTTKEFDLLTFLAQNPNHVYTKDEL 189 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 190 FKEIWDMESIGDIATVTVHIKKIREKIEADTSNPQYIETIWGVGYRFK 237 >gi|210610307|ref|ZP_03288336.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787] gi|210152537|gb|EEA83543.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787] Length = 229 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A + L+ F V V + GE G++ ++D ILDL L + GFE Sbjct: 3 KILIVEDEEAIADLEKDYLELSGFEVEVANDGETGLKKALENDYDLFILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICRQVRDEK-NTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYDR 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V V G T KE+ ++ L+ N TK+ Sbjct: 122 LIGSAAEENKVIEIRGLKIDTTARRVWVNGEEKPFTTKEFDLLTFLASHPNHVYTKDELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRFK 228 >gi|167835609|ref|ZP_02462492.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 220 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MRILL+EDD+ +A + LK++ V D +DG +A L L +P Sbjct: 1 MRILLVEDDRMIAEGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKR 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLR LR ++ PV IL+ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGIDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G ++SLI G L+++ + V + G + L+ +E+ ++E L R L+K Sbjct: 118 RQSGRSESLIRHGTLTLDPASHQVTLGGAPVALSAREFALLEALLARPGAVLSKSQLEEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +Y +E ++V+I LRKKL G + I V G GY++ + A Sbjct: 178 MYGWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 220 >gi|162451560|ref|YP_001613927.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161162142|emb|CAN93447.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 256 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED++ +A + L E V+V + ++D +++D L D G Sbjct: 34 MRILVIEDERKIAGFLRRGLAEEGHQVHVEEDLAGARRALAQGDYDLLLVDRALPDGDGL 93 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR +TP L+ + ++V GL GADDY+ KPF+ EEL+ARI A+ RR+ Sbjct: 94 DLIRELRRGGAATPAICLTARDRVGERVEGLHGGADDYLPKPFSFEELLARIAAVSRRA- 152 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ + V DL ++L A VE G IHLT KE+ ++ L+ L++ L ++D Sbjct: 153 GRSERVEVA-DLLIDLAAHRVERAGREIHLTAKEFALLRALAESAGRVLSRTRLLERVWD 211 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +P ++DV I LR K+ + I TV G GYVL E + Sbjct: 212 VGHDPGTNVVDVAISALRAKVDRGF-ARPLIHTVRGVGYVLEERPR 256 >gi|302521422|ref|ZP_07273764.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|333024929|ref|ZP_08452993.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|302430317|gb|EFL02133.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|332744781|gb|EGJ75222.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 229 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ PV +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIR-AESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGY 224 >gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 245 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E ++ V G D ++ Y D ++LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATAYRPDLVVLDIQMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R +R A +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL AR+RA++RRS Sbjct: 72 AARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSY 131 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + DL ++L + V G + LT E+ ++E+ LT+E Sbjct: 132 AAAAGAAAADDDEALTFADLRMDLATREVTRAGRPVELTRTEFTLLEMFMAHPRQVLTRE 191 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ + Sbjct: 192 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 245 >gi|293553530|ref|ZP_06674158.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1039] gi|291602407|gb|EFF32631.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1039] Length = 224 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 135/223 (60%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L++EDDK L+++I+ +L + V D G +G+ + +D ILDL + ++ G+ Sbjct: 2 IKLLVVEDDKVLSNNIKEILAAIGEITQVYD-GSEGLFELESGVYDLAILDLMMPEMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R KI TPV IL+ S+EDK+ G + GADDY++KPF +EEL+ R++A+++RS Sbjct: 61 EVLAKIRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSL 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++++ D+S +L + V + + + GKE++++ K LTKE + ++ Sbjct: 121 GLFDENVLKYKDISYDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+V++ LRK L + K I+T+ GY+L+ Sbjct: 181 GFDSDTTITVIEVYMSNLRKHLRSTGLDKE-IKTLRNVGYILQ 222 >gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] Length = 256 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGFE 61 IL++ED++ L ++E L+ E + G G+E D ++LDL L DI G E Sbjct: 5 ILIVEDEQDLLDTLEFNLQREGYATRRAASGRAGLEAAALEPAPDLVLLDLMLPDISGTE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 V R LR A+ S PV +L+ D+V G + GADDY++KPF+ EL+ R+RAI+RR Sbjct: 65 VCRQLRAAERTRSVPVVMLTARGEEVDRVVGFEVGADDYVTKPFSVRELMLRVRAILRRA 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ A S + GDL V++ V V G+ I LT E++++ L R T++ L+ Sbjct: 125 GTKAEAPSRLQHGDLEVDVAGHRVWVGGNEIRLTALEFRLLATLLSRAGRVQTRDTLLSD 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + +D + +LRKKL +A +YIET+ G GY R++ Sbjct: 185 VWGMHAGLTTRTVDTHVTRLRKKLGDAG---SYIETLRGVGYRFRDS 228 >gi|269219092|ref|ZP_06162946.1| DNA-binding response regulator TrcR [Actinomyces sp. oral taxon 848 str. F0332] gi|269211239|gb|EEZ77579.1| DNA-binding response regulator TrcR [Actinomyces sp. oral taxon 848 str. F0332] Length = 224 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 122/220 (55%), Gaps = 1/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD A++ + L E ++V++ + G IE D ILDLGL D+ G + Sbjct: 3 KMLLVEDDTAISGPLLRALGREGYDVHLAETGRGAIEAMSG-GVDVAILDLGLPDMDGLD 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R R P+ IL+ S D V GL +GADDY++KPF EL+AR+RA++RRS Sbjct: 62 VARHARSQGWIFPILILTARSEEVDMVVGLDAGADDYVTKPFRLAELLARVRAVLRRSEA 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +I DL++++ A V + ++GKEY ++ +L+ +++ + ++D Sbjct: 122 SESDVIRVQDLTIDVPAHRVVRGTTELGVSGKEYDLLVVLARNAGQAVSRADIMRDVWDA 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ K +D+ + LR+KL ++ YI TV G G+ L Sbjct: 182 PEDDASKKLDMHVSWLRRKLGDSVSDPRYISTVRGVGFRL 221 >gi|229132845|ref|ZP_04261690.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228650672|gb|EEL06662.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 232 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L I GF+V Sbjct: 7 ILVLEDEIPIRSFIVLNLKHAGFYVLEASTGEEALQILSEHIVDVALLDVMLPGIDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKAIREENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 EEKTNTITSGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYVWKETIR 232 >gi|261378254|ref|ZP_05982827.1| DNA-binding response regulator [Neisseria cinerea ATCC 14685] gi|10880475|gb|AAG24269.1|AF139614_1 BasR [Neisseria cinerea] gi|269145335|gb|EEZ71753.1| DNA-binding response regulator [Neisseria cinerea ATCC 14685] Length = 222 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 117/223 (52%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A ++ LK + V G +D ++LDLGL G Sbjct: 1 MRVLLVEDDAMIAEAVSANLKDGGYAVDWVKNGAQVAAAAAAQPYDLMLLDLGLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R A + PV I++ + ++ GL GADDYI KPF+ EL AR+RA++RR Sbjct: 61 DVLSEIRAAGCTVPVLIVTARDDLYSRLNGLDGGADDYIVKPFDMAELKARMRAVLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G AQ+ + G LS+N VE+ R + L+ KE+ +++ L R L++ + + Sbjct: 121 GQAQACLSNGALSLNPATYQVEIIAERRQVALSNKEFAVLQALLARPGVILSRSDLEDKI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y E E +D I LRKKL GK I+ V G G+++ Sbjct: 181 YGWGAEVESNAVDFLIHALRKKL-----GKENIQNVRGVGWLV 218 >gi|169335320|ref|ZP_02862513.1| hypothetical protein ANASTE_01732 [Anaerofustis stercorihominis DSM 17244] gi|169258058|gb|EDS72024.1| hypothetical protein ANASTE_01732 [Anaerofustis stercorihominis DSM 17244] Length = 226 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 134/225 (59%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ LA + +L+ G G+ L + +D I+LD+ L +I GF Sbjct: 1 MRVLIIEDEVNLALPLVALLEKNKILADTVADGTSGLMLARKPVYDVIVLDIMLPEIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR +TP+ +L+ + +I+D+V+GL GADDY++KPF+ +EL+ARI+A+ RR Sbjct: 61 TILKTLREEHNNTPILLLTALDNIDDRVKGLNLGADDYLTKPFDTKELIARIKALSRRGS 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + ++ G++S+N++ ++ + LT KE ++E L K+ L+K+ L+ ++ Sbjct: 121 GSITEEVLHIGNVSLNVNNASLSIGDREETLTKKEANLLETLMKNKDNVLSKDYILDKVW 180 Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G D + ++++I LRKKL + A K I T G GY L+E Sbjct: 181 -GIDSYAIDNSVEIYIHYLRKKLGSDADVK--IVTNRGLGYTLKE 222 >gi|168334600|ref|ZP_02692753.1| two component transcriptional regulator, winged helix family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 232 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 132/230 (57%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +++++ED+KA++ I+ L+ E + V V GE+G+E+ D ++LD+ + + G Sbjct: 3 KVVVVEDEKAISDIIKYNLEKEGYEVLVAYDGEEGLEMILTTNPDIVLLDIMMPKMDGLS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K + P+ +L+ + DKV GL+ GADDYI+KPF EL+AR++A +RR Sbjct: 63 VCKLVRKTK-NMPIIMLTAKAEEIDKVVGLELGADDYITKPFGMRELIARVKAQLRRGTS 121 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 H + + IV G+L +NL+ V G I LT +E+++++ L+++K T+E Sbjct: 122 HEEIRIPEPLDENTIVEGNLRINLEKYEVTKSGKIIDLTLREFELLKFLAMQKGKVFTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L ++ +V+ +DV + +LR+K+ + Y+ T G GY R Sbjct: 182 ILLEKVWGFEYFGDVRTVDVTVRRLREKVEDDPAKATYVLTKRGVGYYFR 231 >gi|315639535|ref|ZP_07894677.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315484685|gb|EFU75139.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 228 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 131/227 (57%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+K LA +EL LK E + V G G++ E+DAI+LDL L ++ G E Sbjct: 3 RVLIIEDEKNLARFVELELKHEGYTTDVHYNGRTGLDAALNNEWDAILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115 V R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA I Sbjct: 63 VCRRIRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDI 121 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I DL++ + + V I LT +EY+++ L N L +++ L Sbjct: 122 ESDKNISKQTTITYRDLTIEKENRIVRRGSEVIELTKREYELLLTLMESVNVVLARDVLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ E E ++DV+I LR K+ + G ++YI+TV G GYV+R Sbjct: 182 NKVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227 >gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 230 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A + L+ F V V + GE G++ EFD IILDL L + GFE Sbjct: 4 RILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKKGLEGEFDLIILDLMLPGVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 64 ICRQIRSQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V V G T KE+ ++ L+ N +KE Sbjct: 123 LIGSNVEQNEVIEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYSKEELF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 183 REIWDMESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229 >gi|257069251|ref|YP_003155506.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560069|gb|ACU85916.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 231 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 R+LL+EDD A+A + L E + V G D + + E D +ILDLGL D+ G Sbjct: 3 RLLLVEDDSAIAEPLSRALDREGYTVTRASRGMDALGIAAGAESIDLVILDLGLPDLDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ IL+ + D V GL +GADDY++KPF EL ARIRA++RRS+ Sbjct: 63 EVARRLRKGGLECPILILTARADEVDAVVGLDAGADDYVTKPFRLGELQARIRALMRRSQ 122 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S V G +++++ A+ G + L+ KEY ++ +L + +T++ + Sbjct: 123 ATEESGDSYDVNG-VTLDVSARRAYADGEELSLSAKEYDLLTVLVRESGSVVTRDDLMRE 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K +D+ I LR+KL + A I TV G G+ Sbjct: 182 VWGAEWWGSTKTLDMHISWLRRKLGDDATDPRRITTVRGVGF 223 >gi|218549147|ref|YP_002382938.1| DNA-binding transcriptional regulator PhoP [Escherichia fergusonii ATCC 35469] gi|218356688|emb|CAQ89315.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia fergusonii ATCC 35469] gi|324113921|gb|EGC07895.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] gi|325497568|gb|EGC95427.1| DNA-binding transcriptional regulator PhoP [Escherichia fergusonii ECD227] Length = 223 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E F +E D I+DLGL D Sbjct: 1 MRVLVVEDNPLLRHHLKVQLQDAGHQV---DDAEDAKEADYFLNEHEPDIAIIDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R IS PV +L+ +DKV L +GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSNDISLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVIARMQALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINNEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPDEVITTVRGQGYLF 220 >gi|88703724|ref|ZP_01101440.1| heavy metal response regulator [Congregibacter litoralis KT71] gi|88702438|gb|EAQ99541.1| heavy metal response regulator [Congregibacter litoralis KT71] Length = 230 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ ++ L F V + G DG L FD ++LD+ L D+ G+ Sbjct: 1 MRLLVVEDEIKTGDYVQQGLTEAGFLVTLARNGLDGHHLAMTETFDLLVLDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++LR A TPV L+ S++D+V+GL+ GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 RIVQSLREAGRQTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRST 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I DL+++L G +I+L+ KE+ ++ELL R+ L + + + ++ Sbjct: 121 VPVMTDQIKVADLTLDLPRHRATRAGRKINLSHKEFCLLELLVRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I TV G GY L Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFEPK-LIHTVRGMGYKL 221 >gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 226 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 130/223 (58%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ +A +EL L E + V G G+EL + FD I+LD+ L + G EV Sbjct: 5 ILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETGRFDLILLDVMLPKLNGTEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R + P+ +L+ S+ DKV GL SGA+DYI+KPF EEL+ARIR +R + Sbjct: 65 LRRIRRTS-AVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAPL 123 Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + +++ L ++ D +TV ++G + LT +E+ ++ L K L++E L +++ Sbjct: 124 SSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWGF 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +DV+I LR K+ K +I TV G GYV++++ Sbjct: 184 DFAGDTNAVDVYIRFLRGKIDEVFNVK-FIHTVRGVGYVIKDD 225 >gi|332639012|ref|ZP_08417875.1| two-component response regulator [Weissella cibaria KACC 11862] Length = 229 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ +K+E + + G + + + + IILD+ + D+ G Sbjct: 1 MKILIVDDDHEIAELLEIYVKNEGYEPVIASDGREAMTKIRTNPDIGLIILDIMMPDMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+RA++RR+ Sbjct: 61 TEVLKEVRKDN-PVPILMLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRA 119 Query: 120 R-GHAQS---LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G AQ+ ++ G L++N D+ V+ G ++LT E+ ++ LL+ N + + Sbjct: 120 QNGMAQATPEVLDIGPLTINKDSHEVKTADGVEVNLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR KL A GG ++TVWG GY Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKLEAATGGNQVVQTVWGVGY 224 >gi|170780989|ref|YP_001709321.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155557|emb|CAQ00673.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 269 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ +L +++ L+ E + + + G + + ++ DA++LD+ L D+ G Sbjct: 43 IRVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGL 102 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +VL LR PV L+ S++D++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 103 QVLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRST 162 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I GDL+++ D+ V G I LT E++++ L L+K L+ Sbjct: 163 LVVSDTVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILD 222 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+K+ AG I TV G GY+L+ Sbjct: 223 RVWSYDFGGKSSVVEIYISYLRRKID--AGRNPMIHTVRGSGYMLK 266 >gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] Length = 238 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 133/235 (56%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+++++ ++ L+ F V + GE+G + D I+LDL L + G E Sbjct: 4 KLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQI 123 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ I+ GDL + D ++ LT KE++++ L+ K LT++ Sbjct: 124 IAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR+K+ + YI+T+ G GY L E DE Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLREKIEHNTRKPVYIKTIRGLGYKLEEPKVDE 238 >gi|225848943|ref|YP_002729107.1| transcriptional activator protein IrlR [Sulfurihydrogenibium azorense Az-Fu1] gi|225643812|gb|ACN98862.1| transcriptional activator protein IrlR [Sulfurihydrogenibium azorense Az-Fu1] Length = 219 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 9/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 M++LL+ED+ L S++ +L+ N Y+ D D E F + +D IILD+ L DI Sbjct: 1 MKVLLVEDNIGLNASLKEILE---LNGYIVDGAFDADEALNFLQNSFYDVIILDVMLPDI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF +L+ +R I TPV +L+ + DKV+GL+ GADDYI+KPF EEL+ARI+A+ R Sbjct: 58 DGFTLLKLIREKGIKTPVIMLTAKDQLRDKVKGLELGADDYITKPFEVEELLARIKAVAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS ++ DL V+L ++ V+ G I LT K + ++E L + +T EM + Sbjct: 118 RSSVEKSDVVKIDDLEVDLSSRKVKKDGKEIDLTPKLFCILEQLVRNRGKIVTYEMLYSK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + P + + I LRK + K I+T+ G GY Sbjct: 178 CWEITEVPSNETLRANIKLLRKLIDPE---KKIIKTISGVGY 216 >gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes] Length = 233 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 133/234 (56%), Gaps = 11/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G EV Sbjct: 1 MLVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGIEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 121 AEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233 >gi|33598902|ref|NP_886545.1| putative response regulator protein [Bordetella parapertussis 12822] gi|33603981|ref|NP_891541.1| putative response regulator protein [Bordetella bronchiseptica RB50] gi|33568957|emb|CAE35371.1| putative response regulator protein [Bordetella bronchiseptica RB50] gi|33575032|emb|CAE39698.1| putative response regulator protein [Bordetella parapertussis] Length = 226 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 126/230 (54%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILLIED+ LA + L +V + +DG+ EFDAIILDLGL + Sbjct: 1 MRILLIEDEAELARWLSRSLARHAG--FVVEWADDGLLAERRLAVEEFDAIILDLGLPGM 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L +R TPV +L+ S+ ++V L GADD++ KPF EEL AR+ A++R Sbjct: 59 DGHTLLTRIRARDDRTPVLVLTARDSLAERVGTLHQGADDFLPKPFVLEELEARLTALIR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG + GDL+++ ++ V+G + L+ +E+ ++ L R L K+ L+ Sbjct: 119 RSRGREHPRLTLGDLALDTASQRFTVKGQPLALSPREHAVLRALIQRSGEPLNKQQILDR 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++ I+V + +LRKKL++ I T+ G GY L ENA D Sbjct: 179 IQSSDSDVNLEAIEVLVHRLRKKLADTG---VQIVTMRGMGYCL-ENAVD 224 >gi|53724716|ref|YP_102097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121599835|ref|YP_993967.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|126449442|ref|YP_001079600.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|254203780|ref|ZP_04910140.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|52428139|gb|AAU48732.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121228645|gb|ABM51163.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|126242312|gb|ABO05405.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|147745292|gb|EDK52372.1| DNA-binding response regulator [Burkholderia mallei FMH] Length = 247 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 222 >gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 239 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F+V G + + + + D +LD+ L D+ GF Sbjct: 12 RLLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAEEHNPDLAVLDVMLPDMDGFT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A PV L+ +DKV GL G DDY++KPF+ +E+VARIRA++RR++ Sbjct: 72 VTRRLRAAGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 131 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++I DL ++ DA V G I L+ E++++ L L N L+K L+H++ Sbjct: 132 MDDDDAVIRVDDLELDDDAHEVRRSGTSIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I++ +I LR+K+ I+T G GYVLR K Sbjct: 192 EYDFNGDASIVESYISYLRRKVDTDPDAPALIQTKRGVGYVLRTAEK 238 >gi|94970088|ref|YP_592136.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552138|gb|ABF42062.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 229 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIED++AL ++ L++E ++V V GE+G FD IILD+ L GF+V Sbjct: 5 ILLIEDEEALLTTLTDRLRAEGYSVEVARNGEEGYHHGTRNVFDLIILDIQLPKRNGFDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R A ++TP+ +L+ + DKV GL+ GADDY++KPF EL+ARI A++RRS Sbjct: 65 CRDIRQAGVATPILMLTARGQLVDKVVGLKIGADDYMTKPFEMIELMARIEALLRRSPMR 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GDL V+L V +G + L+ +E+Q++ L + T+++ L ++ Sbjct: 125 PPEKEEVQQFGDLRVDLRGTEVTREGKPVALSAREFQLLRYLLENRGKTVSRGELLKEVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +D+ I LR+K+ ++ TV G GY Sbjct: 185 GYSASTYTRTVDMHIASLRQKIEPDPKQPQWVHTVPGLGY 224 >gi|283784940|ref|YP_003364805.1| two-component response regulator [Citrobacter rodentium ICC168] gi|282948394|emb|CBG87982.1| two-component response regulator [Citrobacter rodentium ICC168] Length = 223 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S PV +L+ +DKV L +GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGLSLIRRWRGNDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVVARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ GHA +I V+L + + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGHASQIISIPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDALMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPDDVITTVRGQGYLF 220 >gi|71908092|ref|YP_285679.1| heavy metal response regulator [Dechloromonas aromatica RCB] gi|71847713|gb|AAZ47209.1| Heavy metal response regulator [Dechloromonas aromatica RCB] Length = 223 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L F + G DG+ E+D +ILD+ L + G+ Sbjct: 1 MKILIVEDEAKTGDYLKQGLSEAGFGADLARNGLDGMHEGLAGEYDLLILDVNLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ALR A PV L+ +ED+V+GL+ GADDY+ KPF EL+AR+R ++RR R Sbjct: 61 QVLKALRAAGRDLPVLFLTARDQVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL +++ + G RI LT KE+ ++EL R+ L + + ++D Sbjct: 121 AKETGNLSIADLELDVLKRRAIRAGQRIDLTAKEFALLELFLRRQGEVLARSFIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ K I T+ G GYV+ Sbjct: 181 MNFDSDTNVVEVAIRRLRAKVDEEFTPK-LIHTLRGMGYVM 220 >gi|163942268|ref|YP_001647152.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864465|gb|ABY45524.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 230 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAIPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I GDL ++ TVE +G ++ LT KE+++++L +N TK Sbjct: 124 SAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 226 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++ L+ IEL LK E + + + G G+E+ + E D I+LD+ L +I G Sbjct: 2 VKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEIDLILLDIMLPEINGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVLR LR P+ +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR +++ Sbjct: 62 EVLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I G LS++ V I LT +E+ ++++L KN LT+ + + Sbjct: 121 VTVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +IDV+I LR K+ +A K I TV G GYV+++ Sbjct: 181 VCGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKD 225 >gi|15890352|ref|NP_356024.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15158564|gb|AAK88809.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 224 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 128/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+K +A ++ L + + T D +EL + + +DAI+LD L D G Sbjct: 1 MRLLLIEDEKEMADALSATLGKQGIVIDHTMRLGDAMELTRQHLYDAILLDRRLPDGEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR A + TP+ +L+ M+ ED++ GL GADDY+ KPF EL+AR+RA++RR Sbjct: 61 AFIPKLRRAGVDTPIILLTAMNEPEDRIAGLDGGADDYLGKPFLVGELLARVRAVLRRPS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + I G + ++ +V + L +E ++ L+ RK ++ + +Y+ Sbjct: 121 GLAPAEIAAGRIVIDPLHLSVTINSLPFDLPRRELLVLVALAKRKGKSVLRSTLEAAVYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E + +D I +LRK+L +A+ G + + + G GY+L+E+A Sbjct: 181 YEEEIQSNALDAHISRLRKRLLDASAGVS-VHNIRGIGYLLKEDA 224 >gi|319796301|ref|YP_004157941.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315598764|gb|ADU39830.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 218 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 7/220 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD+ + S++ L+ ++ +V D GE + ++LDLGL G Sbjct: 1 MRVLLVEDDEMIGRSLKQALEGAGWSADWVRD-GELAQSALGDGGYTCVLLDLGLPKQDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VLR R +TPV +L+ ++D++ L GADDY+ KPF EL+AR+RAIVRR Sbjct: 60 TDVLRRARERGDATPVLVLTARDGLDDRINSLDLGADDYLLKPFEFRELLARMRAIVRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A SL+ +G L ++L + V V G R LT +E+ ++ L R L++E N +Y Sbjct: 120 DGAAHSLVGSGVLQLDLTTREVLVNGAREALTAREFALLHALLERPGAILSREQLENRIY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E IDV I +R+KL G I V G G+ Sbjct: 180 GWGEEVTSNAIDVLIHGMRRKL-----GAESIRNVRGLGW 214 >gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 127/226 (56%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + L+ E + G D + + D +ILD+ + + G E Sbjct: 10 RVLVVDDEAMLADLLSQALRHEGWETATASDGLDALAKAASFHPDVVILDVQMPRMDGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L LR PV L+ ++ D+V GL++GADDY++KPF+ +E+ AR++A++RRS G Sbjct: 70 TLERLRAHDPHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRRS-G 128 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 AQ +++ DL++N+++ V G I LT E++++ L L+K+ L+ Sbjct: 129 RAQQTRSTVLTVADLTLNVESHDVSRGGENITLTNTEFELLRFLMENVGIVLSKQRILDA 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++++I LRKK+ +G I TV G GY++RE Sbjct: 189 VWSYDFGGQVNVVELYISYLRKKID--SGRPALIRTVRGAGYIMRE 232 >gi|167755208|ref|ZP_02427335.1| hypothetical protein CLORAM_00713 [Clostridium ramosum DSM 1402] gi|237734957|ref|ZP_04565438.1| two-component system transcriptional regulator [Mollicutes bacterium D7] gi|167705258|gb|EDS19837.1| hypothetical protein CLORAM_00713 [Clostridium ramosum DSM 1402] gi|229381733|gb|EEO31824.1| two-component system transcriptional regulator [Coprobacillus sp. D7] Length = 227 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 123/219 (56%), Gaps = 3/219 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK + + +++ LK++N+N + + G G+ L D ++LDLGL DI G EV Sbjct: 6 ILIVEDDKTIQNFLKVTLKTQNYNYIIAETGLSGLSLFYANRPDLVLLDLGLPDIEGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R S P+ ++S SS +KV L G+DDY++KPFN EL+ARIRA +R Sbjct: 66 LKQIR-QNSSIPIIVVSARSSETEKVMALDYGSDDYVTKPFNAAELLARIRAALRHCLKE 124 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + L V+ + + V V+ IHLT EY+M+ LL + LT +++ Sbjct: 125 KVSEPIFELDYLKVDFERRHVWVKDQEIHLTPIEYKMLVLLITNRGKVLTHHFIQENVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + VF+ +R+K+ + ++I T G GY Sbjct: 185 YETTDDYQSLRVFMANIRRKIEIDSSSPHFIITEVGVGY 223 >gi|46203088|ref|ZP_00052097.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 232 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 124/229 (54%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + V G DG L + ++D +I+D L + G Sbjct: 1 MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R+LR I+TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR + RR Sbjct: 61 SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRA 120 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 T GDL ++ + V G I L +E++++E L +T+ M L Sbjct: 121 SVPGVTEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVLREN 224 H++D +P+ +IDV + +LR K+ G +N I TV G GYV+R + Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRGKIDR--GFENPMIHTVRGAGYVIRAD 227 >gi|318056745|ref|ZP_07975468.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318080955|ref|ZP_07988287.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length = 225 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ PV +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIR-AESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGY 220 >gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] Length = 238 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 132/235 (56%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+++++ ++ L+ F V + GE+G + D I+LDL L + G E Sbjct: 4 KLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQI 123 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ I+ GDL + D ++ LT KE++++ L+ K LT++ Sbjct: 124 IAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR+K+ YI+T+ G GY L E DE Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLREKIEQNTRKPVYIKTIRGLGYKLEEPKVDE 238 >gi|222082681|ref|YP_002542046.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727360|gb|ACM30449.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 220 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 5/218 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 ++ ED+ + + L+ +++ V GE+ FD +ILDLGL + G VL Sbjct: 1 MIAEDEPTIVSDMRRCLEDQHYIVSTVTDGEEAWYRGDVEHFDLVILDLGLPKLDGLTVL 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R R + PV IL+ DKV G+ +GADDY++KPF EEL+AR+RA++RR+ G + Sbjct: 61 RRWRAGRRGMPVIILTARDGWRDKVDGMDAGADDYLTKPFRMEELLARVRALMRRAAGQS 120 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 ++ G L ++ +TV +G + +T EY+++ L T L++ + +YD Sbjct: 121 SPILSNGVLELDTRQRTVSFRGQPVQVTALEYRLLAYLLHNAGTVLSRSQIADSIYDEET 180 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++V + +LR+K IET G+GY++ Sbjct: 181 ELLSNALEVVVARLRRKFDGTV-----IETRRGQGYLI 213 >gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 239 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G L+++ A+ V G RI LT +E+ ++ + ++ Sbjct: 126 LARDSRLDAGTLDVAG-LAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >gi|163943307|ref|YP_001642537.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865504|gb|ABY46562.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 225 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++E+ + + I L++ FN D GE +EL + D I++D+ L I GF+V Sbjct: 4 ILVVEEGITIRNFIVLIMNRAGFNALAADTGETALELLGKHNVDIILIDVMLPGIDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R + + +LS DKV+GL GADDYI KPF+ EL AR++A++RR +G+ Sbjct: 64 CKSIRENNKNIGIIMLSARVQDRDKVQGLTIGADDYIEKPFSSIELTARVQALLRRVKGN 123 Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ I + +NL + + +G I LT EY ++ L + ++++ LN ++ Sbjct: 124 KENMESIHSEPFRLNLQQERLYKEGVVIDLTPTEYIILRCLMENQGKPISRDELLNEIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + K+I V I +LR+K+ G ++ TVWG+GYV R Sbjct: 184 VNYVVKTKVIGVNIRRLRQKIEPNPSGPQFLRTVWGKGYVWR 225 >gi|300693468|ref|YP_003749441.1| DNA-binding response regulator in two-component regulatory system with bass (basr) [Ralstonia solanacearum PSI07] gi|299075505|emb|CBJ34798.1| Putative DNA-binding response regulator in two-component regulatory system with BasS (basR) [Ralstonia solanacearum PSI07] Length = 221 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD L ++ L+ +N D + FDAI+LDLGL D G Sbjct: 4 ILLIEDDLPLGTALARALRQAGYNTTWVRRLMDAQKWMGSNTFDAIVLDLGLPDGEGHVF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR A+ PV I S ++ ++++GL GADD++ KPF +EL+AR+RA++RR G Sbjct: 64 LEELRAAQSDVPVIIASARDALSERLKGLDEGADDFLVKPFPVDELIARLRAVLRRHAGQ 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G L V K V G+ + LT +EYQ++ L R + +T+E ++ LY Sbjct: 124 STNRWSVGSLVVEPSQKRVTQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREG 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++V I LR KL G+ I+T+ G GY++ N Sbjct: 184 NRVSANALEVVIHHLRGKL-----GEGVIQTIRGVGYMIGGN 220 >gi|212697044|ref|ZP_03305172.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM 7454] gi|212675819|gb|EEB35426.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM 7454] Length = 224 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L +I LK + V G D +E+ + +D IILDL L + G Sbjct: 1 MKILIVEDEQILNDTINKSLKKSGYEVESAFDGIDAMEMIEIESYDLIILDLNLPHMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR T V ILS S I+DKV GL +GA+D++ KPF+ +EL AR+R++ RR+ Sbjct: 61 EILKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S I + + + V V G + LT KE ++E L L + +++E + H++D Sbjct: 121 IQKNSEISFDKIEFDSKNRRVFVDGEELKLTRKEIGILEYLLLNQGRPISQEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNY--IETVWGRGYVLRE 223 + I V I LRKKL N NY IE G GY+LR+ Sbjct: 181 SSVDLLSNSIRVHISALRKKLKNKL---NYDPIENRIGVGYLLRK 222 >gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 226 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++ L+ IEL LK E + + + G G+E+ + E D ++LD+ L +I G Sbjct: 2 VKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKDEADLVLLDIMLPEINGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVLR LR P+ +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR +++ Sbjct: 62 EVLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I G LS++ V I LT +E+ ++++L KN LT+ + + Sbjct: 121 VTVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +IDV+I LR K+ +A K I TV G GYV+++ Sbjct: 181 VCGYDYLGETNVIDVYIRFLRTKIDDAFKAK-IITTVRGVGYVIKD 225 >gi|329935953|ref|ZP_08285754.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304560|gb|EGG48437.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 220 >gi|160946255|ref|ZP_02093466.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270] gi|158447778|gb|EDP24773.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270] Length = 226 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 120/202 (59%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+ LA + +LK ++V V GE+ + + +DA++LD+ + + G Sbjct: 1 MRILICEDEIDLADGLCTILKGNKYSVDVVYDGEEALTYLEAENYDAVVLDIMMPKVDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R S PV +L+ S +EDKV GL GADDY++KPF +EL+AR+RAI RR Sbjct: 61 TVLKTIRENGNSIPVIMLTAKSELEDKVIGLDCGADDYLTKPFEVKELLARLRAITRRKE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G++++N + + LT KE+QM+E+L + ++ + F++ ++ Sbjct: 121 TVTDNVLTFGNITLNRTNFELSSEKGSYKLTNKEFQMLEMLMSTPSNIISADTFMDKIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLS 202 + ++ ++ V+I LRKKL+ Sbjct: 181 YDTDSDISVVWVYISYLRKKLA 202 >gi|187926854|ref|YP_001893199.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|241665183|ref|YP_002983542.1| transcriptional regulator [Ralstonia pickettii 12D] gi|187728608|gb|ACD29772.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240867210|gb|ACS64870.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 221 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD L ++ L+ +N D + F+AI+LDLGL D G Sbjct: 4 ILLIEDDLPLGTALARALRQAGYNATWVRRLVDAQKWITTNTFEAIVLDLGLPDGEGHVF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR A PV I S ++ ++++GL +GADD++ KPF +EL+AR+RA++RR G Sbjct: 64 LEELRAAHRDVPVIIASARDALSERLKGLDAGADDFLVKPFPVDELIARLRAVLRRHAGQ 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G+L V K V G I LT +EYQ++ L R + + +E ++ LY Sbjct: 124 STNQWSVGNLVVEPSQKRVTQDGQVIELTPREYQLLLELVRRAHRWVPRETLMDALYREG 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D ++V I LR+KL N I+T+ G GY++ N Sbjct: 184 DSVSANALEVVIHHLRRKLGN-----ETIQTIRGVGYMIGGN 220 >gi|134296824|ref|YP_001120559.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134139981|gb|ABO55724.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 220 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 129/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+++ F V G+ + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIADGVRKALRADGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR ++ PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++SLI G L+++ + V + G + L+ +E+ ++E L +R L+K +Y Sbjct: 121 GRSESLIRHGPLTLDPASHQVTLDGAPVALSAREFALLEALLVRPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL G + I V G GY++ Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 216 >gi|293570434|ref|ZP_06681489.1| transcriptional regulatory protein CiaR [Enterococcus faecium E980] gi|291609380|gb|EFF38647.1| transcriptional regulatory protein CiaR [Enterococcus faecium E980] Length = 224 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 134/223 (60%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L++EDDK L+++I+ +L + V + GE EL +D ILDL + ++ G+ Sbjct: 2 IKLLVVEDDKVLSNNIKEILTTIGEITQVYNGGEGLFELESGV-YDLAILDLMMPEMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR KI TPV IL+ S+EDK+ G + GADDY++KPF +EEL+ R++A+++RS Sbjct: 61 EVLAKLRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSL 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++++ D+S +L + V + + + GKE++++ K LTKE + ++ Sbjct: 121 GLFDENILKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ LRK L + K I+T+ GY+L+ Sbjct: 181 GFDSDTTITVVEVYMSNLRKHLRSTGLDKE-IKTLRNVGYILQ 222 >gi|115352716|ref|YP_774555.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282704|gb|ABI88221.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 220 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MRILL+EDD+ +A + L+++ F V D +DG +A L L +P Sbjct: 1 MRILLVEDDRMIAEGVRKALRADGFAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKR 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLR LR +S PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGIDVLRTLRARGLSLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G ++SLI G L+++ + V + G + L+ +E+ +++ L R L+K Sbjct: 118 RQAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLQALLARPGAVLSKSQLEEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y +E ++V+I LRKKL G + I V G GY++ Sbjct: 178 MYGWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 216 >gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3] Length = 258 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 122/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ALA I ++L+++ F G E+ + + D ++LDL L + G E Sbjct: 38 RILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAKAFEVSQANKPDLVLLDLMLPGMDGIE 97 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R A+ P+ +L+ S D VRGL+SGADDY++KPF ELVAR+RA +R Sbjct: 98 ICRLIR-AESDVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRARLRPGDV 156 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +V G++++++ ++ G +I LT E+ ++ L+ + ++E+ L ++ Sbjct: 157 KPPETLVIGEITIDVAGHSIRRAGEKISLTPLEFDLLAALARKPWQVFSRELLLEQVWGY 216 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++ + +LR K+ + TV G GY Sbjct: 217 RHAADTRLVNAHVQRLRSKIERDPEAPEVVLTVRGVGY 254 >gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis AF2122/97] gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T92] gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T17] gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis CPHL_A] gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis T46] gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG] gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis AF2122/97] gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] Length = 230 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 132/233 (56%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 +RIL+++DD+A+ S+ +S +FN Y +L DG+E DA++LD+ + + Sbjct: 3 VRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRL 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 60 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119 Query: 118 RSRGH--AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R++ A+S+ + DL+++ + V RI LT E+ ++E+L LT+ Sbjct: 120 RTKPEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 179 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 180 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 230 >gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 229 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 127/223 (56%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD+ + + L E + V G +G+ E D ++LD+ + + GFEV Sbjct: 5 ILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVMMPQVDGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R + PV +L+ +E++V+GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 65 CRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKTEQ 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + + DL ++ +++ V G R+ LT KE++++ L L++++ ++ ++ Sbjct: 125 QDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++V+I LR+K + GGK I T+ G GY+LR Sbjct: 185 GYDYSGESNVLEVYIAMLRQK-TEQDGGKRLIRTIRGAGYILR 226 >gi|187927029|ref|YP_001893374.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|187728783|gb|ACD29947.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 244 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 125/242 (51%), Gaps = 17/242 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE----------FDAII 49 MR+LL+EDD + S+ L+ + F + +V D GE + FD ++ Sbjct: 1 MRVLLVEDDDMIGDSVRKGLRHDGFTIDWVRD-GEAALHAVTAPGAGGAEAGGTLFDLML 59 Query: 50 LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109 LDLGL G EV+R LR I P+ IL+ ++ D+V GL +GADDY+ KPF+ +EL Sbjct: 60 LDLGLPKRDGLEVVRELRQRGIVIPILILTARDAVADRVAGLNAGADDYLVKPFDLQELA 119 Query: 110 ARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 AR+ A++RR G A L+ GD+ +N + V G + L+G+E+ ++ L R Sbjct: 120 ARMHALLRRQGGRADPLLRHGDVVLNPVTREVLRDGVPVKLSGREFAVLHALLARPGKVW 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + ++LY +E ++V+I LRKKL G + I+ + G GYV+ Sbjct: 180 SIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHLIQNIRGVGYVIPRETSASP 234 Query: 230 CE 231 E Sbjct: 235 AE 236 >gi|119960910|ref|YP_948727.1| KDP operon transcriptional regulatory [Arthrobacter aurescens TC1] gi|119947769|gb|ABM06680.1| KDP operon transcriptional regulatory [Arthrobacter aurescens TC1] Length = 224 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 118/218 (54%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +A ++++ L++ + G D ++ + ++LDLGL D+ G E+ Sbjct: 4 VLIVEDEARIARAMQVTLQANGYQALTVGTGADALQATAKQPVEIVVLDLGLPDMDGVEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 +R +R S P+ +LS + EDKV L +GADDY++KPF +EL+AR+R RR Sbjct: 64 IRRIR-GWSSMPIIVLSARHASEDKVEALDAGADDYVTKPFGLDELLARLRVASRRVVTE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H + + T D V+L K + G + LT E+ ++ELL K ++++ L ++ Sbjct: 123 HEEPTLATTDFMVDLAGKKIVKDGSEVRLTPTEWNILELLVRNKGKLVSQQQILTQVWGQ 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + + V+I +LR+KL ++ T G GY Sbjct: 183 AYAKETQYLRVYIAQLRRKLERDPAEPRHLHTEAGMGY 220 >gi|152988150|ref|YP_001350819.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7] gi|150963308|gb|ABR85333.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7] Length = 221 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL EDD L I L+ E V +VTD G EFD ++LD+GL G Sbjct: 1 MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTD-GVAAENALVTDEFDLLVLDIGLPRRSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++LR LR TPV +L+ + D+V GL SGADDY++KPF+ +EL AR+RA+ RR+ Sbjct: 60 LDILRNLRHQGQLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRT 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +V G L ++ V + G + L +EY ++ LL L++ LY Sbjct: 120 TGRALPQLVHGALRLDPATHQVTLAGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E I+V + LR+KL N I TV G GY + + A Sbjct: 180 GWSGDVESNAIEVHVHHLRRKLGN-----QLIRTVRGIGYGIDQPAS 221 >gi|226943977|ref|YP_002799050.1| Response regulator, two-component [Azotobacter vinelandii DJ] gi|226718904|gb|ACO78075.1| Response regulator, two-component [Azotobacter vinelandii DJ] Length = 219 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD AL I LK E + V G + FD +LDLGL + G Sbjct: 1 MRILLVEDDAALGEGIRTALKPEGYTVDWLQDGASALHALGCESFDLCVLDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR A PV +L+ + +++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 DVLRRLRAAGNPLPVLVLTARDATSERIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + + ++ ++ V QG I L KE+ ++ L + LT++ LY Sbjct: 121 NRPQPALEYRGIQLDPQSQAVSYQGRDITLARKEFLLLHELLAQPGRVLTRDRLQQALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E E ++V + LR+K I TV G GY++ Sbjct: 181 WSEEVESNALEVHVHHLRRKFF-----PELIRTVRGVGYMV 216 >gi|229172695|ref|ZP_04300252.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228610735|gb|EEK68000.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] Length = 232 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 129/226 (57%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L I GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I++G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKANTIISGPFSLNVIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|220934382|ref|YP_002513281.1| two component heavy metal response transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] gi|219995692|gb|ACL72294.1| two component heavy metal response transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] Length = 226 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + G DG+ L ++D +ILD+ L + G+ Sbjct: 1 MKILIVEDEPKTGEYLRQGLSEAGFVVDLARDGLDGLHLATTGDYDLLILDVMLPRMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+A+R++ PV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R+++RR + Sbjct: 61 ALLQAVRLSGREMPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L + V G RI LT KE+ ++ELL R+ L + + + ++D Sbjct: 121 SKEPETLKAADLEIDLLRRRVTRGGTRIDLTAKEFALLELLVRRQGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+V + +LR K+ K I TV G GYVL Sbjct: 181 MNFDSDTNVIEVAVRRLRAKVDEPFEPK-LIRTVRGMGYVL 220 >gi|238563602|ref|ZP_00438600.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|251766703|ref|ZP_02264739.2| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254208757|ref|ZP_04915105.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|147750633|gb|EDK57702.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|238520363|gb|EEP83824.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|243064967|gb|EES47153.1| DNA-binding response regulator [Burkholderia mallei PRL-20] Length = 273 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 27 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 87 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 147 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 249 >gi|124384287|ref|YP_001028366.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|124292307|gb|ABN01576.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] Length = 250 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 4 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 64 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 124 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 225 >gi|67921796|ref|ZP_00515313.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67856388|gb|EAM51630.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 223 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D+ L + +L E +NV V D G+ G +L +D +ILD L PG Sbjct: 1 MKILLVDDEAELTEPLYHVLSHEGYNVDVADDGQKGYQLALQNTYDLLILDWMLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR +TPV L+ +++D+V GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 SICRELRSRGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRRSP 120 Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + + GDL + D + Q I+L+ KE +++ LT E Sbjct: 121 ALENVATNPLKIGDLELEPDNQVAYRQSRIINLSDKEVKLLTYFMEHPQQLLTHEQIYQF 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L++ ++P ++ I LR+K+ I TV+G+GY Sbjct: 181 LWEDSEKPSSNVLAALIRLLRRKIEEEGP---LIHTVYGKGY 219 >gi|323137186|ref|ZP_08072265.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322397544|gb|EFY00067.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 230 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 132/232 (56%), Gaps = 11/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL+IEDD+ + + ++K+ +V D DG+ ++D +I+D L + Sbjct: 4 MRILIIEDDR---EASDYLVKAFREQGHVADHAADGLSGYASASEGDYDVLIVDRMLPKM 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ +LR K+ TP ILS + ++D+V+GL++G DDY+ KP++ EL+AR+ A+ R Sbjct: 61 DGLSLISSLREQKVETPALILSALGQVDDRVKGLRAGGDDYLPKPYSFSELLARVEALAR 120 Query: 118 RSRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R G ++ GDL ++ + V V G I L +E++++E L +T+ M L Sbjct: 121 RRVGPRGEETHYRVGDLELDRLSHKVTVGGQEIALQPREFRLLEYLMKNAGQVVTRTMLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVLRENAK 226 +++D +P+ +IDV I +LR K+ G +N + T+ G GY++RE + Sbjct: 181 ENVWDYHFDPQTNVIDVHISRLRAKIDK--GRENPLLHTIRGAGYMIREGTR 230 >gi|229158690|ref|ZP_04286748.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228624674|gb|EEK81443.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 222 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I L + +G+ + ++D IILD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSGLTEAGHFILQLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R+ K+ TP+ I++ S ED V GLQ+GADDYI KPF KEELVAR++AI+RRS + Sbjct: 61 CRQIRLVKM-TPIIIVTDNISSEDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCN 119 Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ I DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 222 >gi|50954116|ref|YP_061404.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950598|gb|AAT88299.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 240 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD + ++ L +E ++V + G D + + + A +D+ L + GF Sbjct: 1 MKLLVVEDDPDMRGLVQRGLAAEGYDVTLMTNGVDALIALRDDTYSAAAIDVMLPGMSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R +R + + P+ +L+ +IED+V GL SGADDY++KPF EL AR+RA++RR Sbjct: 61 ELCRHIRDSGTAMPILLLTARDAIEDRVHGLDSGADDYLTKPFAFAELAARVRALLRREP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I+ G L+++ V GH + L+ +E+ ++ L + + TL++ L ++ Sbjct: 121 TGMRPQIIVGRLTIDSHEHQTLVSGHEMPLSRREFTLLRLFATNPDKTLSRADILESVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +ID ++ LRKKL A G + + T GRGY L Sbjct: 181 TTENIGTNVIDQYVSYLRKKLDVAGAGLSIV-TERGRGYRL 220 >gi|229175245|ref|ZP_04302760.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus MM3] gi|228608077|gb|EEK65384.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus MM3] Length = 230 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 14/228 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G++ FD +ILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVQAFFKSSFDLVILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE----M 173 + + +I GDL+++ TVE + LT KE+++++L +N TK + Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNEKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N Y G D +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDD----NVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|297198420|ref|ZP_06915817.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147085|gb|EDY60144.2| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 246 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 127/227 (55%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++DD LA + L+ E + + G + + DA++LD+ L D GF Sbjct: 19 LRVLVVDDDPDLAEVLSGALRYEGWQIRTAGDGASAVAAARELLPDAVVLDVMLPDTDGF 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRAL K V L+ ++ED+++G+ +G DDY++KPF+ EE+VAR+R ++RR+ Sbjct: 79 AVLRALHSVKADVCVLFLTARDTVEDRIKGITAGGDDYVTKPFSLEEVVARLRGLLRRA- 137 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A+ L + GDL ++ DA+ V G I L+ E++++ L L+K L Sbjct: 138 GLARQLDEGPRLTVGDLVMDEDAREVTRGGELIELSPTEFELLRFLMRNPRRVLSKAQIL 197 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ +++++I LRKK+ AG + I TV G GYV++ Sbjct: 198 DRVWSYDFGGRAHVVELYISYLRKKVD--AGREPLIHTVRGAGYVIK 242 >gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes] gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes] gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes] gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes] gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes] gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes] gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes] gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes] gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes] gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes] gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes] gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes] gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes] gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes] gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes] gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes] gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes] gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes] gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes] gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes] Length = 233 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 133/234 (56%), Gaps = 11/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G EV Sbjct: 1 MLVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 121 AEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233 >gi|118479688|ref|YP_896839.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196044910|ref|ZP_03112144.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866511|ref|YP_002751889.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|118418913|gb|ABK87332.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196024398|gb|EDX63071.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225790658|gb|ACO30875.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 230 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TV G + LT KE+++++L +N TK Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVGKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 235 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ + + L L+ F V + G + +E + D ++LD+ L I G+ Sbjct: 1 MRILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 V R LR + PV +L+ + D+V GL++GADDY+ KPF +EEL+ARIRA++RR+ Sbjct: 61 AVCRILR-RESDVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTP 119 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G ++ G L +++ A+ G R++LT KE+ ++ LL+ L + + Sbjct: 120 KVEGRPADRVIVGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIER 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +V+ +D + LR KL A ++ IETV GY L Sbjct: 180 VWGWDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRL 223 >gi|307308836|ref|ZP_07588524.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|306900641|gb|EFN31253.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 225 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++AL + +L+ + V V G + FD +ILDL L ++ G Sbjct: 1 MRILLVEDNRALTEGLSTLLRGSGYAVDVVSDGASAHAVAAAESFDLVILDLNLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R + V IL+ + E++V+GL GADDY+ KPF+ E AR+R ++RR Sbjct: 61 DVLRAMRARQNRAAVLILTARGTPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S++ G++S++L +++ G I + +E ++ELL +R + K+ + L Sbjct: 121 GLRASVVSYGNVSLDLTSRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D+ I+ ++ +LRK+L+ + T G GY L + A E Sbjct: 181 LDDDLSPNAIEQYVSRLRKRLAPFG---LTVRTARGIGYYLDKTAGPE 225 >gi|300813449|ref|ZP_07093793.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512398|gb|EFK39554.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 233 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+ EDDK +A+SI L L++E F+V G + IE+ K D II+DL + + G Sbjct: 4 FKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGE 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E ++ LR P+ ILS S DKV GL GADDYI+KPFN EL+AR+ + +RR Sbjct: 64 EAIKKLRDISF-VPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYH 122 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I G++ +N KT V I+LT EY+++E L N + E Sbjct: 123 SYDNLASSEIIQIGNVKLNTLEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYE 182 Query: 177 HLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 H++ +EP E K + V I ++R+K+ YI+ WG GY +N + Sbjct: 183 HVW---NEPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKR 231 >gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 238 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE + D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ +I TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + I DL + + QG ++ LT KE++++ L+ K LT++ Sbjct: 124 QDEPVSEVQDENSINIYDLRILPEFYEAYFQGEKLELTPKEFELLVYLARNKGRVLTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E DE Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPAYIKTIRGLGYKLEEPKGDE 238 >gi|118468513|ref|YP_889895.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis str. MC2 155] gi|118169800|gb|ABK70696.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis str. MC2 155] Length = 236 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 118/212 (55%), Gaps = 6/212 (2%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F+V G + + DAI+LD+ + + G V+ ALR P Sbjct: 25 SLERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 84 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL----IVTG 130 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR RG + + I G Sbjct: 85 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR-RGSSATFSSETIQVG 143 Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190 L V++ + V G + LT +E+ ++ +L+ K L++ L ++ + ++ Sbjct: 144 PLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVV 203 Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DVFI LR+KL A G + TV G G+VLR Sbjct: 204 DVFIGYLRRKL-EAGGAPRLLHTVRGVGFVLR 234 >gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396] gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V G DG L FD I++D+ L D+ G+ Sbjct: 1 MKLLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVMDIMLPDLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +L +LR A +TPV L+ S+ D+V+GL+SGADDY+ KPF EL+AR+R I+RR Sbjct: 61 RLLGSLREAGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRRGL 120 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G+ S+ GDL++++ ++ G I LT KE+ ++EL R+ L + + + Sbjct: 121 VPLSGNQLSV---GDLTLDISRRSARRGGSEIQLTTKEFTLLELFVRRQGEVLPRSLIAS 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +IDV + +LR K+ + K I+TV G GY L Sbjct: 178 QVWDMNFDSDTNVIDVAVRRLRMKVDDGHDIK-LIQTVRGMGYRL 221 >gi|117920330|ref|YP_869522.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117612662|gb|ABK48116.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 219 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI+L+ED++ LA I L L V + + K F AI+LDLGL D G Sbjct: 1 MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+A R +S P +L+ + + K+ L GADDY+ KPF+ EL ARIRAIVRR Sbjct: 61 ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G LS++L+ + V + + L+ +E+Q++ L+ LT+ L L Sbjct: 121 GLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLELAQSAGRVLTRNQ-LEQLTY 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DE I+V I LRKKL+N + I+TV G GY L E Sbjct: 180 GWDEVGSNSIEVHIHHLRKKLAN-----DLIKTVRGIGYTLTE 217 >gi|295108640|emb|CBL22593.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++A+A + L+ F V + + G+ G+E E+D IILDL L ++ GF+ Sbjct: 3 KILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALKEEYDLIILDLMLPEVDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K + P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQVRQEK-NIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121 Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ V D + ++ A+ + V G T KE+ ++ L+ N TK Sbjct: 122 LVGSVAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D ++ + V I K+R+K+ YIET+WG GY Sbjct: 182 RQIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGY 225 >gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 231 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 122/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+A+A + ++L+ + + V + G +E D ++LDL L + G E Sbjct: 9 RILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPRLRPDLVLLDLMLPGMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL++GADDY++KPF EELVARI+A VRRS Sbjct: 69 VCRRLR-RESGVPIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKARVRRSEE 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL++++D V I LT E+ ++ L+ + T+++ L ++ Sbjct: 128 PTTEQLTIGDLTIDVDGHEVRRGDQLISLTPLEFDLLTQLARKPWQVFTRDVLLRDVWGY 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + + + TV G GY Sbjct: 188 RHSADTRLVNVHVQRLRSKIEHDPENPSIVVTVRGVGY 225 >gi|261367174|ref|ZP_05980057.1| transcriptional activator protein Irlr [Subdoligranulum variabile DSM 15176] gi|282570768|gb|EFB76303.1| transcriptional activator protein Irlr [Subdoligranulum variabile DSM 15176] Length = 222 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 131/221 (59%), Gaps = 11/221 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ +A IEL L + + GE + ++++ ILD+ L + G+E+ Sbjct: 4 ILIVEDERPIADLIELTLTGAGYTCEQVNDGETAADRIADHDYELAILDIMLPKVDGYEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR + TPV ++ +S++D+VRGL GADDY++KPF ELVAR+ +++RR+ Sbjct: 64 LGYLR--SVGTPVIFVTAKTSLKDRVRGLHEGADDYLTKPFEPLELVARVESVLRRT--- 118 Query: 123 AQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ ++ V+LD +TV G +HL+ +E++++ELL + TL +E+ L+ Sbjct: 119 SRANVILHAFGVDLDPAGRTVLQNGRPVHLSPREFELLELLMRNRGMTLYREVLYERLWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +D+ I +LRKKL G K+ I TV+ GY L Sbjct: 179 DDDTFDTRPLDLCITRLRKKL----GWKSEICTVFRVGYRL 215 >gi|89896612|ref|YP_520099.1| hypothetical protein DSY3866 [Desulfitobacterium hafniense Y51] gi|89336060|dbj|BAE85655.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD +A L+ + V + G G++ +D +I+DL L + GFE+ Sbjct: 4 ILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGAYDILIVDLMLPQLDGFEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ +R K+ P+ +LS S DK+RGL GADDY++KPF+ EL+ARIR+ ++R Sbjct: 64 IKEVR-KKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRYERL 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I L +N + V V G + T KEY+++ + N +KE + Sbjct: 123 TGKNQSPEVINHRGLEINTASHKVSVNGKEVQFTAKEYELLLFFASNPNILFSKERIFDL 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + V I K+RKK+ YIETVWG GY Sbjct: 183 LWGAEYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGY 224 >gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656] gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656] gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 233 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 11/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E ++ + + GE + + Y+ + ++LDL L I G++ Sbjct: 6 KILIVDDDNNIAELISLYLTKECYDTKIVNDGEQALIAFEHYKPNMLLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK P+ +LS + DKV GL+ GADDYI KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIR-AKSDVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLRRFQP 124 Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + D L VNL +V G +I + KE +++ L+ N T+E Sbjct: 125 AKPEAYASVDIKCVEYPGLIVNLSNYSVTYDGQQIDMPPKELELLYFLASSPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L++++ + + +DV + +LR+K+ + + I TVWG GY Sbjct: 185 LLDNIWGYEYVGDTRTVDVHVKRLREKIKDKPTWR--IATVWGIGY 228 >gi|227536221|ref|ZP_03966270.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300772180|ref|ZP_07082050.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|227243924|gb|EEI93939.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300760483|gb|EFK57309.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 225 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD ++ I L+ FNV + E+ E+ + FD II+D+ L I G Sbjct: 1 MQILLVEDDARISDFIVKGLEENGFNVQLCVSAEEAREVVFEHSFDVIIMDVMLPGIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R K TP+ +LS ++ EDK+ L SGADD++ KPF+ +EL++RI A+ RR++ Sbjct: 61 QLTKMIRYKKNLTPILMLSALNEAEDKIAALDSGADDFLVKPFHFKELISRINALTRRTK 120 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + +V +L ++ D V G +I L+ KE++++ L+ + +++ M LN Sbjct: 121 YQKQEVLSNSLVIQNLKIDRDKYAVYQDGEKIELSPKEFKLLLYLAENTDKVVSRTMVLN 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + ++DV+I LR K+ + +I TV G GY+ + Sbjct: 181 AVWGINFDNNTNVVDVYISYLRNKIDESK--HQFILTVKGTGYMFQ 224 >gi|77459741|ref|YP_349248.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383744|gb|ABA75257.1| putative two-component response regulator transcriptional regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 227 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L S +V D G +G++ +D I LD L ++ G Sbjct: 3 RILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLDRAVSGNYDLITLDRMLPELDGLA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 ++ LR ++TP+ ++S +S ++++VRGL++G DDY++KPF +E+ AR+ ++RR S Sbjct: 63 IVTTLRTMGVATPILMISALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRRQNS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + DL ++L + + L EY+++E L L++ M ++ Sbjct: 123 NGAQPTTLQVADLQLDLISHEARRAEQVLTLLPTEYKLLEFLMRNSGQILSRMMIFEEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ + G I TV G GYV+ E Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DPPGNVPLIRTVRGSGYVIAE 225 >gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE + D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVAFQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + I+ +L + + +G ++ LT KE++++ L+ K LT++ Sbjct: 124 QEEQIPEVPDENSIMISELKILPEFYEAYFRGEKLELTPKEFELLVYLARNKGRVLTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ + YI+T+ G GY L E DE Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLRDKIEHNTKKPAYIKTIRGLGYKLEEPKGDE 238 >gi|296137843|ref|YP_003645086.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296025977|gb|ADG76747.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 232 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 124/221 (56%), Gaps = 6/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ AL + L E F+V V GE G++L + + IILD+GL I G EV Sbjct: 9 VLVIEDEPALGRLVRDYLTREGFDVTVAMDGERGLQLARELDPAVIILDIGLPRIDGLEV 68 Query: 63 LRALRVAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R+LR + S V +L+ DK+ GL GADDY+ KPF+ E+VAR+RA++RR R Sbjct: 69 CRSLR--RFSDAYVLMLTARGDETDKIVGLSVGADDYLVKPFSPREVVARVRAMLRRPRR 126 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + GDL+++L + V + I LT E+ ++ +L+ N ++ + + Sbjct: 127 MPDGAGTDRTYGDLAIDLLGREVRIGEKEIDLTATEFDVLAVLARSPNVAFSRSQLIEAV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +++DV + ++R+KL + AG Y+ TV G GY Sbjct: 187 WGAGWVGDERLVDVHVGRVRRKLGDDAGDPRYVRTVRGVGY 227 >gi|195978046|ref|YP_002123290.1| TCS transcriptional regulatory protein ciaR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868625|ref|YP_002744573.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225870423|ref|YP_002746370.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195974751|gb|ACG62277.1| TCS transcriptional regulatory protein ciaR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225699827|emb|CAW93666.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225701901|emb|CAW99401.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 224 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 129/224 (57%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+EDD +L++SI L V D G++G+ + +D I+LDL L + GF Sbjct: 2 IKLLLVEDDLSLSNSIFDFLDDFADVTQVFD-GDEGLYEAESGIYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ALR I PV I++ SI+DK G + GADDY++KPF EEL RI+A+++R Sbjct: 61 QVLKALREKDIKIPVLIMTAKESIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRVG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+L+V+ K V+V G I L GKE ++ + +N L K + ++ Sbjct: 121 KFNDKSLKFGNLTVDTTRKEVQVNGQAIELLGKELDLLIYILQNQNVILPKSQIFDRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++V++ K+RKKL N+++T+ GY+L+ N Sbjct: 181 FDSDTTISVVEVYVSKIRKKLK-GTDFVNHLQTLRSVGYILKAN 223 >gi|118443810|ref|YP_877372.1| DNA-binding response regulator [Clostridium novyi NT] gi|118134266|gb|ABK61310.1| DNA-binding response regulator [Clostridium novyi NT] Length = 227 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 127/226 (56%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D+++L + +++ L EN+ V + G+ IEL + D ++LDL L DI GF Sbjct: 1 MKILLVDDEESLLNLVKINLMFENYEVITAECGKTAIELFQTQSPDLVVLDLMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V+ A++ P+ +LS + I D++ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 QVIHAIQEINNEVPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S S+I G + + D + V + + T E++M+ L+ T+E Sbjct: 121 KAKLLSNKKQSSIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEMLVLMVKNSYKVFTREE 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + +D+ I ++RKKL ++ I+T++G GY Sbjct: 181 LLDKIWGYDFSGNTRAVDIHIKRIRKKL---LEHEDAIKTIYGVGY 223 >gi|108801411|ref|YP_641608.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870564|ref|YP_940516.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108771830|gb|ABG10552.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696653|gb|ABL93726.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 233 Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 118/212 (55%), Gaps = 6/212 (2%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F+V G + + DAI+LD+ + + G V+ ALR P Sbjct: 22 SLERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL----IVTG 130 VC+LS SS++D+V GL++GADDY+ KPF ELVAR++A++RR RG + + I G Sbjct: 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR-RGSSATFSSETIQVG 140 Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190 L V++ + V G + LT +E+ ++ +L+ K L++ L ++ + ++ Sbjct: 141 PLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVV 200 Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DVFI LR+KL A G + TV G G+VLR Sbjct: 201 DVFIGYLRRKL-EAGGAPRLLHTVRGVGFVLR 231 >gi|225378285|ref|ZP_03755506.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM 16841] gi|225209852|gb|EEG92206.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +++ +D I+LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENHYDMILLDIMLPKMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ G Sbjct: 64 VCQHIREFS-DMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAG 122 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I GDL ++ +++ + + ++LT KE+ ++ELL N ++E LN Sbjct: 123 SQPKKEDSKVIEAGDLRLDCESRRLFILNKEVNLTAKEFDLLELLVNNPNKVYSRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V+ +DV + +LR+K+ Y+ T WG GY +N Sbjct: 183 LVWGYEYPGDVRTVDVHVRRLREKIEKNPSEPKYVHTKWGVGYYYYQN 230 >gi|254248194|ref|ZP_04941514.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124874695|gb|EAY64685.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 224 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL IEDD +A I L + + V G DG+ +D + LD L D+ G + Sbjct: 4 ILTIEDDPLIADHIAHTLHAAGHQIDVARTGRDGMARAMSANYDVVTLDRMLPDLDGLTI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSRG 121 L +R + TPV ++S MS ++ ++ GL++G DDY+ KPF+ EE+ ARI ++ RR RG Sbjct: 64 LATMRGVGLDTPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRRRPRG 123 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++++ G+L+++L + + + L E +++E + LT+ M ++ Sbjct: 124 TRVETVLRAGELALDLVRRRATLGARELALLPTESRVLEFMMRNAGRVLTRTMIFEAVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R +P +IDV I +LRKK+ N G I T+ G GY+L Sbjct: 184 CRFDPGTNLIDVHIGRLRKKV-NRPGAAPLIRTIRGSGYML 223 >gi|256377936|ref|YP_003101596.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255922239|gb|ACU37750.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 227 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD + ++ L L+ E F V GE + L FD ++LDL L + G V Sbjct: 5 VLMVEDDAHIRQALGLALEDEGFAVSEAVSGEQALALLDRRAFDVVLLDLMLPGVDGLHV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR ++ PV +++ + ED + GL++GADDY++KP L ARIRA++RRS G Sbjct: 65 CRVLR-SRGDLPVIVVTARADAEDVIAGLEAGADDYVTKPLVAAVLAARIRALLRRSGGA 123 Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 AQ+ + GDL V D +T G ++HLT E++++ L + +T+E LN ++ Sbjct: 124 AQADELRAGDLVVRQDNRTAHRAGEQVHLTRTEFRLLVELLAAEGRVVTREQLLNRVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++DV I +LR+K+ + TV G GY Sbjct: 184 DYFGDTRLLDVHIRRLRRKVEPDPDTPALVLTVRGSGY 221 >gi|154482555|ref|ZP_02025003.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC 27560] gi|149736580|gb|EDM52466.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC 27560] Length = 228 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 129/228 (56%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ L+++D+K + ++ L+ E + V G++ ++ K E+D ++LDL L + G+ Sbjct: 1 MKALVVDDEKLIVKGLKFSLEQEGYEVDCAYDGQEAVDKAKETEYDIVLLDLMLPILTGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR++ Sbjct: 61 EVCQQIREFS-DMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNK 119 Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + +I +G L ++++AK + ++ I LT KE+ +++LL+ +E Sbjct: 120 RKAPAKPEEPKVITSGKLKLDIEAKRLYIEDREIRLTVKEFDILKLLAENPGKIYGREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + + + +DV + +LR+K+ YI T WG GY + Sbjct: 180 LTLIWGSKYPGDARTVDVNVRRLREKVEENPAKPEYIHTKWGMGYYFQ 227 >gi|16330036|ref|NP_440764.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1652523|dbj|BAA17444.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 234 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 13/233 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ AL + L + + V D G+ G+ + ++D +ILD L + G E+ Sbjct: 4 ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R+ STPV L+ +++D+V GL +G DDY+ KPF EL+AR+RA++RR + H Sbjct: 64 CRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRR-QSH 122 Query: 123 AQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ L+ ++S+++ + QG RI L+ KE ++ L L+ Sbjct: 123 GETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSH 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +HL+ G P ++ + LR+K+ + I +V+G+GY N Sbjct: 183 EEIYSHLWPGESPPSSNVLAALVRLLRRKIEQPNAPR-LINSVYGKGYCFEAN 234 >gi|330813170|ref|YP_004357409.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Candidatus Pelagibacter sp. IMCC9063] gi|327486265|gb|AEA80670.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Candidatus Pelagibacter sp. IMCC9063] Length = 228 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 126/223 (56%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I ++ED+ ++A ++ L+ EN+ V++++ GE+G++ K E D I+LD L D+ G E Sbjct: 4 KIFIVEDEPSIATLVKYNLEKENYKVFISNNGEEGLKEIKKIEPDLILLDWMLPDLSGIE 63 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R+L+ K P+ +L+ EDKV GL +GADDY+ KPF+ ELVARI A++RR Sbjct: 64 ICRSLKKDKKFKFIPIIMLTAKGQEEDKVLGLNTGADDYLVKPFSHSELVARINALLRRV 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A + + DL V+ K V +I L EY++I ++E L ++ Sbjct: 124 KPQAIEDSVTFEDLKVDRLQKRVSRGSQQIILGPTEYRLINFFITNPRRVFSREQLLENV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E++ +DV I +LRK + N G K+ I TV GY L Sbjct: 184 WLNSINVELRTVDVHIRRLRKAI-NLPGKKDLIRTVRSTGYSL 225 >gi|323483423|ref|ZP_08088811.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum WAL-14163] gi|323691077|ref|ZP_08105359.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] gi|323403277|gb|EGA95587.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum WAL-14163] gi|323504863|gb|EGB20643.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] Length = 229 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++++A + L+ F V + + GE G++ +FD +ILDL L I GFE Sbjct: 3 RILIVEDEESIAELEKDYLELSGFEVEMENNGEAGLKRGLEEDFDLLILDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICKKVREVK-NTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V + G + T KE+ ++ L+ N TKE Sbjct: 122 LIGSGTPENEIIEIRGLKIDKTARRVYINGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SKIWDMESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|257898553|ref|ZP_05678206.1| transcriptional regulator [Enterococcus faecium Com15] gi|257836465|gb|EEV61539.1| transcriptional regulator [Enterococcus faecium Com15] Length = 224 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 133/223 (59%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L++EDDK L+++I+ +L + V + GE EL +D ILDL + ++ G+ Sbjct: 2 FKLLVVEDDKVLSNNIKEILTTIGEITQVYNGGEGLFELESGV-YDLAILDLMMPEMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR KI TPV IL+ S+EDK+ G + GADDY++KPF +EEL+ R++A+++RS Sbjct: 61 EVLAKLRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSL 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++++ D+S +L + V + + + GKE++++ K LTKE + ++ Sbjct: 121 GLFDENILKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ LRK L + K I+T+ GY+L+ Sbjct: 181 GFDSDTTITVVEVYMSNLRKHLRSTGLDKE-IKTLRNVGYILQ 222 >gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 247 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 8/237 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++D++ + ++ L E F + G + L + +D I+LD+ L + G E Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++AI+RR+ Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H + L + + V + LT KEY+++ L N TLT+E Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ E +++DV I KLR+K+ + YI+T+ G GY +E D T Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS 247 >gi|187735330|ref|YP_001877442.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] gi|187425382|gb|ACD04661.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] Length = 232 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 120/218 (55%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D++ + + L L ++V + G+ G+ DAIILDLGL DI G EV Sbjct: 8 ILIIDDERQIRRLLNLTLTGAGYHVRECENGQLGLSETALKRPDAIILDLGLPDINGLEV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR P+ IL+ ++KV L +GADDY++KPF+ EL+AR+R ++RR+R Sbjct: 68 LKQLR-EWTQVPILILTAWDREDEKVDALDAGADDYLTKPFSGRELLARLRVMLRRNRPD 126 Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + S+ G + V+L ++ VE IHLT KEY ++ LL L + +T L ++ Sbjct: 127 REPSVFRLGPIVVDLSSRRVEKGKEEIHLTSKEYGILRLLLLHQGKVMTHRQLLREIWGP 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + V I LR+KL ++ I G GY Sbjct: 187 QHEEDTHYLRVHIAHLRQKLGDSDPENRIIRAESGLGY 224 >gi|189424064|ref|YP_001951241.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189420323|gb|ACD94721.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 223 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K +A I+ L+ E + V GE+G+ + +D +ILD+ L G Sbjct: 1 MRILVVEDEKKVAAFIKRGLEEEGYQVDAVHDGEEGVRQAQEQPYDLLILDVMLPSKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR A PV +L+ + +D V GL +G+DDY++KPF EL AR+RA+ RR Sbjct: 61 SVVRELRQAGTVMPVLMLTARDTTDDIVAGLDAGSDDYLTKPFAFAELSARVRALARRIG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V DL ++ ++ V I LT KEY ++E L T +T+ M +++ Sbjct: 121 RDRGAELVVADLRMDPLSRKVWRGDKEIELTIKEYGLLEFLMRNAGTVVTRNMIAEKVWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E IIDV++ +RKK+ + I TV G+GY L+ Sbjct: 181 HSFESFTNIIDVYVNYVRKKVDKGF-DRKLIHTVRGQGYTLK 221 >gi|330445927|ref|ZP_08309579.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490118|dbj|GAA04076.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 225 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD I L+ F V + G G+ + ++ IILD L + G Sbjct: 1 MKVLVIEDDITTREFIAQGLREHGFVVDEAEDGHQGLMMATSCDYQLIILDRMLPMLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL ALR + TP+ ILS M S+ED+V GL +G+DDY++KPF ELVAR + +V+R++ Sbjct: 61 KVLAALRATENQTPILILSAMDSVEDRVAGLSAGSDDYLTKPFALAELVARAKILVKRNQ 120 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A S + DL +++ + V ++L KE+ +++ L + +++ + Sbjct: 121 ASATISSEYIYDDLRLDIKSHRVWRGSRMLNLQQKEFLLLQYLMEHAESVVSRMSLFESV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV I LRKKL G + I TV G GYVLR Sbjct: 181 WSYHFDPKTNVIDVHIANLRKKLEE-GGEPSLIHTVRGAGYVLR 223 >gi|309800520|ref|ZP_07694672.1| NsuR [Streptococcus infantis SK1302] gi|308115868|gb|EFO53392.1| NsuR [Streptococcus infantis SK1302] Length = 223 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 135/225 (60%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL I+DD+ + I L++ NFNV E+ I++C F FD I+LD+ + I G E Sbjct: 4 KILAIDDDEKILRLIRNTLEANNFNVETRSNIEE-IDICDFTGFDLILLDI-MMPISGLE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 + R++R ++I+TP+ L+ ED ++G+Q+GADDYI+KPF+ +EL+ARI+ +RR R Sbjct: 62 ICRSIR-SQITTPILFLTAKDIEEDLLKGIQAGADDYITKPFSIKELIARIQMHLRREER 120 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H S + D++ D++ V Q I LT +E+ ++ LL+ +N + E ++LY Sbjct: 121 SHPASKEELISDITFYQDSQEVYYQSKSISLTKREFDLLYLLAKNENRIFSAEELYDYLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ I +I ++R+K A + I+TVWG GY ++N Sbjct: 181 PVSSDVQLRSITEYIYQIRQKFK--AHQIDPIKTVWGGGYKWQKN 223 >gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes] Length = 233 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 133/234 (56%), Gaps = 11/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G EV Sbjct: 1 MLVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 121 AEIIEDITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233 >gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae] Length = 253 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 131/233 (56%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 +RIL ++DD+A+ S+ +S +FN Y +L DG+E + DA++LD+ + + Sbjct: 26 VRILAVDDDRAVRESLR---RSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRL 82 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+ARIRA++R Sbjct: 83 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLR 142 Query: 118 RSRGHAQSLIVTGDLS-VNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174 R++ + V S + LD T EV +G R I LT E+ ++E+L LT+ Sbjct: 143 RTKPDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRI 202 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 203 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGESRLIHTVRGVGYVLRETPP 253 >gi|69244158|ref|ZP_00602694.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257880948|ref|ZP_05660601.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257884605|ref|ZP_05664258.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257892530|ref|ZP_05672183.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|258616213|ref|ZP_05713983.1| putative response regulator CiaR [Enterococcus faecium DO] gi|293560618|ref|ZP_06677106.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1162] gi|293569893|ref|ZP_06680980.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1071] gi|294614504|ref|ZP_06694417.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1636] gi|294617772|ref|ZP_06697386.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1679] gi|294621682|ref|ZP_06700846.1| transcriptional regulatory protein CiaR [Enterococcus faecium U0317] gi|314939067|ref|ZP_07846330.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943555|ref|ZP_07850318.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314948812|ref|ZP_07852183.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314952199|ref|ZP_07855216.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314993264|ref|ZP_07858639.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314994826|ref|ZP_07859957.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|68196615|gb|EAN11041.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257816606|gb|EEV43934.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257820443|gb|EEV47591.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257828909|gb|EEV55516.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|291587641|gb|EFF19518.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1071] gi|291592622|gb|EFF24218.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1636] gi|291595946|gb|EFF27225.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1679] gi|291598691|gb|EFF29744.1| transcriptional regulatory protein CiaR [Enterococcus faecium U0317] gi|291605441|gb|EFF34887.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1162] gi|313590937|gb|EFR69782.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313592245|gb|EFR71090.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313595664|gb|EFR74509.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597753|gb|EFR76598.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313641619|gb|EFS06199.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313644755|gb|EFS09335.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 224 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 135/223 (60%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L++EDDK L+++I+ +L + V D G +G+ + +D ILDL + ++ G+ Sbjct: 2 IKLLVVEDDKVLSNNIKEILAAIGEITQVYD-GSEGLFELESGVYDLAILDLMMPEMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R KI TPV IL+ S+EDK+ G + GADDY++KPF +EEL+ R++A+++RS Sbjct: 61 EVLAKIRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSL 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++++ D+S +L + V + + + GKE++++ K LTKE + ++ Sbjct: 121 GLFDENVLKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+V++ LRK L + K I+T+ GY+L+ Sbjct: 181 GFDSDTTITVIEVYMSNLRKHLRSTGLDKE-IKTLRNVGYILQ 222 >gi|83953229|ref|ZP_00961951.1| two component transcriptional regulator, winged helix family protein [Sulfitobacter sp. NAS-14.1] gi|83842197|gb|EAP81365.1| two component transcriptional regulator, winged helix family protein [Sulfitobacter sp. NAS-14.1] Length = 218 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 116/222 (52%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIED+KALA ++ L+++ V + L E L + +D ++LDL L D G Sbjct: 1 MRILLIEDEKALARPLKEHLEADRHIVEWFCTLDEADAAL-RTLSYDVVLLDLQLPDGDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 L LR I TP+ IL+ + D++ GL GADDY+ KPF+ +E+ ARI + RRS Sbjct: 60 LNFLSKLRAKAIRTPILILTARDKVSDRIEGLNRGADDYVIKPFDLDEVKARIHTVCRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + D+ VNL TV + LT KE+ + E L RK + KE +Y Sbjct: 120 ANQFAQTVQLHDVVVNLSDHTVMRAEQPVRLTAKEWGVFETLLRRKPQIVPKESLEAAIY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +E E I+ I +LR KL GK+ I T G GY L Sbjct: 180 DYGEEVESNAIEAHISRLRTKL-----GKDLIATHRGLGYAL 216 >gi|300172610|ref|YP_003771775.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886988|emb|CBL90956.1| Two-component response regulator yycF [Leuconostoc gasicomitatum LMG 18811] Length = 235 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 133/234 (56%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + V G++ + + + D ++LD L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEKPDLVLLDQMLPEIDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R +K TPV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R + Sbjct: 63 VLRQIR-SKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 AQ + I GDL+++ A V G I LT +E++++ L+ + +T+E Sbjct: 122 VAQHIDESVVNTDDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHISQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ +V+ +DV + +LR+K+ + N++ T G GY LR +A+ Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE 235 >gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] Length = 236 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 128/225 (56%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E F V+ G + +E K E D I+LD+ L G E Sbjct: 4 RILVVDDEKPIADILKFNLEKEGFEVFCAYDGNEAVEQVKKEEPDLILLDIMLPHKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVRKS-YDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRRKS 122 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A Q + GDL++ DA V+ +G I LT +E+++I L+ +T+E L Sbjct: 123 GAEEVSTQKELTVGDLTIYPDAYQVKRRGETIELTHREFELIHYLAKHLGQVMTREHLLQ 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +V+ +DV + +LR+K+ + N+I T G GY L Sbjct: 183 AVWGYDYFGDVRTVDVTVRRLREKVEDNPSYPNWIITRRGVGYYL 227 >gi|256422749|ref|YP_003123402.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256037657|gb|ACU61201.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 266 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +A++++ L+ F V V G G L +D +ILDL L G+E Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +R + P+ +L+ + ++DK++ + GADDY+ KPF+ EL+ARIR ++R+ Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + Q IV GDL ++ + K V G +I LT KEYQ++E L+L K ++K + Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D + +I+V++ LRKK+ K + T G GY L E Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNK-LLHTKTGMGYYLAE 265 >gi|242239998|ref|YP_002988179.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] gi|242132055|gb|ACS86357.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 231 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LAH +E L F V G +L + + ++LD+ L + GF Sbjct: 8 MRLLLVEDHDELAHWLEKALSESGFAVDRAGDGMTAEQLLQLETYTLMVLDVSLPKMDGF 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + PV +L+ + + D+VRGL GADDY++KPF+ EL AR+RA++RRS+ Sbjct: 68 SVLARLRKRGQNLPVLLLTARTDVADRVRGLNLGADDYLAKPFDVAELEARLRALLRRSQ 127 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQS+ GDLS + D + G + LT +E ++ L R+ + ++ ++ Sbjct: 128 GLAQSVQHFGDLSWH-DEGYFLLWGKPLALTPREQAVLHTLMQRRGRPVLRQYLYEQVFT 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAK 226 D+ + +D+++ ++RKKL AG I T+ G GY L E+AK Sbjct: 187 FLDDVSIDSLDLYVHRVRKKL---AGSNVAIVTLRGLGYSLECEHAK 230 >gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 226 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 132/226 (58%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++ L+ IEL LK E + + + G G+E+ + E D ++LD+ L +I G Sbjct: 2 VKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVLR LR P+ +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR +++ Sbjct: 62 EVLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I G LS++ + V I LT +E+ ++++L KN LT+ + + Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRRKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +IDV+I LR K+ +A K I TV G GYV+++ Sbjct: 181 VCGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKD 225 >gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes] gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes] gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes] Length = 233 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 133/234 (56%), Gaps = 11/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G EV Sbjct: 1 MLVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 121 AEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233 >gi|50121372|ref|YP_050539.1| DNA-binding transcriptional regulator PhoP [Pectobacterium atrosepticum SCRI1043] gi|49611898|emb|CAG75347.1| two-component response regulator of virulence determinants [Pectobacterium atrosepticum SCRI1043] Length = 229 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL++ED+ L H + + + V D D E F D I+DLGL D Sbjct: 1 MRILVVEDNVLLRHHLTVQMNEMGHQV---DAASDAKEADYFLHENMPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++ P+ +L+ +DKV L++GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGMSMIRRWRAHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + + I LT EY +IE L K ++KE + Sbjct: 118 RNSGLASQIISLPPFEIDLSRRELMIHSAPIKLTAFEYTIIETLIRNKGKVVSKESLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A ++ I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQ-ADAQDVITTVRGQGY 218 >gi|313617375|gb|EFR89783.1| regulatory protein VanR [Listeria innocua FSL S4-378] Length = 231 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRKNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q+ ++ G + V+ V V +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL +A GG+N I+T+WG GY Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGY 227 >gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 229 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 127/223 (56%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD+ + + L E + V G +G+ E D ++LD+ + + GFEV Sbjct: 5 ILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAEPDLVVLDVMMPQVDGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R + PV +L+ +E++V+GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 65 CRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKTEQ 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + + DL ++ +++ V G R+ LT KE++++ L L++++ ++ ++ Sbjct: 125 QDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +++V+I LR+K + GGK I T+ G GY+LR Sbjct: 185 GYDYSGESNVLEVYIAMLRQK-TEQDGGKRLIRTIRGAGYILR 226 >gi|299143501|ref|ZP_07036581.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517986|gb|EFI41725.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 230 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+A IE LK + F V + GE +E K FD IILD+ + I GF Sbjct: 4 KILVVDDEAAIAEIIEFNLKRDGFEVELAFDGEQCLEKVKDSNFDLIILDVMMPKIDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR + P+ +L+ DK+ GL+ GADDY+ KPF+ EL AR++AI+RR Sbjct: 64 VLRELRKTR-HIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRRYDF 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I GDL ++L ++ +G I LT +EY++++ L+ ++E L Sbjct: 123 ETETPNSESKVIEAGDLIIDLTKYEIKKKGKVIDLTLREYELLKYLASSPGQVFSREELL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++D +++ +DV + +LR+K+ + YI T G GY Sbjct: 183 DQVWDYEYYGDIRTVDVTVRRLREKIEDKDKDFKYIMTKRGVGY 226 >gi|294634503|ref|ZP_06713038.1| QseB [Edwardsiella tarda ATCC 23685] gi|291092017|gb|EFE24578.1| QseB [Edwardsiella tarda ATCC 23685] Length = 220 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD + + + EN+ + L + ++ IILDLGL D+ G Sbjct: 1 MKILIVEDDTLIQQGLAQAMGRENYACDCAGSAAEANGLLQSGQYSLIILDLGLPDMDGG 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR R I+TPV IL+ ++ ++V GL +GADDY+ KPF EL+AR RA++RR + Sbjct: 61 SALRQWRRDGIATPVLILTARDTVGERVAGLDAGADDYLVKPFALAELLARTRALIRRMQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ ++ ++L V + +T KE+ ++ L R T+++E+ LY Sbjct: 121 GLCDNILQVDNIRLDLSNHQVSCNNQALEVTPKEFTILARLMTRAGQTISREVLQQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +DE ++V I LR+KL G+ I+T+ G GY L Sbjct: 181 WQDELSSNSLEVHIHNLRRKL-----GRERIKTLRGVGYRL 216 >gi|172065501|ref|YP_001816213.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997743|gb|ACB68660.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 221 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L I L+ + F V +V D G+ + + A +LDLGL + G Sbjct: 1 MRILLVEDDVLLGDGIRAGLRQQGFQVDWVRD-GDAAQRELRAHVHAATVLDLGLPLVDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+ +R ++P+ +L+ ++ D++R L +GADDY+ KP + EL AR+RA+VRRS Sbjct: 60 MDVLKRIRRDGTASPILVLTARDAVPDRIRALDAGADDYVIKPVDLYELGARLRALVRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + D+ + ++T G + L+ +E+ ++ +L L L++E +LY Sbjct: 120 HGRPMERLHAQDVELEPASRTTRRAGVAVALSTREFDLLHILMLNAGRVLSREQIEQYLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225 E E ++V I +LR KL G I TV G GYVL R++A Sbjct: 180 SWGQEVESNAVEVHIHRLRAKL-----GSELIRTVRGVGYVLMRDDA 221 >gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82] gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82] gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 230 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 128/228 (56%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +++ +D ++LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQHIREFS-NMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAA 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I GDL ++ +++ + + G ++LT KE+ ++ELL N +E LN Sbjct: 123 SQPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V+ +DV + +LR+K+ + Y+ T WG GY +N Sbjct: 183 LVWGYEYPGDVRTVDVHVRRLREKIESNPSEPKYVHTKWGVGYYYSQN 230 >gi|239625414|ref|ZP_04668445.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519644|gb|EEQ59510.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 232 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDDKA+ + I L+ ++ D GE GI D ++LDLGL D+ G +V Sbjct: 6 ILIIEDDKAIKNLIATTLEMHEYHYIWADKGEQGILTAASQRPDIVLLDLGLPDMDGVDV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R +R + + P+ ++S S +DK+ L +GADDY++KPF+ +EL+AR+R+ RR Sbjct: 66 IRKIR-SWSNMPIIVISARSGDDDKIAALDAGADDYLTKPFSVDELLARLRSTQRRLNYM 124 Query: 119 -SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S QS + T G L+++ A + G +HLT EY+++ LL+ LT Sbjct: 125 QSLEDVQSSVFTNGGLTIDYAAGYASLDGEELHLTPYEYKLLCLLAHNVGKVLTHSYITR 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +V + VF+ LRKK+ YI+T G GY Sbjct: 185 EIWGAAWEGDVASLRVFMASLRKKIEKEPSQPQYIQTHVGVGY 227 >gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium bovis AF2122/97] gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA [Mycobacterium bovis AF2122/97] gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory protein tcrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 253 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+IED+ + + L E V G + ++DA++LD+ L I GF Sbjct: 23 VRILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ G +ET+ G GY LR++ Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPF-GVTSLETIRGAGYRLRKDG 246 >gi|270265048|ref|ZP_06193311.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270040982|gb|EFA14083.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 220 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ L + L L +E + L ++ IILDLGL D G Sbjct: 1 MKLLIVEDDELLQQGLALALANEGYACDCAATAAQANALLITSQYSMIILDLGLPDQDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R ++ PV IL+ ++ED+V GL +GADDY+ KPF EL AR+RA++RR + Sbjct: 61 SLLRQWRRQQVDLPVLILTARDALEDRVDGLDAGADDYLVKPFALVELQARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ DL +NL ++ V VQ + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GHSDNLMQLDDLQLNLSSQQVYVQQQPVEVTPKEFAILSRLMMRAGQTVNRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D+ ++V I LR+KL GK+ I TV G GY L ++ Sbjct: 181 WQDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRLESSS 220 >gi|297200104|ref|ZP_06917501.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147578|gb|EFH28677.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220 >gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia PC184] gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia PC184] Length = 282 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 49 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 108 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 109 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 168 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G L+++ A+ V G R+ LT +E+ ++ + ++ Sbjct: 169 LARDSRIDAGTLDVAG-LAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDL 227 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 228 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 274 >gi|49481195|ref|YP_036138.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196039763|ref|ZP_03107067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|49332751|gb|AAT63397.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196029466|gb|EDX68069.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 229 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 4 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 124 DEKANTITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|309779354|ref|ZP_07674116.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|308921912|gb|EFP67547.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 244 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 128/242 (52%), Gaps = 17/242 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE----------FDAII 49 MR+LL+EDD + S+ L+ + F + +V D GE + FD ++ Sbjct: 1 MRVLLVEDDDMIGDSVRKGLRHDGFAIDWVRD-GEAAVHAVTAPGAASAESGSTLFDLML 59 Query: 50 LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109 LDLGL G +V+R +R I+ P+ IL+ ++ D+V GL +GADDY+ KPF+ +EL Sbjct: 60 LDLGLPKRDGLDVVREVRQRGIAIPILILTARDAVADRVAGLNAGADDYLVKPFDLQELA 119 Query: 110 ARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 AR+ A++RR G A L+ G++ +N + V G + L+G+E+ ++ L R Sbjct: 120 ARMHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGVPVKLSGREFAVLHALLARPGKVW 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + ++LY +E ++V+I LRKKL G ++I+ + G GYV+ A Sbjct: 180 SIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREASTSP 234 Query: 230 CE 231 E Sbjct: 235 AE 236 >gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 232 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 116/218 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 10 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 70 VARRLRGEGHAIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 130 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 190 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 227 >gi|229062765|ref|ZP_04200070.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228716525|gb|EEL68228.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 225 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + + G+ + ++D I+LD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTQEGYFILKLHNENQGLNIIYEQDWDIIVLDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R +R+ K +TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 IQQNETNFFQFKDLFVDASSHIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLK-CEKKERYIQTIHGRGYSMVE 225 >gi|226941119|ref|YP_002796193.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9] gi|226716046|gb|ACO75184.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9] Length = 233 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 113/230 (49%), Gaps = 9/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + L+L+ F V G ++L D ++LD+ + G EV Sbjct: 4 ILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHVDLLVLDVNMPGPDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ LS + DKV GL +G DDY+ KPF+ ELVARI A +RR Sbjct: 64 CRQLRERAAVLPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLRRVNRF 123 Query: 123 AQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + V G L V+LD V V G + LT +E++++ LL+ R + E Sbjct: 124 APAAAVPDNPQCLRAGVLQVDLDTCRVRVAGQPVTLTEREFRLLALLARRPERVFSLEEL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D D K I I LR KL AAGG +ETVWG GY LR Sbjct: 184 HQGAWDNHDPVADKTIMAHISNLRHKL-GAAGGAGLVETVWGFGYRLRST 232 >gi|255279876|ref|ZP_05344431.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM 14469] gi|255269649|gb|EET62854.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM 14469] Length = 246 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAIILDLGLTDIP 58 ++ILLIEDD+ L SI L+ + V GE + L Y +D I+D L + Sbjct: 19 IKILLIEDDRELCRSIRRELEKNGYMVECCSDGETAMFYALNTDYGYDIAIVDRMLPVVD 78 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G ++RA+R I PV I++GMS+++D+V GL GADDY+ KPF+ EL+AR+RA+ RR Sbjct: 79 GLTIIRAMRRKNIQIPVIIITGMSALDDRVDGLDGGADDYLVKPFHIRELLARVRALTRR 138 Query: 119 SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + L+ GDL + +T++ ++ LT KE +++ L + ++E + Sbjct: 139 PHQMQDAELLTCGDLRFDTSTRTLQCSQRKVALTAKEAELLGTLMRQPEAVFSREQLVLK 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + E +D +I LR++L G I+T++G GY L E+ Sbjct: 199 VWGSDSDIEPGNVDNYISFLRRRLRE-LGSACQIKTIYGTGYRLEES 244 >gi|126464554|ref|YP_001045667.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332560699|ref|ZP_08415017.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|126106365|gb|ABN78895.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] gi|332274497|gb|EGJ19813.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 219 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L +I + +E ++T + ED + +D ++LDL L D G Sbjct: 1 MRILLVEDDPGLGGAIRDQISAEGHAADWMTGV-EDALAAVATTAYDLVLLDLNLPDGSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + LR LR K + PV IL+ + +++ GL +GADDY+ KPF+ EL ARI A+ RR Sbjct: 60 LDFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ + G L V++ + ++ + L+ +E+ + E L R + ++K LY Sbjct: 120 AGNPSPRLALGPLEVDIADRRIDGPEGEVTLSQREWAIFEALVKRPGSVVSKTQLEETLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V++ +LRKKL G++ IET G GY L Sbjct: 180 AFDAEVESNTIEVYVSRLRKKL-----GRDRIETRRGMGYRL 216 >gi|291445133|ref|ZP_06584523.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348080|gb|EFE74984.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 228 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 7 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 67 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 126 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 223 >gi|269957382|ref|YP_003327171.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306063|gb|ACZ31613.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 227 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 123/220 (55%), Gaps = 6/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD A+A + L E ++V V G+ I+ D ++LDLGL D+ G +V Sbjct: 4 VLLAEDDPAIAEPLARALTREGYDVIVQGTGQGAIDNAG--SADVVVLDLGLPDMDGLDV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R LR + +S P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR+ G Sbjct: 62 ARELRGSGLSVPILVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHGE 121 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + D+ V++ A QG R +HLT KE+ ++++L + + ++ + ++ Sbjct: 122 TTEEEELRAQDVRVDVSAHRA-FQGDRELHLTTKEFDLLKVLVANAGSVVVRDTLMRDVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ + LR+KL + A Y+ TV G G+ Sbjct: 181 GSDPVGSTKTLDMHVSWLRRKLGDDANAPRYVSTVRGLGF 220 >gi|239941691|ref|ZP_04693628.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988150|ref|ZP_04708814.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|326778967|ref|ZP_08238232.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|320010461|gb|ADW05311.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] gi|326659300|gb|EGE44146.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220 >gi|229827614|ref|ZP_04453683.1| hypothetical protein GCWU000182_03003 [Abiotrophia defectiva ATCC 49176] gi|229788252|gb|EEP24366.1| hypothetical protein GCWU000182_03003 [Abiotrophia defectiva ATCC 49176] Length = 224 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 121/203 (59%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED+K+L+ +++ +L++ ++V GE+ ++ + +D +ILD+ + G Sbjct: 1 MRLLLAEDEKSLSKAVKAILEAGKYSVDAVFDGEEALDYLETDTYDGVILDIMMPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR PV +L+ S ++DKV GL GA+DY++KPF +EL+ARIRA+ R Sbjct: 61 TVLKELRNKGNLIPVLLLTAKSEVDDKVEGLDLGANDYLTKPFEPKELLARIRAMTRSKM 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ G++S+N + + + L+ KE+QM+ELL ++ E F+ ++ Sbjct: 121 AEGDSVLEYGNVSLNRASFVLSTKTGEFKLSNKEFQMMELLMSYPKNLISAEKFMEKIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203 E ++ ++ V+I LRKKL++ Sbjct: 181 FDTEADISVVWVYISYLRKKLAS 203 >gi|291297687|ref|YP_003508965.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290566907|gb|ADD39872.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 218 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ LA I + L+ V V G+ ++ C F +D ++LD L + G Sbjct: 1 MRVLLVEDEEPLAGYIAVGLRKHGLAVDVAHDGQTALDKCDFTPYDVVVLDRDLPVVHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + L A+ + V +L+ ++ED+V GL GADDY+ KPF EL+AR+RA+ RRS Sbjct: 61 TVCQRL-AAQGTARVLMLTASGTVEDRVDGLSLGADDYLGKPFAFSELIARVRALARRSA 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ D+ + +TVE G IHLT KE+ ++E L ++ E L+ ++D Sbjct: 120 PARPPLLRAADVVCDPARRTVERAGRPIHLTPKEFGVLEQLLAAGGDVVSAETLLDKVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P + + LR+KL G I+TV G GY Sbjct: 180 EHADPFSNAPRITVGTLRRKL----GEPPLIQTVTGAGY 214 >gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus ATCC 14579] gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus ATCC 14579] gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis serovar chinensis CT-43] Length = 239 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I +L + + QG ++ LT KE++++ L+ K+ LT++ Sbjct: 124 QQEEQVAEAPDEDSITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E +E Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGNE 239 >gi|294668444|ref|ZP_06733544.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309597|gb|EFE50840.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 232 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ +A +EL L +F + E +L FD ++LD+GL D GFE+ Sbjct: 11 ILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTDGFEL 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+ LR + PV +L+ D++ GL+ GADDYI KPF+ ELVAR++A++RR++ Sbjct: 71 LKTLR-PQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQTQ 129 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A+S V D + A + QG + LT EY+++ L R ++E L + Sbjct: 130 PAAEAESAPVWHD---DAPAYCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAM 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + G + I+ I LR KL A +I T G GY E Sbjct: 187 FGGNRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFNET 232 >gi|149926102|ref|ZP_01914365.1| DNA-binding response regulator [Limnobacter sp. MED105] gi|149825390|gb|EDM84601.1| DNA-binding response regulator [Limnobacter sp. MED105] Length = 222 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD L + L + +V + E + C +D ++LDLGL G Sbjct: 1 MRLLLVEDDPVLGAQLHKQLGKAGYAADWVQNGNEAEAQGC-IEPYDLVVLDLGLPGKSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+ R + PV +L+ + ++KV G +GADDY+ KPF EEL+ARI A+++R+ Sbjct: 60 LDVLKGWRAQGLKLPVIVLTARGTWQEKVEGFNAGADDYVPKPFQTEELLARIGAVLKRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G A + L ++ +TV+V LTG E++++ L L+K H+ Sbjct: 120 VGTAPESLKAKGLLLDETLQTVKVDNEEPQQLTGTEFRLLRYFMLHPGQPLSKTRLTEHV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 Y+ + + +++V++ +LRKK+ G +I+T G+GYV E A Sbjct: 180 YEYDADKDSNVMEVYVNRLRKKI-----GAQWIQTRKGQGYVFGEPA 221 >gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A++ ++ L+ N++V V + G+ +L +FDAI+LDL L + G Sbjct: 3 KILVVDDEAAISTLLQYNLEENNYDVTVAEDGQTAYQLASQQQFDAILLDLMLPGMDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR KISTPV +++ D+V GL+ GADDYI+KPF+ E++AR++A++RRS+ Sbjct: 63 VLKTLRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQV 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q +I DL ++ + K V + LT +EY+++ + R + +E L Sbjct: 123 DHQVSEEADIIKIQDLVIDDNKKVVTKADKILTLTPREYELLLYFAQRIGRVIDRETILT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E +++D+ I LR+K+ ++TV G GY + Sbjct: 183 AVWGYEYTGESRMVDMHISNLREKIETNPKSPVLLKTVRGFGYTM 227 >gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 223 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 129/226 (57%), Gaps = 11/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++ IE+ LK E F V G++G+ K+ +D IILDL L + G E Sbjct: 4 KILIIEDDPKISRLIEIELKFEGFEVSFAYDGKEGLNSAKYNSYDLIILDLMLPKMNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ I DKV GL GADDY++KPF+ EEL+ARI+A++RR++ Sbjct: 64 VCKRIREFS-EVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKALIRRTKK 122 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178 + Q V DL +N V I L+ +E+++++ L L K L+++ L ++ Sbjct: 123 RNNQEEFVYEDLKINYSTYEVFRGETLISLSKREFELLDYLVLNKGIVLSRDKILENVWG 182 Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 Y G D I+D++I LR K+ K +I+TV G G++ + Sbjct: 183 FEYIGND----NILDLYIKYLRDKIDKPYERK-FIQTVRGLGFIFK 223 >gi|163849781|ref|YP_001637824.1| response regulator receiver [Methylobacterium extorquens PA1] gi|163661386|gb|ABY28753.1| response regulator receiver [Methylobacterium extorquens PA1] Length = 232 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + V G DG L ++D +I+D L + G Sbjct: 1 MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALACEGDYDVLIVDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++R+LR I+TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR + RR Sbjct: 61 SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120 Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G +++ GDL ++ + V G I L +E++++E L +T+ M L Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 H++D +P+ +IDV + +LR K+ I TV G GYV+R + Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRAKIDRGF-EHPMIHTVRGAGYVIRAD 227 >gi|146283707|ref|YP_001173860.1| transcriptional activator CopR [Pseudomonas stutzeri A1501] gi|145571912|gb|ABP81018.1| transcriptional activator CopR [Pseudomonas stutzeri A1501] Length = 244 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L F V G D ++ +D +ILD+ + + G+ Sbjct: 20 MKLLVAEDEPKTGSYLQQGLTEAGFTVDRVTTGTDALQYALSEVYDLLILDVMMPGLDGW 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A PV L+ +ED+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 80 EVLRMVRSAGHEIPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 139 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q+ + DL V+L + G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 140 GSPTQTTVKISDLEVDLLKRRAVRAGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 199 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V + +LR K+ + K I TV G GY++ Sbjct: 200 DMNFDSDTNVIEVAVRRLRAKVDDDFEHK-LIHTVRGMGYMM 240 >gi|157368725|ref|YP_001476714.1| DNA-binding transcriptional regulator BasR [Serratia proteamaculans 568] gi|157320489|gb|ABV39586.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 220 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD+ L + L L E + + L ++ IILDLGL D+ G Sbjct: 1 MKLLIVEDDELLQQGLALALAGEGYACDCAATAAEANALLLTSQYSMIILDLGLPDMDGA 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R ++ PV IL+ ++ED+V GL +GADDY+ KPF EL AR+RA++RR + Sbjct: 61 SLLRQWRRQQVELPVLILTARDALEDRVDGLDAGADDYLVKPFALVELQARVRALIRRYQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ +L+ DL +NL ++ V VQ + +T KE+ ++ L +R T+ +E+ LY Sbjct: 121 GHSDNLMQLDDLQLNLSSQQVYVQQQPVEVTPKEFAILSRLMMRAGQTVNRELLQQDLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D+ ++V I LR+KL GK+ I TV G GY L ++ Sbjct: 181 WQDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRLESSS 220 >gi|182438316|ref|YP_001826035.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466832|dbj|BAG21352.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 229 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 224 >gi|146305829|ref|YP_001186294.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145574030|gb|ABP83562.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 232 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 129/231 (55%), Gaps = 17/231 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ LA + +L+ + + LGE G+E D ++LD+ L D+ GF Sbjct: 7 RILIVEDDRTLATQLGELLRGQGYATSACHLGEAGLETALREAPDLLLLDVMLPDVNGFS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR LR + TPV +L+ + E+++RGL+ GADDY+ KPFN EL RI A++RR+R Sbjct: 67 VLRRLREQQ-QTPVIMLTACGAEEERIRGLRHGADDYLPKPFNITELQLRIDAVLRRTRP 125 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK--- 171 G Q L V +L ++ A+ V G + LT +++++ LL + L+K Sbjct: 126 QETARGGQPQQLQVD-ELHLDRHAQLARVAGCDLALTPLQFRLLWLLVSHRGEALSKPYL 184 Query: 172 -EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 M L Y D + +D+ + ++R++L+ A G + ++T+ GRGY Sbjct: 185 YRMALEREYSQYD----RSLDMHVSRIRRRLAEAGLGADRLQTLHGRGYAF 231 >gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 239 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G L+++ A+ V G R+ LT +E+ ++ + ++ Sbjct: 126 LARDSRIDAGTLDVAG-LAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >gi|296140929|ref|YP_003648172.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029063|gb|ADG79833.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 224 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 121/218 (55%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ ++ + LK+ + V G +++ + D +ILDLGL DI G V Sbjct: 4 VLVVDDEPAICRTLRINLKARGYEVETATDGRSALQIARERTPDVVILDLGLPDIDGVTV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121 L LR ++PV +LS +DKV L +GADDY++KPF +E +AR+RA VRR+ Sbjct: 64 LSKLR-EFCASPVIVLSARHGSDDKVESLDAGADDYVTKPFGMDEFLARVRAQVRRTGLV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + +VT VN +A+TV G + LT E++++++L + ++++ L+ ++ Sbjct: 123 DAPAPVVTDAFEVNFEARTVTRDGKPVRLTPTEWKIVDVLVRNADRLVSQQTLLHEVWGP 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + V++ +LR+KL Y T G GY Sbjct: 183 SYSRETNYLRVYLAQLRRKLEPDPAHPRYFVTEPGMGY 220 >gi|71906069|ref|YP_283656.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gi|71845690|gb|AAZ45186.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 223 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD +A + L+ + V G + +D +ILDLGL + G Sbjct: 1 MRILIAEDDAIIADGLSRSLRQGGYAVDWAPNGMEADTALVTVSYDLLILDLGLPKLSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR PV IL+ + D+V+GL GADDY+ KPF EL AR+RA+ RRS Sbjct: 61 EVLKRLRARNSQLPVLILTALDGTGDRVKGLDLGADDYMVKPFELPELEARVRALTRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + I G L+ + + ++QG + L+ +E ++E+L R ++K+ ++HL Sbjct: 121 GTSPT-IQCGALTYDQVGRVAQIQGQTLELSAREVGLLEVLLSRMGRLVSKDQLVDHLCG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ G I TV G GY L Sbjct: 180 WGEEVSHNAIEVYVHRLRKKIEP---GGVKIATVRGLGYCL 217 >gi|332535973|ref|ZP_08411666.1| transcriptional activator of copper resistance [Pseudoalteromonas haloplanktis ANT/505] gi|332034654|gb|EGI71212.1| transcriptional activator of copper resistance [Pseudoalteromonas haloplanktis ANT/505] Length = 228 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ ++ L F V + G DG L FD IILD+ L D+ G+ Sbjct: 1 MRLLVVEDEAKTGDYLKQGLSEAGFQVSLARNGLDGHHLAMTELFDVIILDVMLPDVSGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L++LR A TPV LS SI+D+V+GL+ GADDY+ KPF E++AR+R ++R R Sbjct: 61 KILQSLREADNKTPVLFLSARDSIDDRVKGLELGADDYLIKPFAFAEVLARVRTLIR--R 118 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G Q+ +++ DL +++ + ++ G RI L+ KE+ ++ELL R+ L + + + Sbjct: 119 GAVQTVDDILIVADLEMDIPKRKIQRAGKRILLSNKEFSLLELLLRREGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +IDV I +LR K+ + K I TV G GY L Sbjct: 179 VWDMNFDSDTNVIDVAIRRLRAKVDDDFTVK-LIHTVRGMGYKL 221 >gi|290959917|ref|YP_003491099.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260649443|emb|CBG72558.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 7 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 67 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 126 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 223 >gi|219683667|ref|YP_002470050.1| response regulator [Bifidobacterium animalis subsp. lactis AD011] gi|219621317|gb|ACL29474.1| response regulator [Bifidobacterium animalis subsp. lactis AD011] Length = 245 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L + V G + IE+ + D IILD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVGDLEINEDSHDVTRAGQTIDLSSTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLR 222 + I++ +I LRKK+ + G + IET G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIR 239 >gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032] Length = 226 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 126/219 (57%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++DD A++ + ++L +E F+ V VTD G +E + D I+LDL L + G Sbjct: 4 KILVVDDDPAISEMLTIVLSAEGFDTVAVTD-GALAVETASREQPDLILLDLMLPGMNGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R +R + S P+ +L+ + D V GL+SGADDY++KPF +ELVARIRA +R + Sbjct: 63 DICRLIR-QESSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATV 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GDLS+++ A TV+ G I LT E+ ++ L+ + T+E L ++ Sbjct: 122 DEPSEIIEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGY 220 >gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 116/218 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRSEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|320160336|ref|YP_004173560.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea thermophila UNI-1] gi|319994189|dbj|BAJ62960.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea thermophila UNI-1] Length = 229 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D++A+ + L + + V G + ++ D +ILDLGL DI G Sbjct: 6 LRILVVDDERAIRRYLRTSLTALGYEVLEAATGNEALQSAMTEHPDILILDLGLPDIDGV 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119 EV+R +R + P+ ILS +DKV L +GADDY++KPF +EL+ARIR +R R+ Sbjct: 66 EVVRRIREWS-NVPILILSVRDREDDKVVALDAGADDYLTKPFGIKELLARIRVAIRHRT 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ DL V+L + V VQG+R+ LT EY +I++L LT L ++ Sbjct: 125 PDQQDTVFEVEDLRVDLGKREVFVQGNRVALTPTEYDLIKVLVQHAGRVLTHNQLLRQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E ++ V I LR+K+ YI T G GY LRE+ Sbjct: 185 GPAYENEAHLLRVNISNLRRKIEPNPDQPRYILTEPGVGYRLRED 229 >gi|282865224|ref|ZP_06274277.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282560147|gb|EFB65696.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 225 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDAKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ +G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220 >gi|212712838|ref|ZP_03320966.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM 30120] gi|212684530|gb|EEB44058.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM 30120] Length = 224 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L H + + LK V + ++ D ++DLGL D G Sbjct: 1 MRILIVEDNALLRHHLTVQLKELGHQVDSAEGAKEADYFLNESHPDIAVVDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ R +S P+ +L+ S ++KV+ L SGADDY++KPF EELVAR++A++RR+ Sbjct: 61 SMIKRWRSNHVSIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ + ++L K V G + LT EY +IE L ++K+ + LY Sbjct: 121 GLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E IDV + +LRKK+ + I TV G+GY Sbjct: 181 DAELRESHTIDVLMGRLRKKIQQFH-AQEVIVTVRGQGY 218 >gi|167579955|ref|ZP_02372829.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] Length = 257 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 11 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMSGL 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 71 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 131 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 191 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCL 228 >gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 277 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 44 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGLE 103 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 104 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 163 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L V G L+++ A+ V G RI LT +E+ ++ + ++ Sbjct: 164 LARDSRIDAGTLDVAG-LAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 222 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 223 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 269 >gi|56750160|ref|YP_170861.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|56685119|dbj|BAD78341.1| two-component response regulator [Synechococcus elongatus PCC 6301] Length = 229 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D++AL ML+ E ++V V G+ G +L +D +ILD L + G Sbjct: 1 MRILLVDDEEALTAPPHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R++R PV L+ +++D+V+GL +GADDY+ KPF +EL+AR+RA++RRS Sbjct: 61 DLCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRSP 120 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + GDL ++ + Q RI L+ KE Q++ +L ++ + Sbjct: 121 RQETSEAPRLAGGDLELDTPNQLAYRQARRIELSEKETQLLAVLMQHPGQLVSHQELQAQ 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + P ++ I LR+KL A G I +V+G+GY Sbjct: 181 VWGSANPPSSNVLAAQIRLLRRKL-EAPGETPLIFSVYGKGY 221 >gi|148547536|ref|YP_001267638.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148511594|gb|ABQ78454.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 233 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L+EDD AL+ I L+ +F+V V G+ ++ + D +ILDL L I G ++ Sbjct: 4 IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGLQL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RRS + Sbjct: 64 CRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 123 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 LI+ G L ++L +TV +G + L+ EY ++ +L+ + ++ L L Sbjct: 124 EPRLENDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQL 183 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G D + +DV I KLR+K + AG I+TVWG+GY+ Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 226 >gi|241665358|ref|YP_002983717.1| transcriptional regulator [Ralstonia pickettii 12D] gi|240867385|gb|ACS65045.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 279 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 80/242 (33%), Positives = 125/242 (51%), Gaps = 17/242 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE----------FDAII 49 MR+LL+EDD + S+ L+ + F + +V D GE + FD ++ Sbjct: 36 MRVLLVEDDDMIGDSVRKGLRHDGFTIDWVRD-GEAALHAVTAPGAGGAEAGGTLFDLML 94 Query: 50 LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109 LDLGL G EV+R LR I P+ IL+ ++ D+V GL +GADDY+ KPF+ +EL Sbjct: 95 LDLGLPKRDGLEVVRELRQRGIVIPILILTARDAVADRVAGLNAGADDYLVKPFDLQELA 154 Query: 110 ARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 AR+ A++RR G A L+ GD+ +N + V G + L+G+E+ ++ L R Sbjct: 155 ARMHALLRRQGGRADPLLRHGDVVLNPVTREVLRDGVPVKLSGREFAVLHALLARPGKVW 214 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + ++LY +E ++V+I LRKKL G + I+ + G GYV+ Sbjct: 215 SIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHLIQNIRGVGYVIPRETSASP 269 Query: 230 CE 231 E Sbjct: 270 AE 271 >gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 233 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 3/230 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD AL + L+ E + V G++ + E+D I+LD+ L G E Sbjct: 4 RILVVEDDHALVSLLTHNLEREGYETGVAMDGDEAWRKIQSGEWDVILLDVMLPHRDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R LR K TPV +L+ D+V GL+ GADDY++KPF+ EL+ARI+ I+RR Sbjct: 64 ICRQLRQEKNYTPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVRELMARIKVILRRRNL 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I G + + + V ++G ++ LT KE++++ LL K L ++ L L Sbjct: 124 DLYEGKPEIEAGPILIRPENYEVFLKGQKVDLTRKEFELLTLLVQNKGRVLKRDYLLQRL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +D D + +++DV + KLR+KL++ IETV G GY E +E Sbjct: 184 WDYGDTVKTRVLDVHVSKLREKLASYGLKGGGIETVRGIGYKFEEKGYEE 233 >gi|229017310|ref|ZP_04174214.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] gi|229023487|ref|ZP_04179983.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228737755|gb|EEL88255.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228744011|gb|EEL94109.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] Length = 232 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + +LD+ L I GF+V Sbjct: 7 ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILSEQTVNVALLDVMLPGIDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL+ARI++++RR H Sbjct: 67 CKAIREENKKMGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELIARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 EEKTNTITSGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYVWKETIR 232 >gi|258512880|ref|YP_003186314.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479606|gb|ACV59925.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 230 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 128/225 (56%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ +A+ + L+ E + V G + +E + + D I+LD+ L ++ GF+V Sbjct: 5 ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALERWRALQPDLILLDVMLPEVDGFDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 LRA+R A PV IL+ DKV GL+ GADDY++KPF+ ELVAR++A +RR+ Sbjct: 65 LRAIRQAS-GVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASDV 123 Query: 120 -RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R H ++ V DL ++L TV G I LT +E+Q++ +L+ T++ ++ Sbjct: 124 LREHKENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVDQ 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+KL Y+ T G GY +R Sbjct: 184 VWGSDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGYYVR 228 >gi|53718445|ref|YP_107431.1| response regulator protein [Burkholderia pseudomallei K96243] gi|53725056|ref|YP_102132.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|124383485|ref|YP_001028396.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126440297|ref|YP_001057896.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126448259|ref|YP_001079631.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126452671|ref|YP_001065131.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|167718314|ref|ZP_02401550.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167737359|ref|ZP_02410133.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167814484|ref|ZP_02446164.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167822949|ref|ZP_02454420.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167844517|ref|ZP_02470025.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167893045|ref|ZP_02480447.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167901503|ref|ZP_02488708.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167909750|ref|ZP_02496841.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167917773|ref|ZP_02504864.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|254176802|ref|ZP_04883459.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254181603|ref|ZP_04888200.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254187561|ref|ZP_04894073.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254203812|ref|ZP_04910172.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254208790|ref|ZP_04915138.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254261588|ref|ZP_04952642.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254360157|ref|ZP_04976427.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|52208859|emb|CAH34798.1| response regulator protein [Burkholderia pseudomallei K96243] gi|52428479|gb|AAU49072.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|124291505|gb|ABN00774.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126219790|gb|ABN83296.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126226313|gb|ABN89853.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|126241129|gb|ABO04222.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|147745324|gb|EDK52404.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147750666|gb|EDK57735.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148029397|gb|EDK87302.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|157935241|gb|EDO90911.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|160697843|gb|EDP87813.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|184212141|gb|EDU09184.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254220277|gb|EET09661.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 220 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MRILL+EDD+ +A + LK++ V D +DG +A L L +P Sbjct: 1 MRILLVEDDRMIAEGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKR 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLR LR ++ PV IL+ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGIDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G ++S+I G L+++ + V + G + L+ +E+ ++E L R L+K Sbjct: 118 RQSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +Y +E ++V+I LRKKL G + I V G GY++ + A Sbjct: 178 MYGWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 220 >gi|170754525|ref|YP_001780005.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169119737|gb|ACA43573.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 228 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ LK NF+V + GE+GIE + ++ D ++LD+ L + G E Sbjct: 3 KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + +L+ S DKV GL+ GADDYI KPFN EL RI+AI+RR Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S +I G ++L +K + I +T EY ++++ ++ L+ + Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIHKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + KI+DV I +LR K+ +I+TVWG GY Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGY 223 >gi|220918235|ref|YP_002493539.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219956089|gb|ACL66473.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 238 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 R+L +EDD+ LA L+S V +V D G+ G+ + D +ILDL L G Sbjct: 9 FRVLFVEDDERLAALTTRYLESHGHAVTWVAD-GQLGLAEALKGQHDVVILDLMLPRKSG 67 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R LR A++ P+ +L+ + D+V GL++GADDY++KPF+ EL+AR+RA+VRR Sbjct: 68 LEVCRELR-ARLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRRG 126 Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RG + +I GDL ++ + G + LT E+ ++ +L+ R LT+E L+ Sbjct: 127 RGSLGPPREVIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTREQLLD 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + ID I +LR KL + ++TV G GYVL Sbjct: 187 LTKGSADEAFDRSIDAHISRLRHKLGDDPRRPALLKTVRGAGYVL 231 >gi|159028847|emb|CAO90652.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 230 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA + L + V V GE+G + ++D ++LD+ L + G Sbjct: 1 MRILVVEDDMQLAEILREALSERQYVVDVARDGEEGWNWLELGKYDLLVLDVTLPKLSGT 60 Query: 61 EVLRALR--------VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 + + LR A + PV +L+ ++ DK+ GL +GADDY++KPF+ EL+ARI Sbjct: 61 LLCQRLRRAESHHPVSANATVPVLLLTARDTVIDKIDGLDAGADDYVTKPFDLGELMARI 120 Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RA++RR + L+ G L +N G + LT KE+ ++ELL L++ Sbjct: 121 RALIRRGSSTSSVLLSWGGLQLNPSTHEASYNGQLLSLTPKEFALLELLVTHGRRVLSRS 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ D P + + I LR KL + +++IETV G GY L+ Sbjct: 181 GIIERVWSLDDSPAEETVTSHIRGLRHKLKSLGAPEDFIETVHGLGYRLK 230 >gi|16801578|ref|NP_471846.1| hypothetical protein lin2516 [Listeria innocua Clip11262] gi|16415038|emb|CAC97743.1| lin2516 [Listeria innocua Clip11262] Length = 231 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q+ ++ G + V+ V V +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL +A GG+N I+T+WG GY Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGY 227 >gi|327402470|ref|YP_004343308.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327317978|gb|AEA42470.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 224 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 129/229 (56%), Gaps = 19/229 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLTDI 57 M+IL+IED+ LA + L S++ Y+ + ED I+ Y +D ++LDL + Sbjct: 1 MKILIIEDEHELAQDVIGYLTSQD---YLCEHAEDYNQAIDKISAYTYDCVLLDLMIPFG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL L+ K S V I+S +++DK++GLQ GADDY++KPF+ EL ARI +++R Sbjct: 58 DGLEVLEKLKTEKRSDGVIIISAKGALDDKIKGLQLGADDYLAKPFHLSELSARIYSVIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + I DL+V++ +KTV V + LT KE+ ++ L KN ++K H Sbjct: 118 RKQFDNSNTITHDDLTVDMLSKTVTVGSKIVSLTKKEFDLLLLFLGNKNKVISKNALAEH 177 Query: 178 L-------YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L +D D + + L+KKL+ AG +NY++T++G GY Sbjct: 178 LSGDIADMFDNHD-----FVYAHVKNLKKKLTE-AGCENYLKTIYGTGY 220 >gi|313681083|ref|YP_004058822.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153798|gb|ADR37649.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 235 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD +A ++ L + V G G+ + I+LDLGL D+ G E Sbjct: 15 RILIIEDDPEIASLLQAELGEAGYRVDWAPGGMQGLVKLREDPPHLIVLDLGLPDLDGSE 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R + P+ +L+ ++E KV+ L GADDY++KPF+ EL+ARI+ +RR G Sbjct: 75 IARRAK-QHGDVPIIVLTATDAVERKVQLLLGGADDYLTKPFHPAELLARIQVQLRR--G 131 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL + ++ + V G + L+ KE+ ++ELLS R +++ H++ Sbjct: 132 EGGEVRRVGDLEIEVETRRVRAGGREVALSPKEFALLELLSSRPGRVFSRDEIARHIWGK 191 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E ++DV + LR KL AG Y+ TV G GY LR+ A Sbjct: 192 PLETESNVVDVHVANLRAKLRE-AGAYGYLRTVRGVGYALRKPA 234 >gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 248 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+A + ++L+ E F+ V G + + + D I+LD+ L + G + Sbjct: 28 KILVVDDDPAIAEMLMIVLQGEGFDTVVVGDGAEAVTAASNEDPDLILLDVMLPSMNGVD 87 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +LS + D V GL+SGADDYI+KPF +ELVAR+RA +RR Sbjct: 88 VCRAIRKTS-GVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQLRRREQ 146 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I GDL +++ V+ G I LT E+ ++ L+ R LT+E L ++ Sbjct: 147 ATGDTIHVGDLVIDVPGHIVKRDGKEIPLTPIEFDLLTQLASRPKQVLTREELLREVWGY 206 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++++V I +LR K+ I+ V G GY + E Sbjct: 207 KQPTDTRVLNVHINRLRIKVEKDHKNPKLIQAVRGVGYKIGE 248 >gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] Length = 256 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+ L+ + L E F V V + G G E +E+D I+LD+ L + GF+ Sbjct: 17 RMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMNGFQ 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR I+TP+ IL+ ++ E+ V+GL+ GADDYI+KPF EL+AR+ A++RR G Sbjct: 77 ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 136 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 HA ++I G L + + V + G I+L KE++++ L+ + LT++ Sbjct: 137 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 196 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N ++ + +DV + LRKKL +I+++ G GY L N Sbjct: 197 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLELDPESA-HIDSIRGVGYKLVVNP 248 >gi|302534786|ref|ZP_07287128.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302443681|gb|EFL15497.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 229 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A +V GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLVIGDLVIDVAGHSVKRDGASIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 224 >gi|289662555|ref|ZP_06484136.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667795|ref|ZP_06488870.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 233 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA +I ++ V G + ++ FD ++LD+GL + G Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++RR+R Sbjct: 61 RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G + A T+ + G I L +EY++ E+L R + K+ N L+ Sbjct: 121 GQASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ I++++ +LR+KL+ A I TV G GY L E Sbjct: 181 FDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220 >gi|229026557|ref|ZP_04182906.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228734734|gb|EEL85379.1| DNA-binding response regulator [Bacillus cereus AH1272] Length = 225 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVCGLTQEGHFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R +R+ K +TP+ I++ S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSEY 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKSGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGDNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 225 >gi|163797997|ref|ZP_02191938.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [alpha proteobacterium BAL199] gi|159176718|gb|EDP61290.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [alpha proteobacterium BAL199] Length = 223 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED + +A ++ + + E+D +ILDL L D G Sbjct: 1 MRILLVEDTEDVAEAVVATFTRHGHAIDHAPSCAAAEDALAVQEYDLVILDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E LRALR A+ + PV +L+ ++D+V L +GADDY+ KPF+ EL AR RA++RR Sbjct: 61 ETLRALRAARRTMPVLVLTARLDVDDRVAALDNGADDYLMKPFDLRELEARARALIRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I G+L+++ +T V G + LT +E+ ++E L + + ++KE + L+ Sbjct: 121 DERSGVIEYGNLTLDAAGRTAAVAGQPLALTRREFGLLEALLVNRGRVMSKERLFDRLFS 180 Query: 181 GRDEPEVKI--IDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DE EV I ++++I +LR+KL A + I T+ G GY Sbjct: 181 F-DETEVGINAVELYIARLRRKL---AASQVSIRTLRGLGY 217 >gi|238792041|ref|ZP_04635677.1| Two-component system response regulator [Yersinia intermedia ATCC 29909] gi|238728672|gb|EEQ20190.1| Two-component system response regulator [Yersinia intermedia ATCC 29909] Length = 227 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + L E FN + G+ GI ++ A+ILD+ L D+ G Sbjct: 1 MKILLVDDDVELGTMLREYLGGEGFNAELVLTGKAGIAAALSGDYTALILDIMLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R K P+ +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 61 DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119 Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H S+I GDL++N ++ E QG LT E+ ++ELL + +TK+ Sbjct: 120 EHPDVSSADDSIISHGDLTLNPSTRSSEWQGKAFDLTASEFNLLELLLRSPDRVVTKDEL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + +DV I +R+KL+ AG K IETV GY +R Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALAGNKLNIETVRSIGYRIR 227 >gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] Length = 233 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + LK E ++ V GE+ + + K D ++LDL L I GFE Sbjct: 5 KILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDGFE 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 V R +R + P+ +L+ D V GL+ GA+DYISKPF+ ELVARIR I+RR Sbjct: 65 VTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRRR 124 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ ++ G LS+++ V V + + LT E+Q++ L +K T+ + Sbjct: 125 TRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQIV 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ + +DV I LRKKL A ++IETV G GY RE A Sbjct: 185 DAVHGENYAVTERSVDVTIAGLRKKLGPCA---DFIETVRGVGYRFREEA 231 >gi|254422112|ref|ZP_05035830.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189601|gb|EDX84565.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 224 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 118/222 (53%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD LA S+ L +E + V V GE G + ++D ++D+ L + G Sbjct: 1 MRLLLIEDDIQLAESLSEALTAEQYIVDVVKDGEAGWSQMQTLDYDLTLMDVTLPYLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR PV +L+ + +DKVRGL +GAD Y+ KPF+ EL+A+IRA++RR Sbjct: 61 GLCQRLRSRGHQLPVLMLTARDTSQDKVRGLDAGADAYMVKPFDLSELLAQIRALLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + L +N + + LT KE+ ++ELL L++ L L+ Sbjct: 121 IPAAIALAYEHLQLNPETYEASYAQQALRLTPKEFSILELLMRNGRRVLSRSFILESLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P+ + + I LR KL A K++IETV G GY L+ Sbjct: 181 LQSPPDEETVKAHIKSLRNKLRAAGAPKSFIETVHGVGYRLQ 222 >gi|94314591|ref|YP_587800.1| DNA-binding response regulator [Cupriavidus metallidurans CH34] gi|93358443|gb|ABF12531.1| DNA-binding response regulator in two-component regulatory system with CopS [Cupriavidus metallidurans CH34] Length = 228 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V + G DG + +D +ILD+ L DI G+ Sbjct: 1 MKLLVVEDETKTGEYLRQGLTEAGFIVDLVHSGLDGQHMALNESYDLLILDVMLPDIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R A PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 RILQNIRAAGNPVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I DL ++L + G RI LTGKE+ ++ELL+ R+ L + + + ++ Sbjct: 121 AQAPVDRIQIADLVLDLARRRATRAGRRIVLTGKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I+TV G GYVL Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDDFDDK-LIQTVRGMGYVL 221 >gi|309784349|ref|ZP_07678988.1| transcriptional regulatory protein basR/pmrA [Shigella dysenteriae 1617] gi|308927856|gb|EFP73324.1| transcriptional regulatory protein basR/pmrA [Shigella dysenteriae 1617] Length = 188 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/184 (37%), Positives = 107/184 (58%), Gaps = 5/184 (2%) Query: 44 EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103 + ++LDLGL D G L +R K + PV IL+ ++ DK+ GL GADDY+ KPF Sbjct: 10 HYSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPF 69 Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 EEL ARIRA++RR +S ++ G+L++N+ + V + G + LT KEY ++ L L Sbjct: 70 ALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLML 129 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +E+ N +Y+ +EP ++V I LR K+ GK I TV G GY+L Sbjct: 130 KAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVA 184 Query: 224 NAKD 227 N ++ Sbjct: 185 NEEN 188 >gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei 87.22] gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces scabiei 87.22] Length = 244 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V G D +E Y D +ILD+ + + G Sbjct: 12 RILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKATAYRPDLVILDVQMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 R +R A +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL AR+RA++RRS Sbjct: 72 AARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSTY 131 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + DL ++L + V + LT E+ ++E+ LT+E Sbjct: 132 ATALADTAEADEALSFADLRMDLATREVTRGTRPVELTRTEFTLLEMFMAHPRQVLTREQ 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GYVLR+ + Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 244 >gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 243 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ A+ +++ L E + V G D + + Y D I+LD+ + + G Sbjct: 10 RVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAESYAPDLIVLDIQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 70 AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A ++ DL ++L+ + V R+ LT E+ ++E+ LT+E Sbjct: 130 AAAQGGDVPDDDVLSFADLRMDLNTREVTRGARRVELTRTEFTLLEMFLAHPRQVLTREQ 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GY LR D Sbjct: 190 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRSGGGD 242 >gi|218893871|ref|YP_002442740.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa LESB58] gi|218774099|emb|CAW29915.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa LESB58] Length = 221 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL EDD L I L+ E V +VTD G EFD ++LD+GL G Sbjct: 1 MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTD-GVAAENALVTDEFDLLVLDIGLPRRSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++LR LR TPV +L+ + D+V GL SGADDY++KPF +EL AR+RA+ RR+ Sbjct: 60 LDILRNLRHQGRLTPVLLLTARDKVADRVAGLDSGADDYLTKPFYLDELQARVRALTRRT 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A +V G+L ++ V + G + L +EY ++ LL L++ LY Sbjct: 120 TGRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + E I+V + LR+KL N I TV G GY + + A Sbjct: 180 GWSGDVESNAIEVHVHHLRRKLGN-----QLIRTVRGIGYGIDQPAP 221 >gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 243 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + G D ++ Y D I+LD+ + + G Sbjct: 9 RILVVDDEPAVREALRRSLAFEGYGAQTAVDGLDALDKAASYAPDLIVLDIQMPRMDGLT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 R LR A +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL AR+RA++RRS Sbjct: 69 AARRLRSAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSAY 128 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + GDL ++L + V G + LT E+ ++E+ LT+E Sbjct: 129 AAPAAGGAEPEDALTFGDLRMDLATREVTRAGRPVELTRTEFTLLEMFLAHPRQVLTREQ 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 189 ILKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGESRLVHTVRGVGYVLR 236 >gi|162450706|ref|YP_001613073.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161161288|emb|CAN92593.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 241 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 122/220 (55%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD ++A +E+ L +E + V V + GE G+ L + D II+D+ L + GFE+ Sbjct: 19 VLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGFEL 78 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 LR LR + + PV +LS + DKV GL+ GA+DYI+KPF+ EL+AR++A++RR + Sbjct: 79 LRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAIA 138 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R L GD+ +N + V I LT E+ ++ L+ L++E ++ Sbjct: 139 RADGAQL-RAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKVW 197 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ID FI +LR KL A ++ TV G GY Sbjct: 198 GPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGY 237 >gi|326383367|ref|ZP_08205054.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] gi|326197773|gb|EGD54960.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] Length = 224 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL++DD A+A ++ L +E + V G G++ FD ++LD+ + G+ Sbjct: 1 MRVLLVDDDPAIAETVRRTLVAEGWVVDTATDGLTGLQKALSEPFDVVVLDIMMPGRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR A++ TPV +L+ D+ GADDY++KP++ LVAR+RA+ RR Sbjct: 61 EVVRDLRRAQVWTPVLMLTAKDGEYDQADAFDFGADDYLTKPYSAVVLVARLRALARRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G LS++ A V+ + LT +E+ ++E L K +TK ++ ++D Sbjct: 121 PERPAVMTAGSLSLDPSAHVVKRGDTELSLTRREFALLEFLMRNKGQAVTKTQIVDSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++V+I LRK++ G K+ I+TV G GY L ++ Sbjct: 181 VNYTGDENVVEVYISYLRKRIDAPFGCKS-IQTVRGVGYRLDDDG 224 >gi|257877070|ref|ZP_05656723.1| two component transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811236|gb|EEV40056.1| two component transcriptional regulator [Enterococcus casseliflavus EC20] Length = 228 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 137/233 (58%), Gaps = 8/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL +ED+ ++A ++ +LK ++++V + GE G++ +D ++LD+ L I G Sbjct: 1 MRILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDLLVLDIMLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR I TP+ +L+ S ++DKV GL +GADDY++KPF +EL+ARIR++ RR Sbjct: 61 TLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRRKD 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + G++ + + + +++ L+ KE +++EL R L+KE +N ++ Sbjct: 121 LDYQEDQLAFGNVVLARNELQLATTTNQVVLSPKEMKLMELFLSRPKVILSKETIINKIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVLRENAKDETC 230 + E +++++ LRKKL+ A G I T+ GY+L+ +K+ C Sbjct: 181 GFDPDVEENRVEIYVSLLRKKLTLLEADIG---IRTIRNAGYILQ--SKEPPC 228 >gi|241895290|ref|ZP_04782586.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241871596|gb|EER75347.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 229 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 130/225 (57%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ +K+E + + G++ + + + IILD+ + ++ G Sbjct: 1 MKILIVDDDHEIAELLEIYVKNEGYEPVIASDGKEALTKIRTNPDIGLIILDIMMPEMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVL+ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+RA++RR+ Sbjct: 61 TEVLKEVRKDN-PVPILLLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRA 119 Query: 120 R-GHAQS---LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G AQ+ ++ G L++N D+ V G I+LT E+ ++ LL+ N + + Sbjct: 120 QNGLAQATPEVLDVGPLTINKDSHEVRTADGVDINLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR KL +A GG ++TVWG GY Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKLEDATGGNQVVQTVWGVGY 224 >gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4] gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4] Length = 240 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ + F V G +G++ + + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L+ LR + PV L+ ++EDK+ GL GADDY++KPF+ EE+V R+R I+RR Sbjct: 74 LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGK 133 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + I D+ ++ D + V G + L+ E+ ++ + T L+K L+H Sbjct: 134 VSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ EV +++ ++ LR+K+ G I T+ G GYV+RE Sbjct: 194 VWNYDFGGEVGVVESYVSYLRRKVDT--GETPLIHTLRGVGYVMRE 237 >gi|254410123|ref|ZP_05023903.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183159|gb|EDX78143.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 222 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVT-DLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+ ED+ +A +E L+++ F V D GE +++ +EFD +I+DLGL G Sbjct: 3 RILIAEDEPRIASFLEKGLRAKGFTTSVAIDAGET-LDMALSHEFDLLIMDLGLPGKDGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +VL LR P+ IL+ I DKV GL+ GADDY++KPF EEL+AR+R +R + Sbjct: 62 QVLEELRGQGEQIPIIILTARDDIRDKVAGLEGGADDYMTKPFRFEELLARVRLRLRNNH 121 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + ++ G +S++L + V V+G R+ L+ +E+ + E L +++E L+H Sbjct: 122 LPKTKEEMVLTIGHVSLDLRTRRVRVKGQRVELSAREFTLAETLLRHPGQVMSREQLLSH 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +P I+DV+I LRKKL G + IETV G GY LR Sbjct: 182 VWGYDYDPGSNIVDVYIGYLRKKL-----GSDLIETVRGMGYRLR 221 >gi|254000070|ref|YP_003052133.1| winged helix family two component transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986749|gb|ACT51606.1| two component transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] Length = 221 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD + S++ L+ + V G I ++D ++LD+GL G Sbjct: 1 MRVLLIEDDLMVGESLQEGLRDAAYAVDWIRSGNLAIPAFTHEQYDLLLLDIGLPGKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR + PV +++ +IED++RGL GADDYI KPF EL+AR+RA++RR Sbjct: 61 SILTTLRAMRNPLPVIVITARDAIEDRIRGLDLGADDYIVKPFELSELMARVRAVMRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G L+ G L++N V ++ H L+ +EY ++E L +R L++ +Y Sbjct: 121 GEGMPLLSNGSLTLNPMTHEVLIEPDICHALSKREYALLEALLIRPGAILSRSELETKVY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E I+ + LRKKL N I+ + G G+++ +N Sbjct: 181 GWGEEVESNAIEFLLHSLRKKLGNTT-----IKNIRGVGWMISKNG 221 >gi|238022830|ref|ZP_04603256.1| hypothetical protein GCWU000324_02747 [Kingella oralis ATCC 51147] gi|237866033|gb|EEP67169.1| hypothetical protein GCWU000324_02747 [Kingella oralis ATCC 51147] Length = 222 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +A ++ LK + + V + G +D I+LDLGL G Sbjct: 1 MRILLVEDDSMIAQAVVGSLKDDGYAVDWVNNGNTAETTLAGQNYDIILLDLGLPGQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R + +TP+ IL+ I+ ++ GL GADDYI KPF EL ARIRAI+RR Sbjct: 61 QVLQHTRALRNATPILILTARDDIQSRLAGLDGGADDYIIKPFIMAELKARIRAILRRHA 120 Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G A L+ G + +N T+E Q I L+ KE+ +++ L R ++ + + Sbjct: 121 GQASPLLRNGSIQLNPQTYQATLEGQPENILLSQKEFAVLQALISRAGIIHSRSELEDKI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y +E E ID I LRKK+ GK +I+ + G G+++ Sbjct: 181 YGWGEEVESNAIDFLIHSLRKKI-----GKEHIKNIRGVGWMM 218 >gi|225405400|ref|ZP_03760589.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme DSM 15981] gi|225043102|gb|EEG53348.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme DSM 15981] Length = 233 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDKA+ + I L+ E + + + G I + D ++LDLGL D+ G +V Sbjct: 6 ILIVEDDKAIKNLISTTLELEGYRYHTAENGAQAILSAATQQPDIMLLDLGLPDMDGVQV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R P+ ++S S DK+ L +GADDY++KPF+ EEL AR+RA +RR Sbjct: 66 IAKVRTWS-QMPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELTARLRATLRRLQYL 124 Query: 119 -SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +S + T G L+++ A + G+ +HLT EY+++ LL+ LT Sbjct: 125 SASAEMESAVFTNGGLTIDFAAGCASLDGNELHLTPFEYKLLCLLARHVGKVLTHSFITK 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +V + VF+ LRKK+ A YI+T G GY Sbjct: 185 EVWGSSWEGDVASLRVFMASLRKKIEADAAHPQYIQTHVGVGY 227 >gi|118587242|ref|ZP_01544670.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163] gi|118432384|gb|EAV39122.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163] Length = 244 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 131/234 (55%), Gaps = 11/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E ++V G + +E+ D ++LD L +I G E Sbjct: 10 KILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIEGTE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR +R + STPV I++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 70 VLRQIR-SNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQDA 128 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 S H+Q I DL + DA TV G + LT +E+ ++ L+ R LT+ Sbjct: 129 TLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVLTR 188 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E L ++ +V+ +DV + +LR+K+ ++ + T G GY ++ ++ Sbjct: 189 EALLTEVWGFDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGYFIKPDS 242 >gi|300693441|ref|YP_003749414.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czccba [Ralstonia solanacearum PSI07] gi|299075478|emb|CBJ34771.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czcCBA [Ralstonia solanacearum PSI07] Length = 224 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L++ED+ + +LK + +V DL G DG+ +++D I+LD+ L + Sbjct: 1 MRLLIVEDEPKAG---DYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++V+R LR K +TPV L+ + D+++GL+ GADDY+ KPF ELVAR+ I+R Sbjct: 58 DGWQVIRELRRHK-TTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ DL+++ + V G RI LT KEY ++ LL+ R L++ + + Sbjct: 117 RGPMRESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + ++DV I +LR K+ + K I T+ G GYVL A+ Sbjct: 177 VWDVNFDSNTNVVDVAIRRLRAKVDDPFEHK-LIHTLRGMGYVLDTAAR 224 >gi|270308399|ref|YP_003330457.1| DNA-binding response regulator [Dehalococcoides sp. VS] gi|270154291|gb|ACZ62129.1| DNA-binding response regulator [Dehalococcoides sp. VS] Length = 222 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 118/222 (53%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++DDKAL +++ L V G G + EFD +ILD+GL+D G Sbjct: 1 MRILLVDDDKALCQTLKRALGELGHVVEYACDGISGEYFARNGEFDLMILDIGLSDKNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ +L+ ++E KV+ L +GADDY+ KPF EL ARIRA+ RR+ Sbjct: 61 EVCRMVRAEGAALPILMLTAKDTLESKVKSLDAGADDYLCKPFAYSELFARIRALQRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G + N + V+ + I LT E+QM+E N +T+ M HL+ Sbjct: 121 RVMAPVVEIGGIFFNNLSHEVKNGNNEIKLTSAEFQMLEYFITMPNVLITRSMMEEHLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVL 221 ID I KLR+KL +A G I+T+ G GY L Sbjct: 181 AESISASNSIDSLIKKLRQKLGWDARTGP--IKTLRGAGYRL 220 >gi|260437716|ref|ZP_05791532.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292809739|gb|EFF68944.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 235 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 16/229 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59 +IL+++DD +A I L L E F + + GE+ L F+ F D I+LDL L I G Sbjct: 6 KILIVDDDNNIAELISLYLTKECFETLIVNDGENA--LTAFFRFKPDLILLDLMLPGIDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++V R +R +TP+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 64 YQVCREIRREN-NTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRY 122 Query: 120 RGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + I DL +NL +V G + + KE +++ L+ N T Sbjct: 123 TATQSNDTPEKPSGEYIEYPDLIINLSNYSVIYMGKPVDMPPKELELLYFLATSPNQVFT 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E L+H++ + + +DV I +LR+K+ + K I TVWG GY Sbjct: 183 REQLLDHIWGYEYVGDTRTVDVHIKRLREKIHDHE--KWSIGTVWGVGY 229 >gi|269957298|ref|YP_003327087.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305979|gb|ACZ31529.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 226 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA I ++L++E F+ G+ + + + D ++LD+ L G + Sbjct: 4 RVLVVDDDTALAEMIGMVLRTEGFDPVFCADGDGALAAFRSAQPDIVLLDVMLPGKDGTQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 64 VAREIR-AESGVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELVARMRARLRRQED 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL +++ TV G RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PGPERLLVGDLEIDVTGHTVTRAGGRISLTPLEFDLLVALARKPWQVFTREVLLEKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHSADTRLVNVHVQRLRSKVERDPENPEIVLTVRGVGY 220 >gi|126437133|ref|YP_001072824.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126236933|gb|ABO00334.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 248 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 122/231 (52%), Gaps = 17/231 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ LA + L+ E F V G D I + + + D +ILDLGL I G E Sbjct: 16 RALVVDDELPLAEVVASYLEREQFEAVVAGNGVDAIAVARDLDPDVVILDLGLPGIDGLE 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR + V +L+ + D V GL GADDYI+KPF+ ELVARIRA++RR R Sbjct: 76 VCRQLRTFSDAY-VVMLTARDTELDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRI 134 Query: 121 -----GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ G LS+++ A+ V + I LT E+ ++E LS R L++ Sbjct: 135 LQTAAAPAERETAPPRRFGALSIDVAAREVHIDDELILLTRTEFDILEALSARPGIVLSR 194 Query: 172 EMFLNHLYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L + RDEP V ++DV I LR+KL + A YI TV G GY Sbjct: 195 RQLLEII---RDEPWVGNEHLVDVHIGHLRRKLGDDAARPRYIATVRGVGY 242 >gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 233 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 123/231 (53%), Gaps = 17/231 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD +A IE+ LK E + V GED IE+ + D ++LD+ + + G+EV Sbjct: 6 ILIADDDLEIAELIEIHLKKEGYQVVKATDGEDAIEIIQSQAIDLVVLDIMMPKMDGYEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K + P+ LS +S DKV+GL GADDY++KPF ELVAR+ A +RR Sbjct: 66 TRQIR-TKQNMPIIFLSAKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQLRRFLTL 124 Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT----- 170 Q S++ G + ++ + +TV V G RI LT KE+ ++ LL+ + Sbjct: 125 NQPKVEEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENIF 184 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++++ N YD + + V I LRKKL I+T+WG GY Sbjct: 185 QQIWTNDYYDDNN----NTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTF 231 >gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 235 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ + F V G +G++ + + DA+ILD+ + + GF Sbjct: 9 RVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMPGMDGFG 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L+ LR + PV L+ ++EDK+ GL GADDY++KPF+ EE+V R+R I+RR Sbjct: 69 LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGK 128 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + I D+ ++ D + V G + L+ E+ ++ + T L+K L+H Sbjct: 129 VSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ EV +++ ++ LR+K+ G I T+ G GYV+RE Sbjct: 189 VWNYDFGGEVGVVESYVSYLRRKVDT--GETPLIHTLRGVGYVMRE 232 >gi|302386537|ref|YP_003822359.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197165|gb|ADL04736.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 224 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ LA ++ ++K +++ + G DG+ E+D IILD+ L GF Sbjct: 1 MKVLIAEDEIRLADALGQIMKEQHYQADIVYNGTDGLYCGLSGEYDIIILDVMLPGENGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR A I TPV +L+ I DKV GL GADDY++KPF EEL+ARIRA+ RR Sbjct: 61 HVVQKLREAHIQTPVLMLTARDDIHDKVTGLDKGADDYMTKPFVPEELLARIRALSRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GD +NL A + IHL KE++++++L ++KE+ ++ ++ Sbjct: 121 EVIVEEMKYGDFILNLSANDLCCGSKSIHLGYKEFEVLKILMNNSGKIISKEILISKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E ++ +I LRKKL G K I TV GY L E Sbjct: 181 SDSDAEDNNVEAYISFLRKKL-KFIGSKVEIGTVRKVGYRLEE 222 >gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 228 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + L + V G++G+++ D +ILD + D+ G EV Sbjct: 6 ILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDWLMPDMDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A + P+ +L+ + D+V+GL++GADDY+ KPF EEL+AR++A++RR+ Sbjct: 66 CKRLRSAD-NIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRRASPD 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ ++ DLSV+L + V+ I LT KE+ ++ LT++ L ++ Sbjct: 125 SRKVLRFADLSVDLGTREVKRGQRVIDLTAKEFDLLVTFMQHPRQVLTRDQLLQIVWGFD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E ++ V++ LR KL A G I T+ G GYVLRE+ Sbjct: 185 MEVESHVVAVYVGYLRDKL-EAGGESRLIHTLRGVGYVLRES 225 >gi|71275673|ref|ZP_00651958.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71897783|ref|ZP_00680009.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|170729506|ref|YP_001774939.1| response regulator receiver protein [Xylella fastidiosa M12] gi|71163564|gb|EAO13281.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71732338|gb|EAO34392.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|167964299|gb|ACA11309.1| response regulator receiver protein [Xylella fastidiosa M12] Length = 231 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/237 (33%), Positives = 128/237 (54%), Gaps = 12/237 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MR+LLIED+ LA +I ++ + D DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLIEDNADLADAIIRRMRRHG---HAVDWQSDGLAAAGVLRYQRFDLVVLDIGLPSL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L LR +TPV IL+ +IED+V L GADDY+SKPF+ E AR R ++R Sbjct: 58 DGLQLLSELRQRGDTTPVLILTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG+A ++ G + + + + G I L +EY+++E+L R + K+ N Sbjct: 118 RNRGNASEVVRIGGFEFDNASHRIRLHGEPIKLPNREYRLLEILIARLGQIVGKDEIGNS 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKDETCE 231 L++ D I++++ +LR+KL A I TV GY+L E E C+ Sbjct: 178 LFNFDDNAGPNAIELYVARLRRKLEAA---PLRIVTVRRAGYLLEPIVEGRGHEACD 231 >gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes] Length = 233 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 133/234 (56%), Gaps = 11/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ ++ ++ ++ F+V + G G EL + D I+LDL L ++ G EV Sbjct: 1 MLVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 123 AQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ + I+ GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 121 AEIIEEITEDSEARILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233 >gi|119492095|ref|ZP_01623548.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119453305|gb|EAW34470.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 222 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 133/228 (58%), Gaps = 14/228 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDIP 58 RIL+ ED+ +A ++ L+ N ++T + EDG E + +++ +ILDLGL I Sbjct: 3 RILIAEDEPHIAAFLDKKLRD---NGFITTIAEDGYEALNQVRHEQYNLLILDLGLPGIE 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EVL LR P+ IL+ + DKV GL+ GA+DY++KPF+ EEL+ARIR +R+ Sbjct: 60 GTEVLEELRGQGEEIPIIILTARDEVGDKVSGLEGGANDYVTKPFSFEELLARIRLQLRQ 119 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + G++++++ ++TV V R+ L+ E+ +++ L + L+++ L Sbjct: 120 PSTPEPKAERFLKVGNITLDIRSRTVMVGDRRVELSNYEFILLDTLMRHPDQVLSRDQIL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N+++ + I+DV+I LRKKL+ +N IETV GY LR+ Sbjct: 180 NYVWGYDYDSSSNIVDVYIGYLRKKLN-----RNLIETVRSVGYRLRK 222 >gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor A3(2)] gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24] gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans TK24] gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces coelicolor A3(2)] gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 117/223 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTAVDAGLQGGIDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRSEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPPQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K +D+ I LRKKL + A YI TV G G+ +N Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 225 >gi|311070908|ref|YP_003975831.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310871425|gb|ADP34900.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 258 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 131/228 (57%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD++++ ++ L E F+V GE+GI+L + FD I+LDL L + G + Sbjct: 31 QILLVEDDRSISEVVDHYLTKEGFHVVHAFDGEEGIQLFRQNAFDLILLDLMLPKLNGMD 90 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R + PV I+S +K GL GADDYI+KPF+ EL AR++A +RR+ Sbjct: 91 LLKIIR-EQSKIPVLIISAKDGDVEKALGLGFGADDYIAKPFSMIELSARVKAAIRRATQ 149 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +A ++I +L+++++ + + I LT KE+Q+I+LL T+E Sbjct: 150 YAVNEPAETNIIRVHELTLDIENVLITKKDEVIQLTSKEWQIIKLLFTNPKKVFTREQIY 209 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 210 RSVWNEDYYGDENIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 257 >gi|261342454|ref|ZP_05970312.1| QseB protein [Enterobacter cancerogenus ATCC 35316] gi|288315092|gb|EFC54030.1| QseB protein [Enterobacter cancerogenus ATCC 35316] Length = 219 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDDK + I+ L F+V + TD G+ G +DA++LDL L +I G Sbjct: 1 MRILLVEDDKLIGDGIKTGLSKLGFSVDWFTD-GKTGQAALYSAPYDAVVLDLTLPEIDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+LRA R + S PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A+VRRS Sbjct: 60 LEMLRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +S + G + ++ + + G + L KE+ ++ELL L ++ LY Sbjct: 120 HGQTRSELRHGKVMLDPVSLVATLDGDTLVLKPKEFALLELLMRNAGRVLPRKHIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + D+ ++V + LR+KL G +I TV G GY L Sbjct: 180 NWDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216 >gi|78067418|ref|YP_370187.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77968163|gb|ABB09543.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 224 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+S+ F V G+ + +D ++LDLGL G Sbjct: 5 MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR ++ PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 65 DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++SLI G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 125 GRSESLIRHGALTLDPASHQVTLDGVPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL G + I V G GY++ Sbjct: 185 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 220 >gi|89096971|ref|ZP_01169862.1| transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89088351|gb|EAR67461.1| transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 254 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 125/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 ++ILL EDD+ L I +LK + F +V + GED E K +D +ILD + + Sbjct: 31 LKILLAEDDEYLGELIVHLLKKKGFGKADWVME-GEDAYEYAKASYYDVLILDWMMPNGD 89 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G V R LR S + +L+ ++ D+V GL++GADDY+ KPF +EL AR++A+ RR Sbjct: 90 GISVCRRLRREGYSGAILMLTARDAVSDRVEGLEAGADDYLIKPFEIDELAARLKALSRR 149 Query: 119 SRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q +I L +N + T+ + G I LT +EYQ++E+L K LT+EM L+ Sbjct: 150 MLAPLQEDVIQWKSLELNRTSHTLFLNGEEIFLTPREYQLLEMLLRNKGQVLTREMILDR 209 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +K ID I LRKK+ + G + IET+ G GY Sbjct: 210 IWGIESDVSMKTIDATIKLLRKKI-DKHGTNSLIETIRGVGY 250 >gi|254496481|ref|ZP_05109357.1| transcriptional regulatory protein CpxR [Legionella drancourtii LLAP12] gi|254354298|gb|EET12957.1| transcriptional regulatory protein CpxR [Legionella drancourtii LLAP12] Length = 226 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD L + L+ E F+ GE+G++ FDAIILD+ L + GFEV Sbjct: 5 ILIIDDDTELTDLLTQYLEPEGFHAVCVHDGENGVKKALNQPFDAIILDVMLPKLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+A+R + TPV +L+ D++ GL+ GADDY+ KP N ELVAR+RAI+RR++ Sbjct: 65 LKAIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ +I ++ V+ + V + G+ + LT E+ ++E+L +KE + Sbjct: 124 PAARPIIEQHNIVVDCSKRHVTLAGNYLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV I LR KL + G+ ++TV G GY+ Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYLF 224 >gi|170016543|ref|YP_001727462.1| response regulator [Leuconostoc citreum KM20] gi|169803400|gb|ACA82018.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 235 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 132/234 (56%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++V G++ + L + D ++LD L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEKPDLVLLDQMLPEIDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R +K TPV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R + Sbjct: 63 VLRQIR-SKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +Q I GDL+++ A V G I LT +E++++ L+ +T+E Sbjct: 122 VSQHSEEATVHNEDIALGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ +V+ +DV + +LR+K+ + N++ T G GY LR +A+ Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE 235 >gi|163816027|ref|ZP_02207397.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759] gi|158448837|gb|EDP25832.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759] Length = 222 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K L I L E +NV G+ ++ + E+D +I+D+ + + G Sbjct: 1 MRMLVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDFIEMTEYDGVIMDIMIPHVNGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R PV L+ +D VRGL +GA DY++KPF E +AR+R ++R Sbjct: 61 EVLKTIRANNQQVPVLFLTAKGETQDIVRGLDAGASDYMTKPFEFPEFLARLRVMLRTQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++I G L V+++ G I LT +EY ++E L+ +N +T+E ++++ Sbjct: 121 VVNENVIACGSLVVDMNNHKAVRDGRNIDLTVREYAILEYLARNRNIVVTREQIRANIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++DV+I LR+K+ + K I+T+ G GY L Sbjct: 181 IDDDVNSNVVDVYIRYLRRKIDDKYDDK-LIQTIRGVGYKL 220 >gi|26990167|ref|NP_745592.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24985105|gb|AAN69056.1|AE016538_5 transcriptional regulatory protein RstA, putative [Pseudomonas putida KT2440] Length = 279 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L+EDD AL+ I L+ +F+V V G+ ++ + D +ILDL L I G ++ Sbjct: 50 IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGLQL 109 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RRS + Sbjct: 110 CRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 169 Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 LI+ G L ++L +TV +G + L+ EY ++ +L+ + ++ L L Sbjct: 170 EPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQL 229 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G D + +DV I KLR+K + AG I+TVWG+GY+ Sbjct: 230 RGIEFNGTD----RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272 >gi|296448436|ref|ZP_06890320.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296254060|gb|EFH01203.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 230 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 127/231 (54%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL++EDD + + ++K+ +V D DG+ +D I++D L + Sbjct: 4 MRILIVEDD---SEAGAYLVKAFREQGHVADHEVDGLAGYAAASDGRYDVIVVDRMLPRL 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ LR KI TP ILS + ++D+V+GL++G DDY++KP+ EL+AR+ A+ R Sbjct: 61 DGLSLISGLREQKIETPALILSALGQVDDRVKGLRAGGDDYVAKPYAFSELLARVEALAR 120 Query: 118 RSRGHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R G Q V GDL ++ A V G I L +E++++E L +T+ M L Sbjct: 121 RRGGAKQEETVYRVGDLELDRLAHKVTSAGQEIVLQPREFRLLEYLMKHAGQVVTRTMLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++D +P+ +IDV I +LR K+ + + T+ G GY++RE A+ Sbjct: 181 ENVWDYHFDPQTNVIDVHISRLRAKIDKSR-ETPLLHTIRGAGYMIREGAR 230 >gi|269139014|ref|YP_003295715.1| DNA-binding response regulator in two-component regulatory system with CusS [Edwardsiella tarda EIB202] gi|267984675|gb|ACY84504.1| DNA-binding response regulator in two-component regulatory system with CusS [Edwardsiella tarda EIB202] gi|304558949|gb|ADM41613.1| Copper-sensing two-component system response regulator CusR [Edwardsiella tarda FL6-60] Length = 227 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + D G G L +D IILD+ L D+ G+ Sbjct: 1 MKILIVEDEVKTGKYLCKGLTEAGFVVDLADNGLTGYHLAMTAGYDLIILDILLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 E++R LR A P+ +LS + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR S Sbjct: 61 EIVRMLRSANQGLPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL+V L ++ V G RI LTGKE+ ++ + L + + + ++ Sbjct: 121 PPIPESQFHVADLTVELLSRKVTRGGKRITLTGKEFTLVTFFIRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + IDV + +LR K+ K I+TV G GY+L Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDLDFEPK-LIQTVRGVGYLL 221 >gi|227514219|ref|ZP_03944268.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|227087415|gb|EEI22727.1| response regulator [Lactobacillus fermentum ATCC 14931] Length = 245 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 128/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 ++IL+++DDK + +E+ ++E + G D I +L + +ILDL + ++ G Sbjct: 17 VKILIVDDDKEIVQLLEIYARNEGYEPVTAYNGRDAITKLNTMPDISLVILDLMMPEMNG 76 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V+R +R S P+ +LS ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 77 MDVIRQVR-KDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRS 135 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L +N D+ V+ ++G +I LT E+ ++ LL+ N + + Sbjct: 136 ENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGILYLLASHPNRVFSADDI 195 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG+ IETVWG GY Sbjct: 196 FERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGY 240 >gi|197295429|ref|YP_002153970.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|195944908|emb|CAR57517.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 225 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ F+V + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETEHLAVGDLDIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIHTVRGVGYVL 219 >gi|163741296|ref|ZP_02148688.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] gi|161385649|gb|EDQ10026.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] Length = 225 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + L + V + G + + ++D ++ D D+ G Sbjct: 1 MRILLLEDDPEIGTWTVKGLTAAGHVVDWIENGREALLAATTRDYDVLVFDRMTPDLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ LR A+I+TP+ +L+ + ++ED+V GL++GADDY+SKPF EL+ARI A+ RR R Sbjct: 61 SALKTLRSARITTPLILLTALGAVEDRVEGLEAGADDYLSKPFAMTELLARITALGRRGR 120 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + + L ++L ++T G + L KE++++E+L K T+ M L Sbjct: 121 AEAAETATRLSHRGLDLDLLSQTCACNGTTVLLNPKEFRLLEVLMRSKGRIQTRAMLLER 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D +P +++ + +LR K+ G +I+TV G GY+ Sbjct: 181 VWDINFDPSTSVVETHMSRLRNKIEKPF-GLEFIKTVRGSGYMF 223 >gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 231 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 136/236 (57%), Gaps = 17/236 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57 +RIL+++DD+A+ S+ +S +FN Y +L +DG ++L DA++LD+ + + Sbjct: 3 VRILVVDDDRAVRESLR---RSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRL 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 60 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119 Query: 118 RSR---GHAQSLIVT-GDLSVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTK 171 R+ G +S +T DLS LD T EV +G R I LT E+ ++E+L LT+ Sbjct: 120 RTTPDDGAGESAAMTFSDLS--LDPVTREVTRGDRPISLTRTEFSLLEMLIANPRRVLTR 177 Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 178 SRILEEVW-GFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 231 >gi|270261453|ref|ZP_06189726.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044937|gb|EFA18028.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 223 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + ++ V D ED E F + D I+DLGL Sbjct: 1 MRVLVVEDNGLLRHHLSVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIVDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++ P+ +L+ S +DKV L++GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRAHQMKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +IV ++L + + V +I LT EY +IE L ++K+ + Sbjct: 118 RNSGLASQVIVLPPFQIDLSRRELSVGEQQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKKL A + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKL-QAEYPQEVITTVRGQGY 218 >gi|229029708|ref|ZP_04185781.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] gi|228731596|gb|EEL82505.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] Length = 232 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 129/226 (57%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L I GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDLALLDVMLPGIDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I++G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKANTIISGPFSLNVIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 232 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+K L + L E +V + G D +++ EFDA++LD+ L + GF Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ + D +RGL +GADDY++KPF+ EL+AR+RA+ RR+ Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H S +V DL+ LD+ + EV +G R IHLT E+ +++ L ++++ + ++ Sbjct: 121 PHRSSTLVCEDLT--LDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + E +D FI LR+K+ + G I+TV G GY R+ + D+ Sbjct: 179 WGYDRAIENNTLDAFIRLLRQKV-DTQGHPKLIQTVRGFGYSARKLSGDD 227 >gi|71907879|ref|YP_285466.1| two component heavy metal response transcriptional regulator [Dechloromonas aromatica RCB] gi|71847500|gb|AAZ46996.1| two component heavy metal response transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 225 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ + L F V + G DG+ L +D +LD+ L I G+ Sbjct: 1 MKILVVEDEQKTGDYLRQGLMEAGFIVDLARDGFDGLHLALTEAYDLAVLDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +VL+ +R A PV L+ +ED+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QVLQGIRRAGKDMPVLFLTARDDVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L+ DL ++L + V G +I LT KE+ ++E+L R+ L + + + ++ Sbjct: 121 KAKESDLLNAADLELDLMRRRVTRSGKKIDLTSKEFALLEVLLRRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V I +LR K+ + K I TV G GYVL Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDGFEPK-LIRTVRGMGYVL 221 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] gi|151281400|gb|ABR89810.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 3/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA ++ L ++V D GED + ++LD+ L + G Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR K PV IL+ +++D+V GL GADDY++KPF+ E AR+RA++RR + Sbjct: 61 AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ G L +L+A + + L+ +E + E+L R+ +TKE ++ L+ Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 D+ I+V++ + RKKL I TV G GY+L ++ + E E Sbjct: 181 WGDDGGSNAIEVYVHRTRKKLEPY---NINIRTVRGMGYLLEKSGEAERQE 228 >gi|229822256|ref|YP_002883782.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568169|gb|ACQ82020.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 232 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ + L++ + V G G++ D I+LDLGL DI G E Sbjct: 9 RILVVDDDAGLLRALGINLRAHGWEVTTAATGAAGLDAAGRAHPDVILLDLGLPDIGGLE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V+ +R P+ +LS +DKV L +GADDY++KPF EL+AR+RA VRRS Sbjct: 69 VIEGIR-GWSQVPIIVLSARQLGDDKVDALDAGADDYVTKPFAMPELLARLRAAVRRSAL 127 Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +V+ GDL ++L + V G + L+ E+ ++E L + + +E L + Sbjct: 128 VGEPDEPVVSAGDLEIDLARREVRRSGEPVRLSPTEWALLEQLVQHRGRVVGREHLLREV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + V++ +LR+KL + A +I T G GY E Sbjct: 188 WGPTATREGHYLRVYVAQLRRKLEDDAAAPRHILTSPGMGYRFEE 232 >gi|229522924|ref|ZP_04412338.1| transcriptional regulator [Vibrio cholerae TM 11079-80] gi|229340141|gb|EEO05149.1| transcriptional regulator [Vibrio cholerae TM 11079-80] Length = 224 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + H + + DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ +LRKK+ + + I+T G GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221 >gi|225569868|ref|ZP_03778893.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM 15053] gi|225161338|gb|EEG73957.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM 15053] Length = 229 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A + L+ F+V V + GE G++ ++D ILDL L + GF+ Sbjct: 3 KILIVEDEEAIADLEKDYLELSGFHVEVANDGELGLKKALEEDYDLFILDLMLPGVDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQVRNVK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S ++I L ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LTGSAAEVNNIIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRFK 228 >gi|188588940|ref|YP_001919844.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|188499221|gb|ACD52357.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] Length = 229 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 127/225 (56%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED++++ I++ LK +F V + GEDG++ + + D +LD+ L I GF+ Sbjct: 3 RILLVEDEESIRGFIKINLKRNDFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDGFK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ + DK+ GL+ GADDYI KPFN EL+ RI+AI+RR+ Sbjct: 63 VCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTGD 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ ++L ++ + I +T KEY +++L N +++ LN Sbjct: 123 ESQVKENIDKLIREPFIIDLYSQKLFKDNIEIDVTPKEYLLMKLFLKNPNKAFSRDELLN 182 Query: 177 HL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + YD +P K+IDV I +LR K+ + +IET+WG+GY Sbjct: 183 LIWGYDYFGDP--KLIDVNIRRLRSKIEDTPSEPEFIETIWGKGY 225 >gi|160935401|ref|ZP_02082783.1| hypothetical protein CLOBOL_00296 [Clostridium bolteae ATCC BAA-613] gi|158441759|gb|EDP19459.1| hypothetical protein CLOBOL_00296 [Clostridium bolteae ATCC BAA-613] Length = 222 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ +A ++ L+LK E F E+ +E + FD ++LDL L D G+ Sbjct: 3 RILIVEDDRDIAGNLLLLLKKEGFTAVAVGTREESLEQIRRESFDLVLLDLMLPDGNGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V A++ + PV L+ M E V G + GADDYI+KPF ELV+R++ ++RR RG Sbjct: 63 VCTAIK-READIPVIFLTAMGDEESVVTGFELGADDYIAKPFRPLELVSRVKNVLRR-RG 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180 ++S++ GDL V+ TV G I L+ EY++ + R+ LT+ L ++D Sbjct: 121 RSRSVLRAGDLLVDTVKGTVTRDGQEIILSALEYRLFLVFLNRQGEVLTRNRLLEEIWDI 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D + V+I +LR K+ IETV GRGY Sbjct: 181 AGDYVNDNTLTVYIKRLRDKIEKDPAHPEIIETVRGRGY 219 >gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555] gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016] gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM 555] gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 228 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 132/222 (59%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ ++S + V V + G+ Y+ D +ILD+ L +I G + Sbjct: 7 KILIVDDDENICEVIKMYVESAGYEVQVANDGKSAETTFLEYKPDLVILDIMLPNIDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL+ +R TPV +L+ DKV GL+ GADDYI KPF +E++ARI+A++RR Sbjct: 67 VLKWIR-KDYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRRYSV 125 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ L++++++ TV + I + KE++++ L+ KN T+E L ++ Sbjct: 126 DNENKEVLKFEQLTIDINSYTVTYRNEDIKMPPKEFELLYYLANNKNRVFTREQLLCEVW 185 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 G D P + + +DV + +LR+KL GG N+ IETVWG GY Sbjct: 186 -GYDYPGDSRTVDVHVKRLREKLQ---GGPNWQIETVWGVGY 223 >gi|116690638|ref|YP_836261.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|206561168|ref|YP_002231933.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|116648727|gb|ABK09368.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|198037210|emb|CAR53131.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 220 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+S+ F V G+ + +D ++LDLGL G Sbjct: 1 MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR ++ PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 61 DVLRTLRGRGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++SLI G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL G + I V G GY++ Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 216 >gi|291439275|ref|ZP_06578665.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342170|gb|EFE69126.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 229 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 224 >gi|229542414|ref|ZP_04431474.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326834|gb|EEN92509.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 225 Score = 128 bits (321), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL EDD+ + ML+ E V GE + F +D ++LD + + G Sbjct: 1 MKILLAEDDRRFGKLLHHMLEKEKHQVAWEQDGERAYDEAVFGSYDMLVLDWMMPGLEGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R LR + +++ +++D V GL++GADDYI KPF +ELVARI A+ RR Sbjct: 61 EICRKLRRQGFQGGIIMVTARDAVDDVVAGLRAGADDYIVKPFAFDELVARIDALGRRKL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I L+++L++K E G I LT +EYQ+ E KN L +E + H++ Sbjct: 121 KTYQETITCAYLALHLESKQAEANGKMIPLTRQEYQLCEYFMRNKNLVLPREKIIEHIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +D + ++RKK+ + G ++ IETV G GY Sbjct: 181 LDEDISDNALDALVKRVRKKI-DREGERSLIETVRGLGY 218 >gi|317050161|ref|YP_004117809.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316951778|gb|ADU71253.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 220 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + +++ L F+V G+ G + +DA+ILDL L + G Sbjct: 1 MRILLIEDDRIIGDGLKVGLTKLGFSVDWFVSGDAGFQALASAPWDAVILDLSLPERDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ +++ +V+GLQ GADDY+ KPF E+ AR+ A++RR Sbjct: 61 DILRQWRQQGQDVPVLILTARDALDQRVQGLQLGADDYLCKPFALAEVAARLEALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G + ++ + +V + G + L +E ++EL LT+ LY Sbjct: 121 GQLQPELRHGKVVMSPASHSVLLAGEPVTLKSRELALLELFLRNPGRVLTRSQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LRKKL G +I TV G GY L Sbjct: 181 WDDDVSSNAVEVHIHHLRKKL-----GSQFIRTVHGVGYTL 216 >gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 246 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 131/221 (59%), Gaps = 7/221 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L+S F+ V G++ + Y D ++LD+ L + G + Sbjct: 25 KILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFIEYNPDLVLLDIMLPSMDGID 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 VL+ +R + TPV +L+ DKV GL+ GADDY+ KPF +EL+AR++A++RR S Sbjct: 85 VLKWIR-KEHETPVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRRFNS 143 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + L++++D+ TV G I + KE++++ L+ KN T+E L ++ Sbjct: 144 DNVSKEALQFNGLTIDIDSYTVIYNGKEIKMPPKEFELLYYLASNKNRVFTREQLLCEVW 203 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G D P + + +DV I +LR+KL + + IETVWG GY Sbjct: 204 -GYDYPGDSRTVDVHIKRLREKLEEGSNWQ--IETVWGVGY 241 >gi|260185480|ref|ZP_05762954.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] Length = 253 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED+ + + L E V G + ++DA++LD+ L I GF Sbjct: 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDSGDYDAVVLDVMLPGIDGF 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ G +ET+ G GY LR++ Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPF-GVTSLETIRGAGYRLRKDG 246 >gi|77404656|ref|YP_345230.1| two component transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77390306|gb|ABA81489.1| two component transcriptional regulator, winged-helix family [Rhodobacter sphaeroides 2.4.1] Length = 219 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ L +++ + V + + +D +LDL L D G Sbjct: 1 MRILLIEDDEVLGNAVADHVAEAGHTVDRAKCLSEADDSLAVATYDLALLDLMLPDGLGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR R STPV IL+ + I +++ GL +GADDY+ KPF+ EL ARI ++ RR Sbjct: 61 PFLRKRRARGDSTPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ G V+L A+T+ +G + LT +E+ ++E R N L+K L+ Sbjct: 121 GNPNPVVRLGAFEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V++ +LR+KL + + IETV G GY L Sbjct: 181 FEAEIESNAIEVYVSRLRRKLDH-----SVIETVRGLGYRL 216 >gi|83747530|ref|ZP_00944568.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|207721816|ref|YP_002252254.1| response regulator protein [Ralstonia solanacearum MolK2] gi|207744492|ref|YP_002260884.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|83725844|gb|EAP72984.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|206586982|emb|CAQ17566.1| response regulator protein [Ralstonia solanacearum MolK2] gi|206595898|emb|CAQ62825.1| response regulator protein [Ralstonia solanacearum IPO1609] Length = 235 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL+ED++ LA + L +F V + DG+ F EFDA++LDL L Sbjct: 1 MRILLVEDEEELAAWLSRALAQSSF---VVERAADGLAAEAFLASGEFDAVVLDLRLPRK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VL +R TPV IL+ +++++VRGL +GADD+++KPF EL AR+ A++R Sbjct: 58 DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFAMSELEARLMALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG A + G L + K + G + LT +E+ + L + ++K + Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLAGEALSLTPREHAALSALLHKTGQPISKVHLFDK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ + ++V + +LRKKL AG I TV G GY+L A Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGSGVQIVTVRGLGYLLEAEA 222 >gi|326386564|ref|ZP_08208186.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208879|gb|EGD59674.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 188 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 111/181 (61%), Gaps = 4/181 (2%) Query: 44 EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103 +FD ++LD L + G +L+A+R A + TPV +LS + S +D+V GL +GADDY+ KPF Sbjct: 6 QFDVVVLDRMLPGMDGLSLLKAMRAADVDTPVLMLSALGSTDDRVSGLTAGADDYLGKPF 65 Query: 104 NKEELVARIRAIVRRSRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 + EL+AR++A++RR G A++ + GDL ++ + V+ G +I L +E++++E Sbjct: 66 SFAELLARVQALIRRRSGPAKAQETGLRCGDLELDRLTRVVKRGGRKIALQPREFRLLEY 125 Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 L L + +T+ M L ++D +P +IDV I +LR+K+ + + TV G GY Sbjct: 126 LMLHQGEVVTRTMLLEAVWDYHFDPGTNVIDVHISRLRRKIDDGE-AQVLFHTVRGAGYR 184 Query: 221 L 221 L Sbjct: 185 L 185 >gi|313498604|gb|ADR59970.1| Winged helix family two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 279 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L+EDD AL+ I L+ +F+V V G+ ++ + D +ILDL L I G ++ Sbjct: 50 IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGLQL 109 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RRS + Sbjct: 110 CRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 169 Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 LI+ G L ++L +TV +G + L+ EY ++ +L+ + ++ L L Sbjct: 170 EPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQL 229 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G D + +DV I KLR+K + AG I+TVWG+GY+ Sbjct: 230 RGIEFNGTD----RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272 >gi|302560333|ref|ZP_07312675.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477951|gb|EFL41044.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 229 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 224 >gi|301163263|emb|CBW22813.1| putative two component system response regulator [Bacteroides fragilis 638R] Length = 224 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ +A IE LK +V V + G+ G E + FD +ILD+ + + G E Sbjct: 3 KILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWEFIRQEAFDLLILDIIMPKMNGLE 62 Query: 62 VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R R TPV +L+ + + ED V+GL SGADDY+ KPF+ +EL ARI+AI+RR R Sbjct: 63 LCRLYRQQYGYLTPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILRRGR 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V DL +N + + + I LT KEY+++E + L++ L ++D Sbjct: 123 EDSVQQLVCDDLVLNCNTRRARRKEVEIELTVKEYRLLEYFMTHQGMVLSRLTLLKDVWD 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV++ LR K+ + K I TV G GY++ Sbjct: 183 KNFDTNTNVVDVYVNYLRGKI-DKEHDKKLIHTVVGSGYIM 222 >gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 122/219 (55%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED++ LA ++ L +E + V V G D + + + AI+LD+ L + G+ Sbjct: 2 VRILVVEDERRLAEALRAGLGAEGYAVDVAHNGRDALWYAGEHPYAAIVLDIMLPGLNGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR STP+ +L+ +D++ L +GADD++ KPF+ L++R+RA++RR Sbjct: 62 RVCRRLRDQGDSTPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIRRGG 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++ ++T G I LTGKE+ ++ L R +TK L++L+D Sbjct: 122 ATRPGVLKLGDLELDQASRTCRRGGADITLTGKEFALLAYLMQRPGQVVTKAELLDNLWD 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++V + LR+K+ + G I TV G GY Sbjct: 182 FAASATANLVEVHVSALRRKI-DVPFGAETIRTVRGAGY 219 >gi|225159323|ref|ZP_03725621.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224802077|gb|EEG20351.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 263 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 127/231 (54%), Gaps = 12/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLG--EDGIELCKFYE--FDAIILDLGLTDI 57 RIL++EDD S+ L +E F V G D E D +ILD L I Sbjct: 5 RILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWMLPGI 64 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +LR LR PV +L+ +I+D+V+GL++GADDY++KPF EL+AR+RA++R Sbjct: 65 DGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALLR 124 Query: 118 R---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R R Q + DL++NL+ + V G I LT +E+ ++ LSL + ++++ Sbjct: 125 RFTTPREPWQRSV--ADLAINLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQL 182 Query: 175 LNHLY--DGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222 ++ + R P +IDV I +LR+K+ A+ G + + T+ G GY+LR Sbjct: 183 AREIWRENNRATPIDNVIDVHIARLRRKIDEASPGAEKLLHTLRGLGYMLR 233 >gi|23012247|ref|ZP_00052379.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 228 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+ + + L V D F A++LDL L D G Sbjct: 9 MRILVVEDDPILSDGLRVGLSLCGATVDCVATCADADAALGTSPFAAVVLDLMLPDGSGL 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR TPV +L+ ++ D++ GL GADDY+ KPF+ +EL ARIRA+VRR+ Sbjct: 69 DVLRGLRRRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAA 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G + ++L + TV V G +I ++ +E+ ++ L R + +K + LY Sbjct: 129 GRATASLEHGGIRLDLGSLTVTVDGAQIPVSRREFMVLAALMERPSVLRSKAELEDRLYG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E E ++V + LR K+ GK+ IETV G GY +R A Sbjct: 189 WQEEIESNAVEVHVHNLRAKI-----GKHAIETVRGLGYRMRAPA 228 >gi|258543851|ref|ZP_05704085.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis ATCC 15826] gi|258520891|gb|EEV89750.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis ATCC 15826] Length = 229 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+IEDDK +A I L + V G +G+ + + ++D +I+D L ++ G Sbjct: 1 MHVLIIEDDKDVAAYITKGLSESGYVVDAAHTGTEGLSMAQSGQYDILIVDRMLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR +STPV ILS + ++D+V GL +G DDY+ KP+ EL+AR++A+ RR Sbjct: 61 SVIEKLRKDGMSTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQALTRRRG 120 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G Q ++ DL ++ + V G +I+L +E++++E L +T+ M L + Sbjct: 121 GEIQDQMMLEVADLQLDRLKRKVTRSGRKINLQPREFRLLEYLMSNAGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P+ +IDV I +LR K+ I T G GY L Sbjct: 181 WEYHFDPQTNVIDVHISRLRSKIDKDF-DPPLIHTERGAGYSL 222 >gi|116490221|ref|YP_809765.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|290889603|ref|ZP_06552693.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429] gi|116090946|gb|ABJ56100.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] gi|290480801|gb|EFD89435.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429] Length = 237 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 131/234 (55%), Gaps = 11/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E ++V G + +E+ D ++LD L +I G E Sbjct: 3 KILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIEGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR +R + STPV I++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VLRQIR-SNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQDA 121 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 S H+Q I DL + DA TV G + LT +E+ ++ L+ R LT+ Sbjct: 122 TLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVLTR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E L ++ +V+ +DV + +LR+K+ ++ + T G GY ++ ++ Sbjct: 182 EALLTEVWGFDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGYFIKPDS 235 >gi|326383263|ref|ZP_08204951.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198013|gb|EGD55199.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 225 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA + ++LK+E F +V G + + D ++LDL L + G + Sbjct: 4 RILVVDDDAALAEMLTIVLKNEGFEPFVVGDGTQALTAVREVRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ S D V GL+SGADDY+ KPF +ELVARIRA +RR+ Sbjct: 64 VCRVLR-SDSGVPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARIRARLRRTED 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ G + +++ A V G I LT E+ ++ L+ + T+++ L ++ Sbjct: 123 DPAELLAIGPVEIDVPAHKVTRDGVPISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHPADTRLVNVHVQRLRAKVEIDPENPEIVLTVRGVGY 220 >gi|323528722|ref|YP_004230874.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] gi|323385724|gb|ADX57814.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 225 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 133/227 (58%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ ++ L+ ++V + + G DG+ L + ++D I+LD+ L + G+ Sbjct: 1 MRILVIEDEPKTGAYLKKGLEESGYSVDLANDGADGLLLAQEQDYDVIVLDVMLPTMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR A +TPV L+ + D+VRGL+ G DDY+ KPF EL+AR+R + RR Sbjct: 61 AVLKVLR-ATHTTPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ GDL ++++ + V+ RI LT +E+ +++LL R+ L++ ++++D Sbjct: 120 PRESELLAIGDLEMDINRRRVKRGATRIDLTPREFSLLQLLLRRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + +++V I +LR K+ +A K I+TV G GYV+ D Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIQTVRGVGYVIEAKEPD 225 >gi|163857004|ref|YP_001631302.1| two-component response regulatory protein [Bordetella petrii DSM 12804] gi|163260732|emb|CAP43034.1| two-component response regulatory protein [Bordetella petrii] Length = 223 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+L+IEDD L H+++ L + + V ++TD G+ + +D ++LDL L G Sbjct: 1 MRVLVIEDDTTLGHALQEFLADQGYAVDWLTD-GDKVLGALAGQSYDLLLLDLNLPGRSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VLR LR PV I++ +ED+V GL +GADDY++KPF+ EL AR+RA RR Sbjct: 60 LDVLRQLRQDGNQVPVLIVTARDGLEDRVAGLDAGADDYVTKPFDLPELAARVRAFGRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G AQ LI G L+ + + V G R+ L+ +E ++E+L R +TK +N L Sbjct: 120 AGQAQPLIEAGTLTFDTVGREVRANGQRLSLSVRELSVLEMLMARAGRVVTKRQIVNSLS 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V++ +LRK+L G I+TV G GY+L Sbjct: 180 AWDADFSENAVEVYVYRLRKRLE---GTGASIQTVRGFGYML 218 >gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 231 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 137/236 (58%), Gaps = 17/236 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57 +RIL+++DD+A+ S+ +S +FN Y +L +DG ++L DA++LD+ + + Sbjct: 3 VRILVVDDDRAVRESLR---RSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRL 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 60 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119 Query: 118 RSR---GHAQSLIVT-GDLSVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTK 171 R+ G +S +T DL+ LD T EV +G+R I LT E+ ++E+L LT+ Sbjct: 120 RTSPVDGDGESAAMTFSDLT--LDPVTREVTRGNRSISLTRTEFSLLEMLITNPRRVLTR 177 Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 178 SRILEEVW-GFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 231 >gi|186683239|ref|YP_001866435.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465691|gb|ACC81492.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 710 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 119/222 (53%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++E+D+ A ++ L ++ F V +EL + E+D I+LD+ L D G Sbjct: 1 MKLLIVENDQDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR P+ +L+G D++ G ++GADDYI+KP+ EL+ARIRA++RR Sbjct: 61 RLCRQLRTQNQQEPILLLTGKVDPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ + V QG +HLT KEY+++EL + L+ + Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRQIFDRRTLLDRICS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P + + I LR+KL A + IET++G GY L+ Sbjct: 181 IDECPGEEAVTTQIRGLRRKLQMAGLNSDPIETLYGLGYRLK 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 14/119 (11%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDI--P 58 R+L+++DD AL +E L+ F V T L + +F+++ +A DL L D+ P Sbjct: 592 RLLIVDDDPALLSMLEAQLQLWGFQV--TTLADSS----QFWQYLEATTPDLLLLDVAMP 645 Query: 59 GFEVLRALRVAKIST-----PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 GF + +V K PV +LS + + R L +GADDYI KP + +L+ RI Sbjct: 646 GFSGIELCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 704 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVY---VTDLGEDGIELCKFYEFDAIILDLGL--TDI 57 +LLI+DD L ++ + N++++ VTDL L ++ DAIILDL T Sbjct: 468 VLLIDDDTDLIERMQA--NASNWSIHLETVTDLTLARQRL-QYLTPDAIILDLIFPNTTE 524 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L L+ + PV +L+G+ + +V + GA+ ++ KP E+ + ++ Sbjct: 525 SGLTLLAQLKHQFPTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLH 584 Query: 118 R-SRGHAQSLIVTGD 131 R +A+ LIV D Sbjct: 585 RIDTINARLLIVDDD 599 >gi|313113436|ref|ZP_07799025.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624163|gb|EFQ07529.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 263 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L I L+ + V GE +E +D ++LDL L + G Sbjct: 39 MRLLVVEDEHSLREDIARKLRLSGYEVDACADGEAALEALAAERYDLVLLDLNLPKVDGM 98 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + T V ILS S I DKV GL +GA+DY+SKPF+ EL AR+R++ RR Sbjct: 99 QVLRTLRRHDLETCVLILSARSEIADKVEGLDAGANDYLSKPFHLAELEARVRSLTRRKF 158 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G LS N ++ V G + LT KE ++E L L + +++E + H++D Sbjct: 159 IQQDVCLCCGRLSFNTRSRVAAVDGQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVWD 218 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G + I V I LRKKL AA G + I G GY Sbjct: 219 GSVDSFSNSIRVHISALRKKL-RAALGYDPIRNRIGEGY 256 >gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 244 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V V G + ++ D ++LD+ + + G Sbjct: 14 RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGLT 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R LR + PV +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 74 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GDL +NL + V G + LT E+ ++E+ LT+E Sbjct: 134 AVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 193 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 194 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 240 >gi|240139159|ref|YP_002963634.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] gi|240009131|gb|ACS40357.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] Length = 220 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+ + + L V D F A++LDL L D G Sbjct: 1 MRILVVEDDPILSDGLRVGLSLCGATVDCVATCADADAALGTSPFAAVVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR TPV +L+ ++ D++ GL GADDY+ KPF+ +EL ARIRA+VRR+ Sbjct: 61 DVLRGLRRRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G + ++L + TV V G +I ++ +E+ ++ L R + +K + LY Sbjct: 121 GRATASLEHGGIRLDLGSLTVTVDGAQIPVSRREFMVLAALMERPSVLRSKAELEDRLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E E ++V + LR K+ GK+ IETV G GY +R A Sbjct: 181 WQEEIESNAVEVHVHNLRAKI-----GKHAIETVRGLGYRMRAPA 220 >gi|257063841|ref|YP_003143513.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256791494|gb|ACV22164.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 234 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 10/227 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ++ ++ + +K E +V G + +E+ D +ILD+ + GFEV Sbjct: 5 ILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVMMEGYNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 A+R IS P+ ILS + DK G + GADDYI+KPF ELV R + +R Sbjct: 65 CSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRNRSPQ 124 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 G S+I GDLS+++D + V V R+ LT KEY ++ L++ R N T++ Sbjct: 125 EAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVVFTRQ 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ ++ VFI KLR+K+ +I T WG GY Sbjct: 185 QILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGY 231 >gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 243 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+ L+ + L E F V V + G G E +E+D I+LD+ L + GF+ Sbjct: 4 RMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMNGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR I+TP+ IL+ ++ E+ V+GL+ GADDYI+KPF EL+AR+ A++RR G Sbjct: 64 ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 123 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 HA ++I G L + + V + G I+L KE++++ L+ + LT++ Sbjct: 124 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +N ++ + +DV + LRKKL +I+++ G GY L N Sbjct: 184 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLE-LDPESVHIDSIRGVGYKLVVNP 235 >gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 233 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+ +DD +A I++ L +E + V + G + +EL +ILD+ + ++ G Sbjct: 4 IQILIADDDLEIAELIKIYLTNEGYQVLIAGNGREAMELIAKESVQLMILDVMMPEMNGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV+RA+R A+ P+ +LS + DK+ GL +GADDY+ KPFN EL+AR+++++RRS Sbjct: 64 EVVRAVR-AEYGIPILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLLRRSI 122 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q +I L ++ + TV V+ I+LT E+ ++ LL+ + E Sbjct: 123 YLNTQLQTAQDQDIIQIHSLKISKKSHTVTVEDRGINLTSTEFDILYLLASHPGQVFSAE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I KLR KL + GG I+TVWG GY Sbjct: 183 AIFEAVWKDRFLESNNTVMVHISKLRDKLESELGGVKLIQTVWGVGY 229 >gi|188583346|ref|YP_001926791.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179346844|gb|ACB82256.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 220 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 118/222 (53%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+ + L V D F AI+LDL L D G Sbjct: 1 MRILVVEDDTILSDGLRAGLGLGGATVDCVATCADAEAALATSAFSAIVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR TPV +L+ ++ D++ GL GADDY+ KPF+ +EL ARIRA+VRR+ Sbjct: 61 DVLRGLRRRNDRTPVVLLTARDAVTDRIAGLDDGADDYLGKPFDLDELSARIRAVVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +L+ G + ++ + V V G + ++ +E ++ L R N +K LY Sbjct: 121 GRAAALLEHGGIRLDPGSLAVTVDGVPVAVSRREVMVLAALMERPNVLRSKVELEERLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++E E ++V + LR K+ GK+ IETV G GY +R Sbjct: 181 WQEEVESNAVEVHVHNLRAKI-----GKHAIETVRGLGYRMR 217 >gi|146300629|ref|YP_001195220.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155047|gb|ABQ05901.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 220 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 125/220 (56%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ + +E L+ E + + + G G EL + + FD I+LD L I G Sbjct: 1 MHILIVEDELGIVQFLEQGLREEGYQITTANDGSKGFELTQNHTFDLILLDWMLPKINGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +A+R+ TP+ L+ ++++ + GL++GA+DYI KPF+ EELV R++ R Sbjct: 61 DLCKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERVKIHFRNKA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+++V+L V I+LT +E++++ L +K T+ L ++D Sbjct: 121 --TDEILTLGNITVDLSKHIVLKNDEEINLTQREFELLTYLIRKKGKVCTRNEILKDVWD 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + +IDVF+ +RKKL N ++YI+T+ G GY+ Sbjct: 179 INFEYDTGVIDVFMNAIRKKL-NLKIEEDYIKTIRGIGYI 217 >gi|62179752|ref|YP_216169.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|73621399|sp|Q57QC3|PHOP_SALCH RecName: Full=Virulence transcriptional regulatory protein phoP gi|62127385|gb|AAX65088.1| response regulator in two-component regulatory system with PhoQ, transcribes genes expressed under low Mg+ concentration (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|219523861|gb|ACL14893.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica] gi|322714222|gb|EFZ05793.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 224 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L H +++ L+ V T+ + + D I+DLGL D G Sbjct: 2 MRVLVVEDNALLRHHLKVQLQDSGHQVDATEDAREADYYLNEHLPDIAIVDLGLPDEDGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R R + IS PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++RR+ Sbjct: 62 SLIRRWRSSDISLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNS 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I V+L + + V I LT EY ++E L ++K+ + LY Sbjct: 122 GLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 182 DAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 221 >gi|307129447|ref|YP_003881463.1| Two-component response regulator [Dickeya dadantii 3937] gi|306526976|gb|ADM96906.1| Two-component response regulator [Dickeya dadantii 3937] Length = 233 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED A I LK +F V V G DG+ ++D ILD+ L + G+ Sbjct: 1 MRLLLVEDQTMAADYISKGLKENDFVVDVAHDGVDGLHYLLTNDYDLAILDVMLPGMSGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L R A TPV L+ +ED+VRGL+ GA+DY+ KPF+ EL+AR+R I+RR Sbjct: 61 KILELARQAGKPTPVMFLTARDEVEDRVRGLELGAEDYLIKPFSFSELLARVRVIMRRQA 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H +S++ +L ++ V G RI LT KE+ ++ LL R L++ + Sbjct: 121 VHMPAVEESVLQISNLQLDFLKHRVSRGGKRIELTQKEFLLLSLLMRRSGEVLSRTVLAE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D +PE +IDV I +LR K+ + K + T+ G GYVL Sbjct: 181 QVWDMNFDPETNVIDVAIRRLRSKIDDDYEVK-LLHTIRGAGYVL 224 >gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis] Length = 245 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L + V G + IE+ + D IILD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLR 222 + I++ +I LRKK+ + G + IET G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIR 239 >gi|332561563|ref|ZP_08415876.1| two component transcriptional regulator, winged-helix family protein [Rhodobacter sphaeroides WS8N] gi|332274065|gb|EGJ19383.1| two component transcriptional regulator, winged-helix family protein [Rhodobacter sphaeroides WS8N] Length = 229 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ L +++ + V + + +D +LDL L D G Sbjct: 11 MRILLIEDDEVLGNAVADHVAEAGHTVDRAKCLSEADDSLAVATYDLALLDLMLPDGLGI 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR R STPV IL+ + I +++ GL +GADDY+ KPF+ EL ARI ++ RR Sbjct: 71 PFLRKRRARGDSTPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYG 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ G V+L A+T+ +G + LT +E+ ++E R N L+K L+ Sbjct: 131 GNPNPVVRLGAFEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V++ +LR+KL ++ IETV G GY L Sbjct: 191 FEAEIESNAIEVYVSRLRRKLDHSV-----IETVRGLGYRL 226 >gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis E1Sol] gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis CH188] gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis E1Sol] gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis CH188] gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF] Length = 236 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ + L+ E + V ++ G++G EL ++D IILD+ L + G E Sbjct: 3 KVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +ALR KI TP+ IL+ DK+ GL+ GADDY++KPF+ E++AR++AI RR + Sbjct: 63 ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ +V G++ V+ V V+ I LT KE++++ RK+ + +E Sbjct: 123 TTTEPLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + +I+DV I LR K+ Y+ TV G GY +E + Sbjct: 183 TLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236 >gi|239930897|ref|ZP_04687850.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 220 >gi|298492568|ref|YP_003722745.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298234486|gb|ADI65622.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 509 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++DD+ + + +L +N+ V V GE EL + +++D I+LD+ L + G Sbjct: 1 MRILLVDDDEIIVEVLTKLLVQQNYVVDVARDGEAAWELVEGFQYDLILLDVMLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR K V +L+ + DK++GL GADDY+ KPFN +EL AR+ A+ RR Sbjct: 61 SFCRRLREQKSPVLVMLLTACDTTTDKLQGLDRGADDYVVKPFNVQELAARVPALTRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +V G L ++ + V Q H + L+ KEY ++EL + + ++ L+ Sbjct: 121 SSPYPTLVCGHLHLDPNLHEVNYQEHLLQLSRKEYLLVELFLRNQKRIYSCRDIIDELWA 180 Query: 181 GRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 EP + + I +R+ L A G N++ETV+G+GY Sbjct: 181 FDAEPPNEWTVRSHITNIRRNLK-AVGADNFLETVYGQGY 219 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL-TDIPGF 60 ++L ++DD + +++ +L+ + + E + + + +ILD+ + + G Sbjct: 376 KVLAVDDDPQILLTVQTLLEPLGVQLTYLTNPDRFWETVPYNQPEFLILDIYMPSGTEGL 435 Query: 61 EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 ++ RA+ P+ LS + +E + GADDY++KP +EL+ RI ++R Sbjct: 436 DLCRAVGQNDDWNWLPILFLSSCTDVETLQKAFVIGADDYLTKPIVPKELLIRISNGLQR 495 >gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 248 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G+D +++ YE D +ILD+ + G EV Sbjct: 22 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMISTYEVDLMILDIMMPKRNGLEV 81 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 82 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 140 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 141 NASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 200 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 201 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 244 >gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 264 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V V G + ++ D ++LD+ + + G Sbjct: 34 RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGLT 93 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R LR + PV +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 94 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 153 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GDL +NL + V G + LT E+ ++E+ LT+E Sbjct: 154 AVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 213 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 214 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 260 >gi|330820559|ref|YP_004349421.1| two component heavy metal response transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327372554|gb|AEA63909.1| two component heavy metal response transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 231 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + ++ L E + V GEDG Y++D ++LD+ L I GF Sbjct: 1 MKVLIVEDEPKVVDYLKSGLSEEGWVVDTATDGEDGAWKAVEYDYDVVVLDVMLPKIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ ++D+VRGL+ GADDY++KPF+ EL+ R+RA+ RR+R Sbjct: 61 GVLRALRAQK-DTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L ++ G R+ LT +E+Q++ +L+ R+ L+K ++D Sbjct: 120 VQESTLISIGDLRVDLISRRATRNGIRLDLTAQEFQLLGVLARRRGEVLSKTTITELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++ I +LR KL K + T+ G GYVL Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFSDK-LLHTIRGMGYVL 219 >gi|307331346|ref|ZP_07610467.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|297159902|gb|ADI09614.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] gi|306883024|gb|EFN14089.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFRETKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220 >gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 229 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 136/236 (57%), Gaps = 17/236 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRIL+++DD+A+ S+ +S +FN Y +L DG+E + DA++LD+ + + Sbjct: 1 MRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGLEALEMIASDRPDALVLDVMMPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 58 DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 117 Query: 118 RSRG---HAQSLIVT-GDLSVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTK 171 R++ A+S+ + DL+ LD T EV +G R I LT E+ ++E+L LT+ Sbjct: 118 RTKPDDEDAESVAMKFSDLT--LDPVTREVTRGQRQISLTRTEFALLEMLIANPRRVLTR 175 Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 176 SRILEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 229 >gi|294665023|ref|ZP_06730331.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605214|gb|EFF48557.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 233 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED+ LA +I ++ + D DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++R Sbjct: 58 DGLRVLAGMRERGDTTPVLVLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG A ++ G + A T+ + G I L +EY++ E+L R + K+ N Sbjct: 118 RNRGQASEVVQIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNG 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ D+ I++++ +LR+KL+ A I TV G GY L E Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220 >gi|325261172|ref|ZP_08127910.1| DNA-binding response regulator [Clostridium sp. D5] gi|324032626|gb|EGB93903.1| DNA-binding response regulator [Clostridium sp. D5] Length = 230 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++++A + L+ +F V V + GE G +FD IILDL L + GFE Sbjct: 4 KILIIEDEESIADLEKDYLELSDFEVSVANDGEIGRRKALEEDFDLIILDLMLPGVDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 64 ICRQVRDQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 123 LIGSNVEENEIIEIRGLKIDTTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYTKEELF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 183 QEIWDMESIGDIATVTVHIKKIREKVEYDTSHPQYIETIWGVGYRFK 229 >gi|302036900|ref|YP_003797222.1| transcriptional regulatory protein CusR [Candidatus Nitrospira defluvii] gi|300604964|emb|CBK41297.1| Transcriptional regulatory protein CusR [Candidatus Nitrospira defluvii] Length = 227 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA I LK E + V V GE G EL +D IILD+ L + G Sbjct: 1 MRILLVEDDADLAQFIRKGLKEERYAVDVASNGEQGFELGIANPYDLIILDIMLPVLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR ++ PV +L+ +++DKV GL GADDY++KPF EL+AR RA++RR Sbjct: 61 SLCRRLRSTGVTAPVLLLTARDTVQDKVSGLDLGADDYLTKPFAFAELLARARALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + DL ++ V G+ I LT KEY ++E L KN LT+ + H++D Sbjct: 121 PQLQARLTAADLELDPATHRVCRGGNEIALTNKEYALLEFLLRNKNRVLTRTAIIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P I+D I LR K+ I TV G GY+L + Sbjct: 181 ISYDPMTNIVDAHIRSLRAKMDRDF-SPALITTVRGAGYMLED 222 >gi|239930478|ref|ZP_04687431.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438839|ref|ZP_06578229.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341734|gb|EFE68690.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++ + ++ ML+ E F V V G DG++ + D ++LDL L +PG EV Sbjct: 1 MLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R LR + + PV +++ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 61 CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + G + +++D V V G ++ L KE+ ++E+L LT+ ++ ++ Sbjct: 120 EEAAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + K +DV + +LR K+ G Y+ TV G GY Sbjct: 180 GADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219 >gi|194292202|ref|YP_002008109.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czccba [Cupriavidus taiwanensis LMG 19424] gi|193226106|emb|CAQ72053.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czcCBA [Cupriavidus taiwanensis LMG 19424] Length = 229 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F V + G DG+ + + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + TPV L+ + D+++GL+ GADDY+ KPF ELV RIR I+RR Sbjct: 61 EVLRELRRER-DTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I DL ++ + V G +I LT KE+ ++ LL+ R+ L++ + + ++D Sbjct: 120 LRESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV I +LR K+ + + I T G GYVL Sbjct: 180 VNFDSNTNVVDVSIRRLRAKVDDPF-PRKLIHTRRGMGYVL 219 >gi|154247105|ref|YP_001418063.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161190|gb|ABS68406.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 223 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L + +DAI+LD+GL + G Sbjct: 1 MRLLVVEDDPELNRQLVEALSDAGYAVDRAYDGEEGQYLGETEPYDAIVLDIGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL + R A TPV IL+ DKV+G +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVLESWRRAGKVTPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G + ++ + V V+G + LT EY+++ L +++ + HLYD Sbjct: 121 GHASSEMTCGPVRLDTRSGRVTVEGTAVKLTSHEYRLLSYLMHHAGRVVSRGELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ +LRKKL + I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLDC-----DVIQTVRGLGYLL 216 >gi|296138775|ref|YP_003646018.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296026909|gb|ADG77679.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 230 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 118/222 (53%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD+A+A + L E ++V V G D + EF +ILDLGL ++ G E Sbjct: 4 RVLLAEDDEAIASPLARALTREGYDVTVAATGTDAVRRALDEEFALLILDLGLPELDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ V +L+ + D V GL +GADDY+ KPF EL+AR RA++RRS Sbjct: 64 VCREVRAARPEVAVLMLTARTDEMDFVVGLDAGADDYVGKPFRMFELMARTRALLRRSAP 123 Query: 122 HAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + V + LDAK V V G + L KE++++ L R L++E L ++ Sbjct: 124 APDTGDVLDAGGIRLDAKARRVTVDGSDVALANKEFELLRFLMERAGQLLSREDILADVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAG--GKNYIETVWGRGY 219 D K +D+ I LR+K+ + G G I TV G G+ Sbjct: 184 GDSDLRGSKTLDMHISWLRRKIGDDTGPHGPRRIVTVRGVGF 225 >gi|269216256|ref|ZP_06160110.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122] gi|269130515|gb|EEZ61593.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122] Length = 230 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++++ + LK E F+V GE+G+ ++D ILD+ L + G+E+ Sbjct: 8 ILIVDDEQSITDFVSYSLKKEGFSVDTAANGEEGLAAAMRKDYDLFILDIMLPGMDGYEL 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R LR A+ ++PV LS + DKV GL+ G DDY++KPF EL+AR+RA++RR R Sbjct: 68 CRRLR-ARTASPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGRLE 126 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I G +++N + + I LT +E++++ L T+E L + Sbjct: 127 DSPTDQSISAGGVTLNEGRHSADGPNGPIDLTPREFELLAALMKVAGKVATREELLREAW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D E K +D I +LR KLS A +N IETV G GY Sbjct: 187 DWEYITETKTVDTHIKRLRDKLSAAGIDQNVIETVRGYGY 226 >gi|218441192|ref|YP_002379521.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173920|gb|ACK72653.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 227 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 124/230 (53%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MRILL+ED+ +A I LK + V DL DG+E ++ E+D IILD+ L I Sbjct: 1 MRILLVEDEPGIAQFINQGLKETGYGV---DLAIDGLEGKRYIESVEYDIIILDIMLPKI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L +R K TPV +L+ SIED+V+GL GADDY+ KPF EL+ARIRA+ R Sbjct: 58 DGLTLLGEIRAKKNVTPVLLLTAKDSIEDRVKGLNGGADDYLVKPFAFSELLARIRALQR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +++ DL +NL + V+ I L+ E++++E L N LT+ Sbjct: 118 RPPLQFSTILQLEDLKMNLVTREVKRGDKIIDLSPLEFKLLEYLLRNANQVLTRTQIGEQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++D ++DV+I LR+K+ + + T+ G GY L+ + Sbjct: 178 VWDLDFYTNSNVVDVYIGYLRRKIDRGFDNQ-LLHTIRGVGYCLKPEGNE 226 >gi|157370255|ref|YP_001478244.1| DNA-binding transcriptional regulator PhoP [Serratia proteamaculans 568] gi|157322019|gb|ABV41116.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 223 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + ++ V D ED E F + D I+DLGL Sbjct: 1 MRVLVVEDNGLLRHHLSVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIVDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++ P+ +L+ S +DKV L++GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRAHQMKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +IV ++L + + V +I LT EY +IE L ++K+ + Sbjct: 118 RNSGLASQVIVLPPFQIDLSRRELSVNEQQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKV-QAEYPQEVITTVRGQGY 218 >gi|329888201|ref|ZP_08266799.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC 11568] gi|328846757|gb|EGF96319.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC 11568] Length = 223 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD A ++ L V G G+ + +D ++D + + G Sbjct: 1 MRILVVEDDAEAATAMVRGLSEAGHEVTHAVDGAFGLLESQKGGYDVYVVDRMMPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R TPV LS + +ED+V GL++G DDY+ KP+ ELVAR+ A+ RR Sbjct: 61 AMVETIRKGGDQTPVLFLSALGEVEDRVTGLKAGGDDYLVKPYALAELVARVEALSRRRE 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q+++ GDL +NL A+TV G I L +E+Q++E L ++T+ M L ++ Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRDGQEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P+ +IDV I +LR K+ K ++TV G GY L Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGF-DKAMLQTVRGAGYRL 221 >gi|293602289|ref|ZP_06684736.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|292819318|gb|EFF78352.1| two component response regulator [Achromobacter piechaudii ATCC 43553] Length = 230 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 13/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 M+IL+IED++ LA EL+ +S N Y+ D+ DG+ +L ++D IILD+GL + Sbjct: 1 MKILVIEDEQKLA---ELLRRSLTDNSYIVDIAMDGVSGLQLAYETQYDLIILDIGLPGL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEVL+ +R + PV +L+ SS+ED+VRGL+ GADDY+ KPF EL AR+ A+ R Sbjct: 58 DGFEVLQRIR-KNDNVPVMMLTSRSSLEDRVRGLEQGADDYLIKPFALSELQARVLALRR 116 Query: 118 RSRGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R+ G ++ + DL ++L + V RI LT KE+ ++ + R+ L++ Sbjct: 117 RAAGSGDTMSGGNILRVADLELDLLRRRVARGNSRIDLTAKEFGLLTFMMRREGEVLSRL 176 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D +++V + +LR K+ + K + TV G GY + Sbjct: 177 VLAEQVWDMNFNSNTNVVEVAVRRLRAKVDDPFDIK-LLHTVRGMGYTI 224 >gi|241668018|ref|ZP_04755596.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876552|ref|ZP_05249262.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842573|gb|EET20987.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 229 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 132/225 (58%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +DDK +A I+ + + G++ + L +D +++D + + G Sbjct: 6 KVLVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPYLDGIS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L+ LR ++TPV ILS + S E+K++GL SG+DDY++KPF+ +EL+ R+ + +R++ Sbjct: 66 LLKILRKQNVTTPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELMVRVNILYKRTKQ 125 Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 AQS +T GD+ ++ A V I L +EY+++ LL KN ++K M L + Sbjct: 126 IAEAQSHKLTCGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D +P+ +++V I +LR KL+ G + I+T+ G GYV++E Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLT-ENGLPDPIKTIRGFGYVIQE 229 >gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX1322] gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8] gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98] gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX1322] gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8] gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98] gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] Length = 236 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ + L+ E + V ++ G++G EL ++D IILD+ L + G E Sbjct: 3 KVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +ALR KI TP+ IL+ DK+ GL+ GADDY++KPF+ E++AR++AI RR + Sbjct: 63 ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ +V G++ V+ V V+ I LT KE++++ RK+ + +E Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + +I+DV I LR K+ Y+ TV G GY +E + Sbjct: 183 TLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236 >gi|227111566|ref|ZP_03825222.1| DNA-binding transcriptional regulator PhoP [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 229 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL++ED+ L H + + + V D D E F D I+DLGL D Sbjct: 1 MRILVVEDNVLLRHHLTVQMNEMGHQV---DAASDAKEADYFLHENMPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++ P+ +L+ +DKV L++GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGMSMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + + I LT EY +IE L K ++KE + Sbjct: 118 RNSGLASQVISLPPFEIDLSRREMMIHSSPIKLTAFEYTIIETLIRNKGKVVSKESLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQAE-APDVITTVRGQGY 218 >gi|187478610|ref|YP_786634.1| two-component response regulator [Bordetella avium 197N] gi|115423196|emb|CAJ49727.1| two-component response regulator [Bordetella avium 197N] Length = 223 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD L H+++ L + + V G+ ++ ++LDL L G Sbjct: 1 MRVLVIEDDTTLGHALQEFLSDQGYAVDWLTEGDKVQGALAGQPYELLLLDLNLPGQSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR PV IL+ ++D+V GL +GADDY++KPF+ EL AR+RA+ RR Sbjct: 61 EVLRQLRQEGNQVPVLILTARDGLDDRVAGLDAGADDYVTKPFDLPELAARVRALGRRRT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ LI G L + + V V G R+ L+ +E ++E+L R +TK +N L Sbjct: 121 GQAQPLIEVGPLVFDTVGREVRVNGQRLSLSVRELSVLEMLMARVGRVITKRQIVNSLSA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V++ +LRK+L G I+TV G GY+L Sbjct: 181 WDADFSENAVEVYVYRLRKRLE---GTGASIQTVRGFGYML 218 >gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 233 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 2/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ I + LK + V GE+ + + D ++LD+ L + GFE Sbjct: 8 RILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAMEGKPDLVVLDVMLPGMDGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR V +L+ DK+ GL+ GADDY+ KPFN EL ARIRA++RR R Sbjct: 68 VCRLLREKLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRRIRK 127 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G I +G ++L V +G + LT +E+ ++ L +++ LN ++ Sbjct: 128 AGLEDEKISSGPFMLDLKGHRVLKKGEELDLTPREFDLMALFMKNPGKAFSRDEILNAVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + K +DV I +LR+K+ + G YIETVWG GY RE Sbjct: 188 GADYVGDPKTVDVHIRRLREKVEDDPGRPEYIETVWGIGYRWREK 232 >gi|258544229|ref|ZP_05704463.1| transcriptional regulator FeuP [Cardiobacterium hominis ATCC 15826] gi|258520543|gb|EEV89402.1| transcriptional regulator FeuP [Cardiobacterium hominis ATCC 15826] Length = 225 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 129/230 (56%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ LA S+ +L+ G + L +DA +LDLGL + G Sbjct: 1 MRILIVEDDRELAQSLANVLQEAGMIAETAHDGNEAAFLGSTETYDAAVLDLGLPGMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + PV IL+G S DK+ G +GADDY++KPF EE+V R+RA++RRSR Sbjct: 61 SLLTHWREQGQTYPVLILTGRSRWSDKLAGFNAGADDYLTKPFLHEEVVLRLRALLRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + + G LS + + G R+ LT +E +++ L + T +++ L H+Y Sbjct: 121 GHADTTLHVGSLSYDTLQARFHLDGRRLTLTAQEERILAYLMHQPGTVVSRGEILEHVYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAKDET 229 +P+ +DV I ++R+KL G + T+ GRG++L E KD+T Sbjct: 181 RDSDPDSNTLDVLISRIRRKL-----GVPLLHTIRGRGFMLAAETPKDDT 225 >gi|219850126|ref|YP_002464559.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544385|gb|ACL26123.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 245 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 128/231 (55%), Gaps = 7/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + +++IED+ +A S+ + L E V V G +++ + D +ILDL L DI G Sbjct: 17 LHVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGM 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR P+ IL+ ++++V+GLQ GADDYI KPF+ +EL+AR+ AI RR+ Sbjct: 77 VVCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRA- 135 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++ + V LS+NL+ + V + G I LT E+ ++E T++ L+ + Sbjct: 136 GISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRV 195 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + I++V I LR+K+ + + I TV+G GY LR + DET Sbjct: 196 WGFTYVGDSNIVEVHISNLREKIGDHE--RKLIRTVYGVGYTLRPD--DET 242 >gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu001] gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu002] gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu003] gi|308371718|ref|ZP_07667231.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu004] gi|308373532|ref|ZP_07667599.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu005] gi|308374053|ref|ZP_07667699.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu006] gi|308375208|ref|ZP_07667966.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu007] gi|308376453|ref|ZP_07668274.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu008] gi|308377474|ref|ZP_07479280.2| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu009] gi|308378680|ref|ZP_07668799.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu010] gi|308379824|ref|ZP_07669054.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu011] gi|308395904|ref|ZP_07669353.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu012] gi|308216603|gb|EFO76002.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu001] gi|308325660|gb|EFP14511.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu002] gi|308331909|gb|EFP20760.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu003] gi|308335696|gb|EFP24547.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu004] gi|308337275|gb|EFP26126.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu005] gi|308343200|gb|EFP32051.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu006] gi|308347069|gb|EFP35920.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu007] gi|308351012|gb|EFP39863.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu008] gi|308355644|gb|EFP44495.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu009] gi|308359599|gb|EFP48450.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu010] gi|308363527|gb|EFP52378.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu011] gi|308367210|gb|EFP56061.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu012] gi|323720956|gb|EGB30021.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CDC1551A] Length = 234 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED+ + + L E V G + ++DA++LD+ L I GF Sbjct: 4 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 64 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 124 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ G + +ET+ G GY LR++ Sbjct: 184 AAYEARSNIVDVYIRYLRDKIDRPFGVTS-LETIRGAGYRLRKDG 227 >gi|52143445|ref|YP_083384.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|51976914|gb|AAU18464.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] Length = 229 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 4 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKTIRKENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I++G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 124 DEKANTIISGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium jeikeium K411] gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium jeikeium K411] Length = 233 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ ++ +++ LK + F+V D G+D + L Y+ DA ILD+ + + GF Sbjct: 7 VKVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR A P L+ +ED++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 67 TLLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVS 126 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + SLI D++++ D V G + L+ E++++ L + L+K L+H Sbjct: 127 SEDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDH 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +++ ++ LR+K+ + I+TV G GYVLR+ Sbjct: 187 VWNYDFGGDGNVVESYVSYLRRKIDKEE--PHLIQTVRGVGYVLRK 230 >gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 234 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + V+ GE+ +E + E D I+LDL L + G E Sbjct: 3 KILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVR-KTFDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSS 121 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A+ S + GDL+++ DA V I LT +E++++ L+ +T+E Sbjct: 122 AAKEAEEQTNSELSIGDLTIHPDAYMVTKHNEAIELTHREFELLHYLAKHIGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + NY+ T G GY LR Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLATRRGVGYYLR 229 >gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 232 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 2/230 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD AL + ++ + F V +G + D ++LD+GL D GF+ Sbjct: 3 RLLVVEDDPALVTGLRYSMEKDGFQVRTAGSVREGWQAFSQDRPDLVVLDVGLPDGTGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +RV TP+ L+ V GL G DDYI+KPF EL++R+RA++RRS Sbjct: 63 LCRQIRVEN-GTPILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALLRRSAD 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180 +V+G ++++ + V G I LT EY+++ LL + TLT+E L+ L+D Sbjct: 122 KPVKTLVSGAVTLDTEEAHVCRNGEEISLTPAEYRLLRLLMQNEGRTLTREQLLDTLWDS 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 G D + + V+I +LR K+ + +I TV G GY + E C Sbjct: 182 GGDFVDENTLSVYIRRLRAKIEDNPSSPVHIHTVRGVGYRWKAEEGGEAC 231 >gi|253988926|ref|YP_003040282.1| two-component response regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780376|emb|CAQ83537.1| two-component response regulator [Photorhabdus asymbiotica] Length = 222 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 10/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED L H ++ L S F V D+ DGI +L + + +ILD+ L + Sbjct: 1 MRLLLVEDHPELLHWLQKALSSTGFAV---DVASDGIVADQLLQTENYALLILDVSLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L LR + PV +L+ + + D+V+GL SGADDY++KPF+ +EL ARIRA++R Sbjct: 58 DGLSLLVRLRKRGQNLPVLLLTAKADVADRVKGLNSGADDYLTKPFDLQELEARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G Q ++ G L V D + G + LT +E ++ L R+ ++K+ Sbjct: 118 RSAGIPQEILTFGSL-VYQDEGYFTLNGEPLALTPRELSVLTTLFHRRGRPVSKQQLFEQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ DE + I++++ ++RKKLS + G I T+ G GY L Sbjct: 177 VFALSDEANPQSIELYVHRVRKKLSGSGVG---ISTLRGLGYRL 217 >gi|218232438|ref|YP_002369894.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228961333|ref|ZP_04122949.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229130349|ref|ZP_04259307.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|218160395|gb|ACK60387.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228653048|gb|EEL08928.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|228798341|gb|EEM45338.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 220 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +I+++++ A I L E + + +G+ + ++D IILD I G E+ R Sbjct: 1 MIKNERSSAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEICR 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 +R+ K +TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS + Q Sbjct: 61 QIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCNQQ 119 Query: 125 ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 KEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 NIVVNPNVVDLYIGYVRKKLK-CEKKERYIQTIHGRGYSMIE 220 >gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] gi|151283163|gb|ABR91573.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 230 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG L +D IILD+ L DI G+ Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPDIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L ALR A S P L+ + D+V+GL+ GADDY+ KPF EL+AR+R ++R R Sbjct: 61 KILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLR--R 118 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G+ L+ DL ++L + G R+ LT KE+ ++E L K L + + + Sbjct: 119 GNPSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D + +IDV I +LR K+ + K I T+ G GYVL + A Sbjct: 179 IWDINFNSDTNVIDVAIRRLRAKMDDDYDPK-LISTIRGVGYVLEDPA 225 >gi|152998427|ref|YP_001343262.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839351|gb|ABR73327.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 222 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+++LA SI + K+ + E F +FD +ILD+ L GF Sbjct: 1 MRMLLIEDNESLADSIRVYFKNLGHPIDWIGSVEKAEASLSFDDFDLLILDINLPGKSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L++LR PV +L+ + ++D+V L GADDY++KPF+ EL AR RA+ RR R Sbjct: 61 QLLQSLRSKGNRIPVLVLTARTEVDDRVSSLDFGADDYLAKPFDFRELAARCRALYRRER 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + I G+L +L A + +V G + L +E Q++EL + LTK+ N LY Sbjct: 121 GGASNEIQCGNLVYDLAAHSAKVNGITLDLRPRELQLLELFLKNLDRVLTKDDISNRLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + I+ + +LRK+L G I+T+ G GY+ N Sbjct: 181 YDEAYTPNAIEQTLTRLRKQLD---GSTLIIKTIRGLGYLAHVN 221 >gi|23501499|ref|NP_697626.1| DNA-binding response regulator [Brucella suis 1330] gi|62289574|ref|YP_221367.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|148560055|ref|YP_001258605.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|161618587|ref|YP_001592474.1| transcriptional activator protein copR [Brucella canis ATCC 23365] gi|225627119|ref|ZP_03785157.1| Transcriptional activator protein copR [Brucella ceti str. Cudo] gi|254688895|ref|ZP_05152149.1| transcriptional activator protein copR [Brucella abortus bv. 6 str. 870] gi|254693376|ref|ZP_05155204.1| transcriptional activator protein copR [Brucella abortus bv. 3 str. Tulya] gi|254697027|ref|ZP_05158855.1| transcriptional activator protein copR [Brucella abortus bv. 2 str. 86/8/59] gi|254701406|ref|ZP_05163234.1| transcriptional activator protein copR [Brucella suis bv. 5 str. 513] gi|254703951|ref|ZP_05165779.1| transcriptional activator protein copR [Brucella suis bv. 3 str. 686] gi|254707671|ref|ZP_05169499.1| transcriptional activator protein copR [Brucella pinnipedialis M163/99/10] gi|254709746|ref|ZP_05171557.1| transcriptional activator protein copR [Brucella pinnipedialis B2/94] gi|254713749|ref|ZP_05175560.1| transcriptional activator protein copR [Brucella ceti M644/93/1] gi|254717193|ref|ZP_05179004.1| transcriptional activator protein copR [Brucella ceti M13/05/1] gi|254718761|ref|ZP_05180572.1| transcriptional activator protein copR [Brucella sp. 83/13] gi|254729926|ref|ZP_05188504.1| transcriptional activator protein copR [Brucella abortus bv. 4 str. 292] gi|256031236|ref|ZP_05444850.1| transcriptional activator protein copR [Brucella pinnipedialis M292/94/1] gi|256060744|ref|ZP_05450908.1| transcriptional activator protein copR [Brucella neotomae 5K33] gi|256159339|ref|ZP_05457129.1| transcriptional activator protein copR [Brucella ceti M490/95/1] gi|256254644|ref|ZP_05460180.1| transcriptional activator protein copR [Brucella ceti B1/94] gi|256257143|ref|ZP_05462679.1| transcriptional activator protein copR [Brucella abortus bv. 9 str. C68] gi|256369051|ref|YP_003106559.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260168372|ref|ZP_05755183.1| DNA-binding response regulator [Brucella sp. F5/99] gi|260566800|ref|ZP_05837270.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260754380|ref|ZP_05866728.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260757599|ref|ZP_05869947.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761425|ref|ZP_05873768.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260883405|ref|ZP_05895019.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261213626|ref|ZP_05927907.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261219009|ref|ZP_05933290.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261221819|ref|ZP_05936100.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261315167|ref|ZP_05954364.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261317277|ref|ZP_05956474.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321491|ref|ZP_05960688.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261324734|ref|ZP_05963931.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261751945|ref|ZP_05995654.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261754603|ref|ZP_05998312.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261757832|ref|ZP_06001541.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|265983739|ref|ZP_06096474.1| two component transcriptional regulator [Brucella sp. 83/13] gi|265988315|ref|ZP_06100872.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265997783|ref|ZP_06110340.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|294851980|ref|ZP_06792653.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297247989|ref|ZP_06931707.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306838737|ref|ZP_07471572.1| DNA-binding response regulator [Brucella sp. NF 2653] gi|306842118|ref|ZP_07474787.1| DNA-binding response regulator [Brucella sp. BO2] gi|306845218|ref|ZP_07477794.1| DNA-binding response regulator [Brucella sp. BO1] gi|23347405|gb|AAN29541.1| DNA-binding response regulator [Brucella suis 1330] gi|62195706|gb|AAX74006.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|148371312|gb|ABQ61291.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|161335398|gb|ABX61703.1| Transcriptional activator protein copR [Brucella canis ATCC 23365] gi|225617954|gb|EEH14998.1| Transcriptional activator protein copR [Brucella ceti str. Cudo] gi|255999211|gb|ACU47610.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260156318|gb|EEW91398.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260667917|gb|EEX54857.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671857|gb|EEX58678.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260674488|gb|EEX61309.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872933|gb|EEX80002.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260915233|gb|EEX82094.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260920403|gb|EEX87056.1| two component transcriptional regulator [Brucella ceti B1/94] gi|260924098|gb|EEX90666.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261294181|gb|EEX97677.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261296500|gb|EEX99996.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300714|gb|EEY04211.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261304193|gb|EEY07690.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261737816|gb|EEY25812.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261741698|gb|EEY29624.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261744356|gb|EEY32282.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262552251|gb|EEZ08241.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|264660512|gb|EEZ30773.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264662331|gb|EEZ32592.1| two component transcriptional regulator [Brucella sp. 83/13] gi|294820569|gb|EFG37568.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297175158|gb|EFH34505.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306274377|gb|EFM56184.1| DNA-binding response regulator [Brucella sp. BO1] gi|306287705|gb|EFM59136.1| DNA-binding response regulator [Brucella sp. BO2] gi|306406224|gb|EFM62468.1| DNA-binding response regulator [Brucella sp. NF 2653] Length = 235 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A +E + + GE G L + +D +++D L G Sbjct: 1 MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR + TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ + RRS Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ GDL ++ A T Q I L +E++++E L +T+ M L +++ Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ + + TV G GY+L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGF-DEPLLHTVRGAGYMLK 222 >gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 235 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 129/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ ++ +++ LK + F+V D G+D + L Y+ DA ILD+ + + GF Sbjct: 9 VKVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR A P L+ +ED++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 69 TLLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVS 128 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + SLI D++++ D V G + L+ E++++ L + L+K L+H Sbjct: 129 SEDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDH 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +++ ++ LR+K+ + I+TV G GYVLR+ Sbjct: 189 VWNYDFGGDGNVVESYVSYLRRKIDKEE--PHLIQTVRGVGYVLRK 232 >gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] Length = 227 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++AL+ + +L E F V D G D + + D ++LD+ L + G E Sbjct: 3 KILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMSGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S P+ +L+ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 VCRKLREVS-SVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 121 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S++ G + +++D V V G I + KE++++E+L +T+ + Sbjct: 122 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV I +LR K+ + Y+ TV G GY Sbjct: 182 VWGADYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGY 223 >gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 242 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++A+ + + L+ E F+V G+ + D ++LD+ L DI GF Sbjct: 18 IRVLVVDDEEAITDLVTMALRYEGFDVRAAHSGQAALTQAALSPPDLLVLDVMLPDIDGF 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR + P L+ + EDKV GL G DDY++KPF EL+AR+RAI+RR+ Sbjct: 78 AVCERLRRSGQGVPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRAG 137 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + + DL ++ + + V G + LT EY+++ L LT+ L+H+ Sbjct: 138 AADGAPTPLRFADLELDPETREVRRAGRHVDLTATEYRLLHYLLANARKVLTRAQLLDHV 197 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++++ ++ LR+K+ + I TV G GYVLR Sbjct: 198 WGHDFGGDARVLETYVSYLRRKIDDVP--PPLIHTVRGVGYVLR 239 >gi|21954779|ref|NP_665764.1| ANL23 [Synechococcus elongatus PCC 7942] gi|81230366|ref|YP_398748.1| response regulator receiver domain-containing protein [Synechococcus elongatus PCC 7942] gi|21913201|gb|AAM81151.1|AF441790_22 ANL23 [Synechococcus elongatus PCC 7942] gi|81170338|gb|ABB58676.1| response regulator receiver domain protein (CheY-like) [Synechococcus elongatus PCC 7942] Length = 224 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 71/212 (33%), Positives = 119/212 (56%), Gaps = 2/212 (0%) Query: 14 HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73 H++ L E ++V G++ E+ + Y + A++LD + G E+ + LR A+ ST Sbjct: 14 HALHKALTQERYSVDWLTNGDEAWEMIQTYPYRALVLDWMVPGCSGLEICQRLRQAQDST 73 Query: 74 PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS 133 PV +L+ ++D V+GL +GADDY+ KPF EL+AR+RA++RRS L+ G L Sbjct: 74 PVLVLTARDGLQDLVQGLDAGADDYLVKPFRLAELLARVRALLRRSPQTQTPLLQVGRLR 133 Query: 134 VNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192 ++ TV+V + + LT +E+Q++E L L+++ L+ L+ EP ++ Sbjct: 134 LDPAQATVQVDDYSPMPLTAREFQLLEALMHHPGQILSRDQLLDQLWPMDAEPSSNVVAA 193 Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + LR+KL+ IETV+G GY LR + Sbjct: 194 QVRLLRRKLATYQADL-LIETVYGFGYRLRPS 224 >gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] Length = 248 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++ LA + L+ E + V G + + + D I+LD+ L D G Sbjct: 17 LRVLVVDDEQMLADLLASALRYEGWEVTTAGSGIAAVRSAQEIDPDVIVLDIMLPDFDGL 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R + PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS Sbjct: 77 EVMRRVRGHSPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + SL+ GDL ++ D+ V I LT E++++ L L+K L+ Sbjct: 137 ASEEKPDSLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILDR 196 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ + I++++I LR+K+ G + I T+ G GYVL+ A Sbjct: 197 VWNYDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVLKPAA 242 >gi|310659563|ref|YP_003937284.1| DNA-binding response regulator in two-component system with yedv [Clostridium sticklandii DSM 519] gi|308826341|emb|CBH22379.1| DNA-binding response regulator in two-component system with YedV [Clostridium sticklandii] Length = 231 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 134/229 (58%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 +IL+IED+ +A ++L L+ E + V ++ G +G++ C Y FD +ILD+ L + G Sbjct: 5 KILIIEDEYNIARFLQLELEHEGYEVGISHDGREGLDKACSDY-FDLLILDVMLPSLNGV 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVLR LR K PV +L+ + DK+ GL GADDY++KPF EEL+ARIR I +R Sbjct: 64 EVLRRLR-QKSDMPVVMLTAKDEMNDKILGLDIGADDYMTKPFAIEELLARIRVIFKRMD 122 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S+ S++ +++++D TV + I LT +E+++++ + KN +T+EM Sbjct: 123 NYKASKPQNDSILRIKGVNLDIDRYTVTYKEKNIDLTKREFELLKYMMQNKNLVITREMI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + ++DV+I LR K+ + G K I T+ G GY +++ Sbjct: 183 LAKVWGYEYMGDTNVVDVYIRYLRSKIDDQFGIK-LIHTIRGVGYQIKD 230 >gi|302381990|ref|YP_003817813.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192618|gb|ADL00190.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 226 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L+ +++ L + V GE+ L +D ++LDLGL I G Sbjct: 1 MRVLLVEDDADLSRQLKMALGDAGYAVDHAADGEEAHFLGDTEPYDVVVLDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R +TPV IL+ + DKV G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 SVLERWRRDGKTTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G L ++ A V G + LT EY+++ + + + +++ + HLYD Sbjct: 121 GIASATLSCGGLRLDPKAARATVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VFI +LRKK+ G + IETV G GY L Sbjct: 181 QDFDRDSNTIEVFIGRLRKKV-----GSDRIETVRGLGYRL 216 >gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] Length = 240 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 15 RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ + Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A+ S + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 135 GSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKIDT--GDKRLLHTLRGVGYVLRE 238 >gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae OXC141] Length = 235 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G E Sbjct: 4 QVLLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR I TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR++G Sbjct: 64 VCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + G L V + V + LT KE++++ L N TLT+E Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234 >gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis V583] gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX0104] gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis HH22] gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis ATCC 29200] gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis R712] gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis S613] gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis V583] gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis] gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX0104] gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis HH22] gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis ATCC 29200] gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis R712] gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis S613] gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus faecalis 62] Length = 236 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ + L+ E + V ++ G++G EL ++D IILD+ L + G E Sbjct: 3 KVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +ALR KI TP+ IL+ DK+ GL+ GADDY++KPF+ E++AR++AI RR + Sbjct: 63 ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ +V G++ V+ V V+ I LT KE++++ RK+ + +E Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + +I+DV I LR K+ Y+ TV G GY +E + Sbjct: 183 TLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236 >gi|330465920|ref|YP_004403663.1| response regulator receiver [Verrucosispora maris AB-18-032] gi|328808891|gb|AEB43063.1| response regulator receiver [Verrucosispora maris AB-18-032] Length = 229 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+SE F GE + + D ++LDL L + G + Sbjct: 4 RVLVVDDDPALAEMLGIVLRSEGFMPSFVADGERALAAFRDNRPDIVLLDLMLPGMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R A+ P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 64 VARAIR-AESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGED 122 Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A L+ G +++++ A TV G + LT E+ ++ L+ + T+E+ L Sbjct: 123 AAPELLTIGPPGNQIAIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + ++++V + +LR K+ I TV G GY Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGY 224 >gi|302551833|ref|ZP_07304175.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469451|gb|EFL32544.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 229 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 224 >gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 115/218 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|169247751|gb|ACA51690.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 271 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 124/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + L+ E + V G + + + DA++LD+ L D+ G Sbjct: 44 LRLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGL 103 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL LR + PV L+ ++ED++ GL +G DDY++KPF+ EE+V R+R ++RRS Sbjct: 104 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 163 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++V GDL+++ ++ V G I LT E++++ L L+K L+ Sbjct: 164 AVSARPDTVLVVGDLTLDEESHEVSRGGQAIRLTATEFELLRCLMRSPRRVLSKAQILDR 223 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +++++I LR+K+ AG I T G GY+L Sbjct: 224 VWSYDFGGQANVVEIYISYLRRKID--AGRAPMIHTRRGAGYLL 265 >gi|26992059|ref|NP_747484.1| two component heavy metal response transcriptional regulator [Pseudomonas putida KT2440] gi|24987198|gb|AAN70948.1|AE016739_1 transcriptional activator CopR [Pseudomonas putida KT2440] Length = 225 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L F V G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGAYLQQGLAEAGFTVDRVLTGTDALQHALSESYDLLILDVMMPGLEGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 EVLR +R A PV L+ ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR + Sbjct: 61 EVLRMVRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGT 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 AQ+ + DL V+L + G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 STAAQTTMKMADLEVDLLKRRATRSGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V I +LR K+ + K I T G GY++ Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFAPK-LIHTARGMGYMM 221 >gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Rv] gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Ra] gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis F11] gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis H37Ra] gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 94_M4241A] gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis GM 1503] gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210] gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207] gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506] gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475] gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium tuberculosis H37Ra] gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis F11] gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis CDC1551A] gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis W-148] gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 4207] Length = 230 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 132/233 (56%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 +RIL+++DD+A+ S+ +S +FN Y +L DG+E DA++LD+ + + Sbjct: 3 VRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRL 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 60 DGLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119 Query: 118 RSRGH--AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R++ A+S+ + DL+++ + V RI LT E+ ++E+L LT+ Sbjct: 120 RTKPEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 179 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 180 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 230 >gi|300783660|ref|YP_003763951.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299793174|gb|ADJ43549.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 237 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ +A + + + E + G+ + + D ++LDL L D+ GF Sbjct: 7 VRLLVVDDEPHIADLVATVARYEGWQAVTAGTGQTALSRAAEFGPDIVVLDLMLPDLDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + PV L+ + D++ GL G DDY+ KPF+ EEL+AR+RA++RRS Sbjct: 67 TVLDRLRAGGNAVPVVFLTAKDATADRIAGLTRGGDDYLVKPFSVEELMARLRAVLRRSA 126 Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEM 173 G A +++ GDL+++ D + V +G R+ LT EY+++ L R LTK Sbjct: 127 GLAHQPEARGAVLRVGDLTLDEDTREVR-RGERLAELTPTEYELLRYLMRRSPAVLTKAQ 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+H+++ ++++ I LR+K+ + G+ I TV G GYV+R+ Sbjct: 186 ILDHVWEYDFGGRSNVVELVISHLRRKV-DTGDGEPLIHTVRGVGYVVRQ 234 >gi|294629682|ref|ZP_06708242.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833015|gb|EFF91364.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 229 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 224 >gi|167761217|ref|ZP_02433344.1| hypothetical protein CLOSCI_03622 [Clostridium scindens ATCC 35704] gi|167660883|gb|EDS05013.1| hypothetical protein CLOSCI_03622 [Clostridium scindens ATCC 35704] Length = 231 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDDK + + I + LK E + +V E+ + L + D IILDLGL D G EV Sbjct: 7 LLIVEDDKYIINFISMTLKKEEYAFFVAKSVEEAVSLFYANQPDLIILDLGLPDGDGMEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++++R P+ ++S +K++ L +GADDY++KPF EL+ARIRA +R++ Sbjct: 67 IKSVREVS-DIPIIVVSARQEEGEKIQALDAGADDYVTKPFYMGELMARIRAGLRKTGTA 125 Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q I+T G L+V+ + + V V+G +HLT EY+++ LL + LT + + Sbjct: 126 RQEEIMTVFSTGSLTVDYEKRKVLVEGEEVHLTPIEYKILLLLIANRGKVLTHNYIIREI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ + + VF+ LR+K+ Y+ T G GY RE Sbjct: 186 WGYAEDIDAGNLRVFMATLRRKIEKDPASPEYVLTEIGVGYRFREK 231 >gi|77465102|ref|YP_354605.1| two component transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77389520|gb|ABA80704.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides 2.4.1] Length = 219 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L +I + +E ++T + ED + +D ++LDL L D G Sbjct: 1 MRILLVEDDPGLGGAIRDQISAEGHAADWMTGV-EDALASVATTAYDLVLLDLNLPDGSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + LR LR K + PV IL+ + +++ GL +GADDY+ KPF+ EL ARI A+ RR Sbjct: 60 LDFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ + G L V++ + ++ + L+ +E+ + E L R + ++K LY Sbjct: 120 AGNPSPRLALGPLEVDIADRRIDGPEGEVTLSQREWAIFEALVKRPGSVVSKTQLEETLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V++ +LRKKL G++ IET G GY L Sbjct: 180 AFDAEVESNTIEVYVSRLRKKL-----GRDRIETRRGMGYRL 216 >gi|255526633|ref|ZP_05393539.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186093|ref|ZP_06854498.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509666|gb|EET86000.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049361|gb|EFG88790.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 227 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 130/220 (59%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ +++ + L+ E + VY + G +EL EF+ IILDL L DI G E Sbjct: 3 KILIVEDEEKISNVQKAYLEKEGYEVYTSTTGLKALELFDSIEFNLIILDLMLPDIQGEE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + +++ S++ED++ GL +GAD+Y+ KPF+ ELVAR+ ++ RR Sbjct: 63 ICKIIR-NKSDVYIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLVS 121 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S++ G+L ++ D++ V+V+G + LT E+ ++ L++ K LT+E ++ ++ Sbjct: 122 NNSSILCFDNGNLEIHKDSRIVKVKGLEVSLTPNEFDILYSLAMNKGKVLTREQLIDRVF 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + +DV I +RKK+ + YI TV GY Sbjct: 182 GMDFEGFDRTVDVHIKNIRKKIEEDSKNPKYILTVTKLGY 221 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] gi|133739760|emb|CAL62811.1| Putative transcriptional regulatory protein TctD [Herminiimonas arsenicoxydans] Length = 229 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 3/231 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA ++ L + V D GED + ++LD+ L + G Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR K PV IL+ +++D+V GL GADDY++KPF+ E AR+RA++RR + Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G L +L+A + + L+ +E + E+L R+ +TKE ++ L+ Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 D+ I+V++ ++RKKL I TV G GY+L ++ + E E Sbjct: 181 WGDDGGSNAIEVYVHRMRKKLEPY---NITIRTVRGMGYLLEKSGEKERSE 228 >gi|330823313|ref|YP_004386616.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|329308685|gb|AEB83100.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 236 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 6/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD ++A + + L E ++V G G+ + + A++LDL L + G E Sbjct: 6 RILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R P+ I S SS ++ GL+ GADDY++KPF+ ELVAR+RA++RRS Sbjct: 66 ICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRSEA 125 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ ++ G LS++ A+ V G + LT +E+ ++ + + ++ L Sbjct: 126 LARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQPGKVFSRLDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 N ++ R + ++ I +LR K+ I TVWGRGY L E+A Sbjct: 186 NQVWGYRHDGYEHTVNTHINRLRIKIERNPADPKRILTVWGRGYKLAEDA 235 >gi|299068876|emb|CBJ40117.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czcCBA [Ralstonia solanacearum CMR15] Length = 224 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L++ED+ + +LK + +V DL G DG+ +++D I+LD+ L + Sbjct: 1 MRLLIVEDEPKAG---DYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++V+R LR K +TPV L+ + D+++GL+ GADDY+ KPF ELVAR+ I+R Sbjct: 58 DGWQVIRELRRRK-TTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ DL+++ + V G RI LT KEY ++ LL+ R L++ + + Sbjct: 117 RGPMRESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + ++DV I +LR K+ + K I T+ G GYVL A+ Sbjct: 177 VWDVNFDSNTNVVDVAIRRLRAKVDDPFEPK-LIHTLRGMGYVLDTVAR 224 >gi|240137869|ref|YP_002962341.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] gi|240007838|gb|ACS39064.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] Length = 220 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+ + L V D F AI+LDL L D G Sbjct: 1 MRILVVEDDTILSDGLRAGLGLGGATVDCVATCADAETALATSAFSAIVLDLMLLDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR TPV +L+ ++ D++ GL GADDY+ KPF+ +EL ARIRA+VRR+ Sbjct: 61 DVLRALRRRNDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +++ G + ++ + V + G + ++ +E ++ L R + +K LY Sbjct: 121 GRAAAILEHGGIRLDPGSLAVTIDGLPVAVSRREVMVLAALMERPDVLRSKSELEERLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E E ++V + LR K+ GK+ IETV G GY +R A Sbjct: 181 WQEEVESNAVEVHVHNLRAKI-----GKHAIETVRGLGYRMRAPA 220 >gi|134279950|ref|ZP_01766662.1| Transcriptional regulatory protein tctD [Burkholderia pseudomallei 305] gi|134249150|gb|EBA49232.1| Transcriptional regulatory protein tctD [Burkholderia pseudomallei 305] Length = 273 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 27 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 87 EVLSRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 147 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 249 >gi|332307619|ref|YP_004435470.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174948|gb|AEE24202.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 229 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED L +S+ L L ++V V G G+ + +++ +ILDL L ++ G Sbjct: 1 MRILLIEDSATLRNSLSLGLDKLGYSVDVAADGTTGLSMALMGDYEIVILDLMLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ALR ++ V ILS S +DKV G+ SGADDY++KPF+ +EL AR+ +++RR Sbjct: 61 AILKALRKRNLNVRVLILSARSQTDDKVSGILSGADDYLTKPFSFDELSARLVSLMRRGP 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 HA I D +NL K++ I LT EY++IE + L ++ +T E +L Sbjct: 121 ATHANDRIEINDFVLNLQTKSLSYHQQDIELTPNEYKIIECMFLNRDRVVTSERLSEYLS 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D I+ + RKK N G I++ G GY Sbjct: 181 GNYDHTSKNAIEAHLSSARKKAKN-IGASLPIKSKRGFGY 219 >gi|296270269|ref|YP_003652901.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093056|gb|ADG89008.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 217 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I L+ E V V G + +E + ++D I+LD L + G Sbjct: 1 MRVLVVEDERVLADAIATGLRREAMAVDVAYDGAEALEKLAYIDYDVIVLDRDLPKVHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + L + + + +L+ ++D+V GLQ GADDY+ KPF ELVAR+RA+ RRS Sbjct: 61 EVAKKLANERCPSRILMLTAAGDVDDRVEGLQLGADDYLPKPFAFAELVARVRALARRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + ++ +TV G I LT KE+ ++E L +++E L+ +D Sbjct: 121 PPLPPVLERAGIRLDPAKRTVTRDGRPISLTRKEFAVLEELMRADGAVVSQEDLLDKAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++ V + LRKKL G IETV G GY L Sbjct: 181 EHIDPFTNVVRVTMMTLRKKL----GDPPIIETVPGVGYRL 217 >gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 245 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 10/236 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D + + + Y+ D I+LD+ + + G Sbjct: 10 RILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYDPDLIVLDIQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 70 AARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ DL ++L + V R+ LT E+ ++E+ LT+E Sbjct: 130 AASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTRE 189 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ EP +DV++ LR+K + A G + TV G GY LR E Sbjct: 190 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRTGGSGE 244 >gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 239 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F VY G ++ + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ + Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A+ + + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 237 >gi|256787359|ref|ZP_05525790.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 220 >gi|94312516|ref|YP_585726.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356368|gb|ABF10457.1| putative two-component response regulator [Cupriavidus metallidurans CH34] Length = 224 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+ED+ LA + L+ F + +VTD G E+DA++LDL L G Sbjct: 1 MRILLVEDEVELARWVTRALEQGGFVIEHVTD-GLKAEARLMAEEYDAVVLDLRLPGKDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+A+R TPV IL+ +++++VRGL GADDY+ KPF EL ARI A++RRS Sbjct: 60 LAVLKAMRGRDDRTPVLILTAQDTLDERVRGLNLGADDYLPKPFAIAELEARILALIRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 RG A + G L + +A++ + G + LT +E ++ L R LTK L+ ++ Sbjct: 120 RGRAHPRLQCGTLVFDGEARSFTLAGAPLSLTPRESTLLGALLARSGQPLTKAQLLDKVF 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V + +LRKKLS G I T+ G GY+L Sbjct: 180 SLDADVSPDAIEVLVYRLRKKLS---GHGVTIVTLRGFGYLL 218 >gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis H37Rv] gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory protein TcrA [Mycobacterium tuberculosis H37Ra] gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis F11] gi|215402371|ref|ZP_03414552.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis 02_1987] gi|215410144|ref|ZP_03418952.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis 94_M4241A] gi|215425834|ref|ZP_03423753.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis T92] gi|253797536|ref|YP_003030537.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 1435] gi|254230940|ref|ZP_04924267.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis C] gi|254363558|ref|ZP_04979604.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis str. Haarlem] gi|254549559|ref|ZP_05140006.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199607|ref|ZP_05767098.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|260203767|ref|ZP_05771258.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289441991|ref|ZP_06431735.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|289552854|ref|ZP_06442064.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 605] gi|289573201|ref|ZP_06453428.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289744315|ref|ZP_06503693.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis 02_1987] gi|289749099|ref|ZP_06508477.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T92] gi|294996116|ref|ZP_06801807.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis 210] gi|297633098|ref|ZP_06950878.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 4207] gi|297730076|ref|ZP_06959194.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN R506] gi|298524089|ref|ZP_07011498.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313657403|ref|ZP_07814283.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN V2475] gi|81668934|sp|O07776|TCRA1_MYCTU RecName: Full=Transcriptional regulatory protein tcrA gi|288559204|sp|Q7D9K0|TCRA2_MYCTU RecName: Full=Transcriptional regulatory protein tcrA gi|2222756|emb|CAB09978.1| PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA [Mycobacterium tuberculosis H37Rv] gi|124599999|gb|EAY59009.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis C] gi|134149072|gb|EBA41117.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis str. Haarlem] gi|148504524|gb|ABQ72333.1| putative two component DNA binding transcriptional regulatory protein TcrA [Mycobacterium tuberculosis H37Ra] gi|148720331|gb|ABR04956.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis F11] gi|253319039|gb|ACT23642.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 1435] gi|289414910|gb|EFD12150.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|289437486|gb|EFD19979.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 605] gi|289537632|gb|EFD42210.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289684843|gb|EFD52331.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis 02_1987] gi|289689686|gb|EFD57115.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T92] gi|298493883|gb|EFI29177.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|326902434|gb|EGE49367.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis W-148] gi|328457319|gb|AEB02742.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 4207] Length = 253 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED+ + + L E V G + ++DA++LD+ L I GF Sbjct: 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ G +ET+ G GY LR++ Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPF-GVTSLETIRGAGYRLRKDG 246 >gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 225 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DDK ++ I L E + V V + G++G+ L E D IILD+ + D+ G E Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V + LR P+ +++GM SI D+V GL++GADDY+ KPF EELVAR++A++RR Sbjct: 64 VCKRLR-KDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ DL V+L + I + E+ ++ LT+E+ ++ ++ Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++V++ LR KL A I TV G GYVLRE Sbjct: 183 GFDFRGESNVLEVYVGYLRSKL-EAQNEPRLIHTVRGAGYVLRE 225 >gi|238909978|ref|ZP_04653815.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 219 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLVEDDTLIGDGIKTGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + G + L KE+ ++ELL K L +++ LY+ Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V + LR+KL G +I TV G GY L Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216 >gi|116873785|ref|YP_850566.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742663|emb|CAK21787.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 231 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD+ + ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 5 ILIADDDREIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRKSGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q+ +V G + V+ V V +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSRDKVVIGPIVVDRGLHVVTVSEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL +A GG++ I+T+WG GY Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGESVIKTIWGVGY 227 >gi|325926597|ref|ZP_08187911.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325542949|gb|EGD14398.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] Length = 233 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED+ LA +I ++ + D DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++R Sbjct: 58 DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG A ++ G + A T+ + G I L +EY++ E+L R + K+ N Sbjct: 118 RNRGQASEVVQIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNG 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ D+ I++++ +LR+KL+ A I TV G GY L E Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLAAA---PVRIVTVRGAGYKLEE 220 >gi|322418162|ref|YP_004197385.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320124549|gb|ADW12109.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 237 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD L + L SE + V G +G++ ++ ++LD+ L + GF+ Sbjct: 4 RILIIDDDTGLCELLGSYLASEGYLVDAVHDGAEGVDKAVSRDYAFVVLDVMLPTLNGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R PV +L+ D++ GL+ GADDY+ KPFN ELVAR+RAI RRS Sbjct: 64 VLRRIR-QNTQVPVLMLTARGDEIDRIVGLEMGADDYLPKPFNPRELVARLRAIQRRSDA 122 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 L+ GD+S++L A+TV + LT E+ ++E L + ++++ Sbjct: 123 FPAGAEPKPDLLQVGDVSLDLGARTVSCANSPVELTSLEFSVLEALVRQAGNVMSRDDLT 182 Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 GR+ + IDV + LRKKL AAGG+ I++V G GY+ Sbjct: 183 RQAL-GREFSSFDRSIDVHVSSLRKKLGPAAGGEERIKSVRGVGYI 227 >gi|228941716|ref|ZP_04104263.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974641|ref|ZP_04135207.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981236|ref|ZP_04141536.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis Bt407] gi|228778436|gb|EEM26703.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis Bt407] gi|228785044|gb|EEM33057.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817928|gb|EEM64006.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942322|gb|AEA18218.1| two-component response regulator ycbL [Bacillus thuringiensis serovar chinensis CT-43] Length = 230 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F V + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL+++ TVE + LT KE+++++L +N TK Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNRKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227 >gi|148378355|ref|YP_001252896.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153933802|ref|YP_001382754.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153934962|ref|YP_001386305.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153938363|ref|YP_001389720.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168177695|ref|ZP_02612359.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|148287839|emb|CAL81905.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152929846|gb|ABS35346.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152930876|gb|ABS36375.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152934259|gb|ABS39757.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|182670981|gb|EDT82955.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|295317808|gb|ADF98185.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 228 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ LK NF+V + GE+GIE + ++ D ++LD+ L + G E Sbjct: 3 KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + +L+ S DKV GL+ GADDYI KPFN EL RI+AI+RR Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S +I G ++L +K + I +T EY ++++ ++ L+ + Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + KI+DV I +LR K+ +I+TVWG GY Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGY 223 >gi|170733982|ref|YP_001765929.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254247342|ref|ZP_04940663.1| Two-component response regulator yvrH [Burkholderia cenocepacia PC184] gi|124872118|gb|EAY63834.1| Two-component response regulator yvrH [Burkholderia cenocepacia PC184] gi|169817224|gb|ACA91807.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 224 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A + L+S+ F V G+ + +D ++LDLGL G Sbjct: 5 MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR ++ PV I++ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 65 DVLRTLRGRGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++SLI G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 125 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL G + I V G GY++ Sbjct: 185 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 220 >gi|324112281|gb|EGC06259.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] Length = 223 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD L + L ++E + + + + ++LDLGL D G Sbjct: 1 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQFLESGHYSLVVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++RR Sbjct: 61 HFLARIRQKKHTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S + G+L + + + V + + LT KEY ++ L L+ + + +E+ N +Y+ Sbjct: 121 TQGESELNIGNLKLIMGRRQVWMGNEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +EP ++V I LR K+ GK I TV G GY+L Sbjct: 181 WDNEPSTNTLEVHIHNLRDKI-----GKERIRTVRGFGYML 216 >gi|62258001|gb|AAX77759.1| unknown protein [synthetic construct] Length = 264 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 134/229 (58%), Gaps = 4/229 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +DDK +A I+ + + V G++ + L +D I++D + + G Sbjct: 32 KVLVADDDKKIAQFIKTKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWMMPYLDGIS 91 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L+ LR I+TPV ILS + S E+K+ GL+SG+DDY++KPF+ +EL+ R+ + +R++ Sbjct: 92 LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 151 Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 AQ+ ++ GD+ ++ A V I L +EY+++ LL KN ++K M L + Sbjct: 152 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 211 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +D +P+ +++V I +LR KL+ G + I+T+ G GYV++E D Sbjct: 212 WDYDFDPQTNVVEVHISRLRNKLT-EGGLSDPIKTIRGFGYVIQEYPYD 259 >gi|21221456|ref|NP_627235.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289771258|ref|ZP_06530636.1| two-component system response regulator [Streptomyces lividans TK24] gi|7799208|emb|CAB90924.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289701457|gb|EFD68886.1| two-component system response regulator [Streptomyces lividans TK24] Length = 229 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 224 >gi|296111034|ref|YP_003621415.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832565|gb|ADG40446.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 237 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 133/236 (56%), Gaps = 12/236 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E + V G++ + + + D ++LD L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYEVITAADGQEALTIFNEEKPDLVLLDQMLPEIDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R +K TPV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R + Sbjct: 63 VLRQIR-SKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121 Query: 122 HAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 AQ+ I GDL+++ A V G I LT +E++++ L+ + +T Sbjct: 122 VAQAQNADDSVANTEDIELGDLTIHPQAYMVSKSGQDIELTHREFELLYYLAQHISQVMT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E L ++ +V+ +DV + +LR+K+ + N++ T G GY LR +A+ Sbjct: 182 REHLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE 237 >gi|150021392|ref|YP_001306746.1| two component transcriptional regulator [Thermosipho melanesiensis BI429] gi|149793913|gb|ABR31361.1| two component transcriptional regulator, winged helix family [Thermosipho melanesiensis BI429] Length = 218 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ L +EL EN V + GED + + + ++ D +ILD+ L DI G Sbjct: 1 MKILIVEDDEKLRRLLELEYNHENCEVKTCEFGEDALLIYEEFKPDVVILDIMLPDIDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR S + +L+ +S +DK+ G +SGADDYI KPF+ EEL AR +A+ RR + Sbjct: 61 EVAKKLRKLDPSAGIIMLTALSQKKDKLEGFESGADDYIVKPFDFEELFARTKALARR-K 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G I G+L +N+ + V + I+L+ E+ ++ L + ++KE L+ ++ Sbjct: 120 GVLDEEINLGELKINILKREVTFKDKLINLSKTEFDLLLYLVKNSDRVVSKEEILDAVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E I++V+I LRKK+S+ + I+TV G GY + Sbjct: 180 FSYEGSENIVEVYINYLRKKISS-----DLIKTVRGIGYTI 215 >gi|295098097|emb|CBK87187.1| transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 224 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L F V + G L + + ILD+G+ G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVNDGRAADHLLQGENYAVAILDIGMPGFDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ LR + PV L+ S++ D+V+GL +GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 EVVHRLRKRGQTLPVLFLTARSNVADRVKGLNAGADDYLPKPFELEELDARLRALLRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q G+L + D ++ + LT +E ++++L R+ ++++ + ++ Sbjct: 121 GRTQERQRLGELEYD-DEGFFLLRDEPLSLTPRELSLLKVLMHRRTRPVSRQQLFDQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ + ID++I +LRKKL+ G I T+ G GYVL Sbjct: 180 LNDDVSPESIDLYIHRLRKKLT---GSGVRIITLRGLGYVL 217 >gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 250 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L + V G + IE+ + D IILD+ L DI GF V Sbjct: 14 IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+ PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 74 TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 133 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 134 VEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLR 222 + I++ +I LRKK+ + G + IET G GY++R Sbjct: 194 YDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIR 244 >gi|169797190|ref|YP_001714983.1| transcriptional activator protein [Acinetobacter baumannii AYE] gi|213156019|ref|YP_002318064.1| transcriptional activator protein CusR [Acinetobacter baumannii AB0057] gi|293610351|ref|ZP_06692652.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|301347407|ref|ZP_07228148.1| transcriptional activator protein CusR [Acinetobacter baumannii AB056] gi|301513259|ref|ZP_07238496.1| transcriptional activator protein CusR [Acinetobacter baumannii AB058] gi|301595578|ref|ZP_07240586.1| transcriptional activator protein CusR [Acinetobacter baumannii AB059] gi|332850792|ref|ZP_08433024.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013150] gi|332866185|ref|ZP_08436891.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013113] gi|169150117|emb|CAM88011.1| Transcriptional activator protein [Acinetobacter baumannii AYE] gi|213055179|gb|ACJ40081.1| transcriptional activator protein CusR [Acinetobacter baumannii AB0057] gi|292827583|gb|EFF85947.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|332730451|gb|EGJ61768.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013150] gi|332734759|gb|EGJ65854.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013113] Length = 227 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRILL+ED++ ++ L Y+TD DG+ E+D IILD+ L + Sbjct: 1 MRILLVEDEQKTGDYLKQGLSEAG---YITDWVTDGLSGKHQALSEEYDLIILDVMLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ ++ +R + + P+ LS IED+V+GL+ GADDY+ KPF EL+ARI+ ++R Sbjct: 58 DGWNIINDIRKSGKTMPILFLSARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLR 117 Query: 118 RSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + S I+T DL ++L + V G RI LT KE+ ++EL R+ L + + + Sbjct: 118 RGQQKEDSNIITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIAS 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +++V I +LR K+ + K I+ + G GYVL Sbjct: 178 QIWDMNFDSDTNVVEVAIKRLRNKIDSNFSPK-LIQNIRGMGYVL 221 >gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes] gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes] gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes] gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes] gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes] gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes] gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes] Length = 233 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 132/234 (56%), Gaps = 11/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G EV Sbjct: 1 MLVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 121 AEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233 >gi|10281108|gb|AAG15433.1|AF189161_1 putative response regulator [Streptomyces coelicolor] Length = 228 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 7 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 67 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 126 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 223 >gi|319653929|ref|ZP_08008023.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317394465|gb|EFV75209.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 238 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+LL++D++A+ H + +L+ E F N+ +E C+ Y +D I+LD+ L D GF Sbjct: 5 RLLLVDDEQAILHMLCTILQREQFRNIDTASTAAQALERCRSYTYDLILLDVMLPDRSGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R P+ L+ S+ DK+ G GADDYI+KPFN E+ ARI+A +RR + Sbjct: 65 DICPLIR-ETTDAPIFFLTARSTDLDKLSGFALGADDYITKPFNPLEVAARIKAHLRRHK 123 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G Q++ G + +N A V V G RI L + YQ++ LS N +K Sbjct: 124 GSQPVPVQTIYDFGRIKINTSAGEVTVSGKRIDLPAQVYQLLLFLSKHPNQLFSKSQLYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 H++ E + V I KLR+K+ + +I TV G GY Sbjct: 184 HVWGEEGFGEDNTVMVHIRKLREKIESNPSSPCHIITVRGLGY 226 >gi|319761447|ref|YP_004125384.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|317116008|gb|ADU98496.1| response regulator receiver [Alicycliphilus denitrificans BC] Length = 236 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 6/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD ++A + + L E ++V G G+ + + A++LDL L + G E Sbjct: 6 RILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R P+ I S SS ++ GL+ GADDY++KPF+ ELVAR+RA++RRS Sbjct: 66 ICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRSEA 125 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ ++ G LS++ A+ V G + LT +E+ ++ + + ++ L Sbjct: 126 LARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQPGKVFSRLDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 N ++ R + ++ I +LR K+ I TVWGRGY L E+A Sbjct: 186 NQVWGYRHDGYEHTVNTHINRLRIKIERNPADPKRILTVWGRGYKLAEDA 235 >gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18] gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 228 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++AL+ + +L E F V D G D + + D ++LD+ L + G E Sbjct: 4 KILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMSGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S P+ +L+ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 VCRKLREVS-SVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 122 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S++ G + +++D V V G I + KE++++E+L +T+ + Sbjct: 123 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV I +LR K+ + Y+ TV G GY Sbjct: 183 VWGADYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGY 224 >gi|73541789|ref|YP_296309.1| two component transcriptional regulator [Ralstonia eutropha JMP134] gi|72119202|gb|AAZ61465.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 226 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ LA+S+ + F V G L ++ +ILDLGL + G Sbjct: 1 MRILLAEDNLMLANSLTQAMTQAGFTVDCMHDGRSADHLLATQDYALLILDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+VRGL GADDY++KPF+ EL AR RA++RRS Sbjct: 61 EVLRRLRQRRNRMPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSELEARARALIRRSH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + + G L + ++ + G + LT +E ++E+L LR + K ++ Sbjct: 121 GHESTQLSCGPLHYDSVSRAFTIDGELLQLTRRERSVLEVLLLRNGKAVNKSALSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+++I +LRKKL G I T+ G GY++ Sbjct: 181 IDESVNPDAIEIYIHRLRKKLD---GSGVAIVTLRGLGYLI 218 >gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis CDC1551] gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis CDC1551] Length = 247 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED+ + + L E V G + ++DA++LD+ L I GF Sbjct: 17 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 77 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 137 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ G +ET+ G GY LR++ Sbjct: 197 AAYEARSNIVDVYIRYLRDKIDRPF-GVTSLETIRGAGYRLRKDG 240 >gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA [Mycobacterium abscessus ATCC 19977] gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response transcriptional regulatory protein) [Mycobacterium abscessus] Length = 230 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 129/233 (55%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 +RIL+++DD+A+ S+ +S +FN Y DL EDG++ DA++LD+ + + Sbjct: 3 VRILVVDDDRAVRESLR---RSLSFNGYSVDLAEDGVDALNVIANDRPDALVLDVMMPKL 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ S+ ++V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 60 DGLEVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119 Query: 118 RSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R+ + T GDL+++ + V I LT E+ ++E+L LT+ Sbjct: 120 RTTIDESADAATLSFGDLTLDPVTREVHRGTRSISLTRTEFALLEMLMANPRRVLTRSRI 179 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 180 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEAEGELRLIHTVRGVGYVLRETPP 230 >gi|166713358|ref|ZP_02244565.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 233 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED+ LA +I ++ + D DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++R Sbjct: 58 DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG A ++ G + A T+ + G I L +EY++ E+L R + K+ N Sbjct: 118 RNRGKASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFEILIGRLGRVVGKDEIGNG 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ D+ I++++ +LR+KL+ A I TV G GY L E Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220 >gi|54297348|ref|YP_123717.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Paris] gi|148358969|ref|YP_001250176.1| transcriptional regulator CpxR [Legionella pneumophila str. Corby] gi|296107018|ref|YP_003618718.1| two-component system, OmpR family, response regulator CpxR [Legionella pneumophila 2300/99 Alcoy] gi|53751133|emb|CAH12544.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Paris] gi|148280742|gb|ABQ54830.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Corby] gi|295648919|gb|ADG24766.1| two-component system, OmpR family, response regulator CpxR [Legionella pneumophila 2300/99 Alcoy] Length = 226 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD L + L+ E FNV GE+G++ FDAIILD+ L + GFEV Sbjct: 5 ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALNQVFDAIILDVMLPKLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+A+R + TPV +L+ D++ GL+ GADDY+ KP N ELVAR+RAI+RR++ Sbjct: 65 LKAIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I ++ V+ + V + G + LT E+ ++E+L +KE + Sbjct: 124 PTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV I LR KL + G+ ++TV G GY+ Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMF 224 >gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13] Length = 223 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K +A ++L L+ E + G G+E K +D ++LD+ L ++ G EV Sbjct: 4 ILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKFKENHWDLVLLDVMLPELSGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R STPV +L+ +SI DKV GL GA+DY++KPF EEL+AR+RA +R + Sbjct: 64 LRRIRATDTSTPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLRTVQSG 123 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ D VN + V + LT KE+ ++ K L +E LN ++ Sbjct: 124 TEKNAGVLTVNDWKVNEKTREVSRGDEHVDLTPKEFDLLVYFIENKGQALNREQILNRVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I+DV++ LRKKL + + T+ G GY L+E Sbjct: 184 GFDYYGDTNIVDVYVRHLRKKLDLS----EVLVTLRGVGYRLKE 223 >gi|297158456|gb|ADI08168.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 247 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + G D +E Y+ + I+LD+ + + G Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYLTETALDGLDALEKVGAYDPELIVLDVLMPRMDGLT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR ++ PV +L+ ++ D+V GL +GADDY+ KPF +EL+ARIRA++RRS Sbjct: 72 AARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSSY 131 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + + DL +NL + V G R+ LT E+ ++E+ LT+E Sbjct: 132 AAAAGAVAETGADELTFADLRMNLATREVNRGGRRVELTRTEFTLLEMFLAHPRQVLTRE 191 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 192 QILKAVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 240 >gi|121534557|ref|ZP_01666379.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306809|gb|EAX47729.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 223 Score = 127 bits (320), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL EDD L I+ ML+ E V +VT+ G +E + +D +ILD + + G Sbjct: 1 MRILLAEDDSRLGKLIKHMLEKEKMQVDWVTE-GNAALEYALYSPYDVVILDWMMPGLSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV LR + + +L+ +++DKV GL +GADDY+ KPF EL+ARIRA+ RRS Sbjct: 60 LEVCDRLRKRRYQGAILMLTARDAVDDKVLGLDTGADDYLVKPFEFSELMARIRALSRRS 119 Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + IV GDL +N + V I LTG+E+QM++LL + + +E+ L+ + Sbjct: 120 AVVLKEDIVQVGDLVLNRTTRVVRRGDREIQLTGREFQMLDLLVQNRGKVVPREVILDRV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +D ++ LRKK+ + G + I + G GY L E Sbjct: 180 WGLESEVSSNNLDAYVRLLRKKI-DFPGEEKLIHNIRGIGYKLGE 223 >gi|254558966|ref|YP_003066061.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens DM4] gi|254266244|emb|CAX22002.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens DM4] Length = 220 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 118/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+ + L V D F A++LDL L D G Sbjct: 1 MRILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALAASGFGAVVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR TPV +L+ ++ D++ GL GADDY+ KPF+ +EL ARIRA+VRR+ Sbjct: 61 DVLRGLRERGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELAARIRAVVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + + ++ TV + G + ++ +E+ ++ L R N +K LY Sbjct: 121 GRASACLEHAGIRLDPAELTVTLHGEPVPVSRREFMVLTALMERPNVLRSKAELEERLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E E ++V + LR K+ GK+ IETV G GY +R A Sbjct: 181 WQEEVESNTVEVHVHNLRAKI-----GKHAIETVRGLGYRMRATA 220 >gi|229527792|ref|ZP_04417183.1| transcriptional regulator [Vibrio cholerae 12129(1)] gi|229334154|gb|EEN99639.1| transcriptional regulator [Vibrio cholerae 12129(1)] Length = 224 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + H + + DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ +LRKK+ + + I+T G GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221 >gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 237 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ I + L+ +F V G++ + K + ++LD+ L + G E Sbjct: 6 RILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTRSKTFRPHLMVLDIMLPGMDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LRV V +L+ DKV GL+ GADDY+ KPFN ELVARIRA++RR Sbjct: 66 VCRRLRVESPGIAVIMLTARGQDIDKVMGLELGADDYVVKPFNPLELVARIRAVLRRMQT 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R +I G ++ A+ + + LT +EY ++++ N L+++ LN Sbjct: 126 DRPDNSQIICQGLFRLDDRAQLICKNDQELDLTPREYCLMKIFLENSNRALSRDWLLNLA 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + K +DV I +LR+K+ + YIETVWG GY RE K Sbjct: 186 WGEDFVGDPKTVDVHIRRLREKIEDNPSKPVYIETVWGVGYRWREEGK 233 >gi|257790147|ref|YP_003180753.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317489597|ref|ZP_07948102.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|257474044|gb|ACV54364.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911329|gb|EFV32933.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 237 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 2/232 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD LA ++ +L + V G G+ + ++D IILD+ L + GF Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR IS PV +L+ ++ DK+ GL SGADDY++KPF EL+A +RA+ RR Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +NL++ + IHL+ KE+ + ++L ++K+M + ++ Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKDETCE 231 E ++ ++ LRKK+ G IET+ GY + + A D+ E Sbjct: 181 VESSAEDNNVEAYVSFLRKKM-KFLGSTARIETLRRAGYRFVADAAPDDASE 231 >gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 239 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 131/234 (55%), Gaps = 8/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ ++ + LK E + V E+ +++ + E D I+D+ L + GFE+ Sbjct: 6 ILVVDDEPSIVELLTFNLKKEGYEVLKAYDAEEALKIAEDNETDMFIVDIMLPGMDGFEL 65 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R LR + TPV LS S DKV GL+ GADDYI+KPF+ E++ARIRA+ RR + Sbjct: 66 VRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAVFRRIQ 125 Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQ+ I+ DL ++ + V V+ ++LT E++++ L+ + ++++ Sbjct: 126 QSAQAKEERPKKILARDLEIDTEKYEVRVRNRMVNLTPLEFELLRFLAENEGKVFSRDVL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ A YI TV G+GY R+ K++ Sbjct: 186 LDKLWGYDYYGDTRTVDVHIRRLRTKIEEDASTPKYIITVRGKGYKFRDPGKED 239 >gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 230 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I+ +K+ +N Y G++ +E+ + + D +ILD+ + D+ G EV Sbjct: 4 ILIVDDDKEIVELIDFYMKNNGYNTYKAFNGKEALEIFQKEQIDIVILDIMMPDLDGKEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 LR +R K STP+ LS DK+ GL GADDY++KPFN EL+AR++A++RRS Sbjct: 64 LRKIR-EKSSTPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALLRRSTIF 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I+ L ++ ++ V I LT EY++I +N TK Sbjct: 123 NNTKEESNLTIINKHLKLDEESCKVYKDDVEIQLTSFEYKLICFFMKNRNKVFTKGQLYE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + KII V+I KLR+K+ + N+I+T+ G GY+ + Sbjct: 183 EVWGQCYLGDEKIIMVYISKLREKIEDNPKEPNFIKTIRGLGYIFQ 228 >gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 130/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++ LA IEL LK E + + + G G+E+ + E D ++LD+ L +I G Sbjct: 2 IKILIVEDEEKLARFIELELKHEGYEILKANNGRTGVEIAEKGEVDLVLLDIMLPEINGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVLR +R + PV +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR +++ Sbjct: 62 EVLRRIRRSS-DIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I G LS++ V I LT +E+ ++++L KN LT+ + Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRNTLMEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +IDV++ LR K+ + K I TV G GYV+++ Sbjct: 181 VCGYDYIGETNVIDVYVRYLRTKIDDVFKVKT-ITTVRGVGYVIKD 225 >gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes] gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes] gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes] gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes] gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes] gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes] Length = 233 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 132/234 (56%), Gaps = 11/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G EV Sbjct: 1 MLVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 121 AEIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233 >gi|52841668|ref|YP_095467.1| transcriptional regulatory protein CpxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294527|ref|YP_126942.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Lens] gi|33415232|gb|AAQ18123.1| CpxR [Legionella pneumophila] gi|52628779|gb|AAU27520.1| transcriptional regulatory protein CpxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53754359|emb|CAH15843.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Lens] gi|307610141|emb|CBW99687.1| transcriptional regulatory protein CpxR [Legionella pneumophila 130b] Length = 226 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD L + L+ E FNV GE+G++ FDAIILD+ L + GFEV Sbjct: 5 ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKRALNQVFDAIILDVMLPKLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+A+R + TPV +L+ D++ GL+ GADDY+ KP N ELVAR+RAI+RR++ Sbjct: 65 LKAIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I ++ V+ + V + G + LT E+ ++E+L +KE + Sbjct: 124 PTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV I LR KL + G+ ++TV G GY+ Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMF 224 >gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 241 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ A+ +E LK NF V G D + + + +FD ++LDL L + G + Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQANFEVQSATNGVDALSMAENGQFDIVLLDLMLPQMSGEQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL+ LR+ + TPV +L+ + DKV GL+ GADDYI KPF+ E++ARI A++RR Sbjct: 63 VLKQLRMDRNDTPVILLTAKDTEFDKVFGLEMGADDYIPKPFSPREVIARINAVLRRYEK 122 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + A+++ TG +++ V + LT KE++++E L +N L+ Sbjct: 123 SAAASETPATKSAENVETTGPFTIDHKKYRVSADSKNLKLTPKEFELMEYLVSHENQVLS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ L ++ + +++D+ I LR+K+ Y+ TV G GY Sbjct: 183 RDQLLQGVWGFDYSGQSRMVDIQIAHLREKIEPDPKRPKYLRTVRGFGY 231 >gi|257866993|ref|ZP_05646646.1| two component transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873327|ref|ZP_05652980.1| two component transcriptional regulator [Enterococcus casseliflavus EC10] gi|257801049|gb|EEV29979.1| two component transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807491|gb|EEV36313.1| two component transcriptional regulator [Enterococcus casseliflavus EC10] Length = 228 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 137/233 (58%), Gaps = 8/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL +ED+ ++A ++ +LK ++++V + GE G++ +D ++LD+ L I G Sbjct: 1 MRILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDLLVLDIMLPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR I TP+ +L+ S ++DKV GL +GADDY++KPF +EL+ARIR++ RR Sbjct: 61 TLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRRKD 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + G++ + + + +++ L+ KE +++EL R L+KE +N ++ Sbjct: 121 LDYQEDQLAFGNVVLARNELQLATTTNQVVLSPKEMKLMELFLSRPKVILSKETIINKIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVLRENAKDETC 230 + E +++++ LRKKL+ A G I T+ GY+L+ +K+ C Sbjct: 181 GFDPDVEENRVEIYVSLLRKKLTLLEADIG---IRTIRNAGYILQ--SKEPLC 228 >gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 232 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ ++ ++L L+ E + V G G E+ E++ ++LD+ L ++ G E Sbjct: 4 RVLVVEDEAGISRILQLELEHEGYTVGTAADGRTGYEMASTGEWELVLLDVMLPELNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 VLR LR A PV +L+ ++ DKV G + GA+DYI+KPF EEL+AR+R I+R Sbjct: 64 VLRRLRQAGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNILRIFQQ 123 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 LI GDL++ L + V + I LT +E++++ L KN ++E L+ Sbjct: 124 YPKESEGSDLIKVGDLTIELRTRKVYRKEIVIELTPREFELLVYLVENKNEEKSREDILS 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E ++DV+I LR+KL K I TV G GY+++E Sbjct: 184 EVWGYDFIGETNLVDVYIRYLRQKLDKGYRHK-LIHTVRGVGYMIKE 229 >gi|150018389|ref|YP_001310643.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904854|gb|ABR35687.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 226 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++EDD+ LA +EL L E + + D G G+E+ + E D ++LD+ + I G Sbjct: 2 VKILIVEDDEKLARFVELELLHEGYEILKADNGRLGLEIAEKGEVDLVLLDIMIPQINGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVLR +R PV +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR ++R Sbjct: 62 EVLRRIRKTS-DLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKRRT 120 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +I G LS++ V I LT +E+ ++++L KN LT+++ + Sbjct: 121 VIEKRDTDIISCGLLSLDKMRHKVTYDNKEIELTNREFTLLKILLENKNIVLTRDILMEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +IDV+I LR K+ +A K I TV G GYV+++ Sbjct: 181 VCGYDYIGETNVIDVYIRFLRTKIDDAFKTK-IITTVRGVGYVIKD 225 >gi|15601007|ref|NP_232637.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587109|ref|ZP_01676885.1| transcriptional regulator [Vibrio cholerae 2740-80] gi|121729896|ref|ZP_01682322.1| transcriptional regulator [Vibrio cholerae V52] gi|147672355|ref|YP_001215826.1| transcriptional regulator [Vibrio cholerae O395] gi|153215292|ref|ZP_01949936.1| transcriptional regulator [Vibrio cholerae 1587] gi|153802077|ref|ZP_01956663.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|153802458|ref|ZP_01957044.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|153820149|ref|ZP_01972816.1| transcriptional regulator [Vibrio cholerae NCTC 8457] gi|153822561|ref|ZP_01975228.1| transcriptional regulator [Vibrio cholerae B33] gi|153826711|ref|ZP_01979378.1| transcriptional regulator [Vibrio cholerae MZO-2] gi|227811861|ref|YP_002811871.1| transcriptional regulator [Vibrio cholerae M66-2] gi|229506603|ref|ZP_04396112.1| transcriptional regulator [Vibrio cholerae BX 330286] gi|229510601|ref|ZP_04400081.1| transcriptional regulator [Vibrio cholerae B33] gi|229517268|ref|ZP_04406713.1| transcriptional regulator [Vibrio cholerae RC9] gi|229526139|ref|ZP_04415543.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426] gi|229605078|ref|YP_002875782.1| transcriptional regulator [Vibrio cholerae MJ-1236] gi|254225977|ref|ZP_04919578.1| transcriptional regulator [Vibrio cholerae V51] gi|254850562|ref|ZP_05239912.1| transcriptional regulator [Vibrio cholerae MO10] gi|255745957|ref|ZP_05419904.1| transcriptional regulator [Vibrio cholera CIRS 101] gi|262168256|ref|ZP_06035954.1| transcriptional regulator [Vibrio cholerae RC27] gi|298500087|ref|ZP_07009893.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9657634|gb|AAF96150.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548645|gb|EAX58695.1| transcriptional regulator [Vibrio cholerae 2740-80] gi|121628363|gb|EAX60865.1| transcriptional regulator [Vibrio cholerae V52] gi|124114831|gb|EAY33651.1| transcriptional regulator [Vibrio cholerae 1587] gi|124122026|gb|EAY40769.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|124122376|gb|EAY41119.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|125621511|gb|EAZ49844.1| transcriptional regulator [Vibrio cholerae V51] gi|126509301|gb|EAZ71895.1| transcriptional regulator [Vibrio cholerae NCTC 8457] gi|126519921|gb|EAZ77144.1| transcriptional regulator [Vibrio cholerae B33] gi|146314738|gb|ABQ19278.1| transcriptional regulator [Vibrio cholerae O395] gi|149739498|gb|EDM53732.1| transcriptional regulator [Vibrio cholerae MZO-2] gi|227011003|gb|ACP07214.1| transcriptional regulator [Vibrio cholerae M66-2] gi|227014908|gb|ACP11117.1| transcriptional regulator [Vibrio cholerae O395] gi|229336297|gb|EEO01315.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426] gi|229345304|gb|EEO10277.1| transcriptional regulator [Vibrio cholerae RC9] gi|229353046|gb|EEO17986.1| transcriptional regulator [Vibrio cholerae B33] gi|229356954|gb|EEO21872.1| transcriptional regulator [Vibrio cholerae BX 330286] gi|229371564|gb|ACQ61986.1| transcriptional regulator [Vibrio cholerae MJ-1236] gi|254846267|gb|EET24681.1| transcriptional regulator [Vibrio cholerae MO10] gi|255735711|gb|EET91109.1| transcriptional regulator [Vibrio cholera CIRS 101] gi|262023499|gb|EEY42202.1| transcriptional regulator [Vibrio cholerae RC27] gi|297542068|gb|EFH78119.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|327485449|gb|AEA79855.1| transcriptional regulator [Vibrio cholerae LMA3894-4] Length = 224 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + H + + DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ +LRKK+ + + I+T G GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221 >gi|197287013|ref|YP_002152885.1| DNA-binding transcriptional regulator CpxR [Proteus mirabilis HI4320] gi|227354741|ref|ZP_03839159.1| two component system response regulator [Proteus mirabilis ATCC 29906] gi|194684500|emb|CAR46276.1| two component system response regulator [Proteus mirabilis HI4320] gi|227165184|gb|EEI50012.1| two component system response regulator [Proteus mirabilis ATCC 29906] Length = 232 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV + GE ++L D ++LD+ + G E Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVVLATDGEQALKLLD-ASIDLLLLDIMMPRKNGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 L+ LR TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELR-QNFQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G+ ++ L +N + + LTG E+ ++ LL+ +++E Sbjct: 121 SEQKQTDGNTSPILQVDKLQLNPGRQEASFDNEPLELTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G+ + +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLM 228 >gi|170747666|ref|YP_001753926.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654188|gb|ACB23243.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 247 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 1/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLIEDD A + L+ +V G DG + + AIILD L G Sbjct: 25 KLLLIEDDSETAADVRDDLRGRGHDVVWAATGPDGARAARDGGWGAIILDRMLPGQDGLG 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR TP +LS + +++++RGL++G DDY++KPF EL ARI A++RR Sbjct: 85 VLQDLRRDGDRTPALVLSALGDVDERIRGLRAGGDDYLAKPFALGELAARIEALLRRPVD 144 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++++ G L+++L A T + L +E +++E L R +T+ M +++ Sbjct: 145 SRETVLHVGSLAIDLIAGTGRRGARDLELLPRELKLLEYLMRRPGQIVTRAMLFEEVWNY 204 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 R P+ +IDV + +LR+KL AAG I +V G G+ L +A Sbjct: 205 RFTPKSNLIDVHVGRLRRKL-EAAGEPPLIHSVRGTGFTLSPDA 247 >gi|167579987|ref|ZP_02372861.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] gi|167618057|ref|ZP_02386688.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257140105|ref|ZP_05588367.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 220 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MRILL+EDD+ +A + LK++ V D +DG +A L L +P Sbjct: 1 MRILLVEDDRMIADGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKR 57 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLR LR ++ PV IL+ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 DGIDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G ++S+I G L+++ + V + G + L+ +E+ ++E L R L+K Sbjct: 118 RQSGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +Y +E ++V+I LRKKL G + I V G GY++ + A Sbjct: 178 MYGWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 220 >gi|92118758|ref|YP_578487.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801652|gb|ABE64027.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 221 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD ++ LK + G DG K E +LD+GL ++ GF Sbjct: 1 MRLLLIEDDAMFGKALVRGLKQNGMTIDWVRNGPDGFAALKRAEHAIALLDVGLPEMSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+A+R + P+ I++ +ED V GL GADDYI KPF L+ARIRAIVRR Sbjct: 61 DVLKAMRGTSKAPPILIITARDQVEDMVTGLDLGADDYIVKPFELRALLARIRAIVRRVN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S++ + +++++ +G L+ +E+ ++ L R T L++ + +Y Sbjct: 121 ARSNSVVTSKEITLDPSTYIATFRGIESVLSAREFSVLHALMERPGTILSRSQIESRIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E + +DV I LRKK GK+ I + G G+++ Sbjct: 181 WSEEVQSNAVDVVIHGLRKKY-----GKDIIRNIRGAGWMV 216 >gi|259908742|ref|YP_002649098.1| DNA-binding transcriptional regulator PhoP [Erwinia pyrifoliae Ep1/96] gi|224964364|emb|CAX55873.1| Two-component response regulator of virulence determinants [Erwinia pyrifoliae Ep1/96] gi|283478715|emb|CAY74631.1| Response regulator phoP [Erwinia pyrifoliae DSM 12163] gi|310767361|gb|ADP12311.1| DNA-binding transcriptional regulator PhoP [Erwinia sp. Ejp617] Length = 222 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + L+ V D ED E F + D ++DLGL D Sbjct: 1 MRVLIVEDNPLLRHHLAVQLREMGHQV---DAAEDAKEADYFLNEHTPDITLVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++ P+ +L+ + KV L++GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGMTLIRRWRTQEVRQPILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + +I LT EY +IE L ++K+ + Sbjct: 118 RNCGLASQIITLQPFQVDLSRRELTINDRQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAEHAQEVITTVRGQGY 218 >gi|254420558|ref|ZP_05034282.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196186735|gb|EDX81711.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 226 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L+ ++ L + V GE+ L +D I+LDLGL I G Sbjct: 1 MRVLLVEDDADLSRQLKGALADAGYAVDHAADGEEAWFLGDTEPYDVIVLDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R +TPV IL+ + DKV G +GADDY++KPF+ EEL+AR+RA++RRS Sbjct: 61 SVLERWRREGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G L ++ A V G + LT EY+++ + + + +++ + HLYD Sbjct: 121 GIASATLSCGGLRLDPRAARANVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VFI +LRKK+ G + IETV G GY L Sbjct: 181 QDFDRDSNTIEVFIGRLRKKI-----GSDRIETVRGLGYRL 216 >gi|197119049|ref|YP_002139476.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197088409|gb|ACH39680.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 229 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED+ +A +++ L++EN+ V V GEDG FD ++LDL L G Sbjct: 1 MHILVIEDEPKVAGALKKGLEAENYMVSVAGSGEDGFFRLNTEVFDLVLLDLMLPGRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL ALR TPV IL+ S++D+V GL SGADDY+ KPF EL+ARIR ++RR + Sbjct: 61 EVLTALRKQGFDTPVLILTARDSVDDRVLGLDSGADDYLVKPFAFPELLARIRLVLRREK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ ++LD T +V H I LT +E++++E L K +++EM + Sbjct: 121 KEKEQVLKLFLADLDLDLVTRKVVRHDQEIELTAREFELLEYLLRYKGNIVSREMLSRDV 180 Query: 179 YDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +D P +IDV I +LR+K+ K ++TV G G+ + Sbjct: 181 WQVKDRSTPLDNVIDVHIARLRRKIDGPFKLK-LLKTVRGLGFTV 224 >gi|153000445|ref|YP_001366126.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160875042|ref|YP_001554358.1| two component transcriptional regulator [Shewanella baltica OS195] gi|151365063|gb|ABS08063.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160860564|gb|ABX49098.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|315267274|gb|ADT94127.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 219 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI+L+ED++ LA I L L V + + ++ K F AI+LDLGL D G Sbjct: 1 MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNESFSAIVLDLGLPDGNGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A R +S P +L+ + + K+ L GADDY+ KPF+ EL ARIRAIVRR Sbjct: 61 DLLKAWRQQGVSIPTIVLTANTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + ++ G L ++L+ + V + + L+ +E+Q++ L+ LT+ L L Sbjct: 121 GLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLELAQSAGRVLTRSQ-LEQLTY 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DE I+V I LRKKL+N I+TV G GY L E Sbjct: 180 GWDEVGSNSIEVHIHHLRKKLAN-----ELIKTVRGIGYTLIE 217 >gi|33597417|ref|NP_885060.1| putative two-component response regulator [Bordetella parapertussis 12822] gi|33602158|ref|NP_889718.1| putative two-component response regulator [Bordetella bronchiseptica RB50] gi|33573844|emb|CAE38153.1| putative two-component response regulator [Bordetella parapertussis] gi|33576596|emb|CAE33674.1| putative two-component response regulator [Bordetella bronchiseptica RB50] Length = 223 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 123/219 (56%), Gaps = 8/219 (3%) Query: 3 ILLIEDDKALAHSIELMLKSE-NFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +LL+EDD L +++ L+ E V +V D + + L + + I+LD+GL G Sbjct: 4 LLLVEDDPMLGDALQTALQRELGARVDWVRDGAQAQLALVD-HAYQLILLDIGLPGQSGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LRALR +TPV +++ + D++RGL GADDYI KPF +EL+AR+RA++RRS Sbjct: 63 ALLRALREGYDTTPVLLVTARDQLSDRIRGLDGGADDYIVKPFELDELLARLRAVLRRSH 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ G+L V+ A+ V G + L+ EY+ + L R+ T+++E + +Y Sbjct: 123 NQVAPLMRHGELLVDPAARQVSRAGRPVALSQSEYRTLLALMQRRGRTVSREQLEHDVYG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + V++ +LR+KL G + IETV G GY Sbjct: 183 ASVALESNTVAVYVHQLRRKL-----GDDLIETVHGYGY 216 >gi|303247778|ref|ZP_07334047.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] gi|302490862|gb|EFL50761.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] Length = 220 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 116/219 (52%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+ LA +++ L V + + FDA++LDL L D G Sbjct: 1 MRILIIEDDQVLAAGLKVGLGLAGMTVDMVGSCDAARTALATTTFDAVVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R TPV +L+ + I D+V+GL GADDY KPF+ +EL ARIRAI RR Sbjct: 61 DVLRAMRQRGDRTPVLLLTALDEITDRVKGLDLGADDYCGKPFDLDELAARIRAIGRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + +++ + + + G + L+ +E+ ++ LL +K + LY Sbjct: 121 GRAAPCLTAAGIALEPASLSATINGQPLTLSRREFAVLALLMEHPGAIRSKGEIEDRLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E ++V + LR K+ G+ IETV G GY Sbjct: 181 WGEEVESNTVEVHVHHLRAKV-----GREKIETVRGLGY 214 >gi|299536678|ref|ZP_07049990.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728162|gb|EFI68725.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 232 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLIEDD A+ ++ L+ E + V + G +G+ + FD +++D L ++ G Sbjct: 4 KLLLIEDDTAIGRIVKDTLEQEGYYVTWSTTGLEGLADFQTQPFDLVLVDWMLPEMDGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ ++S DKV GLQ GADDYI+KPF+ EEL AR+ + +RR R Sbjct: 64 VCQNIRWES-DVPILMMSARKEDADKVEGLQ-GADDYIAKPFSLEELKARVASHLRRWRR 121 Query: 122 -HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H Q +I L+++ + V V I LT KE+ ++ LL+ + T TKE Sbjct: 122 YHKQDVIEEHTAYANGLTIDWQRQIVCVYQQEIALTQKEFALVRLLAKNPSQTFTKEELY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 H++ + + V I LR+KL ++ N+I+TVWG+GY Sbjct: 182 QHIWQQATLEDTHTVTVHIKALREKLKDSVKNPNFIQTVWGKGY 225 >gi|295106245|emb|CBL03788.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 230 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 1/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD LA ++ +L+ + V G G+ + +D I+LD+ L GF Sbjct: 1 MQILIVEDDVRLARALAHILEENGYGTDVVHDGATGLAWAEVGRYDVIVLDVMLPKKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR +STPV +L+ ++ DK+ GL SGADDY++KPF EL+A +RA+ RR Sbjct: 61 SVVADLRRTGVSTPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +NL++ + IHL+ KE+ + ++L ++K++ + ++ Sbjct: 121 EVLFEKLSAGDLELNLESHDLSCGAKSIHLSYKEFCLAKVLIANAGAVVSKDLIIEKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 E ++ ++ LRKK+ G IET+ GY NA+++T Sbjct: 181 VESTAEDNNVEAYVSFLRKKM-KFLGSSARIETLRRAGYRFSVNAEEDT 228 >gi|150392434|ref|YP_001322483.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149952296|gb|ABR50824.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K +A ++ L+ E + + + GED ++ + D ++LD+ L + GF+ Sbjct: 4 KILIVEDEKPIADILKFNLEKEGYRIEMAHDGEDALKKVSEFIPDLVLLDVMLPKLDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + S P+ +L+ DKV GL+ GADDYI+KPF EL+AR+ A RR Sbjct: 64 VCRKIRES-FSMPILMLTAKEEEVDKVLGLEIGADDYITKPFGMRELLARVNANFRRMEA 122 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A S I +G LS++ V+ I LT +E+++++ L+++ T+E L Sbjct: 123 PAGSQGGGKISSGKLSIDFSKYEVKRDQLVIELTSREFELLKFLAIQAEQVFTREQLLKE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +DV + +LR+K+ + +G YI+T G GY R Sbjct: 183 VWGYEYYGDIRTVDVTVRRLREKVEDDSGNPKYIQTKRGVGYYFR 227 >gi|306833536|ref|ZP_07466663.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304424306|gb|EFM27445.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 224 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++SI L + V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR ++TPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKSVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + G+L+V T + G + + GKE+ ++ +N L K + ++ Sbjct: 121 KFSDNNLSYGELTVTTSTNTTTINGKEVEMLGKEFDLLVYFLQNQNVILPKSQIFDRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++V++ K+RKKL KN ++T+ GY+L+ Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTTFAKN-LQTLRSVGYILK 221 >gi|291286979|ref|YP_003503795.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290884139|gb|ADD67839.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 227 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ L ++ +L+ ++V G+ G++ E+ IILD+ L + GF Sbjct: 1 MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L A+R A I+TPV +L+ S + D+++GL G+DDY+ KPF EL+AR+RA++RR Sbjct: 61 CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 + D+ +N + V GH + LT KEY + E L KN +TK H++ Sbjct: 121 LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHVWG 180 Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNY--IETVWGRGYVLRE 223 D DE IDV I LRKK+ G +N+ I T G GY++ + Sbjct: 181 DEFDEFNASNFIDVHIKNLRKKI----GDENHLIIRTKRGIGYIIND 223 >gi|254387605|ref|ZP_05002844.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294815008|ref|ZP_06773651.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443376|ref|ZP_08218110.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|176045579|gb|ACB72855.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701331|gb|EDY47143.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327607|gb|EFG09250.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 270 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 124/224 (55%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + L+ E + V G + + + DA++LD+ L D+ G Sbjct: 43 LRLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGL 102 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL LR + PV L+ ++ED++ GL +G DDY++KPF+ EE+V R+R ++RRS Sbjct: 103 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 162 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++V GDL+++ ++ V G I LT E++++ L L+K L+ Sbjct: 163 AVSARPDTVLVVGDLTLDEESHEVSRGGQAIRLTATEFELLRCLMRSPRRVLSKAQILDR 222 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +++++I LR+K+ AG I T G GY+L Sbjct: 223 VWSYDFGGQANVVEIYISYLRRKID--AGRAPMIHTRRGAGYLL 264 >gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus pseudintermedius HKU10-03] gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus pseudintermedius HKU10-03] gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus pseudintermedius ED99] Length = 241 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 130/237 (54%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E + + G + +++ Y++ I+LDL L ++ G EV Sbjct: 6 ILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATKYDYSCILLDLMLPEMDGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR+ Sbjct: 66 AVKLRELK-DTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTESS 124 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA+ +I L+++ DA V G ++LT KEY+++ L+ N +E Sbjct: 125 KAEQNEPHARDMIEFKHLTIDNDAHKVLADGTPVNLTPKEYELLIFLAKTPNKVFDREQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ +A I+TVWG GY + DET Sbjct: 185 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSADAAKMIQTVWGVGYKFEVSKSDETT 241 >gi|33594716|ref|NP_882360.1| putative response regulator protein [Bordetella pertussis Tohama I] gi|33564792|emb|CAE44120.1| putative response regulator protein [Bordetella pertussis Tohama I] gi|332384127|gb|AEE68974.1| putative response regulator protein [Bordetella pertussis CS] Length = 226 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILLIED+ LA + L +V + +DG+ EFDAIILDLGL + Sbjct: 1 MRILLIEDEAELARWLSRSLARHAG--FVVEWADDGLLAERRLAVEEFDAIILDLGLPGM 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L +R TPV +L+ S+ ++V L GADD++ KPF EEL AR+ A++R Sbjct: 59 DGHTLLTRIRARDDRTPVLVLTARDSLAERVGTLHQGADDFLPKPFVLEELEARLTALIR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG + GDL+++ + V+G + L+ +E+ ++ L R L K+ L+ Sbjct: 119 RSRGREHPRLTLGDLALDTALQRFTVKGQPLALSPREHAVLRALIQRSGEPLNKQQILDR 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++ I+V + +LRKKL++ I T+ G GY L ENA D Sbjct: 179 IQSSDSDVNLEAIEVLVHRLRKKLADTG---VQIVTMRGMGYCL-ENAVD 224 >gi|325521874|gb|EGD00591.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD + +++ LK ++ V G + ++D ++LDLGL G Sbjct: 1 MRVLLIEDDAMIGEAVQDALKDASYAVDWAKTGTSASTALENQQYDLVVLDLGLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL ++R + PV +++ +++D++RGL GADDY+ KPF EL+AR+RA++RR Sbjct: 61 DVLTSIRATGNTVPVVVVTARDALDDRLRGLDGGADDYVLKPFEMVELLARLRAVLRRKN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A + G+ V+LD T E G + LT +E+ ++ L R L++ + Sbjct: 121 GGAAPTL--GNGVVSLDPATREASVHGGPLLQLTNREFALLRALLTRPGAILSRNDLEDR 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +Y +E E ++ I LR+KL G I V G G+++ +NA Sbjct: 179 IYGWGEEVESNAVEYLIHSLRRKL-----GGEIIRNVRGVGWMVSKNA 221 >gi|312197895|ref|YP_004017956.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229231|gb|ADP82086.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 248 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 124/224 (55%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA-IILDLGLTDIPGFE 61 ++++EDD +++ + L+ F V G + + + + +++D+ L D+ GFE Sbjct: 27 VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPDLDGFE 86 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V L+ PV LS +++D++RGL +GADDY++KPF+ EELVARIR I+RR RG Sbjct: 87 VCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRR-RG 145 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + G L ++ DA+ V V G I L+ EY+++ L +++ L+H++ Sbjct: 146 VLTEASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVW 205 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + E +++ FI LRKK+ A I TV G GY L E Sbjct: 206 DYGFDGESTVVETFISSLRKKVDTAP--PTLIHTVRGVGYRLSE 247 >gi|271961841|ref|YP_003336037.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505016|gb|ACZ83294.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 119/218 (54%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD ++ +++ L LK + V GEDG+E + D ++LDL L I GFE Sbjct: 3 RVLLIEDDPSVRNALTLALKGRDHEVESAASGEDGLERLARFAADVVVLDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A ST + +LS D V GL++GADDY+ KP + L ARIRA++RR+ G Sbjct: 63 VCRRIRAAS-STSIVMLSARGDDFDVVGGLEAGADDYVVKPVRPQVLEARIRAVLRRTDG 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L V+ + TV G +I L E +++ LS +++ L +++ Sbjct: 122 VPSPVETYGALCVDRASLTVSRGGRQIALPPIELRLLLYLSAAPGQVFSRQQLLESVWEH 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++D + +LR K+ + Y++TV G GY Sbjct: 182 DYLGDSRLVDACVQRLRAKIEDVPAEPKYVQTVRGFGY 219 >gi|186685384|ref|YP_001868580.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467836|gb|ACC83637.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 227 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L +ED+ +A+ + LK + F V D G++G E+D +ILD+ + G Sbjct: 1 MNVLFVEDEAKIANFVRAGLKEQGFVVDYCDNGDEGYLRALENEYDVLILDIMVPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV +L+ + ++D++ GL GADDYI+KPF EEL ARI A+VRRS Sbjct: 61 SILKLLRGQGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELAARIHAVVRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + Q+++ G + ++ + V I LT +E+ ++E L T+ L H++ Sbjct: 121 SNRQNILSVGPIRLDRITREVTCDRQAIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 P ++DV I ++RKK+ + +IE++ G GY R+ Sbjct: 181 YDFNPNTNVVDVCIQRIRKKI-DPIDEPVWIESIRGVGYRFRK 222 >gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM 13528] gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM 13528] Length = 228 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 133/222 (59%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ ++S + V + G+ + Y+ D ++LD+ L +I G + Sbjct: 7 KILIVDDDENICEVIKMYVESAGYETKVVNDGKTAETMFLEYKPDLVLLDIMLPNIDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL+ +R + TPV +L+ DKV GL+ GADDYI KPF +E++ARI+A++RR Sbjct: 67 VLKWIR-KEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRRYSV 125 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ L++++++ TV + I + KE++++ L+ KN T+E L ++ Sbjct: 126 DNENKEVLKFNQLTIDINSYTVVYKDDEIKMPPKEFELLHYLASNKNRVFTREQLLCEVW 185 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 G D P + + +DV + +LR+KL GG N+ IETVWG GY Sbjct: 186 -GYDYPGDSRTVDVHVKRLREKLQ---GGPNWQIETVWGVGY 223 >gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes] Length = 233 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 132/234 (56%), Gaps = 11/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G EV Sbjct: 1 MLVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR K++ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ G Sbjct: 61 TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120 Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A ++ I+ GDL + D+ V +Q + LT KE++++ L+ + +++ Sbjct: 121 AEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233 >gi|26986792|ref|NP_742217.1| DNA-binding heavy metal response regulator, putative [Pseudomonas putida KT2440] gi|148545318|ref|YP_001265420.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|167031082|ref|YP_001666313.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|170719251|ref|YP_001746939.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|325272074|ref|ZP_08138510.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|24981387|gb|AAN65681.1|AE016195_2 DNA-binding heavy metal response regulator, putative [Pseudomonas putida KT2440] gi|148509376|gb|ABQ76236.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166857570|gb|ABY95977.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169757254|gb|ACA70570.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] gi|324102770|gb|EGC00181.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A + L + V G DG+ L K +E++ IILD+ L ++ G+ Sbjct: 1 MRILVIEDEVKTAEYVRQGLTECGYVVDCVHTGSDGLFLAKQHEYELIILDINLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + + +L+ S + DKVRGL++GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 QVLELLRRKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARVRALMRRSD 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A +I DL ++ G RI LT KE+ ++ L L++ ++ ++ Sbjct: 121 HPASVEVIRVADLELDQSRHRAFRDGQRIDLTTKEFALLHYLMRNTGVVLSRTQIISQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 181 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 221 >gi|317056870|ref|YP_004105337.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449139|gb|ADU22703.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 234 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 13/228 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTD 56 R+L+ ED+ ++ + + L + V + GED + K YE FD +LD+ + Sbjct: 3 RVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDAL---KAYEENEGGFDVALLDIMMPG 59 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 I G +V + +R S + +LS S DK+ L SGADDYI+KPF+ EL+AR+ A+ Sbjct: 60 IDGMQVCKKIREKNNSVGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVC 119 Query: 117 RRSRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 RR A S I +G +NL ++TV +I LT EYQ++E +N L + Sbjct: 120 RRVNRSAVKPEEASTITSGPFVLNLKSRTVTKNNKQIDLTQVEYQIMEYFFKNQNAALDR 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LNH++ + KI+DV I ++R K+ + YI T+WG GY Sbjct: 180 SSILNHIWGESYYGDDKIVDVNIRRIRMKIEDEPSNPKYILTIWGFGY 227 >gi|83717734|ref|YP_439572.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] gi|167577990|ref|ZP_02370864.1| DNA-binding response regulator IrlR [Burkholderia thailandensis TXDOH] gi|167616115|ref|ZP_02384750.1| DNA-binding response regulator IrlR [Burkholderia thailandensis Bt4] gi|257142704|ref|ZP_05590966.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] gi|83651559|gb|ABC35623.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] Length = 229 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F + G G+ + E+D IILD+ L G+ Sbjct: 1 MRILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + STPV L+ + D+V+GL+ GADDY+ KPF+ ELVAR+R+I+RR + Sbjct: 61 TVLERLRRER-STPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ DL ++L + QG + LT KE+ ++ LL R+ L + + ++D Sbjct: 120 GRESTILKIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFNSDTNVVDAAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219 >gi|16761953|ref|NP_457570.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766477|ref|NP_462092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143440|ref|NP_806782.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415118|ref|YP_152193.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167551911|ref|ZP_02345664.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990273|ref|ZP_02571373.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231775|ref|ZP_02656833.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238132|ref|ZP_02663190.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243002|ref|ZP_02667934.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262866|ref|ZP_02684839.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463615|ref|ZP_02697532.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819761|ref|ZP_02831761.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445795|ref|YP_002042442.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449190|ref|YP_002047173.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472187|ref|ZP_03078171.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736474|ref|YP_002116131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247614|ref|YP_002148104.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262224|ref|ZP_03162298.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364047|ref|YP_002143684.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242500|ref|YP_002217155.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387607|ref|ZP_03214219.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928260|ref|ZP_03219460.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207858436|ref|YP_002245087.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213027201|ref|ZP_03341648.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052528|ref|ZP_03345406.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420412|ref|ZP_03353478.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424348|ref|ZP_03357172.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581572|ref|ZP_03363398.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213614424|ref|ZP_03371250.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647443|ref|ZP_03377496.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855234|ref|ZP_03383474.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827112|ref|ZP_06545901.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|291080733|ref|ZP_06534499.2| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|54038991|sp|P66796|QSEB_SALTI RecName: Full=Transcriptional regulatory protein qseB gi|54041930|sp|P66795|QSEB_SALTY RecName: Full=Transcriptional regulatory protein qseB gi|25300979|pir||AI0888 probable two-component system response regulator. STY3354 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421733|gb|AAL22051.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504255|emb|CAD03009.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29139074|gb|AAO70642.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129375|gb|AAV78881.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194404458|gb|ACF64680.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407494|gb|ACF67713.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458551|gb|EDX47390.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711976|gb|ACF91197.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633180|gb|EDX51594.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095524|emb|CAR61089.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211317|gb|ACH48714.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240479|gb|EDY23099.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289042|gb|EDY28413.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937016|gb|ACH74349.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604705|gb|EDZ03250.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322582|gb|EDZ07779.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323364|gb|EDZ11203.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331169|gb|EDZ17933.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333781|gb|EDZ20545.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337837|gb|EDZ24601.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343562|gb|EDZ30326.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348552|gb|EDZ35183.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710239|emb|CAR34596.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248307|emb|CBG26144.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301159731|emb|CBW19250.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914202|dbj|BAJ38176.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087628|emb|CBY97392.1| Transcriptional regulatory protein qseB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225855|gb|EFX50909.1| Two-component system response regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613580|gb|EFY10521.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621172|gb|EFY18030.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624235|gb|EFY21069.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628027|gb|EFY24816.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633144|gb|EFY29886.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636278|gb|EFY32986.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643531|gb|EFY40092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647452|gb|EFY43941.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648637|gb|EFY45084.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653689|gb|EFY50015.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657797|gb|EFY54065.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663898|gb|EFY60097.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669089|gb|EFY65240.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672916|gb|EFY69023.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678093|gb|EFY74156.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681269|gb|EFY77302.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687800|gb|EFY83767.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131537|gb|ADX18967.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195612|gb|EFZ80789.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199706|gb|EFZ84796.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202545|gb|EFZ87585.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207966|gb|EFZ92912.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212482|gb|EFZ97299.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215036|gb|EFZ99784.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222766|gb|EGA07131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224152|gb|EGA08445.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230476|gb|EGA14594.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235172|gb|EGA19258.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239212|gb|EGA23262.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244430|gb|EGA28436.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247046|gb|EGA31012.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253472|gb|EGA37301.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256222|gb|EGA39958.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262603|gb|EGA46159.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267302|gb|EGA50786.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269295|gb|EGA52750.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624931|gb|EGE31276.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332990043|gb|AEF09026.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 219 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + G + L KE+ ++ELL K L +++ LY+ Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V + LR+KL G +I TV G GY L Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216 >gi|295426129|ref|ZP_06818796.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295064165|gb|EFG55106.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 228 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 128/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLITTPDIALMILDIMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ ++S +S DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVR-KDSDIPIIVVSAKTSDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L +N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKDEKPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG++ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGY 224 >gi|227548509|ref|ZP_03978558.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079417|gb|EEI17380.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 268 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ALA ++ L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 42 RVLVVDDERALAQMVDSYLIRVGFDTRQAHTGIQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263 >gi|17548710|ref|NP_522050.1| response regulator for cobalt zinc cadmium resistance transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430959|emb|CAD17640.1| probable response regulator for cobalt zinc cadmium resistance transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 224 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L++ED+ + +LK + +V DL G DG+ +++D I+LD+ L + Sbjct: 1 MRLLIVEDEPKAG---DYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++V+R LR K +TPV L+ + D+++GL+ GADDY+ KPF ELVAR+ I+R Sbjct: 58 DGWQVIRELRRRK-TTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ DL+++ + V G RI LT KEY ++ LL+ R L++ + + Sbjct: 117 RGPMRESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + ++DV I +LR K+ + K I T+ G GYVL A+ Sbjct: 177 VWDVNFDSNTNVVDVAIRRLRAKVDDPFEHK-LIHTLRGMGYVLDTVAR 224 >gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34] gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34] gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34] gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34] gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in Cd(II), Zn(II), Co(II) resistance [Cupriavidus metallidurans CH34] Length = 225 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 125/221 (56%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A ++ L F V + + G DG+ + + ++D IILD+ L + G+ Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++++R +K TPV L+ + + D+VRG + GADDY+ KPF EL+ARIR +R+S Sbjct: 61 TVIKSIR-SKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL +++ + V RI LT +E+ ++ LL R+ L++ + ++ Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV I +LR K+ + K I TV G GYVL Sbjct: 180 VNFDTDTNVVDVAIRRLRSKVDDPFDQK-LIHTVRGMGYVL 219 >gi|332290136|ref|YP_004420988.1| DNA-binding transcriptional regulator BasR [Gallibacterium anatis UMN179] gi|330433032|gb|AEC18091.1| DNA-binding transcriptional regulator BasR [Gallibacterium anatis UMN179] Length = 220 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 120/225 (53%), Gaps = 11/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A+ + LK ++ V + GE + K +D ++LDLGL G Sbjct: 1 MRVLLVEDDPMIANVLSANLKDASYAVDWVENGELALTAVKSQPYDLVLLDLGLPKKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + S P+ IL+ + +++GL GADDYI KPF+ EL+ARIR +R+ Sbjct: 61 EVLAQLRQQQFSFPIIILTARDDLPSRLQGLDGGADDYIIKPFDMAELLARIRVALRKQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG----HRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 GH + I G+L +NL KT +VQ LT KE+ +++ L ++ + Sbjct: 121 GHHTAEIRYGNLLLNL--KTYQVQNLTTQETQQLTNKEFAILQTLLQHPGVIYSRSDLED 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y +E E ID I LRKKL GK I+ + G G+ + Sbjct: 179 KIYGWGEEVESNAIDFLIHALRKKL-----GKEAIKNIRGVGWTI 218 >gi|309778700|ref|ZP_07673474.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA] gi|308922550|gb|EFP68173.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA] Length = 225 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 M+IL+IED+ A + E +LK + +V D+ G DG L +D I+LD+ L Sbjct: 1 MKILVIEDE---ARTAEYLLKGLTESGFVVDIAANGMDGAHLASEVRYDLILLDVMLPGA 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ V++ +R K PV L+ + D+VRG + GADDY+ KPF EL+ARIR +R Sbjct: 58 DGWSVIKMIR-QKSDVPVLFLTARDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S G + GDL +++ + V G ++ LT +E+ ++ LL+ R L++ +H Sbjct: 117 QSSGRESEHLSVGDLDIDVLGRKVVRAGVKVELTSQEFVLLHLLARRSGEVLSRTSIASH 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + ++DV I +LR KL K I TV G GYVL Sbjct: 177 VWDVNFDTDTNVVDVAIRRLRAKLDEPFDTK-LIHTVRGMGYVL 219 >gi|229514729|ref|ZP_04404190.1| transcriptional regulator [Vibrio cholerae TMA 21] gi|229348709|gb|EEO13667.1| transcriptional regulator [Vibrio cholerae TMA 21] Length = 224 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 ALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + H + + DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ +LRKK+ + + I+T G GY L Sbjct: 181 GIHQDPLTNIVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221 >gi|21244208|ref|NP_643790.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21109847|gb|AAM38326.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 233 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED+ LA +I ++ + D DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++R Sbjct: 58 DGLRVLAGMRERGDATPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG A ++ G + A T+ + G I L +EY++ E+L R + K+ N Sbjct: 118 RNRGQASEVVQIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNG 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ D+ I++++ +LR+KL+ A I TV G GY L E Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220 >gi|13475522|ref|NP_107086.1| two-component system, regulatory protein [Mesorhizobium loti MAFF303099] gi|14026274|dbj|BAB52872.1| two-component system, regulatory protein [Mesorhizobium loti MAFF303099] Length = 221 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED+ +A + +LK+ V GE +DA ILDLGL + G Sbjct: 1 MKILLAEDEPRIAADVATVLKASGMAVDTVRDGEAAWFAGDVENYDAAILDLGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R PV IL+ ++V G+ +GADDY+ KPF EEL+AR+RAI+RRS Sbjct: 61 TILKRWRANARRFPVLILTARGMWTERVDGINAGADDYLPKPFEMEELLARLRAILRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ +G L ++ + ++G + L+ EY+++ L + HLYD Sbjct: 121 GQAAPVLKSGPLVLDTRQMRISLRGIPVALSPLEYRLLAFLMHHAGRVVAPTELAEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++V + +LR+KL G + IET G GY + ++ Sbjct: 181 SGNDRDPNAVEVIVARLRRKL-----GSDVIETRRGFGYFVPDD 219 >gi|291562930|emb|CBL41746.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 236 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 129/229 (56%), Gaps = 15/229 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A I L L E ++ + GE ++ ++ + I+LDL L + G++ Sbjct: 6 RILIVDDDENIAELISLYLMKECYDTKIVGDGESALKEVPVFKPNLILLDLMLPGMDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIRTTS-QVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 S+ + +L VNL +V +GH + + KE +++ L+ N T+ Sbjct: 125 APVSMSAATKQQGEYVEYPNLIVNLTNYSVLYKGHSVDMPPKELELLYFLASSPNQVFTR 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 E L+H++ + + +DV I +LR+K+ + +N+ + TVWG GY Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIRD---DENWALSTVWGIGY 230 >gi|226323502|ref|ZP_03799020.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758] gi|225208186|gb|EEG90540.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758] Length = 233 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 128/229 (55%), Gaps = 17/229 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GE+ + + Y+ + ++LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTMIVHDGEEALTAFESYQPNLMLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R +K +TP+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 66 VCREIR-SKHNTPIIMLSAKGEVFDKVLGLELGADDYVLKPFDSKELVARVKAVLRRYQP 124 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 SRG ++ + +NL V V G + + KE +++ L+ N T Sbjct: 125 AKPETPAASRG---KVVDYPGIEINLTNYAVTVDGKNVDMPPKELELLYFLASSPNQVFT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E L+ ++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 182 REQLLDQIWGYEYVGDTRTVDVHIKRLREKIKDHPSWG--LSTVWGIGY 228 >gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC BAA-286] Length = 221 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + ++ L+ E +++ + GE G+EL + + D I+LD L + G + Sbjct: 3 HILIIEDEPGIYTFLKQGLEEEGYSISIAVDGEQGVELFRTEKPDLILLDWVLPKMDGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R I+ P+ L+ +++D + GLQ GA+DYI KPF+ EEL+ RI+ R S Sbjct: 63 VCKAIRQEDINIPILFLTARDTVQDTIEGLQCGANDYIKKPFSFEELLERIKIHFRNSI- 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q ++ G++S+N V+++ I LT +E++++E L K ++ + ++ Sbjct: 122 -EQGILTLGNISLNSQTYEVQIEASDIALTHREFELLEFLIKNKGNVCKRDEIIEKVWGI 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +IDVFI +RKKL N YI+TV G GY+ E Sbjct: 181 NFEYDTGVIDVFINAIRKKL-NLDKDNGYIKTVRGVGYIANE 221 >gi|330505552|ref|YP_004382421.1| two-component response regulator KdpE [Pseudomonas mendocina NK-01] gi|328919837|gb|AEB60668.1| two-component response regulator KdpE [Pseudomonas mendocina NK-01] Length = 230 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+D+ + + + L ++++ V GEDG+ + D ++LDLGL D+ G +V Sbjct: 7 ILLIDDEAQIRKFLRIALSAQDYRVLEAVNGEDGLAQAALHNPDVVVLDLGLPDLDGQQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR PV +LS +S +KV L GA+DY++KPF +E +AR+R ++R+ +G Sbjct: 67 LRGLREWS-QVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQGQGR 125 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I G LS++L + V ++G I LT KEY ++ LL+ +T++ L ++ Sbjct: 126 EALPASIACGALSIDLAYRRVSLEGAEIALTPKEYAVLALLAQHLGRVVTQQQLLRDIWG 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V + LR+KL + Y+ T G GY LRE Sbjct: 186 PSHVGDSHYLRVVVGHLRQKLGDDPAAPRYLITEAGVGYRLRE 228 >gi|297194039|ref|ZP_06911437.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152078|gb|EFH31517.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 229 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 224 >gi|42784273|ref|NP_981520.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42740204|gb|AAS44128.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 225 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++L+ I L E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLSKKIVSGLTEEGHFILKLHNENEGLNIVYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K+ TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDY 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q + + DL V++ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 TQQNEPNFVQFKDLLVDVSSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 225 >gi|329902856|ref|ZP_08273276.1| two component heavy metal response transcriptional regulator, winged helix family [Oxalobacteraceae bacterium IMCC9480] gi|327548595|gb|EGF33254.1| two component heavy metal response transcriptional regulator, winged helix family [Oxalobacteraceae bacterium IMCC9480] Length = 227 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ +A + L E F V + G DG L +D IILD+ L D+ G+ Sbjct: 1 MKLLVVEDETKIADYLRQGLTEEGFAVDLARNGLDGHHLAMTAPYDLIILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +L++LR A + PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R +RR S Sbjct: 61 RILQSLRDAGKNVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTQLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +L ++ + G RI+LT KE+ ++ELL+ + L++ + + ++ Sbjct: 121 PAINADRFQIANLELDYLCRRATRSGQRINLTAKEFALLELLARHQGEVLSRALIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I TV G GY L Sbjct: 181 DINFDSDTNVIDVAIRRLRAKMDDDFEPK-LIHTVRGMGYRL 221 >gi|268592132|ref|ZP_06126353.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] gi|291312530|gb|EFE52983.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] Length = 227 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V + G G+ + ++D IILD+ L DI G+ Sbjct: 1 MKLLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDYDLIILDVMLPDINGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ ++LR + +TP+ +L+ + ++E +V+GL+ GADDY+ KPF+ EL+AR+R ++RR Sbjct: 61 EIAKSLRNSGKNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLLRRGN 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q T +L V+L + V + +I LT KE+ ++E L + L++ + + ++ Sbjct: 121 SSIQKTQFTIANLHVDLIKRRVTRENDKIILTSKEFSLLEFFILHQGEVLSRSLIASKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV + +LR K+ K I T+ G GY+L Sbjct: 181 DMNFDSDTNVIDVAVKRLRAKIDQGYEPK-LIHTIRGMGYLL 221 >gi|171779491|ref|ZP_02920455.1| hypothetical protein STRINF_01336 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282108|gb|EDT47539.1| hypothetical protein STRINF_01336 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 224 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 ++ILL+EDD +L++SI L +NF +V GE+G+ + +D I+LDL L + G Sbjct: 2 IKILLVEDDLSLSNSIFDFL--DNFADVMQVFDGEEGLYEAESGVYDLILLDLMLPEKDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F+VL+ LR I+TPV I++ S+ DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 60 FQVLKELREQGITTPVLIMTAKESLNDKGHGFELGADDYLTKPFYLEELKMRIQALLKRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + +L+ + T V G ++ L GKE+ ++ +N L K + ++ Sbjct: 120 GKFNDNTLSYHELTADTSTNTTTVNGKKVELLGKEFDLLVYFLQNQNVILPKSQIFDRIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL + KN ++T+ GY+L++ Sbjct: 180 GFDSDTTISVVEVYVSKIRKKLKGTSFAKN-LQTLRSVGYILKD 222 >gi|160878314|ref|YP_001557282.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426980|gb|ABX40543.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 238 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 16/230 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E F+ + GE+ I + Y+ + I+LDL L I G+E Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 V R +R K ST P+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 66 VCREVR--KTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVV 123 Query: 119 -SRGHAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 S+ ++ +I DL +N +V G I + KE ++ L+ N Sbjct: 124 PSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVF 183 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 T+E L+H++ + + +DV I +LR+K+ + + + TVWG GY Sbjct: 184 TREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWR--LSTVWGIGY 231 >gi|313622522|gb|EFR92939.1| regulatory protein VanR [Listeria innocua FSL J1-023] Length = 231 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G + L + + +ILD+ + + G EV Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPKMNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 65 CRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q+ ++ G + V+ V V +HLT E+ ++ LL+ + E Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL +A GG+N I+T+WG GY Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGY 227 >gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 240 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+KA+ ++ L+ EN+ V G+D +E + FD +ILDL L +PG Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA++RR Sbjct: 70 VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 ++ ++ G+L++++ V V G + LT E++++ LS ++ E Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L + ++G + + ID + LR K+ + ++ TV G GY + K Sbjct: 189 LGYDFEGYE----RTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTK 236 >gi|229020326|ref|ZP_04177092.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|228740962|gb|EEL91194.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 222 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I L E + G+ + ++D IILD I G E+ Sbjct: 1 MLVIKNERSLAKKIVCGLTQEGHFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R+ K +TP+ I++ S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 61 CRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSEYI 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQNETNFFQFKDLFVDASSNIVKKSGENLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GDNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 222 >gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus pseudintermedius ED99] Length = 233 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 131/230 (56%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+V G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIYEKEPDIVLLDIMLPGQDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYT 122 Query: 119 ---SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H Q+ +T D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPSQENHMQTNEITIKDIVIYPDAYSIKKRGEDIDLTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + +YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPDYIVTRRGVGYFLQQH 232 >gi|317491839|ref|ZP_07950274.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920273|gb|EFV41597.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 223 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL++ED+ L H + + ++ V D ED E K D I+DLGL Sbjct: 1 MRILVVEDNGLLRHHLSVQMRDMGHQV---DAAEDAKEADFFVKEQTPDIAIVDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +I P+ +L+ S +DKV L++GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRAEQIKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + V + I LT EY +IE L ++K+ + Sbjct: 118 RNSGLASQVITLPPFQIDLSRRELTVNENLIKLTAFEYTIIETLIRNHAKVVSKDALMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKKL N + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLQNEY-PQEVITTVRGQGY 218 >gi|312138449|ref|YP_004005785.1| two component system response regulator [Rhodococcus equi 103S] gi|311887788|emb|CBH47100.1| two component system response regulator [Rhodococcus equi 103S] Length = 231 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 119/214 (55%), Gaps = 6/214 (2%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G +++ DA++LD+ + + G V+ ALR A P Sbjct: 17 SLERGLRLSGFTVLTASDGAVALKVVAEAAPDAVVLDMNMPVLDGTGVVTALRRAGNEVP 76 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-----SRGHAQSLIVT 129 +C+LS SS++D++ GL+SGADDY+ KPF ELVARIRA++RR + IV Sbjct: 77 ICVLSARSSVDDRIAGLESGADDYLVKPFVLAELVARIRAMLRRRSVAVAATDTDPPIVV 136 Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189 G LSV+L + V + I LT +E+++ E+L+ L++E L+ ++ + + Sbjct: 137 GPLSVDLAGRRVWLGDTEITLTKREFELTEVLARNAGVVLSRERLLDLVWGYDFVADTNV 196 Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +DVF+ LR+K G + TV G G+VLRE Sbjct: 197 VDVFVGYLRRKF-EIDGTPRLVHTVRGVGFVLRE 229 >gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium kansasii ATCC 12478] Length = 240 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 15 RILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDAVILDVMMPGMDGFG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLR LR + P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ + Sbjct: 75 VLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A+ S + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 135 GSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 238 >gi|228941849|ref|ZP_04104396.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974774|ref|ZP_04135340.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981369|ref|ZP_04141669.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407] gi|228778569|gb|EEM26836.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407] gi|228785177|gb|EEM33190.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818061|gb|EEM64139.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942455|gb|AEA18351.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ E+D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A I R R Sbjct: 63 ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|225025447|ref|ZP_03714639.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC 23834] gi|224941731|gb|EEG22940.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC 23834] Length = 226 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ +A +EL L +F + E +L FD ++LD+GL D GFE+ Sbjct: 5 ILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTDGFEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+ LR + PV +L+ D++ GL+ GADDYI KPF+ ELVAR++A++RR++ Sbjct: 65 LKTLR-PQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQTR 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S+ V D ++ A + QG + LT EY+++ L R ++E L + Sbjct: 124 PAAKTESVPVWHD---DVPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAM 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + G + I+ I LR KL A +I T G GY E Sbjct: 181 FGGNRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFNET 226 >gi|161616164|ref|YP_001590130.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365528|gb|ABX69296.1| hypothetical protein SPAB_03966 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|267995367|gb|ACY90252.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] Length = 270 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 52 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 111 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + G + L KE+ ++ELL K L +++ LY+ Sbjct: 172 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V + LR+KL G +I TV G GY L Sbjct: 232 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 267 >gi|78049167|ref|YP_365342.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037597|emb|CAJ25342.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 233 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED+ LA +I ++ + D DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++R Sbjct: 58 DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG A ++ G + A T+ + G I L +EY++ E+L R + K+ N Sbjct: 118 RNRGQASEVVQIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNG 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ D+ I++++ +LR+KL+ A I TV G GY L E Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220 >gi|134291789|ref|YP_001115558.1| two component heavy metal response transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134978|gb|ABO59303.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 225 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ F+V + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL+ R+ L++ ++++D Sbjct: 120 PRETEHLAVGDLEIDVVRRRVKRGAVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIHTVRGVGYVL 219 >gi|294624402|ref|ZP_06703094.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601300|gb|EFF45345.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 233 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED+ LA +I ++ + D DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++R Sbjct: 58 DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG A ++ G + A T+ + G I L +EY++ E+L R + K+ N Sbjct: 118 RNRGQASEVVQIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNG 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ D+ I++++ +LR+KL+ A I TV G GY L E Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220 >gi|254496524|ref|ZP_05109395.1| DNA-binding response regulator [Legionella drancourtii LLAP12] gi|254354263|gb|EET12927.1| DNA-binding response regulator [Legionella drancourtii LLAP12] Length = 222 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 5/221 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +L+EDD+ L +++ L + V GE K F+ IILDLGL + G +L Sbjct: 1 MLVEDDELLGDAVKTGLTQFGYIVDWLKDGEAARAALKSESFELIILDLGLPKLSGLALL 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + +R STPV IL+ S+ED+++GL SGADDY+ KPF+ EL ARIRA+VRRS+G A Sbjct: 61 QNIRHDGNSTPVIILTARESVEDRIKGLDSGADDYLVKPFDLNELSARIRALVRRSQGRA 120 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 S++ +++++ A +V V +++ +E+ +++ L L++E + +Y + Sbjct: 121 DSVLQYKNITLDPAAHSVLVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYGWEE 180 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++V I LRKKL+ N+I T+ G GY+ +N Sbjct: 181 DVDSNALEVHIHNLRKKLN-----ANFIRTIRGVGYMAEKN 216 >gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional regulator [Teredinibacter turnerae T7901] gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Teredinibacter turnerae T7901] Length = 233 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED + + I L L++ N+ V G+ G+ L FD IILD+ L I G ++ Sbjct: 5 ILVIEDQEEINELIALNLETLNYTVTRALDGDIGLNLSLNTRFDLIILDVMLPGIDGLQI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR A + TP+ +L+ S D+V GL+ GADDY++KPF+ EL AR+RA++RR + Sbjct: 65 CQKLRSAGVLTPILMLTAKKSEADRVVGLEVGADDYLTKPFSVRELQARVRALLRRVAFN 124 Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q +V GDLS+N + V + I LT KE+ ++ L+ +++ Sbjct: 125 TQETNPTAGPDQLVFGDLSINKNKHVVTLADEEIKLTAKEFDLLLYLASSPGQVFSRDQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ ++ ++ I +LR KL A Y+ TVWG GY E Sbjct: 185 LSAVWGYHHSGYEHTVNSHINRLRAKLEPNASEPRYVLTVWGVGYKFYE 233 >gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R] gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R] Length = 226 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 126/219 (57%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++DD A++ + ++L +E F+ V VTD G +E + D I+LDL L + G Sbjct: 4 KILVVDDDPAISEMLTIVLSAEGFDTVAVTD-GALAVETASREQPDLILLDLMLPGMNGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R +R + S P+ +L+ + D V GL+SGADDY++KPF +ELVARIRA +R + Sbjct: 63 DICRLIR-QESSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATV 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDLS+++ A TV+ G I LT E+ ++ L+ + T+E L ++ Sbjct: 122 DEPSEILEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGY 220 >gi|328882803|emb|CCA56042.1| DNA-binding response regulator mtrA [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220 >gi|227487463|ref|ZP_03917779.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227092687|gb|EEI27999.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 240 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 14 RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 74 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR+ LT+ + Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRRGQALTRHDLVT 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235 >gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 235 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ + + L L+ F V + G + +E + D ++LD+ L I G+ Sbjct: 1 MRILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 V R LR + P+ +L+ + D+V GL++GADDY+ KPF +EEL+ARIRA++RR+ Sbjct: 61 AVCRILR-RESDVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTP 119 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G ++ G L +++ A+ G R++LT KE+ ++ LL+ L + + Sbjct: 120 RVEGRPADRVIAGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIER 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +V+ +D + LR KL A ++ IETV GY L Sbjct: 180 VWGWDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRL 223 >gi|302554205|ref|ZP_07306547.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302471823|gb|EFL34916.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 219 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 9/221 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +++ED+K LA S+ L +E + V V G +G+ +D +ILD+ L + G+ V Sbjct: 1 MIVEDEKRLALSLARGLTAEGYAVDVVHDGREGLHQASEGTYDLVILDIMLPGLNGYRVC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121 ALR A P+ +L+ D+ GL +GADDY++KPF+ LVARI+A++RR RG Sbjct: 61 AALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRR-RGVG 119 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + V GDL V+ A+ V + I LT KE+ ++E L LR ++K L H++D Sbjct: 120 AGASPVHVHGDLKVDTAARRVFLGDDEIALTAKEFSVLEHLVLRAGEVVSKSEILEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + I++V++ LR+KL I TV G GY L Sbjct: 180 FAYEGDPNIVEVYVSTLRRKLR-----AGLIRTVRGAGYRL 215 >gi|257455665|ref|ZP_05620894.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60] gi|257446948|gb|EEV21962.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60] Length = 225 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 122/223 (54%), Gaps = 11/223 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNV-YVTD--LGEDGIELCKFYEFDAIILDLGLTDIP 58 RILLIEDD +A I L +N V + D LGE I F DA++LDL L Sbjct: 3 RILLIEDDATIADGIVKGLSQQNMMVDWFADAKLGEMAIHEGVF---DAVLLDLTLPRGD 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +L R KI TPV I++ +I ++V GL +GADDY+ KPF +E+VAR++A++RR Sbjct: 60 GMTILANWRQQKIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALIRR 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+G +Q+ I GD+S + V QG + LT KE ++E N ++ + L Sbjct: 120 SQGRSQTEIRYGDVSYLPQQQQVFYQGKWVDLTAKEITVLEQFISYPNLVHSRASLEDKL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y + + E I+V I LRKKL N ++I T G GY L Sbjct: 180 YGWQQDIESNAIEVHIHNLRKKLGN-----DFILTRRGIGYYL 217 >gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516] gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516] Length = 233 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+ED+ + ++ L E F + + GE G+EL + + D +LD+ L I GF Sbjct: 7 IKVLLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNKPDVAVLDIMLPGIDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR + + +L+ + DK+ GL+ GADDY++KPFN EL+ RI++++RRS Sbjct: 67 EVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSP 126 Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + D + LD ++T G I LT E +I+LL +T++ ++ Sbjct: 127 QKQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELNIIKLLMQNPGKAITRDELMDKA 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + KI+DV + +LR K+ + YI TVWG GY Sbjct: 187 WGEDFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGY 227 >gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] Length = 235 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G E Sbjct: 4 QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR++G Sbjct: 64 VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + + G L V + V + LT KE++++ L N TLT+E Sbjct: 124 KQEGDDSDNIADNSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234 >gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6] gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae TIGR4] gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39] gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54] gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397] gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457] gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458] gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae] gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6] gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39] gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54] gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV104] gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV200] gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458] gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457] gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397] gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375] gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545] gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301] gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570] gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317] gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901] Length = 235 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G E Sbjct: 4 QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR++G Sbjct: 64 VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + G L V + V + LT KE++++ L N TLT+E Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234 >gi|310658906|ref|YP_003936627.1| DNA-binding response regulator in two-component system with yedv [Clostridium sticklandii DSM 519] gi|308825684|emb|CBH21722.1| DNA-binding response regulator in two-component system with YedV [Clostridium sticklandii] Length = 225 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 130/219 (59%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED+K L++++ ++L N+ V GED + + ++D IILD+ + + G+ Sbjct: 1 MKILLAEDEKELSNALVMLLSHNNYVVDAVYDGEDALSYAQEIDYDIIILDIMMPKLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR P+ +L+ S ++DKV GL+ GADDY++KPF +EL+ARI+A++RR + Sbjct: 61 QVLSKLREKNCKAPILMLTAKSHVDDKVTGLELGADDYLTKPFEMKELLARIKALLRRPQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GD+ +N D + ++ L KE+Q +ELL L L+K++ ++ ++ Sbjct: 121 NFNADILEFGDMYLNRDTCQIICNNQQVVLNKKEFQTMELLILNSKQILSKDLIMDKIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E+ ++ V I LRKKL+ K I ++ G GY Sbjct: 181 YESDAEINVVWVNISSLRKKLAK-LDSKVTIASIRGLGY 218 >gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] Length = 236 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ + L+ E + V ++ G++G EL ++D IILD+ L + G E Sbjct: 3 KVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +ALR KI TP+ IL+ DK+ GL+ GADDY++KPF+ E++AR++AI RR + Sbjct: 63 ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ +V G++ V+ V V+ I LT KE++++ RK+ + +E Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ + +I+DV I LR K+ Y+ TV G GY +E + Sbjct: 183 NLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236 >gi|257870932|ref|ZP_05650585.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805096|gb|EEV33918.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 224 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 23/233 (9%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGE-----DGIELCKFYE-----FDAIIL 50 +++LLIEDD+ L SEN V ++GE DG E YE +D IIL Sbjct: 2 IKLLLIEDDRTL---------SENIKEIVAEIGEISQAFDGSE--GLYEAQSGIYDLIIL 50 Query: 51 DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110 DL L ++ G+EVL LR + TPV IL+ +EDKV G Q GADDY++KPF +EEL+ Sbjct: 51 DLMLPEMNGYEVLAKLRQHTVQTPVLILTAKDGLEDKVAGFQKGADDYLTKPFYREELLM 110 Query: 111 RIRAIVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 R +A+++RS G ++ +V L+ NL V + + + GKE+ ++ + L Sbjct: 111 RCKALLKRSLGLFNENQVVYKGLTCNLSTNEVTIDEKLLPIQGKEFALLVYFLQNRGIIL 170 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 TKE + ++ E + +++V+I LRK L + K I T+ GY+++ Sbjct: 171 TKEQIFDRIWGFDSETTITVVEVYISNLRKHLRDTGIDKE-IRTLRNVGYIMQ 222 >gi|218551391|ref|YP_002385183.1| DNA-binding transcriptional regulator BasR [Escherichia fergusonii ATCC 35469] gi|218358933|emb|CAQ91593.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia fergusonii ATCC 35469] gi|325499660|gb|EGC97519.1| DNA-binding transcriptional regulator BasR [Escherichia fergusonii ECD227] Length = 229 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD L + L ++E + + + + ++LDLGL D G Sbjct: 7 MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQFLESGHYSLVVLDLGLPDEDGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R K + PV IL+ ++ DK+ GL GADDY+ KPF EEL ARIRA++RR Sbjct: 67 HFLARIRQKKHTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S + G+L + + + V + + LT KEY ++ L L+ + + +E+ N +Y+ Sbjct: 127 TQGESELNIGNLKLIMGRRQVWMGNEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +EP ++V I LR K+ GK I TV G GY+L Sbjct: 187 WDNEPSTNTLEVHIHNLRDKI-----GKERIRTVRGFGYML 222 >gi|254251504|ref|ZP_04944822.1| two component transcriptional regulator [Burkholderia dolosa AUO158] gi|124894113|gb|EAY67993.1| two component transcriptional regulator [Burkholderia dolosa AUO158] Length = 269 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 118/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G D FD +ILDLGL + G Sbjct: 27 MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 87 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 147 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ I TV G GY L Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPIG---VRISTVRGLGYCL 244 >gi|119776666|ref|YP_929406.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119769166|gb|ABM01737.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 225 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD + I + N+ G G+ L ++D IILD L + G Sbjct: 1 MKILLVEDDNTTSEYIVKGFSEQGHNIEAAADGHQGLLLATSNQYDLIILDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ALR TPV ILS +S+++++V+GL+SG DDY++KPF EL+ R +V R + Sbjct: 61 ALLAALRANANQTPVLILSALSNVDERVKGLRSGGDDYMTKPFAFSELLVRAEILVSRGQ 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ + G L + L + V + GH + L KE+Q+++ L N +++ + ++ Sbjct: 121 TAPVQTHLQAGPLEMELLTRNVTLDGHELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D +P +IDV I KLR+K G+ IETV G GY LR+ Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGYGE-LIETVRGAGYRLRQ 223 >gi|332711236|ref|ZP_08431169.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332350050|gb|EGJ29657.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 224 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+ L + +L E + V V G G EL +D +ILD L I G Sbjct: 1 MRILLVDDEIELTDPLSRVLTREGYTVDVAYNGASGNELACVGAYDLLILDWMLPHISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R +TPV L+ +++D+V GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 EICQQMRSHDATTPVLFLTAKDTVDDRVMGLDAGADDYLVKPFELRELLARVRALLRRSA 120 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H + G L ++L+ + GH I L+ KE Q++ L+ + H Sbjct: 121 ATDAHPSQRLRVGQLELDLNNQIAYRHGHPIELSEKESQLLGYFMSHVGLLLSHKQIYQH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ + P+ + + LR+K+ G I TV+G+GY Sbjct: 181 LWPSEEIPKSNNLAALVRLLRRKI-EIKGSAPLIHTVYGKGY 221 >gi|325830179|ref|ZP_08163636.1| putative response regulator MprA [Eggerthella sp. HGA1] gi|325487646|gb|EGC90084.1| putative response regulator MprA [Eggerthella sp. HGA1] Length = 245 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 2/232 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD LA ++ +L + V G G+ + ++D IILD+ L + GF Sbjct: 9 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR IS PV +L+ ++ DK+ GL SGADDY++KPF EL+A +RA+ RR Sbjct: 69 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +NL++ + IHL+ KE+ + ++L ++K+M + ++ Sbjct: 129 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKDETCE 231 E ++ ++ LRKK+ G IET+ GY + + A D+ E Sbjct: 189 VESSAEDNNVEAYVSFLRKKM-KFLGSTARIETLRRAGYRFVADAAPDDASE 239 >gi|262163484|ref|ZP_06031230.1| transcriptional regulator [Vibrio cholerae INDRE 91/1] gi|262028051|gb|EEY46710.1| transcriptional regulator [Vibrio cholerae INDRE 91/1] Length = 224 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + H + + DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERVLANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ +LRKK+ + + I+T G GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221 >gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC 15579] gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC 15579] Length = 227 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + IE+ LKSE ++V GE+ + L Y +D +ILD+ + + G Sbjct: 4 KILVVDDDITIKNLIEVYLKSEGYDVDNASNGEEALNLIGDYNYDLVILDIMMPKLDG-- 61 Query: 62 VLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +++ K + P+ LS DK++GL GADDYISKPF EL+AR++A +RR + Sbjct: 62 ILTCIKIREKFTMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQLRRYK 121 Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++++I DL +N+D V V+G I LT KE+ ++E L+ K + E Sbjct: 122 KFNSITISKNIIEIEDLVINVDTHEVNVRGENIKLTSKEFNILECLARNKGIVFSVEKLY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I +R+K+ YI+TVWG GY Sbjct: 182 ETVWKEKFVVSDTSVVVHITNIRQKIEIDPKAPQYIKTVWGVGY 225 >gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 226 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++ L+ IEL LK E + + + G G+E+ + E D ++LD+ L +I G Sbjct: 2 VKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVLR LR P+ +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR +++ Sbjct: 62 EVLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I G LS++ V I LT +E+ ++++L KN LT+ + + Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +IDV+I LR K+ +A K I TV G GYV+++ Sbjct: 181 VCGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKD 225 >gi|56708575|ref|YP_170471.1| two component response regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|110671046|ref|YP_667603.1| two component response regulator [Francisella tularensis subsp. tularensis FSC198] gi|118498024|ref|YP_899074.1| two-component response regulator [Francisella tularensis subsp. novicida U112] gi|134301473|ref|YP_001121441.1| two component response regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|187931193|ref|YP_001891177.1| two component response regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|194323249|ref|ZP_03057033.1| two component response regulator [Francisella tularensis subsp. novicida FTE] gi|224457753|ref|ZP_03666226.1| two component response regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|254371203|ref|ZP_04987205.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254373380|ref|ZP_04988868.1| hypothetical protein FTCG_00968 [Francisella tularensis subsp. novicida GA99-3549] gi|254875432|ref|ZP_05248142.1| two component system response regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|54112897|gb|AAV29082.1| NT02FT1880 [synthetic construct] gi|56605067|emb|CAG46176.1| two component response regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|110321379|emb|CAL09559.1| two component response regulator [Francisella tularensis subsp. tularensis FSC198] gi|118423930|gb|ABK90320.1| two-component response regulator [Francisella novicida U112] gi|134049250|gb|ABO46321.1| two component response regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|151569443|gb|EDN35097.1| hypothetical protein FTBG_00969 [Francisella tularensis subsp. tularensis FSC033] gi|151571106|gb|EDN36760.1| hypothetical protein FTCG_00968 [Francisella novicida GA99-3549] gi|187712102|gb|ACD30399.1| two component response regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|194322613|gb|EDX20093.1| two component response regulator [Francisella tularensis subsp. novicida FTE] gi|254841431|gb|EET19867.1| two component system response regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|282159799|gb|ADA79190.1| two component response regulator [Francisella tularensis subsp. tularensis NE061598] gi|332678746|gb|AEE87875.1| response regulator in two-component regulatory system with PhoQ [Francisella cf. novicida Fx1] Length = 229 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 133/225 (59%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +DDK +A I+ + + V G++ + L +D I++D + + G Sbjct: 6 KVLVADDDKKIAQFIKTKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWMMPYLDGIS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L+ LR I+TPV ILS + S E+K+ GL+SG+DDY++KPF+ +EL+ R+ + +R++ Sbjct: 66 LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125 Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 AQ+ ++ GD+ ++ A V I L +EY+++ LL KN ++K M L + Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D +P+ +++V I +LR KL+ G + I+T+ G GYV++E Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLT-EGGLSDPIKTIRGFGYVIQE 229 >gi|300857093|ref|YP_003782077.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300437208|gb|ADK16975.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 232 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD+ + + I L S+ + TD G +GI L + D IILDLGL DI G EV Sbjct: 7 ILVIEDDRPIRNFITAALSSQGYKYIETDKGNEGISLVMSHNPDLIILDLGLPDIDGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-----IVR 117 + +R + P+ ++S + KV L GADDY++KPF+ EL+ARIR IV Sbjct: 67 IEKVR-GWSNIPIIVVSARGNERQKVEALDKGADDYLTKPFSISELLARIRVSLRHLIVN 125 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + LS++ D + V V+G IHLT EY+++ LL LT + Sbjct: 126 KDQHEILNNFKVKRLSIDFDKRRVTVEGKEIHLTPIEYKIMALLCKYSGKVLTHNFIIRE 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E K + VF+ LR+K+ YI T G GY L Sbjct: 186 IWGSSLGSETKSLRVFMANLRRKIEKDPAQPEYIYTEVGVGYRL 229 >gi|28198188|ref|NP_778502.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|182680822|ref|YP_001828982.1| two component transcriptional regulator [Xylella fastidiosa M23] gi|28056258|gb|AAO28151.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|182630932|gb|ACB91708.1| two component transcriptional regulator, winged helix family [Xylella fastidiosa M23] gi|307579290|gb|ADN63259.1| two component transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 231 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 128/237 (54%), Gaps = 12/237 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MR+LLIED+ LA +I ++ + D DG+ + ++ FD ++LD+GL + Sbjct: 1 MRLLLIEDNADLADAIIRRMRRHG---HAVDWQSDGLAAAGVLRYQRFDLVVLDIGLPSL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L LR +TPV IL+ +IED+V L GADDY+SKPF+ E AR R ++R Sbjct: 58 DGLQLLSELRQRGDTTPVLILTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+RG+A ++ G + A + + G I L +EY+++E+L R + K+ N Sbjct: 118 RNRGNASEVVRIGGFEFDNAAHRICLNGEPIKLPNREYRLLEILIARLGQIVGKDEIGNS 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKDETCE 231 L++ D I++++ +LR+KL A I TV GY+L E E C+ Sbjct: 178 LFNFDDNAGPNAIELYVARLRRKLEAA---PLRIVTVRRAGYLLEPIVEARGHEACD 231 >gi|17549773|ref|NP_523113.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17432028|emb|CAD18705.1| probable two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 246 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 128/241 (53%), Gaps = 16/241 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIEL---------CKFYEFDAIIL 50 MR+LL+EDD + ++ L+ + F + +V D GE ++ FD ++L Sbjct: 4 MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRD-GEAAVQAIGAPGAASEAGGSMFDLMLL 62 Query: 51 DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110 DLGL G +V+ +R I+ P+ IL+ ++ D+V GL +GADDY+ KPF+ +EL A Sbjct: 63 DLGLPKRDGLDVVHEVRRRGITLPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAA 122 Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R+ A++RR G A L+ G++ +N + V G I L+G+E+ ++ L R + Sbjct: 123 RMHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGMPIKLSGREFAVLHALLSRPGKVWS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 ++LY +E ++V+I LRKKL G ++I+ + G GYV+ A Sbjct: 183 IAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREAPTPPA 237 Query: 231 E 231 E Sbjct: 238 E 238 >gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC 25986] gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC 25986] Length = 231 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+KA+A + + L E F+V + G D + EFD +LD+ L DI GFE Sbjct: 4 RILVVDDEKAIADLVGIYLTKEGFDVQIAYSGADAAKAILEQEFDLALLDVMLPDIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +LR +R + + PV +L+ + +DK+ GL GADDY+ KPF EL+AR+ A +RR Sbjct: 64 LLRTIRSSH-TYPVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQLRRYTS 122 Query: 119 --SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A I L +N DA++V V G + LT EY ++ L + + + E Sbjct: 123 YGSRAQAAESPTIQLDGLEINRDARSVTVDGSPVRLTPTEYSILLYLVEHRGSVVAVEDL 182 Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ P + V I LR+K+ + A +I+ VWG GY++ Sbjct: 183 FRAVWNEDFMPGSNNTVMVHIRHLREKIGDDAQKPRFIKNVWGVGYII 230 >gi|292488012|ref|YP_003530889.1| response regulator phoP [Erwinia amylovora CFBP1430] gi|292899230|ref|YP_003538599.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291199078|emb|CBJ46189.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291553436|emb|CBA20481.1| Response regulator phoP [Erwinia amylovora CFBP1430] gi|312172136|emb|CBX80393.1| Response regulator phoP [Erwinia amylovora ATCC BAA-2158] Length = 222 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + L+ V D ED E F + D ++DLGL D Sbjct: 1 MRVLVVEDNPLLRHHLAVQLREMGHQV---DAAEDAKEADYFLNEHTPDITLVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++ P+ +L+ + KV L++GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGMALIRRWRTQEVRQPILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + +I LT EY +IE L ++K+ + Sbjct: 118 RNCGLASQIITLQPFQVDLSRRELTINDRQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAEHAQEVITTVRGQGY 218 >gi|260663755|ref|ZP_05864642.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|260551704|gb|EEX24821.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 245 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 ++IL+++DDK + +E+ ++E + G+D I +L + +ILDL + ++ G Sbjct: 17 VKILIVDDDKEIVQLLEIYARNEGYEPVSAYNGKDAITKLNTMPDISLVILDLMMPEMNG 76 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V+R +R S P+ +LS ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 77 MDVIRQVR-KDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRS 135 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L +N D+ V+ ++G +I LT E+ ++ LL+ N + + Sbjct: 136 ENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGILYLLASHPNRVFSADDI 195 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG+ IETVWG GY Sbjct: 196 FERVWQQESVVSAKTVMVHVSHLRDKIEVATGGEKVIETVWGVGY 240 >gi|157373420|ref|YP_001472020.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157315794|gb|ABV34892.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 227 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 131/223 (58%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLI+DD L+ + +L+ E F + + G++G++L +FD I+LD+ L + GFE Sbjct: 3 QILLIDDDLGLSELLAQLLELEGFELTLAHDGQEGLKLALEKQFDLILLDVMLPKLNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL+ALRV+K TPV +L+ D+V GL+ GADDY+ KPFN ELVARI+AI+RRS Sbjct: 63 VLKALRVSK-QTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIKAIIRRSNI 121 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A ++ GD+ ++ + V Q + LTG E+ ++ + ++KEM Sbjct: 122 LPEEKATTVYEYGDIQLDPGRQEVFCQDQLLILTGTEFGLLFEMLQNGGELISKEMLSEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + P + +D+ + LRKKL G+ ++T+ G+GY+ Sbjct: 182 VLGKKLMPFDRSLDMHLSNLRKKLPERTDGRPRVKTIRGKGYI 224 >gi|54294190|ref|YP_126605.1| hypothetical protein lpl1254 [Legionella pneumophila str. Lens] gi|54297210|ref|YP_123579.1| hypothetical protein lpp1255 [Legionella pneumophila str. Paris] gi|148358833|ref|YP_001250040.1| DNA-binding response regulator [Legionella pneumophila str. Corby] gi|296106878|ref|YP_003618578.1| DNA-binding response regulator [Legionella pneumophila 2300/99 Alcoy] gi|53750995|emb|CAH12406.1| hypothetical protein lpp1255 [Legionella pneumophila str. Paris] gi|53754022|emb|CAH15493.1| hypothetical protein lpl1254 [Legionella pneumophila str. Lens] gi|148280606|gb|ABQ54694.1| DNA-binding response regulator [Legionella pneumophila str. Corby] gi|295648779|gb|ADG24626.1| DNA-binding response regulator [Legionella pneumophila 2300/99 Alcoy] gi|307610003|emb|CBW99535.1| hypothetical protein LPW_13061 [Legionella pneumophila 130b] Length = 225 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/200 (37%), Positives = 117/200 (58%), Gaps = 8/200 (4%) Query: 28 YVTDL---GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84 YV D GE K F+ IILDLGL + G +L+ +R STPV IL+ SI Sbjct: 25 YVVDWLKDGEAARAALKSESFELIILDLGLPKLSGLSLLQNIRHDGNSTPVIILTARESI 84 Query: 85 EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQ 144 ED+V+GL SGADDY+ KPF+ EL ARIRA+VRRS+G A S++ +++++ A +V V Sbjct: 85 EDRVKGLDSGADDYLIKPFDLNELSARIRALVRRSQGRADSVLQYKNITLDPAAHSVFVD 144 Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 +++ +E+ +++ L L++E + +Y ++ + ++V I LRKKL+ Sbjct: 145 DVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLN-- 202 Query: 205 AGGKNYIETVWGRGYVLREN 224 N+I T+ G GY+ +N Sbjct: 203 ---ANFIRTIRGVGYMAEKN 219 >gi|320107430|ref|YP_004183020.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925951|gb|ADV83026.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD+ +A+ ++ L + +V+V+ G+DG+EL + FD ++LD+ L GF Sbjct: 1 MKLLIIEDDRRIANLLQQGLSEDGHSVFVSHRGDDGLELIQSQYFDMVVLDIMLPGRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R A+ + P+ IL+ + D VRGL GADDY++KPF E L+AR+RA+ RR + Sbjct: 61 SILKQARHARYAMPILILTARDGMADIVRGLDLGADDYLTKPFQLEILLARVRAMGRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ K + I LT KE+ ++ELL R +++ + + Sbjct: 121 VPLLDQLRVGDLILDRSQKLLLRGDLEIPLTRKEFVLLELLMRRPQQVISRNELIEVGWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +D +I LR K+ N G + I TV +GY L Sbjct: 181 YDAEVSDNSVDFYIHSLRSKI-NVDGQPSMIRTVRAQGYAL 220 >gi|158334650|ref|YP_001515822.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304891|gb|ABW26508.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ LA +E+ L E + V V + G G+ + + D I+LD L G EV Sbjct: 5 ILLVEDETKLAQFVEMELTHEGYQVTVANDGIGGLTAARESQPDLILLDWMLPGFSGVEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV +L+ I D+V GL +GADDY+ KPF+ EEL+AR+RA +RR++ Sbjct: 65 CRRLRATGDKVPVILLTAKDEISDRVEGLDAGADDYMVKPFSIEELLARVRAHLRRTQEE 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ +L++N + + +G R I LT KE+ ++ L + LT++ L ++ Sbjct: 125 DPDVLEFSNLTLNQRTREI-FRGERSIELTAKEFDLLVYLMMHPRQVLTRDRILEQVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR KL K I+TV G GYV+RE Sbjct: 184 DFMGDSNIIEVYIRYLRLKLEENQ-EKRLIQTVRGVGYVMRE 224 >gi|160898512|ref|YP_001564094.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160364096|gb|ABX35709.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] gi|222834138|gb|EEE72615.1| predicted protein [Populus trichocarpa] Length = 238 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD +A + L L+ E V G+DG+ + +DA++LD+ L + G E Sbjct: 6 RVLLVEDDAHIADLLTLHLRDEGLEVMHCARGDDGLRQLERGGWDALVLDIMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMARYTPIIIISARSSEVQRILGLEIGADDYLAKPFSVLELVARVKALLRRVEA 125 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQ SL + G L+++ A+ + G R+ LT +E+ ++ + + ++ Sbjct: 126 LAQNARLESGSLTIAG-LAMDPVARDARLHGARLDLTPREFDLLYFFARQPGKVFSRMDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LN ++ + E ++ I +LR K+ I TVWGRGY E Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKFAE 233 >gi|322389666|ref|ZP_08063214.1| nisin biosynthesis regulatory protein NisR [Streptococcus parasanguinis ATCC 903] gi|321143665|gb|EFX39095.1| nisin biosynthesis regulatory protein NisR [Streptococcus parasanguinis ATCC 903] Length = 223 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 131/225 (58%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL I+DD+ + I L++ NF+V E+ I +C F FD I+LD+ + I G E Sbjct: 4 KILAIDDDEKILRLIANALRANNFHVETRKYIEE-INICDFTGFDLILLDV-MMPISGLE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R++R +I+TP+ L+ ED ++G+Q+GADDYI+KPF+ +E +ARI+ +RR Sbjct: 62 ICRSIR-PQIATPILFLTAKDFEEDLLKGIQAGADDYITKPFSIKEFIARIQMHLRREER 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 HA + +++ D++ V Q RI LT +E+ ++ LL+ +N + E N+LY Sbjct: 121 SNHASKEEIDSNITFYRDSQEVYYQSKRISLTKREFDLLYLLAKNENRIFSIEELYNYLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ I +I ++R+K + I+TVWG GY ++N Sbjct: 181 PVDSDAQLRSITEYIYQIRQKFK--IHQIDPIKTVWGGGYKWKKN 223 >gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 228 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 130/226 (57%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ ++ I++ LKS +N + G++ E Y D ++LD+ + I G + Sbjct: 7 KVLIVDDDENISEVIDMYLKSSGYNTKIALNGKEAQEFYLEYNPDIVLLDVMIPYIDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 +L+ +R K TPV +++ DKV L+ GADDYI KPF +EL+AR++A++RR S Sbjct: 67 ILKWIRKQK-ETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLRRYSS 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I DLS++ + V I + KE++++ L+ KN T+E L ++ Sbjct: 126 ENIKNEVIKLSDLSIDSTSYKVIYNEEEIKMPPKEFELLYYLANNKNKVFTREQLLCEVW 185 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G D P + + +DV I +LR+KLS +G + I+TVWG GY N Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLS--SGEQWEIQTVWGVGYKFEVN 228 >gi|225867072|ref|YP_002752450.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225789149|gb|ACO29366.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 225 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + +G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTQEGHFILKLHNENEGLNIAYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K TP+ I++ S ED V GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-KTPIIIVTSNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDY 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 NQQNETNFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYDVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 225 >gi|167760669|ref|ZP_02432796.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704] gi|167661556|gb|EDS05686.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704] Length = 235 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A IE+ L++EN NVY G + + + +FD ILD+ L DI G Sbjct: 4 KILVVDDEKEIADLIEVYLQNENLNVYKFYSGTEALAHMESVDFDLAILDIMLPDISGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + P+ +L+ DK+ GL GADDYI+KPF ELVAR++A +RR + Sbjct: 64 ICQIMREKGCACPIIMLTAKDEETDKITGLMLGADDYITKPFRPLELVARVKAQLRRYKK 123 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++++ L++N+ + G + LT E+ ++ +L RK + ++ E Sbjct: 124 YNTVSAAPATETILEYAGLTMNIKTYECLLNGESLSLTPTEFAILRVLLERKGSVVSAED 183 Query: 174 FLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ D I V I LR+K+ + G YI+T+WG GY Sbjct: 184 LFHEIWQDEYYNKSNNTITVHIRHLREKMKDTGGNPKYIKTIWGVGY 230 >gi|239918315|ref|YP_002957873.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281415488|ref|ZP_06247230.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839522|gb|ACS31319.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 239 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K LA + L+ + V +T G ++ + +E D ++LDLGL + G E Sbjct: 17 RVLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIE 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R A V +L+ ++ GL GADDYI+KPF+ ELVAR+ A++RR R Sbjct: 77 VCRRVR-AFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRT 135 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V GDL ++L A V G + LT E+ ++ LS R + ++ ++ + Sbjct: 136 TVSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIV 195 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D + +++DV I LR+KL A YI+TV G GY + E Sbjct: 196 WDPAWVGDERLVDVHIKNLRRKLD--ANPARYIDTVRGVGYRMAEQ 239 >gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] Length = 232 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60 ++L++ED++++ I + LK F V T+ G + + L + + D +LD+ + I GF Sbjct: 3 KVLILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTTPDIDIALLDVMVPGIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + L+ +DKV L GADD++SKPF+ EL+AR+++++RR Sbjct: 63 EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLRRVN 122 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A+ +G +++L +K + G + LT E+ +++ ++NT L++++ L+ Sbjct: 123 VQRAGAAKVSFQSGPFTLDLISKQFKKNGQPVELTPTEFSLVQFFLEKENTPLSRDVLLD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 H++ + KI+DV I +LR+K+ Y++TVWG GY Sbjct: 183 HVWGKEYMGDPKIVDVNIRRLRQKIEGNPSEPEYLQTVWGHGY 225 >gi|149277685|ref|ZP_01883825.1| two-component system response regulator [Pedobacter sp. BAL39] gi|149231373|gb|EDM36752.1| two-component system response regulator [Pedobacter sp. BAL39] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLG---EDGIELCKFYEFDAIILDLGLTDI 57 M++L++ED+K LA+ +E LK YV DL + G+E +D I+LDLGL D Sbjct: 1 MKVLIVEDEKTLAYEMEDFLKKA---FYVCDLAHTIKSGLEKIGVNSYDYILLDLGLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L A + IL+ ++ED++ GL GADDY++KPF+ EL +R++AI R Sbjct: 58 DGLSLLPAAKKHNPDAAYVILTARGNLEDRIAGLDLGADDYLAKPFSLLELQSRMQAIAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + L+ GD S++L + + +I L+ KE+ + L L +N LT+ H Sbjct: 118 RKFNIKEELLRLGDFSIDLQKRVIHCGTEQIELSRKEFDLFSYLLLHQNRVLTRMQLSEH 177 Query: 178 LYD--GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ D+ + ID I +RKKL N +++ETV G GY ++ Sbjct: 178 IWGTFADDDYDSNYIDAHIKNIRKKL-NVHAPTDFLETVRGVGYRIK 223 >gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 223 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 122/217 (56%), Gaps = 1/217 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD ALA I L+LK+E F+ G+ I + + D ++LD+ L G EV Sbjct: 1 MLVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIGIFRSTSPDLVLLDVMLPGKDGTEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A+ PV +L+ S D V+GL+SGADDYISKPF +ELVARIRA +RR+ Sbjct: 61 CRQIR-AESGVPVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARIRARLRRTDEP 119 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A + GDL +++ V G I LT E+ ++ L+ + ++E+ L ++ R Sbjct: 120 APERLSIGDLEIDVTGHRVTRAGAAISLTPLEFDLLVALARKPWQVFSREVLLEKVWGYR 179 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++++V + +LR K+ + + TV G GY Sbjct: 180 HAADTRLVNVHVQRLRSKIEHDPEVPEIVLTVRGVGY 216 >gi|229823027|ref|ZP_04449096.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271] gi|229787466|gb|EEP23580.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271] Length = 235 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 132/222 (59%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED++ L S+ +LK + ++V G++ ++ +D IILD+ + + GF Sbjct: 7 MKLLLVEDERDLNASLTKLLKKQQYSVDSAFDGQEALDFLAVGSYDLIILDIMMPHMDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L +R+ + PV +L+ ++ DK+RGL GADDY+ KPF EEL+AR+R ++RR Sbjct: 67 EFLERIRLQENPVPVLLLTARDAVTDKIRGLDLGADDYMVKPFEFEELLARLRVLLRRPL 126 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H S + G + + L K V G ++LT KEY+++E L +N L++E +H++ Sbjct: 127 RHILSDQVEIGPIRLILSQKRVLKDGQAVNLTAKEYEVLEYLVRNQNQVLSREQIRHHVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E E IDV I +R+KL ++ G + I+T G GYV+ Sbjct: 187 DYEQEAESNTIDVLIKNIRRKL-DSEGQPSLIQTKRGLGYVV 227 >gi|229590040|ref|YP_002872159.1| putative two-component response regulator transcriptional regulatory protein [Pseudomonas fluorescens SBW25] gi|229361906|emb|CAY48806.1| putative two-component response regulator transcriptional regulatory protein [Pseudomonas fluorescens SBW25] Length = 227 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L S +V D G +G+ ++D I LD L ++ G Sbjct: 3 RILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLVRAVSGDYDLITLDRMLPELDGLA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR +STP+ ++S +S ++++VRGL++G DDY++KPF +E+ AR+ ++RR Sbjct: 63 IVTTLRTIGVSTPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRKST 122 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + DL +NL ++ + L EY+++E L L++ M ++ Sbjct: 123 VKEFETALRVADLELNLISREASRADQPLSLLPTEYKLLEFLMRNTGQILSRMMIFEEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ + G I TV G GYV+ E Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DPPGLTPLIRTVRGSGYVIAE 225 >gi|218134085|ref|ZP_03462889.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC 43243] gi|217991460|gb|EEC57466.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC 43243] Length = 240 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 133/238 (55%), Gaps = 18/238 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ +A +EL L E + D G G+E + E D ++LD+ L ++ G EV Sbjct: 5 ILIVEDEEQIARFLELELMHEGYTTCKADNGRSGLETAQSGECDLVLLDVMLPELNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 LR LR + PV +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR +++S Sbjct: 65 LRRLRRTS-NLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRRALKKSSMA 123 Query: 121 ------GHA------QSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKN 166 G + +++ GD V LD K V V + + LT +E+ M++ L + Sbjct: 124 DGAGTDGRSADDVKEAAVLANGDGRVKLDKKQHIVTVDCNNVELTQREFAMLQTLLENMD 183 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L++E L+ + E I+DV++ LR K+ +A G K I+TV G GYV+R + Sbjct: 184 IVLSRETLLDKVCGYDYVGETNIVDVYVRYLRSKIDDAFGIK-LIQTVRGVGYVIRSH 240 >gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 227 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++DD A+ S+ L ++V + D G+ + + D +ILD+ + + G Sbjct: 1 MRVLVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINMRRPDVVILDVLMPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E R LR A PV +L+ ++ D+V GL +GADDY+ KPF EEL+AR+RA+VRRS Sbjct: 61 ETCRRLRAAGDDVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRRSA 120 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G +Q L + DL+++L + V I LT E+ ++E+ L + L Sbjct: 121 PGPGASQQLRFS-DLTLDLATREVWRGSRPIALTRTEFNLLEMFMRHPRQVLRRSQILEE 179 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ G D P ++V++ LR+KL A G I T+ G GY LRE Sbjct: 180 VW-GYDFPTTANSLEVYVGYLRRKL-EAQGEPRLIHTIRGVGYALRE 224 >gi|148652503|ref|YP_001279596.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571587|gb|ABQ93646.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 121/221 (54%), Gaps = 7/221 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RILLIEDD +A I L LKS V + +D + I L FDA++LDL L G Sbjct: 3 RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGM-FDAVLLDLTLPKGDGM 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R I TPV I++ +I ++V GL +GADDY+ KPF +E+VAR++A++RRS+ Sbjct: 62 TVLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQ 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G+++ + V QG + LT KE ++E + ++ + LY Sbjct: 122 GRCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLYG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E I+V I LRKKL N ++I T G GY L Sbjct: 182 WQQDIESNAIEVHIHHLRKKLGN-----DFILTKRGIGYYL 217 >gi|70733706|ref|YP_257346.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] gi|68348005|gb|AAY95611.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] Length = 226 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 129/230 (56%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ AH + L F V V G DG + E+D IILD+ L + G+ Sbjct: 1 MRLLVVEDEAKTAHFLAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + +TPV L+ +IED+VRGL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QLLQLVR-QRGATPVLFLTARDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL +++ + V G RI LT KE+ ++ LL+ R+ L++ + + +++ Sbjct: 120 LREAESFSIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWN 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + +++V + +LR K+ + K I TV G GY L A DE Sbjct: 180 LNFDSDTNMVEVAVRRLRAKVDDPYMPK-LIHTVRGVGYQL--EAPDEAL 226 >gi|325263000|ref|ZP_08129736.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp. D5] gi|324032094|gb|EGB93373.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp. D5] Length = 240 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 8/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + I L+S+++ G + D I++DLGL D+ G EV Sbjct: 9 ILVVEDDMPVKNLITTTLESQDYKYETAATGNQAVMAAASGNPDIILMDLGLPDMDGIEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 +R +R ++ PV ++S S DKV L +GADDY++KPF+ EEL+AR+R+ +R Sbjct: 69 IRKIRTWSVA-PVIVISARSDDRDKVEALDAGADDYLTKPFSVEELLARLRSTLRRIQYL 127 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R++ S+ GDL ++ A TV V IHL EY ++ LL+ LT + L+ Sbjct: 128 MRTKDQNSSVFKDGDLVIDYGAGTVFVGEKEIHLMPLEYSLLCLLAQNVGKVLTYQFILD 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAK 226 ++ E ++ + V++ LRKK+ YI+T G GY +LR + K Sbjct: 188 KVWVNAIESDMSSLRVYMASLRKKIEKDKSNPRYIQTHIGVGYRMLRVDEK 238 >gi|149926501|ref|ZP_01914762.1| two-component response regulator [Limnobacter sp. MED105] gi|149824864|gb|EDM84078.1| two-component response regulator [Limnobacter sp. MED105] Length = 231 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 132/231 (57%), Gaps = 8/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIEDD LA ++ L E F V + G DG+ L ++ IILD L DI G Sbjct: 1 MKLLLIEDDLRLADYLKKGLTEEGFVVDLARNGIDGLHLATQGLYEVIILDGMLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR +K S PV +L+ + +ED+V GL++GADDY+ KPF ELVAR+ A+ RR+ Sbjct: 61 AVLSALRQSK-SIPVLMLTARAMVEDRVSGLKAGADDYLVKPFAFAELVARLHALGRRTS 119 Query: 121 ---GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +Q+ ++T L + LDA +T + G + LT KE+ ++ LL RK +++ Sbjct: 120 TVAAESQTTVLTL-LDLELDAVRRTAKRGGKDLRLTAKEFSLLWLLLRRKGEVISRTEIA 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + E +IDV I +LR KL + + T+ G GYVL A+ Sbjct: 179 ELIWDMHFDSETNVIDVAIRRLRIKLDDPY-EIPLLHTIRGMGYVLEIRAQ 228 >gi|254820268|ref|ZP_05225269.1| hypothetical protein MintA_10086 [Mycobacterium intracellulare ATCC 13950] Length = 257 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 133/230 (57%), Gaps = 13/230 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDI 57 +R+LL++D+ AL + +++ L E +V D+ +G E + KF D ++LD+ L D+ Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEG---WVVDIAHNGREAMAKFERVNPDVLVLDIMLPDV 88 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L +R + + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++R Sbjct: 89 DGLRILERVRQSDVYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLR 148 Query: 118 RS----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 RS A++LIV GDL V+ ++ V + L+ E++++ L L++ Sbjct: 149 RSGQPPTPTAETLIV-GDLRVDTASREVTRGDTAVSLSSTEFELLRFLMRNPRRALSRTE 207 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ +++ I+D++I LRKK+ +G + I TV G GY+LR Sbjct: 208 ILDRVWNYDFAGRTSIVDLYISYLRKKID--SGREPMIHTVRGVGYMLRP 255 >gi|269128318|ref|YP_003301688.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313276|gb|ACY99650.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 223 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 119/217 (54%), Gaps = 3/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD +++ + L+ E + V V+ G +E D I+LDLGL ++ G EV Sbjct: 4 VLLAEDDTSISEPLARALRREGYTVEVSPDGPQALERALGGGVDLIVLDLGLPELDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++R RG Sbjct: 64 ARRVRSEGHGVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR--RGS 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ IV G + ++ +++ + + LT KE+ ++ +L +T+E + ++D Sbjct: 122 TETPIVQG-VRIDAESRRAWMGDQELQLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LR+KL + A YI TV G G+ Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDAANPRYITTVRGVGF 217 >gi|227541191|ref|ZP_03971240.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227183035|gb|EEI64007.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 248 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 22 RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 82 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 140 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR+ LT+ + Sbjct: 141 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRRGQALTRHDLVT 200 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 201 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 243 >gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis BI429] gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family [Thermosipho melanesiensis BI429] Length = 239 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++I+D + I L+ E ++V + E +E K + D ++D+ L I GFE Sbjct: 5 KIMVIDDQPEILELISFTLEKEGYDVIPVEDAEKALEELKDKDVDMFLVDIMLPGIDGFE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +R +R + TPV LS DKV GL+ GADDYI+KPF+ EL+ARI+A+ RR Sbjct: 65 FVRHIRSLEQHKLTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRRM 124 Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q+ IV DL +++D V+++G +++LT E+ ++ L+ + ++ + Sbjct: 125 QLSTQTKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRNV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K+E Sbjct: 185 LLDKLWGYDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKFRDPGKEE 239 >gi|119963093|ref|YP_948412.1| DNA-binding response regulator [Arthrobacter aurescens TC1] gi|119949952|gb|ABM08863.1| DNA-binding response regulator [Arthrobacter aurescens TC1] Length = 253 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 123/219 (56%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+++DD+ALA I ++L+++ F V+ D G+ +E+ + + D ++LDL L G Sbjct: 33 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQ-ALEVFRSSKPDLVLLDLMLPGSDGI 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ +L+ S D VRGL+SGADDY+ KPF ELVAR+RA +R Sbjct: 92 EVCRQIR-GESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGD 150 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + D+++++ V G RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 151 QKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG 210 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 211 YRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGY 249 >gi|57234026|ref|YP_181946.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224474|gb|AAW39531.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 222 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 114/222 (51%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++DDK L ++E L V G G EFD +ILD+GL D G Sbjct: 1 MRILLLDDDKCLCQTLERALGEAGHVVEYACDGASGEYFAANSEFDLLILDIGLPDKNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR I T V +L+ S++ KV+GL +GADDY+ KPF +EL ARIRA+ RR Sbjct: 61 EVCRKLRADGIVTSVLMLTARDSLDSKVKGLDAGADDYLCKPFACDELFARIRALQRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ T +S + + V I LT EY+++E +T+ M HL+ Sbjct: 121 LRVLPVVETAGISFDNVSHRVCGGKTEIKLTAAEYKILEYFITNPGVLITRSMLEEHLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVL 221 ID I KLR+KL +A G I+T+ G GY L Sbjct: 181 AESTSVSNTIDSLIKKLRQKLGWDAKSGP--IKTLRGAGYRL 220 >gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567] gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931] gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567] gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931] Length = 228 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++AL + +L E F V D G D + + + D ++LD+ L + G E Sbjct: 3 KILLVEDEEALYDPLSFLLGREGFTPVVVDNGLDAVPAFEREDPDLVLLDVMLPGMSGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 V + +R A S P+ +L+ S DKV GL+ GADDY++KP++ EL+ARIRA++RR S Sbjct: 63 VCKKIR-ASSSVPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVLRRQSP 121 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H Q + G + ++++ V V G + + KE++++E+L +T+ + Sbjct: 122 DHGDEQDQKALAAGPVRMDVERHVVTVDGEEVSMPLKEFELLEILLRNTGRVMTRAQLIE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV I +LR K+ A Y+ TV G GY Sbjct: 182 RVWGADYVGDTKTLDVHIKRLRSKIEPKASSPRYVITVRGLGY 224 >gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368] Length = 235 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G E Sbjct: 4 QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR++G Sbjct: 64 VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + G L V + V + LT KE++++ L N TLT+E Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234 >gi|167768929|ref|ZP_02440982.1| hypothetical protein ANACOL_00246 [Anaerotruncus colihominis DSM 17241] gi|167668569|gb|EDS12699.1| hypothetical protein ANACOL_00246 [Anaerotruncus colihominis DSM 17241] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA ++ +++ + + V G DG++ ++D ++LD+ L + GF Sbjct: 1 MRVLIVEDERRLADALCQIMREQKYGVDAVYDGRDGLDYAMSGQYDVVVLDVMLPERSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+RALR + PV +L+ I DKV GL GADDY++KPF+ EEL+AR+RA+ RR Sbjct: 61 EVVRALRAQNNAVPVLLLTARDEISDKVTGLDCGADDYMTKPFSPEELLARVRALSRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL +NL +T+ + L KE++++ +L KE + ++ Sbjct: 121 EVQHEELRYADLCLNLSTRTLSRGEKSVSLGYKEFEVLHILLSNPRAITPKEELITRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++ +I LRKK G + I V GY L Sbjct: 181 ADSDAEDNNVEAYISFLRKKFFY-LGSQTAISAVRKVGYRL 220 >gi|303247363|ref|ZP_07333636.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] gi|302491277|gb|EFL51166.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] Length = 225 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD A + LK + + V G +G+ L +D +I+D L + G Sbjct: 1 MKILLIEDDAETAAYVAKGLKEQGYVVDHAAEGREGLFLAAEGPYDVMIVDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R A TP+ L+ SSIED+V GL++G DDY+ KPF EL+AR++A+ RR Sbjct: 61 AIVKTIRGAGTKTPILFLTTRSSIEDRVEGLEAGGDDYLVKPFAFSELLARVQALARRPP 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + DL ++L +T GH + L E++++E L +T+ M L ++ Sbjct: 121 LADVTTQLRIADLELDLLTRTASRAGHSLDLKPLEFKLLEYLVRNAGRIVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P+ +++ I +LR K+ G + I TV G GY+L Sbjct: 181 DFHFDPQTNVVETNISRLRAKVDRGFGC-DLIHTVRGAGYML 221 >gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC 19977] gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus] Length = 249 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 11/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ LA + LK E+F V++ G ++L + + D +ILD+GL + G E Sbjct: 17 RALVVDDEVPLAEVVASYLKRESFEVHLAHDGRRALDLAREVDPDVVILDIGLPGVDGIE 76 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LRV + V +L+ + D + GL GADDY++KPF+ E+VAR+RA++RR R Sbjct: 77 VCRQLRVFSDAY-VVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRRPRR 135 Query: 122 HAQSLI----------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +S V G L +N+D + V V + LT E+ ++ LS R L++ Sbjct: 136 APESPAAVTPELSPPRVFGALRINVDGREVHVGERPVTLTRTEFDVLAALSSRPGIVLSR 195 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L+ ++ I+DV + LR+KL ++ Y+ TV G GY Sbjct: 196 KQLLDTVWGDTWVGNDNIVDVHVGHLRQKLGDSPSQPRYVMTVRGVGY 243 >gi|163854970|ref|YP_001629268.1| two component response regulator [Bordetella petrii DSM 12804] gi|163258698|emb|CAP40997.1| two component response regulator [Bordetella petrii] Length = 228 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ +A + L F L E+DAI++DL L D G Sbjct: 1 MRILLVEDELEMASWLVRALAQSGFTPDHAPDARSAEALMAANEYDAIVMDLRLPDKHGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R TPV +L+ +++D+VRGL GADD+++KPF EEL AR+ A+VRRSR Sbjct: 61 VVLRDMRGRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARVAALVRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G L+ + +++ + G+ + LT +E+ + L R + K ++ Sbjct: 121 GRQFPRLQCGSLAYDGESRAFTLDGNLLFLTPREHAALVALLTRSGYPVDKAQLFGKVFT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 E + I+V + +LRKKL AG I TV G GY+L +A + Sbjct: 181 QDSEANLDAIEVVLHRLRKKL---AGSDVRIVTVRGLGYMLESSASEPA 226 >gi|124266822|ref|YP_001020826.1| two-component response regulator [Methylibium petroleiphilum PM1] gi|124259597|gb|ABM94591.1| two-component response regulator [Methylibium petroleiphilum PM1] Length = 228 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ LA + L + V V G DG+ L +D ++LD L I G Sbjct: 1 MKLLVVEDEVKLAEYLRKGLTESGYVVDVAHDGIDGLHLAMEGNYDLLVLDSMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +L ALR +K TPV +L+ ++D+VRGLQ GADDY++KPF EL ARI+ ++RR+ Sbjct: 61 ALLAALRRSK-HTPVLMLTARVHVDDRVRGLQGGADDYLTKPFAFTELTARIQVLLRRAA 119 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +L+ DL V+L + G R+ LT KE+ ++ LL R+ L++ Sbjct: 120 PSQSASEPTLLRIADLEVDLLRRKAVRAGQRLDLTAKEFSLLALLMRRQGEVLSRTELAA 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D + E +++V I +LR K +A + + TV G GYVL E Sbjct: 180 QVWDMNYDSETNVVEVAIRRLRNKF-DAPFEQVLLHTVRGMGYVLEE 225 >gi|156934385|ref|YP_001438301.1| DNA-binding transcriptional regulator PhoP [Cronobacter sakazakii ATCC BAA-894] gi|156532639|gb|ABU77465.1| hypothetical protein ESA_02216 [Cronobacter sakazakii ATCC BAA-894] Length = 223 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLSELGHQV---DAAEDAKEADYYLNEHLPDVAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++IS PV +L+ +DKV L +GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGLSLIRRWRASEISLPVLVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVVARMQALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + V + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVISMPPFVVDLSRREVTINDNLIRLTAFEYTIMETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ G+ I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQAEYPGEA-ITTVRGQGY 218 >gi|38232699|ref|NP_938466.1| putative two-component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38198957|emb|CAE48572.1| Putative two-component system response regulator [Corynebacterium diphtheriae] Length = 240 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 74 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V+ + LT E++++ L+LR LT+ + Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVRVEETIVELTRTEFELLVALALRPGQALTRHDLVT 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235 >gi|329922499|ref|ZP_08278103.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|328942137|gb|EGG38417.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 235 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 134/229 (58%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ A+ IEL+L+ EN+ V + G+ ++L + D ++LDL L D G++ Sbjct: 3 KILVIDDEAAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + + K + PV +LS + + DKV GL+ GA+DY++KPF+ EL+ARI+ I+RR+ Sbjct: 63 LCKEI-TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +S I+ +L+ +L+++ V G + LT KE++++E L R + T++ Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILETLLKRPDKIFTRD 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + + + +D+ I +LRKKL + A Y+ T++G GY L Sbjct: 182 ELLQIGWGYDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230 >gi|229109465|ref|ZP_04239057.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228673962|gb|EEL29214.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] Length = 232 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 128/227 (56%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+G+++ D +LD+ L I G E Sbjct: 6 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEGLQILSEQTVDIALLDVMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 66 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESMR 232 >gi|254392878|ref|ZP_05008047.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706534|gb|EDY52346.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 229 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 224 >gi|329894345|ref|ZP_08270215.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [gamma proteobacterium IMCC3088] gi|328923141|gb|EGG30464.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [gamma proteobacterium IMCC3088] Length = 230 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 123/224 (54%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSI--ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 MR+LLIEDD ++A + EL LK N T G +G+ +DA+I+D L + Sbjct: 5 MRVLLIEDDSSVADFVASELALKGHNCECAST--GTEGLLAANSARWDALIVDRMLPKLD 62 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G V+++LR TPV ILS + ++D+V+GLQ GADDY+ KPF+ EEL+AR+ AI RR Sbjct: 63 GLSVIKSLRDKGDLTPVLILSALGEVDDRVKGLQIGADDYLVKPFSSEELMARLEAIHRR 122 Query: 119 SRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 T DL ++L + V G I L +EY+++E L +T+ M L Sbjct: 123 LAPLGADFRTTLEAEDLRLDLITQEVRRAGRVIALQPREYRLLEYLMRNAGKIVTRSMLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ +P+ +IDV I +LR+K+ + TV G GY Sbjct: 183 ENVWGYHFDPQTNVIDVHISRLRQKIDRDF-DYPLVHTVRGAGY 225 >gi|256786504|ref|ZP_05524935.1| two component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 125/220 (56%), Gaps = 5/220 (2%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 ++D++++ + + L+ E + + G ++ + + DA++LD+ L D+ G VL Sbjct: 1 MDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLSVLGR 60 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG---H 122 LR PV L+ ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS Sbjct: 61 LRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRR 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + S++V GDL+++ D+ V G IHLT E++++ L L+K L+ ++ Sbjct: 121 SDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRVWSYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++++I LR+K+ AG + I T G GY+++ Sbjct: 181 FGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 218 >gi|253680891|ref|ZP_04861694.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] gi|253562740|gb|EES92186.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] Length = 231 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 130/225 (57%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+ +++ I+L+L+ ++F V GEDGI+ +ILD+ L I GF+ Sbjct: 6 KVLVIEDELSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPGIDGFK 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V LR + +L+ + DK++GL+ GADDY+ KPFN EL AR+ +++RR Sbjct: 66 VCEILRKNHPKVGIIMLTALGQDVDKIKGLEYGADDYMIKPFNPLELAARVTSLIRRMSF 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S ++ ++++ V+L++K +++LT KE+ ++++ +L+++ L+ Sbjct: 126 SNDNSSRILISEPFKVDLNSKIAYKNEEKLNLTPKEFLLLKIFIENIGISLSRDKLLDLA 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + KI+DV I +LR KL + Y++TVWG GY+ +E Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGTGYIWKE 230 >gi|192361000|ref|YP_001982278.1| abfR arabinofuranosidase two component system response regulator [Cellvibrio japonicus Ueda107] gi|190687165|gb|ACE84843.1| abfR arabinofuranosidase two component system response regulator [Cellvibrio japonicus Ueda107] Length = 232 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 126/229 (55%), Gaps = 6/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLI+DDK L + L +E F V + G+ +EL + + I+LD+ L GF Sbjct: 2 LKILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +VL+ LR TPV +L+ D+V GL+ GADDY++KP + ELVARIRAI+RR S Sbjct: 62 DVLKILR-QHSQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRAS 120 Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A + +G LS++L +T + LTG E+ ++E+L R ++K+ Sbjct: 121 IAEANQPNVERLTSGKLSLHLGTRTATWDNQDVVLTGTEFSVLEILVRRAGQVISKDDMT 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + P + IDV + +RKK++ A K+ I V G GY+L N Sbjct: 181 EQALNRKLTPYDRSIDVHVSNIRKKIALAGSTKDLIINVRGAGYMLTLN 229 >gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 229 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 118/218 (54%), Gaps = 1/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ LA + L+SE + V + G +EL + IILDL L + G EV Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR + TP+ +L+ DKV GL+ GADDY+SKPFN +EL+ARI A++RR+ Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 S V+ GDL ++ +V ++ L+ +E+Q++E L T+ +E ++ Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ID I +LR KL + YI TV G GY Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGY 222 >gi|117928403|ref|YP_872954.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648866|gb|ABK52968.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 240 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 122/220 (55%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ ++ + L + + VY G ++L ++ D +ILDLGL D+ G +V Sbjct: 4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R + P+ +LS KV+ L +GADDY++KPF +EL+AR+RA +RR+R Sbjct: 64 IGGVR-GWSTMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ I+T D +++L KTV I LT E+ ++++L+ +T L+ ++ Sbjct: 123 SAEPRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDVWGP 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + V++ +LR+KL Y+ T G GY L Sbjct: 183 TYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRL 222 >gi|307132852|ref|YP_003884868.1| Response regulator of the two-component transcriptional regulatory system (PmrA-PmrB BasR-BasS) [Dickeya dadantii 3937] gi|306530381|gb|ADN00312.1| Response regulator of the two-component transcriptional regulatory system (PmrA-PmrB BasR-BasS) [Dickeya dadantii 3937] Length = 222 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + +++E + ++ L + ++LDLGL D G Sbjct: 1 MKLLIVEDDTLLQEGLLQAMRNEGYVCDCASTAKEADALITSAHYSLVVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + PV IL+ +++D+V GL GADDY+ KPF E AR+RA++RR + Sbjct: 61 TLLNRWRRNRYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I +++++L+ + V + I LT KE+ ++ L L+ + + +E+ LY Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+P ++V I LR+K+ GKN I+T+ G GY+L Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI-----GKNRIKTLRGFGYLL 216 >gi|119510916|ref|ZP_01630039.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119464444|gb|EAW45358.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 230 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 119/229 (51%), Gaps = 14/229 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-----KFYEFDAIILDLGLT 55 MR+LL+ED+ L +I+ L + Y+ D DG E + E+ I D L Sbjct: 1 MRVLLVEDEPDLGAAIKRTLTQQK---YLVDWVIDGDEAWGYLEDSWTEYTLAIFDWMLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 I G E+ + LR + S P+ +L+ S+EDKV GL +GADDY+ KPF EL+AR+RA+ Sbjct: 58 KISGLELCKRLRKHQNSLPILMLTAKDSMEDKVTGLDAGADDYLVKPFGMAELLARLRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQG-----HRIHLTGKEYQMIELLSLRKNTTLT 170 RRS + G+L+++ V Q I LT KE+Q++E N LT Sbjct: 118 QRRSPQFQPQKLTVGNLTLDYGNNVVSSQDAVGNVQEITLTYKEFQLLEYFMKHPNQILT 177 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E N L++ EP ++ + LR+KL N G +N IET+ G GY Sbjct: 178 TEQIRNQLWEVNAEPVSNVVAAQMRLLRRKLVN-GGCENMIETLHGLGY 225 >gi|325676168|ref|ZP_08155849.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325553078|gb|EGD22759.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 244 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 118/214 (55%), Gaps = 6/214 (2%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G + + DA++LD+ + + G V+ ALR A P Sbjct: 30 SLERGLRLSGFTVLTASDGAVALRVVADAAPDAVVLDMNMPVLDGTGVVTALRRAGNEVP 89 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-----SRGHAQSLIVT 129 +C+LS SS++D++ GL+SGADDY+ KPF ELVARIRA++RR + IV Sbjct: 90 ICVLSARSSVDDRIAGLESGADDYLVKPFVLAELVARIRAMLRRRSVAVAATDTDPPIVV 149 Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189 G LSV+L + V + I LT +E+++ E+L+ L++E L+ ++ + + Sbjct: 150 GPLSVDLAGRRVWLGDTEIALTKREFELTEVLARNAGVVLSRERLLDLVWGYDFVADTNV 209 Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +DVF+ LR+K G + TV G G+VLRE Sbjct: 210 VDVFVGYLRRKF-EIDGTPRLVHTVRGVGFVLRE 242 >gi|229494312|ref|ZP_04388075.1| transcriptional activator protein CopR [Rhodococcus erythropolis SK121] gi|229318674|gb|EEN84532.1| transcriptional activator protein CopR [Rhodococcus erythropolis SK121] Length = 225 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED+ LA +I L +E F V G+DG EFD I+LD+ L G+ Sbjct: 2 VRVLVVEDEVRLAETIRRGLVAEGFVTAVELNGDDGFATACSDEFDVIVLDIMLPGKHGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR +I TP+ +LS D GADDY+ KPF+ L+AR+RA+VRR Sbjct: 62 DIVRDLRAREIWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVLLARLRALVRRGA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDLS++ V G + LT +EY ++E L +TK + ++D Sbjct: 122 PQRPAILSVGDLSLDPAKHQVSRAGIELTLTPREYSVLEFLMRNNGVVVTKTEIVRSVWD 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + I++V+I LRKKL G ++ IETV G GY Sbjct: 182 TNYEGDENIVEVYIGYLRKKLDLPFGTQS-IETVRGVGY 219 >gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 256 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ ++ I++ LK + F+V D G+ +E+ + Y DA ILD+ + + GF Sbjct: 30 VKVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGF 89 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +L LR A P L+ +ED++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 90 TLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVA 149 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SLI D++++ D V G + L+ E+Q++ L + L+K L+H Sbjct: 150 KDDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDH 209 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + +++ ++ LR+K+ I TV G GYVLR+ Sbjct: 210 VWNYDFGGDGNVVESYVSYLRRKIDTKE--PRLIHTVRGVGYVLRK 253 >gi|84515126|ref|ZP_01002489.1| two-component response regulator [Loktanella vestfoldensis SKA53] gi|84511285|gb|EAQ07739.1| two-component response regulator [Loktanella vestfoldensis SKA53] Length = 216 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 11/221 (4%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDIPGFE 61 ++ED+ LA I +L +E Y D+ +DGI L +D I+LD+GL G + Sbjct: 1 MVEDEPVLAQQINTVLVTEG---YAVDIADDGIAAEALGVSQPYDTIVLDMGLPGRDGMQ 57 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ R A + PV ILS ++V GL +GADDY++KPF+ EL AR+RA++RR Sbjct: 58 VLKNWRAAGMRAPVLILSARDGWTERVDGLDAGADDYLTKPFHMPELSARLRAMIRRKSE 117 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + D+ + V V G I LT +E ++ L +++ H+Y Sbjct: 118 QASPVFERDDVVFDSRINQVMVAGQGISLTAQELAVLSYLFHHAGRLVSRTELSQHIYHH 177 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E I VFI +LR KL G + I+TV GRGY+++ Sbjct: 178 DGERESNTIVVFINRLRNKL-----GDSLIDTVRGRGYMIK 213 >gi|315283525|ref|ZP_07871693.1| regulatory protein VanR [Listeria marthii FSL S4-120] gi|313612832|gb|EFR86806.1| regulatory protein VanR [Listeria marthii FSL S4-120] Length = 233 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD ++L L++E + +Y G + L + + +ILD+ + ++ G EV Sbjct: 7 ILIADDDXXXXDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++AI+RR + Sbjct: 67 CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 126 Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ G + V+ V V G +HLT E+ ++ LL+ + E Sbjct: 127 SQVEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTXEFDILFLLASEPGRVFSSEYIFE 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL A GG+N I+T+WG GY Sbjct: 187 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 229 >gi|239502107|ref|ZP_04661417.1| transcriptional activator protein CusR [Acinetobacter baumannii AB900] gi|260549020|ref|ZP_05823241.1| heavy metal response regulator [Acinetobacter sp. RUH2624] gi|294648943|ref|ZP_06726393.1| two component response regulator [Acinetobacter haemolyticus ATCC 19194] gi|193078364|gb|ABO13342.2| Heavy metal response regulator [Acinetobacter baumannii ATCC 17978] gi|260407748|gb|EEX01220.1| heavy metal response regulator [Acinetobacter sp. RUH2624] gi|292825159|gb|EFF83912.1| two component response regulator [Acinetobacter haemolyticus ATCC 19194] Length = 227 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILL+ED++ ++ L Y+TD DG+ E+D IILD+ L + Sbjct: 1 MRILLVEDEQKTGDYLKQGLSEAG---YITDWVTDGLTGKHQALSEEYDLIILDVMLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ ++ +R + S P+ LS I+D+V+GL+ GADDY+ KPF EL+ARI++++R Sbjct: 58 DGWNIINDIRKSGKSMPILFLSARDQIDDRVKGLELGADDYLVKPFAFAELLARIKSLLR 117 Query: 118 RSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + S LI DL ++L + V G RI LT KE+ ++EL R+ L + + + Sbjct: 118 RGQQKEDSNLITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIAS 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +++V I +LR K+ + K I+ + G GYVL Sbjct: 178 QIWDMNFDSDTNVVEVAIKRLRNKIDSNFTPK-LIQNIRGMGYVL 221 >gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2] gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIEDD ++A L+ F V + GE+G++ +D IILD+ L + GFE Sbjct: 3 KILLIEDDISIAELQRDYLEINKFRVDIQHSGEEGLQKALQEHYDLIILDIMLPGVNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K + P+ +S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAVK-NIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ V G ++++ A+ V + G T KE+ ++ L + N L+KE Sbjct: 122 LAGKQTQTNTIFVHG-ITIDKSARKVYIDGEETPFTTKEFDLLVFLLMHPNQVLSKEQLY 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +V + V I K+R K+ ++ETVWG GY Sbjct: 181 EKIWGLESAADVSTVTVHIRKIRGKIEGDPAQPKFLETVWGAGY 224 >gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 245 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 10/236 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ +++ L E + V G D + + + Y D I+LD+ + + G Sbjct: 10 RILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 70 AARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ DL ++L + V R+ LT E+ ++E+ LT+E Sbjct: 130 AASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTRE 189 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ EP +DV++ LR+K + A G + TV G GY LR E Sbjct: 190 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRTGGSGE 244 >gi|160938478|ref|ZP_02085833.1| hypothetical protein CLOBOL_03376 [Clostridium bolteae ATCC BAA-613] gi|158438851|gb|EDP16608.1| hypothetical protein CLOBOL_03376 [Clostridium bolteae ATCC BAA-613] Length = 232 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDDKA+ + I L+ +++ D GE GI D I+LDLGL D+ G +V Sbjct: 6 ILIIEDDKAVKNLIATTLEMHDYHYIWADKGEQGILSAASQRPDIILLDLGLPDMDGVDV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + +TP+ ++S S DK+ L +GADDY++KPF+ +EL+AR+R+ RR Sbjct: 66 ILKIR-SWTNTPIIVISARSEDSDKIAALDAGADDYLTKPFSVDELLARLRSTQRRLSYM 124 Query: 119 -SRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S Q SL G L+++ A + G +HLT EY+++ LL+ LT Sbjct: 125 QSLEEVQTSLFANGGLTIDYAAGCACLDGEELHLTPYEYKLLCLLAHNVGKVLTHSYITR 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +V + VF+ LRKK+ YI+T G GY Sbjct: 185 EIWGAAWEGDVASLRVFMASLRKKIEKNPSQPQYIQTHVGVGY 227 >gi|29833315|ref|NP_827949.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610437|dbj|BAC74484.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 262 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++DD LA + L+ E + V G ++ + DA++LD+ L D GF Sbjct: 34 VRVLVVDDDPDLAEVLSGALRYEGWEVRAAGDGARAVDEARDLLPDAVVLDVMLPDTDGF 93 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + V L+ ++ED++ G+ +G DDY++KPF+ EE+VAR+R ++RR+ Sbjct: 94 AVLRELRTVRPDVCVLFLTARDAVEDRIAGITAGGDDYVTKPFSLEEVVARLRGLLRRA- 152 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A+ L ++ GDL ++ +A+ V G I L+ E++++ L L+K L Sbjct: 153 GMARQLDEGPRLIVGDLVMDEEAREVTRGGELIELSPTEFELLRFLLRNPRRVLSKAQIL 212 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ + +++++I LRKK+ AG + I TV G GYV++ A Sbjct: 213 DRVWSYDFGGQAHVVELYISYLRKKVD--AGREPMIHTVRGAGYVIKPVA 260 >gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp. HTCC2649] gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp. HTCC2649] Length = 237 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + + L+ F V G + ++L + D +LD+ L D+ GF V Sbjct: 12 LLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHHPDLCVLDVMLPDMDGFAV 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R LR + P+ ++ S++DK+ GL G DDY++KPF+ EE+VARIRA++RR+RG Sbjct: 72 TRKLRESGRRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTRGD 131 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + DL ++ D+ V G I + E++++ L L N L+K L+H+++ Sbjct: 132 IDGNSALRFEDLELDEDSHEVRRAGRVIETSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 191 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E I++ +I LR+K+ + G I T G GYVLR Sbjct: 192 YDFRGESGIVESYISYLRRKI-DTEGLPPLIHTKRGVGYVLR 232 >gi|325293887|ref|YP_004279751.1| two component response regulator [Agrobacterium sp. H13-3] gi|325061740|gb|ADY65431.1| two component response regulator [Agrobacterium sp. H13-3] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+ED+ +A ++ E + + + +V + D L + +D ++LD L D G Sbjct: 1 MRILLLEDEPEMARALLEALRRRDVLADHVRTIA-DADALARDGSYDVLVLDRRLPDGEG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ +LR A+ S P+ +L+ + S++ +V GL +GADDY++KPF EEL+AR+RA+ RR Sbjct: 60 LNLVSSLRKARHSVPILVLTALGSVDHRVDGLDAGADDYLAKPFAIEELLARLRALHRRG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G+LS++ + V V G I +EY +E L R N +T+ + +Y Sbjct: 120 PSLSSQYVSFGNLSIDPKSNEVTVAGAIIEFRRREYLALEALMRRPNRIVTRSNLVEAVY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + DE E +D I ++RKKL+ A I V GY++R N Sbjct: 180 NLDDEIESNALDAHISRIRKKLAQAEATVE-IRAVRNIGYLIRAN 223 >gi|257064017|ref|YP_003143689.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256791670|gb|ACV22340.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 228 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD LA +++ +L+ + V + G+ G + +D +ILD+ L + GF Sbjct: 1 MQVLIVEDDVRLASALKHILEDNGYLVDMVHNGQSGYDYAVAGIYDVVILDVMLPKMNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ +LR A + TPV +L+ +I DK+ GL SGADDY++KPF+ EL+A +RA+ RR Sbjct: 61 EVVASLRRANLDTPVLLLTARDAIPDKITGLDSGADDYMTKPFSPAELLAHLRALTRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDLS+NL++ + I+L+ KEY++ +L ++KE ++ ++ Sbjct: 121 QVVFEKLEAGDLSLNLESHDLSSGQKTINLSFKEYEIANILMSNAGQIISKEQLISKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ +I LRKKL G I+TV GY L Sbjct: 181 VESTADDNNVEAYISFLRKKL-KFLGSSVSIDTVRRVGYKL 220 >gi|215429436|ref|ZP_03427355.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis EAS054] gi|289752642|ref|ZP_06512020.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis EAS054] gi|289693229|gb|EFD60658.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis EAS054] Length = 253 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED+ + + L E V G + ++DA++LD+ L I GF Sbjct: 23 VRILVVEDEPKMTVLLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ G +ET+ G GY LR++ Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPF-GVTSLETIRGAGYRLRKDG 246 >gi|167751410|ref|ZP_02423537.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702] gi|167655656|gb|EDR99785.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702] Length = 222 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 123/217 (56%), Gaps = 3/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA + L++EN+ V V GE + L + Y I+LD+ L I GF V Sbjct: 4 ILIVEDNEELADILCDFLRAENYTVSVAKTGEKALSLYEKYGARLIVLDIMLPGIDGFAV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + TP+ I+S EDK+ GL GADDYI KP++ + ++A+I I +R + Sbjct: 64 CRKIR-EESDTPILIVSAKVDKEDKLNGLILGADDYIEKPYDIDIMLAKIAGIFKRR--Y 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A ++ GD+ VN ++TV I +T KE++++ LL K LTKE N ++ Sbjct: 121 AVDELIDGDIRVNKVSRTVCRNDIPIEMTVKEFELLVLLIENKGRILTKEYLFNQIWGSD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + + V I +LR+K+ + +I+TVWG GY Sbjct: 181 SFSEQQTLTVHIKRLRQKIEDDPKNPKHIQTVWGVGY 217 >gi|111017096|ref|YP_700068.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110816626|gb|ABG91910.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 225 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ LA ++ L +E F V V G G E +FD ++LD+ L G+ Sbjct: 1 MRVLLVEDERRLAETVRRGLTAEGFVVDVEHDGLSGFEAALSGDFDVVVLDIMLPGKHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR ++ TPV +LS D GADDY+ KPF+ LVAR+RA+VRR Sbjct: 61 DIVRDLRRREVWTPVLMLSAKDGEYDLADAFDLGADDYLIKPFSFVVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ L ++ V G + LT +EY ++E L + +TK+ L ++D Sbjct: 121 PRRPTVLTADGLELDPARHRVTRDGTALALTPREYSVLEFLMRNAGSAVTKQEILQSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + I++V+I LR+K+ + G+N I+TV G GY L+ Sbjct: 181 THYEGDDNIVEVYIGYLRRKV-DTPFGRNSIDTVRGVGYRLKSG 223 >gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] Length = 235 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ ++A + L F + + G+ G EL + I+LDL L + G E Sbjct: 4 KILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEKPSLIVLDLMLPSMDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V ++LR K++TP+ +L+ DKV GL+ GADDY++KPF+ E+VARI+A++RR+ Sbjct: 64 VCKSLRQQKVNTPIIMLTAKGDEFDKVLGLELGADDYMTKPFSPREVVARIKAVLRRASN 123 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + A I G L V D V + ++ T KE++++ L KN LT++ L Sbjct: 124 VPTPQQDASQPISLGKLDVYPDRFEVFLNKEQLEFTPKEFELLVYLMENKNRVLTRDQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + +I+DV I LR+K+ + +I+T+ G GY E Sbjct: 184 SAVWKYDFAGDTRIVDVHISHLREKIEENSRKPAFIKTIRGLGYKFEE 231 >gi|304438293|ref|ZP_07398234.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368659|gb|EFM22343.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 228 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +A +++ L+ E F + G E FD I+LD+ L + G E+ Sbjct: 7 VLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPGMDGIEI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R + P+ +L+ ++ED+V GL GADDYI+KPF EL+ARIR +RR S Sbjct: 67 CRRVRTVS-NVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARIRNALRRRDIS 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + +L + L V+V G + LT +EY ++E L K T LT++ L ++ Sbjct: 126 TDDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++DV+I LR KL + K YI TV G GYV+R+ Sbjct: 186 GFDYTGETNVVDVYIRYLRAKLDDRF-HKKYIYTVRGVGYVVRD 228 >gi|296332216|ref|ZP_06874679.1| two-component response regulator (YcbM) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296150708|gb|EFG91594.1| two-component response regulator (YcbM) [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 230 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +++ ++ L E F + GE+GI L K +D I+LD+ L + G + Sbjct: 3 RILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R K + PV ++S DK GL GADDYI+KPF+ EL AR++A +RR+ Sbjct: 63 FLKIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ +I L++++D +V G + LT E+Q++ L + TKE Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 182 RSVWNEEYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229 >gi|283835613|ref|ZP_06355354.1| DNA-binding response regulator TctD [Citrobacter youngae ATCC 29220] gi|291068825|gb|EFE06934.1| DNA-binding response regulator TctD [Citrobacter youngae ATCC 29220] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L F V G L + +LD+ + + G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR + PV +L+ S++ D+V+GL GADDY++KPF EEL AR+RA++RRS Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEELDARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G+L+ + D +QG + LT +E ++ +L R+ ++++ ++ Sbjct: 121 GQVQGIQQLGELAFH-DEGYFLLQGQPLALTPREQALLTVLMYRRLRPVSRQQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + I+++I +LRKKL G I T+ G GYVL Sbjct: 180 LSDEVSPESIELYIHRLRKKLQ---GSDVRIATLRGLGYVL 217 >gi|326441388|ref|ZP_08216122.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220 >gi|332160832|ref|YP_004297409.1| transcriptional activator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665062|gb|ADZ41706.1| transcriptional activator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862712|emb|CBX72855.1| transcriptional activator protein czcR [Yersinia enterocolitica W22703] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 129/218 (59%), Gaps = 4/218 (1%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 +ED++ + + L F+V ++ G +G+ Y++DAIILD+ L + G+ VL Sbjct: 1 MEDEEKTSSYLSRALGESGFSVDISANGAEGLHYALEYDYDAIILDVMLPGMDGYRVLEG 60 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SRGHA 123 +R +K TPV +LS S++++V+GL+ ADDY+ KPF+ ELVARI+A+VRR + G Sbjct: 61 IRASK-QTPVLMLSARGSVDERVKGLRLDADDYLPKPFSLIELVARIQALVRRRSTDGAD 119 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 + + DL ++L A+ V G R+ LT KE+ ++ LL+ + L+K M ++D Sbjct: 120 ITQLQIHDLHLDLLARRVFRTGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQVWDMNF 179 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ +A + TV G GYVL Sbjct: 180 DSDANVVEVAIKRLRDKI-DAPFEVKLLHTVRGMGYVL 216 >gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] Length = 235 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D++ + ++ L E F+ + G + L + FD I+LD+ L + G E Sbjct: 4 QVLLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR++G Sbjct: 64 VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + G L V + V + LT KE++++ L N TLT+E Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234 >gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 231 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 130/234 (55%), Gaps = 13/234 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE----LCKFYEFDAIILDLGLTD 56 M+IL+++DD+A+ S+ +S +++ Y + EDG+E L DA+++D+ + Sbjct: 3 MQILVVDDDQAVRDSLA---RSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVMMPR 59 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G E + LR P+ +L+ ++ D+V GL +GADDY+ KPF+ EEL+AR+RA+ Sbjct: 60 LDGLETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALT 119 Query: 117 RRSRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 RRSR +Q ++ D++++ + V G RI LT E+ +++ L + Sbjct: 120 RRSRPESQQANEVLSFADMTLDPQTREVTRGGRRISLTRTEFALLQTFMEHPGKVLDRSW 179 Query: 174 FLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 LN ++ G D P ++V+I LR+K + G I TV G GYVLRE A Sbjct: 180 LLNEVW-GFDFPATANSLEVYIGYLRRK-TEQEGEPRLIHTVRGVGYVLRETAP 231 >gi|269216634|ref|ZP_06160488.1| DNA-binding response regulator CiaR [Slackia exigua ATCC 700122] gi|269130163|gb|EEZ61245.1| DNA-binding response regulator CiaR [Slackia exigua ATCC 700122] Length = 234 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED++ L+ ++ ++ + V G++G K +D I+LDL L + G+ Sbjct: 10 MDILIVEDNRRLSDAMRQAIEPA-YGVQQAFDGDEGYFYAKDGIYDLIVLDLMLPGMSGY 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +VL LR K++TPV IL+ M +++++RGL++GADDY++KPF K+EL+ RI AI+RR + Sbjct: 69 DVLEKLRADKVTTPVLILTAMRGVDERIRGLRAGADDYLTKPFAKDELLLRIEAILRRCT 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL + D V + L G++Y ++E L RK ++K + ++ Sbjct: 129 DSFERKEFSFKDLVLYPDMHAAYVGDAEVKLKGRQYDVLEFLVSRKGQLVSKSQIFDRVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +++V++ +RK+L G Y++TV G GY+ E Sbjct: 189 GFMSDTSTNVVEVYVSAVRKQL-KPFGYDVYLQTVRGAGYLFGEGG 233 >gi|238028549|ref|YP_002912780.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] gi|237877743|gb|ACR30076.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 225 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ LAH + + L + F + GE + + +D ++LDL L + G Sbjct: 1 MRLLLVEDNEELAHWLAMTLTHDGFMLDRVGAGEAAEDALRASTYDVVLLDLNLPGVSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R +TPV IL+ ++++KV L +GADDYI KPF+ ELVARI+ + RR Sbjct: 61 TVLRRMRERGDATPVLILTATGAVDEKVVCLGAGADDYIVKPFDARELVARIKVLARRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G+L ++D + + LT +E+ ++E L LR T++K + Sbjct: 121 PSRSNRVRCGNLVYDMDRLQFAIDDAPLVLTPREHAVLEALMLRARKTVSKATLAESVSA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 I++++ +LR+KL ++ I T+ G GY+L + A DE Sbjct: 181 ADAPTSEDAIEIYVSRLRRKLEASSA---TIITLRGLGYLLEDGAADE 225 >gi|22537931|ref|NP_688782.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25011874|ref|NP_736269.1| hypothetical protein gbs1835 [Streptococcus agalactiae NEM316] gi|76798833|ref|ZP_00781044.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae 18RS21] gi|77409021|ref|ZP_00785740.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|61222656|sp|P0A4H9|DLTR_STRA3 RecName: Full=Transcriptional regulatory protein dltR gi|61222657|sp|P0A4I0|DLTR_STRA5 RecName: Full=Transcriptional regulatory protein dltR gi|22534830|gb|AAN00655.1|AE014273_2 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|18076414|emb|CAC83083.1| putative response regulator, DltR [Streptococcus agalactiae] gi|24413415|emb|CAD47494.1| Unknown [Streptococcus agalactiae NEM316] gi|76585807|gb|EAO62354.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae 18RS21] gi|77172362|gb|EAO75512.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K++A +I+ +L + ++V + G+DG+E +D ++LD+ L G Sbjct: 1 MRLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R A + TP+ L+ S DKV GL GADDYI+KPF +EL+ARIR R+S Sbjct: 61 SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G++ +N D+ +E + + L+ KE+ ++E+ + K ++ ++ Sbjct: 121 LIRANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D E ++VFI LRKKL I T G GY L E Sbjct: 181 PSDNSEYNQLEVFISFLRKKLRFLKADIEII-TTKGFGYSLEE 222 >gi|268611303|ref|ZP_06145030.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 228 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L+ I ML+ + E+ ++ F I+LD+ L D GFE Sbjct: 5 RILIVDDDTDLSFIISEMLEGCGYESLRAASAEEAFDILSHKSFHLILLDINLPDSEGFE 64 Query: 62 VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR K+S PV S ++ +D++R G DDY+ KP++ +EL++R+ A++RR+ Sbjct: 65 ICRQLR--KVSDVPVIFASARTAEDDRIRSFDIGGDDYLPKPYSMKELLSRVNALIRRAY 122 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + ++ G + +N +TV G ++ L +E+ ++ L +NT + KE L+ ++ Sbjct: 123 GQTEDKQLSFGGIVINTATRTVTRNGEKVMLAQREFDLLVYLCRNRNTAIPKEKLLSEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E + V I LR+KL + YI+TVW GY+L Sbjct: 183 GAFSEVEPSTLTVHIRWLREKLEDDPASPKYIKTVWRLGYML 224 >gi|213417018|ref|ZP_03350162.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213580461|ref|ZP_03362287.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612642|ref|ZP_03370468.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648225|ref|ZP_03378278.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213864844|ref|ZP_03386963.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828350|ref|ZP_06546263.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 223 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 220 >gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c] gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 227 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 127/223 (56%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F+V V G + + + D ++LD+ L + G E Sbjct: 3 RLLVVEDEESFSEALSFMLEREGFDVAVAADGHAALSDFERHGADLVLLDVMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RALR K S PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRALR-QKSSVPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRR-RG 120 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + G + ++++ V V G + L KE++++E+ LT+ ++ Sbjct: 121 SEPDEAAPVTLEAGGVRMDVERHVVTVHGAAVALPLKEFELLEMFLRNTGRVLTRGQLID 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ + G ++ TV G GY Sbjct: 181 RVWGSDYVGDTKTLDVHVKRLRAKIESEPGNPRHLVTVRGLGY 223 >gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 238 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 9/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + + L E + V+V GE+ ++ + D IILDL L I G E Sbjct: 4 KILVVDDEKPIVDIEKFNLTKEGYEVFVAYDGEEALKQVNEVDPDLIILDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K TP+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVRKTK-DTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S G I GDL ++ +A +V +G I LT +E++++ L+ +T+E Sbjct: 123 SSGNSSEGDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ +V+ +DV + +LR+K+ ++ ++ T G GY LR D+ Sbjct: 183 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYLRNPESDQ 237 >gi|182418450|ref|ZP_02949744.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum 5521] gi|237666633|ref|ZP_04526618.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377832|gb|EDT75376.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum 5521] gi|237657832|gb|EEP55387.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum E4 str. BoNT E BL5262] Length = 239 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDDKA+ + I L+++++ ++ + G I Y+ D IILDLGL DI G E Sbjct: 5 QILVVEDDKAIRNLITTTLETKDYKFHIAEDGAKAILEAISYKPDVIILDLGLPDIDGVE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R + P+ ++S S DK+ L +GADDY++KPF+ +EL+AR+R +RR Sbjct: 65 IISKIRTWS-NVPIIVVSARSDDSDKIEALDNGADDYLTKPFSVDELLARLRVALRRVNY 123 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + S + GDL ++ ++ V + IHLT EY++I LL+ LT L Sbjct: 124 NNEIKDSNGSTFLNGDLKIDYISRGVFIGEKEIHLTPIEYKLICLLAKNLGKVLTHNFIL 183 Query: 176 NHLYDG---RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ D P ++ VF+ LRKK+ YI+T G GY Sbjct: 184 KEIWGNVLPNDTPSLR---VFMATLRKKIEETPSRPKYIQTHVGIGY 227 >gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator PHOP [Mycobacterium tuberculosis H37Rv] gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator PHOP [Mycobacterium bovis AF2122/97] gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 94_M4241A] gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T92] gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T17] gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis 210] gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN R506] gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN V2475] gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium tuberculosis H37Rv] gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium bovis AF2122/97] gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CDC1551A] gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis W-148] gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] Length = 247 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F VY G ++ + DA+ILD+ + + GF Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ + Sbjct: 82 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141 Query: 121 GHAQSLIVTGDLS-VNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G+ + V + + LD +T EV G + L+ E+ ++ + T L+K L+H Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 202 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 245 >gi|304398000|ref|ZP_07379875.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304354286|gb|EFM18658.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 223 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + I+ L F+V GE G + +DA+ILDL L + G Sbjct: 1 MRILLIEDDRLIGDGIKAGLSKLGFSVDWFMSGESGFNALEAAPWDAVILDLSLPERDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ +++ +V+GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILREWRQQGNDVPVLILTARDALDQRVKGLQLGADDYLCKPFALTEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G++ + + +V +G I L +E ++EL + LT+ LY Sbjct: 121 GQLQPELRHGNVVLIPGSHSVMREGETIALKSRELALLELFMRNPSRVLTRSQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V I LRKKL G +I T+ G GY L Sbjct: 181 WDADVSSNAVEVHIHHLRKKL-----GSTFIRTLHGVGYTL 216 >gi|229819651|ref|YP_002881177.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565564|gb|ACQ79415.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 230 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD A+A + L E ++V V G IE D +LDLGL D+ G + Sbjct: 6 RVLLAEDDPAIAEPLARALTREGYDVSVHGTGRGAIEGAA--STDLFVLDLGLPDMDGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V R +R ++TPV +L+ + D V GL +GADDY++KPF EL+AR+RA++RR + Sbjct: 64 VARWIRNQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRAGA 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + ++ V++ A QG R + LT KE++++ +L + +++E + + Sbjct: 124 DGGDDDELSAQNVRVDVAAHRA-FQGERELQLTAKEFELLRVLVREAGSVVSRESLMREV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + K +D+ I LR+KL + A YI TV G G+ Sbjct: 183 WASDPTGSTKTLDMHISWLRRKLGDDANAPRYISTVRGMGF 223 >gi|71279007|ref|YP_269498.1| response regulator [Colwellia psychrerythraea 34H] gi|71144747|gb|AAZ25220.1| response regulator [Colwellia psychrerythraea 34H] Length = 243 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 31/245 (12%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ LA +++ L E F V G+ + D +ILDLGL DI G Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPSHDMVILDLGLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K PV IL+ SI+ KV+GL GADDY++KPF+ +EL+AR+R I RR Sbjct: 61 LVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIERR-L 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-----------QGH-------------RIHLTGKEYQ 156 G A S ++T D V+LD K+ +V Q H +H + KE+ Sbjct: 120 GTASSSMITID-RVSLDTKSHKVYLLQCNQVNNEQNHEQEGEINAQNGASEVHFSKKEFM 178 Query: 157 MIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216 +++ L ++E + LY +E ++V I KLRK L N +I+ V G Sbjct: 179 VLKALMENAGRIQSREQIESKLYQWGEEVLSNAVEVHIHKLRKNLPN-----KFIQNVRG 233 Query: 217 RGYVL 221 GY++ Sbjct: 234 VGYII 238 >gi|332800512|ref|YP_004462011.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332698247|gb|AEE92704.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 229 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + + L E +NV G++ I + + D I+LD+ L GF Sbjct: 4 KILVVDDEKPIVDILRYNLSKEGYNVLAAYDGDEAINIALKEDPDLILLDIMLPKQDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR KI++P+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VCKKLR-EKITSPIIMLTARGEEVDKVLGLELGADDYITKPFSMRELMARVKANLRRIAL 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + +I GDL ++L + V +G + LT +EY++I+ LS + T+E L Sbjct: 123 SEPGGEEEIIRLGDLELDLKSYVVRKRGKPLDLTFREYELIKYLSTQAGQVFTREKLLEE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +++ +DV + +LR+K+ + YI T G GY R+ Sbjct: 183 VWGYEYYGDIRTVDVTVRRLREKVEDDPANPTYIITKRGVGYYFRKQ 229 >gi|229591797|ref|YP_002873916.1| two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229363663|emb|CAY51014.1| two-component system response regulator [Pseudomonas fluorescens SBW25] Length = 226 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+ EDD+ +A I L ++ F V + K FD ++LDLGL D G Sbjct: 1 MHVLVCEDDELIASGIVAGLTAQGFTVERVATAGAARAMLKAATFDIMVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R + PV IL+ S+ ++V GLQ+GADDY+ KPF+ EL AR++ ++RR Sbjct: 61 KLLQQQRSQGLEIPVLILTARDSVTNRVDGLQAGADDYLLKPFDLRELAARLQTLLRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +LI G L+ N ++ + G + L+ +E +++ L K L+ E + +Y Sbjct: 121 GRSVNLIEHGRLAYNPSSRETFLGGQPVDLSRREQALLQALLHNKGRVLSSEQLKDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL N +ETV G GY L Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216 >gi|150388491|ref|YP_001318540.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948353|gb|ABR46881.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD ++A L+ F+V + G++G++ +++D IILD+ L GFE Sbjct: 3 KILILEDDISIAELQRDYLEINQFDVDIEARGDEGLQRALNHDYDLIILDIMLPGKDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R+ K +TP+ ++S DKVRGL GADDY++KPF+ ELVAR+RA + R Sbjct: 63 ICKEIRLTK-NTPILLVSAKKEDIDKVRGLGLGADDYMTKPFSPNELVARVRAHIARFER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + LI G++S+ +++V V +LT KE+ ++ LL+ KE Sbjct: 122 LTSNEDIHKGLIQVGEISIEQLSRSVFVNQKETNLTTKEFDLLYLLAQNPQRVFRKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++ + V I ++R+K+ YIET+WG GY R Sbjct: 182 ETIWGWDSFGDISTVTVHIRRIREKIERDPSNPKYIETIWGVGYKFR 228 >gi|126698102|ref|YP_001086999.1| two-component response regulator [Clostridium difficile 630] gi|254974121|ref|ZP_05270593.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255091521|ref|ZP_05320999.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255099627|ref|ZP_05328604.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255305511|ref|ZP_05349683.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255313249|ref|ZP_05354832.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255515939|ref|ZP_05383615.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255649031|ref|ZP_05395933.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260682222|ref|YP_003213507.1| two-component response regulator [Clostridium difficile CD196] gi|260685821|ref|YP_003216954.1| two-component response regulator [Clostridium difficile R20291] gi|306519145|ref|ZP_07405492.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115249539|emb|CAJ67355.1| Two-component response regulator [Clostridium difficile] gi|260208385|emb|CBA60900.1| two-component response regulator [Clostridium difficile CD196] gi|260211837|emb|CBE02243.1| two-component response regulator [Clostridium difficile R20291] Length = 234 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDDK + I++ L+++N+ TD G I L + D IILDLGL DI G EV Sbjct: 7 VLIVEDDKPICKFIKVSLETQNYRCVETDNGGTAISLIHSLDPDLIILDLGLPDIDGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + +R + + ++S DKV L GADDY++KPF+ EL+AR+R +R Sbjct: 67 IGRVRACAKTNKIIVVSAREHERDKVEALDGGADDYLTKPFSVTELLARVRVALRNKAQQ 126 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A +L ++ + V + G IHLT EY++IEL+S LT + ++ Sbjct: 127 DNINNDAPKSFEVKNLKIDYENHIVSINGEEIHLTPIEYKIIELMSKYSGRVLTHKFIID 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E E + + VF+ +R+K+ YI T G GY Sbjct: 187 KVWGNYYESENQSLRVFMASIRRKIEKNPAQPEYILTEVGVGY 229 >gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 248 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++ LA + L+ E + V G + + + D I+LD+ L D G Sbjct: 17 LRVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGL 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R + PV L+ ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS Sbjct: 77 EVMRRVRGHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + SL+ GDL ++ D+ V I LT E++++ L L+K L+ Sbjct: 137 ASEEKPASLLEVGDLRMDEDSHEVWRGDDEIQLTATEFELLRYLMRNPRRVLSKPQILDR 196 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ + I++++I LR+K+ G + I T+ G GYVL+ A Sbjct: 197 VWNYDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVLKPVA 242 >gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] Length = 240 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F VY G ++ + DA+ILD+ + + GF Sbjct: 15 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ + Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134 Query: 121 GHAQSLIVTGDLS-VNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G+ + V + + LD +T EV G + L+ E+ ++ + T L+K L+H Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 238 >gi|319745720|gb|EFV98017.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K++A +I+ +L + ++V + G+DG+E +D ++LD+ L G Sbjct: 1 MRLLVVEDEKSIAEAIQALLADKGYSVDLVFDGDDGLEYILTGLYDLVLLDIMLPKRSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R A + TP+ L+ S DKV GL GADDYI+KPF +EL+ARIR R+S Sbjct: 61 SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G++ +N D+ +E + + L+ KE+ ++E+ + K ++ ++ Sbjct: 121 LIRTNQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D E ++VFI LRKKL I T G GY L E Sbjct: 181 PSDNSEYNQLEVFISFLRKKLRFLKADIEII-TTKGFGYSLEE 222 >gi|225575707|ref|ZP_03784317.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM 10507] gi|225037087|gb|EEG47333.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM 10507] Length = 229 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A L+ F V + G+ G++ +FD IILDL L ++ GF+ Sbjct: 3 KILIVEDEEAIADLERDYLEISGFEVEIAHRGDIGLKRAMEEDFDLIILDLMLPEVDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQVREIK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLDRYER 121 Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + D + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LVGSGMPKNDVVEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D ++ + V I K+R+K+ YIET+WG GY Sbjct: 182 REIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGY 225 >gi|152976930|ref|YP_001376447.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025682|gb|ABS23452.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 230 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 10/226 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 ILLIEDD ++ +E L E F V GE+G+ KF+ FD IILD+ + + G Sbjct: 5 ILLIEDDISIQEMVEKYLSKEGFQVTFASDGEEGV--AKFFHGSFDLIILDIMMPKLDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR +A +RR Sbjct: 63 EVVRIIR-EKSAVPILMMSAKDTDIDKAVGLGLGADDYICKPFSMIELAARAKASIRRFT 121 Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + +I GDL ++ TV + ++ LT KE+++++L + +N TK Sbjct: 122 KYSATEQKEEMIEIGDLKIDPINFTVYKKEKQLKLTLKEFEILKLFARNQNRVFTKAQIY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N +++ + +I+V + +LR+K+ YI+T+WG GY L Sbjct: 182 NLIWNEEYYGDDNVINVHMRRLREKIETDPSNPEYIKTLWGIGYKL 227 >gi|325849744|ref|ZP_08170891.1| putative transcriptional regulatory protein CutR [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479973|gb|EGC83053.1| putative transcriptional regulatory protein CutR [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L +I LK + V G + +E+ + +D IILDL L + G Sbjct: 1 MKILIVEDEQILNDTINKSLKKSGYEVESAFDGINAMEMIEIESYDLIILDLNLPHMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR T V ILS S I+DKV GL +GA+D++ KPF+ +EL AR+R++ RR+ Sbjct: 61 EILKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S I + + + V V G + LT KE ++E L L + +++E + H++D Sbjct: 121 IQKNSEISFDKIEFDSKNRRVFVDGEELKLTRKEIGILEYLLLNQGRPISQEELIEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNY--IETVWGRGYVLRE 223 + I V I LRKKL N NY IE G GY+LR+ Sbjct: 181 SSVDLLSNSIRVHISALRKKLKNKL---NYDPIENRIGVGYLLRK 222 >gi|270160105|ref|ZP_06188761.1| transcriptional regulatory protein CpxR [Legionella longbeachae D-4968] gi|289165117|ref|YP_003455255.1| transcriptional regulatory protein CpxR [Legionella longbeachae NSW150] gi|269988444|gb|EEZ94699.1| transcriptional regulatory protein CpxR [Legionella longbeachae D-4968] gi|288858290|emb|CBJ12158.1| transcriptional regulatory protein CpxR [Legionella longbeachae NSW150] Length = 226 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD L + L+ E ++ GE+G++ FDA+ILD+ L + GFEV Sbjct: 5 ILIIDDDTELTDLLSQYLEPEGYHAVCVHDGENGVKKALNQPFDAVILDVMLPKLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+++R + TPV +L+ D++ GL+ GADDY+ KP N ELVAR+RAI+RR++ Sbjct: 65 LKSIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +I ++ V+ + V + GH + LT E+ ++E+L +KE + Sbjct: 124 PASKPIIEQHNIVVDCSKRHVTMAGHYLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + IDV I LR KL + G+ ++TV G GY+ Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYMF 224 >gi|221218319|ref|YP_002524346.1| two component transcriptional regulator, winged-helix family [Rhodobacter sphaeroides KD131] gi|221163346|gb|ACM04312.1| two component transcriptional regulator, winged-helix family [Rhodobacter sphaeroides KD131] Length = 229 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ L +++ + V + + +D +LDL L D G Sbjct: 11 MRILLIEDDEVLGNAVADHVAEAGHMVDRAKCLSEADDSLAVATYDLALLDLMLPDGLGI 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR R STPV IL+ + I +++ GL +GADDY+ KPF+ EL ARI ++ RR Sbjct: 71 PFLRKRRARGDSTPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYG 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ ++ G V+L A+T+ +G + LT +E+ ++E R N L+K L+ Sbjct: 131 GNPNPVVRLGAFEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V++ +LR+KL ++ IETV G GY L Sbjct: 191 FEAEIESNAIEVYVSRLRRKLDHSV-----IETVRGLGYRL 226 >gi|328951450|ref|YP_004368785.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328451774|gb|AEB12675.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 221 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD LA + L + + G D + + F+ +ILDL L D+ G E Sbjct: 5 RLLIVEDDPRLARLLVNELAAAGYAPSAVHTGSDALAKLEEEAFELVILDLNLPDLDGLE 64 Query: 62 VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V A RVA + T + +L+ +E +V+GL +GA DY++KPF+ +EL+AR+ A +R + Sbjct: 65 V--AHRVAGQKDTSILMLTARGDVESRVQGLYAGASDYVTKPFSLKELLARVHARLRERK 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H + +I G L ++ + V G + LT +EY ++ELL + + +KE + LY Sbjct: 123 RH-EDVIRVGTLELDRVKRQCRVDGAVVPLTAREYALLELLLVNRGRIFSKEELEDRLY- 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 G D P I+VFI LR+KL+ A G + I TV G GYV+R Sbjct: 181 GMDLPASNTIEVFISNLRRKLA-ARGVQGLITTVRGMGYVVR 221 >gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 227 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 126/225 (56%), Gaps = 11/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIP 58 RIL+++DD+ +A IE+ LK++ Y+ D DG+E K E D I+LD+ + + Sbjct: 3 RILIVDDDRQIADLIEVYLKNDG---YIIDKAGDGMEALKKLEQDPPDLIVLDIMMPKMD 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E + +R P+ ++S + DK+ GL +GADDY+ KPFN EL AR++A++RR Sbjct: 60 GLEFCKYVRKNN-QVPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALLRR 118 Query: 119 SR----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G A ++ G ++++ + V +G I LT +E++++ LL+ + E Sbjct: 119 ANYKTTGKADDVLYIGSVAIDKRSHGVTAEGSEIKLTAREFEILYLLAKNRGRVYASEEI 178 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ E K + V I +R+KL A G++ I+TVWG GY Sbjct: 179 FEKVWNEPGEGSNKTVMVHISNIREKLEAALPGESVIQTVWGVGY 223 >gi|237729952|ref|ZP_04560433.1| DNA-binding transcriptional regulator QseB [Citrobacter sp. 30_2] gi|226908558|gb|EEH94476.1| DNA-binding transcriptional regulator QseB [Citrobacter sp. 30_2] Length = 227 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + ++ L F++ G G E +DA+ILDL L I G Sbjct: 9 MRILLIEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLPGIDGR 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 69 DILREWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G ++++ A G + L KE+ ++ELL K L +++ LY Sbjct: 129 GQASNTLCHGQVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLYT 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V + LR+KL G ++I TV G GY L Sbjct: 189 WDENVSSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTL 224 >gi|239816532|ref|YP_002945442.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239803109|gb|ACS20176.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 225 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 131/228 (57%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL+IED+ L ++ L+ N YV D+ DGIE L ++ I+LD+ L I Sbjct: 1 MRILVIEDEPKLGDYLKKGLEE---NGYVVDIARDGIEGRYLATEGDYALILLDVMLPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VL+A+R + PV +L+ +ED+V GLQ GADDY+ KPF+ EL+ARI+A++R Sbjct: 58 DGFAVLQAIRRTS-NVPVLVLTARDKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + +++ DL ++L ++ R+ LT KE+ ++ +L R+ L++ Sbjct: 117 RGKPQESTVLRLADLELDLASRKCFRNRTRLDLTAKEFTLLVVLLRRRGQILSRSTLAEQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ + + +++V I +LR K+ + K + TV G GYVL + + Sbjct: 177 VWEMNFDSDTNVVEVAIRRLRSKIDDPFEVK-LLHTVRGMGYVLEDRS 223 >gi|297202432|ref|ZP_06919829.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197710046|gb|EDY54080.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 219 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 9/221 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +++ED++ LA S+ L +E + V V G +G+ +D +ILD+ L + G+ V Sbjct: 1 MIVEDERRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVILDIMLPGLNGYRVC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH- 122 ALR A P+ +L+ D+ GL +GADDY++KPF+ LVARI+A++RR RG+ Sbjct: 61 AALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRR-RGNG 119 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ G+L ++ A V + G + LT KE+ ++E L+LR ++K L H++D Sbjct: 120 AGASPVLELGELRIDTAAHRVFLDGSEVTLTAKEFSVLEQLALRAGEVVSKAQILEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I++V++ LR+KL I TV G GY L Sbjct: 180 FAYDGDPNIVEVYVSTLRRKLD-----AGLIRTVRGAGYRL 215 >gi|312960504|ref|ZP_07775011.1| DNA-binding response regulator [Pseudomonas fluorescens WH6] gi|311285238|gb|EFQ63812.1| DNA-binding response regulator [Pseudomonas fluorescens WH6] Length = 227 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L S +V D G +G+ ++D I LD L ++ G Sbjct: 3 RILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLVRAVSGDYDLITLDRMLPELDGLA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR +STP+ ++S +S ++++VRGL++G DDY++KPF +E+ AR+ ++RR Sbjct: 63 IVTTLRTIGVSTPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRKST 122 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + DL +NL ++ + L EY+++E L L++ M ++ Sbjct: 123 VKEFETALRVADLELNLISREASRADQPLTLLPTEYKLLEFLMRNTGQILSRMMIFEEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ + G I TV G GYV+ E Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DPPGLTPLIRTVRGSGYVIAE 225 >gi|300690245|ref|YP_003751240.1| response regulator, cheY family [Ralstonia solanacearum PSI07] gi|299077305|emb|CBJ49931.1| putative response regulator, CheY family [Ralstonia solanacearum PSI07] Length = 235 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL+ED++ LA + L F V + DG+ F EFDA++LDL L Sbjct: 1 MRILLVEDEEELAAWLSRALAQSGF---VVERAADGLAAEAFLASGEFDAVVLDLRLPRK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VL +R TPV IL+ +++++VRGL +GADD+++KPF EL AR+ A++R Sbjct: 58 DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG A + G L + K + G + LT +E+ + L + ++K + Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ + ++V + +LRKKL AG I TV G GY+L A Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGSGVQIVTVRGLGYLLEAEA 222 >gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 242 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V+ G + L + D ++LD+ L D+ GF Sbjct: 11 RLLVVDDEPNIRELLATSLRFAGFEVHAAADGTSALRLARDTHPDLVVLDVMLPDMDGFS 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R LR PV L+ DKV+GL G DDY++KPF+ EE+VARIRAI+RR+ Sbjct: 71 VTRRLREKGEHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTAP 130 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G S++ DL ++ D V GH + L+ E++++ L L L+K L+H+ Sbjct: 131 DEGADSSVLRYADLELDDDTHEVRRAGHPVELSPTEFKLLRYLMLNPQRVLSKSQILDHV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKK---LSNAAGGK--NYIETVWGRGYVLRENA 225 + + I++ +I LR+K L++A G + I T G GY+LRE+ Sbjct: 191 WQYDWGGDANIVESYISYLRRKIDQLTDADGRRLPPLIHTRRGVGYLLRESP 242 >gi|254412739|ref|ZP_05026512.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180474|gb|EDX75465.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 235 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 14/231 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 M++LL+ED+ L +I+ L E YV D DG E + E + I D L Sbjct: 1 MKVLLVEDEPDLGAAIKRALSLEK---YVVDWVVDGTEAWGYLENQEMQYTLAIFDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 ++ G E+LR LR K S PV +L+ +ED+V GL +GADDY+ KPF EL+AR+RA+ Sbjct: 58 ELSGLELLRRLRANKSSLPVLMLTAKDRLEDRVAGLDAGADDYLVKPFRMAELLARVRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTV-----EVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RRS + G L+++ +TV + + + LT KEYQ++E N +T Sbjct: 118 QRRSPQLQPQQLQVGSLTLDCGTRTVYRVAAKGEKQEVPLTNKEYQLLEYFMRHPNQVVT 177 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + N L++ EP ++ I LR+KL + G IETV G GY L Sbjct: 178 SDQIRNQLWEVSAEPLSNVVAAQIRLLRRKL-ESIGCAIPIETVHGIGYRL 227 >gi|167768425|ref|ZP_02440478.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1] gi|317499213|ref|ZP_07957488.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709949|gb|EDS20528.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1] gi|291560400|emb|CBL39200.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893527|gb|EFV15734.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 229 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED+ ++A + L+ +F V + G+ G+E +FD IILD+ L + GFE Sbjct: 3 KVLIVEDELSIAELEKDYLELSSFEVEIETDGQQGLEKALKNDFDMIILDIMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R AK P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIREAK-EIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLNRYQR 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ +I L ++ A+ V + G T KE+ ++ L+ N TKE Sbjct: 122 LVNNQMEVNDIIEIRGLKIDKTARRVYLNGEEKVFTTKEFDLLTFLAGHPNRVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 N ++D ++ + V I K+R+K+ YIET+WG GY Sbjct: 182 NKIWDMESLGDIATVTVHIKKIREKIEVNTAKPQYIETIWGVGY 225 >gi|16760106|ref|NP_455723.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142123|ref|NP_805465.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052791|ref|ZP_03345669.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428093|ref|ZP_03360843.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|73621401|sp|Q8Z7H2|PHOP_SALTI RecName: Full=Virulence transcriptional regulatory protein phoP gi|25300977|pir||AH0646 transcription regulatory protein PhoP, regulator of virulence determinants STY1271 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502400|emb|CAD08355.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Typhi] gi|29137752|gb|AAO69314.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 224 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 2 MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 59 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 119 RNSGLASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 221 >gi|302542452|ref|ZP_07294794.1| transcriptional regulatory protein PcoR [Streptomyces hygroscopicus ATCC 53653] gi|302460070|gb|EFL23163.1| transcriptional regulatory protein PcoR [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 130/222 (58%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA S+ L++E F V V G +G+ + +D I+LD+ L + G+ Sbjct: 1 MRLLIVEDERRLALSLAKGLRAEGFAVDVVHDGREGLHRAQEGTYDLIVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR+RA++RR Sbjct: 61 RVCGALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ G L+V+ A+ VE G + LT KE+ ++E L++ +K L H++D Sbjct: 121 SGASPVVRVGALAVDRGARRVERDGDEVSLTAKEFSVLEHLAMNGGDVCSKADILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++V++ LR+KL G +IETV G GY LR Sbjct: 181 FAYDGDPNIVEVYVSALRRKL-----GPGFIETVRGAGYRLR 217 >gi|222150271|ref|YP_002559424.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402] gi|222119393|dbj|BAH16728.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402] Length = 233 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 129/228 (56%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+K +A +E LK E + V+V G+D +EL + D ++LD+ L G E Sbjct: 4 KIVVVDDEKPIADILEFNLKKEGYEVHVAYDGDDAVELIYDIQPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 QS IV D+ V +A +++ +G I LT +E+++ L+ +T+E Sbjct: 123 QTQSEEKEESTNIVIKDIVVYPEAYSIKKRGIDIELTHREFELFHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV I +LR+K+ + A YI T G GY L+ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDASHPEYIVTRRGVGYFLQ 230 >gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 249 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 126/235 (53%), Gaps = 12/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ALA + L ++V G D + + + + D I+LDLGL + G E Sbjct: 14 RVLVVDDERALAQMVSTYLARAGYSVSEAYTGPDALSMARALDPDVIVLDLGLPGLDGVE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R V +L+ D++ GL GADDYI+KPF+ ELVAR++A++RR R Sbjct: 74 VCRQIRTFS-DCYVLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLRRPRQ 132 Query: 122 HA-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + + GDL+++ ++V V G + LT E+ ++++LS R + Sbjct: 133 RGAGSSRDQAHREEPARLFGDLTIDPAGRSVSVAGSAVLLTRTEFDILDVLSARPKYAFS 192 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ ++D + I+DV + +R+KL + YI+TV G GY + + A Sbjct: 193 RRQLIDEVWDIAWVGDEHIVDVHVGHIRRKLGDDPTTPRYIDTVRGVGYRMGQGA 247 >gi|254507166|ref|ZP_05119303.1| two-component response regulator protein [Vibrio parahaemolyticus 16] gi|219549876|gb|EED26864.1| two-component response regulator protein [Vibrio parahaemolyticus 16] Length = 224 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD+ + L+ + V + G G+ + E+D ++LD L + G Sbjct: 1 MKLLIIEDDQTTREFVAKGLQEHGYTVDQAEDGNSGLMMALSGEYDLVVLDRMLPYLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL A++ PV ILS M S+ED+V GLQ+G+DDY+ KPF EL+AR+ I+ R++ Sbjct: 61 KVLSAIKATLEHLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIIHRNQ 120 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S + L+V+L A V + L KE+Q+I+ +++ + Sbjct: 121 RQTKPHSTLSYDCLTVDLRAHRVTCNNTELQLQPKEFQLIQHFIEHSEQVVSRMRLFESI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV + LR+KL AG ++ + TV G GYVLR Sbjct: 181 WSYHFDPKTNVIDVHVANLRRKLEE-AGCRDLLHTVRGAGYVLR 223 >gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MRIL+++DD+A+ S+ +S FN Y D G+D ++ DA++LDL + + Sbjct: 1 MRILVVDDDRAVRESLR---RSLTFNGYQVDTAVDGQDALDHIASNRPDALVLDLNMPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR A P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+RA++R Sbjct: 58 DGLEVCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLR 117 Query: 118 RSRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R+ S ++ DL+++ + V I LT E+ ++E+L LT+ Sbjct: 118 RAVPDTASDNEVLRFEDLTLDPATREVSRGDRSISLTRTEFSLLEMLMGNPRRVLTRSRI 177 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V++ LR+K + A G I TV G GYVLRE Sbjct: 178 LEEVW-GYDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 228 >gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315] gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122] gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781] gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus A9763] gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719] gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635] gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299] gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115] gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300] gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224] gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948] gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937] gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30] gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3] gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A8117] gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus C160] gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus Btn1260] gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M899] gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus D139] gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A9765] gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp. aureus C427] gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus C101] gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A10102] gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus H19] gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus A017934/97] gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus 58-424] gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus M809] gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M1015] gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796] gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315] gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122] gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781] gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus A9763] gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719] gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635] gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299] gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115] gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300] gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224] gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948] gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937] gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3] gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30] gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus TW20] gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus C101] gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp. aureus C427] gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus D139] gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M899] gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A10102] gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A9765] gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus C160] gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A8117] gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus H19] gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ST398] gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus A017934/97] gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981] gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M1015] gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus 58-424] gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus M809] gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796] gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11] gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46] gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus T0131] gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21172] gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21193] Length = 235 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 6 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 66 VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 124 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G+ + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 125 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 185 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 234 >gi|306834849|ref|ZP_07467910.1| response regulator [Corynebacterium accolens ATCC 49726] gi|304569273|gb|EFM44777.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 268 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 102 VCRRIRTFSDCY-ILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTQGRGFIDTVRGVGY 263 >gi|238063010|ref|ZP_04607719.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237884821|gb|EEP73649.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 229 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+L+++DD ALA + ++L+SE F +V D GE + + D ++LDL L + G Sbjct: 4 RVLVVDDDPALAEMLGIVLRSEGFLPSFVAD-GERALAAFRENRPDIVLLDLMLPGMSGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V RA+R + P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 63 DVARAIR-GESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGE 121 Query: 121 GHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A L+ G +S+++ A TV G + LT E+ ++ L+ + T+E+ L Sbjct: 122 DVAPELLTVGPPGNQISIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + ++++V + +LR K+ I TV G GY Sbjct: 182 QVWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGY 224 >gi|269123509|ref|YP_003306086.1| two component transcriptional regulator, winged helix family [Streptobacillus moniliformis DSM 12112] gi|268314835|gb|ACZ01209.1| two component transcriptional regulator, winged helix family [Streptobacillus moniliformis DSM 12112] Length = 224 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 126/223 (56%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A IE+ LK E F++ + + G++G+ K+ FD I+LD+ L + GFE Sbjct: 4 KILIIEDDVKIARIIEVELKFEGFDIQIENDGKEGLLAAKYNHFDLILLDVMLPKMNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R P+ L+ I DKV GADDYI+KPF+ EEL+AR++A++RRS Sbjct: 64 VCKRIR-EDSDVPIIFLTAKDQITDKVISFDYGADDYITKPFSNEELIARVKALLRRSTL 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + DL ++ A V G I L+ KE+++++ L L K L ++ L ++ Sbjct: 123 KNKKKEDFIFEDLRISYTAHEVYRGGELIQLSKKEFELLDYLVLNKGIVLGRDSILEEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 I+D++I LR K+ K +I+T G G+V + Sbjct: 183 GFDQIGNNNILDLYIKYLRDKIDKPYLRK-FIQTKRGIGFVFK 224 >gi|218677215|ref|YP_002396034.1| putative DNA-binding response regulator [Vibrio splendidus LGP32] gi|218325483|emb|CAV27655.1| putative DNA-binding response regulator [Vibrio splendidus LGP32] Length = 224 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD + L+ + V + G+ G+ + E+ +ILD L + G Sbjct: 1 MKILIIEDDTTTREFVAKGLEEHGYAVDQAEDGKKGLMMALSSEYQLVILDRMLPYLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL A++ + + PV ILS M S+ED+V GLQ+G+DDY+ KPF ELVAR+ I+ R++ Sbjct: 61 KVLSAIKATEENLPVLILSAMDSVEDRVSGLQAGSDDYLIKPFALAELVARVDIIINRTK 120 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ ++ L ++L A V + + L KE+Q+I+ +++ + Sbjct: 121 RQPVTETNLIYDCLDIDLRAHRVVCKNQDLQLQPKEFQLIQYFVEHSEQVVSRMRLFEAI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV + LR+KL AG + + TV G GYVLR Sbjct: 181 WSYHFDPKTNVIDVHVANLRRKLEE-AGCPDLLHTVRGAGYVLR 223 >gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] Length = 240 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F VY G ++ + DA+ILD+ + + GF Sbjct: 15 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ + Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134 Query: 121 GHAQSLIVTGDLS-VNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G+ + V + + LD +T EV G + L+ E+ ++ + T L+K L+H Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 195 VWRYDFGGDVNVVESYVLYLRRKIDT--GEKRLLHTLRGVGYVLRE 238 >gi|158321804|ref|YP_001514311.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158142003|gb|ABW20315.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 229 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K ++ + L+ E + V V GEDG+ D ++LD+ L + GF+V Sbjct: 5 ILIVEDEKPISDIVRFNLEKEGYKVLVAYDGEDGVNKALTLNPDLVLLDVMLPKLDGFQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A S P+ +L+ DKV GL+ GADDYI+KPF EL+AR++A +RR+ Sbjct: 65 CRKIR-ASSSVPILMLTAKEEEVDKVLGLEMGADDYITKPFGMRELLARVKANLRRTESG 123 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S + TG + ++ V I LT +E+++++ L+L+ T+E L + Sbjct: 124 SGSNLEGIFTTGGIVIDFSKYEVRKNDTVIELTSREFELLKFLALQAEQVFTREQLLKQV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++ +DV + +LR+K+ + + YI T G GY R Sbjct: 184 WGYEYYGDIRTVDVTVRRLREKVEDNSAEPEYIMTKRGVGYYFR 227 >gi|240080009|ref|ZP_04724552.1| BasR [Neisseria gonorrhoeae FA19] gi|240127506|ref|ZP_04740167.1| BasR [Neisseria gonorrhoeae SK-93-1035] gi|268596151|ref|ZP_06130318.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268685880|ref|ZP_06152742.1| BasR [Neisseria gonorrhoeae SK-93-1035] gi|268549939|gb|EEZ44958.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268626164|gb|EEZ58564.1| BasR [Neisseria gonorrhoeae SK-93-1035] Length = 224 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A ++ LK + V G +D ++LDLGL G Sbjct: 1 MRVLLVEDDAMIAEAVSASLKDGGYAVDWVKNGAQVAAAAAAQPYDLMLLDLGLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R A + PV I++ + ++ GL GADDYI KPF+ E AR+RA++RR Sbjct: 61 DVLSEIRAAGCTVPVLIVTARDDLYSRLNGLDGGADDYIVKPFDMAEFKARMRAVLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G AQ+ + G LS+N VE+ +G ++ L+ KE+ +++ L R L++ + + Sbjct: 121 GQAQACLSNGALSLNPATYQVEIIAEGRQVALSNKEFSVLQALLARPGVILSRSDSEDKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225 Y E E +D I L KKL GK I+ V G G+++ R++A Sbjct: 181 YGWGGEVESNAVDFLIHGLCKKL-----GKESIQNVRGVGWLMPRQDA 223 >gi|116695586|ref|YP_841162.1| response regulator [Ralstonia eutropha H16] gi|113530085|emb|CAJ96432.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 229 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F V + G DG+ + + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR + TPV L+ + D+++GL+ GADDY+ KPF ELV RIR I+RR Sbjct: 61 QVLRELRRER-DTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I DL ++ + V G +I LT KE+ ++ LL+ R+ L++ + + ++D Sbjct: 120 LRESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV I +LR K+ + K I T G GYVL Sbjct: 180 VNFDSNTNVVDVSIRRLRAKVDDPFPHK-LIHTRRGMGYVL 219 >gi|62181691|ref|YP_218108.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129324|gb|AAX67027.1| putative transcriptional regulator (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716176|gb|EFZ07747.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 270 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F++ G G E +DA+ILDL L + G Sbjct: 52 MRILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 111 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + G + L KE+ ++ELL K L +++ LY+ Sbjct: 172 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V + LR+KL G +I TV G GY L Sbjct: 232 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 267 >gi|297579645|ref|ZP_06941572.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535291|gb|EFH74125.1| transcriptional regulator [Vibrio cholerae RC385] Length = 224 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + H + + DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIGLTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ +LRKK+ + + I+T G GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221 >gi|313792774|gb|EFS40855.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL110PA1] gi|313803438|gb|EFS44620.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL110PA2] gi|314964147|gb|EFT08247.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL082PA1] gi|315078949|gb|EFT50967.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL053PA2] gi|327457282|gb|EGF03937.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL092PA1] Length = 227 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ +DD ++ + L + + V +T G+ +E+ ++ D I+LDLG+ + G Sbjct: 1 MRILIADDDPQFLRALRITLGARGYEVLLTRDGQHALEMAIDHKPDIILLDLGMPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V+ A+R S P+ ++SG S +KV L +GADDY++KPF+ +EL+ARIR + RR Sbjct: 61 KVIEAVR-GWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLTRRIG 119 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ G + V+L A TV G + LT E++++ELL + +T++ L+ Sbjct: 120 QDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTRQTMLSQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + ++I +LRKKL Y+ T G GY L Sbjct: 180 VWGSEHVTDTGYLRLYISQLRKKLEPEPSRPRYLITDAGMGYRL 223 >gi|251787958|ref|YP_003002679.1| DNA-binding transcriptional regulator BasR [Dickeya zeae Ech1591] gi|247536579|gb|ACT05200.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 232 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + +++E + ++ L + ++LDLGL D G Sbjct: 1 MKLLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R PV IL+ +++D+V GL GADDY+ KPF E AR+RA++RR + Sbjct: 61 TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I +++++L+ + V + I LT KE+ ++ L L+ + + +E+ LY Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN--AKDE 228 D+P ++V I LR+K+ GKN I+T+ G GY+L ++ +KDE Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI-----GKNRIKTLRGFGYLLTKDDQSKDE 225 >gi|227529808|ref|ZP_03959857.1| two component response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350292|gb|EEJ40583.1| two component response regulator [Lactobacillus vaginalis ATCC 49540] Length = 225 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 120/203 (59%), Gaps = 1/203 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED++ LA +++ ++ + V + G+ +EL + +DAIILD+ + G Sbjct: 5 MRILLAEDEEQLARVLKMAMEQSGYQVDAVENGQAAVELSQKNAYDAIILDIMMPIKNGI 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R T + +L+ M+ +D+V GL SGADDY++KPF+ +EL+AR+R++ RR++ Sbjct: 65 EALKEIRARGDRTYIMMLTAMAEEDDRVNGLDSGADDYLTKPFSLKELLARLRSLERRAK 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL ++ D + +E + I L+ +E QM+ L LT + LNH++ Sbjct: 125 DYGDGDLEFADLHLDSDEQVLE-SSNSISLSREETQMLGYFILNAGKKLTADDLLNHVWS 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203 DE + + + + IC LR+K + Sbjct: 184 ADDEADAEDVWINICYLRQKFQS 206 >gi|218291254|ref|ZP_03495238.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218238856|gb|EED06067.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 230 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ +A+ + L+ E + V G + ++ + + D I+LD+ L ++ GF+V Sbjct: 5 ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALQRWRALQPDLILLDVMLPEVDGFDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 LRA+R A PV IL+ DKV GL+ GADDY++KPF+ ELVAR++A +RR+ Sbjct: 65 LRAIRQAS-GVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASDV 123 Query: 120 -RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R H ++ V DL ++L TV G I LT +E+Q++ +L+ T++ ++ Sbjct: 124 LREHRENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVDQ 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV I +LR+KL Y+ T G GY +R Sbjct: 184 VWGSDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGYYVR 228 >gi|254284870|ref|ZP_04959836.1| transcriptional regulator [Vibrio cholerae AM-19226] gi|150424873|gb|EDN16650.1| transcriptional regulator [Vibrio cholerae AM-19226] Length = 224 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + H + + DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ +LRKK+ + + I+T G GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221 >gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] Length = 234 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+AL I LK E + V G + F+ +ILDLGL + G Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR A PV +L+ + D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ + ++ + V QG I+L KE+ ++ L + LT++ LY Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E ++V I LRKK I TV G GY++ Sbjct: 196 WDEDVESNALEVHIHHLRKKFF-----PELIRTVRGVGYLV 231 >gi|157962629|ref|YP_001502663.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847629|gb|ABV88128.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 225 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 +R+LLIEDD+ LA ++ +LM S + ++ G G+ L +D +++D+GL + G Sbjct: 2 IRVLLIEDDRDLAETLLQLMEMSHMLPDHASN-GIAGLNLASNNHYDVLVIDVGLPKLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + + LR TP+ L+ SSI++K+ G SG DDY++KPF+ EL+ARI A+ R Sbjct: 61 YSICKQLRANGADTPILFLTAFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRK 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + L + G L +N + + V QG I LT Y ++E+L ++++ N L+ Sbjct: 121 SSHVKRLDIAG-LIMNCEQQQVSYQGQTIELTPACYTLLEMLMRASPEVVSRQSLENKLW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G + P ++ I LR+ L+ + + T GRG+ LR + Sbjct: 180 -GDEPPSSNVLKAHIYYLRRALTQVQLAQ-MLYTSTGRGWALRPS 222 >gi|71066630|ref|YP_265357.1| OmpR family two-component transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039615|gb|AAZ19923.1| probable two-component transcriptional response regulator (ompR family) [Psychrobacter arcticus 273-4] Length = 224 Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD +A I L LKS V + G + FDA++LDL L G Sbjct: 3 RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEMALQDGMFDAVLLDLTLPKGDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ R I TPV I++ +I ++V GL +GADDY+ KPF +E++AR++A++RRS+G Sbjct: 63 VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVIARLQALMRRSQG 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +Q + G+++ + V QG + LT KE ++E + ++ + LY Sbjct: 123 RSQPEVRYGEVAYQPHNQQVSYQGKTVELTIKEVAILEQMLTHPKQIHSRASLEDKLYGW 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E I+V I LRKKL N ++I T G GY L Sbjct: 183 KQDIESNAIEVHIHHLRKKLGN-----DFILTKRGIGYYL 217 >gi|84622660|ref|YP_450032.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366600|dbj|BAE67758.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 233 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA +I ++ V G + ++ FD ++LD+GL + G Sbjct: 1 MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++RR+R Sbjct: 61 RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G + A T+ + G I L +EY++ ++L R + K+ N L+ Sbjct: 121 GQASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ I++++ +LR+KL+ A I TV G GY L E Sbjct: 181 FDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220 >gi|224584977|ref|YP_002638776.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469505|gb|ACN47335.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 219 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F++ G G E +DA+ILDL L + G Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + G + L KE+ ++ELL K L +++ LY+ Sbjct: 121 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V + LR+KL G +I TV G GY L Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216 >gi|319781533|ref|YP_004141009.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167421|gb|ADV10959.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D+ + + + L S+ + + IEL + + D ++LDLGL + G Sbjct: 6 VRILVVDDEPPIRKLLRVGLGSQGYAISEAPNARAAIELMEAEKPDLVLLDLGLPGMSGH 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+LR R + PV ILS + V+ L+ GADDY++KPF ELVARIR +R Sbjct: 66 ELLRKWRDDGLDIPVVILSSRTDEAGIVQALELGADDYVTKPFGMNELVARIRVALRHKF 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + TGDLSV+L + V+V+G + L+ KEY ++ +L LT L + Sbjct: 126 QQQGEKPIFQTGDLSVDLVKRIVKVEGKEVKLSPKEYDILRMLVQHAGKVLTHHFLLKQV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + D +V+ + V++ +LR+K+ + YI T G GY LRE Sbjct: 186 WG--DSTDVQYLRVYVRQLRQKIEKSPDQPRYITTETGVGYRLRE 228 >gi|90021593|ref|YP_527420.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89951193|gb|ABD81208.1| Heavy metal response regulator [Saccharophagus degradans 2-40] Length = 226 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ ++ L F V + G DG L FD +ILD+ L D+ G+ Sbjct: 1 MRLLVVEDEVKTGDYLQQGLSEAGFMVTLARNGLDGHHLAMTETFDLLILDVMLPDVGGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++++R + PV L+ S++D+V+GL+ GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 RIVQSIRESGCQAPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRST 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I DL ++L G +I+L+ KE+ ++ELL+ R+ L + + + ++ Sbjct: 121 APVLADQITVADLILDLPKHRALRGGRKINLSHKEFCLLELLARRQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ K I TV G GY L Sbjct: 181 DMNFDSDTNVIDVAIRRLRSKIDEGFEPK-LIHTVRGMGYKL 221 >gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 248 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L F+V G D I + ++ D ++LD+ L D G+E Sbjct: 12 KILVVDDEPSIRELLSASLHFAGFSVETAATGRDAIRTYQEFDPDLVVLDVMLPDFDGYE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R PV L+ + DK++GL +GADDY++KPF+ EE+V RI+ I+RR+ Sbjct: 72 VLRRMREQGSDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVILRRTTP 131 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + +LI DL +N D V +GH + L+ EY+++ L + ++K L+H++ Sbjct: 132 SEEDSALIRYHDLELNEDTYEVRRRGHMVELSPTEYKLLRYLMVNAERVVSKVQILDHVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGK-----------NYIETVWGRGYVLR 222 D E I++ +I LR+K+ +A G I T G GYV+R Sbjct: 192 DYDWIGEASIVESYISYLRRKIDSADGLGITDPKEVAALVPLIHTKRGIGYVMR 245 >gi|254787133|ref|YP_003074562.1| RstA family transcriptional regulator [Teredinibacter turnerae T7901] gi|237685183|gb|ACR12447.1| transcriptional regulatory protein RstA [Teredinibacter turnerae T7901] Length = 229 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 127/230 (55%), Gaps = 12/230 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD+ LA ++ L+S F V V ++G + + D +ILD+ L G + Sbjct: 4 VLLAEDDRRLAELVKDYLESHGFQVVVEEVGHTVPRAVQSLDPDIVILDVMLPGKDGLTI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + +R + + P+ +L+ S D+V GL+ GADDY+ KP L+ARIRA++RR + Sbjct: 64 CKEIR-PRYNGPILMLTARDSDADQVSGLEYGADDYVIKPAEPRVLLARIRALLRRYQQG 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 QS + GDLS+ + ++ V++ G I L+ E+ M+ + + L++E N +Y Sbjct: 123 EDKEQSELHFGDLSIFVSSREVKLGGEIISLSSHEFDMLVTFAKQPGKVLSREYLFNVIY 182 Query: 180 ----DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 DG D + IDV I +LRKKL + + N I+TVWGRGY+ A Sbjct: 183 GRPYDGMD----RTIDVRISQLRKKLGDHSDDPNRIKTVWGRGYLFVAEA 228 >gi|229588980|ref|YP_002871099.1| two component system, response regulator [Pseudomonas fluorescens SBW25] gi|229360846|emb|CAY47704.1| two component system, response regulator [Pseudomonas fluorescens SBW25] Length = 223 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G E+ A ILD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKSTGLTVDVLHDGVAADLALSSEEYAAAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L +LD + V G + LT +E ++E L R ++KE + ++ Sbjct: 121 LGGERQQACGVLVYDLDTRRFTVGGELMTLTSREQAVLEALIARPGRVMSKEQLASQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I++++ +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GQPIAIVTFRGLGYLL 218 >gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2] gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus COL] gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED98] gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132] gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus A9754] gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819] gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1] gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus] gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2] gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus COL] gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED98] gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus A9754] gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819] gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED133] gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus JKD6159] gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03] gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00] gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus CGS01] gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21189] Length = 233 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G+ + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 230 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ A+ I + LK F+V+ G + + FD ++LD+ + ++ GFE Sbjct: 3 RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 A+R + + +L+ + EDK+ GL GADDYI+KPF+ ELVARI+A++RR Sbjct: 63 ACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRVEK 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ L +G +++L AK V G I LT EY +I L + L+++ L+ Sbjct: 123 VKRKDSKRL-KSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLDA 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + K +DV I +LR+K+ + YIET+WG GY R + Sbjct: 182 VWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWRRH 228 >gi|229087092|ref|ZP_04219243.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-44] gi|228696236|gb|EEL49070.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-44] Length = 230 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++ +E L E F + + GE+G+ FD IILD+ + + G EV Sbjct: 5 ILLVEDDISIQEMVETYLSKEGFQITIASDGEEGVLAFLKGSFDLIILDIMMPKLDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R K + P+ ++S + DK GL GADDYI KPF+ EL AR++A +RRS + Sbjct: 65 VRIIR-EKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + I GDL ++ TV ++ LT KE+++++L +N TK N Sbjct: 124 SATEQKEERIAIGDLKIDPINFTVHKNEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYNL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +I+V + +LR+K+ + YI+T+WG GY L Sbjct: 184 IWSEEYYGDDNVINVHMRRLREKIEDDPSSPKYIKTLWGIGYKL 227 >gi|89899236|ref|YP_521707.1| two component heavy metal response transcriptional regulator [Rhodoferax ferrireducens T118] gi|89343973|gb|ABD68176.1| two component heavy metal response transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 227 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L F V + G DG+ ++D ILD+ L + G+ Sbjct: 1 MKILIVEDEPKTGDYLKQGLGEAGFVVDLLRDGTDGLHHALTEDYDLAILDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 VL +R A PV LS ++D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 AVLAGIRKAGKDMPVLFLSARDHVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + + DL ++L + V G RI LT KE+ ++ELL R++ L + + + ++ Sbjct: 121 KGSSTEFLRAADLELDLLRRRVTRAGKRIDLTSKEFALLELLLRRQDEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +I+V + +LR K+ + K I TV G GYVL A Sbjct: 181 DMNFDSDTNVIEVAMRRLRAKVDDNFEPK-LIRTVRGMGYVLESPA 225 >gi|170076628|ref|YP_001733267.1| two-component response regulator; transcriptional regulatory protein [Synechococcus sp. PCC 7002] gi|169887490|gb|ACB01198.1| two-component response regulator; transcriptional regulatory protein [Synechococcus sp. PCC 7002] Length = 223 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 1/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL EDD+ LA + L+ E + + V G D + L + +D +I D + + G ++ Sbjct: 5 ILLAEDDQNLAQFVASELRLEGYLITVAHNGIDSLNLIRENTYDLLIFDWLMPGLSGLDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR + I TP+ +L+ I D+V GL +GADDY++KPF+ EEL+AR+ A +RR+R Sbjct: 65 CLRLRSSGIETPILLLTAKDEISDRVSGLNAGADDYVTKPFSIEELLARVNAHLRRARRE 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + DLS+N + V I LT KE+ ++ELL LT+E L ++ Sbjct: 125 VVDQLEFEDLSLNGITREVYRDRQLIQLTAKEFDLLELLLRHPRQVLTREQILEKVWGYD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +I+V+I LR KL A K I TV GYVL+ Sbjct: 185 FMGESNVIEVYIRALRLKLE-ATNPKRLIHTVRSVGYVLK 223 >gi|319764313|ref|YP_004128250.1| transcriptional regulator domain-containing protein [Alicycliphilus denitrificans BC] gi|317118874|gb|ADV01363.1| transcriptional regulator domain-containing protein [Alicycliphilus denitrificans BC] Length = 230 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL-TDIPGF 60 R L+IEDD A I L+++ + + + ++D ++LD L + G Sbjct: 3 RCLVIEDDLENARYIADGLRAQGHVAVIAAEPGEALRRATAEDWDVVVLDRMLGPRVDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R + TPV +LS +S+++++VRGL++G DDY+ KPF EL ARI A+VRRSR Sbjct: 63 NILQTMRGLGLRTPVLVLSALSALDERVRGLKAGGDDYLGKPFAFSELAARIEALVRRSR 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G L+ DL ++L ++ I L +E++++ L + LT+ M L ++ Sbjct: 123 AGEEARLLQMADLRLDLVSRQARRGARPIALKPREFRLLAYLMMHPEQVLTRTMLLEAVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D R +P+ +IDV + +LR+K+ A G I TV G GY L Sbjct: 183 DYRFDPQTNLIDVQVSRLRQKV-QAPGEAPLIHTVRGVGYRL 223 >gi|302525129|ref|ZP_07277471.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302434024|gb|EFL05840.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 232 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + ++ + L + + V G ++ + D ++LDLGL D+ G EV Sbjct: 9 VLVVDDEPQIVRALRINLNARGYKVITAHDGTAALKAVAETKPDVVVLDLGLPDLDGTEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR + P+ +LS DKV+ L +GADDY++KPF +EL+AR+RA VRRS Sbjct: 69 IAGLR-GWTTVPIIVLSARGDSADKVQALDAGADDYVTKPFGMDELLARLRAAVRRSSVA 127 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++++ TG +++L AK V +G +HLT E+ ++ELL + + ++ L+ + Sbjct: 128 GTDGAEAVVDTGSFTIDLAAKKVLREGREVHLTKTEWGVLELLVRNRGRLVAQKQLLHEV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E E + V++ +LR+KL ++ T G GY Sbjct: 188 WGPSYETESHYLRVYLAQLRRKLEPEPSRPRHLLTEPGMGY 228 >gi|227873346|ref|ZP_03991607.1| response regulator [Oribacterium sinus F0268] gi|227840824|gb|EEJ51193.1| response regulator [Oribacterium sinus F0268] Length = 244 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 128/241 (53%), Gaps = 24/241 (9%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD ++A + L L+ E ++ + + GE+ ++ + IILDL L I G+E Sbjct: 6 KILIVDDDSSIAELVSLYLEKECYDTRICEDGEEALKSLEKEPVALIILDLMLPGIDGYE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + P+ +LS DKV GL+ GADDY+ KPF+ +ELVAR++A++RRS+ Sbjct: 66 VCRRIRTSS-NVPIIMLSAKGETFDKVLGLELGADDYMLKPFDTKELVARVKAVLRRSQ- 123 Query: 122 HAQS--------------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161 H S I DL +NL V +G I + KE +++ L Sbjct: 124 HVFSPPLEEDKEKEGGEDLLRKGKYIAYEDLVINLSNYAVHYKGKAIDMPPKELELLYFL 183 Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + N T+E L+H++ + + +DV I +LR+KL + I TVWG GY Sbjct: 184 ASSPNQVFTREQLLDHIWGYEFAGDSRTVDVHIKRLREKLPQVEEWE--ISTVWGIGYKF 241 Query: 222 R 222 R Sbjct: 242 R 242 >gi|311739315|ref|ZP_07713151.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311305613|gb|EFQ81680.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 268 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTHTEFELLVALALRPGQVLTRHDLVT 220 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263 >gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 239 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G D + + + D +LD+ L D+ GF Sbjct: 12 KLLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELHAPDLAVLDVMLPDMDGFT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV L+ EDKV GL G DDY++KPF+ +E+VARIRA++RR++ Sbjct: 72 VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 131 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++I DL ++ DA V G I L+ E++++ L L N L+K L+H++ Sbjct: 132 LIDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I++ +I LR+K+ I+T G GYVLR K Sbjct: 192 EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVLRTAEK 238 >gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 242 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V+ G + L + E D ++LD+ L D+ GF Sbjct: 11 RLLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLARDVEPDLVVLDVMLPDMDGFT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV L+ DKV+GL G DDY++KPF+ EE+VARIRAI+RR+ Sbjct: 71 VTRRLREKGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTSA 130 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S++ DL ++ D+ V GH + L+ E++++ L L L+K L+H+ Sbjct: 131 GLDDSSSVLRYADLELDEDSHEVTRAGHAVELSPTEFKLLRYLILNPGRVLSKAQILDHV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKK---LSNAAGGK--NYIETVWGRGYVLRENA 225 + + I++ +I LR+K L++A G + I T G GY+LRE + Sbjct: 191 WQYDWGGDANIVESYISYLRRKIDQLADADGNRLPPLIHTKRGVGYLLREPS 242 >gi|295133222|ref|YP_003583898.1| two component transcriptional regulator winged helix family [Zunongwangia profunda SM-A87] gi|294981237|gb|ADF51702.1| two component transcriptional regulator, winged helix family [Zunongwangia profunda SM-A87] Length = 225 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 125/219 (57%), Gaps = 2/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ + +++ L+S ++ V+ ++GI L Y D I+LD+GL D G + Sbjct: 5 KILIIDDEPQIRKLLQINLESNDYKVFEAGTAKEGILLAARYTPDLILLDIGLPDKNGHQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR + P+ ILS + D V L +GA DY++KPF EL+ARIR+ +R S+ Sbjct: 65 VLQELR-QWFNNPILILSVQDNEADIVSALDNGATDYLTKPFRTGELLARIRSAIRNSQN 123 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ TGD+S++ A+ ++V+ H I LT EY+++ LL+ + LT L ++ Sbjct: 124 TDNNAILTTGDISIDFVARIIKVREHIIKLTSTEYELLFLLARNEGKVLTHHYLLRKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + VFI LRKK+ +I T G GY Sbjct: 184 PSFQLETQYLRVFIGNLRKKIEANPNHPKHIITESGIGY 222 >gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 244 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V V G + + D ++LD+ + + G Sbjct: 14 RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATPPDLVVLDIQMPGMDGLT 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R LR + PV +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 74 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GDL +NL + V G + LT E+ ++E+ LT+E Sbjct: 134 AVAEQAADDEETLSFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 193 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GYVLR Sbjct: 194 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 240 >gi|91790461|ref|YP_551413.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91699686|gb|ABE46515.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 239 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 132/235 (56%), Gaps = 15/235 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTD-LGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL++EDD +A + L+ + V V D + + LC FD ++LDLGL+D G Sbjct: 10 MRILVVEDDAGIAAGLRTNLQQRGYAVDVCDTVASAWMALCS-EPFDLVLLDLGLSDGDG 68 Query: 60 FEVLRALRVAKIS--------TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111 ++L+ +R K + TPV I++ + D++ GL GADDY+ KPF+ +EL AR Sbjct: 69 GDLLQRIRQVKSADGRLPDPLTPVLIMTARDQVADRISGLNLGADDYLVKPFDLDELEAR 128 Query: 112 IRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +RA++RR+ G A L+V G+L ++ A+TV G + L +E+ ++ LL + L++ Sbjct: 129 MRALLRRAAGRAHPLLVHGELVIDPAARTVLRAGQAVELAPREFTLLLLLLESRGRVLSR 188 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + LY+ D ++V + LR+KL G+ I+T+ G GY + ++ + Sbjct: 189 QQLEARLYNWEDAVGSNAVEVHVHHLRRKL-----GEGLIQTLRGVGYFIPQDDR 238 >gi|296315110|ref|ZP_06865051.1| DNA-binding response regulator [Neisseria polysaccharea ATCC 43768] gi|296838023|gb|EFH21961.1| DNA-binding response regulator [Neisseria polysaccharea ATCC 43768] Length = 224 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A ++ LK + V G +D ++LDLGL G Sbjct: 1 MRVLLVEDDAMIAEAVSANLKDGGYAVDWVKNGAQVAAAAAAQPYDLMLLDLGLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R A + PV I++ + ++ GL GADDYI KPF+ EL AR+RA++RR Sbjct: 61 DVLSEIRAAGCTVPVLIVTARDDLYSRLNGLDGGADDYIVKPFDMAELKARMRAVLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G Q + G +S+N E+ +G ++ L+ KE+ +++ L R L++ + + Sbjct: 121 GQGQVCLSNGVISLNPATYQAEIIAEGRQVALSNKEFAVLQALLARPGVILSRSDLEDKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225 Y +E E +D I LRKKL GK I+ V G G+++ R++A Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKESIQNVRGVGWLMPRQDA 223 >gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] Length = 247 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F VY G ++ + DA+ILD+ + + GF Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ + Sbjct: 82 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141 Query: 121 GHAQSLIVTGDLS-VNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G+ + V + + LD +T EV G + L+ E+ ++ + T L+K L+H Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 202 VWRYDFGGDVNVVESYVLYLRRKIDT--GEKRLLHTLRGVGYVLRE 245 >gi|119470711|ref|ZP_01613379.1| response regulator [Alteromonadales bacterium TW-7] gi|119446181|gb|EAW27459.1| response regulator [Alteromonadales bacterium TW-7] Length = 219 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD +A + L+ E ++V + + ++ E + +ILDLGL D G Sbjct: 1 MHLLLVEDDHLVAQGLCRSLRQEGYSVEHSATVKHALQCLGSGEIELVILDLGLPDGDGS 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ ++ K PV IL+ SSIEDKV+GL GA+DY++KPF EL AR+R RR Sbjct: 61 QILKHIKAQKKVIPVVILTARSSIEDKVQGLDMGAEDYLAKPFEPAELFARLRVASRRVN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SL+ G+++++ A +V + + L KEY +++ L + +K+ N LY Sbjct: 121 QAQSSLLQCGEVTMDTSAHSVTLNDGLLSLPRKEYMLLKALLENQGRVQSKQQLENKLYQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V I LRKK + ++I+T+ G GYV+ Sbjct: 181 WGEEVGSNTIEVHIHHLRKKFPS-----DFIKTLRGIGYVV 216 >gi|261340650|ref|ZP_05968508.1| DNA-binding response regulator TctD [Enterobacter cancerogenus ATCC 35316] gi|288317064|gb|EFC56002.1| DNA-binding response regulator TctD [Enterobacter cancerogenus ATCC 35316] Length = 224 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH ++ L F V + G L + + ILD+G+ G Sbjct: 1 MRLLLAEDNRELAHWLKKALVQNGFAVDCVNDGRAADHLLQGENYAVAILDIGMPGFDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ LR + PV L+ S++ D+V+GL +GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 EVVHRLRKRGQTLPVLFLTARSNVADRVKGLNAGADDYLPKPFELEELDARLRALLRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q G+L + D ++ + LT +E ++++L R+ ++++ + ++ Sbjct: 121 GRTQERQRLGELEYD-DEGFFLLRDEPLSLTPRELSLLKVLMHRRTRPVSRQQLFDQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ + ID+++ +LRKKL+ G I T+ G GYVL Sbjct: 180 LNDDVSPESIDLYVHRLRKKLT---GSGVRITTLRGLGYVL 217 >gi|298251876|ref|ZP_06975679.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297546468|gb|EFH80336.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 216 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ EDD A+ I + L+ F+ G +L + FD ++LD+ L + G+ Sbjct: 1 MKILIAEDDVAINDLIHMNLRDTGFSCTCVFDGLSAADLLERDSFDLVLLDIMLPHVNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R + PV I++ SSI DKV+GL+ GADDYI KPF EL ARI AI+RR Sbjct: 61 ELLEYIR--PLGIPVIIITARSSITDKVKGLKQGADDYIVKPFAIVELTARIEAILRRYN 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L++ DL +N +++ V + LT KEY+++ +L KN L +E ++D Sbjct: 119 KDKRMLVIE-DLEINTESRLVTKSSIPVELTLKEYELLVMLVRNKNIALFRETLFERIWD 177 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +D+ I +LR+KL G ++ I+TV+ GY L Sbjct: 178 SNVMGNTRTLDLHIQRLRRKL----GWEDKIKTVYKIGYRL 214 >gi|152981344|ref|YP_001351979.1| two-components system response regulator [Janthinobacterium sp. Marseille] gi|151281421|gb|ABR89831.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 128/233 (54%), Gaps = 5/233 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGF 60 R L+IEDD A I LK + V G +G+EL E+D IILD L + G Sbjct: 3 RCLIIEDDTHNALYIAKGLKEIGYEATVCADGIEGMELAVGGEWDVIILDRMLPQGMDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ALR TPV ILS +S+I+++VRGLQ+G +DY++KPF EL AR+ A++R ++ Sbjct: 63 SILAALREMGKRTPVLILSALSAIDERVRGLQAGCNDYLTKPFAFPELAARVEALLRWTQ 122 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + L V DL VNL ++VE G + L +E++++ + K LT+ M L + Sbjct: 123 PNEVIRELCVE-DLKVNLLTRSVERGGRPLSLQPREFRLLVYMMTHKGQVLTRTMLLESV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ + +P+ +ID I +LR K+ I T GY+L N + E + Sbjct: 182 WNYQFDPQTNVIDAHISRLRNKVDKGF-AVPLIHTRRNLGYILTPNPQTEPAD 233 >gi|160879116|ref|YP_001558084.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427782|gb|ABX41345.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 225 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 8/222 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK ++ I + LKSE++ V G + ++L K FD +ILD+ + + G E Sbjct: 5 ILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLIKENNFDLVILDIMMPKMDGLET 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 L +R + P+ L+ + D +RGL GADDYISKPF+ EL+AR++A +RR Sbjct: 65 LIHIR-KDFNMPIIFLTAKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQLRRYTIF 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I G+L ++LD V V G + LT EY+++EL KN + E +++ Sbjct: 124 NNLDNNDISIGELVLSLDMHRVTVAGKEVKLTPTEYKILELFCRNKNIVFSVEQIYENIW 183 Query: 180 DGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 RD+ V I V I KLR+K+ YI+TVWG GY Sbjct: 184 --RDKFAVGDTSIMVHITKLRQKIEKDPKNPEYIKTVWGVGY 223 >gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus] Length = 239 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 10 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 70 VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 128 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G+ + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 129 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 188 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 189 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 238 >gi|133757364|ref|YP_001096244.1| hypothetical protein pLEW279b_p02 [Corynebacterium sp. L2-79-05] gi|296119388|ref|ZP_06837951.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes DSM 20306] gi|110084139|gb|ABG49293.1| hypothetical protein [Corynebacterium sp. L2-79-05] gi|295967617|gb|EFG80879.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes DSM 20306] Length = 268 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263 >gi|311279333|ref|YP_003941564.1| two component heavy metal response transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308748528|gb|ADO48280.1| two component heavy metal response transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 230 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED K + I L NF V V G DG+ +++ ILD+ L I G+ Sbjct: 1 MRILLVEDQKMASEYIAKGLTENNFVVDVAQNGVDGLHYLLTNDYNLAILDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ R A TP+ L+ +ED+VRGL+ GA+DY+ KPF+ EL+AR R I+RR Sbjct: 61 KIIEMARQAGKQTPIMFLTARDDVEDRVRGLELGAEDYLIKPFSFSELLARARVILRRQN 120 Query: 121 G-HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 HA S ++ DL+++ V G RI LT KE+ ++ LL R L++ + Sbjct: 121 PQHAPSADENILQVADLTLDFIKHRVTRSGVRIELTQKEFLLLRLLMRRSGEVLSRTVLA 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D +PE +IDV I +LR K+ + K + T+ G GYVL Sbjct: 181 EQVWDMNFDPETNVIDVAIRRLRSKIDDGFDDK-LLHTLRGAGYVL 225 >gi|288940032|ref|YP_003442272.1| winged helix family two component transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895404|gb|ADC61240.1| two component transcriptional regulator, winged helix family [Allochromatium vinosum DSM 180] Length = 224 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDD +A + L V G +G+ + ++D +ILD L + G Sbjct: 1 MHILLVEDDPQMADYLRKALIEAGAVVDRAADGREGLLMAAGSDYDVLILDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R LR + TPV LS + ++D+V GL++G DDY+ KPF EL AR+ A++RR Sbjct: 61 AIVRTLRASGNRTPVLFLSALGDVDDRVEGLRAGGDDYLIKPFAFSELQARVEALLRRGA 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ + GDL ++L + V G I L +E++++E L +T+ M L ++ Sbjct: 121 AEAPETRLRVGDLEMDLLKREVTRAGQSIQLQPREFRLLECLMRHAGRVVTRTMLLEQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ ++TV G GY L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRGKIDKDF-DPPLLQTVRGAGYRLQ 222 >gi|217976385|ref|YP_002360532.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217501761|gb|ACK49170.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 231 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 130/231 (56%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL++EDD A+ M K+ +V D DG+E + ++D +I+D L + Sbjct: 5 MRILIVEDDSEAAN---YMAKAFREAGHVADHVGDGLEGYARAREEDYDVLIVDRMLPKL 61 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ LR K+ TPV ILS + ++D+V+GL++G DDY+SKP+ EL+AR+ + R Sbjct: 62 DGLSLIGGLRAQKVETPVLILSALGQVDDRVKGLRAGGDDYLSKPYAFAELLARVEILAR 121 Query: 118 RSRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R + +++ G L ++ A V +G I L +E++++E L +T+ M L Sbjct: 122 RKQNGTGEETVYRVGGLELDRLAHKVAREGKEIQLQPREFRLLEYLMRHAGQVVTRTMLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++D +P+ +IDV I +LR K+ ++T+ G GY++R+ ++ Sbjct: 182 ENVWDYHFDPQTNVIDVHISRLRSKIDKGF-EPPLLQTIRGAGYMIRDGSR 231 >gi|120553228|ref|YP_957579.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120323077|gb|ABM17392.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 227 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 5/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD LA+++ ML+ + V D G+ + FD ILDL L + G Sbjct: 1 MRILLTEDDHPLANTMLSMLRDDQNTVDWVDDGQQALNALLNESFDLAILDLTLPRVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R +R + P+ IL+ S + +K++GL +GADDY++KPF EL ARIRA+ RR Sbjct: 61 DIVRQVREQGVELPIIILTARSELTEKLQGLDAGADDYLTKPFAMSELKARIRAVTRRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S + G L ++ D+ ++V L E Q++ L + T+ LY Sbjct: 121 GTRVSGLKVGRLVLDPDSAQLQVGTETFVLPRSELQILHYLMRHPDQVATRRRLEEQLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 E ++V + LR++L GK I TV G GY+L A E E Sbjct: 181 WDQGAESNALEVHVHHLRRRL-----GKQAIRTVRGVGYMLDSKAASEGQE 226 >gi|312960633|ref|ZP_07775139.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311285159|gb|EFQ63734.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 233 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD AL+ I L+ ++V V G+ E + D +ILDL L + G +V Sbjct: 4 ILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNPPDLVILDLMLPGLDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RRS Sbjct: 64 CRLLRDDSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLS 123 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A I+ G+L ++L ++V + + L+ EY ++ +L+ L+++ L L Sbjct: 124 EPQVANDQIIMGNLCIDLSERSVSWREQAVELSSGEYNLLVVLARHAGEVLSRDQILQRL 183 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G D + +DV I KLR+K + AG I+TVWG+GY+ Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLF 226 >gi|264677272|ref|YP_003277178.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|262207784|gb|ACY31882.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] Length = 223 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED+ L + L V GE L + FDA +LDLGL G Sbjct: 1 MRILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGLPVRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRA R S PV IL+ ++ +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 SVLRAWRAQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA +L G ++++ V V+G + LT E++++ LL R +++ H+Y Sbjct: 121 PHASALWQCGSITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + I+VF+ +LRKKL + IETV G GY L + E Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLPPGS-----IETVRGLGYRLAAPSNQE 223 >gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 239 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V+ G + I + D ++LD+ L D+ GF Sbjct: 12 RLLVVDDEPNIRDLLATSLRFAGFEVFTASTGNEAIREATENQPDLVVLDVMLPDMDGFT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ L+ +DKV GL G DDY++KPF+ EE+VARIRA++RR+ G Sbjct: 72 VTRRLRDRGEKYPILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHG 131 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+ S +V DL ++ D+ V I L+ E++++ L L ++K L+H Sbjct: 132 GAETTVDSALVVADLRLDEDSHEVHRGDVNIELSPTEFKLLRYLMLNAGRVVSKTQILDH 191 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D EV I++ +I LR+K+ G+ I T G GYVLR Sbjct: 192 VWDYDWSGEVGIVESYISYLRRKID--VIGEPMIHTKRGIGYVLR 234 >gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 229 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 122/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL ++DD + ++ L E F V GE+ ++ + D +ILDL + + GFE Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + L+ A+ P+ ILS + D+V G + G DDY +KPF+ EL R++A++RR Sbjct: 64 TYQKLK-AQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++++ G+L+++ +TV V ++ LT K+++++ L++ N TK L+ + Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +D + + V I +LR+K+ YI+TVWG GY Sbjct: 183 WDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGY 223 >gi|228985103|ref|ZP_04145270.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229155589|ref|ZP_04283697.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228627907|gb|EEK84626.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228774590|gb|EEM22989.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 232 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKANAITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|183984426|ref|YP_001852717.1| two-component transcriptional regulator TrcR [Mycobacterium marinum M] gi|183177752|gb|ACC42862.1| two-component transcriptional regulator TrcR [Mycobacterium marinum M] Length = 254 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V + G + I D ++LD+ L D+ G Sbjct: 29 IRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDVDGL 88 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS Sbjct: 89 QILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 148 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + GDL ++ ++ V G I L+ E++++ L L++ L+ Sbjct: 149 HLAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 208 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I+D++I LRKK+ A + I TV G GY+LR Sbjct: 209 VWNYDFAGRTSIVDLYISYLRKKID--ADREPMIHTVRGIGYMLRP 252 >gi|168216104|ref|ZP_02641729.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182381612|gb|EDT79091.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 226 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++ +A IEL L E + V D G G+E+ + E D IILD+ L +I G Sbjct: 2 VKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGL 61 Query: 61 EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 EVLR R+ K+S P+ +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR +++ Sbjct: 62 EVLR--RIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I G L+++ V I LT +E+ ++++L KN LT+++ + Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYDDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +IDV++ LR K+ + K I TV G GYV+++ Sbjct: 180 KVCGYNYVGETNVIDVYVRYLRTKIDDVFKVK-IISTVRGVGYVIKD 225 >gi|167769067|ref|ZP_02441120.1| hypothetical protein ANACOL_00390 [Anaerotruncus colihominis DSM 17241] gi|167668707|gb|EDS12837.1| hypothetical protein ANACOL_00390 [Anaerotruncus colihominis DSM 17241] Length = 234 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + I LK+ ++ GE I + + I+LDLGL D+ G EV Sbjct: 6 ILVVEDDVPVRNLITTTLKAHDYRFLTAANGESAILEASSHNPEIILLDLGLPDMDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R +R + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IRKVRTWS-NLPIIVISARSEDTDKIEALDAGADDYLTKPFSVEELLARLRVTQRRLAAI 124 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +A S+ G L V+ A + G +HLT EY+++ LLS LT Sbjct: 125 QAGGMANADSVFTNGKLKVDYAAGCAYMDGQELHLTPSEYKLLCLLSKNVGKVLTHTFIA 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + ++ + VF+ LRKKL YI+T G GY Sbjct: 185 QQIWNRSWDNDIASLRVFMATLRKKLEKEPDSPQYIQTHIGVGY 228 >gi|157963744|ref|YP_001503778.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157848744|gb|ABV89243.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 227 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++DD L+ + +L+ E F + + G+ G++L +FD I+LD+ L + GFE Sbjct: 3 RILLVDDDLGLSELLAQLLELEGFKLTLAHDGQSGLDLAIEQQFDLILLDVMLPKLNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLRALR +K TPV +L+ D+V GL+ GADDY+ KPFN ELVARIRAI+RR+ Sbjct: 63 VLRALR-SKKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAIIRRTHI 121 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q++ GD+ ++ + V Q I LTG E+ ++ L +KE Sbjct: 122 QPSEAPQAIHQYGDIHLDPARQEVHCQDQLIILTGTEFSLLFELVKNAGELASKEALSEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + P + +D+ + LRKK+ G+ ++T+ G+GY+ Sbjct: 182 VLGKKLMPFDRSLDMHLSNLRKKMPERDDGRPRVKTIRGKGYI 224 >gi|118619706|ref|YP_908038.1| two component transcriptional regulator TrcR [Mycobacterium ulcerans Agy99] gi|118571816|gb|ABL06567.1| two component transcriptional regulator TrcR [Mycobacterium ulcerans Agy99] Length = 257 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V + G + I D ++LD+ L D+ G Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDVDGL 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS Sbjct: 92 QILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 151 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A +SL V GDL ++ ++ V G I L+ E++++ L L++ L+ Sbjct: 152 HLAPPADESLKV-GDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILD 210 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I+D++I LRKK+ A + I TV G GY+LR Sbjct: 211 RVWNYDFAGRTSIVDLYISYLRKKID--ADREPMIHTVRGIGYMLRP 255 >gi|126699294|ref|YP_001088191.1| two-component response regulator [Clostridium difficile 630] gi|254975324|ref|ZP_05271796.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092715|ref|ZP_05322193.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255100819|ref|ZP_05329796.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255314453|ref|ZP_05356036.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255517130|ref|ZP_05384806.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255650235|ref|ZP_05397137.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260683353|ref|YP_003214638.1| two-component response regulator [Clostridium difficile CD196] gi|260686948|ref|YP_003218081.1| two-component response regulator [Clostridium difficile R20291] gi|306520214|ref|ZP_07406561.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115250731|emb|CAJ68555.1| Two-component response regulator [Clostridium difficile] gi|260209516|emb|CBA63087.1| two-component response regulator [Clostridium difficile CD196] gi|260212964|emb|CBE04255.1| two-component response regulator [Clostridium difficile R20291] Length = 223 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K L S+ L S++F + GE+ + L +D +ILDL L +I GF Sbjct: 1 MKVLIVEDNKILLESVVEEL-SKHFETEKCEDGEEALYLVNQNIYDLVILDLMLPNINGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +RV I TPV IL+ +++DKV GA+DY++KPF EELVAR+ AI+ R+ Sbjct: 60 DILKKMRVNNIDTPVLILTAKETLDDKVEAFTIGANDYLTKPFYMEELVARVYAIL-RTN 118 Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + S+ LD K V ++ I L K++ ++E L K + L KE + + Sbjct: 119 GKIKERNGLEFKSLYLDTLEKRVYIEKEEIKLQNKQFNLLEYFVLNKGSILLKEQIYDRI 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++I++V++ LRKKLS G YI+T GY+ Sbjct: 179 WGIDSDATIEIVEVYVSNLRKKLS-KYGYDKYIKTKRKVGYIF 220 >gi|47569833|ref|ZP_00240502.1| response regulator DrrA [Bacillus cereus G9241] gi|47553479|gb|EAL11861.1| response regulator DrrA [Bacillus cereus G9241] Length = 229 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 4 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 124 DEKANAITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus lugdunensis HKU09-01] gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus lugdunensis HKU09-01] Length = 233 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +A + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|319946950|ref|ZP_08021184.1| nisin biosynthesis regulatory protein NisR [Streptococcus australis ATCC 700641] gi|319746998|gb|EFV99257.1| nisin biosynthesis regulatory protein NisR [Streptococcus australis ATCC 700641] Length = 223 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 132/225 (58%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL I+DD+ + I LK+ NF+V E+ I +C F FD I+LD+ + I G E Sbjct: 4 KILAIDDDEKILRLIGNALKANNFHVETRKYIEE-INICDFTGFDLILLDV-MMPISGLE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + ++R ++I+TP+ L+ ED ++G+Q+GADDYI+KPF+ +EL+ARI+ +RR Sbjct: 62 ICLSIR-SQIATPILFLTAKDFEEDLLKGIQAGADDYITKPFSIKELIARIQMHLRREER 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 HA + +++ N D + V Q RI LT +E+ ++ LL+ +N + E N+LY Sbjct: 121 SHHASKEEMDSNITFNRDRQEVYYQSKRISLTKREFDLLYLLAKNENRIFSIEELYNYLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ I +I ++R+K + I+TVWG GY ++N Sbjct: 181 PVDSDAQLRSITEYIYQIRQKFK--IHQIDPIKTVWGGGYKWKKN 223 >gi|183601802|ref|ZP_02963172.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241190700|ref|YP_002968094.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196106|ref|YP_002969661.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219408|gb|EDT90049.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240249092|gb|ACS46032.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250660|gb|ACS47599.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793689|gb|ADG33224.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis V9] Length = 236 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 123/230 (53%), Gaps = 11/230 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 ++++D+ ++ + L + V G + IE+ + D IILD+ L DI GF V Sbjct: 1 MVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTVT 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R +R I+ PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 61 RRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQV 120 Query: 124 Q--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 121 EDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQY 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLR 222 + I++ +I LRKK+ + G + IET G GY++R Sbjct: 181 DWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIR 230 >gi|153829425|ref|ZP_01982092.1| transcriptional regulator [Vibrio cholerae 623-39] gi|148875079|gb|EDL73214.1| transcriptional regulator [Vibrio cholerae 623-39] Length = 224 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A IE LK+E ++ G+ G+E K E D +ILD L + G Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + + +R + +LS + +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ Sbjct: 61 ALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + H + + DL + L V I LT KE ++EL + ++E L +++ Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ +LRKK+ + + I+T G GY L Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221 >gi|109897312|ref|YP_660567.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109699593|gb|ABG39513.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 235 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 129/227 (56%), Gaps = 11/227 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61 +LLI+DD+AL ++ L ++ + ++V GE G+ K + +D IILD+ L + GFE Sbjct: 6 LLLIDDDQALTELLQEYLSAQGYTIHVASDGEAGLLAAKSGQHYDLIILDVMLPKVDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL+ LR + TPV +L+ D++ GL+ GADDY++KPFN EL AR++AIVRR Sbjct: 66 VLKRLRSTHV-TPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRVDI 124 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S Q+ I GD+ +N+ A+TV ++ LTG E+ +++LL + K+ Sbjct: 125 QAGLQSDKQKQNTIEIGDVELNIAAQTVACNAQQVELTGTEFAVLKLLMSCSPDLVPKQA 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + ID+ + LRKKLS+ + + I+T G GYV Sbjct: 185 ISEQVLGRKLAAFDRSIDMHVSNLRKKLSHFS-DHDKIKTHRGVGYV 230 >gi|332666462|ref|YP_004449250.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332335276|gb|AEE52377.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 226 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ + ++L L+ ENF V T G D I + FD IILD+ L +I GF Sbjct: 1 MRILLVEDEENIRDVVKLNLELENFEVVATGNGRDAIRYFQEQHFDLIILDVMLPEIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R+ + PV L+ ++ D++ GL+ GADDY++KPF EEL+ RI +++R+ Sbjct: 61 QICEQIRLTDMEVPVIFLTAKDAVGDRISGLKRGADDYLTKPFVLEELLLRINNLIKRTS 120 Query: 121 GHAQSLIVTGDLSVN-LDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + N ++ T E +G + LT KE +++LL R+N ++++ L Sbjct: 121 KSPENTPEIFEFGSNRINFITFEAEGILGKFILTKKEAMLLKLLIDRRNEVVSRQQILQS 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ P + ID FI K R+ + + ++ G GY Sbjct: 181 VWGYDVYPSTRTIDNFILKFRRNFEGDSKNPRHFHSIRGVGY 222 >gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166] Length = 219 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+AL I LK E + V G + F+ +ILDLGL + G Sbjct: 1 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR A PV +L+ + D++ GL +GADDY+ KPF+ EL AR+RA++RRS Sbjct: 61 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ + ++ + V QG I+L KE+ ++ L + LT++ LY Sbjct: 121 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E ++V I LRKK I TV G GY++ Sbjct: 181 WDEDVESNALEVHIHHLRKKFF-----PELIRTVRGVGYLV 216 >gi|289704826|ref|ZP_06501244.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558442|gb|EFD51715.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 276 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K LA + L+ + V +T G ++ + +E D ++LDLGL + G E Sbjct: 54 RVLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIE 113 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R A V +L+ ++ GL GADDYI+KPF+ ELVAR+ A++RR R Sbjct: 114 VCRRVR-AFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRT 172 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V GDL ++L A V G + LT E+ ++ LS R + ++ ++ + Sbjct: 173 TVSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIV 232 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D + +++DV I LR+KL A YI+TV G GY + E Sbjct: 233 WDPAWVGDERLVDVHIKNLRRKLD--ADPARYIDTVRGVGYRMAEQ 276 >gi|289643785|ref|ZP_06475893.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506391|gb|EFD27382.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 242 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D++A+ + + L+ E F+V+ G+ + D ++LD+ L DI GF Sbjct: 18 LKVLVVDDEEAITDLVVMALRYEGFDVHAVHSGQAALTRVALSPPDLLVLDVMLPDIDGF 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + P L+ + EDKV GL G DDY++KPF ELVAR+RAI+RR+ Sbjct: 78 MLCQRLRGSGRGMPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELVARVRAILRRA- 136 Query: 121 GHAQSLIVTGDL---SVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A S G L + LD +T EV+ G + LT EY+++ L LT+ L Sbjct: 137 GAADS--TPGPLRFSDLELDPETREVRRGGRHVELTATEYRLLHYLLANARKVLTRAQLL 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +H++ E ++++ ++ LR+K+ + I TV G GYVLR Sbjct: 195 DHVWGHDFGGEARVLETYVSYLRRKIDPVP--PSLIHTVRGVGYVLR 239 >gi|262369887|ref|ZP_06063214.1| response regulator [Acinetobacter johnsonii SH046] gi|262374252|ref|ZP_06067528.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262310810|gb|EEY91898.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262314926|gb|EEY95966.1| response regulator [Acinetobacter johnsonii SH046] Length = 237 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 125/218 (57%), Gaps = 3/218 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ + +++ L+++ + + + G+ G+EL D +ILDLGL D+ G+EV Sbjct: 14 VLIIDDENQIRKFLDIALRAQGYKTLLAENGQKGLELLALQGADLVILDLGLPDLDGYEV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR PV +LS ++ E+KV+ L +GA+DY++KPF+ +ELVARIR ++R+ + Sbjct: 74 LSELRTWS-HVPVIVLSVRANEEEKVKLLDAGANDYVTKPFSVQELVARIRVLLRQHQHS 132 Query: 123 AQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ D L ++ + V + + LT KEYQ++ LL+ K +T+ L L+ Sbjct: 133 TVDTVIFDDGVLKIDFSKRQVFLNQQLLSLTRKEYQLLNLLAKNKGQLITQPQILKELWG 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218 + + + + + KLR KL++ A YI T G G Sbjct: 193 PTHQEDTHYLRILVAKLRVKLNDNAVQPKYIITEPGVG 230 >gi|227502288|ref|ZP_03932337.1| response regulator [Corynebacterium accolens ATCC 49725] gi|227076978|gb|EEI14941.1| response regulator [Corynebacterium accolens ATCC 49725] Length = 268 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 102 VCRRIRTFSDCY-ILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263 >gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1] gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1] Length = 223 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 126/224 (56%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K + + L S + V+ G + I++ K D ++LD+ + + G Sbjct: 1 MNILVVDDEKDMVGLLNSYLTSNGYYVFPAGNGREAIDVMKSESIDLVLLDIMMPFMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E + +R P+ +L+ + +D+V GL+ GADDY+ KPF+ +EL+ARI A +RRS+ Sbjct: 61 EAAQEIRTFS-DVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRSK 119 Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+ +I +L+V+L V+V G ++LT KE+ ++ LL + ++E L Sbjct: 120 GYKNGNLTSQMISHEELTVDLKGHMVQVDGITVNLTRKEFLLLALLMQNQGQVFSREQLL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ E + +D I LR KL AAG +Y++TVWG GY Sbjct: 180 DQIWGFESEGTARTVDTHIKTLRLKLK-AAG--SYVQTVWGVGY 220 >gi|297201268|ref|ZP_06918665.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197712870|gb|EDY56904.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 228 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 12/226 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ +A S+ L F V G L +D ++LDLGL D G Sbjct: 1 MRVLLVEDDEPVAQSLRRGLIRYGFEVEWVSTG--AAALGHEGPYDVVLLDLGLPDTDGL 58 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V RALR + P+ ++S S D+V GL+ GADDY++KPF E++ARIRA++RR++ Sbjct: 59 DVCRALR-ERGDVPIIVISARSDETDRVVGLELGADDYVTKPFGVREVIARIRAVMRRAQ 117 Query: 121 GHAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + D LS++ A V + G + L KEY ++ L+ +++E + Sbjct: 118 PRTEVAAAGPDTYGSRLSIDRKAARVRLDGEEVPLAPKEYDLLAFLTEEPGALMSREQIM 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D K +DV + LR+KL+ A IE V G G+ L Sbjct: 178 EAVWDANWFGPTKTLDVHVAALRRKLAGAV----VIEAVRGVGFRL 219 >gi|308069282|ref|YP_003870887.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305858561|gb|ADM70349.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 232 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 ++L++ED++++ I + LK F V G + + L + D +LD+ + + GF Sbjct: 3 KVLIMEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + L+ +DKV L GADD++SKPF+ EL+ARI++++RR Sbjct: 63 EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVN 122 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H A+ +G +++L AK + G I LT E+ +I+ ++NT L++++ L+ Sbjct: 123 VHRETAAKVSFQSGPFTLDLIAKQFKKNGQLIELTPTEFSLIQFFLEKENTPLSRDVLLD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 H++ + KI+DV I +LR+K+ N +++TVWG GY Sbjct: 183 HVWGKEYMGDPKIVDVNIRRLRQKIENNPSEPAFLQTVWGHGY 225 >gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 231 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ + LK E F V D GE+ + L +D +LD+ L + G+E Sbjct: 7 RILVVDDEPSITEFVSYALKKEGFYTDVVDNGEEALALATKNPYDLFVLDIMLPGMDGYE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR +K + PV LS + DKV GL+ G DDY++KPF EL+AR+RA++RR G Sbjct: 67 LCRRLR-SKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A I ++++ DA T + I LT +E++++ L +++E L Sbjct: 126 GDFPGANHAITASGITLDEDAHTASGEHGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E K +D I +LR K+ A +ETV G GY R+ Sbjct: 186 AWGWEYLTETKTVDTHIKRLRDKIEGAGYDPGLVETVRGYGYRFRQ 231 >gi|284036763|ref|YP_003386693.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283816056|gb|ADB37894.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 228 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD+ +A +I L+ ++ V G G L +++ IILD+ L DI G+E Sbjct: 3 RILIIEDDRRIAQNISRSLRVLGYSTEVAYDGFTGRALGLTGQYELIILDINLPDISGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R +R + P+ +L+ M IEDK+ GL+ GADDYI KPF+ EL AR+ RRS Sbjct: 63 ICRNIRADHPTLPIIMLTAMGEIEDKIEGLECGADDYIVKPFDLRELSARVATCFRRSDL 122 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ DL++N+ +K V I LT KE+ ++E L + ++K Sbjct: 123 LISSTGEEMLQVADLTLNVTSKVVMRDNTFIELTAKEFALLEYLMRHQGRVVSKIDLAEK 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ +P +++V+I LRKK+ K I T G GY L+ + Sbjct: 183 VWNFNFDPGTNVVEVYINYLRKKIDKEFDVK-LIHTRPGLGYTLKAD 228 >gi|170720861|ref|YP_001748549.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|169758864|gb|ACA72180.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 226 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED + L F + GE G L + D +ILD+ L G+ Sbjct: 1 MKLLIVEDQARTGQYLSQGLSEAGFATELVADGETGQHLALSGDHDLLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A+R A + TPV L+ ++ED+VRGL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 QILQAVRQAGLDTPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGA 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q + + DL ++L + E G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 SPSQETQLALADLRLDLFRRRAERAGQRIDLTAKEFALLELLLRRQGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + + +I+V I +LR K+ + K I TV G GYVL E Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDPHRNK-LIHTVRGMGYVLEER 224 >gi|104782036|ref|YP_608534.1| response regulator [Pseudomonas entomophila L48] gi|95111023|emb|CAK15743.1| putative response regulator [Pseudomonas entomophila L48] Length = 233 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 12/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD AL+ I L+ +F+V V G+ ++ + + D +ILDL L + G +V Sbjct: 4 ILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLDEFRRQKPDLVILDLMLPGLDGLQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +L+ D+V GL+ GADDY++KP L+AR+R ++RRS + Sbjct: 64 CRLLRQETQCLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 123 Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 LI G L ++L ++V +G + L+ EY ++ +L+ ++++ L L Sbjct: 124 EPRLDSDLIQVGGLRIDLAERSVSWRGEEVELSSGEYNLLVVLARNAGEVMSRDRILQQL 183 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++G D + +DV I KLR++ + AG I+TVWG+GY+ Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRRFDDNAGEARKIKTVWGKGYLF 226 >gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 239 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 130/233 (55%), Gaps = 10/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ L+ + L E F V V + G G E +E+D I+LD+ L + GF++ Sbjct: 1 MLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKAANHEYDLILLDVMLPGMNGFQI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR + I+TP+ IL+ ++ E+ V+GL+ GADDYI+KPF EL+AR+ A++RR GH Sbjct: 61 LEKLRGSGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSGH 120 Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++I G L + + V + G I+L KE++++ L+ + LT++ Sbjct: 121 VEEVKTPDQQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRDD 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +N ++ + +DV + LRKKL +I+++ G GY L N K Sbjct: 181 LMNVVWGFDYIGGQRTVDVHVSSLRKKLE-LDPESVHIDSIRGVGYKLVVNPK 232 >gi|299530817|ref|ZP_07044232.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|298721333|gb|EFI62275.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 223 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED+ L + L V GE L + FDA +LDLGL G Sbjct: 1 MRILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGLPVRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRA R S PV IL+ ++ +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 SVLRAWRTQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA +L G ++++ V V+G + LT E++++ LL R +++ H+Y Sbjct: 121 PHASALWQCGSITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + I+VF+ +LRKKL + IETV G GY L + E Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLPAGS-----IETVRGLGYRLAAPSNQE 223 >gi|295108867|emb|CBL22820.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 233 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + + I LK+ ++ + G I + D ++LDLGL DI G EV Sbjct: 6 ILVVEDDRPIRNLIITALKTHDYKYLEAENGTSAILEASSHNPDIVLLDLGLPDIEGVEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ +R+ + P+ ++S + DK+ L +GADDYI+KPF+ EEL+ARIR RR Sbjct: 66 IKKIRMWS-NMPIIVISARNEDMDKIEALDAGADDYITKPFSVEELLARIRVTQRRLALI 124 Query: 119 SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G Q S+ G+L ++ A ++G +HLT EY+++ LLS LT Sbjct: 125 QTGEMQEESIFTNGELKIDYTAGCTYLRGEELHLTPIEYKLLCLLSRNVGKVLTHTFITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +V + VF+ LRKKL +YI+T G GY Sbjct: 185 QIWRRSSENDVASLRVFMATLRKKLETEKSDVSYIQTHVGIGY 227 >gi|154495761|ref|ZP_02034457.1| hypothetical protein BACCAP_00040 [Bacteroides capillosus ATCC 29799] gi|150274959|gb|EDN02007.1| hypothetical protein BACCAP_00040 [Bacteroides capillosus ATCC 29799] Length = 248 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 127/228 (55%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL++EDD L ++E+ LK + GEDG+ +D I+LD L + G Sbjct: 24 LHILMVEDDADLCGAVEIHLKKAGHTADMAYDGEDGLHFALQNAYDLILLDRMLPGMDGL 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ LR A I+ PV +++ + + D+V GL +GADDY++KPF EEL+ARIRA+ RR Sbjct: 84 ELVSRLRKAGITAPVLMVTALDGVSDRVDGLDAGADDYLTKPFAAEELLARIRALSRRPV 143 Query: 121 GHAQSLIVTGDLSVNLDAK--TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 QS ++ + LD K T++ G L+ +E +++E+ T+T+E+ L + Sbjct: 144 QWEQSSALS-RWGLELDVKLCTLQGPGGSCSLSKRESRLLEIFLRNAGQTMTRELLLARV 202 Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + G D P E +D +I LR++LS A G I T G GY L E A Sbjct: 203 W-GPDAPVEEGNLDNYIHFLRRRLS-AVGSGARIVTARGVGYRLEEGA 248 >gi|332975039|gb|EGK11946.1| two component response regulator [Psychrobacter sp. 1501(2011)] Length = 227 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 128/233 (54%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNV-YVTD--LGEDGIELCKFYEFDAIILDLGLTDIP 58 R+LLIEDD +A + L LK+ V + +D LGE ++ F DA++LDL L + Sbjct: 3 RVLLIEDDSTIAEGLILGLKNHGIMVDWFSDAKLGELALQESMF---DAVLLDLTLPNGD 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G VL++ R KI TPV I++ +I ++V GL +GADDY+ KPF +E++AR++A++RR Sbjct: 60 GMSVLKSWRDKKIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVIARLQALMRR 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+G I G+L ++ V QG I LT KE ++E + + + + L Sbjct: 120 SQGRIYPEIRFGELVYYPHSQQVTYQGQSIDLTTKEVAILEQMMTQPQKIHNRASLEDKL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 Y + + E I+V I LRKKL N ++I T G GY L + + + Sbjct: 180 YGWQQDIESNAIEVHIHHLRKKLGN-----DFILTKRGIGYYLNPSYQHSPAQ 227 >gi|126732451|ref|ZP_01748250.1| two-component system regulatory protein [Sagittula stellata E-37] gi|126707090|gb|EBA06157.1| two-component system regulatory protein [Sagittula stellata E-37] Length = 233 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED +A +I V + ED + ++D IILD+GL D G Sbjct: 11 MRLLLVEDTADVADAIVASFGHRGDAVDHVNSVEDALGALAVQDYDVIILDIGLPDGLGT 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +LR TPV +L+ S+IED+V L GADDY+ KPF+ EL AR+RA++RR Sbjct: 71 DILSSLRSRGTPTPVMMLTARSNIEDRVAALDKGADDYLIKPFDLRELHARVRAMLRRQD 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I GD++ + TVEV+G + L +E+ ++E+L + + K+ L +Y Sbjct: 131 VDRSGVIEFGDITFDPAGLTVEVKGRPVALVRREFNVLEILLANRERVVPKDKLLERMYA 190 Query: 181 GRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE +++++ +LRKKL N+ + I+T+ G GY L Sbjct: 191 FNDEDVSPNAVELYVGRLRKKLCNS---QITIKTLRGLGYQL 229 >gi|116621283|ref|YP_823439.1| two component heavy metal response transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224445|gb|ABJ83154.1| two component heavy metal response transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 238 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K +A + L+ + V G ++L ++D ++LD L D+ G Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R K PV ILS +++D+V+GL+ GADDY+ KPF EL+AR+RA++RR + Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L V+ DL+++ + V I L KE+ ++E + K L++ M + H++D Sbjct: 121 PTPERLQVS-DLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + I+DV+I LR K+ + K I+TV G GY++ K Sbjct: 180 MDYDGLTNIVDVYIRHLRSKIDDRFQQK-LIQTVRGIGYMIEAPDK 224 >gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590] gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590] Length = 238 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 9 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 69 VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 127 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +A + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 128 QPAQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 188 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 237 >gi|227536801|ref|ZP_03966850.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227243357|gb|EEI93372.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 224 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ LA SI L + + + E +++D I+LD+ L D G Sbjct: 1 MKILIIEDEYELAKSIADYLGQQGYLCEFASTFQMAQEKIAGFDYDCILLDIMLPDGNGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ L+ + V I+S +++DK++GLQ GADDY++KPF+ ELVARI A++RR + Sbjct: 61 HVLQTLKEQEKQDGVIIISAKDALDDKIKGLQIGADDYLTKPFHLSELVARIYAVIRRKQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178 ++I+ +L ++L AKTV V H + T KE ++ KN ++K HL Sbjct: 121 FQNSNIIIQNELQIDLLAKTVSVGDHVVPFTKKELDLLLYFIGNKNKVISKSTLAEHLSG 180 Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D D + + I L+KKL +A G +Y++T++G GY Sbjct: 181 DVADMLDNHD--FVYAHIKNLKKKLQDAHSG-SYLKTIYGSGY 220 >gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 241 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++D+ + + L+ F+V G + +E E D ++LD+ L D+ GF Sbjct: 13 RLVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVMLPDMDGFT 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + TPV L+ + D V GL G DDY++KPF+ EE+VARIRA++RRS+ Sbjct: 73 VTRRLRERGVRTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRRSQA 132 Query: 122 H-AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H A S ++ DL ++ DA+ V G + L+ E++++ L L L+K L+H++ Sbjct: 133 HDADSGVLRYADLELDEDAREVRRAGRPVELSPTEFKLLRYLMLNAGRVLSKTQILDHVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKL----SNAAGGKNYIETVWGRGYVLR 222 + E I++ +I LR+K+ + A I T G GYVL+ Sbjct: 193 EYDWRGESAIVESYISYLRRKIDVPGPDGAPTVPLIHTRRGIGYVLK 239 >gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 239 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 8/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++I+D + + L+ E ++V + E ++ K + D I+D+ L ++ GFE Sbjct: 6 IMIIDDQPEILELVSFTLQKEGYDVIPAEDAEKALQELKEKDVDMFIVDIMLPNMDGFEF 65 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +R +R TPV LS DKV GL+ GADDYI KPF+ EL+ARIRA+ RR Sbjct: 66 VRTIRAKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAVFRRMQ 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + IV DL +++D V V+G ++ LT E+ ++ L+ + ++++ Sbjct: 126 LGTVVKEEKPKKIVAKDLEIDIDKYEVRVKGKKVSLTPLEFDLLRFLAENEGKVFSRDVL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ + Y+ TV G+GY R+ K+E Sbjct: 186 LDKLWGYDYFGDTRTVDVHIRRLRTKIEDDPSNPRYVVTVRGKGYKFRDPGKEE 239 >gi|113970165|ref|YP_733958.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114047645|ref|YP_738195.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113884849|gb|ABI38901.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113889087|gb|ABI43138.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 219 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI+L+ED++ LA I L L V + + K F AI+LDLGL D G Sbjct: 1 MRIMLVEDNELLAQGICLSLAKLGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+A R +S P +L+ + + K+ L GADDY+ KPF+ EL ARIRAIVRR Sbjct: 61 ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G LS++L+ + V + + L+ +E+Q++ L+ LT+ L L Sbjct: 121 GLDNNSLNIGALSIDLNTREVTFRDQNVPLSRREFQLLLELAQSAGRVLTRSQ-LEQLTY 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DE I+V I LRKK++N I+TV G GY L E Sbjct: 180 GWDEVGSNSIEVHIHHLRKKMAN-----ELIKTVRGIGYTLTE 217 >gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 231 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 130/229 (56%), Gaps = 5/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + ++ L+ ++ GE+G+++ + D I+LD+ L + GF Sbjct: 3 RILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMAQEKNPDLILLDVMLPKMDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR ++TP+ +L+ DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 63 VLRILR-QTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 121 Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G S +++ L+++L VE G I LT +E+ +++ L + ++EM L Sbjct: 122 SNGETMSNVLSVNSLNIDLSKYRVEKNGKPIELTSREFDLLKFLVANRGLIFSREMLLEK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ +V+ +DV I +LR+K+ + YI T G GY E ++ Sbjct: 182 VWGYEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYFSEESE 230 >gi|161614534|ref|YP_001588499.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|238910949|ref|ZP_04654786.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161363898|gb|ABX67666.1| hypothetical protein SPAB_02283 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|322616607|gb|EFY13516.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619878|gb|EFY16752.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622446|gb|EFY19291.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629436|gb|EFY26213.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632932|gb|EFY29675.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636823|gb|EFY33526.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641377|gb|EFY38016.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645142|gb|EFY41671.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652305|gb|EFY48661.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655657|gb|EFY51959.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660962|gb|EFY57192.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665452|gb|EFY61640.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667571|gb|EFY63732.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322677561|gb|EFY73625.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679774|gb|EFY75813.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|323193061|gb|EFZ78283.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199442|gb|EFZ84535.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203630|gb|EFZ88652.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208829|gb|EFZ93767.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209871|gb|EFZ94787.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217803|gb|EGA02518.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323226634|gb|EGA10834.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229606|gb|EGA13729.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232831|gb|EGA16927.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240133|gb|EGA24177.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323254304|gb|EGA38121.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255570|gb|EGA39329.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323267000|gb|EGA50485.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272104|gb|EGA55518.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 223 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 220 >gi|119715849|ref|YP_922814.1| response regulator receiver [Nocardioides sp. JS614] gi|119536510|gb|ABL81127.1| response regulator receiver [Nocardioides sp. JS614] Length = 225 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA ++ L++E F V G +G+ + ++D I+LD+ L + G+ Sbjct: 1 MRVLMVEDEVRLAETVSRGLRAEGFVVDTIHDGAEGLAEAQLRDYDVIVLDIMLPSMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR A + P+ +L+ D+ L GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 DVCRELRKAGVWVPILMLTAKDGEYDEADALDLGADDYLTKPFSFVVLVARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ GDL+++ + V G I LT +E+ ++ L L+K + ++D Sbjct: 121 PKRPSVLTVGDLTLDPATRMVGRGGTEIALTPREFALLHFLMRHPGEVLSKTAIVQSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V++ LR+K+ G I+T+ G GY L Sbjct: 181 LNYDGDENVVEVYVGYLRRKIDQPF-GTTTIQTMRGAGYRL 220 >gi|160941449|ref|ZP_02088785.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC BAA-613] gi|158435659|gb|EDP13426.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC BAA-613] Length = 229 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++++A + L+ F V + + G G++ ++D +ILDL L GFE Sbjct: 3 KILIVEDEESIAELEKDYLELSGFEVEIENDGSSGLDKALKEDYDLLILDLMLPGTDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICKRVREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S A LI L ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGSGQPANELIEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|330818213|ref|YP_004361918.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327370606|gb|AEA61962.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 225 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ LAH + + L + F + GE + + +D ++LDL L + G Sbjct: 1 MRLLLVEDNEELAHWLAMTLTDDGFMLDRVSSGEAAEDALRASAYDVVLLDLNLPGMSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R +TPV IL+ ++++KV L +GADDYI KPF+ ELVARI+ + RR Sbjct: 61 TVLRRMRERGDATPVLILTATGAVDEKVVCLGAGADDYIVKPFDARELVARIKVLARRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G+L ++D V + LT +E+ ++E L LR T++K + Sbjct: 121 PSRSNRLRCGNLVYDMDRLQFAVDDVPLVLTPREHAVLEALILRAKKTVSKTTLAESVSA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 I++++ +LRKKL ++ I T+ G GY+L + A DE Sbjct: 181 ADAPTSEDAIEIYVSRLRKKLEASSA---TIITLRGLGYLLEDGAADE 225 >gi|58580728|ref|YP_199744.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425322|gb|AAW74359.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 297 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA +I ++ V G + ++ FD ++LD+GL + G Sbjct: 65 MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 124 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++RR+R Sbjct: 125 RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 184 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G + A T+ + G I L +EY++ ++L R + K+ N L+ Sbjct: 185 GQASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG 244 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ I++++ +LR+KL+ A I TV G GY L E Sbjct: 245 FDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 284 >gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 226 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + +L E F V V D G D I D ++LDL L G E Sbjct: 3 RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + S PV +L+ + DKV GL+ GADDY++KP++ ELVAR+RA++RR +G Sbjct: 63 VCRQLR-QRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR-QG 120 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + LI G + ++++ V V G ++ L KE++++E+L LT+ ++ Sbjct: 121 EPEELITNTVQAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ Y+ TV G GY Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGY 222 >gi|167627448|ref|YP_001677948.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597449|gb|ABZ87447.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 229 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 131/225 (58%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +DDK +A I+ + + G++ + L +D +++D + + G Sbjct: 6 KVLVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPYLDGIS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L+ LR ++ PV ILS + S E+K++GL SG+DDY++KPF+ +EL+ R+ + +R++ Sbjct: 66 LLKILRKQNVTIPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELIVRVNILYKRTKQ 125 Query: 121 -GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 AQS ++ GD+ ++ A V I L +EY+++ LL KN ++K M L + Sbjct: 126 IAEAQSHKLICGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D +P+ +++V I +LR KL+ G + I+T+ G GYV++E Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLT-ENGLPDPIKTIRGFGYVIQE 229 >gi|16764586|ref|NP_460201.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56413783|ref|YP_150858.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168239138|ref|ZP_02664196.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194444063|ref|YP_002040487.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448565|ref|YP_002045233.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471531|ref|ZP_03077515.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736162|ref|YP_002114238.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195874180|ref|ZP_02701035.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197251572|ref|YP_002146810.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261891|ref|ZP_03161965.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362706|ref|YP_002142343.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244282|ref|YP_002215904.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390596|ref|ZP_03217207.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930765|ref|ZP_03221638.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205357417|ref|ZP_02347547.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205357746|ref|ZP_02573078.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205358670|ref|ZP_02658171.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205359350|ref|ZP_02669237.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205360059|ref|ZP_02834338.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205360758|ref|ZP_02686229.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|207857262|ref|YP_002243913.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584261|ref|YP_002638059.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|130127|sp|P14146|PHOP_SALTY RecName: Full=Virulence transcriptional regulatory protein phoP gi|73621400|sp|Q5PMJ1|PHOP_SALPA RecName: Full=Virulence transcriptional regulatory protein phoP gi|154264|gb|AAA27187.1| PhoP protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|154266|gb|AAA27188.1| phoP protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|7007369|emb|CAB75591.1| PhoP protein [Salmonella typhimurium] gi|16419749|gb|AAL20160.1| response regulator in two-component regulatory system with PhoQ [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128040|gb|AAV77546.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194402726|gb|ACF62948.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406869|gb|ACF67088.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457895|gb|EDX46734.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711664|gb|ACF90885.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630373|gb|EDX48999.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094183|emb|CAR59687.1| transcriptional regulatory protein PhoP,regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197215275|gb|ACH52672.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240146|gb|EDY22766.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288154|gb|EDY27541.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938798|gb|ACH76131.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603041|gb|EDZ01587.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320224|gb|EDZ05428.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205321841|gb|EDZ09680.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329802|gb|EDZ16566.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332740|gb|EDZ19504.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336749|gb|EDZ23513.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341203|gb|EDZ27967.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347225|gb|EDZ33856.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709065|emb|CAR33398.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|219523857|gb|ACL14891.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica] gi|219523864|gb|ACL14894.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica] gi|219523866|gb|ACL14895.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|219523868|gb|ACL14896.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica] gi|224468788|gb|ACN46618.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246443|emb|CBG24253.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993010|gb|ACY87895.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157772|emb|CBW17265.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912219|dbj|BAJ36193.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086328|emb|CBY96101.1| Response regulator mprA Mycobacterial persistence regulator A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223849|gb|EFX48912.1| Transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322673635|gb|EFY69737.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322687247|gb|EFY83219.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323129501|gb|ADX16931.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323218886|gb|EGA03397.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323242880|gb|EGA26901.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246796|gb|EGA30766.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323259404|gb|EGA43040.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|326623652|gb|EGE29997.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332988122|gb|AEF07105.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 2 MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 59 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 221 >gi|302544907|ref|ZP_07297249.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462525|gb|EFL25618.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFREAKPDLVLLDLMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSED 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PTPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220 >gi|332715573|ref|YP_004443039.1| two component response regulator [Agrobacterium sp. H13-3] gi|325062258|gb|ADY65948.1| two component response regulator [Agrobacterium sp. H13-3] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED+K +A ++ L + + T D +EL + + +DAI+LD L D G Sbjct: 1 MRLLLIEDEKEMADALSTTLGKQGIVIDHTMRLGDAMELARQHVYDAILLDRRLPDGEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR A I TP+ +L+ M+ E+++ GL GADDY+ KPF EL+AR+RA++RR Sbjct: 61 TFIPKLRRAGIDTPIILLTAMNEPEERIEGLNGGADDYLGKPFLVGELLARLRAVLRRPA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S I G + ++ +V + L +E ++ L+ RK ++ + +Y+ Sbjct: 121 SIAPSQIAAGRIVIDPLHLSVTINSLPFDLPRRELMVLITLAKRKGKSVLRSTLEAAVYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E + +D I +LRK+L +A+ G + + + G GY+LRE+ Sbjct: 181 YEEEIQSNALDAHISRLRKRLLDASAGVS-VHNIRGIGYLLRED 223 >gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 231 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 124/220 (56%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DD + ++ L E F+ ++ + E G+++ + + D +ILD+ L D G+E Sbjct: 5 KVLIIDDDPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKVDILILDIMLPDEDGWE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ LS DK+ GL+ GADDYI+KPF+ E+VARI+A++RR Sbjct: 65 FCQKIR-PEYDLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLRRYNK 123 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A++ +I G+L +N + V QG +I LT KE+ ++ L+ +E L ++ Sbjct: 124 AAENAKIIKYGELIINREQHLVSFQGEKIELTPKEFSLLWHLAENPKKVFRRERLLKAVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +V+ +D I LRKKL + A +ETVWG GY Sbjct: 184 GYDYYGDVRTVDTHIKSLRKKLGDKAA--EAVETVWGVGY 221 >gi|260460551|ref|ZP_05808802.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259033656|gb|EEW34916.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 230 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D+ + + + L S+ + + + IEL + + D ++LDLGL + G Sbjct: 6 VRILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMETEKPDLVLLDLGLPGMSGH 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+LR R + PV ILS + V L+ GADDY++KPF ELVARIR +R Sbjct: 66 ELLRKWRDDGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKF 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + TGDLSV+L + V+V+G + L+ KEY+++ +L LT L + Sbjct: 126 QQQGEKPVFQTGDLSVDLVKRVVKVEGKEVKLSPKEYEILRMLVQHAGKVLTHHFLLKQV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + D +V+ + V++ +LR+K+ YI T G GY LRE Sbjct: 186 WG--DSTDVQYLRVYVRQLRQKIEKTPDQPRYITTETGVGYRLRE 228 >gi|50954325|ref|YP_061613.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950807|gb|AAT88508.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 227 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E F+ + G + + + + + D ++LDL L + G E Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGFDPVFCEDGSEAVGIFRESKPDLVLLDLMLPGLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V ++R A+ TP+ +L+ S D V+GL+SGADDY+ KPFN +ELVARIR +R + Sbjct: 64 VCSSIR-AESGTPIIMLTAKSDTADVVKGLESGADDYMVKPFNPKELVARIRTRLRPAPV 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ L + GDL V++ V RI LT E+ ++ L+ + T+EM L ++ Sbjct: 123 APPAEQLCI-GDLLVDVAGHEVRRGEARIALTPLEFDLLLALAAKPQQVFTREMLLEQVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++++V + +LR K+ + TV G GY Sbjct: 182 GYHYKADTRLVNVHVQRLRAKVERDPDNPKIVMTVRGVGY 221 >gi|76788510|ref|YP_330411.1| DNA-binding response regulator DltR [Streptococcus agalactiae A909] gi|76563567|gb|ABA46151.1| DNA-binding response regulator DltR [Streptococcus agalactiae A909] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K++A +I+ +L + ++V + G+DG+E +D ++LD+ L G Sbjct: 1 MRLLVVEDEKSIAEAIQALLADKGYSVDLVFDGDDGLEYILTGLYDLVLLDIMLPKRSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R A + TP+ L+ S DKV GL GADDYI+KPF +EL+ARIR R+S Sbjct: 61 SILKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G++ +N D+ +E + + L+ KE+ ++E+ + K ++ ++ Sbjct: 121 LIRANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D E ++VFI LRKKL I T G GY L E Sbjct: 181 PSDNSEYNQLEVFISFLRKKLRFLKADIEII-TTKGFGYSLEE 222 >gi|238785583|ref|ZP_04629563.1| Two-component system response regulator [Yersinia bercovieri ATCC 43970] gi|238713518|gb|EEQ05550.1| Two-component system response regulator [Yersinia bercovieri ATCC 43970] Length = 227 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + L E FN + G++GI+ ++ A+ILD+ L D+ G Sbjct: 1 MKILLVDDDVELGTMLREYLSGEGFNAELVLTGKEGIDGALSGDYTALILDIMLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R K P+ +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 61 DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119 Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H S+I GDL++N ++ E QG LT E+ ++ELL + +TK+ Sbjct: 120 EHPDLSSTDDSVITHGDLTLNPSTRSSEWQGKTFDLTASEFNLLELLLRSPDRVVTKDEL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + +DV I +R+KL+ G IETV GY +R Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNTLNIETVRSIGYRIR 227 >gi|229824657|ref|ZP_04450726.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271] gi|229786028|gb|EEP22142.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271] Length = 232 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 122/228 (53%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MRIL+ +DD+ + + + L +E ++V G + K +E IILD+ + + Sbjct: 1 MRILVADDDREIVELLNIYLHNEGYDVIKAYNGHQALSYIKNDVDHEIGLIILDIMMPKV 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VL LR A TPV +LS SS +DK++GL SGADDY++KPFN E++AR+++I+R Sbjct: 61 DGMQVLDKLRAANYETPVLMLSAKSSDQDKIQGLTSGADDYVTKPFNPLEIIARVKSILR 120 Query: 118 RSRGHAQS-----LIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTK 171 R + + +I G L + + V+ + I LT E+ ++ LL+ N + Sbjct: 121 RQSTYQKEVAEPDVIEIGPLIIRRASHEVKTLTDKDIQLTALEFGILYLLASHPNQVFSA 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E +++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 181 EEIFEAVWNQESIVSAKTVMVHVSHLRDKIEAATEGERVIQTVWGVGY 228 >gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676] gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676] Length = 231 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ ++ YE D +ILD+ + + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKLNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RR Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ + +I + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGY 227 >gi|169829139|ref|YP_001699297.1| KDP operon transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168993627|gb|ACA41167.1| KDP operon transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 234 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 6/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD A+A+ I++ L ++++ + G ++ + D ILDLGL DI G E Sbjct: 4 RILVVEDDVAIANLIKMTLATQHYEFDIAQDGNSALQKAITMKPDVYILDLGLPDIDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 ++ +R + TP+ ++S DK+ L +GADDY++KPF+ EEL+ARIR +RR+ Sbjct: 64 LITKIR-SWTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVALRRAAY 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G L +N +TV V G IH+T EY+++ +LS LT L Sbjct: 123 EYPPEQENATFTNGYLQINYVDQTVLVNGKEIHVTPIEYKLLVVLSKHVGKVLTHNFILK 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + ++ + VF+ LRKK+ + I+T GY + +DE Sbjct: 183 EIWHNALQSDIPSLRVFMATLRKKIEDDPAQPKLIQTHVRVGYRMLRYHEDE 234 >gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 230 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ ++ L+ F V G +G + + + D IILDL L + G + Sbjct: 4 KVLVVDDEPSIVTLLKFNLEQAGFEVLTASDGNEGYDTARKEKLDVIILDLMLPGMDGMD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR+ KI+TP+ +L+ S DK+ GL+ GADDYI+KPF+ E+VAR++AI+RR Sbjct: 64 VCKQLRLGKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAILRRAET 123 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + I GDL + + + ++ LT KE++++ L+ L+++ LN Sbjct: 124 KTEEETAEAIKVGDLRILPEQFEAYFKEKKLELTPKEFELLLYLANHAGKVLSRDQLLNA 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + +I+DV I LR+K+ YI+TV G GY Sbjct: 184 VWNFDFAGDTRIVDVHISHLREKMEEDTKQPQYIKTVRGFGY 225 >gi|121594313|ref|YP_986209.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|222110947|ref|YP_002553211.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|120606393|gb|ABM42133.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] gi|221730391|gb|ACM33211.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+AL+ ++ L+++ F V + ++ A++LDL L D G Sbjct: 1 MRVLLVEDDEALSEAVCGYLRAKAFVVDAVPSLAQAGAALRAAQYAAVLLDLHLADGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R K V +L+ + D++ GL +GADDY+ KP++ EL+AR+RA+ RR Sbjct: 61 SLLPQIRALKDRPIVIVLTARDQVSDRIAGLDAGADDYLVKPYDPGELLARLRAVERRRN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++L + V G I LT KE+ ++ +++ R T+E + LY Sbjct: 121 AAYVPVLALGDLQIDLSREQVRRAGVPIALTQKEWALLRVMATRPERIHTRESLQDALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + ++VFI +LR+KL G+ +IET+ G GY L Sbjct: 181 FDDEADSNTLEVFISRLRRKL-----GREHIETLRGLGYRL 216 >gi|208779566|ref|ZP_03246911.1| two component response regulator [Francisella novicida FTG] gi|208744527|gb|EDZ90826.1| two component response regulator [Francisella novicida FTG] Length = 229 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 133/225 (59%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +DDK +A I+ + + V G++ + L +D I++D + + G Sbjct: 6 KVLVADDDKKIAQFIKNKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWMMPYLDGIS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L+ LR I+TPV ILS + S E+K+ GL+SG+DDY++KPF+ +EL+ R+ + +R++ Sbjct: 66 LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125 Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 AQ+ ++ GD+ ++ A V I L +EY+++ LL KN ++K M L + Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D +P+ +++V I +LR KL+ G + I+T+ G GYV++E Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLT-EGGLSDPIKTIRGFGYVIQE 229 >gi|2245588|gb|AAB92482.1| IrlR [Burkholderia pseudomallei 1026b] Length = 229 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F + G G+ + E+D IILD+ L G+ Sbjct: 1 MRILIVEDEPKTGMYVRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR A STPV L+ + D+V+GL+ GADDY+ KPF+ ELVAR+R+I+RR + Sbjct: 61 TVLERLRRAH-STPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL ++L + QG + LT KE+ ++ LL R+ L + + ++D Sbjct: 120 ARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFNSDTNVVDAAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219 >gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 238 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 116/218 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 16 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 76 VARRLRAEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 135 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 136 EPVAAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 195 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 196 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 233 >gi|257889529|ref|ZP_05669182.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|260559821|ref|ZP_05832000.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|257825889|gb|EEV52515.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|260074045|gb|EEW62368.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 134/223 (60%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L++EDDK L+++I+ +L + V D G +G+ + +D ILDL + ++ G+ Sbjct: 2 IKLLVVEDDKVLSNNIKEILAAIGEITQVYD-GSEGLFELESGVYDLAILDLMMPEMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R KI PV IL+ S+EDK+ G + GADDY++KPF +EEL+ R++A+++RS Sbjct: 61 EVLAKIRKEKIQPPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSL 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++++ D+S +L + V + + + GKE++++ K LTKE + ++ Sbjct: 121 GLFDENVLKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I+V++ LRK L + K I+T+ GY+L+ Sbjct: 181 GFDSDTTITVIEVYMSNLRKHLRSTGLDKE-IKTLRNVGYILQ 222 >gi|162147449|ref|YP_001601910.1| two component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786026|emb|CAP55608.1| putative two component response regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 277 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/200 (38%), Positives = 118/200 (59%), Gaps = 5/200 (2%) Query: 27 VYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIE 85 V +T G +G +E + +D ++ G P +LR +R +++ TPV I++ ++ Sbjct: 41 VSITMSGPEGSVETLRRSHYDLAVIQQGS---PNARLLRRIRSSRVPTPVIIIARDTTPP 97 Query: 86 DKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQG 145 L GADD + + EL+AR+RAIVRR+ GH + G L+VN++ + V + G Sbjct: 98 AIAEVLSVGADDCVPASIDPTELLARLRAIVRRAGGHDSLTLQIGRLTVNVNQREVHIDG 157 Query: 146 HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA 205 + LT +EY ++ELL+LRKN L+KE L+ LY G+ EP K+IDV ICK+RKK+ Sbjct: 158 KPVPLTRREYDVVELLALRKNQALSKESVLDSLYAGQHEPSGKVIDVMICKIRKKM-RGL 216 Query: 206 GGKNYIETVWGRGYVLRENA 225 G + + T WG GY L E+A Sbjct: 217 GIEEPLTTQWGIGYRLNEDA 236 >gi|110798695|ref|YP_695502.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168211129|ref|ZP_02636754.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|110673342|gb|ABG82329.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170710848|gb|EDT23030.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++ +A IEL L E + V D G G+E+ + E D IILD+ L +I G Sbjct: 2 VKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEVDLIILDVMLPEINGL 61 Query: 61 EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 EVLR R+ K+S P+ +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR +++ Sbjct: 62 EVLR--RIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I G L+++ V I LT +E+ ++++L KN LT+++ + Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +IDV++ LR K+ + K I TV G GYV+++ Sbjct: 180 KVCGYNYVGETNVIDVYVRYLRTKIDDVFKVK-IISTVRGVGYVIKD 225 >gi|223983580|ref|ZP_03633761.1| hypothetical protein HOLDEFILI_01042 [Holdemania filiformis DSM 12042] gi|223964425|gb|EEF68756.1| hypothetical protein HOLDEFILI_01042 [Holdemania filiformis DSM 12042] Length = 258 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 131/232 (56%), Gaps = 7/232 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDKA+ + I L ++++ GE G++ + D ++LDLGL D G + Sbjct: 6 ILIVEDDKAVRNLIAATLDTQDYRYLTAGTGEQGLQEATLRQPDIVLLDLGLPDGDGVSI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R +R + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R +RR Sbjct: 66 IRRIRTWSL-MPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELLARVRVTLRRLRYI 124 Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +A+S + T G+L+V+ + V ++G +HLT EY+++ LL+ LT L Sbjct: 125 QNQNAESPVFTNGELTVDYSSGCVYLRGQELHLTPSEYKLLCLLARNVGKVLTHTAILKE 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKDE 228 ++ + +V + VF+ LRKKL G YI+T G GY +LR DE Sbjct: 185 IWGSTLDSDVASLRVFMTTLRKKLEKGPGSFQYIQTHVGVGYRMLRVEPSDE 236 >gi|209364040|ref|YP_001424665.2| transcriptional regulatory protein [Coxiella burnetii Dugway 5J108-111] gi|207081973|gb|ABS77180.2| transcriptional regulatory protein [Coxiella burnetii Dugway 5J108-111] Length = 232 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 129/228 (56%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-FDAIILDLGLTDIP 58 MR+LL+EDD+ L I LK + +V D L +E FD IILDLGL Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +VL+ +R TPV IL+ +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ A+ +I GD++++ + V ++ + ++ +E+ +++ L +++E L Sbjct: 130 SKERAKPIISHGDITLDPASHVVTLKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 Y + + ++V I LRK+ G I T+ G GY++ + +K Sbjct: 190 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSK 232 >gi|209545558|ref|YP_002277787.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209533235|gb|ACI53172.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 266 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/200 (38%), Positives = 118/200 (59%), Gaps = 5/200 (2%) Query: 27 VYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIE 85 V +T G +G +E + +D ++ G P +LR +R +++ TPV I++ ++ Sbjct: 30 VSITMSGPEGSVETLRRSHYDLAVIQQGS---PNARLLRRIRSSRVPTPVIIIARDTTPP 86 Query: 86 DKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQG 145 L GADD + + EL+AR+RAIVRR+ GH + G L+VN++ + V + G Sbjct: 87 AIAEVLSVGADDCVPASIDPTELLARLRAIVRRAGGHDSLTLQIGRLTVNVNQREVHIDG 146 Query: 146 HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA 205 + LT +EY ++ELL+LRKN L+KE L+ LY G+ EP K+IDV ICK+RKK+ Sbjct: 147 KPVPLTRREYDVVELLALRKNQALSKESVLDSLYAGQHEPSGKVIDVMICKIRKKM-RGL 205 Query: 206 GGKNYIETVWGRGYVLRENA 225 G + + T WG GY L E+A Sbjct: 206 GIEEPLTTQWGIGYRLNEDA 225 >gi|294812933|ref|ZP_06771576.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325532|gb|EFG07175.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 260 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 39 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 98 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 99 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEE 157 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 158 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 217 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 218 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 255 >gi|254293636|ref|YP_003059659.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254042167|gb|ACT58962.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 223 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 126/228 (55%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L ++ L + V + GEDG L + +DA+ILDLGL + G Sbjct: 1 MRLLVVEDDPDLGRQLKTSLSEAGYAVDLAVDGEDGHYLGETEPYDAVILDLGLPKMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV IL+ +KV G +GADDY++KPF EEL+AR+RA++RRS Sbjct: 61 RVLEKWRAEGKVMPVLILTARDRWSEKVAGFDAGADDYLTKPFITEELLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + GDL V+ + V G I LT EY+++ + + + + + H+YD Sbjct: 121 GHASSALELGDLRVDTSSARATVGGQPIKLTAHEYRVLSYMMHYQGRVVPRTELVEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + I+VF+ +LRKK+ G + I T G GY L + A +E Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GSDRILTERGLGYRLVDPAANE 223 >gi|268316385|ref|YP_003290104.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333919|gb|ACY47716.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 246 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 6/238 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPGFE 61 +L++EDD +A +++ + + + V +EL + FD ++LD+ L D GFE Sbjct: 10 MLIVEDDADVAQALQDFFELQGYRVTHAPEAHKALELLTNAHRFDVVLLDVMLPDRSGFE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + TPV +L+G E ++G GADDYI KPF+ +E+ AR+RAI++R++ Sbjct: 70 VLQEMRRRGLETPVLVLTGRGEREQVLQGFGLGADDYIVKPFDPDEVAARVRAILQRTQP 129 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + GD+ +N RI+ T E ++ L + +T+E L + Sbjct: 130 PDRAPMQIYHIGDVEINFSTHEAYRGSERINFTAMELNVLRYLIHHRGEVVTREQLLRDV 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 + + E + ID I +RKK+ YIETV+G+GY LR A+D++ T+ Sbjct: 190 WHIVGDVETRTIDRHIASIRKKIEPDLRQPRYIETVYGKGYRLR--AEDQSTNSPPTS 245 >gi|225850505|ref|YP_002730739.1| transcriptional activator protein IrlR [Persephonella marina EX-H1] gi|225645423|gb|ACO03609.1| transcriptional activator protein IrlR [Persephonella marina EX-H1] Length = 218 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 126/219 (57%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L +++ +L+ + V GE+ ++ E+D IILD+ L I G+ Sbjct: 1 MKILIVEDNVQLNDTLKEVLEINGYLVDTAFDGEEALDYLNATEYDLIILDIMLPKIDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + R I+TP+ +L+ +EDKV+GL GADDY+ KPF +EL+AR+RA++RR+ Sbjct: 61 QVCQLARDKGINTPILMLTAKDRLEDKVKGLDIGADDYLVKPFEIDELIARVRALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I G+ ++L+ + V+ G ++ +T K + ++E L + +T E +N +D Sbjct: 121 AEKSNIIKIGEFVIDLNRREVKKNGTKLMITPKLFCILEQLLRNRGKVVTYETLMNKCWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D P + + I LRK L + ++ I V G GY Sbjct: 181 INDYPTRETVRANIKLLRKILQD----RDIIHNVSGVGY 215 >gi|158340377|ref|YP_001521733.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310618|gb|ABW32232.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 222 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 8/222 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ ED+ +A IE LKS F + L EFD +ILDLGL D G EV Sbjct: 4 ILIAEDEPRIASFIEKGLKSHGFTTTTIGDAHATLSLAASGEFDLLILDLGLPDRDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 L LR P+ IL+ I+DK+ GL+ GADDY++KPF EEL+AR+R +R + + Sbjct: 64 LADLRGHGAKLPILILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTNIHQ 123 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q L +V ++ ++L A+ +V I L +E+ + E L+++ L+ ++ Sbjct: 124 STSQPLTMVARNVVLDLRARKAKVHDQWIELPAREFILTEAFFQHPGQVLSRQQLLDRVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ LRKKL G + I+TV G GY L Sbjct: 184 GYDYDPGSNIVDVYVGYLRKKL-----GDDLIQTVRGVGYRL 220 >gi|114800395|ref|YP_760884.1| DNA-binding heavy metal response regulator [Hyphomonas neptunium ATCC 15444] gi|114740569|gb|ABI78694.1| DNA-binding heavy metal response regulator [Hyphomonas neptunium ATCC 15444] Length = 227 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L + + V GEDG+ L E+DAI++D+ + + G Sbjct: 1 MKILIVEDEPKTIAYLQRGLTEQGYAVDTAANGEDGLHLALTGEYDAIVMDVMMPGLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL++LR++K TPV L+ ++D++RGL +GADDY+ KPF+ ELVARI+AI RR R Sbjct: 61 LVLQSLRISK-DTPVIFLTARDKVDDRLRGLGAGADDYLVKPFSFLELVARIQAITRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI DL ++L ++ R++LT +E+ ++ L+ R++ ++K ++D Sbjct: 120 TRETTLIQVADLHIDLVSRRAIRGARRLNLTAREFSLLAALARRRSQIVSKTAIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++V I +LR KL G + TV G GYVL Sbjct: 180 INFDTNTNVVEVAIKRLRSKLEE-PGEIRLLHTVRGMGYVL 219 >gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 127/228 (55%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I L+ + V GE+ +++ +D ++LD+ L + GFE Sbjct: 4 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RR+ Sbjct: 64 VCQHIREFS-NMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAA 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I GDL ++ +++ + + G ++LT KE+ ++ELL N +E LN Sbjct: 123 SQPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +V+ +DV + +LR+K+ + Y+ WG GY +N Sbjct: 183 LVWGYEYPGDVRTVDVHVRRLREKIESNPSEPKYVHIKWGVGYYYSQN 230 >gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074] gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074] gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074] Length = 246 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 127/233 (54%), Gaps = 11/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V G D +E Y D I+LD+ + + G Sbjct: 14 RILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKAASYRPDLIVLDIQMPRMDGLT 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R A+ + P+ +L+ ++ D+V GL +GADDY+ KPF +EL AR+RA++RRS Sbjct: 74 AARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSY 133 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKE 172 + ++ DL ++L + V ++G+R + LT E+ ++E+L LT+E Sbjct: 134 AVEQAAPDDDGDVLAFADLRMDLSTREV-LRGNRPVELTRTEFTLLEMLLAHPRQVLTRE 192 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ EP +DV++ LR+K + A G + TV G GYVLR + Sbjct: 193 QILKAVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRSGS 244 >gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2] gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2] Length = 240 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I L+EDD +A ++L LK E + + G +E + + +DA+ILDL L + G E Sbjct: 6 KIFLVEDDSDIASLLQLSLKDEGYEIVHEADGARALEQLEKHVWDAVILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY++KPF+ EL+AR++A+ RR Sbjct: 66 ICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQEA 125 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +Q+L I + ++ A+ V + G + LT +E+ ++ + +++ L Sbjct: 126 MSQNLRMEAGIITVHGVEIDPLAREVRLHGKSLDLTPREFDLLYFFARHPGEVFSRQALL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + E ++ I +LR K+ A I TVWGRGY L Sbjct: 186 DQVWGYQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 231 >gi|255655706|ref|ZP_05401115.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296451712|ref|ZP_06893444.1| DNA-binding response regulator [Clostridium difficile NAP08] gi|296878956|ref|ZP_06902955.1| DNA-binding response regulator [Clostridium difficile NAP07] gi|296259475|gb|EFH06338.1| DNA-binding response regulator [Clostridium difficile NAP08] gi|296430069|gb|EFH15917.1| DNA-binding response regulator [Clostridium difficile NAP07] Length = 223 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K L S+ L+ ++F + GE+ + L +D +ILDL L +I GF Sbjct: 1 MKVLIVEDNKILLESVAEELR-KHFETEKCEDGEEALYLVNQNIYDLVILDLMLPNINGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +RV I TPV IL+ +++DKV GA+DY++KPF EELVAR+ AI+ R+ Sbjct: 60 DILKKMRVNNIDTPVLILTAKETLDDKVEAFTIGANDYLTKPFYMEELVARVYAIL-RTN 118 Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + S+ LD K V ++ I L K++ ++E L K + L KE + + Sbjct: 119 GKIKERNGLEFKSLYLDTLEKRVYIEKEEIKLQNKQFNLLEYFVLNKGSILLKEQIYDRI 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++I++V++ LRKKLS G YI+T GY+ Sbjct: 179 WGIDSDATIEIVEVYVSNLRKKLS-KYGYDKYIKTKRKVGYIF 220 >gi|221200151|ref|ZP_03573194.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] gi|221206696|ref|ZP_03579708.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221173351|gb|EEE05786.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221180390|gb|EEE12794.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] Length = 252 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIATVRGLGYCL 218 >gi|205353035|ref|YP_002226836.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272816|emb|CAR37742.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628114|gb|EGE34457.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 2 MRVLVVEDNALLLHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 59 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 221 >gi|153953595|ref|YP_001394360.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346476|gb|EDK33012.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 230 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ + + I LK E +N+ GED I F +ILDL L I G E Sbjct: 5 RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR +R + + P+ ILS D++ GL GADDYI KPF+ EL AR+++ +RR Sbjct: 65 VLRKIRESS-TVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 123 Query: 119 -SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ ++++ I+ DL +N V + ++LT KE+Q+++L + TK N Sbjct: 124 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + + + V I +LR K+ + YI TVWG GY L E Sbjct: 184 NVWENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKLGE 230 >gi|126728700|ref|ZP_01744515.1| probable two-component response regulator protein [Sagittula stellata E-37] gi|126710630|gb|EBA09681.1| probable two-component response regulator protein [Sagittula stellata E-37] Length = 225 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+I+L EDD +A I L +V +V D G D + + + D ILD L + G Sbjct: 1 MKIMLAEDDTKVADYIVAGLSEHGHSVDHVAD-GRDALSYLLYNDCDLAILDRMLPGMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 VL+ALR +K S PV L+ M ++D+V GL +G+DDY++KPF+ ELVARI AIVRR Sbjct: 60 LSVLKALRASKKSLPVLFLTAMGQVDDRVEGLAAGSDDYLTKPFHFSELVARIDAIVRRK 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A+ ++ DL+++L A+T QG + L KE+ ++E+L +T+ + L + Sbjct: 120 TETRAEPVLTVHDLTLDLLARTATRQGTVMELHSKEFAILEILMRNSGRVVTRTLLLERV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P +++ + +LR K+ + I T+ GY + Sbjct: 180 WNFNFDPNTTVVETHMSRLRAKV-DKPFETPLIHTIRNTGYSM 221 >gi|161523829|ref|YP_001578841.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189351409|ref|YP_001947037.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221211333|ref|ZP_03584312.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|160341258|gb|ABX14344.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189335431|dbj|BAG44501.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221168694|gb|EEE01162.1| DNA-binding response regulator [Burkholderia multivorans CGD1] Length = 252 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLPKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIATVRGLGYCL 218 >gi|260905731|ref|ZP_05914053.1| response regulator receiver [Brevibacterium linens BL2] Length = 242 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + + + + + G D + + FDAI+LD+ L D+ GF Sbjct: 14 RVLIVDDEANLAELLVMACQVKGWEAASVGTGRDAVARARNEHFDAIVLDVMLPDLDGFA 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ +R I TPV LS ++D++ GL+ G DDY++KPFN +E++AR+ A +RRS Sbjct: 74 VIEKVRGEGIDTPVVFLSARDEVDDRLTGLRLGGDDYVTKPFNLDEVIARVEARLRRSAP 133 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S L+ GDL +++ + V GH I LT +E++++ L L+K L+ Sbjct: 134 VIPSGDEDLLRVGDLELDVRSHEVSRAGHPIDLTAREFEVLLLFMRNPRAVLSKAQILDR 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLREN 224 ++D I+++++ LRKK+ N T G GY+LR + Sbjct: 194 VWDYDFGGNGNIVELYVSYLRKKIDAPFEDLPNLFHTKRGAGYILRAD 241 >gi|323127354|gb|ADX24651.1| transcriptional regulatory protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 132/227 (58%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+EDD +L++SI L V D G++G+ + +D I+LDL L + GF Sbjct: 2 IKLLLVEDDLSLSNSIFDFLDDFADVTQVFD-GDEGLYEAESGIYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I PV I++ S++DK +G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKELREKDIKIPVLIMTAKESLDDKGQGFELGADDYLTKPFYLEELKMRIQALLKRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G++ V+L K V+V G I L GKE+ ++ L +N L K + L+ Sbjct: 121 KFTDKNLAFGNVVVDLGQKEVQVDGRPIELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYI---ETVWGRGYVLREN 224 + + +++V++ K+RKKL G +++ +T+ GY+L+ + Sbjct: 181 FDSDTTISVVEVYVSKIRKKLK----GTDFVDKLQTLRSVGYILKSH 223 >gi|321313923|ref|YP_004206210.1| two-component response regulator YcbM [Bacillus subtilis BSn5] gi|320020197|gb|ADV95183.1| two-component response regulator (YcbM) [Bacillus subtilis BSn5] Length = 230 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +++ ++ L E F + GE+GI L + +D ++LD+ L + G + Sbjct: 3 RILLVEDDHSISEMVDHYLTKEGFGIVYAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R K + PV ++S DK GL GADDYI+KPF+ EL AR++A +RR+ Sbjct: 63 FLKIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ +I L++++D +V G + LT E+Q++ L + TKE Sbjct: 122 YSAEELAVNKVIRIHQLAIDVDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 182 RSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229 >gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 243 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ A+ +++ L E + V G D + + Y D I+LD+ + + G Sbjct: 10 RVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEAYAPDLIVLDIQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 70 AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ DL ++L+ + V R+ LT E+ ++E+ LT+E Sbjct: 130 AVAAGGTDPDDDVLSFADLRMDLNTREVTRGSRRVELTRTEFTLLEMFLAHPRQVLTREQ 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ EP +DV++ LR+K + A G + TV G GY LR D Sbjct: 190 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRSGGGD 242 >gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 239 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+ LA + L E ++ V D G G++ FD IILD+ L + GFE Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + TP+ IL+ ++ E+ V+GL+ GADDYI+KPF EL+AR+ A++RR++ Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ +I GDLS+ + V + G + L KE++++ L R +T++ Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +N ++ + +DV + LRKKL G IE++ G GY L Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLE--LGQSVQIESIRGVGYKL 228 >gi|119899236|ref|YP_934449.1| two component response regulator [Azoarcus sp. BH72] gi|119671649|emb|CAL95562.1| two component response regulator [Azoarcus sp. BH72] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V + G DG+ L ++D ++LD+ L + G+ Sbjct: 1 MKILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALGGDYDLVVLDVMLPSLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R A PV L+ +ED+VRGL+ GADDY+ KPF EL+AR+R ++RR + Sbjct: 61 GVLQTVRRAGHEMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL ++L + V G RI LT KE+ ++ELL R+ L + + + ++D Sbjct: 121 AKEAEVLRAADLELDLLRRRVVRGGQRIDLTAKEFALLELLLRRQGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+V + +LR K+ ++ K I TV G GYVL Sbjct: 181 MNFDSDTNVIEVAVRRLRAKVDDSFEPK-LIRTVRGMGYVL 220 >gi|73542175|ref|YP_296695.1| heavy metal response regulator [Ralstonia eutropha JMP134] gi|72119588|gb|AAZ61851.1| Heavy metal response regulator [Ralstonia eutropha JMP134] Length = 228 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V + G DG L +D IILD+ L D+ G+ Sbjct: 1 MKLLVVEDEAKTGEYLRQGLTEAGFVVDLAANGLDGHHLAMSEAYDLIILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A PV L+ S+ D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 RIVQTLRAAGNRVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + GDL ++L + G RI LT KE+ ++ELL R+ L + + + ++ Sbjct: 121 VQASVDRVQVGDLVLDLARRRASRGGRRIVLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I+TV G GYVL Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDDFDTK-LIQTVRGMGYVL 221 >gi|37677144|ref|NP_937540.1| putative two component response regulator transcription regulator protein [Vibrio vulnificus YJ016] gi|37201689|dbj|BAC97510.1| putative two component response regulator transcription regulator protein [Vibrio vulnificus YJ016] Length = 231 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+K + L + V + G DG+ +D I+LD+ L + G+ Sbjct: 1 MKLLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVMLPHLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR +++ TPV +L+ +ED+V+GL+ GADDYI KPF EL+ARIR +++R + Sbjct: 61 QVLRALRSSQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQQ 120 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 QS + +L ++L + V I LT KE+ ++EL + +++ + + Sbjct: 121 PTTQSTTRLSIANLHLDLLRRKVFRDKEPIALTAKEFALLELFMRKTGEVMSRSQIASSV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +D + + +IDV + +LR K+ K I T G GYVL E E C Sbjct: 181 WDMNFDSDTNVIDVAVRRLRNKVDKPFEPK-LIHTERGMGYVLEER---EPC 228 >gi|322806654|emb|CBZ04223.1| DNA-binding response regulator [Clostridium botulinum H04402 065] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++ L+ IEL LK E + + + G G+E+ + E D ++LD+ L +I G Sbjct: 2 VKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVLR LR P+ +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR ++ Sbjct: 62 EVLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAFKKRI 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I G LS++ V I LT +E+ ++++L KN LT+ + + Sbjct: 121 VTVRKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +IDV+I LR K+ +A K I TV G GYV+++ Sbjct: 181 VCGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKD 225 >gi|218905898|ref|YP_002453732.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228929721|ref|ZP_04092738.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|218536884|gb|ACK89282.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228829900|gb|EEM75520.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 229 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A I R R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|167033875|ref|YP_001669106.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166860363|gb|ABY98770.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L IEDD I L S V D G +G+ +D I LD L ++ G Sbjct: 3 RVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIAGGYDLITLDRMLPEVDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 ++ LR KI+TP+ ++S +S ++++VRGL++G DDY++KPF +E+ AR+ ++RR S Sbjct: 63 IVTTLRSLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSV 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + DL ++L + + ++L EY+++E L +T+ M ++ Sbjct: 123 PMTQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ ++ G I TV G GY + E Sbjct: 183 YHFDPGTNLIDVHIGRLRKKI-DSPGQSPLIRTVRGSGYAIAE 224 >gi|187927570|ref|YP_001898057.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|187724460|gb|ACD25625.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 236 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 12/227 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG------IELCKFYEFDAIILDLGL 54 MRIL+ EDD LA + L+ Y D DG + +D +ILD+GL Sbjct: 1 MRILIAEDDATLADGLTRSLRQAG---YAVDQASDGATADAALSAQTAQTYDLLILDVGL 57 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G EVL+ LR PV IL+ S+E++V+GL GADDY++KPF EL AR+RA Sbjct: 58 PRMSGLEVLKRLRSRGAMLPVLILTAADSVEERVKGLDLGADDYMAKPFALSELEARVRA 117 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +VRR G +L+ G L+ + + + + L+ +E ++E+L R ++KE Sbjct: 118 LVRRGTGGGATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGLLEILLARVGRLVSKEQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++HL +E I+V+I +LRKK+ I TV G GY L Sbjct: 178 VDHLCGWGEEVSNNAIEVYIHRLRKKIEVEG---IRIATVRGLGYCL 221 >gi|238927716|ref|ZP_04659476.1| response regulator [Selenomonas flueggei ATCC 43531] gi|238884432|gb|EEQ48070.1| response regulator [Selenomonas flueggei ATCC 43531] Length = 228 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +A +++ L+ E F + G E FD I+LD+ L + G E+ Sbjct: 7 VLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPGMDGIEI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R + P+ +L+ ++ED+V GL GADDYI+KPF EL+AR+R +RR S Sbjct: 67 CRRVRTVS-NVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARVRNALRRRDIS 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + +L + L V+V G + LT +EY ++E L K T LT++ L ++ Sbjct: 126 TDDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++DV+I LR KL + K YI TV G GYV+R+ Sbjct: 186 GFDYTGETNVVDVYIRYLRAKLDDRF-HKKYIYTVRGVGYVVRD 228 >gi|225575608|ref|ZP_03784218.1| hypothetical protein RUMHYD_03700 [Blautia hydrogenotrophica DSM 10507] gi|225037161|gb|EEG47407.1| hypothetical protein RUMHYD_03700 [Blautia hydrogenotrophica DSM 10507] Length = 236 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M I+++EDDK + + I LK ++ +T G I + D I+LDLGL DI G Sbjct: 6 MLIMVVEDDKLVGNLITSTLKVNDYKYILTTTGNTAIMEAVSHRPDVILLDLGLPDIDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV++++R + P+ ++S S +DK+ L +GADDY++KPF+ +EL+AR+R+ +RR Sbjct: 66 EVIKSVRSWSMC-PIIVISARSEDKDKIDALDAGADDYLTKPFSVDELLARLRSTMRRIQ 124 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G + G L ++ + +V V+G IHL EY ++ LL+ LT Sbjct: 125 YLEDNAGKETPVFENGQLRIDYSSASVTVKGEEIHLMPIEYSLLCLLAQNIGKVLTHSYI 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ E ++ + V++ LRKK+ YI+T G GY Sbjct: 185 LDKIWKNSIESDLSSLRVYMTSLRKKIEIGCERGTYIQTHIGIGY 229 >gi|161522889|ref|YP_001585818.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348280|ref|YP_001941476.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|160346442|gb|ABX19526.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189338418|dbj|BAG47486.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 221 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L I L+ + F V +V D G+ + + A ILDLGL + G Sbjct: 1 MRILLVEDDILLGDGIRAGLRQQGFQVDWVRD-GDAAQRELRAHAHAAAILDLGLPLVDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+ +R ++ P+ IL+ ++ D++R L GADDY+ KP + EL AR+RA+VRR+ Sbjct: 60 MDVLQRIRRDGMALPILILTARDAVPDRIRALDVGADDYVIKPVDLYELGARLRALVRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + D+ + ++T G + L+ +E+ ++ +L L L++E +LY Sbjct: 120 HGRPTERLQAQDVELEPASRTARRAGVAVALSTREFDLLHILMLNAGRVLSREQIELYLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E ++V + +LR KL G I TV G GYVL +A Sbjct: 180 SWGQEVESNAVEVHVHRLRAKL-----GSELIRTVRGVGYVLMRDA 220 >gi|145294164|ref|YP_001136985.1| hypothetical protein cgR_0122 [Corynebacterium glutamicum R] gi|57157979|dbj|BAD83953.1| two-component system response regulator [Corynebacterium glutamicum] gi|140844084|dbj|BAF53083.1| hypothetical protein [Corynebacterium glutamicum R] Length = 240 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 74 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSVRELVTRVHAVLRRPRT 132 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235 >gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 229 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++A+ + + L+ E F+V G+ + D ++LD+ L DI GF Sbjct: 5 VRVLVVDDEEAITDLVAMALRYEGFDVSAAHSGQAALTQVSREPPDLLVLDVMLPDIDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 V + LR A P L+ + EDKV GL G DDY++KPF ELVAR+RAI+RR+ Sbjct: 65 AVCQRLRNAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRAG 124 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + DL ++ + + V G + LT EY+++ L + LT+ L+H+ Sbjct: 125 MADGAPEPLRFADLELDPETREVRRAGRLVELTVTEYRLLHYLLVNARKVLTRAQLLDHV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++++ ++ LR+K+ +A I TV G GYVLR Sbjct: 185 WGHDFGGDARVLETYVSYLRRKIDDAP--PALIHTVRGVGYVLR 226 >gi|94314245|ref|YP_587454.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358097|gb|ABF12185.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] Length = 221 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ + ++ LK + + G+ ++ +D ++LDLGL G Sbjct: 1 MRVLLVEDDRMIGQVVQDALKDASCAADWVEDGQAALDALDRQHYDVVLLDLGLPRKSGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +LR + PV IL+ ++ED++ GL +GADDY+ KPF +EL+AR+RA+ RR Sbjct: 61 AVLTSLRARGSAVPVLILTARDALEDRIGGLDAGADDYLVKPFEMDELLARMRAVWRRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A S++ G +S++L + + G LT +E+ +++ L R L++ +Y Sbjct: 121 GLASSVLGNGRVSLDLSTRQATLTGGAPQQLTNREFALLQALLARPGAILSRAELEERIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DE E ++ I LR+KL G I V G G+ Sbjct: 181 GWGDEVESNAVEFLIHGLRRKL-----GSTIIRNVRGVGW 215 >gi|317057288|ref|YP_004105755.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449557|gb|ADU23121.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 220 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 123/217 (56%), Gaps = 3/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD L+ + L++E + V + G+ ++L + Y ++LD+ L D+ GF V Sbjct: 4 ILIVEDDIELSSLLTDFLRAEGYTVSAVESGDRALQLFERYGARLVVLDINLPDVNGFAV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR + TP+ I+S + +DK+ G GADDYI KP++ + L+A+I+ I +R R Sbjct: 64 CSKLR-EQADTPILIVSCRTDKDDKLNGFGLGADDYIEKPYDIDILIAKIKGIFKR-RYQ 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ G + +NL +T E+ G + LT KE+ ++ LL K+ L KE N+++ Sbjct: 122 LDTISADG-VKLNLADRTAEIDGEAVELTVKEFDLLTLLVQNKDKVLKKEYLFNNVWGSD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E++ + V I +LR+KL + + TVWG GY Sbjct: 181 SDSEMQTLHVHINRLRQKLGDDPKSAKRLLTVWGVGY 217 >gi|219667582|ref|YP_002458017.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537842|gb|ACL19581.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD +A L+ + V + G G++ +D +I+DL L + GFE+ Sbjct: 4 ILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGTYDILIVDLMLPQLDGFEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 ++ +R K+ P+ +LS S DK+RGL GADDY++KPF+ EL+ARIR+ ++R Sbjct: 64 IKEVR-KKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRYERL 122 Query: 121 -GHAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G Q + V L +N + V V G + T KEY+++ + N +KE + Sbjct: 123 TGKHQGIEVINHRGLEINTASHKVYVNGKEVQFTAKEYELLLFFASNPNILFSKERIFDL 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + V I K+RKK+ YIETVWG GY Sbjct: 183 LWGAEYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGY 224 >gi|42781127|ref|NP_978374.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737048|gb|AAS40982.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 229 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L I GF+V Sbjct: 4 ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKAIREENKKIGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +G S+N+ + + G + LT EY ++ L + ++++ LN ++ Sbjct: 124 DEKADMITSGPFSLNVIEERLYKNGQLVDLTPTEYMILHYLMNQAAKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+KL I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKLECNPSEPEXILTVWGKGYVWKESIR 229 >gi|309789889|ref|ZP_07684467.1| transcriptional regulator [Oscillochloris trichoides DG6] gi|308228096|gb|EFO81746.1| transcriptional regulator [Oscillochloris trichoides DG6] Length = 234 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + L + + V V G++ +E + + I+LDLGL + G E Sbjct: 4 RILVVDDEPQMGRLLRTGLSARGYEVVVAADGQEALEQAVHWRPEVIVLDLGLPVMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R P+ +LS DKV L GADDY+ KPF +EL+ARIR +R S Sbjct: 64 VCRRIR-GWSQVPIIVLSARDGEPDKVEALDLGADDYLVKPFGMDELLARIRVALRHSSH 122 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + ++ G+L ++ + V ++GH +HLT EY+++ L + LT M L + Sbjct: 123 IQANDEPVLHFGELQIDRSRRIVTLKGHEVHLTPTEYELLRLFTNHVGKVLTHRMILRTV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E E+ + VFI +LR+K+ YI T G GY Sbjct: 183 WGANYEQELPTLRVFITQLRRKIEPDPAQPMYILTEPGIGY 223 >gi|205354093|ref|YP_002227894.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273874|emb|CAR38875.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629210|gb|EGE35553.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 219 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 61 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + G + L KE+ ++ELL K L +++ LY+ Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V + LR+KL G +I T+ G GY L Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTMHGIGYTL 216 >gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 246 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 19/245 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++DD A+ S+E L+ E + V G +E+ + D ++LD+ + + G Sbjct: 1 MRVLVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVMMPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R LR PV +L+ + D+V GL GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 ETCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRST 120 Query: 121 -------GHAQS------LIVTGDLS---VNLDAKTVEV--QGHRIHLTGKEYQMIELLS 162 GH + V LS V LD + +V +G + LT E++++EL Sbjct: 121 LVTRAGVGHGPAHGAEPGHGVPAALSYAGVALDPASRQVLREGRELTLTKTEFELLELFL 180 Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L++ M + ++ P ++VF+ LR+KL A G + TV G GYVLR Sbjct: 181 THPRQVLSRSMIMEKVWGYDFGPSSNSLEVFVSYLRRKL-EAGGEPRLLHTVRGVGYVLR 239 Query: 223 ENAKD 227 E A D Sbjct: 240 EPAAD 244 >gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 230 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + L+ F V G I E D I+LD+ L D+ GF Sbjct: 5 RILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEEPDLIVLDVMLPDMNGFS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 V + LR A + P+ L+ EDK+ GL +G DDY++KPF+ +E+VARI+AI+RR+ + Sbjct: 65 VTKRLRGAGYTAPILFLTAKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAILRRTMQ 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S+I TG+L+++ D V V I L+ E++++ L L N L+K L+H+++ Sbjct: 125 ADEESIIRTGELTMDQDTHDVSVGDVSIDLSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++ +I LR+K+ + + I+T G GY+L+ Sbjct: 185 YDFNGDAGIVESYISYLRRKI-DPHSSEPLIQTKRGFGYMLK 225 >gi|315039139|ref|YP_004032707.1| two-component response regulator [Lactobacillus amylovorus GRL 1112] gi|325957610|ref|YP_004293022.1| two-component response regulator [Lactobacillus acidophilus 30SC] gi|312277272|gb|ADQ59912.1| two-component response regulator [Lactobacillus amylovorus GRL 1112] gi|325334175|gb|ADZ08083.1| two-component response regulator [Lactobacillus acidophilus 30SC] gi|327184255|gb|AEA32702.1| two-component response regulator [Lactobacillus amylovorus GRL 1118] Length = 228 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L +N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG++ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGY 224 >gi|312866100|ref|ZP_07726321.1| putative response regulator ArlR [Streptococcus downei F0415] gi|311098504|gb|EFQ56727.1| putative response regulator ArlR [Streptococcus downei F0415] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++S+ L V D GE+G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSVYDFLDDFAEVTQVFD-GEEGLFEAETGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + TPV I + +++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 TVLKELRDKGVVTPVLITTAKEALDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ GDL + TV+V G + L GKE+ ++ +N L K + ++ Sbjct: 121 KINDKLLTYGDLECDTSTNTVKVNGKVVELLGKEFDLLVYFLQNQNVILPKTQIFDRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + V +++V++ K+RKKL K ++T+ GY+L++ Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTDFEKC-LQTLRSVGYILKD 222 >gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 233 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 10/226 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ +A +++ L++E ++ + GE+ + + + FD I+LD+ + + G E+ Sbjct: 5 ILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQPFDLIVLDVMMPRMDGLEL 64 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR K + P+ ++S + DK+ GL +GADDY++KPFN EL AR+++++RRS Sbjct: 65 CRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSLLRRSY 124 Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +++ + G L ++ VE G +HLT E+ ++ LL+ + + E Sbjct: 125 QYSKPAKSEDDGSLFIGGLKMDRTTHKVEADGRLLHLTSTEFGILYLLASQPGRVFSAEE 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 H++ + + V I KLR KL G K I TVWG GY Sbjct: 185 IFQHVWREKYFESNNTVMVHISKLRDKLEQETGDK-LIATVWGVGY 229 >gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 250 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54 RIL++ED++ + + + L+ E + V G IE K +E FD IILDL L Sbjct: 20 RILVVEDEELIQEMLAVALEEEGYGVITAPDGRSAIEYLKSFETNSGEVPFDLIILDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR P+ +LS S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 IVRRSR-GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR R + L V D+++N V V+G + L+ KE++++EL ++ Sbjct: 140 LLRRQRLSNLPQLPVLKFKDVTLNPQECRVLVRGQEVSLSPKEFRLLELFMSYARRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGY 247 >gi|302525771|ref|ZP_07278113.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302434666|gb|EFL06482.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 223 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I L+ E V + G+DG E +D ++LD L + G Sbjct: 1 MRVLVVEDEEPLADAIARGLRREGMAVDIALTGDDGHEKSSVTRYDVVLLDRDLPGMSGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R + + T V +L+ SS+ D+V GL GADDY++KPF ELVAR+RA+ RR+ Sbjct: 61 DLCREIVTSGELTRVLMLTASSSVSDRVDGLSLGADDYLAKPFAFPELVARVRALGRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A L+ GD+ ++ +TV + LT KE+ ++E+L + ++ E L ++D Sbjct: 121 PAAPPLLTAGDVELDPAKRTVRRASGPVELTRKEFGVLEVLLSAGGSVVSSEELLERVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P + V + LRKKL G IETV G GY Sbjct: 181 ENADPFTTTVRVTVMTLRKKL----GEPGIIETVVGSGY 215 >gi|160943091|ref|ZP_02090328.1| hypothetical protein FAEPRAM212_00570 [Faecalibacterium prausnitzii M21/2] gi|158445560|gb|EDP22563.1| hypothetical protein FAEPRAM212_00570 [Faecalibacterium prausnitzii M21/2] Length = 262 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 118/219 (53%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +L I L+ + V GE +E +D ++LDL L + G Sbjct: 38 MRLLVVEDEHSLREDIARKLRLSGYEVDACADGEAALEALAAERYDLVLLDLNLPKVDGM 97 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR+LR + T V ILS S I DKV GL +GA+DY+SKPF+ EL AR+R++ RR Sbjct: 98 QVLRSLRQHDLETCVLILSARSEIADKVEGLDAGANDYLSKPFHLAELEARVRSLTRRKF 157 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G LS N ++ V + LT KE ++E L L + +++E + H++D Sbjct: 158 IQQDVCLCCGRLSFNTRSRVATVDSQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVWD 217 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G + I V I LRKKL AA G + I G GY Sbjct: 218 GSVDSFSNSIRVHISALRKKL-RAALGYDPIRNRIGEGY 255 >gi|305672956|ref|YP_003864627.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|305411199|gb|ADM36317.1| two-component response regulator (paired with YcbM) [Bacillus subtilis subsp. spizizenii str. W23] Length = 230 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +++ ++ L E F + GE+GI L K +D I+LD+ L + G + Sbjct: 3 RILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R K + PV ++S DK GL GADDYI+KPF+ EL AR++A +RR+ Sbjct: 63 FLKIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ +I L++++D +V G + LT E+Q++ L + TKE Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR K+ + YI+T+WG GY L E Sbjct: 182 RSVWNEEYFGDQNIINVHMRRLRGKIEDDPSSPQYIKTLWGIGYKLGE 229 >gi|297539008|ref|YP_003674777.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297258355|gb|ADI30200.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 223 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 119/224 (53%), Gaps = 15/224 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG--IELCKFYE-FDAIILDLGLTDI 57 MR+LL+EDD + SI L EN Y D DG EL +D I+LDLGL Sbjct: 1 MRLLLVEDDVMIGESINEALNGEN---YAVDWARDGRSAELALANGVYDLILLDLGLPKK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VL R PV I++ S+ DKV GL +GADDY+ KPF+ +EL AR+RA++R Sbjct: 58 QGLQVLSEYRQRGGMLPVLIITARDSMADKVGGLDAGADDYLVKPFDLDELFARVRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM--FL 175 R G AQ +I G +++N V + G + L+G+E+ + LLSL + + Sbjct: 118 RHTGRAQPVITYGKVTLNPAIHEVHLDGQLLSLSGREFAL--LLSLLTPPGRVRSLAELE 175 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY E ++V I +LRKKL G N+I+ + G GY Sbjct: 176 EKLYSWDHEVASNTLEVLIHRLRKKL-----GTNFIQNIRGMGY 214 >gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] Length = 231 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ + LK E F V D GED + L +D +LD+ L + G+E Sbjct: 7 RILVVDDEPSITEFVSYALKKEGFFTDVVDNGEDALALATKNSYDLFVLDIMLPGMDGYE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR +K + PV LS + DKV GL+ G DDY++KPF EL+AR+RA++RR G Sbjct: 67 LCRRLR-SKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + ++++ DA T I LT +E++++ L +++E L Sbjct: 126 GDFPGANHAVTASGITLDEDAHTASGANGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E K +D I +LR K+ +A +ETV G GY ++ Sbjct: 186 AWGWEYLTETKTVDTHIKRLRDKIESAGYDPGLVETVRGYGYRFKQ 231 >gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ + +++ L+ E + V GE+G++ + D ++LD+ + + GF Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + LR P+ +L+ IED+V GL +GADDY+ KPF+ +EL+AR+RA++RR + Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + G++ +++ +T +H T KEY M+ LLS +++E FL+ ++ Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 P + +D I LR K+ + +I+TV G GY L Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRL 224 >gi|90578546|ref|ZP_01234356.1| hypothetical DNA-binding response regulator [Vibrio angustum S14] gi|90439379|gb|EAS64560.1| hypothetical DNA-binding response regulator [Vibrio angustum S14] Length = 225 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 126/227 (55%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD I L+ F V + G G+ + E+ IILD L + G Sbjct: 1 MKVLVIEDDVTTREFIAQGLREHGFVVDEAEDGHQGLMMATSCEYQLIILDRMLPILDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL ALR + TP+ ILS M S+ED+V GL +G+DDY++KPF EL+AR +V+R Sbjct: 61 KVLAALRATENETPILILSAMDSVEDRVAGLTAGSDDYLTKPFALAELIARANILVKR-- 118 Query: 121 GHAQSLIVTGDLS---VNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H S+ ++ + S + LD K+ V +G R ++L KE+ +++ L + +++ Sbjct: 119 -HQSSVNISSEYSYDDLRLDIKSHRVWRGSRELNLQQKEFLLLQYLMEHAESVVSRMSLF 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +P+ +IDV I LRKKL G + I TV G GYVLR Sbjct: 178 ESVWSYHFDPKTNVIDVHIANLRKKLEE-GGEPSLIHTVRGAGYVLR 223 >gi|19554154|ref|NP_602156.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391809|ref|YP_227211.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41327151|emb|CAF20995.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 240 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 74 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLIT 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235 >gi|25026789|ref|NP_736843.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259508073|ref|ZP_05750973.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492068|dbj|BAC17043.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259164296|gb|EEW48850.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 15/227 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ EDD +A I L E F V G +FD +ILDLGL + G + Sbjct: 5 RILIAEDDDGIADFIRRGLVQEGFECEVAVSGAAAFARAHSGDFDLMILDLGLPHMDGAD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR-------A 114 VL LRV K+S P+ +L+ ++IED++R L+ GADDY+ KPF EL+AR++ Sbjct: 65 VLEQLRVLKVSLPIIVLTARTNIEDRIRSLEGGADDYMPKPFQFAELLARVKLRLASRQP 124 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + R + H L+ G L ++L + V V L+ +E+ ++E L L++ Sbjct: 125 VERTTNTH---LLKHGTLELDLRTQKVFVADKWRDLSRREFDLLETLMRHPGQILSRAQL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++D +P ++DV+I LRKK+ G +ET+ G GY L Sbjct: 182 LNMVWDMSFDPGSNVVDVYIRALRKKI-----GTEKVETIRGSGYRL 223 >gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD + ++ +L E + V V + G G+++ + + +ILD+ + + G+E Sbjct: 4 RILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNPPELLILDIMMPGLDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R P+ ILS +E +V+GL GADDY+ KPF EEL+AR++A++RR Sbjct: 64 ICRRFRRENF-IPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRRKTN 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ +I DL ++L + V G + LT KE+ +++L N LTK+ ++H++ Sbjct: 123 SAK-VIQFADLKMDLSTREVHRAGVLLSLTSKEFDLLQLFLQHPNQVLTKDTIIDHIWGI 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++V++ LR+KL + I TV G GYVLRE Sbjct: 182 DYTGGSNVLEVYVNMLRQKLEEGNRSR-LIHTVRGVGYVLREQG 224 >gi|298370202|ref|ZP_06981518.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014 str. F0314] gi|298281662|gb|EFI23151.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014 str. F0314] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ +A +EL L +F + E +L FD ++LD+GL D GFE+ Sbjct: 5 ILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTEGFEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+ LR + PV +L+ D++ GL+ GADDYI KPF+ ELVAR++A++RR++ Sbjct: 65 LKTLR-PQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQTR 123 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A+S V D + A + QG + LT EY+++ L R ++E L + Sbjct: 124 PASEAESAPVWHD---DAPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAM 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + G + I+ I LR KL A I T G GY E Sbjct: 181 FGGNRPSDPHTINTHIRALRHKLRAAGVAGEPIRTHHGLGYSFNET 226 >gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 235 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 131/233 (56%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ I+ L+ E + V V GE+ ++ + D I+LDL L I G E Sbjct: 4 KVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R AK STP+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAKQVR-AKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDA 122 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I GDL+++ DA TV +G I+LT +E++++ L+ + +E Sbjct: 123 TVSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY L +D Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYLANPNQD 235 >gi|331696703|ref|YP_004332942.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951392|gb|AEA25089.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 221 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ALA ++ L+ E V + G +G E +D ++LD L + G Sbjct: 1 MRVLIVEDERALADAVARGLRREGLAVDLAYDGLEGQEKTSVTRYDVVVLDRDLPGMSGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + + T V +L+ S+ DKV GL GADDY++KPF+ ELVARIRA+ RR+ Sbjct: 61 ELCDEIVASAAPTRVLMLTASGSLADKVDGLSRGADDYLAKPFDFPELVARIRALGRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+V GD++++ +TV + LT KE+ ++E+L + ++ E L ++D Sbjct: 121 PATPPLLVAGDVALDPARRTVRRAEQVVELTRKEFGVLEVLMGARGAVVSSEELLERVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P + V + LRKKL G IETV G GY Sbjct: 181 ENADPFTTTVRVTVMTLRKKL----GEPGVIETVVGAGY 215 >gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541] gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541] Length = 234 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ +A +++ L+ E F G E FD I+LD+ L + G E Sbjct: 12 RVLIVEDETRIARFLQMELEHEGFEAETEGNGTRAYERIIQENFDIILLDVMLPGMDGIE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R A + P+ +L+ ++ED+V GL GADDYI+KPF EL+AR++ +RR Sbjct: 72 ICRRVR-AVTNVPIIMLTAKDAVEDRVEGLDIGADDYITKPFAVPELIARLKNALRRRDI 130 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S A + +L + L V+V G + LT +EY ++E L K T LT++ L + Sbjct: 131 STEDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E ++DV+I LR KL + K YI TV G GYV+R+ Sbjct: 191 WGFDYTGETNVVDVYIRYLRAKLDDRF-NKKYIYTVRGVGYVVRD 234 >gi|219854217|ref|YP_002471339.1| hypothetical protein CKR_0874 [Clostridium kluyveri NBRC 12016] gi|219567941|dbj|BAH05925.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 235 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ + + I LK E +N+ GED I F +ILDL L I G E Sbjct: 10 RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR +R + + P+ ILS D++ GL GADDYI KPF+ EL AR+++ +RR Sbjct: 70 VLRKIRESS-TVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 128 Query: 119 -SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ ++++ I+ DL +N V + ++LT KE+Q+++L + TK N Sbjct: 129 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 188 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++++ + + + V I +LR K+ + YI TVWG GY L E Sbjct: 189 NVWENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKLGE 235 >gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX] gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX] Length = 232 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 12/230 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI---ILDLGLTDIPG 59 +L+ +DD+A+ S+E L+ E Y T DG+E D + ILD+ + + G Sbjct: 7 VLIADDDRAIRESLERALQLEG---YQTRTAADGVETLAAVHSDPVDLLILDVMMPGVDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR TP+ +L+ D+V GL +GADDY+ KPF +EL+ARIRA++RR+ Sbjct: 64 LGVCRVLRAEGDRTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLRRA 123 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G A+ LI GDL ++ A+ V G + L+ E+ ++ELL+ L Sbjct: 124 APTTGEGAAEPLIQVGDLRIDPGARRVWRAGREVELSKTEFDLLELLARNAGIVLDHSTI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ PE K + V+I LR+KL G I+TV G GY LR Sbjct: 184 YDRIWGYDFGPESKNLAVYISYLRRKL-EPEGTTPLIQTVRGVGYTLRPK 232 >gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 235 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 11/227 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD ++A + L E +N+ GE+G+ + + +D +++DL + + G EV Sbjct: 5 ILLIEDDLSIAEMLLKALTKEGYNLTTASDGEEGLNAFERHTYDLVLVDLMMPKVDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R + + P+ I+S S DK GL GADDY++KPF+ E+ ARI++ +RRS + Sbjct: 65 IRQIR-TRSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTTY 123 Query: 123 AQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ ++ G+L ++ D TV G+ I LT KE +++L + N TK Sbjct: 124 ARLQQQEEQPQAQVLTYGNLRIDFDHFTVIRDGNEIQLTAKESDILKLFASNPNRVFTKA 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +I+V I +LR+K+ +I+T+WG GY Sbjct: 184 QLYGFIWKDDYMGDENVINVHIRRLREKIEEDPSHPVHIKTLWGIGY 230 >gi|291617065|ref|YP_003519807.1| PhoP [Pantoea ananatis LMG 20103] gi|291152095|gb|ADD76679.1| PhoP [Pantoea ananatis LMG 20103] gi|327393515|dbj|BAK10937.1| transcriptional regulatory protein PhoP [Pantoea ananatis AJ13355] Length = 222 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MR+L++ED+ L H + + L+ V D ED E F + D ++DLGL D Sbjct: 1 MRVLVVEDNALLRHHLSVQLREMGHQV---DAAEDAKEADYFLQEHLPDIALVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + P+ +L+ + KV L++GADDY++KPF+ EE+ AR++A++R Sbjct: 58 DGMSLIRRWRNDAVRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ GHA +I V+L + + + + LT EY ++E L ++K+ + Sbjct: 118 RNSGHASQIIAMAPFQVDLSRRELTIHDQPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIL-ALHSDEVIATVRGQGY 218 >gi|322804625|emb|CBZ02177.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 228 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ LK NF+V + GE+GIE + ++ + ++LD+ L + G E Sbjct: 3 KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + +L+ S DKV GL+ GADDYI KPFN EL RI+AI+RR Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S +I G ++L +K + I +T EY ++++ ++ L+ + Sbjct: 123 VKESNDNIITGGPFKIDLYSKKIYKNKEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + KI+DV I +LR K+ +I+TVWG GY Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGY 223 >gi|229187336|ref|ZP_04314479.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228596040|gb|EEK53717.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 222 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I L E + +G+ + ++D IILD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSGLTQEGHFILKLHNENEGLNIAYEQDWDIIILDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R+ K TP+ I++ S ED V GLQ+GADDYI KPF KEELVAR++AI+RRS + Sbjct: 61 CRQIRLVK-KTPIIIVTSNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDYN 119 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQNETNFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GYDVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 222 >gi|89074900|ref|ZP_01161350.1| hypothetical DNA-binding response regulator [Photobacterium sp. SKA34] gi|89049297|gb|EAR54860.1| hypothetical DNA-binding response regulator [Photobacterium sp. SKA34] Length = 225 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 126/227 (55%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD I L+ F V + G G+ + E+ IILD L + G Sbjct: 1 MKVLVIEDDVTTREFIAQGLREHGFVVDEAEDGHQGLMMATSCEYQLIILDRMLPILDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL ALR + TP+ ILS M S+ED+V GL +G+DDY++KPF EL+AR +V+R Sbjct: 61 KVLAALRATENETPILILSAMDSVEDRVAGLTAGSDDYLTKPFALAELIARANILVKR-- 118 Query: 121 GHAQSLIVTGDLS---VNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H S+ ++ + S + LD K+ V +G R ++L KE+ +++ L + +++ Sbjct: 119 -HQSSVNISSEYSYDDLRLDIKSHRVWRGSRLLNLQQKEFLLLQYLMEHAESVVSRMSLF 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +P+ +IDV I LRKKL G + I TV G GYVLR Sbjct: 178 ESVWSYHFDPKTNVIDVHIANLRKKLEE-GGETSLIHTVRGAGYVLR 223 >gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter ruber DSM 13855] gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein [Salinibacter ruber M8] gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM 13855] gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein [Salinibacter ruber M8] Length = 247 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 122/218 (55%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ +A ++ L E + V + G G++ + D ++LD+ L D+ G EV Sbjct: 7 LLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 LR+ + P+ +L+ + ++ED+VRGL++GADDY+ KPF +EL+ARI A++RR R Sbjct: 67 CERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDRP 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L ++ A+T G + LT E+ ++ L R L+++ ++ Sbjct: 127 SEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWGH 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +IDV++ +R+KL + G + IETV G GY Sbjct: 187 DFDRGTNLIDVYVNYVRRKL-DEVGCEAPIETVRGIGY 223 >gi|186687169|ref|YP_001870312.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186469472|gb|ACC85271.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 228 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL+IEDD+ +A + LK ++ +V D+ DGIE ++ + +D I+LDL L + Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQH---HVVDIACDGIEGWEYAQAGNYDLILLDLMLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G + + LR + + + +L+ + +K+ GL +GADDY+ KPF+ EEL ARIRA+ R Sbjct: 58 DGITLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+ Q +++ GDL ++ V + LT KEY ++E LT+ L+ Sbjct: 118 RSQETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L++ + + I LRKKL +++IETV+G GY L Sbjct: 178 LWEFDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRL 221 >gi|332308774|ref|YP_004436624.1| two component heavy metal response transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176103|gb|AEE25356.1| two component heavy metal response transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 228 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ ++ L F V + G DG F+ IILD+ L D+ G+ Sbjct: 1 MRLLIVEDETKTGDYLKQGLSEAGFQVSLARNGLDGHHFAMTESFEVIILDVMLPDVSGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +LR A TPV LS S++D+V+GL+ GADDY+ KPF E++AR+R ++R R Sbjct: 61 RILESLREANNDTPVLFLSARDSVDDRVKGLELGADDYLVKPFAFSEVLARVRTLIR--R 118 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G AQ + T DL +++ + V G RI L+ KE+ ++ELL R+ L + + + Sbjct: 119 GGAQKVEDTFKVADLEMSIPQRKVTRTGKRILLSNKEFSLLELLLRREGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +IDV I +LR K+ + G K I TV G GY L Sbjct: 179 VWDMNFDSDTNVIDVAIRRLRGKVDDEFGLK-LIHTVRGMGYKL 221 >gi|326388965|ref|ZP_08210547.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206565|gb|EGD57400.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 244 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L + L + V D G + D I+LDL + G Sbjct: 10 RILVVDDDPELRALLTRFLGEHGYAVRAVDGGRAMDSALQRDPADVIVLDLMMPGEDGLA 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR TPV +L+ D+V GL+ GADDY+ KPF ELVARI A++RR Sbjct: 70 VLRRLRAGGDPTPVIMLTARGDAIDRVLGLEMGADDYLGKPFLPRELVARISAMLRRLGP 129 Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R A+ ++T G ++N A TV +G + L+ +EY + L+ L++ + Sbjct: 130 DRTLARDEVLTVGPFTINFSAMTVAREGQPLVLSSREYALFAALARSAGRPLSRAQLIER 189 Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 GRD E + IDV + +LR+ + + ++ TVWG GYVL +NA+D Sbjct: 190 AL-GRDAEVTDRAIDVQVARLRRAIGDDPSDPRHVRTVWGVGYVLADNAED 239 >gi|295093683|emb|CBK82774.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 222 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K L I L E +NV G+ ++ + +D I+D+ + + G Sbjct: 1 MRVLVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDYMEAENYDGAIMDIMIPNKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R A I PV L+ + +D VRGL +GA DY++KPF EL+AR+R ++R Sbjct: 61 TVLREMRNAGIQVPVLFLTAKTETQDIVRGLDAGASDYMTKPFEFSELMARLRVMLRTQN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++I G L V+++ + G I LT +EY ++E L+ +N +T+E ++++ Sbjct: 121 PVNENVITCGSLVVDMNNRQAIRDGKVIDLTVREYAILEYLARNRNVVVTREQIRVNIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ +IDV+I LR+K+ + K I T+ G GY L Sbjct: 181 IDDDVNSNVIDVYIRYLRRKIDDNYEEK-LIHTIRGVGYKL 220 >gi|225574100|ref|ZP_03782711.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM 10507] gi|225038700|gb|EEG48946.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM 10507] Length = 242 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 9/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A I L L E ++ + + GE + + + D I+LDL L + G++ Sbjct: 16 KILIVDDDNNIAELIALYLTKECYDTCIVNDGEQALREFEHFRPDLILLDLMLPGMDGYQ 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +LS DKV GL+ GADDYI KPF+ +ELVAR++A++RR Sbjct: 76 VCREIRHTS-DVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRFHV 134 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + DL++NL +V R+ + KE +++ L+ N T+E L Sbjct: 135 KQPAAAPDEKCVSYPDLTINLTNYSVIYMNERVDMPPKELELLYFLASSPNQVFTREQLL 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +H++ + + +DV I +LR+K+ + K I TVWG GY Sbjct: 195 DHIWGYEYIGDTRTVDVHIKRLREKIKD--HDKWSIATVWGIGY 236 >gi|311693011|gb|ADP95884.1| DNA-binding heavy metal response regulator [marine bacterium HP15] Length = 228 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 12/225 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 M++L++ED+ LA I L E+F V D+ ++G E F E + AIILD+GL D Sbjct: 1 MKVLIVEDNAILAEKISGWLAKEHFTV---DVAKNGAEANSFVETCSYQAIILDIGLPDQ 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +++ R + IL+ S+ ++V GL +GADDY+ KPF +EL AR+ AI+R Sbjct: 58 NGLSLMQKWRSGGKDEAILILTARSNWTERVEGLNAGADDYLPKPFEFDELKARLSAIIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R G A I+ +N +T+ H+ LT EY++++ L + +++ + Sbjct: 118 RKDGRATDKIIVDGFQLNATYRTLTTPDHKEFRLTATEYRLLQCLLRSPDRVFSQDELVE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY+ P ++ V+I +LRK L GK I+T+ G+GY Sbjct: 178 ALYNIERCPTRNVVQVYIARLRKIL-----GKKRIKTLRGQGYFF 217 >gi|294633188|ref|ZP_06711747.1| DNA-binding response regulator TcrA [Streptomyces sp. e14] gi|292830969|gb|EFF89319.1| DNA-binding response regulator TcrA [Streptomyces sp. e14] Length = 222 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 19/226 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD+ LA +E +L+ E + V V G+ G+ L +D ++LD L + G + Sbjct: 7 RLLLVEDDRELAAMLETVLRDEGYTVDVATDGQQGLHLGLTRRYDVLVLDRRLPVLDGLD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + TPV +L+ M ++ D+V GL +GADDY+ KPF+ +EL AR+RA+ RR Sbjct: 67 LLSRLRSRALRTPVLLLTAMGTVHDRVDGLDAGADDYLVKPFDLDELSARLRALCRR--- 123 Query: 122 HAQSLIVTGDLSVN-----LDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +L VT LS+ + + VE+ G RI L +E+ ++ L+ R + T+ Sbjct: 124 ---ALDVTDVLSIGSGRLLVAHRAVELADGERIALAAREFALLWALASRPHVVYTRAELR 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + P I+D ++ LR+KL G + TV G GY L Sbjct: 181 RTVFE--EAPASSIVDTYVYYLRRKL-----GTKVVRTVRGLGYRL 219 >gi|291086571|ref|ZP_06356184.2| QseB [Citrobacter youngae ATCC 29220] gi|291067819|gb|EFE05928.1| QseB [Citrobacter youngae ATCC 29220] Length = 268 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + ++ L F++ G G E +DA+ILDL L I G Sbjct: 50 MRILLVEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLPGIDGR 109 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 110 DILREWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 169 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G+++++ A G + L KE+ ++ELL K L +++ LY Sbjct: 170 GQASNTLRHGEVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLYT 229 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V + LR+KL G ++I TV G GY L Sbjct: 230 WDENVSSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTL 265 >gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 225 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 116/218 (53%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ++ P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRGEGLAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|227506135|ref|ZP_03936184.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197242|gb|EEI77290.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 268 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPELDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 102 VCRRIRTFSDCY-ILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 VT GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 161 STTPPQVTTPLSVGDLILDPIAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263 >gi|254471766|ref|ZP_05085167.1| two-component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] gi|211958968|gb|EEA94167.1| two-component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] Length = 223 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 ++IEDD+ A + LK + D GEDG+EL +D +++D L G ++ Sbjct: 1 MIIEDDREAADYLLKALKEAGHSPDHADNGEDGLELAISNTWDVLVVDRMLPKRDGLSII 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-H 122 LR + TPV ILS +S ++D+V GL++G DDY+ KP+ EL+AR+ + RR G Sbjct: 61 ETLRASGDETPVLILSALSQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLSRRKAGPQ 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ + DL ++ A +V G I L +E++++E L +T+ M L +++D Sbjct: 121 VETKLQVSDLVLDRLAHSVTRAGQEIVLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYH 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNY--IETVWGRGYVLRENA 225 +P+ +IDV I +LR K+ G ++ + TV G GY +R+++ Sbjct: 181 FDPQTNVIDVHISRLRSKIDK---GFDFPLLHTVRGAGYSIRDSS 222 >gi|251796140|ref|YP_003010871.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543766|gb|ACT00785.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 229 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+KA+A L+S F V + G+ G++ +D IILD+ L + GFE+ Sbjct: 4 ILIIEDEKAIAELERDYLESHGFAVEIEGRGDIGLQKALGGSYDLIILDVMLPKLDGFEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R K + PV +++ DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 64 CRQIRQTK-NVPVLLVTAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYERL 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RG + I L +++ ++ V + LT KEY ++ LL+ N KE Sbjct: 123 TAERGESHEQIGIRGLLIDVTSRRVTIHDREAMLTSKEYDLLLLLASHPNRVFEKEELFE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I +LR+K+ + YIET+WG GY Sbjct: 183 RIWGLDSNGDAATVTVHIRRLREKIEHDPSNPQYIETIWGVGY 225 >gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 229 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + + L+ E+F V G + ++ Y D I+LD+ L GF+ Sbjct: 4 KILVVDDDSNICELLVVYLE-EDFQVKTVFDGNNLEQVISEYRPDLILLDVMLPGKNGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R K P+ LS DKV GL+ GADDYI+KPF+ E+VAR++A++RR + Sbjct: 63 ICREIR-DKYEIPIIFLSAKGEEIDKVLGLEFGADDYITKPFSPREMVARVKAVLRRVQN 121 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + ++ L ++L+A+TV+V + LT KE+ ++ L++ T+E LN + Sbjct: 122 RSGKKRDELIFPHLVIDLEARTVQVNNSYVDLTPKEFDILVLMARHNGKVFTREEILNRI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + +D I ++R+K+ G Y+ TVWG GY Sbjct: 182 WGYDFAGETRAVDSHIKRIRQKIEKIPGAPEYLHTVWGLGY 222 >gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 230 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 126/225 (56%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DD + +++ L+ E + V+ + G + ++ + D I+LDL + +I G E Sbjct: 3 KILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKANSTKPDLIVLDLMMPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R+ P+ +L+ DK+ GL+ GADDYI+KPFN E+VARI+A++RR Sbjct: 63 VCRQIRMHS-RVPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLRRVSD 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G Q L G L +N+ TV++QG I T KE +++ LL+ T+E L Sbjct: 122 ISTDSGKQQVLKYNG-LEINIMDFTVKLQGREIPFTPKELELLWLLASNPGRVYTREQLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 ++ + + +D I ++RKK+ +A ++ I+TVWG GY Sbjct: 181 EKVWGYDYFGDSRTVDTHIKRIRKKIGSAEESTSFDIKTVWGVGY 225 >gi|291482632|dbj|BAI83707.1| hypothetical protein BSNT_00453 [Bacillus subtilis subsp. natto BEST195] Length = 230 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +++ ++ L E F + GE+GI L + +D ++LD+ L + G + Sbjct: 3 RILLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R K + PV ++S DK GL GADDYI+KPF+ EL AR++A +RR+ Sbjct: 63 FLKIIR-EKSNVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ +I L++++D +V G + LT E+Q++ L + TKE Sbjct: 122 YSAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNSKKVFTKEQIY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 182 RSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229 >gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 225 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 115/218 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRADGHAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|75812821|ref|YP_320438.1| multi-component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705577|gb|ABA25249.1| multi-component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 725 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 71/222 (31%), Positives = 119/222 (53%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++E+D+ A ++ L ++ F V +EL + E+D I+LD+ L D G Sbjct: 1 MKLLIVENDRDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR P+ +L+ + D++ G ++GADDYI+KP+ EL+ARIRA++RR Sbjct: 61 RLCRQLRTQNQQEPILLLTRKVNPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ + V QG +HLT KEY+++EL + L+ + Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRRIFDRRTLLDRICS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P + I I LR+KL A + IET++G GY L+ Sbjct: 181 IDECPGEEAITTQIRGLRRKLQMAGLNSDPIETLYGLGYRLK 222 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 14/119 (11%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDI--P 58 R+L+++DD AL +E L+ F V T L + +F+++ +A DL L D+ P Sbjct: 607 RLLIVDDDPALLSILEAQLQPWGFQV--TTLADSS----QFWQYLEATTPDLLLLDVAMP 660 Query: 59 GFEVLRALRVAKIST-----PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 GF + +V K PV +LS + + R L +GADDYI KP + +L+ RI Sbjct: 661 GFSGIELCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 719 Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVY---VTDLGEDGIELCKFYEFDAIILDLGL--TDI 57 +LLI+DD L ++ + N++++ VTDL L ++ DAIILDL T Sbjct: 483 VLLIDDDTDLIERMQA--NASNWSIHLETVTDLTLARQRL-QYLTPDAIILDLTFPNTTE 539 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L L+ + PV +L+G+ + +V + GA+ ++ KP E+ + ++ Sbjct: 540 SGLTLLAQLKHQFSTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLH 599 Query: 118 R-SRGHAQSLIVTGD 131 R +A+ LIV D Sbjct: 600 RIDTINARLLIVDDD 614 >gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 225 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D++ L ++L L E + V GE+G+E K +D +ILDL L I G + Sbjct: 4 ILIIDDEEMLVKGLKLSLIQEGYYVDCAYDGEEGLEKIKNGNYDLVILDLMLPKIDGLTL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R + P+ +L+ DK+ G++ GADDY++KPFN EL+ARIRA+ RR+ Sbjct: 64 CKEVRSFS-NIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTTP 122 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I GD+++N+ K V+ G I LT KE++++ LL+ +K+ ++ ++ Sbjct: 123 YVKKHDVIKLGDITINVPDKIVQKNGKDIDLTNKEFELLVLLASNPGKLYSKDKLMDLIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++V I KLR+K+ + +I T WG GY ++ Sbjct: 183 GFDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYMK 225 >gi|260888658|ref|ZP_05899921.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Selenomonas sputigena ATCC 35185] gi|330839931|ref|YP_004414511.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] gi|260861590|gb|EEX76090.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Selenomonas sputigena ATCC 35185] gi|329747695|gb|AEC01052.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] Length = 234 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDDKA+A L++ +F+V + G++G E +FD I+LDL L GF Sbjct: 3 RILIIEDDKAIAELERDYLEANDFSVEIISDGKNGEEKALAEDFDLILLDLMLPSADGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R K TP+ ++S DKVRGL GADDYI KPF+ EL AR++A + R Sbjct: 63 VCRAIRQKK-DTPILMVSARQEEIDKVRGLGLGADDYIVKPFSPNELTARVKAHIARYER 121 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I TG L + +A+ V G + LT +E+ ++ + +K+ Sbjct: 122 LTQKTVQKSDSIFTGGLEICPEARRVFTDGKEVSLTRREFDLLLFFAENPGIAFSKDKLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + + V I ++R+K+ YIETVWG GY Sbjct: 182 DRIWGMDALGDTATVMVHINRIREKIEPNPATPVYIETVWGVGY 225 >gi|226304507|ref|YP_002764465.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183622|dbj|BAH31726.1| putative OmpR family two-component response regulator [Rhodococcus erythropolis PR4] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA +I L +E F V G+DG + EFD I+LD+ L G+ Sbjct: 1 MRVLVVEDEVRLAETIRRGLVAEGFVTAVELNGDDGFAIACSDEFDVIVLDIMLPGKHGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR + TP+ +LS D GADDY+ KPF+ +AR+RA+VRR Sbjct: 61 DIVRDLRARGVWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVFLARLRALVRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ GDLS++ V G + LT +EY ++E L +TK + ++D Sbjct: 121 PQRPSILTVGDLSLDPAKHQVIRAGIELTLTPREYSVLEFLMRNNGVVVTKTEIVRSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + I++V+I LRKK+ + G + IET+ G GY Sbjct: 181 TNYEGDENIVEVYIGYLRKKV-DLPFGTHSIETIRGIGY 218 >gi|224537739|ref|ZP_03678278.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus DSM 14838] gi|224520662|gb|EEF89767.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus DSM 14838] Length = 225 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 125/221 (56%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ +A IE L+ V V G DG +L + FD ++LD+ + + G + Sbjct: 3 KILLVEDEVNIASFIERGLQEFGHTVSVAYNGADGWQLAQDEPFDLLVLDIIMPKMNGLD 62 Query: 62 VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R R + +PV +L+ + + +D V+GL +GADDY+ KPF+ +EL ARI A++RRS+ Sbjct: 63 LCRQYRQLYGYDSPVIMLTALGTTDDIVKGLYAGADDYLVKPFSFQELEARITALLRRSK 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S +V GDL ++ + + H + LT KEY+++E + L++ L H++D Sbjct: 123 EKRTSELVCGDLILDCNTRRARRGDHEMELTVKEYRLLEHFMNNQGVVLSRVNLLKHVWD 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV++ LR K+ K I TV G GY++ Sbjct: 183 KNFDTNTNVVDVYVNYLRTKIDKDYENK-LIHTVVGLGYIM 222 >gi|153953290|ref|YP_001394055.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219853922|ref|YP_002471044.1| hypothetical protein CKR_0579 [Clostridium kluyveri NBRC 12016] gi|146346171|gb|EDK32707.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219567646|dbj|BAH05630.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 225 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 130/228 (57%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG- 59 MR+LLIED+ L+ ++ +LK N+NV D DGI+ + E D + + +PG Sbjct: 1 MRLLLIEDEVMLSEALVYILKKNNYNV---DSAYDGIKGQEMAEIDIYDIIILDRMLPGK 57 Query: 60 --FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 EVL+ +R I TPV IL+ M SI +V GL GADDY+ KPF+KEEL+ARIRA+ R Sbjct: 58 DGLEVLKHIRNRGIRTPVIILTAMDSISSRVEGLDQGADDYLIKPFSKEELLARIRALGR 117 Query: 118 RSRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R Q I L+ + ++ + +++ LT KE Q++ELL+ KN LTK+ L+ Sbjct: 118 RHIDFIQCGTIQLASLTFDPLRGELQYKENKVKLTSKESQLLELLARNKNQVLTKDQILD 177 Query: 177 HLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E+ I+V+ LRKKL IET+ G GY L+E Sbjct: 178 RVWGPDSDVEMNNNIEVYFSYLRKKLRR-LNCNVIIETIRGIGYCLKE 224 >gi|116622737|ref|YP_824893.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225899|gb|ABJ84608.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 250 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 118/221 (53%), Gaps = 8/221 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD L + F V G G+ FD IILD+ L + GFEV Sbjct: 27 ILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGFEV 86 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + +TPV +L+ S D+V GL SGADDY+ KPF +EL+ARIRA++RR+ GH Sbjct: 87 LRQLR-KRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRT-GH 144 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ + L ++ A+ V G I +T E+ ++E+L T+T++ L Sbjct: 145 TDAAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELTAVL 204 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 Y P + +DV I LRKKL ++ I T+ G GY Sbjct: 205 YQRPATPYERSLDVHISHLRKKLER--DDRSVIRTIRGVGY 243 >gi|319442620|ref|ZP_07991776.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Corynebacterium variabile DSM 44702] Length = 225 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++D+ LA + L++E V V + GE G+ + ++DAI+LD+ + + G+ Sbjct: 1 MRILVVDDEVRLADGVRRGLEAEGMVVDVVNDGETGLAMASDADYDAIVLDVMMPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 V ALR TPV L+ D+V GL +G DD+++KPF+ LVAR+RA+VRR S Sbjct: 61 RVCEALREDGNWTPVLFLTAKDGEWDEVEGLDTGGDDWLTKPFSYPVLVARLRAMVRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 RG + ++ GDL ++ A+ I LT +E +++ L +TK+ L +++ Sbjct: 121 RGRPE-ILSAGDLRLDPAARQAYRSDDEIPLTARELAVLDFLLRHAGEVVTKQEVLANVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G + + I++V+I LR K+ G+ I TV G GY L N Sbjct: 180 GGSFDGDTNIVEVYIGHLRAKVDRPF-GRAAIGTVRGAGYRLDRNG 224 >gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 230 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 130/228 (57%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+A+A L++ ++ V + + GE G++ +F I+LD+ L GF+ Sbjct: 3 RILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----R 117 V R LR +K + P+ ++S DK+RGL GA+DYI KPFN EL+AR+++ + R Sbjct: 63 VCRNLRASK-NVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121 Query: 118 RSRG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++G ++L+ +L ++L++ V + G + L KE++++ L+ N +K+ Sbjct: 122 LTQGAQKKENLLQIENLMIDLNSHEVFLDGESLVLPNKEFELLVFLAKNPNIVFSKDQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E+ + V I ++R+K+ + +IETVWG GY R+ Sbjct: 182 EKIWGLDAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRFRK 229 >gi|239917967|ref|YP_002957525.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839174|gb|ACS30971.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 117/218 (53%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ALA I ++L+++ F G + D ++LDL L I G E Sbjct: 5 KILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRERPDLVLLDLMLPGIDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D VRGL+SGADDY+ KPF ELVAR+RA +R Sbjct: 65 VCRLIR-AESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL +++ V G I LT E+ ++ L+ R T+EM L ++ Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRGGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + + ++++V + +LR K+ + TV G GY Sbjct: 184 RHQADTRLVNVHVQRLRSKVEPDLENPCVVLTVRGVGY 221 >gi|70729941|ref|YP_259680.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68344240|gb|AAY91846.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 227 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL IEDD A I L S +V D G +G+ ++D I LD L ++ G Sbjct: 3 RILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLVRAVSGDYDLITLDRMLPELDGLA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 ++ LR +STP+ ++S +S ++++VRGL++G DDY++KPF +E+ AR+ ++RR Sbjct: 63 IVTTLRTIGVSTPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRKNT 122 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + SL V DL +NL ++ + L EY+++E L L++ M + Sbjct: 123 VKDFDTSLRV-ADLELNLISREATRADQLLSLLPTEYKLLEFLMRNTGQILSRMMIFEEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +P +IDV I +LRKK+ + G I TV G GYV+ E Sbjct: 182 WGYHFDPGTNLIDVHIGRLRKKI-DPPGMTPLIRTVRGSGYVIAE 225 >gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 228 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A +EL L E + V V G G E D IILDL L ++ G E Sbjct: 4 RILVIEDEVKIARFLELELTYEGYAVEVAHDGRSGYEKAAAGNVDLIILDLMLPELSGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V R +R + P+ +L+ + DKV GL SGADDY++K F EEL+ARIR I++R Sbjct: 64 VCRRVR-KESDVPIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVILKRKSK 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + ++I G L + D V +G I L+ KE+++++ L K L++E L+H++ Sbjct: 123 KEGSSAVIAAGRLVLLRDEHRVTFEGKEISLSKKEFELLKYLMENKGIVLSREKILDHVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + DV+I LR K+ + +I TV G GY+ +++ Sbjct: 183 GYDYYGDTNVTDVYIKYLRNKIDQKFDVR-FIHTVRGVGYIFKQD 226 >gi|160896591|ref|YP_001562173.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160362175|gb|ABX33788.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] gi|222874799|gb|EEF11930.1| predicted protein [Populus trichocarpa] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 10/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD+ALA ++ L+S+ F + V L + L + A++LDL L+D G Sbjct: 1 MRILLVEDDEALAQAVGSYLRSKAFLIDSVPSLAQARACLAG-ASYAAVLLDLHLSDGDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ LR + +L+ + D++RGL +GADDY+ KP++ EEL+AR+RA+ RR Sbjct: 60 LALMPTLRRLEQPPVTIVLTARDQVSDRIRGLDAGADDYLVKPYDPEELLARLRAVSRRG 119 Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G +++ G L ++L + V G + LT KE+ ++ +L++ T+E L+ Sbjct: 120 GGMQAGQDAVLRMGTLEIDLAREMVRDAGRTLLLTPKEWALLRVLTVHPGRLYTREHLLD 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY E + ++VFI +LR+KL G+ I TV G GY L Sbjct: 180 ALYGFDAEADSNTLEVFISRLRRKL-----GRERILTVRGTGYRL 219 >gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] Length = 240 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 15 RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLR L+ I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ + Sbjct: 75 VLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A+ S + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 135 GSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKIDT--GDKRLLHTLRGVGYVLRE 238 >gi|309388597|gb|ADO76477.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 225 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 121/219 (55%), Gaps = 4/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD + + ENF V+V G+ G+E E D IILDL L G + Sbjct: 5 KILIIDDDLQITKILRDYFNYENFEVFVAHDGQKGLEKINNLEIDIIILDLMLPKKNGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 + R L+ P+ ILS + D+++GL+ GADDY++KPF+ +ELV R++ +++R + Sbjct: 65 ICRQLKPHN-KIPIIILSAKNRENDRIKGLELGADDYVTKPFSPKELVLRVKNVLKRINN 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + DL +N + + V+V+ I L KE+ ++ L+ T ++E L ++D Sbjct: 124 DQDQNELSFPDLIINKEQRLVKVKKEEIALAPKEFDLLWQLASSPKTVFSREKLLELVWD 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +D I +R KL G NY++TVWG GY Sbjct: 184 FDYFGGIRTVDTHIKSIRNKLGAEVG--NYVQTVWGIGY 220 >gi|300702865|ref|YP_003744466.1| response regulator, chey family [Ralstonia solanacearum CFBP2957] gi|299070527|emb|CBJ41822.1| putative response regulator, CheY family [Ralstonia solanacearum CFBP2957] Length = 235 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL+ED++ LA + L +F V + DG+ F EFDA++LDL L Sbjct: 1 MRILLVEDEEELAAWLSRALAQSSF---VVERAADGLAAEAFLASGEFDAVVLDLRLPRK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VL +R TPV IL+ +++++VRGL +GADD+++KPF EL AR+ A++R Sbjct: 58 DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG A + G L + K + G + LT +E+ + L + ++K + Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLAGEALSLTPREHAALSALLHKTGQPISKVHLFDK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + ++V + +LRKKL AG I TV G GY+L Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGSGVQIVTVRGLGYLL 218 >gi|226951189|ref|ZP_03821653.1| heavy metal response regulator [Acinetobacter sp. ATCC 27244] gi|226838068|gb|EEH70451.1| heavy metal response regulator [Acinetobacter sp. ATCC 27244] Length = 235 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRILL+ED++ ++ L Y+TD DG+ E+D IILD+ L + Sbjct: 9 MRILLVEDEQKTGDYLKQGLSEAG---YITDWVTDGLSGKHQALSEEYDLIILDVMLPKL 65 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ ++ +R + + P+ LS IED+V+GL GADDY+ KPF EL+ARI++++R Sbjct: 66 DGWNIIYDIRKSGKTMPILFLSARDQIEDRVKGLDLGADDYLVKPFAFAELLARIKSLLR 125 Query: 118 RSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + S LI DL ++L + V G RI LT KE+ ++EL R+ L + + + Sbjct: 126 RGQQKEDSNLITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIAS 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +++V I +LR K+ + K I+ + G GYVL Sbjct: 186 QIWDMNFDSDTNVVEVAIKRLRSKIDSNFSPK-LIQNIRGMGYVL 229 >gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens TC1] gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens TC1] Length = 239 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G + + + D +LD+ L D+ GF Sbjct: 12 KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHSPDLAVLDVMLPDMDGFT 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A PV L+ EDKV GL G DDY++KPF+ +E+VARIRA++RR++ Sbjct: 72 VTRRLRAAGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 131 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++I DL ++ DA V G I L+ E++++ L L N L+K L+H++ Sbjct: 132 LEDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I++ +I LR+K+ I+T G GYVLR K Sbjct: 192 EYDFNGDASIVESYISYLRRKVDIDPDAAALIQTKRGVGYVLRTAEK 238 >gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 15/229 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD A++ + L+ E + V V + G + + D I+LDLGL ++ G EV Sbjct: 4 VLLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDVDLIVLDLGLPEMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR S PV +L+ + D V GL +GADDY++KPF EL+AR+RA++R RG+ Sbjct: 64 CRRLRADGKSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR--RGN 121 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMFL 175 L TG V +D ++ HR + L+ KE++++ +L +T+E + Sbjct: 122 VDQL-TTGAHGVKID-----IESHRAWLGEEELTLSAKEFELLRVLVRDAGRVVTREEIM 175 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D K +D+ I LRKKL + A YI TV G G+ +N Sbjct: 176 RQVWDTTWWTSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 224 >gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa E681] gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa E681] Length = 226 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+ED+ + I K N+ VY G+D + + D IILD+ + ++ G+E Sbjct: 4 RVLLVEDEIRIREVIADYFKQNNWEVYEAGNGKDALIWLDSVQPDLIILDIMMPELDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R ++ P+ +L+ S +DK+ G + GADDY++KPF+ + L+AR A+++R G Sbjct: 64 VCRQVR-SRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEG 122 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H Q ++ G +N A +EV + LT KEY+++ LL K ++++ LN + Sbjct: 123 HVQPESHILRFGSAILNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVISRDTILNRV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +++D I KLR KL + +I TV+G GY E Sbjct: 183 WGIDFEGDTRVVDTHIKKLRSKLGRES---RHIRTVFGTGYRFEE 224 >gi|260462374|ref|ZP_05810582.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259031868|gb|EEW33136.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 241 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A ++ +V GE G L ++D +++D + G Sbjct: 18 MKILVIEDDREAADYLQKAFNEAGHTAHVAGDGETGFALADTGDYDVMVIDRMMPRRDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 V+ LR +TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ + RR S Sbjct: 78 SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 137 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ + +V I L +E++++E L +T+ M L +++ Sbjct: 138 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 197 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV + +LR K+ K + TV G GY+L+ Sbjct: 198 DYHFDPQTNVIDVHVSRLRGKIEKGF-DKPILHTVRGAGYMLK 239 >gi|238764767|ref|ZP_04625710.1| Two-component system response regulator [Yersinia kristensenii ATCC 33638] gi|238697058|gb|EEP89832.1| Two-component system response regulator [Yersinia kristensenii ATCC 33638] Length = 239 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + + L E FN + G++GI E+ A+ILD+ L D+ G Sbjct: 13 MKILLVDDDVELGNMLREYLSGEGFNAELVLTGKEGIAAALSGEYTALILDIMLPDMSGI 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R K P+ +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 73 DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 131 Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H S+I DL++N ++ E QG LT E+ ++ELL +TK+ Sbjct: 132 EHPDAPSADDSVITHSDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDEL 191 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + +DV I +R+KL+ G IETV GY +R Sbjct: 192 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNTLNIETVRSIGYRIR 239 >gi|297197902|ref|ZP_06915299.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197717155|gb|EDY61189.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 231 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD A+ + L L+ +N +V T GE+G++ + + D ++LDL L + G E Sbjct: 3 RVLLIEDDPAVREGVALALRRQNHDVDATATGEEGMDRLRAFRPDIVVLDLMLPGMTGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ + + D V GL++GADDY+ KP L ARIRA++RR+ G Sbjct: 63 VCRGIRAVDQTLPIIMATARGEEVDIVVGLEAGADDYVVKPVLARVLDARIRAVLRRAAG 122 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + GDL+V+ TV + G I L E +++ LS +++ L Sbjct: 123 GTPGAEGLPKIDTYGDLAVDRAGLTVALNGEPIALAPSELRLLLTLSASPGQVFSRQQLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + +++D + +LR K+S YI TV G GY Sbjct: 183 EAVWEHDYHGDARLVDACVKRLRTKMSEPPRAPRYIHTVRGFGY 226 >gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] Length = 235 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D++ + + L E F+ + G + L + FD I+LD+ L + G E Sbjct: 4 QVLLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR++G Sbjct: 64 VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + G L V + V + LT KE++++ L N TLT+E Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234 >gi|161508040|ref|YP_001578007.1| two-component response regulator [Lactobacillus helveticus DPC 4571] gi|160349029|gb|ABX27703.1| Two-component response regulator [Lactobacillus helveticus DPC 4571] gi|323467275|gb|ADX70962.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Lactobacillus helveticus H10] gi|323467318|gb|ADX71005.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Lactobacillus helveticus H10] Length = 228 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L +N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG++ I+TVWG GY Sbjct: 180 FERVWQQESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGY 224 >gi|325681332|ref|ZP_08160858.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] gi|324106822|gb|EGC01112.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] Length = 234 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 13/228 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTD 56 ++L+ ED+ ++ + + L + V + GED + K YE FD +LD+ + Sbjct: 3 KVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDAL---KAYEENEGAFDVALLDIMMPG 59 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 I G +V + +R + +LS S DK+ L SGADDYI+KPF+ EL+AR+ A+ Sbjct: 60 IDGMQVCKKIREKNSGMGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVC 119 Query: 117 RRSRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 RR A S I +G +NL ++TV G +I LT EYQ++E +N L + Sbjct: 120 RRVNRSAVKPEEASTITSGPFVLNLKSRTVLKNGRQIDLTQVEYQIMEYFFKNQNAALDR 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LNH++ + KI+DV I ++R K+ + YI T+WG GY Sbjct: 180 SSILNHIWGESYYGDDKIVDVNIRRIRMKIEDEPSNPKYILTIWGFGY 227 >gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284] gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 233 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 129/232 (55%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++V GE+ +E + E D I+LDL L I G E Sbjct: 3 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLMLPKIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VARQVR-AKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 QS I G L +N D+ +V G ++ LT +E++++ L+ + +T+E L Sbjct: 122 FQQSNEEVKNNIKIGPLVINSDSYSVTRDGAQLDLTHREFELLHYLAQHTDQVMTREHLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + T G GY LR D Sbjct: 182 QTVWGYDYFGDVRTVDVTVRRLREKIEETPSNPQILVTRRGVGYYLRNPETD 233 >gi|21325738|dbj|BAC00359.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 252 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 26 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 85 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 86 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 144 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 145 STTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLIT 204 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 205 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 247 >gi|65322038|ref|ZP_00394997.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 232 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 6 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 66 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 124 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 125 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 184 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 228 >gi|257067507|ref|YP_003153762.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558325|gb|ACU84172.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 229 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 129/233 (55%), Gaps = 13/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED+ +A +E LK+ F V + G ++L + D +ILD+GL + GF Sbjct: 1 MRILIAEDEARIARFMERGLKANGFATTVVEDGISALDLASAGDVDLLILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ALR + P+ +++ + ++D V+GL+ GA+DYI+KPF EEL+AR++ R + Sbjct: 61 QVLKALRGMDVQIPILMVTARTGVDDTVQGLEDGANDYIAKPFRFEELLARVKLRAREAA 120 Query: 121 GHAQS----LIVTGDLSVNLDAK----TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S ++ GDLS++L + T E Q + L+ +E+ M + N LT++ Sbjct: 121 SGPGSVSADVLELGDLSLDLRTRIASCTAEGQQRSVELSSREFTMARVFLENPNQVLTRD 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + L+ ++ + ++DV++ LR KL G + TV G GY L + A Sbjct: 181 LLLSKVWGYDYDGASNVVDVYVGYLRGKL-----GAPRLVTVRGAGYKLVDPA 228 >gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] Length = 245 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 131/233 (56%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ I+ L+ E + V V GE+ ++ + D I+LDL L I G E Sbjct: 14 KVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKIDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R AK STP+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 74 VAKQVR-AKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDA 132 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I GDL+++ DA TV +G I+LT +E++++ L+ + +E Sbjct: 133 TVSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 192 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++ T G GY L +D Sbjct: 193 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYLANPNQD 245 >gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parasanguinis F0405] gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parasanguinis F0405] Length = 233 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 126/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K ++ I+ + E + V G + +E+ D IILDL L +I G E Sbjct: 3 RILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFSAENPDVIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + P+ +LS + DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VARTIRKTS-NVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + IV GDL + DA V + LT +E++++ L+ +T+E Sbjct: 122 AADPQFEKDADTEIVIGDLHILPDAFLVRKGNKELDLTHREFELLYHLATHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV + +LR+K+ + G YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232 >gi|29831606|ref|NP_826240.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608722|dbj|BAC72775.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 229 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLGIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 224 >gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 245 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 120/227 (52%), Gaps = 16/227 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD + S+ L L + V G G+EL D +++DL L DI GFE Sbjct: 20 RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R LR + P+ +++ + D V GL++GADDY++KPF +EL ARIRA++RRSR Sbjct: 80 CCRRLRRSS-DVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G A +I DL + DA V G +HLT E++++ L+ + ++E L + Sbjct: 139 AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERV 198 Query: 179 Y------DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + DGR I+DV + +LR K+ + TV G GY Sbjct: 199 WGYDYFGDGR------IVDVHVRRLRTKIEEDPAHPRILVTVRGLGY 239 >gi|332296523|ref|YP_004438446.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] gi|332179626|gb|AEE15315.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] Length = 230 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ LA ++L L+ E + V D G + I L +FD ++LDL + I GFE Sbjct: 6 RILVVEDEYNLARYLQLELEHEGYLVDTADNGYEAIGLFSEKDFDLVLLDLMIPGIDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + ++ K + IL+ +++DKV+GL GADDY++KPF EEL+ARIRA +R+ Sbjct: 66 VCKRMKAQK-DVAIIILTARDAVKDKVKGLDLGADDYVTKPFVIEELIARIRARLRKGTK 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + IV GDL ++ + V+ ++L+ KE+ +++ L+ L ++ LNH++ Sbjct: 125 DLEQ-IVVGDLVISPQTREVKRADKSVNLSKKEFDLLKYLAENVGKVLNRDTILNHVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++DV+I LR K+ + K + TV G GY L+ Sbjct: 184 DYYGSENVVDVYIRYLRAKIDDPFENK-ILHTVRGVGYALK 223 >gi|253702121|ref|YP_003023310.1| transcriptional regulator [Geobacter sp. M21] gi|251776971|gb|ACT19552.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 223 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M L++ED + A + L + V V G G+ + + ++D I+LDL L I GF Sbjct: 1 MYFLIVEDAEKTAEQLRRGLSEMSVTVDVAPDGLKGLAMARERDYDLIVLDLMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR +TP+ IL+ + D++ GLQ GADDY+ KP++ EL ARI+A++RR + Sbjct: 61 EVVKRLREGGSTTPIMILTARDEVHDRITGLQLGADDYLVKPYSFAELCARIQALLRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I DL+VN A G + LT KE+ ++ LL R ++ +++ Sbjct: 121 VVQQDEIQVADLTVNFFAHKATRAGKNLDLTPKEFALLSLLIRRAGEVQSRLRIAERVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +KI+DV + LR K+ + K I TV G GY+L + Sbjct: 181 LGFEANLKIVDVKVAALRAKV-DGPFEKKLIHTVRGLGYILEDR 223 >gi|192360483|ref|YP_001983964.1| response regulator receiver domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686648|gb|ACE84326.1| Response regulator receiver domain protein [Cellvibrio japonicus Ueda107] Length = 219 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD LA + LK F V ++ G+ + D ++LDLGL D+ G Sbjct: 1 MQILLVEDDNLLAEGMMNALKRAGFAVNLSRTGKAACTYLQAEPPDILLLDLGLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R K+ V IL+ S KV GL +GADDY++KPF +EL+AR+R + RR Sbjct: 61 DVLKFIRDKKLQVQVLILTARDSTNAKVLGLDAGADDYLTKPFALDELLARLRVLERRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I G LS+N V + G + L+ +EY +++ L T+E LY Sbjct: 121 TANTAMIHVGPLSLNTTQHLVLLNGDALVLSRREYMLLKALVENLGIIQTRESLEAKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE I+V I LRKKL N+I T+ G GYV+ Sbjct: 181 WNDEVASNAIEVHIHNLRKKLP-----LNFIRTIRGVGYVV 216 >gi|17987612|ref|NP_540246.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|225852137|ref|YP_002732370.1| transcriptional activator protein copR [Brucella melitensis ATCC 23457] gi|256044314|ref|ZP_05447218.1| Transcriptional activator protein copR [Brucella melitensis bv. 1 str. Rev.1] gi|256113151|ref|ZP_05454028.1| Transcriptional activator protein copR [Brucella melitensis bv. 3 str. Ether] gi|256264351|ref|ZP_05466883.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260563668|ref|ZP_05834154.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|265990726|ref|ZP_06103283.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265994564|ref|ZP_06107121.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|17983321|gb|AAL52510.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|225640502|gb|ACO00416.1| Transcriptional activator protein copR [Brucella melitensis ATCC 23457] gi|260153684|gb|EEW88776.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|262765677|gb|EEZ11466.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263001510|gb|EEZ14085.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263094644|gb|EEZ18423.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|326408637|gb|ADZ65702.1| transcriptional activator protein copR [Brucella melitensis M28] gi|326538359|gb|ADZ86574.1| transcriptional activator protein copR [Brucella melitensis M5-90] Length = 235 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A +E + + GE G L + +D +++D L G Sbjct: 1 MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR + TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ + RRS Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ GDL ++ T Q I L +E++++E L +T+ M L +++ Sbjct: 121 PREADTIYRVGDLELDRLTHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ + + TV G GY+L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGF-DEPLLHTVRGAGYMLK 222 >gi|154243824|ref|YP_001409397.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162946|gb|ABS70161.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 220 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 120/219 (54%), Gaps = 7/219 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LIEDD L ++ + ++ +VT L + + FD I+LDL L D G + Sbjct: 1 MLIEDDPVLGVAVRDQIVADGHGTDWVTRLADA-ADAVHAAAFDLILLDLMLPDGRGSDF 59 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR A +TPV +L+ I D++ L +GADDY+ KPF+ EL ARIRA+ RR G+ Sbjct: 60 LRTLRSAGAATPVMVLTARDQISDRIAALDAGADDYLVKPFDLCELSARIRAVGRRYAGN 119 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L+ G++ V+L A++V G + LT +E+ + E R + ++K LY Sbjct: 120 PNPLVTLGNIEVDLAARSVRRAGQAVALTAREWALFEAFVQRPHQLMSKPQLEERLYSFD 179 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E I+V++ +LRKKL G + IETV G GY L Sbjct: 180 AEVESNAIEVYVARLRKKL-----GADVIETVRGMGYRL 213 >gi|152969690|ref|YP_001334799.1| DNA-binding transcriptional regulator PhoP [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206579731|ref|YP_002239238.1| transcriptional regulatory protein PhoP [Klebsiella pneumoniae 342] gi|288936097|ref|YP_003440156.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290510851|ref|ZP_06550221.1| two-component system, OmpR family, response regulator PhoP [Klebsiella sp. 1_1_55] gi|330016190|ref|ZP_08308420.1| virulence transcriptional regulatory protein PhoP [Klebsiella sp. MS 92-3] gi|150954539|gb|ABR76569.1| response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568789|gb|ACI10565.1| transcriptional regulatory protein PhoP [Klebsiella pneumoniae 342] gi|288890806|gb|ADC59124.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289777567|gb|EFD85565.1| two-component system, OmpR family, response regulator PhoP [Klebsiella sp. 1_1_55] gi|328529475|gb|EGF56380.1| virulence transcriptional regulatory protein PhoP [Klebsiella sp. MS 92-3] Length = 223 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLQELGHQV---DAAEDAREADYYLGEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S PV +L+ +DKV L +GADDY++KPF+ EE+ AR++A++R Sbjct: 58 DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L + ++K+ + Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A ++ I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAEYPQDVITTVRGQGYLF 220 >gi|13633959|sp|Q9ZHD3|SILR_SALTY RecName: Full=Probable transcriptional regulatory protein silR gi|4206626|gb|AAD11745.1| putative transcriptional regulator responder SilR [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 228 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD + L F V D G G L E+D +ILD+ L D+ G+ Sbjct: 1 MKILIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM---FLN 176 +S + DLSV+L ++ V G+RI LT KE+ ++E + L + + F+ Sbjct: 121 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIAFFMV 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + IDV + +LR K+ N G K +TV G GY+L Sbjct: 181 WVHEFL-TADTNAIDVAVKRLRAKIDNDYGTK-LNQTVRGVGYML 223 >gi|75760731|ref|ZP_00740754.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491786|gb|EAO54979.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 7 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A I R R Sbjct: 67 ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 125 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + + T KE+ ++ N L KE Sbjct: 126 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 185 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 229 >gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074] gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074] gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 114/218 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLRGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRSDGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPPQPTATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|225028586|ref|ZP_03717778.1| hypothetical protein EUBHAL_02865 [Eubacterium hallii DSM 3353] gi|224954068|gb|EEG35277.1| hypothetical protein EUBHAL_02865 [Eubacterium hallii DSM 3353] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+ + + I LK ++ G I + D ++LDLGL D+ G +V Sbjct: 6 VLVVEDDRPIRNLIVTTLKMHDYKYLTAKNGASAIMEASSHHPDIVLLDLGLPDMEGVDV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AIV 116 ++ +R + P+ ++S S DK+ L SGADDYI+KPF+ EEL+ARIR AI+ Sbjct: 66 IKKIRTWS-NMPIIVISARSEDSDKIEALDSGADDYITKPFSVEELLARIRVTQRRLAII 124 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + S+ + G L ++ A ++G +HLT EY+++ LLS LT Sbjct: 125 QAGEEQEASIFINGQLKIDYTAGCTYLKGKELHLTPIEYKLLCLLSRNVGRVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + ++ + VF+ LRKKL G YI+T G GY Sbjct: 185 QIWGNCSQNDIASLRVFMATLRKKLEPDKNGLQYIQTHIGIGY 227 >gi|218899823|ref|YP_002448234.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903185|ref|ZP_04067319.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL 4222] gi|228910522|ref|ZP_04074336.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL 200] gi|228967768|ref|ZP_04128784.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis serovar sotto str. T04001] gi|218545601|gb|ACK97995.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791922|gb|EEM39508.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis serovar sotto str. T04001] gi|228849086|gb|EEM93926.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL 200] gi|228856467|gb|EEN00993.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL 4222] Length = 229 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A I R R Sbjct: 63 ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W] gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42] gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201] gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1] gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W] gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1] gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201] gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42] gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 231 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227 >gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 230 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 131/235 (55%), Gaps = 14/235 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDI 57 M+I++++D++A+ S + +S +FN Y L +DG+E + E + +ILD+ + + Sbjct: 1 MKIVVVDDEQAVRES---LCRSLSFNGYEVHLAQDGVEALEVIEREQPELVILDVMMPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR + P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R+++R Sbjct: 58 DGLEVCRTLRGSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLR 117 Query: 118 RSRGH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R+ +Q + DL +N D + V G I LT E+ +++LL L++ Sbjct: 118 RAAAESVGSGSQGELSFEDLRLNPDTRDVTRGGRPISLTRTEFALLQLLMANSRRVLSRA 177 Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V+I LR+K + + G I TV G GYVLRE A Sbjct: 178 SILEEVW-GYDFPTSGNALEVYIGYLRRK-TESEGEPRLIHTVRGVGYVLRETAP 230 >gi|302388419|ref|YP_003824241.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302199047|gb|ADL06618.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 236 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 120/231 (51%), Gaps = 8/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+ A+ + I +L S + V G++G+ L + D I+LDLGL DI G E+ Sbjct: 7 VLIIEDEDAICNFISAILSSNGYQVVKAKTGKEGLSLFTSHVPDLILLDLGLPDIDGIEI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR TPV ++S +KV L GADDYI KPF EL+ARIR +R S Sbjct: 67 LKNLRQWS-KTPVIVVSARGYEREKVAALDFGADDYIVKPFGTSELLARIRTAMRHSPQA 125 Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + + G L+++ +TV G +IHLT EY+++ LLS LT + + Sbjct: 126 AGTEVWGEEKVTIGKLAIDYGKRTVYKAGEKIHLTPIEYKLLVLLSKNAGKVLTHDFIIR 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ E E + V + +R+K+ G YI T G GY + E + Sbjct: 186 EIWGVYTE-ESHTLRVNMANIRRKIEANPGAPQYILTEMGVGYRMAEEVTE 235 >gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 226 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++ +A IEL L E + V D G G+E+ + E D IILD+ L +I G Sbjct: 2 IKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGL 61 Query: 61 EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 EVLR R+ K+S P+ +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR +++ Sbjct: 62 EVLR--RIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I G L+++ V I LT +E+ ++++L KN LT+++ + Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +IDV++ LR K+ + K I TV G GYV+++ Sbjct: 180 KVCGYNYVGETNVIDVYVRYLRTKIDDVFKVK-IISTVRGVGYVIKD 225 >gi|167585551|ref|ZP_02377939.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 242 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 1 MRILIAEDDSILADGLTRSLRQSGYAVDHVKNGVEADTALSMQTFDLLILDLGLPKLSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 61 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G L+ + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+V++ +LRKK+ + I TV G GY L Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIATVRGLGYCL 218 >gi|153812004|ref|ZP_01964672.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174] gi|149831903|gb|EDM86989.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174] Length = 229 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++A+A + L+ F V + + G+ G+E ++D IILDL L ++ GF+ Sbjct: 3 KILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALNEDYDLIILDLMLPEVDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K + P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQVRQEK-NIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121 Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S V D+ ++ A+ + V G T KE+ ++ L+ N TK Sbjct: 122 LVGSSAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 RQIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|49187559|ref|YP_030812.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|118479811|ref|YP_896962.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|49181486|gb|AAT56862.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|118419036|gb|ABK87455.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 7 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 67 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 126 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 185 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 229 >gi|30264741|ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47778345|ref|YP_021563.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|167633821|ref|ZP_02392144.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638012|ref|ZP_02396290.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685925|ref|ZP_02877148.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705358|ref|ZP_02895822.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651324|ref|ZP_02934155.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568258|ref|ZP_03021166.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033267|ref|ZP_03100680.1| DNA-binding response regulator [Bacillus cereus W] gi|196040860|ref|ZP_03108158.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196044024|ref|ZP_03111261.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|227817460|ref|YP_002817469.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917319|ref|ZP_04080873.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228948416|ref|ZP_04110699.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093770|ref|ZP_04224869.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42] gi|229124237|ref|ZP_04253429.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201] gi|229186929|ref|ZP_04314084.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1] gi|229603997|ref|YP_002868949.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687479|ref|ZP_05151335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725042|ref|ZP_05186825.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736780|ref|ZP_05194486.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741817|ref|ZP_05199504.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254757417|ref|ZP_05209444.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259416|gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47552050|gb|AAT34038.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|167513829|gb|EDR89197.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530622|gb|EDR93324.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129483|gb|EDS98346.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670389|gb|EDT21129.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083150|gb|EDT68212.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560514|gb|EDV14491.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994696|gb|EDX58651.1| DNA-binding response regulator [Bacillus cereus W] gi|196025360|gb|EDX64030.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028314|gb|EDX66923.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227005140|gb|ACP14883.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228596666|gb|EEK54331.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1] gi|228659539|gb|EEL15187.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201] gi|228689655|gb|EEL43463.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42] gi|228811403|gb|EEM57741.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228842309|gb|EEM87403.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268405|gb|ACQ50042.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 229 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|238789578|ref|ZP_04633362.1| Transcriptional regulator in 2-component system [Yersinia frederiksenii ATCC 33641] gi|238722331|gb|EEQ13987.1| Transcriptional regulator in 2-component system [Yersinia frederiksenii ATCC 33641] Length = 232 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV V GE + L D ++LD+ + G E Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLLD-NSIDLLLLDIMMPRKNGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S D+V GL+ GADDY++KPFN ELVARIRAI+RRS Sbjct: 62 TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q + L +N + +G + LTG E+ ++ LL+ +++E Sbjct: 121 SEQQQNIDQGAPTLEVDCLQLNPGRQEASFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL + G + +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLM 228 >gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 115/218 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EASQAPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum DSM 5476] gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum DSM 5476] Length = 238 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 130/235 (55%), Gaps = 15/235 (6%) Query: 3 ILLIEDDKALAHSIELM---LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 ILL++D+ AH +EL+ +++E F+ + GE ++L DA+ILDL L I G Sbjct: 5 ILLVDDE---AHILELLKYTMENEGFSTLQAETGEQALKLLGRERVDAVILDLMLPGIDG 61 Query: 60 FEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 EVL+ +RV + PV +L+ S D+V GL+ GADDY+ KPF ELVAR++A++R Sbjct: 62 LEVLKNIRVTPGTKNLPVLMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVLR 121 Query: 118 RSRGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R+ + + G + ++ +TV+ +G + LT KE+ ++ L + +T Sbjct: 122 RAEAPGEPGAKKDNRFLKIGPIEIDEIKRTVKRRGELLELTLKEFDLLRLFAQNPGKVIT 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ L ++ E + +DV I +LRKK+ YI TV G GY LRE+A Sbjct: 182 RDEILTKIWGYDYTGETRTVDVHIRQLRKKIEEDDSNPQYILTVRGVGYKLREDA 236 >gi|241662072|ref|YP_002980432.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12D] gi|309779746|ref|ZP_07674503.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|240864099|gb|ACS61760.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|308921485|gb|EFP67125.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 235 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 12/227 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG------IELCKFYEFDAIILDLGL 54 MRIL+ EDD LA + L+ Y D DG + +D +ILD+GL Sbjct: 1 MRILIAEDDATLADGLTRSLRQAG---YAVDQASDGATADAALSAQTAQTYDLLILDVGL 57 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G EVL+ LR PV IL+ S+E++V+GL GADDY++KPF EL AR+RA Sbjct: 58 PRMSGLEVLKRLRSRGAMLPVLILTAADSVEERVKGLDLGADDYMAKPFALSELEARVRA 117 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +VRR G +L+ G L+ + + + + L+ +E ++E+L R ++KE Sbjct: 118 LVRRGTGGGATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGLLEILLARVGRLVSKEQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++HL +E I+V+I +LRKK+ I TV G GY L Sbjct: 178 VDHLCGWGEEVSNNAIEVYIHRLRKKIEVEG---IRIATVRGLGYCL 221 >gi|148543300|ref|YP_001270670.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152710|ref|YP_001841051.1| two-component system response regulator [Lactobacillus reuteri JCM 1112] gi|227364368|ref|ZP_03848461.1| two component response regulator [Lactobacillus reuteri MM2-3] gi|325683567|ref|ZP_08163083.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|148530334|gb|ABQ82333.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224054|dbj|BAG24571.1| two-component system response regulator [Lactobacillus reuteri JCM 1112] gi|227070681|gb|EEI09011.1| two component response regulator [Lactobacillus reuteri MM2-3] gi|324977917|gb|EGC14868.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 221 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 120/201 (59%), Gaps = 1/201 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED++ L+H + + + + V + + G++ +E K +D IILD+ + G Sbjct: 1 MRILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R T + +L+ M +DKV GL +GADDY+SKPF+ +EL+AR+R+ RR Sbjct: 61 EALKEIRATGNRTYIMMLTAMGEEDDKVTGLDAGADDYLSKPFSLKELLARLRSRQRRDD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ GDL++N + +++E + I LT +E ++++ L N L+ +NH++D Sbjct: 121 SYQVDVLEFGDLTLNGNDQSLESH-NSISLTNRENRLLQYFILNANKELSANELINHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKL 201 + + + + + IC LR+KL Sbjct: 180 ENETADQEDLWINICYLRQKL 200 >gi|229014283|ref|ZP_04171402.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228746883|gb|EEL96767.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++ A I L E + + G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSFAKKIVSGLTQEGYFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R +R+ K +TP+ I++ S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKGGKNLTLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKRDR-YIQTIHGRGYSMVE 225 >gi|262043157|ref|ZP_06016295.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039545|gb|EEW40678.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 240 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 18 MRVLVVEDNALLRHHLKVQLQELGHQV---DAAEDAREADYYLGEHLPDIAIVDLGLPDE 74 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S PV +L+ +DKV L +GADDY++KPF+ EE+ AR++A++R Sbjct: 75 DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLR 134 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L + ++K+ + Sbjct: 135 RNSGLASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLMLQ 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A ++ I TV G+GY+ Sbjct: 195 LYPDAELRESHTIDVLMGRLRKKI-QAEYPQDVITTVRGQGYLF 237 >gi|257868543|ref|ZP_05648196.1| response regulator [Enterococcus gallinarum EG2] gi|257802707|gb|EEV31529.1| response regulator [Enterococcus gallinarum EG2] Length = 231 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD +A +E++L+ E +++ V + G + + + FD I+LDLGL DI G E+ Sbjct: 8 VLLIEDDPTIADFMEVVLEKERYHIRVAETGMAALTIFQEQSFDLILLDLGLPDIDGMEL 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R +++ P+ ++S S+ +KV+ L GADDY++KPF EL+ARIR R + Sbjct: 68 LKIIR-KRMAVPLIVISARSNESEKVKALDLGADDYVTKPFGMNELLARIRTAFRHRKQE 126 Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L++ G+L+++ + + + G IHLT EY+++ +L +T + ++ G Sbjct: 127 PMPLVIKNGELTLDTERQLLTKAGTEIHLTKNEYRILTVLFQHLGKVVTYQTLATEVW-G 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ V + +RKK+ Y+ T G GY LR++ Sbjct: 186 PYGTDPQVLRVNMSNIRKKIETNTISPEYLITEIGLGYRLRDH 228 >gi|229164064|ref|ZP_04292001.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619447|gb|EEK76336.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++ A I L E + + G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSFAKKIVSGLTQEGYFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K +TP+ I++ S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDY 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 IQQNEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 225 >gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228] gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis RP62A] gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144] gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228] gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis RP62A] gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis] gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144] gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909] gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU144] gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU028] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|38232907|ref|NP_938674.1| two-component regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38199165|emb|CAE48790.1| two-component regulatory protein [Corynebacterium diphtheriae] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 126/233 (54%), Gaps = 16/233 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ + I L+ E + V + G +L Y D +ILD+ L D G+ Sbjct: 4 LRVLVVDDEPQMVQIISYALELEGWEVLSASSAQRGWQLLNEYRCDLVILDVMLPDASGY 63 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 + +R A TPV +L+ + +++V GL++GADDY++KPF+ +ELV R +A+VRR Sbjct: 64 ALCERIRAAGDVAGTPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVRR 123 Query: 119 SRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S G Q I+ G++SVN V + G R+ T E ++++ L N ++ + L Sbjct: 124 SGGVVQPELREIIVGEVSVNPATHAVVIGGRRVDTTATEGKLLQALVSHPNEVVSVKRLL 183 Query: 176 NHLYD------GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++D GR+ ++ +LRKKL NA + I V G+GYV + Sbjct: 184 NEVWDTTATQGGRN-----MVKSTAYRLRKKLENAGLPADSILAVRGQGYVFQ 231 >gi|225352746|ref|ZP_03743769.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156353|gb|EEG69922.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 243 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+TPV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 69 TRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLR 222 + I++ +I LRKK+ + G K+ IET G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGLTVEDENGEKHKVAPLIETKRGIGYMIR 239 >gi|82699504|ref|YP_414078.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|189023833|ref|YP_001934601.1| transcriptional regulator [Brucella abortus S19] gi|237815071|ref|ZP_04594069.1| Transcriptional activator protein copR [Brucella abortus str. 2308 A] gi|260545665|ref|ZP_05821406.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|82615605|emb|CAJ10592.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|189019405|gb|ACD72127.1| Transcriptional regulatory protein [Brucella abortus S19] gi|237789908|gb|EEP64118.1| Transcriptional activator protein copR [Brucella abortus str. 2308 A] gi|260097072|gb|EEW80947.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] Length = 235 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A +E + + GE G L + +D +++D L G Sbjct: 1 MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR + TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ + RRS Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ GDL ++ A T Q I L +E++++E L +T+ M L +++ Sbjct: 121 PREVDTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ + + TV G GY+L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGF-DEPLLHTVRGAGYMLK 222 >gi|13476389|ref|NP_107959.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14027150|dbj|BAB54104.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 239 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A ++ +V GE G L ++D +++D + G Sbjct: 16 MKILVIEDDREAADYLQKAFTEAGHTAHVAGDGETGFALADAGDYDVMVIDRMMPRRDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 V+ LR +TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ + RR S Sbjct: 76 SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 135 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ + +V I L +E++++E L +T+ M L +++ Sbjct: 136 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV + +LR K+ K + TV G GY+L+ Sbjct: 196 DYHFDPQTNVIDVHVSRLRGKIEKGF-DKPILHTVRGAGYMLK 237 >gi|310817287|ref|YP_003949645.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|309390359|gb|ADO67818.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 224 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD L I L F G + + + IILDL L G + Sbjct: 4 RILLIEDDPQLGAQIADFLGRAGFEPVWWKEGR-ALHPGEAEAYGLIILDLMLPGTYGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR PV +LS + DKVR L+ GADDY++KPF EELV R+RA +RR Sbjct: 63 ILRGLREGS-EVPVLVLSARNDTSDKVRALRLGADDYMTKPFWPEELVERVRARLRRPVM 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q + G L V+L A+ V V G + LT E+ ++ L+ R +T++ ++++ D Sbjct: 122 QRQEQVELGALRVDLQAREVLVHGKPVELTRVEFNLLAALARRPGAAVTRQWLVDNVLDP 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVW 215 E + +DV + +LR+KL G +IETVW Sbjct: 182 EREGTERTLDVHVSRLRRKL----GPGKHIETVW 211 >gi|163842887|ref|YP_001627291.1| transcriptional activator protein copR [Brucella suis ATCC 23445] gi|163673610|gb|ABY37721.1| Transcriptional activator protein copR [Brucella suis ATCC 23445] Length = 235 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A +E + + GE G L + +D +++D L G Sbjct: 1 MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR + TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ + RRS Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ GDL ++ A T Q I L +E++++E L +T+ M L +++ Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ +IDV I +LR K+ + + TV G GY+L+ Sbjct: 181 NYHFDPQTNVIDVHISRLRSKIEKGF-DEPLLHTVRGAGYMLK 222 >gi|53716914|ref|YP_105697.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC 23344] gi|53722061|ref|YP_111046.1| transcriptional activator protein [Burkholderia pseudomallei K96243] gi|76818559|ref|YP_335189.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei 1710b] gi|121596825|ref|YP_989627.1| transcriptional activator IrlR [Burkholderia mallei SAVP1] gi|124381657|ref|YP_001024226.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229] gi|126444012|ref|YP_001062520.1| transcriptional activator protein IrlR [Burkholderia pseudomallei 668] gi|126445741|ref|YP_001078366.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247] gi|126456086|ref|YP_001075473.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a] gi|134283471|ref|ZP_01770171.1| transcriptional activator IrlR [Burkholderia pseudomallei 305] gi|167003030|ref|ZP_02268820.1| transcriptional activator IrlR [Burkholderia mallei PRL-20] gi|167723508|ref|ZP_02406744.1| transcriptional activator IrlR [Burkholderia pseudomallei DM98] gi|167742474|ref|ZP_02415248.1| transcriptional activator IrlR [Burkholderia pseudomallei 14] gi|167819642|ref|ZP_02451322.1| transcriptional activator IrlR [Burkholderia pseudomallei 91] gi|167828025|ref|ZP_02459496.1| transcriptional activator IrlR [Burkholderia pseudomallei 9] gi|167849481|ref|ZP_02474989.1| transcriptional activator IrlR [Burkholderia pseudomallei B7210] gi|167898085|ref|ZP_02485487.1| transcriptional activator IrlR [Burkholderia pseudomallei 7894] gi|167906419|ref|ZP_02493624.1| transcriptional activator IrlR [Burkholderia pseudomallei NCTC 13177] gi|167914754|ref|ZP_02501845.1| transcriptional activator IrlR [Burkholderia pseudomallei 112] gi|167922645|ref|ZP_02509736.1| transcriptional activator IrlR [Burkholderia pseudomallei BCC215] gi|217419095|ref|ZP_03450602.1| transcriptional activator IrlR [Burkholderia pseudomallei 576] gi|226199348|ref|ZP_03794907.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan 9] gi|237509707|ref|ZP_04522422.1| transcriptional activator protein IrlR [Burkholderia pseudomallei MSHR346] gi|238562934|ref|ZP_00439668.2| transcriptional activator protein IrlR [Burkholderia mallei GB8 horse 4] gi|242312627|ref|ZP_04811644.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b] gi|254174272|ref|ZP_04880934.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399] gi|254183534|ref|ZP_04890126.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655] gi|254190152|ref|ZP_04896661.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur 52237] gi|254193175|ref|ZP_04899610.1| transcriptional activator IrlR [Burkholderia pseudomallei S13] gi|254200501|ref|ZP_04906866.1| transcriptional activator IrlR [Burkholderia mallei FMH] gi|254204526|ref|ZP_04910879.1| transcriptional activator IrlR [Burkholderia mallei JHU] gi|254263255|ref|ZP_04954120.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a] gi|254300419|ref|ZP_04967865.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e] gi|254356844|ref|ZP_04973119.1| transcriptional activator IrlR [Burkholderia mallei 2002721280] gi|55977758|sp|O31395|IRLR_BURPS RecName: Full=Transcriptional activator protein irlR gi|52212475|emb|CAH38501.1| transcriptional activator protein [Burkholderia pseudomallei K96243] gi|52422884|gb|AAU46454.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC 23344] gi|76583032|gb|ABA52506.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei 1710b] gi|121224623|gb|ABM48154.1| transcriptional activator IrlR [Burkholderia mallei SAVP1] gi|124289677|gb|ABM98946.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229] gi|126223503|gb|ABN87008.1| transcriptional activator protein IrlR [Burkholderia pseudomallei 668] gi|126229854|gb|ABN93267.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a] gi|126238595|gb|ABO01707.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247] gi|134245220|gb|EBA45314.1| transcriptional activator IrlR [Burkholderia pseudomallei 305] gi|147748113|gb|EDK55188.1| transcriptional activator IrlR [Burkholderia mallei FMH] gi|147754112|gb|EDK61176.1| transcriptional activator IrlR [Burkholderia mallei JHU] gi|148025871|gb|EDK83994.1| transcriptional activator IrlR [Burkholderia mallei 2002721280] gi|157809906|gb|EDO87076.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e] gi|157937829|gb|EDO93499.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur 52237] gi|160695318|gb|EDP85288.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399] gi|169649929|gb|EDS82622.1| transcriptional activator IrlR [Burkholderia pseudomallei S13] gi|184214067|gb|EDU11110.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655] gi|217398399|gb|EEC38414.1| transcriptional activator IrlR [Burkholderia pseudomallei 576] gi|225928563|gb|EEH24591.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan 9] gi|235001912|gb|EEP51336.1| transcriptional activator protein IrlR [Burkholderia pseudomallei MSHR346] gi|238521676|gb|EEP85126.1| transcriptional activator protein IrlR [Burkholderia mallei GB8 horse 4] gi|242135866|gb|EES22269.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b] gi|243061379|gb|EES43565.1| transcriptional activator IrlR [Burkholderia mallei PRL-20] gi|254214257|gb|EET03642.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a] Length = 229 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F + G G+ + E+D IILD+ L G+ Sbjct: 1 MRILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR A STPV L+ + D+V+GL+ GADDY+ KPF+ ELVAR+R+I+RR + Sbjct: 61 TVLERLRRAH-STPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL ++L + QG + LT KE+ ++ LL R+ L + + ++D Sbjct: 120 ARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFNSDTNVVDAAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219 >gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ D IILDL L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + P+ +LS + DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VARTIRKTS-NVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + IV GDL + DA V+ + LT +E++++ L+ +T+E Sbjct: 122 AADPQLENEADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV + +LR+K+ + G YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232 >gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 249 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54 R+L++ED++ + + + L+ E + V G +EL + E FD ++LDL L Sbjct: 19 RVLIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 78 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR S P+ ILS S D+V GL+ GADDY++KPF+ E+VAR RA Sbjct: 79 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 138 Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR R LI T D+S+N V V+G + L+ KE++++EL ++ Sbjct: 139 LLRRQRFSNLPLIPTLKHKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 198 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 199 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGY 246 >gi|157363824|ref|YP_001470591.1| two component transcriptional regulator [Thermotoga lettingae TMO] gi|157314428|gb|ABV33527.1| two component transcriptional regulator, winged helix family [Thermotoga lettingae TMO] Length = 228 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 124/218 (56%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ L +SI+ L E ++V E ++ +D +++D+ L I GFE Sbjct: 7 KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR + I+ P+ IL+ + +I DKVRGL GADDY++KPF+ EL+ARI++++RRS Sbjct: 67 FVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSNI 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I L +N ++ V V+ + ++ +E+ ++EL ++E + +++ Sbjct: 127 TKGEEINFKGLKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVWEN 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +IDV+I LR KL G YI+TV G GY Sbjct: 187 EKIIKSNVIDVYILYLRNKLK-PYGYDRYIQTVPGYGY 223 >gi|119963579|ref|YP_946689.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119950438|gb|ABM09349.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 220 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 122/218 (55%), Gaps = 6/218 (2%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 +ED+++ + + +L E F+V V D G D + D ++LDL L PG EV R Sbjct: 1 MEDEESFSDPLSYLLGKEGFDVEVVDNGSDALVEFDRNGADLVLLDLQLPGTPGTEVCRQ 60 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 LR + S PV +L+ S DKV GL+ GADDY++KP++ ELVAR+RA++RR +G + Sbjct: 61 LR-QRSSVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR-QGEPEE 118 Query: 126 LIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 LI + G + ++++ V V G ++ L KE++++E+L LT+ ++ ++ Sbjct: 119 LITSTVQAGPVRMDIERHVVSVNGVQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRVWGS 178 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + K +DV + +LR K+ Y+ TV G GY Sbjct: 179 DYVGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGY 216 >gi|321271584|gb|ADW79672.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Kentucky] Length = 186 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 109/179 (60%), Gaps = 2/179 (1%) Query: 44 EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103 E+D +ILD+ L D+ G++++R LR A PV +L+ + +IE +V+GL+ GADDY+ KPF Sbjct: 4 EYDLVILDIMLPDVNGWDIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPF 63 Query: 104 NKEELVARIRAIVRRSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162 EL+AR+R ++RR +S DLS++L ++ V G+RI LT KE+ ++E Sbjct: 64 AFAELLARVRTLLRRGNTMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFI 123 Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + L + + + ++D + + IDV + +LR K+ N G K I+TV G GY+L Sbjct: 124 RHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYML 181 >gi|300716267|ref|YP_003741070.1| DNA-binding transcriptional regulator [Erwinia billingiae Eb661] gi|299062103|emb|CAX59219.1| DNA-binding transcriptional regulator [Erwinia billingiae Eb661] Length = 222 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED++ L H + + L+ V D ED E F + D ++DLGL D Sbjct: 1 MRVLVVEDNQLLRHHLAVQLRDMGHQV---DAAEDAKEADYFLNEHTPDITLVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + P+ +L+ + KV L++GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGMALIRRWRSEDVKQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVVARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + +I LT EY +IE L ++K+ + Sbjct: 118 RNSGLASQIISLAPFQVDLSRRELTINDTQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKM-QAEHPLDVITTVRGQGY 218 >gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 231 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGY 227 >gi|238894177|ref|YP_002918911.1| DNA-binding transcriptional regulator PhoP [Klebsiella pneumoniae NTUH-K2044] gi|238546493|dbj|BAH62844.1| response regulator in two-component regulatory system with PhoQ [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 237 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 15 MRVLVVEDNALLRHHLKVQLQELGHQV---DAAEDAREADYYLGEHLPDIAIVDLGLPDE 71 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S PV +L+ +DKV L +GADDY++KPF+ EE+ AR++A++R Sbjct: 72 DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLR 131 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L + ++K+ + Sbjct: 132 RNSGLASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLMLQ 191 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A ++ I TV G+GY+ Sbjct: 192 LYPDAELRESHTIDVLMGRLRKKI-QAEYPQDVITTVRGQGYLF 234 >gi|164685948|ref|ZP_01947601.2| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat Q177'] gi|165924183|ref|ZP_02220015.1| transcriptional regulatory protein [Coxiella burnetii RSA 334] gi|164601469|gb|EAX31777.2| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat Q177'] gi|165916370|gb|EDR34974.1| transcriptional regulatory protein [Coxiella burnetii RSA 334] Length = 223 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-FDAIILDLGLTDIP 58 MR+LL+EDD+ L I LK + +V D L +E FD IILDLGL Sbjct: 1 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +VL+ +R TPV IL+ +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR Sbjct: 61 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ A+ +I GD++++ + V + + ++ +E+ +++ L +++E L Sbjct: 121 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 Y + + ++V I LRK+ G I T+ G GY++ + +K Sbjct: 181 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSK 223 >gi|91775069|ref|YP_544825.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91709056|gb|ABE48984.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 14/230 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILLI+DD L +E L +E+F++ + GE+G L E D ++LD+ + GF Sbjct: 2 LRILLIDDDVELCQMMEEYLGAEDFSLTIAHDGEEGARLALSGEHDLVVLDVMMPRFNGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 + LR +R A PV +L+ D++ GL+ GADDY+SKPFN ELVAR+RAI RR Sbjct: 62 DTLRLIR-ASSQIPVIMLTAKGDEIDRIVGLELGADDYLSKPFNPRELVARLRAIQRRVV 120 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + S+ G +++ + +E +G + +T EY ++E+L+ ++K Sbjct: 121 VRDEALQNHHNKPSITRVGKIAIYPSERIIEWKGEPLDITTSEYALLEVLARHAGHVVSK 180 Query: 172 -EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E+F L GR E + +DV + LR+KL G++ I+TV G GY Sbjct: 181 AELFTQAL--GRAESRYDRSVDVHVSNLRQKLGLLEDGRSPIQTVRGVGY 228 >gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435] gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 129/230 (56%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++VY G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 H-AQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQ + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVSGTTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|300787465|ref|YP_003767756.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796979|gb|ADJ47354.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 231 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +++++D+ A+ S+ L+ E + V V G G+ L + D ++LD+ + + G Sbjct: 1 MHLVIVDDETAVQDSLSRTLRFEGYTVSVAGDGAAGLNLVRAEAPDGVLLDVTMPVLGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + PV +L+ + + D+V GL +GADDY+ KPF +EL+AR+RA++RR+ Sbjct: 61 EVCRVLRAEGNTVPVLMLTARTGVTDRVAGLDAGADDYLVKPFALQELLARVRALLRRTG 120 Query: 121 GHAQSLIVTGDL----SVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174 H V LD T EV +GHR +HLT E+ M+E LT+ + Sbjct: 121 YHTPPAPAAPAALRFADVALDPATREVFRGHRPLHLTRTEFAMLETFLRHPRIVLTRTVM 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ +DV++ LR+KL A G + TV G GYVLRE Sbjct: 181 FENVWGYDFGTASNGLDVYVSYLRRKL-EADGEPRLLHTVRGVGYVLRE 228 >gi|86607308|ref|YP_476071.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86555850|gb|ABD00808.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 230 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ LA +E L + V V G + + D ++LD L I G EV Sbjct: 11 ILVIEDEAKLARFLETELAYRGYRVSVVGDGTVALAAARDQNPDLVLLDWMLPGISGLEV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR+ PV +++ + D+V GL +GADDY+ KPF+ +EL+ARIR ++ +G Sbjct: 71 CRQLRLTGNRVPVVLMTASDEVADRVAGLDAGADDYVVKPFSLQELLARIRIYLQPPKGS 130 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 S +V DL+++ + ++ LT KEY ++ L LT++ L H++ Sbjct: 131 GDSRLVFMDLTLDPVTRQASRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGYD 190 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR K+ G K I+TV G GYVLRE Sbjct: 191 FTGDSNIIEVYIRYLRLKI-EGPGEKRLIQTVRGVGYVLRE 230 >gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912] gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ D IILDL L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDVIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + P+ +LS + DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VARTIRKTS-NVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + IV GDL + DA V+ + LT +E++++ L+ +T+E Sbjct: 122 AADPQLENDADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV + +LR+K+ + G YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232 >gi|295102156|emb|CBK99701.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M +L+IED++AL +I L+ ++V Y D GE + L +D ++LDL L G Sbjct: 1 MHLLVIEDERALCETIVRSLRRLAYSVDYCYD-GEKALALLGVERYDLVLLDLNLPKKDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR LR T V ILS +EDKV+GL +GA+DY++KPF+ EL ARIR++ R Sbjct: 60 MTVLRTLRQTDRETRVLILSARCEVEDKVQGLDAGANDYLAKPFHLAELEARIRSLTLRQ 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L+ G LS + ++T V G + LT KE ++E L + + +++E ++H++ Sbjct: 120 FTQQDVLLSCGGLSFDTRSRTAAVNGQTLTLTRKETGILEYLMVHQGRPVSQEELMDHVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + I V I LRKKL A G + I G GY++ Sbjct: 180 DSSVDSFSNSIRVHISALRKKL-RAVLGYDPIRNRIGEGYLM 220 >gi|260597499|ref|YP_003210070.1| DNA-binding transcriptional regulator PhoP [Cronobacter turicensis z3032] gi|260216676|emb|CBA30024.1| Virulence transcriptional regulatory protein phoP [Cronobacter turicensis z3032] Length = 223 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLSELGHQV---DAAEDAKEADYYLNEHLPDVAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++I+ P+ +L+ +DKV L +GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGLSLIRRWRASEITLPILVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVVARMQALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + V + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVISMPPFVVDLSRREVTIHDNLIRLTAFEYTIMETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ G+ I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQAEYPGEA-ITTVRGQGY 218 >gi|269102741|ref|ZP_06155438.1| hypothetical DNA-binding response regulator [Photobacterium damselae subsp. damselae CIP 102761] gi|268162639|gb|EEZ41135.1| hypothetical DNA-binding response regulator [Photobacterium damselae subsp. damselae CIP 102761] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD + L + V G G+ + E+ IILD L + G Sbjct: 1 MKILVIEDDNTTRDFVVQGLIEHGYVVDEASDGHQGLMMATSCEYSLIILDRMLPMLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL A+R + STPV ILS M S+E++V GL +G+DDY+ KPF EL+AR +++R Sbjct: 61 KVLAAIRATENSTPVMILSAMDSVEERVVGLTAGSDDYLIKPFALAELIARAEILIKRH- 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 HA + + T DL ++L + V I+L KE+ +++ L + +++ Sbjct: 120 -HATTQVATEYVYADLKLDLKSHRVWRGNRVINLQQKEFLLLQYLMGHAESVVSRMSLFE 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ +P+ IIDV I LRKKL +A G + I TV G GYVLR++ Sbjct: 179 SVWNYHFDPKTNIIDVHIANLRKKL-DAEGEVSLIHTVRGAGYVLRQD 225 >gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3] gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3] Length = 237 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ ++L ++ +ILDL + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAVNGEEALQLFNQNNYNLVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++++ L+++L+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNTTAQEKTILAFKGLTIDLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGY 228 >gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum DSM 5476] gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum DSM 5476] Length = 231 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 11/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57 RIL+ ED+ + + + L+ + V GED ++ F E FD +LD+ + I Sbjct: 3 RILVCEDEDVIRDFVVINLERSGYTVVDVSNGEDALK--AFDEAKGDFDIALLDIMMPGI 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEV + LR + + +L+ + DKVRGL GADDY++KPF+ ELVAR+ AI R Sbjct: 61 DGFEVCKRLRERSSTIGIIMLTAKTQEMDKVRGLMLGADDYVAKPFSPSELVARVDAIHR 120 Query: 118 R-----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R ++ IV+G +N ++ + G + LT EYQ++EL +N L + Sbjct: 121 RVNMIANQPQQVKSIVSGPFELNPKSRILTKNGVPVDLTQVEYQIMELFMKNQNVALDRT 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LN ++ +VKI+DV I +LR K+ + YI T+WG GY Sbjct: 181 HILNEIWGDNYYGDVKIVDVNIRRLRMKVEDEPSSPKYILTIWGFGY 227 >gi|167746379|ref|ZP_02418506.1| hypothetical protein ANACAC_01088 [Anaerostipes caccae DSM 14662] gi|317470786|ref|ZP_07930169.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167654372|gb|EDR98501.1| hypothetical protein ANACAC_01088 [Anaerostipes caccae DSM 14662] gi|316901724|gb|EFV23655.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 232 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDKA+ + I L E + + ++ + + D ++LDLGL D+ G E+ Sbjct: 6 ILVVEDDKAVKNLITTTLDIEGYRYHTAGRAQEAMVEAVSQKPDIMLLDLGLPDMDGMEI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ ++S S EDK+ L +GADDY++KPFN EEL+AR+R +RR Sbjct: 66 ISKVR-SWSKMPIIVVSARSDDEDKIEALNAGADDYLTKPFNVEELLARLRVSLRRLHDF 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++ G L ++ + V + G +HLT EY+++ LLS LT LN Sbjct: 125 SDAAQEEAVFTNGGLEIDYSSGCVSLDGKELHLTPIEYKLLCLLSRNVGKVLTHNFILND 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +V + V++ LRKK+ + YI+T G GY Sbjct: 185 VWKSALDSDVTSLRVYMANLRKKIETDSSHPKYIQTHVGIGY 226 >gi|229175788|ref|ZP_04303294.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228607739|gb|EEK65055.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 222 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+++++LA I LK E + G+ + ++D IILD I G E+ Sbjct: 1 MLVIKNERSLAKKIVSGLKQEGHFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPEI 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R+ K +TP+ I++ S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS + Sbjct: 61 CRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDYN 119 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + DL V+ + V+ + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 QQNETNFFQFKDLFVDASSNIVKKGSKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 GYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 222 >gi|218288804|ref|ZP_03493067.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|258512312|ref|YP_003185746.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218241162|gb|EED08338.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|257479038|gb|ACV59357.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 226 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L + + + + V D +E +D I+LD L D G Sbjct: 1 MRLLVVEDEATLRRELVQLFQQRGYTVDAVDTVFAAVEHGMSGAYDCIVLDYMLPDGDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L LR A +TP+ +L+ + +D+V GL GADDY+ KPF+ +EL+AR+ A+VRRS Sbjct: 61 EALTQLREAGCTTPILMLTVKNDPKDRVLGLNKGADDYLGKPFHPDELLARVGALVRRSP 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G ++ ++++E G + LT KE+ ++E L K+ +T++ + ++ Sbjct: 121 ALTDDEVLEHGRAKLHTRSRSLEYDGRTLELTSKEFALMEALFRHKHQVMTRDQLIAKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E +D +I LR+K SN G KN I TV GRGY L+ + Sbjct: 181 GPDAEVADSALDTYIYFLRRKCSN-IGWKNAIVTVRGRGYALQPEGE 226 >gi|332184568|gb|AEE26822.1| response regulator in two-component regulatory system with PhoQ [Francisella cf. novicida 3523] Length = 229 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 132/225 (58%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +DDK +A I+ V G++ + L +D I++D + + G Sbjct: 6 KVLVADDDKEIAQFIKTKFVENGIETTVAYDGKEALFLINTNNYDVIVIDWMMPYLDGIS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L+ LR ++TP+ ILS + S E+K++GL+SG+DDY++KPF+ +EL+ R+ + +R++ Sbjct: 66 LLKILRKQNVNTPIIILSALDSTENKIQGLKSGSDDYLTKPFSIDELMIRVNILYKRTKQ 125 Query: 121 -GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 AQ+ + GD+ ++ A V G I L +EY+++ LL KN ++K M L + Sbjct: 126 ITEAQTHRLSCGDIVLDELAHEVRRNGDLILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D +P+ +++V I +LR KL+ G + I+T+ G GYV++E Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLT-EGGLIDPIKTIRGFGYVIQE 229 >gi|296505136|ref|YP_003666836.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296326188|gb|ADH09116.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 229 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A I R R Sbjct: 63 ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|212218644|ref|YP_002305431.1| transcriptional regulatory protein [Coxiella burnetii CbuK_Q154] gi|212012906|gb|ACJ20286.1| transcriptional regulatory protein [Coxiella burnetii CbuK_Q154] Length = 232 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-FDAIILDLGLTDIP 58 MR+LL+EDD+ L I LK + +V D L +E FD IILDLGL Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +VL+ +R TPV IL+ +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ A+ +I GD++++ + V + + ++ +E+ +++ L +++E L Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 Y + + ++V I LRK+ G I T+ G GY++ + +K Sbjct: 190 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSK 232 >gi|254470513|ref|ZP_05083917.1| two component transcriptional regulator, winged helix family protein [Pseudovibrio sp. JE062] gi|211960824|gb|EEA96020.1| two component transcriptional regulator, winged helix family protein [Pseudovibrio sp. JE062] Length = 227 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 119/220 (54%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD LA ++ L EN G+ G++ ++D I+LDL L + G V Sbjct: 10 VLLIEDDMDLAATVGDYLSFENIECDYAFNGQVGLDSALKNQYDLILLDLTLPKVDGLTV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR ++ P+ +L+ ++ D+V G ++GADDY+ KPF EL RIRA+VRRS+GH Sbjct: 70 CEQLRAQNVTCPILMLTARDAVSDRVAGFEAGADDYLIKPFAFPELAVRIRALVRRSKGH 129 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + S+ + GDL VNL A+ G ++ L+ + ++E L L+K+ ++ G Sbjct: 130 STSVTI-GDLEVNLSARQASRAGRKLKLSPTGWVLLEQLVRSTPNVLSKQELERAVW-GD 187 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P + V + KLR++L + + TV G G+ LR Sbjct: 188 QVPASDSLKVHLYKLRRQLQRPYETQ-LLHTVAGHGFALR 226 >gi|152996350|ref|YP_001341185.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150837274|gb|ABR71250.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 227 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/224 (37%), Positives = 122/224 (54%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 +RIL++EDD +LA + LK E + V DL DGI + FD ++LDLGL + Sbjct: 7 LRILVVEDDLSLADGLVTALKREGYTV---DLLHDGIHALEALANEVFDLVVLDLGLPRL 63 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+ LR + + PV IL+ ++ED+V GL GADDY+ KPF+ EL AR RA++R Sbjct: 64 DGLAVLKQLRANENAVPVLILTARDALEDRVAGLDLGADDYLVKPFDVTELKARARALLR 123 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G A S I L + + V Q ++LT +EY ++ L + T+++ Sbjct: 124 RSYGRAISEIHYKGLVLFPASHKVTYQDKDVNLTRREYSLLHELVSQPGHVFTRDVLQQL 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y D+ E ++V I LRKKL I T+ G GYV+ Sbjct: 184 MYGWGDDVESNALEVHIHHLRKKLF-----PELIRTIRGIGYVV 222 >gi|186471094|ref|YP_001862412.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184197403|gb|ACC75366.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 223 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L I L+ V +V D EL + + A +LDLGL G Sbjct: 1 MRILLVEDDPLLGDGIRAGLRQAGLQVDWVRDGHAAETEL-RTRSYAAAVLDLGLPLKDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL ++R A ++ PV +L+ ++ D+VRGL GADDY+ KP + EL AR+RA+VRR+ Sbjct: 60 IDVLSSVRRAGVTMPVLVLTARDTVPDRVRGLDIGADDYVVKPIDLLELAARLRALVRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q + D+ + A+ V G + ++ +E+ ++ +L L +++E +Y Sbjct: 120 HGQPQEKLEVQDVILEPAARLVYRNGEPVTVSTREFDLLYVLMLNAGRVMSREQLEQAMY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E ++V I +LR KL G + I TV G GYVL Sbjct: 180 GWGREVESNTVEVHIHRLRAKL-----GSDLIRTVRGVGYVL 216 >gi|325478465|gb|EGC81579.1| putative transcriptional activator protein CopR [Anaerococcus prevotii ACS-065-V-Col13] Length = 223 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 130/226 (57%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57 M++L++ED++ L + L+ + + YVTD+ +DG ++L +D IILD+ L Sbjct: 1 MKVLIVEDERKL---LRLLKEGLDLLGYVTDVAKDGEEALDLAYVECYDIIILDINLPKK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEVLR +R + +L+ S I+D+V+GL GA+DY++KPF+ +EL AR+R+++R Sbjct: 58 DGFEVLRDIRQFNKEVNIIMLTARSDIDDRVKGLDCGANDYMTKPFDLKELDARMRSLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ I ++ + + +G + LT KE +IE L L ++ ++ E ++H Sbjct: 118 RKSIQEETEITINGITFDTVKRIATFKGKDLGLTAKETGIIEYLFLNRDRYVSVEELMDH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D + + V + LRKK+ G+NYIE G+GY + E Sbjct: 178 VWDSNADDFSNTVRVHMSSLRKKIKKVT-GENYIENAIGKGYKIYE 222 >gi|251782466|ref|YP_002996768.1| putative response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391095|dbj|BAH81554.1| putative response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 224 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 131/227 (57%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+EDD +L++SI L V D G++G+ + +D I+LDL L + GF Sbjct: 2 IKLLLVEDDLSLSNSIFDFLDDFADVTQVFD-GDEGLYEAESGIYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I PV I++ S++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKELREKDIKIPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G++ V+L K V+V G I L GKE+ ++ L +N L K + L+ Sbjct: 121 KFTDKNLAFGNVVVDLGQKEVQVDGRPIELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYI---ETVWGRGYVLREN 224 + + +++V++ K+RKKL G +++ +T+ GY+L+ + Sbjct: 181 FDSDTTISVVEVYVSKIRKKLK----GTDFVDKLQTLRSVGYILKSH 223 >gi|188579406|ref|YP_001922851.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179342904|gb|ACB78316.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 220 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+ + L V D F A++LDL L D G Sbjct: 1 MRILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALAASGFGAVVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR TPV +L+ ++ D++ GL GADDY+ KPF+ +EL ARIRA+VRR+ Sbjct: 61 DVLRGLRERGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELAARIRAVVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + + ++ V + G + ++ +E+ ++ L R N +K LY Sbjct: 121 GRAAACLEHAGIRLDPAELAVTLHGEPVPVSRREFMVLTALMERPNVLRSKAELEERLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E E ++V + LR K+ GK+ IETV G GY +R A Sbjct: 181 WQEEVESNTVEVHVHNLRAKI-----GKHAIETVRGLGYRMRATA 220 >gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] Length = 255 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ + V+ G + + L + D +ILD+ L D+ GF Sbjct: 25 RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR A I P+ L+ + DKV GLQ+G DDY++KPF EE+VARI AI+RR++ Sbjct: 85 VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKH 144 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q L+ DL ++ + V G I L+ E++++ L + + ++K L+H++ Sbjct: 145 GSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHVW 204 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKN----YIETVWGRGYVLRE 223 + E + I++ +I LR+KL N I+T G GY+LR+ Sbjct: 205 EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLLRD 252 >gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 241 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ G++ EL + I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 65 ASKLREHK-ETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSA 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 NSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + I+TVWG GY A DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEVKASDEPT 240 >gi|239831456|ref|ZP_04679785.1| Transcriptional activator protein copR [Ochrobactrum intermedium LMG 3301] gi|239823723|gb|EEQ95291.1| Transcriptional activator protein copR [Ochrobactrum intermedium LMG 3301] Length = 235 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A +E + + GE G L + +D +++D L G Sbjct: 1 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYALAENGSYDVLVVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR + TPV +LS + ++D+V GL++G DDY++KP+ EL+AR+ + RRS Sbjct: 61 SVVAGLRAKGMETPVLVLSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ GDL ++ A T Q I L +E++++E L +T+ M L +++ Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 D +P+ +IDV I +LR K+ + TV G GY+L+ ++ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGF-DVPLLHTVRGAGYMLKAGKSKQST 230 >gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A I L L E + + GE + ++ + I+LDL L I G++ Sbjct: 6 RILIVDDDENIAELISLYLTKECYETKIVYDGESALSELSVFKPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS DKV GL+ GADDYI KPF +E+VAR++A++RR Sbjct: 66 VCREIRKNN-NVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLRRYH- 123 Query: 122 HAQSLIVTG---------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 QS+ V DLS+NLD +V G + + KE +++ L+ N T+E Sbjct: 124 MPQSIGVDSSNAKCVNYPDLSINLDNYSVNYMGKNVEMPPKELELLYFLASAPNQVFTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L++++ + + +DV I ++R+K+ + IETVWG GY Sbjct: 184 QLLDNIWGYEYIGDTRTVDVHIKRIREKIKDHVHWN--IETVWGIGY 228 >gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 115/218 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241] gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342] gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293] gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI] gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241] gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293] gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342] gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 231 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RR Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ + +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227 >gi|322411860|gb|EFY02768.1| Transcriptional regulatory protein ciaR [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 224 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 129/224 (57%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+EDD +L++SI L V D G++G+ + +D I+LDL L + GF Sbjct: 2 LKLLLVEDDLSLSNSIFDFLDDFADVTQVFD-GDEGLYEAESGIYDLILLDLMLPEKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I PV I++ S++DK G + GADDY++KPF EEL RI+A+++R+ Sbjct: 61 QVLKELREKDIKIPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G++ V+L K V+V G I L GKE+ ++ L +N L K + L+ Sbjct: 121 KFTDKNLAFGNVVVDLGKKEVQVDGQPIELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++V++ K+RKKL + ++T+ GY+L+ + Sbjct: 181 FDSDTTISVVEVYVSKIRKKL-KGTDLVDKLQTLRSVGYILKSH 223 >gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 230 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA + L E + V V GE+ + L D +ILD L + G EV Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYRVAVAGDGEEALTLASERAPDLVILDWMLPKVSGIEV 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + P+ +L+ D++RGL +GADDY+ KPF+ EL AR+RA++RR R Sbjct: 65 CRRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVMRRIR 124 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A I GD+ ++ A V+ G IHL E+++++ L ++E L+ ++ Sbjct: 125 PGLADDRITVGDIVIDRVAHRVKRNGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L+ ++ G + I TV GY L Sbjct: 185 GSDVYVEARTVDVHIGRLRKALNGSSDG-DPIRTVRSAGYSL 225 >gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++D+ + + L+ F V+ G ++L + E D ++LD+ L D+ GF Sbjct: 8 RLVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLVRDLEPDLVVLDVMLPDMDGFT 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R TPV L+ +DKV+GL G DDY++KPF+ EE+VARIRA++RR+ G Sbjct: 68 VTRRMRETGRHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRRTSG 127 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +L+ GDL ++ D+ V G + L+ E++++ L L L+K L+H+ Sbjct: 128 SLPDDDALLRVGDLEMDEDSHEVRRAGIEVDLSPTEFKLLRYLMLNAGRVLSKAQILDHV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSN-AAGGKN-----YIETVWGRGYVLR 222 + + I++ +I LR+K+ N G + I T G GY+LR Sbjct: 188 WQYDWGGDANIVESYISYLRRKIDNVTVPGTDEALPALIHTKRGIGYLLR 237 >gi|72162895|ref|YP_290552.1| response regulator receiver [Thermobifida fusca YX] gi|71916627|gb|AAZ56529.1| response regulator receiver [Thermobifida fusca YX] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 122/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ +E + + D ++LDL L G + Sbjct: 4 RVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLMLPGADGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RR+ Sbjct: 64 VCRQIR-AESGVPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARIRARLRRTEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A ++ GD+++++ +V I+LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEILQIGDITIDVAGHSVRRGDQVINLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGY 220 >gi|329120052|ref|ZP_08248722.1| two component response regulator [Neisseria bacilliformis ATCC BAA-1200] gi|327463583|gb|EGF09901.1| two component response regulator [Neisseria bacilliformis ATCC BAA-1200] Length = 220 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I LK G +G+ +DA +LDLGL +I G Sbjct: 1 MRILLIEDDPHIGDGIAAGLKKLGMAADWFSDGLEGLAAATAAPYDAAVLDLGLPNIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R + ++ PV IL+ ++ D++ GL GADDY+ KPF EEL AR+ +VRR R Sbjct: 61 DILQRWRESGVNLPVLILTARDALPDRLAGLNGGADDYLCKPFALEELAARLNVLVRRHR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G L+++ A+T + G + LT +E++++E+L +++ + LY Sbjct: 121 GRADSGLKFGRLTLDTAAQTASLGGEPLDLTAREWRLLEMLVSNPKHIVSRAQIEDKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ++V I LRKK+ G + I+T G GY L Sbjct: 181 WDQEVDSNAVEVHIHHLRKKI-----GASVIKTKRGLGYQL 216 >gi|298249466|ref|ZP_06973270.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547470|gb|EFH81337.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+K LAH + +L+ E+ V + G G+EL + +DA++LD+ L ++ GF Sbjct: 1 MHILVVEDEKKLAHLLRRVLQEESHTVNLAYDGLSGLELAESGTYDAVVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+ R +R + +PV +L+ S+ED+V GL GADDY+ KPF EEL+AR+ A++RR Sbjct: 61 EICRRMRTDNVMSPVLMLTARGSVEDRVAGLNVGADDYLPKPFAMEELLARVNALLRRRD 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL ++L + +G R I LT KE+ ++E L LT+ + Sbjct: 121 RTFEVATQLRADDLILDL-VRHEARRGERVIELTAKEFALLEYLMRHPGQALTRTQITDA 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E ++D++I LR K+ + + I+TV G GY L Sbjct: 180 VWRYDLEALSNVVDIYIHYLRDKI-DQGFTRPLIKTVRGIGYKL 222 >gi|253689077|ref|YP_003018267.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755655|gb|ACT13731.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD L + + + L+ + +V D + + ++LDLGL D G Sbjct: 1 MNILLIEDDLDLGNGVRIALEDQGLDVIWVRRKVDALHQLDLCVPELVLLDLGLPDGDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +LR PV IL+ +++D++ GL +GADDY+ KPF EL+AR+RA+ RRS Sbjct: 61 SLMASLRQQLKGIPVIILTARGTLQDRLTGLDAGADDYLVKPFVLAELLARVRALARRSY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +I LS+++ + V V + LT EY ++E L LR + LT+ FL Sbjct: 121 GFQDEVIEIRGLSLHVPTRRVAVGTRNVDLTASEYALLETLMLRTDRVLTRR-FLEEKIF 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E +DV + LR+K+ G+ Y+ TV G GYV+ Sbjct: 180 GAKENMSNPLDVHMGNLRRKI-----GEGYVRTVRGVGYVI 215 >gi|240169874|ref|ZP_04748533.1| two component transcriptional regulator TrcR [Mycobacterium kansasii ATCC 12478] Length = 254 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E ++V + G + I + D ++LD+ L D+ G Sbjct: 29 IRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAIAKFERISPDVLVLDIMLPDVDGL 88 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS Sbjct: 89 QILQRVRESDDYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 148 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + GDL ++ ++ V G I L+ E++++ L L++ L+ Sbjct: 149 HLAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 208 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ I+D++I LRKK+ A I TV G GY+LR Sbjct: 209 VWNYDFAGRTSIVDLYISYLRKKID--ADRDPMIHTVRGIGYMLR 251 >gi|26989626|ref|NP_745051.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|148547998|ref|YP_001268100.1| two component transcriptional regulator [Pseudomonas putida F1] gi|24984509|gb|AAN68515.1|AE016483_6 DNA-binding response regulator [Pseudomonas putida KT2440] gi|148512056|gb|ABQ78916.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|313499075|gb|ADR60441.1| Winged helix family two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 226 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L IEDD I L S V D G +G+ +D I LD L ++ G Sbjct: 3 RVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIAGGYDLITLDRMLPEVDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 ++ LR KI+TP+ ++S +S ++++VRGL++G DDY++KPF +E+ AR+ ++RR S Sbjct: 63 IVTTLRNLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSV 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + DL ++L + + ++L EY+++E L +T+ M ++ Sbjct: 123 PTTQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ ++ G I TV G GY + E Sbjct: 183 YHFDPGTNLIDVHIGRLRKKI-DSPGQSPLIRTVRGSGYAIAE 224 >gi|312866663|ref|ZP_07726877.1| nisin biosynthesis regulatory protein NisR [Streptococcus parasanguinis F0405] gi|311097744|gb|EFQ55974.1| nisin biosynthesis regulatory protein NisR [Streptococcus parasanguinis F0405] Length = 223 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 132/225 (58%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL I+DD+ + I LK+ NF+V T + I +C F FD I+LD+ + I G E Sbjct: 4 KILAIDDDEKILRLIANTLKANNFHV-ETRKNIEEINICDFTGFDLILLDV-MMPISGLE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R++R ++I+TP+ L+ ED + G+Q+GADDYI+KPF+ +EL+ARI+ +RR Sbjct: 62 ICRSIR-SQITTPILFLTAKDFEEDLLNGIQAGADDYITKPFSIKELIARIQMHLRREER 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H+ + +++ D++ V Q RI LT +E+ ++ LL+ +N + E N+LY Sbjct: 121 SHHSSKEEMESNITFYRDSQEVYYQSKRISLTKREFDLLYLLAKNENRIFSIEELYNYLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ I +I ++R+K + I+TVWG GY ++N Sbjct: 181 PVDSDAQLRSITEYIYQIRQKFK--IHQIDPIKTVWGGGYKWKKN 223 >gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] Length = 230 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 133/233 (57%), Gaps = 10/233 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+I++++D++A+ S+ L +++ + + GE +++ + + D +ILD+ + + G Sbjct: 1 MKIVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKEQPDLVILDVMMPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R+++RR+ Sbjct: 61 EVCRHLRSHGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120 Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174 A Q+ I DL +N D + V V+G+R I LT E+ +++LL L++ Sbjct: 121 AEASGPSSQAEITFEDLKLNPDTRDV-VRGNRTISLTRTEFALLQLLMTNPRRVLSRSTI 179 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V+I LR+K + G I TV G GYVLR+ A Sbjct: 180 LEEVW-GYDFPTSGNALEVYIGYLRRK-TEQEGEPRLIHTVRGVGYVLRDTAP 230 >gi|160899673|ref|YP_001565255.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160365257|gb|ABX36870.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 220 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+ED+ +A + L+ + F V + FDA +LDLGL D G Sbjct: 1 MHVLLVEDNALVASGVRAGLQLQGFGVDTVASAGQADAAIRSSHFDACVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + PV +L+ ++ ++ GLQ+GADDY+ KPF+ EL AR+ A++RR+ Sbjct: 61 SLLARWRGQGLQVPVLVLTARDAVSQRIEGLQTGADDYLVKPFDLHELAARLHALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G++ +N A ++ QG + L+ +E+ ++ L L+ E + LY Sbjct: 121 GRSVDWIELGEVRINPAAGHIQRQGRTVELSRREWSLLRALLQSPGRILSTEQLRDSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++V + LR+KL G +ETV G GY L Sbjct: 181 YSQDVESNAVNVHVHHLRRKL-----GHELVETVRGEGYRL 216 >gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD L ++ L +E + V GE+ ++ + D ++LDL L + G E Sbjct: 4 RILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARPPDLVVLDLMLPGMDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR + V +L+ SS D+V GL+ GADDY++KPF+ ELVAR+RA +RR Sbjct: 64 VCRRLRARHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGLRRLQL 123 Query: 119 SRGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R A + D L ++ + V G +HLT +E++++ L+ + T+ L Sbjct: 124 DRETADEAPLEFDGLRIDPVRRQVWRDGQPVHLTVREFELLLFLARHPDRPFTRLQLLRE 183 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ G D P + +D I +LR K+ G YI TVWG GY Sbjct: 184 VW-GIDYPGYARTVDSHIQRLRAKIEPTPGAPRYIRTVWGVGY 225 >gi|229112135|ref|ZP_04241678.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15] gi|228671458|gb|EEL26759.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15] Length = 229 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A I R R Sbjct: 63 ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|323485029|ref|ZP_08090382.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum WAL-14163] gi|323693598|ref|ZP_08107799.1| vanr protein [Clostridium symbiosum WAL-14673] gi|323401585|gb|EGA93930.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum WAL-14163] gi|323502335|gb|EGB18196.1| vanr protein [Clostridium symbiosum WAL-14673] Length = 235 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 130/233 (55%), Gaps = 13/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A IE+ L++EN +VY GE+ + +FD ILD+ L DI G Sbjct: 4 KILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDISGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +++R + + PV +L+ DK+ GL GADDYI+KPF ELVAR++A +RR + Sbjct: 64 ICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKK 123 Query: 122 H-AQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + A S + D L++N+ + G + LT E+ ++ +L RK + ++ E Sbjct: 124 YNAGSAVPAADEIFKYAGLTMNIKTYECRLNGETLSLTPTEFSILRILLERKCSVVSAEE 183 Query: 174 FLNHLYDGRDEPEVK---IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ ++E K I V I LR+K+ + YI+TVWG GY + E Sbjct: 184 LFHEVW--QEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKIGE 234 >gi|260598649|ref|YP_003211220.1| transcriptional regulatory protein qseB [Cronobacter turicensis z3032] gi|260217826|emb|CBA32321.1| Transcriptional regulatory protein qseB [Cronobacter turicensis z3032] Length = 245 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIEDD L + + + + F+V ED + + I+LDLGL D G Sbjct: 21 VKILLIEDDLDLGNGVRIAFADQGFDVIWVRRKEDALHQLDVCVPELILLDLGLPDGDGM 80 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R PV IL+ +++D++ GL +GADDY+ KPF EL+AR+RA+ RRS Sbjct: 81 SLMAYVRQRFKGLPVIILTARGTLQDRLSGLDAGADDYLVKPFVLAELLARVRALARRSY 140 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G I LS+++ + V V + LT EY ++E L LR + LT+ L+ Sbjct: 141 GFENEAIEIRGLSLHVPTRRVTVSARHVELTASEYALLETLMLRPDRVLTRGFLEERLF- 199 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E +DV + LR+K+ G Y+ TV G GYV+ Sbjct: 200 GAKENLSNALDVHMGNLRRKI-----GDGYVRTVRGVGYVI 235 >gi|229194199|ref|ZP_04321055.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876] gi|228589290|gb|EEK47253.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876] Length = 229 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ NF V V GE G++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINNFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A I R R Sbjct: 63 ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|255306708|ref|ZP_05350879.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 223 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K L S+ L S++F + GE+ + L +D +ILDL L +I GF Sbjct: 1 MKVLIVEDNKILLESVVEEL-SKHFETEKCEDGEEALYLINQNIYDLVILDLMLPNINGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R+ I TPV IL+ +++DKV GA+DY++KPF EELVAR+ AI+ R+ Sbjct: 60 DILKKMRINNIDTPVLILTAKETLDDKVEAFTIGANDYLTKPFYMEELVARVYAIL-RTN 118 Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + S+ LD K V ++ I L K++ ++E L K + L KE + + Sbjct: 119 GKIKERNGLEFKSLYLDTLEKRVYIEKEEIKLQNKQFNLLEYFVLNKGSILLKEQIYDRI 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++I++V++ LRKKLS G YI+T GY+ Sbjct: 179 WGIDSDATIEIVEVYVSNLRKKLS-KYGYDKYIKTKRKVGYIF 220 >gi|261406956|ref|YP_003243197.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283419|gb|ACX65390.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 235 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 134/229 (58%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ A+ IEL+L+ EN+ V + G+ ++L + D ++LDL L D G++ Sbjct: 3 KILVIDDEVAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + + K + PV +LS + + DKV GL+ GA+DY++KPF+ EL+ARI+ I+RR+ Sbjct: 63 LCKEI-TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +S I+ +L+ +L+++ V G + LT KE++++E L R + T++ Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILESLLKRPDKIFTRD 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + + + +D+ I +LRKKL + A Y+ T++G GY L Sbjct: 182 ELLQIGWGYDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230 >gi|134294163|ref|YP_001117898.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137320|gb|ABO53063.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ LAH I +L+ E+F V GE + K +DA++LD+ L I G Sbjct: 1 MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S++DKV +GADDY+ KPF ELVARIRA++RR Sbjct: 61 EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +V GDL + + L +E+ ++E L L+++ T++K ++ ++ Sbjct: 121 GVGTAQLVCGDLVYAFGTREFRCGDALLALRRREHAILETLMLQQSKTVSKARLMDSVFA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DEP ID++I +LRK L AG I T+ G GY+LR Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AGSTAEIITLRGLGYILR 219 >gi|127514498|ref|YP_001095695.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126639793|gb|ABO25436.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 227 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 129/223 (57%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLI+DD LA + +L+ E FN+ + GE G+ L +FD I+LD+ L + GFE Sbjct: 3 QILLIDDDLGLAELLAQLLELEGFNLTLAHDGEAGLALALEQQFDLILLDVMLPKLNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ALR +K TPV +L+ D+V GL+ GADDY+ KPFN ELVARI+AI+RR+ Sbjct: 63 VLKALR-SKKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIKAIIRRTSH 121 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S++ D+ ++ + V Q + LTG E+ ++ + L+K+ + Sbjct: 122 QMDEQQPSILEFADIKLDPSRQEVLCQDQLLILTGTEFSLLYHMIQHSGEVLSKDNLSEN 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + P + +D+ + LRKKL A G+ ++T+ G+GY+ Sbjct: 182 VLGKKLMPFDRSLDMHLSNLRKKLPERADGRPRVKTLRGKGYI 224 >gi|320106762|ref|YP_004182352.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925283|gb|ADV82358.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 225 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+IEDD +A +E L E V V+ G +G +L +FDA +LD+ L ++ GF Sbjct: 1 MNVLVIEDDFRIASLVERALIEEGHRVVVSGDGREGADLLLTGQFDAALLDIFLPEMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R + TP+ +L+ + ++ VR GADDY+ KPF E L+AR+ AI RR Sbjct: 61 EVLERVRTQQCKTPILVLTAVDAVPKIVRAFDLGADDYLVKPFIVEILLARVGAIARRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H++ TG + ++ + G I LT K++++++ L RK T+E + + Sbjct: 121 NHSEEAPETGSVVLDRGRRLALRHGKEIALTKKQFELLDTLMRRKGLITTREQLIEAGWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221 + + + +DV+I LR KL + + G+ I TV G GY+ Sbjct: 181 IQADVKENTLDVYIHGLRAKLEDQSDKGQPLIRTVHGSGYMF 222 >gi|271500465|ref|YP_003333490.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270344020|gb|ACZ76785.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 222 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ L H + + L V ++ + + D I+DLGL G Sbjct: 1 MRILVIEDNVLLRHHLNVQLNEMGHQVDAAADAKEADYFLQEHAPDIAIVDLGLPIEDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R R ++ P+ +L+ S ++KV L++GADDY++KPF+ EE+VAR++A++RR+ Sbjct: 61 SLIRRWRSHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I V+L + + V G + LT EY ++E L ++KE + LY Sbjct: 121 GLASQIISLPPFEVDLSRRELLVHGEPVKLTAFEYTIVETLIRNNGKVVSKESLMLQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E IDV + +LRKKL +A + I TV G+GY Sbjct: 181 DAELRESHTIDVLMGRLRKKL-QSANSHDVITTVRGQGY 218 >gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 127/229 (55%), Gaps = 6/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+A I +KS + G D + + D ++LD L D+ G + Sbjct: 8 ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRFRPDVVLLDWMLPDLSGLRL 67 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 L +R + + PV +L+ + EDKV GL GADDYI+KPF+ +ELVARI A++RR Sbjct: 68 LTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKV 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+SL+ G ++++ ++ V + G + + E+++++ L + ++ L+ ++ Sbjct: 128 PDRAKSLLRAGSVTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLDKVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + E + +DV + +LRK L G +N + TV G GY+L E K E Sbjct: 188 SNQLDIEERTVDVHVLRLRKALK---GQENLVRTVRGMGYMLSEKDKSE 233 >gi|222528131|ref|YP_002572013.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|312621184|ref|YP_004022797.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|222454978|gb|ACM59240.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] gi|312201651|gb|ADQ44978.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 230 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 126/225 (56%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I+ L+ E + V + GED + K FD ++LD+ L + GF V Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKNENFDMVLLDVMLPKLDGFSV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +++ + DKV GL+ GADDYI+KPF EL+ARIRA +RR+ Sbjct: 66 CKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQS 124 Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ G+L++N + V+ G I LT +EY++++ L +K ++E L ++ Sbjct: 125 AAQDGKVLKAGNLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +V+ +DV + +LR+K+ + N+I T G GY N Sbjct: 185 DYEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229 >gi|171059305|ref|YP_001791654.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170776750|gb|ACB34889.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 239 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 101/185 (54%), Gaps = 5/185 (2%) Query: 45 FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104 + A +LDLGL I G +VL+A+R + TPV +L+ ++ ++ L +GADDY+ KP + Sbjct: 45 YTAAVLDLGLPRIDGLDVLQAVRRRGVKTPVLVLTARDAVPQRIETLDAGADDYVVKPID 104 Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164 EL AR+RA+VRRS G Q LI + ++ A+ V + G I L+ +E+ ++ L LR Sbjct: 105 LHELAARLRALVRRSHGQVQDLISVNGVDLDPGAREVRLDGDPIKLSTREFDLLHALMLR 164 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LT+E NHLY +E ++V + LR+KL N I TV G GY Sbjct: 165 PGRVLTREQLENHLYGWGEEVGSNTVEVHVHHLRRKLGN-----QRIRTVRGVGYAFAPP 219 Query: 225 AKDET 229 E Sbjct: 220 PSSEA 224 >gi|329938522|ref|ZP_08287947.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329302495|gb|EGG46386.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 232 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++DD +A + + + E + GE+ + + D ++LDL L + GF Sbjct: 4 VRLLVVDDDPPIADLVATVARYEGWEAVTAYSGEEALTRAAAFRPDIVVLDLMLPGVDGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL LR A +S PV L+ + D+V GL G DDY+ KPF EEL+AR+R ++RRS Sbjct: 64 GVLDRLRGAGMSVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSL 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +S++ DL+++ D + V + LT EY ++ L + LTK L+ + Sbjct: 124 GPGGPRSVLRVADLTMDEDTREVRRGDRLLALTPTEYDVLRCLLRKSPAVLTKAQILDDV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGYVLRENAK 226 + ++++ + +LR+KL GG I TV G GYV R A+ Sbjct: 184 WQYGFGGRSNVVELVVSRLRRKLEATDGGAVPLIHTVRGVGYVARRAAE 232 >gi|313905958|ref|ZP_07839313.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469218|gb|EFR64565.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 236 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + I L + V G+ I + D I LDLGL D+ G +V Sbjct: 6 ILVVEDDPPVRNLITTTLGMHQYEYLVAGNGQTAIMQAASHNPDVIFLDLGLPDMDGVDV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R +R P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R +RR Sbjct: 66 IRKVRTWT-EIPIIVISARSEEADKIEALDAGADDYLTKPFSVEELLARLRVSLRRMALM 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S H+ + G L+++ A+T + G +HLT EY++++LL+ + LT Sbjct: 125 KSADHSDPVFRNGALTIDYPAETASLGGQELHLTPIEYKLLKLLAKYEGKVLTYAYITKE 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E E+ + VF+ LR+KL +I+T G GY Sbjct: 185 IWGRTTESELASLRVFMATLRRKLEPDRDSSQFIQTHIGIGY 226 >gi|296169906|ref|ZP_06851518.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895462|gb|EFG75164.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 257 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL++D+ AL + +++ L E + V + G + + D ++LD+ L D+ G Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMATFDKVSPDVLVLDIMLPDVDGL 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +L +R + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS Sbjct: 92 RILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSG 151 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + GDL ++ ++ V G I L+ E++++ L L++ L+ Sbjct: 152 QQTPPADETLKVGDLRLDTASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRSEILDR 211 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ I+D++I LRKK+ +G + I TV G GY+LR Sbjct: 212 VWNYDFAGRTSIVDLYISYLRKKID--SGREPMIHTVRGVGYMLRP 255 >gi|226326821|ref|ZP_03802339.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198] gi|225204658|gb|EEG87012.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198] Length = 232 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV + GE ++L D ++LD+ + G E Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVVIASDGEQALKLLD-ASVDLLLLDIMMPRKNGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELR-QNFQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q + L +N + + LTG E+ ++ LL+ +++E Sbjct: 121 SEQKQTDSTTSPTLQVDKLQLNPGRQEASFDNEPLELTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G+ + +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLM 228 >gi|168184842|ref|ZP_02619506.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226947583|ref|YP_002802674.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237793672|ref|YP_002861224.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672112|gb|EDT84073.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841854|gb|ACO84520.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229261533|gb|ACQ52566.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 228 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ LK NF+V + GE+GIE + ++ + ++LD+ L + G E Sbjct: 3 KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + +L+ S DKV GL+ GADDYI KPFN EL RI+AI+RR Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S +I G ++L +K + I +T EY ++++ ++ L+ + Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + KI+DV I +LR K+ +I+TVWG GY Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGY 223 >gi|160878354|ref|YP_001557322.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427020|gb|ABX40583.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 226 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L +I L+ + + V G+ EL +D ++LDL L + G Sbjct: 1 MRILIVEDEIDLCDTIAEGLQIDGYAVDTCYHGDVAYELISTETYDLVVLDLNLPGMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR + ILS SS+ DKV GL GA+DY++KPF EEL ARIR+++RRS Sbjct: 61 DILSDLRKTNKDMKILILSARSSVSDKVLGLDIGANDYLAKPFAFEELEARIRSLLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++V ++S++ +TV V G + +T KE ++E L ++ +++E + H+++ Sbjct: 121 VQENSVLVWNEISLDTVGRTVSVSGIDVTMTKKELALLEYFLLNQSKVISQEELMEHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + V I LRKKL A G + I T G GY L Sbjct: 181 MEADSFSNAVRVHIASLRKKL-KIALGYDPIATKIGEGYFL 220 >gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis] Length = 238 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ LK E + V V GED + L + + +ILD+ + I G Sbjct: 4 IRVLIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R + P+ +L+ DK+ GL GADDYI+KPF+ E++ARI+A++RR Sbjct: 64 EVCRRMR-NHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK-E 172 SR QSLI L+++L TV G I LT KE+++++ + TK + Sbjct: 123 VLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQ 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +F N D E + ++ V I +LRKK+ +I+TVWG GY Sbjct: 183 LFRNAWSDQYIEDDNTVM-VHIRRLRKKIEPDPSDPQFIQTVWGIGY 228 >gi|332707207|ref|ZP_08427260.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L] gi|332353941|gb|EGJ33428.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L] Length = 830 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD ALA ++ +L+ +N+ V + GE+G E + + +D I+L++ L + G Sbjct: 1 MRLLLVEDDNALALTLSKVLREQNYIVNIAGDGEEGCEYAQAFTYDLIVLEVDLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR A + +L ++ ++V+ L + ADDYI KPF + L+ RIR ++R Sbjct: 61 SLCKRLRQASYDRGILLLLSQAATAEQVK-LNAEADDYIVKPFTAKNLLTRIRTLLRHHS 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L+ GD V LD T EV +G +HL+ KEY ++EL ++ L HL Sbjct: 120 VSGLRLLEWGD--VCLDPSTCEVTYKGQLLHLSPKEYGLLELFLSHPRRVFSQSFILGHL 177 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + D P + + + LR+KL + + IETV+G GY L+ Sbjct: 178 WSFEDPPSPETVRAHVKGLRRKLKSVE-ADDMIETVYGMGYRLK 220 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L ++DD + SI L+ + + + E + D +ILDL + G E Sbjct: 536 KVLAVDDDPLVLESIRHFLQPLGVQIITLEEPDQFWEQLEATGPDLLILDLDMPQFNGIE 595 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R +I P+ +L E R Q+GADDYI KP K ELV R+ + R+ Sbjct: 596 LCQVVRNDRIWHGLPILLLCEHLDSETIHRIYQAGADDYIFKPITKSELVTRVFHRLERT 655 Query: 120 R 120 + Sbjct: 656 K 656 >gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271] gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271] Length = 237 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 131/228 (57%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I L++E + + GE +++ + + D +ILDL L + G E Sbjct: 6 KILVVDDEKPISDIISFNLENEGYAIEKAYDGEQALKVFEKSQPDLVILDLMLPKMDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + + PV +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 66 VCREIR-KQSAVPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRNLV 124 Query: 120 -RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + IV GDL ++ DA + G I LT +E++++ L+ +T+E Sbjct: 125 KEPEPQEVNKNEIVVGDLVIHQDAYIISKHGEEIELTHREFELLHYLARHIGQVMTREHL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++D +V+ +DV I +LR+K+ + YI T G GY+L+ Sbjct: 185 LETVWDYDYFGDVRTVDVTIRRLREKIEDIPSHPTYIVTRRGVGYLLK 232 >gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 226 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + ++ + D ++LDL L + G E Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGNEALKEYEKAGADIVLLDLMLPEKSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +++ S DKV GL+ GADDYI+KP++ ELVARIRA++RR+ Sbjct: 63 VCRELRTTS-NVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVLRRNAE 121 Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ +G + +++D V V G I L KE++++E+ LT+ ++ + Sbjct: 122 PTDPMVTVLESGPVRMDVDRHVVSVGGAEIPLPLKEFELLEMFLRNSGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 WGADYVGDTKTLDVHVKRLRSKIETEPGRPRHLVTVRGLGY 222 >gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 241 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ + V+ G + + L + D +ILD+ L D+ GF Sbjct: 11 RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR A I P+ L+ + DKV GLQ+G DDY++KPF EE+VARI AI+RR++ Sbjct: 71 VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKH 130 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q L+ DL ++ + V G I L+ E++++ L + + ++K L+H++ Sbjct: 131 GSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKN----YIETVWGRGYVLRE 223 + E + I++ +I LR+KL N I+T G GY+LR+ Sbjct: 191 EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLLRD 238 >gi|197119976|ref|YP_002140403.1| winged-helix heavy metal transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197089336|gb|ACH40607.1| winged-helix heavy metal transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 224 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 123/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ A+ ++ L F+V + + GEDG+ L + IILD+ L G+ Sbjct: 1 MRILIVEDEQKAANYLKKGLSENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRGGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A PV LS + D+V GL+ GADDY+ KP+ EL+ARIR I+RR Sbjct: 61 SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRYP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L G + LT KE+Q++ L+ R+ L++ ++ Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLHRRGEVLSRTTISEQIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++DV I +LRKK+ + K I+T+ G GYVL E A Sbjct: 181 INFDTDTNVVDVAIRRLRKKVDDPFPVK-LIQTIRGVGYVLDETA 224 >gi|322832102|ref|YP_004212129.1| two component heavy metal response transcriptional regulator, winged helix family [Rahnella sp. Y9602] gi|321167303|gb|ADW73002.1| two component heavy metal response transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 224 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD + ++ L ++V + G DG+ L +DA+ILD+ L + G+ Sbjct: 1 MRILVIEDDVSTGDYLKKGLTEAGYSVDLARNGADGLFLALEEGYDAVILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ LR K PV L+ ++D++ GL+ GADDY+ KPF+ ELV RIR ++RR Sbjct: 61 QVMEVLR-KKSDVPVLFLTARDEVQDRIHGLELGADDYLIKPFSFTELVLRIRTLLRRPA 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL++++ + V Q I LT KE+ +++LL R+ L++ M + ++D Sbjct: 120 AREPDAYSVADLNLDVLRRRVTRQDQTIALTNKEFMLLQLLMRREGEVLSRTMIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++DV I +LR K+ + K I TV G GYV Sbjct: 180 MNFDSDTNVVDVAIKRLRAKVDRSFEVK-LIHTVRGIGYV 218 >gi|319784552|ref|YP_004144028.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170440|gb|ADV13978.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 241 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A ++ +V GE G L ++D +++D + G Sbjct: 18 MKILVIEDDREAADYLQKAFAEAGHTAHVAGDGETGFALADAGDYDVMVIDRMMPRRDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 V+ LR +TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ + RR S Sbjct: 78 SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 137 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ + +V I L +E++++E L +T+ M L +++ Sbjct: 138 AKEAETVYRVGDLELDRLSHSVRRASREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 197 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV + +LR K+ K + TV G GY+L+ Sbjct: 198 DYHFDPQTNVIDVHVSRLRGKIEKGF-DKPILHTVRGAGYMLK 239 >gi|332655191|ref|ZP_08420932.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16] gi|332516051|gb|EGJ45660.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 115/223 (51%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + I LK+ ++ GE + + D I+LDLGL DI G EV Sbjct: 6 ILVVEDDTPVRNLITTTLKAHDYRFLTAANGESAVLEASSHNPDIILLDLGLPDIDGVEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IHRVR-SWSNLPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQRRLAAL 124 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +++ G L V+ A + G +HLT EY+++ LL LT Sbjct: 125 QVGAANTEAVFTNGKLKVDYAAGCAFLDGQELHLTPSEYKLLCLLCKNVGKVLTHTFITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +V + VF+ LRKKL G YI+T G GY Sbjct: 185 QIWGRSWENDVASLRVFMATLRKKLEKEPGSPQYIQTHIGVGY 227 >gi|269139404|ref|YP_003296105.1| two-component transcriptional regulator, winged helix family [Edwardsiella tarda EIB202] gi|267985065|gb|ACY84894.1| two-component transcriptional regulator, winged helix family [Edwardsiella tarda EIB202] gi|304559300|gb|ADM41964.1| Transcriptional regulatory protein PhoP [Edwardsiella tarda FL6-60] Length = 224 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L H + + ++ V + ++ + D I+DLGL G Sbjct: 1 MRILVVEDNNLLRHHLSVQMRELGHQVDAAENAKEADFFVREQSPDIAIVDLGLPGEDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R R +I+ P+ +L+ S ++KV L++GADDY++KPF+ EE++AR++A++RR+ Sbjct: 61 SMIRRWRSEQITLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I +L + + V I LT EY +IE L ++K+ + LY Sbjct: 121 GLASQIISMPPFQADLSRRELRVNETLIKLTAFEYTIIETLIRNSGKVVSKDALMLQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E IDV + +LRKKL N G + I TV G+GY Sbjct: 181 DAELRESHTIDVLMGRLRKKLQNEYPG-DVITTVRGQGY 218 >gi|159900669|ref|YP_001546916.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893708|gb|ABX06788.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 232 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ + + E F V T GED + + +D +ILD+GL I GF Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R PV +L+ + D+V GL+ GADDY+ KPF+ ELVAR+RA++RR+ Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 122 HAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLT--GKEYQMIELLSLRKNTTLTKEMF 174 ++ GD + + LD + LT KE+ ++ L+ T+E+ Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ + + + +DV I +LR KLS N I+T WG GY Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGY 227 >gi|86159336|ref|YP_466121.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775847|gb|ABC82684.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 245 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 6/222 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 LL+EDD LA L+ V +VTD G G++ FD ++LDL L G EV Sbjct: 21 LLVEDDLRLAAFTREYLEGHGVAVVHVTD-GRRGLDEALAGRFDVVLLDLMLPGKDGLEV 79 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR ++ PV +L+ D+V GL+ GADDY++KPF+ EL+ARIRA+VRR+ G Sbjct: 80 CRELR-SRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGR 138 Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + G L V+ A+ V + G + LTG E+ ++ L+ R L +E + Sbjct: 139 AGPPREAVRVGGLVVDPAARRVTLDGREVTLTGYEFALLHALARRAGRVLAREQLIELAG 198 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E + +DV + +LR+KL + I+TV G GY+L Sbjct: 199 GSAEEAFDRSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 240 >gi|17158720|ref|NP_478231.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134669|dbj|BAB77227.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 231 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 122/229 (53%), Gaps = 10/229 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELC--KFYEFDAIILDLGLTDI 57 MR+LL+ED+ L +I+ L + + V +V D G D ++ ++ I D L I Sbjct: 1 MRVLLVEDEPDLGAAIKRTLTQQKYLVDWVLD-GNDAWAYLENQWTQYTLAIFDWMLPGI 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E+ + LR + PV +L+ +EDKV GL +GADDY+ KPF EL+AR+RA+ R Sbjct: 60 SGLELCKRLRYRQSPLPVLMLTAKDRMEDKVTGLDAGADDYLVKPFGMAELLARLRALQR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGH-----RIHLTGKEYQMIELLSLRKNTTLTKE 172 RS + G+L+++ V Q + I LT KE+Q++E N +T E Sbjct: 120 RSPQFQPQELTVGNLTLDYGNNMVVSQNNTGKKQEISLTNKEFQLLEYFMKHPNQIVTTE 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N L++ EP ++ + LR+KL+N+ G N IET+ G GY L Sbjct: 180 QIRNQLWEVSAEPISNVVAAQMRLLRRKLTNSGCG-NMIETLHGTGYRL 227 >gi|300118891|ref|ZP_07056604.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723736|gb|EFI64465.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 229 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLGSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family [Megamonas hypermegale ART12/1] Length = 230 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+++D+K + +E K E + + G++ +++ + D I+LD+ + I GF Sbjct: 1 MKVLIVDDNKQIISILEAYAKKEGYQTVIAVDGQEALDVFQRERPDIILLDVMMPKIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ +++ +K+ GL+ GADDYI KPF+ E++ARI+AI+RR + Sbjct: 61 EVCRVIRKTS-NVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAILRRIQ 119 Query: 121 GHAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++L V +L +NL TV + + LT KE +++ L+ +K+ +++M LN L Sbjct: 120 PKTENLQVFSYDNLQINLVDYTVSINNKVLSLTKKEIEILWTLATKKDRVFSRDMLLNKL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + +D I +LR KL GK I+T+WG GY Sbjct: 180 WGYDYIGDSRTVDSHIKRLRAKLEKYPHGKWEIKTIWGVGY 220 >gi|317132097|ref|YP_004091411.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470076|gb|ADU26680.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 228 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 14/227 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 +IL++EDD+ +A EL N Y D+ DG + C+ + A+I+DL L Sbjct: 3 KILIVEDDENIA---ELERDYLKLNGYRADIEPDGQKACQKALGGGYAALIIDLMLPGKN 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF+++R +R + P+ ++S + DK+RGL GADDY++KPF+ EL+AR+++ +RR Sbjct: 60 GFDIIRDVRSTQ-EVPIIVVSAKAEDIDKIRGLDVGADDYLTKPFSPAELIARVQSHIRR 118 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ + L G L ++ A+ V V G + LT KEY ++ L+ N TKE Sbjct: 119 YERLKGNKTQEEILSFRG-LEIHHAARRVTVSGREVQLTAKEYDLLYFLASNPNIVFTKE 177 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ D ++ + V I ++RKK+ +YIET+WG GY Sbjct: 178 HLFDTIWGVDDYGDLATVPVHIQRIRKKIEKDPSNPDYIETLWGTGY 224 >gi|271502259|ref|YP_003335285.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270345814|gb|ACZ78579.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 222 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD L + +++E + ++ L + ++LDLGL D G Sbjct: 1 MKLLIVEDDTLLQEGLLQAMRNEGYVCDCASTAKEADALINSAHYSLVVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R PV IL+ +++D+V GL GADDY+ KPF E AR+RA++RR + Sbjct: 61 TLLGRWRRNNYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I +++++L+ + V + I LT KE+ ++ L L+ + + +E+ LY Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D+P ++V I LR+K+ GKN I+T+ G GY+L ++ Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI-----GKNRIKTLRGFGYLLTKD 219 >gi|258545772|ref|ZP_05706006.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826] gi|258519017|gb|EEV87876.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826] Length = 219 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 5/219 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD A+A + L E + V D G + + FD I+LD+GL D GFE+ Sbjct: 4 ILLIEDDPAIADPLSYALAREQWQVVWHDTGIAALAALQAQRFDCIVLDVGLPDTDGFEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + +TP+ LS + D++ GL+ GADDY KPF+ EL++RI+A+ RRS Sbjct: 64 CRRIR-QQWTTPLIFLSARNEEIDRIVGLELGADDYCGKPFSNRELISRIKAVCRRSNET 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + N A+T+ G + LT EY+++ L T ++ +N L+D Sbjct: 123 ETASV----WQHNDSAQTISYHGTTLDLTRYEYRLLRHLLAHPGQTFDRDQLVNTLWDHP 178 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +D I LR+KL A + I T G GY L Sbjct: 179 DHIDNRTVDSHIKTLRQKLRAIAPDADPIRTRRGYGYHL 217 >gi|229135927|ref|ZP_04264689.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228647540|gb|EEL03613.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++ A I L E + + G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSFAKKIVSGLTQEGYFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R +R+ K +TP+ I++ S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKGGKNLTLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKRDR-YIQTIHGRGYSMIE 225 >gi|229193368|ref|ZP_04320318.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228590169|gb|EEK48038.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] Length = 220 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +I+++++ A I L E + + +G+ + ++D IILD I G E+ R Sbjct: 1 MIKNERSSAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEICR 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 +R+ K +TP+ I++ S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS + Q Sbjct: 61 QIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCNQQ 119 Query: 125 ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 KEINFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 NVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 220 >gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 240 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 8/237 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++D++ + ++ L E F + G + L + +D I+LD+ L + G E Sbjct: 4 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++AI+RR+ Sbjct: 64 VCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 123 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + L + + V + LT KEY+++ L N TLT+E Sbjct: 124 EISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ E +++DV I KLR+K+ + YI+T+ G GY +E D T Sbjct: 184 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS 240 >gi|89896507|ref|YP_519994.1| hypothetical protein DSY3761 [Desulfitobacterium hafniense Y51] gi|219667638|ref|YP_002458073.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335955|dbj|BAE85550.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537898|gb|ACL19637.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 231 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + +LLIEDD+ +++ + + LK E + V V + ++G+ L D ++LDLGL D G Sbjct: 5 LTVLLIEDDRYISNFVAVSLKKEGYKVTVAESADEGLFLFTSNHPDMVLLDLGLPDKDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R +R TP+ ++S ++K+ L GADDYI+KPF+ EL+ARIRA+ RR + Sbjct: 65 VVIREIR-GFSGTPILVVSAREQEKEKIEALDLGADDYITKPFHMGELLARIRAVKRRLQ 123 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + S+ L+V+ + + V V G+ +HLT EY++++L+ K LT + Sbjct: 124 QQLAPPSLSVFSCDYLTVDYEKRKVLVDGNEVHLTPMEYKLLQLMIANKGKVLTHNYIVK 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + K I VF+ LR+K+ +I T G GY Sbjct: 184 EVWGYSETGDTKTIRVFMANLRRKIEKNIAKPRFILTEIGVGY 226 >gi|240142644|ref|YP_002967157.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] gi|240012591|gb|ACS43816.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] Length = 225 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 1/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLIEDD A A I L V G DG + ++AIILD L + G Sbjct: 3 KLLLIEDDAATAEEILGDLHGRGHEVAWAATGPDGAAAARSGGWNAIILDRMLPGLDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR TP +LS + +++++RGL++G DDY+ KPF EL ARI A++RR Sbjct: 63 LLRDLRGVGDRTPALVLSALGDVDERIRGLRAGGDDYLGKPFVLAELAARIEALLRRPTD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ + G L ++L A T + L +E +++E L R +T+ M +++ Sbjct: 123 ARETFLRVGTLELDLIAGTGRRGRRDLELLPRELKLLEYLMRRPGQVVTRAMMFEEVWNY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R P+ +IDV + +LRKKL A G I V G G+ L Sbjct: 183 RFAPKSNLIDVHVGRLRKKL-EAEGEPMLIHNVRGEGFTL 221 >gi|21223763|ref|NP_629542.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256785143|ref|ZP_05523574.1| two-component system response regulator [Streptomyces lividans TK24] gi|289769037|ref|ZP_06528415.1| two-component system response regulator [Streptomyces lividans TK24] gi|6808396|emb|CAB70633.1| probable two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289699236|gb|EFD66665.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ +D +ILD+ L + G+ Sbjct: 1 MRLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGLEGLHRAGEGVYDLVILDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR++A++RR R Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR-R 119 Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A + V GDL V+ A+ V + LT KE+ ++E L +R ++K L H Sbjct: 120 GQGAGASPVHVHGDLRVDTAARRVFLGEDEATLTAKEFAVLEQLVVRAGQVVSKAEILEH 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + I++V++ LR+KL I TV G GY L Sbjct: 180 VWDFAYDGDPNIVEVYVSALRRKLR-----AGLIRTVRGAGYRL 218 >gi|90423338|ref|YP_531708.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105352|gb|ABD87389.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 229 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL A R + PV IL+ DKV+G +GADDY++KPF+ EE++AR+RA++RRS Sbjct: 61 SVLEAWRRNHRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHAQS + G + ++ V V G+ + +T EY+++ L +++ + HLYD Sbjct: 121 GHAQSELTCGPVVLDTRTGRVSVNGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ ++RKKL + I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLL 216 >gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10] Length = 239 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ + Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A+ + + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPNEFTLLRYFVINAGTVLSKPKILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 237 >gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 227 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 2/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E F V G + + + D ++LD+ L + GF+ Sbjct: 4 RILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQFQEHHPDLVLLDVMLPGMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120 V RA+R P+ +L+ S D V GL++GADDY+ KPF +ELVAR+RA +R R Sbjct: 64 VCRAIRHVS-DVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRDD 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A I DLS+++ V+ GH I LT E+ ++ L+ ++E L ++ Sbjct: 123 NQADEGITLQDLSIDVAGHVVQRDGHVIALTPLEFDLLATLARAPWKVFSREELLEQVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 YRHAADTRLVNVHVQRLRSKIERDPEKPELVVTVRGVGY 221 >gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL N1-067] Length = 236 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 132/236 (55%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G Sbjct: 2 VKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K+ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 62 EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + ++ V + + LT KE++++ L+ + + Sbjct: 122 GKAEVIEENTDEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKM-ENVK 236 >gi|222107038|ref|YP_002547829.1| two component response regulator [Agrobacterium vitis S4] gi|221738217|gb|ACM39113.1| two component response regulator [Agrobacterium vitis S4] Length = 226 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+KALA + +L+ + V G FD +ILDL L ++ G Sbjct: 1 MRILLVEDNKALADGLSAILRGTGYAVDTVSDGASADAAIATENFDLVILDLNLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + IL+ + EDKV+GL GADDY+ KPF+ E AR+R ++RR Sbjct: 61 EVLRCVRARHDKVAILILTARGTPEDKVKGLDLGADDYMIKPFDIGEFEARVRMLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S++ G +S++L++++ G + + +E ++E+L +R + KE + L Sbjct: 121 GLRSSMVSYGAVSLDLNSRSFSAAGVPLDIPARELGLLEVLFMRAGKVVAKEAIIQSLAA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D+ I+ + +LRK+L A + T G GY L + Sbjct: 181 FDDDLSANAIEQYASRLRKRL---APHGLTVRTARGIGYYLEKT 221 >gi|30022740|ref|NP_834371.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229129950|ref|ZP_04258916.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4] gi|29898299|gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228653641|gb|EEL09513.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4] Length = 229 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|260103047|ref|ZP_05753284.1| response regulator [Lactobacillus helveticus DSM 20075] gi|260083137|gb|EEW67257.1| response regulator [Lactobacillus helveticus DSM 20075] gi|328464398|gb|EGF35807.1| two-component response regulator [Lactobacillus helveticus MTCC 5463] Length = 228 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L +N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG++ I+TVWG GY Sbjct: 180 FERVWKQESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGY 224 >gi|260441224|ref|ZP_05795040.1| BasR [Neisseria gonorrhoeae DGI2] gi|291044561|ref|ZP_06570270.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291011455|gb|EFE03451.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 224 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A ++ LK + V G +D ++LDLGL G Sbjct: 1 MRVLLVEDDAMIAEAVSASLKDGGYAVDWVKNGAQVAAAAAAQPYDLMLLDLGLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R A + PV I++ + ++ GL GADDYI KPF+ E AR+RA++RR Sbjct: 61 DVLSEIRAAGCTVPVLIVTARDDLYSRLNGLDGGADDYIVKPFDMAEFKARMRAVLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G AQ+ + G LS+N VE+ +G ++ L+ +E+ +++ L R L++ + + Sbjct: 121 GQAQACLSNGALSLNPATYQVEIIAEGRQVALSNQEFSVLQALLARPGVILSRSDSEDKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225 Y E E +D I L KKL GK I+ V G G+++ R++A Sbjct: 181 YGWGGEVESNAVDFLIHGLCKKL-----GKESIQNVRGVGWLMPRQDA 223 >gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 236 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 126/232 (54%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+KA+ ++ L+ EN+ V G++ +E + FD +ILDL L +PG Sbjct: 7 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA++RR Sbjct: 67 VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHS 125 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 + ++ G+L++++ V V G + LT E++++ LS ++ E Sbjct: 126 DVEPQREVLEFGELTIDVSGHKVLVSGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L + ++G + + ID + LR K+ + ++ TV G GY + K Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKIGDNPRNPTWLHTVHGVGYRFEDPTK 233 >gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 237 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 129/226 (57%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F+V G++ + L ++ D ++LD+ L D+ GF+ Sbjct: 7 RVLVVDDEDNIRALLSATLRLIEFDVRTAASGQEALALAAEFDPDLVVLDVMLPDLDGFQ 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR ++ PV L+ S++ED++ GL +GADDY+SKPF+ EE+V RIRAI+RRS+ Sbjct: 67 VAQRLRDVRVGVPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRRSQV 126 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G ++ DL ++ DA V I L+ E++++ L + ++K L+ Sbjct: 127 EPYPGADSGVLRYADLQLDEDAHEVRRADRVIDLSPTEFKLLRYLMVNAGRVVSKAQILD 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +I++ ++ LRKK+ + A I T+ G GY LR Sbjct: 187 RVWNYDFGGDGRIVESYVYYLRKKVDSRAPA--LIHTIRGVGYTLR 230 >gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 250 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 115/218 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G +E D ++LDLGL + G E Sbjct: 28 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDGLE 87 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 88 VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 147 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 148 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 207 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 208 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 245 >gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704] gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704] Length = 234 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GE + Y I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYHPSLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK + P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIR-AKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124 Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + I D +++NL +V V G + + KE +++ L+ N T+E Sbjct: 125 IPKPEIPGEDKGKCVEYPGITINLTNYSVIVDGETVDMPPKELELLYFLAASPNQVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR+K+ + + + TVWG GY Sbjct: 185 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHSDWS--LSTVWGIGY 229 >gi|295396500|ref|ZP_06806661.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294970692|gb|EFG46606.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 240 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ ++RR R Sbjct: 74 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHTVLRRPRT 132 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 133 STTPAQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235 >gi|284005671|ref|YP_003391491.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] gi|283820855|gb|ADB42692.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 226 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 135/226 (59%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ILLIED+ +L +++ L+ E + V T+L +++ Y++D +++D+ L D G Sbjct: 1 MKILLIEDEPSLLVALQQYLEGEQYQVSTATNLRTASLKVHD-YDYDCVVVDITLPDGNG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ L+ A S + I+S +S++DK+ GL+ GADDY++KPF+ EL ARIR+++RR Sbjct: 60 LAIVNELKEAHSSAGIIIVSAKNSLDDKLSGLELGADDYLTKPFHLPELNARIRSLMRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + G +++ K V V + +TGKEY+++ ++ KN L+K + + H++ Sbjct: 120 QHAGETQLTCGAITIVPHRKQVLVANQPMDVTGKEYELLLFMATNKNRLLSKAIIVEHVW 179 Query: 180 ----DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DG D + + + LR+KL + AG +YI T +G GY+ Sbjct: 180 GDYMDGIDSHD--FLYTHVRNLRRKLLD-AGSPDYITTRYGAGYIF 222 >gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 236 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 126/232 (54%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+KA+ ++ L+ EN+ V G++ +E + FD +ILDL L +PG Sbjct: 7 RILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR RA++RR Sbjct: 67 VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 ++ ++ G+L++++ V V G I LT E++++ LS ++ E Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNGEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L + ++G + + ID + LR K+ + ++ TV G GY + K Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFEDPTK 233 >gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 234 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 5/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + L+ F V GE+ +E F + IILDL L + G E Sbjct: 4 KILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFEQPALIILDLMLPKLDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + LR +I TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR+ Sbjct: 64 VCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTDL 123 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +V GDL + + V + LT KE++++ L+ K LT++ L+ Sbjct: 124 AQPAAEPSERLVIGDLEIFPERYEAAVGDKPLELTPKEFELLLHLARHKGRVLTRDQLLS 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + +I+DV I LR+K+ YI+TV G GY L E + Sbjct: 184 AVWNYDFAGDTRIVDVHISHLREKIEEDTKKPVYIKTVRGLGYKLEEPRR 233 >gi|282895678|ref|ZP_06303803.1| hypothetical protein CRD_00302 [Raphidiopsis brookii D9] gi|281199372|gb|EFA74237.1| hypothetical protein CRD_00302 [Raphidiopsis brookii D9] Length = 237 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDIPG 59 IL++EDD L S+ L E + V GE ++ +D II+D+ L + G Sbjct: 4 ILVVEDDYYLTESLTEALTMERYEVECVKDGEAAWRRLQDLPVVNYDLIIMDITLPKLDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + LR + P+ +L+ +I DK+ GL +GAD Y+ KPFN +EL+A++RA++RR Sbjct: 64 IRLCQKLRDHGCTLPILMLTARDTISDKITGLDAGADSYMVKPFNLQELMAQVRALLRRG 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKEMFLNHL 178 + + + GDLS++ V IHLT KE+ ++E L LR N + T+ ++ + Sbjct: 124 KPVINNTLTWGDLSLDFSKYEVLYGRKPIHLTPKEFALMEAL-LRCNGRISTRSSLIDQI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + PE + I +I LR KL N K+ IET+ G GY L+ Sbjct: 183 WASESPPEEETIKTYIRNLRAKLINVGAPKDLIETIHGVGYRLK 226 >gi|210621111|ref|ZP_03292474.1| hypothetical protein CLOHIR_00417 [Clostridium hiranonis DSM 13275] gi|210154932|gb|EEA85938.1| hypothetical protein CLOHIR_00417 [Clostridium hiranonis DSM 13275] Length = 224 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 131/225 (58%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL +ED+K L SI L S++F+V + GE+ + + + +D ++LDL L + G Sbjct: 1 MKILAVEDNKTLLDSIIEEL-SKHFDVEGCEDGEEALYMIEQDIYDLVVLDLMLPGMNGM 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E+L+ R I TPV IL+ +++DKV Q+GA+DY++KPF EELVAR+ AI+R + Sbjct: 60 EILKNARNKGIDTPVLILTAKEALDDKVEAFQTGANDYLTKPFYMEELVARVYAILRTNG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + D+ ++ K V + I L K+Y ++E + + L KE + ++ Sbjct: 120 KLTEKTGLQFKDMYIDTSEKRVFIGDEEITLQNKQYNLLEYFVMNRGAILLKEQIYDRIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++I++V++ LRKKLS G YI+T GY+L E+ Sbjct: 180 GIDSDATIEIVEVYVSNLRKKLSK-FGYDKYIKTKRKVGYILDED 223 >gi|187933155|ref|YP_001884657.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187721308|gb|ACD22529.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 229 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED++++ I++ LK +F V + GEDG++ + + D +LD+ L I GF+ Sbjct: 3 RILLVEDEESIRGFIKINLKRNDFEVIEAETGEDGLKAAEKFSIDLAVLDVMLPGIDGFK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ + DK+ GL+ GADDYI KPFN EL+ RI+AI+RR Sbjct: 63 VCDELRKRYPKIGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRIGD 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + ++ ++L ++ + I +T KEY +++L N +++ LN Sbjct: 123 EKQVKEDINKLIREPFIIDLYSQKLFKNSIEIDVTPKEYLLMKLFLKNPNKAFSRDELLN 182 Query: 177 HL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + YD +P K+IDV I +LR K+ + +IET+WG+GY Sbjct: 183 LIWGYDYFGDP--KLIDVNIRRLRAKIEDNPSEPEFIETIWGKGY 225 >gi|300905846|ref|ZP_07123579.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|301301944|ref|ZP_07208078.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|300402315|gb|EFJ85853.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300842925|gb|EFK70685.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|315256926|gb|EFU36894.1| response regulator receiver domain protein [Escherichia coli MS 85-1] Length = 219 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ D + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPDKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|260774096|ref|ZP_05883011.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] gi|260611057|gb|EEX36261.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] Length = 225 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD +A IE LK+E + + G+ +E YE D +ILD L G Sbjct: 1 MRILLIEDDPRIASFIERGLKAEGHQIQHLNDGQYAVETVISYEPDLLILDRMLPHCDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 + + +R A I + +LS + ++++V+GL++GADDY++KPF+ EEL+AR+ A+ RR S Sbjct: 61 TICQQIRSAGIDVRILMLSALGDVDERVKGLRTGADDYLAKPFHFEELLARLDALQRRHS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + DL + L V I LT KE ++ELL + ++E L +++ Sbjct: 121 ESSPLPTLQVADLVLCLPTMQVTRDNQLIELTAKELSILELLMNKPGHIFSRERILANVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P ++DV++ +LRKK+ + ++T G GY L+ + Sbjct: 181 GMHQDPLTNVVDVYMRRLRKKIDDPFTAP-LLKTKRGMGYYLQAD 224 >gi|169837195|ref|ZP_02870383.1| two-component response regulator [candidate division TM7 single-cell isolate TM7a] Length = 205 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 117/204 (57%), Gaps = 4/204 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ L I L E + V G D +E E+D I+ D+ L I GF Sbjct: 1 MRILVVEDEQNLNDIIVKRLILEKYGVDTCFNGNDALEYIFSTEYDVIVSDIMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E+L+ +R I TPV +L+ + IED+V+GL GADDY+ KPF +EL+ARIR ++RR+ Sbjct: 61 EILKRIREKGIKTPVLLLTALDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRRNS 120 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +A ++ +L+VN ++ V I L+ +E+ ++E + K L++E Sbjct: 121 TNGNSNASNIFSIANLTVNCNSHDVFRDDVPIKLSTREFTILEYMIRNKERVLSREQIEQ 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKK 200 H+++ E +IDV+I LRKK Sbjct: 181 HIWNYDYEGGTNVIDVYIRYLRKK 204 >gi|319795275|ref|YP_004156915.1| two component heavy metal response transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315597738|gb|ADU38804.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 235 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ A + L + V G DG L +++D I+LD+ L GF Sbjct: 1 MKILIVEDELRTADYLSKGLTEQGCTVDAAHNGIDGQHLALTHDYDVIVLDVMLPGQDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ +ED+++GL GADDY+ KPF+ EL+AR++A+ RR R Sbjct: 61 AVLRALRAVK-QTPVIMLTARDRVEDRIKGLHEGADDYLVKPFSFLELLARLQALNRRGR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +L ++L A+ RI LT KE+ ++ +L+ R+ L+K ++D Sbjct: 120 KQEPVQLRIANLQIDLLARKAFRGATRIDLTAKEFALLAVLARRQGEILSKTAIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++V I +LR K+ +A + T+ G GYV+ Sbjct: 180 MNFDSNTNVVEVAIKRLRDKI-DAPFSPKLLHTIRGMGYVM 219 >gi|159037095|ref|YP_001536348.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157915930|gb|ABV97357.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 222 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I L+ V V G+ G E+ +D ++LD L +PG Sbjct: 1 MRVLVVEDERNLADAITRGLRKRGMAVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGMPGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ L + T V +L+ ++ D+V GLQ GADDY+ KPF +ELVAR++A+ RR+ Sbjct: 61 QICAELAASGALTRVLMLTASGTVADRVEGLQLGADDYLPKPFAFDELVARVQALGRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ DL ++ +T + LT KE+ ++ L ++ E L ++D Sbjct: 121 PAAPPVLAVADLVLDPARRTATRADVPVDLTNKEFGVLHELVKAGGAVVSSEELLERVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +P I+ V + LR+KL G IETV G GY + E A Sbjct: 181 ANTDPFTTIVRVTVMTLRRKL----GDPPLIETVVGAGYRVAEAA 221 >gi|251789546|ref|YP_003004267.1| DNA-binding transcriptional regulator PhoP [Dickeya zeae Ech1591] gi|27526279|emb|CAD33237.1| PhoP protein [Erwinia chrysanthemi] gi|247538167|gb|ACT06788.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 222 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L H + + L V ++ + + D I+DLGL G Sbjct: 1 MRILVVEDNVLLRHHLNVQLNEMGHQVDAAADAKEADYFLQEHAPDIAIVDLGLPIEDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R R ++ P+ +L+ S ++KV L++GADDY++KPF+ EE+VAR++A++RR+ Sbjct: 61 SLIRRWRSHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I V+L + + V G + LT EY +IE L ++KE + LY Sbjct: 121 GLASQIISLPPFEVDLSRRELLVHGEAVKLTAFEYTIIETLIRNNGKVVSKESLMLQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E IDV + +LRKKL +A + I TV G+GY Sbjct: 181 DAELRESHTIDVLMGRLRKKL-QSANSHDVITTVRGQGY 218 >gi|49478722|ref|YP_038715.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140835|ref|YP_085995.1| DNA-binding response regulator [Bacillus cereus E33L] gi|49330278|gb|AAT60924.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974304|gb|AAU15854.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 233 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 7 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 67 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + + T KE+ ++ N L KE Sbjct: 126 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 185 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 229 >gi|15608167|ref|NP_215543.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis H37Rv] gi|15840457|ref|NP_335494.1| DNA-binding response regulator KdpE [Mycobacterium tuberculosis CDC1551] gi|31792218|ref|NP_854711.1| transcriptional regulatory protein KdpE [Mycobacterium bovis AF2122/97] gi|121636956|ref|YP_977179.1| putative transcriptional regulatory protein kdpE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660809|ref|YP_001282332.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis H37Ra] gi|148822236|ref|YP_001286990.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis F11] gi|215402842|ref|ZP_03415023.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis 02_1987] gi|215410630|ref|ZP_03419438.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis 94_M4241A] gi|215426309|ref|ZP_03424228.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis T92] gi|215429888|ref|ZP_03427807.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis EAS054] gi|218752699|ref|ZP_03531495.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis GM 1503] gi|219556895|ref|ZP_03535971.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis T17] gi|224989428|ref|YP_002644115.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253799943|ref|YP_003032944.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 1435] gi|254231318|ref|ZP_04924645.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis C] gi|254550012|ref|ZP_05140459.1| transcriptional regulator kdpE [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185938|ref|ZP_05763412.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A] gi|260204245|ref|ZP_05771736.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85] gi|289446608|ref|ZP_06436352.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A] gi|289555191|ref|ZP_06444401.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 605] gi|289569007|ref|ZP_06449234.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T17] gi|289573667|ref|ZP_06453894.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85] gi|289744763|ref|ZP_06504141.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis 02_1987] gi|289749559|ref|ZP_06508937.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T92] gi|289753088|ref|ZP_06512466.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis EAS054] gi|289761163|ref|ZP_06520541.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis GM 1503] gi|297633554|ref|ZP_06951334.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 4207] gi|297730539|ref|ZP_06959657.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN R506] gi|298524524|ref|ZP_07011933.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis 94_M4241A] gi|306775163|ref|ZP_07413500.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu001] gi|306781922|ref|ZP_07420259.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu002] gi|306783723|ref|ZP_07422045.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu003] gi|306788078|ref|ZP_07426400.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu004] gi|306792411|ref|ZP_07430713.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu005] gi|306796814|ref|ZP_07435116.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu006] gi|306802700|ref|ZP_07439368.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu008] gi|306806879|ref|ZP_07443547.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu007] gi|306967079|ref|ZP_07479740.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu009] gi|306971270|ref|ZP_07483931.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu010] gi|307078999|ref|ZP_07488169.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu011] gi|307083559|ref|ZP_07492672.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu012] gi|313657868|ref|ZP_07814748.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN V2475] gi|1870001|emb|CAB06852.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN KDPE [Mycobacterium tuberculosis H37Rv] gi|13880629|gb|AAK45308.1| DNA-binding response regulator KdpE [Mycobacterium tuberculosis CDC1551] gi|31617806|emb|CAD93915.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN KDPE [Mycobacterium bovis AF2122/97] gi|121492603|emb|CAL71071.1| Probable transcriptional regulatory protein kdpE [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600377|gb|EAY59387.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis C] gi|148504961|gb|ABQ72770.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis H37Ra] gi|148720763|gb|ABR05388.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis F11] gi|224772541|dbj|BAH25347.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321446|gb|ACT26049.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 1435] gi|289419566|gb|EFD16767.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A] gi|289439823|gb|EFD22316.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 605] gi|289538098|gb|EFD42676.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85] gi|289542761|gb|EFD46409.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T17] gi|289685291|gb|EFD52779.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis 02_1987] gi|289690146|gb|EFD57575.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T92] gi|289693675|gb|EFD61104.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis EAS054] gi|289708669|gb|EFD72685.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis GM 1503] gi|298494318|gb|EFI29612.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis 94_M4241A] gi|308216312|gb|EFO75711.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu001] gi|308325376|gb|EFP14227.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu002] gi|308331505|gb|EFP20356.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu003] gi|308335311|gb|EFP24162.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu004] gi|308339119|gb|EFP27970.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu005] gi|308342791|gb|EFP31642.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu006] gi|308346700|gb|EFP35551.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu007] gi|308350615|gb|EFP39466.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu008] gi|308355248|gb|EFP44099.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu009] gi|308359203|gb|EFP48054.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu010] gi|308363105|gb|EFP51956.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu011] gi|308366769|gb|EFP55620.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu012] gi|323720527|gb|EGB29609.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CDC1551A] gi|328459686|gb|AEB05109.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 4207] Length = 226 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ + ++ + L + V G + + D +ILDLGL D+ G +V Sbjct: 4 VLVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPPDVVILDLGLPDMSGIDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR ++ PV +LS + DKV+ L +GADDY++KPF +E +AR+RA VRR+ Sbjct: 64 LGGLR-GWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122 Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A Q +I T +V+L K V G +HLT E+ M+E+L+ + + + L ++ Sbjct: 123 AELEQPVIETDSFTVDLAGKKVIKDGAEVHLTPTEWGMLEMLARNRGKLVGRGELLKEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + V++ +LR+KL + ++ T G GY Sbjct: 183 GPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGY 222 >gi|237786491|ref|YP_002907196.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759403|gb|ACR18653.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 268 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 102 VCRRIRTFSDCY-ILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263 >gi|206577736|ref|YP_002236556.1| transcriptional regulatory protein QseB [Klebsiella pneumoniae 342] gi|288933539|ref|YP_003437598.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290511402|ref|ZP_06550771.1| DNA-binding transcriptional regulator QseB [Klebsiella sp. 1_1_55] gi|206566794|gb|ACI08570.1| transcriptional regulatory protein QseB [Klebsiella pneumoniae 342] gi|288888268|gb|ADC56586.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289776395|gb|EFD84394.1| DNA-binding transcriptional regulator QseB [Klebsiella sp. 1_1_55] Length = 219 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK + I+ L F++ G +G +DA ILDL L I G Sbjct: 1 MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S + G +S++ + T + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQSSSELRHGKVSLDPNRLTASLDGESLVLKPKEFALLELLLRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE ++V + LR+KL G +I TV G GY L Sbjct: 181 WDDEVSSNAVEVHVHHLRRKL-----GSGFIRTVHGIGYTL 216 >gi|114797709|ref|YP_760024.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114737883|gb|ABI76008.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 227 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L + +L + V + GEDG L + +DA++LDLGL I G Sbjct: 1 MRILVVEDDADLRRQLADVLSQSGYAVDLAADGEDGQFLGETEPYDAVVLDLGLPKIDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL++ R + PV IL+ +KV G +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 SVLKSWRKEGKTFPVLILTARDQWSEKVSGFDAGADDYLTKPFITEELLARLRALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH+ + I G L V+ A V G I LT EY+++ L + + + + H+YD Sbjct: 121 GHSAATIECGKLMVDTRAARATVNGEPIKLTAHEYRVLSYLMHHQGRVVPRTELVEHIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VFI +LR+K+ G++ I+T G GY L Sbjct: 181 QDFDRDSNTIEVFIGRLRRKI-----GQDRIQTERGLGYRL 216 >gi|104781224|ref|YP_607722.1| DNA-binding response regulator [Pseudomonas entomophila L48] gi|95110211|emb|CAK14918.1| putative DNA-binding response regulator [Pseudomonas entomophila L48] Length = 226 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L IEDD I L S V D G +G+ +D I +D L ++ G Sbjct: 3 RVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLSKAIAGGYDLITVDRMLPEVDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 ++ LR KI+TP+ ++S +S ++++VRGL++G DDY++KPF +E+ AR+ ++RR S Sbjct: 63 IVTTLRSLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNST 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + DL ++L + ++L EY+++E L +T+ M ++ Sbjct: 123 PMTQTRLQVADLELDLISHEARRGEQSLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ ++ G I TV G GY + E Sbjct: 183 YHFDPGTNLIDVHIGRLRKKI-DSPGQTPLIRTVRGSGYAIAE 224 >gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 227 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D++ + ++L L+ E F V G+ +++ E++ IILDL L I G+ Sbjct: 4 IRILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEYNLIILDLMLPVIDGW 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 V + +R K P+ +L+ DKV G + GADDY+ KPF+ ELVAR++A++RR Sbjct: 64 TVCKEVR-KKSDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRRLG 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +G Q+L G L + +++TV G + LT KE+ ++ L+ K T+E L + Sbjct: 123 PKGPEQTLEFPG-LVIEPESRTVRADGKEVALTPKEFDLLYFLAKNKEKVFTREKLLEEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ +D I +LR+KL + +YI TVWG GY Sbjct: 182 WGYDFFGSLRTVDTHIKQLREKLGRSKAA-SYITTVWGVGY 221 >gi|219854708|ref|YP_002471830.1| hypothetical protein CKR_1365 [Clostridium kluyveri NBRC 12016] gi|219568432|dbj|BAH06416.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 234 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 8/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDKA+ I L+++ + + + G I + D IILDLGL D+ G E+ Sbjct: 2 ILVVEDDKAIRKLITTTLETQGYRYHTAETGGASILEAVSRQPDIIILDLGLPDMDGVEI 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ +R + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R +RR R Sbjct: 62 IKKVRTWS-NVPIIVVSARSEDRDKIDSLDAGADDYLTKPFSVEELLARLRVSLRRIRYD 120 Query: 123 AQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ L+ + L ++ +A V + G +HLT EY++I LL+ LT L+ Sbjct: 121 SKKLLKDAAIFINSGLKIDYEAGCVWLDGDEVHLTPIEYKLICLLAKNVGKVLTHNFILH 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ G ++ + VF+ LRKK+ YI+T G GY Sbjct: 181 EIW-GNYSNDISALRVFMATLRKKIEKEPSKPKYIQTHIGIGY 222 >gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104] gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp. avium ATCC 25291] gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104] Length = 239 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ + Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A+ + + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 237 >gi|238789085|ref|ZP_04632874.1| Two-component response regulator of virulence determinant [Yersinia frederiksenii ATCC 33641] gi|238722849|gb|EEQ14500.1| Two-component response regulator of virulence determinant [Yersinia frederiksenii ATCC 33641] Length = 223 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + ++ V D ED E F + D I+DLGL Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + + P+ +L+ S +DKV L++GADDY++KPF+ EE++ARI+A++R Sbjct: 58 DGLSLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + V +I LT EY +IE L ++K+ + Sbjct: 118 RNIGLASQVIDFPPFQIDLSRRELSVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LY + E IDV + +LRKKL G+ I T+ G+GY N Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLQAEHEGE-VITTIRGQGYRFDAN 223 >gi|325110443|ref|YP_004271511.1| transcriptional regulator [Planctomyces brasiliensis DSM 5305] gi|324970711|gb|ADY61489.1| two component transcriptional regulator, winged helix family [Planctomyces brasiliensis DSM 5305] Length = 225 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED L +++L+L++E V D GE G E FDAI+LDL L G + Sbjct: 3 RILIIEDQLKLQRNLQLLLETEGHEVVAVDSGETGYETAVAETFDAILLDLNLPGRDGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL ALR I TP+ I++ SIE++V GL GADDY+ KPF EL+AR+RA++RR Sbjct: 63 VLAALRSQGICTPLLIITARDSIEERVAGLDRGADDYLIKPFAHAELLARLRALLRRGAS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ D+ VN+ +TV G + L+ +E++++E L KNT +T+EM ++ Sbjct: 123 TTNRLLHCRDVEVNVLLRTVTRGGVELDLSQREFELLEFLVRHKNTDVTREMLAREVWKE 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 IDV I LR+K+ +I T+ G GY +R+ Sbjct: 183 PGGMLTNAIDVCINGLRRKVER-ENTPQFIVTLRGVGYTVRD 223 >gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] Length = 234 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ ++ L E ++VY GE+ +E E D I+LDL L + G E Sbjct: 3 KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVR-KTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + + GDL+++ +A V +G I LT +E++++ L+ +T+E Sbjct: 122 ATREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + NY+ T G GY LR Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLR 229 >gi|228935978|ref|ZP_04098788.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823746|gb|EEM69568.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 229 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F + V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQIDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|153954095|ref|YP_001394860.1| KdpE [Clostridium kluyveri DSM 555] gi|146346976|gb|EDK33512.1| KdpE [Clostridium kluyveri DSM 555] Length = 238 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 8/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDKA+ I L+++ + + + G I + D IILDLGL D+ G E+ Sbjct: 6 ILVVEDDKAIRKLITTTLETQGYRYHTAETGGASILEAVSRQPDIIILDLGLPDMDGVEI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ +R + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R +RR R Sbjct: 66 IKKVRTWS-NVPIIVVSARSEDRDKIDSLDAGADDYLTKPFSVEELLARLRVSLRRIRYD 124 Query: 123 AQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ L+ + L ++ +A V + G +HLT EY++I LL+ LT L+ Sbjct: 125 SKKLLKDAAIFINSGLKIDYEAGCVWLDGDEVHLTPIEYKLICLLAKNVGKVLTHNFILH 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ G ++ + VF+ LRKK+ YI+T G GY Sbjct: 185 EIW-GNYSNDISALRVFMATLRKKIEKEPSKPKYIQTHIGIGY 226 >gi|146300485|ref|YP_001195076.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154903|gb|ABQ05757.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 226 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 121/225 (53%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58 M+ILL+EDD L+ I ++ F T + + L K+ YE+D IILD+ + I Sbjct: 1 MKILLLEDDFTLSKEISAFFTTKQFEC--TPYYDGSLLLKKYFPYEYDLIILDINVPGIN 58 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV + +R TP+ +L+ S IEDK+ SGADDY+ KPF+ EEL ARI +++RR Sbjct: 59 GIEVCKGIREIDKKTPIIMLTAFSEIEDKLASFDSGADDYLVKPFHFEELYARISSLLRR 118 Query: 119 SRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+ I+ DL + D V G I LT KE+++I +L+ K L+K+ Sbjct: 119 KEIPQQTEKKIIIEDLEILEDEMKVLRSGEEIKLTPKEFKLILILAHAKGKVLSKQFIAE 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+D E I+V+I LRKK+ K I+T G GY L Sbjct: 179 KLWDYHIETNQNTIEVYINFLRKKIDKDHETK-LIKTKIGYGYYL 222 >gi|238794386|ref|ZP_04637997.1| Transcriptional regulator in 2-component system [Yersinia intermedia ATCC 29909] gi|238726287|gb|EEQ17830.1| Transcriptional regulator in 2-component system [Yersinia intermedia ATCC 29909] Length = 232 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 124/228 (54%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV V GE + L D ++LD+ + G E Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLLD-NSIDLLLLDIMMPRKNGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S D+V GL+ GADDY++KPFN ELVARIRAI+RRS Sbjct: 62 TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQSLIV-----TGD---LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q V T D L +N + +G + LTG E+ ++ LL+ +++E Sbjct: 121 SEQQQNVDQGAPTLDVDCLQLNPGRQEATFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL + G + +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLM 228 >gi|254559323|ref|YP_003066418.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens DM4] gi|254266601|emb|CAX22371.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens DM4] Length = 220 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+ + L V D F A++LDL L D G Sbjct: 1 MRILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALATSGFAAVVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR TPV +L+ ++ D++ GL GADDY+ KPF+ +EL ARIRA+VRR+ Sbjct: 61 DVLRGLRGRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + + ++ V + G I ++ +E+ ++ L R + +K LY Sbjct: 121 GRAAACLEHAGIRLDPAELAVTLHGRPIPVSRREFMVLAALMERPSVLRSKGELEERLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E E ++V + LR K+ GK+ IETV G GY +R A Sbjct: 181 WQEEVESNAVEVHVHNLRAKI-----GKHTIETVRGLGYRMRAPA 220 >gi|262203938|ref|YP_003275146.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087285|gb|ACY23253.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 231 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L ++ + L + F V G + + + ++LDLGL D+ G Sbjct: 5 VRVLVVDDEPQLLRALRINLNARGFAVTTAADGREALTAASRMDPHVVVLDLGLPDMDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL LR + PV +LS S DKV L +GADDY++KPF EE +AR+RA VRR Sbjct: 65 TVLEGLR-GWTTVPVIVLSARSDAADKVSALDAGADDYVTKPFGMEEFLARLRAAVRRGA 123 Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S G + +V G V+L AK V G RIHLT E++++E+L + ++++ LN Sbjct: 124 VSSGLPEVPMVDAGSFQVDLAAKQVTRHGERIHLTPTEWEILEILVRNEGKLVSQKEILN 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V++ LR+KL + ++ T G GY Sbjct: 184 SVWGPTYLGQSNYLRVYLASLRRKLEDDPVHPRHLITEAGMGY 226 >gi|163840387|ref|YP_001624792.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162953863|gb|ABY23378.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 242 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 119/218 (54%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ALA I ++L+++ F + G +E+ + + D ++LDL L I G E Sbjct: 22 RILVVDDDEALAEMIGIVLRNDGFEPFFCADGSQALEVFRAGKPDLVLLDLMLPGIDGIE 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ PV +L+ + D VRGL+SG DDY+ KPF ELVAR+RA +R Sbjct: 82 VCRLIR-AESDVPVVMLTAKADTSDVVRGLESGGDDYVPKPFKPAELVARVRARLRPGDQ 140 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + D+++++ V RI LT E+ ++ L+ + T+E+ L ++ Sbjct: 141 KTPETLKIADITIDVAGHVVARGETRISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 200 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 201 RHAADTRLVNVHVQRLRSKIEIDPEAPEVVLTVRGVGY 238 >gi|126652243|ref|ZP_01724422.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905] gi|126590975|gb|EAZ85087.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905] Length = 234 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD A+A+ I++ L ++ + + G ++ + D ILDLGL DI G E Sbjct: 4 RILVVEDDVAIANLIKMTLATQQYEFDIAQDGNRALQKAITMKPDVYILDLGLPDIDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 ++ +R + TP+ ++S DK+ L +GADDY++KPF+ EEL+ARIR +RR+ Sbjct: 64 LITKIR-SWTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVALRRAAY 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S G L +N +TV V G IH+T EY+++ +LS LT L Sbjct: 123 EHPPEQENSTFTNGYLQINYVDQTVLVNGKEIHVTPIEYKLLVVLSKHVGKVLTHNFILK 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ + ++ + VF+ LRKK+ I+T GY + +DE Sbjct: 183 EIWHNALQSDIPSLRVFMATLRKKIEADPAQPKLIQTHVRVGYRMLRYHEDE 234 >gi|163942811|ref|YP_001647695.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865008|gb|ABY46067.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 225 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++ A I L E + + G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSFAKKIVSGLTQEGYFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R +R+ K +TP+ I++ S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN + Sbjct: 122 IQQNETNFFQFKDLFVDASSHIVKKGGKNLTLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKRDR-YIQTIHGRGYSMIE 225 >gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] Length = 233 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++AI+RR+ Sbjct: 63 VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDL 121 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + IV GDL + DA V+ G + LT +E++++ L+ +T+E Sbjct: 122 TIENQEAEAAPTEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232 >gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 236 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 132/236 (55%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G Sbjct: 2 VKILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEKPDLIVLDLMLPEMDGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K+ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 62 EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + ++ V + + LT KE++++ L+ + + Sbjct: 122 GKAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKM-ENVK 236 >gi|217077821|ref|YP_002335539.1| response regulator receiver [Thermosipho africanus TCF52B] gi|217037676|gb|ACJ76198.1| response regulator receiver [Thermosipho africanus TCF52B] Length = 217 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD L +EL K E V + GED I + ++ D ++LD+ L DI G Sbjct: 1 MKILVVEDDDKLRRLLELEFKHEKCTVKTCEYGEDAIIEYQEFKPDVVVLDIMLPDIDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R S + +L+ +S ++K+ G +SGADDY+ KPF+ EEL AR++AI RR Sbjct: 61 EVAKKIRKLDPSAGIIMLTALSEKKNKLEGFESGADDYVVKPFDFEELFARVKAIARRKN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I DL +N+ + V +G I+L+ E+ ++ L ++KE L+ ++ Sbjct: 121 ITLNDEIKIKDLIINISKREVIFKGKPINLSKTEFDLLAYLVKNAGRVVSKEEILDAVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++V+I LRKKLS+ + I+TV G GY + Sbjct: 181 ISYEGSENTVEVYINYLRKKLSS-----DIIKTVRGIGYTI 216 >gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753] gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753] Length = 229 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 130/221 (58%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++DDK + + L L+ E + V + + G++ +EL + + + I+LD+ L + G++ Sbjct: 5 KIMVVDDDKNICELLRLYLEKEGYQVVIANDGKEAVELNEKEDPELILLDIMLPQLDGWQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R K P+ +L+ + DKV GL+ GADDYI KPF +E+VARI+A++RR+ Sbjct: 65 VCREIR-KKSQVPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRRTGQ 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +G A + LS+NL ++V G ++ KE ++I L+ N T++ L+ + Sbjct: 124 NQGEAVKEVKYDKLSINLTNYELKVNGVQVDTPPKEMELIYHLASNPNRVFTRDQLLDEV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + +DV + +LR+KL + K ++TVWG GY Sbjct: 184 WGFDYYGDSRTVDVHVKRLREKLEGVS-DKWALKTVWGVGY 223 >gi|154251400|ref|YP_001412224.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155350|gb|ABS62567.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 225 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 130/228 (57%), Gaps = 12/228 (5%) Query: 1 MRILLIEDD-KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+IEDD +A A+ ++ + +S + + D GE+G+ FD +I+D L G Sbjct: 1 MRILVIEDDLEAAAYVVKGLRESGHIVDHAAD-GEEGLTFALSSTFDVMIVDRMLPKRDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V+ LR + TPV LS + ++D+++GL++G DDY++KP+ EL+ARI +VRR+ Sbjct: 60 LSVVETLREECVRTPVLFLSALGEVDDRIKGLKAGGDDYLTKPYAFAELLARIEVLVRRA 119 Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + G L ++L A+ V G I L +E++++E L +T+ M L ++ Sbjct: 120 NPDQVRTRLQVGSLEIDLLARKVIRDGTEIDLQPREFRLLEYLMKHAGQVVTRTMLLENV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222 ++ +P+ +IDV I +LR K+ KN+ + TV G GY LR Sbjct: 180 WEYHFDPQTNVIDVHISRLRAKID-----KNFEQPLLHTVRGAGYSLR 222 >gi|88856021|ref|ZP_01130683.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814888|gb|EAR24748.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 250 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 126/228 (55%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R ++++D+ +L + + L+ E ++V + G + + + D ++LD+ + + G Sbjct: 24 IRAVVVDDEDSLTDLLSMALRYEGWDVRLASDGPQALATIREFRPDVVVLDIMMPGLDGL 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR I TP+ L+ S++D++ GL G DDY++KPF+ EELVAR+RA++RRS Sbjct: 84 AVLTRLRADGIQTPILFLTAKDSVDDRIAGLTVGGDDYVTKPFSLEELVARLRALLRRSS 143 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G + +I GDL+ LD T EV G R+ LT E++++ L L++ Sbjct: 144 ITIAGDSNPVIEVGDLT--LDESTYEVARGGTRVELTATEFELLRYLMRNPRRVLSRAQI 201 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ +++++I LRKK+ G I TV G GY+L+ Sbjct: 202 LDRVWSYDFGGRASVVEIYISYLRKKIDVL--GPPMIHTVRGVGYMLK 247 >gi|326446905|ref|ZP_08221639.1| response regulator receiver [Streptomyces clavuligerus ATCC 27064] Length = 220 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ +A +E+ L+ E V V GE +E Y++DA++LD L + G Sbjct: 1 MRVLVVEDERYMARVLEIGLRREAIAVDVAHDGEAALERLTVYDYDAVVLDRDLPGVHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R + ++ V +L+ + DKV GL GADDY++KPF+ ELVAR+RA+ RRS Sbjct: 61 EVCRRIVAMRLECRVLMLTAAGRLGDKVEGLGLGADDYLAKPFDFPELVARLRALYRRSP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL+ + + V G + LT KE ++ELL L+ E L+ +D Sbjct: 121 MAHAPVLTFADLAFDTHRRRVLRAGREVRLTPKELAVLELLMRADGGVLSAEHLLDKAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P + + + LR+KL G + T GY L Sbjct: 181 AYADPLTNAVRLVVHTLRRKL----GEPRLVHTAISAGYYL 217 >gi|212716927|ref|ZP_03325055.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM 16992] gi|212660212|gb|EEB20787.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM 16992] Length = 243 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 125/231 (54%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + IE+ + + D I+LD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I+TPV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 69 TRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLR 222 + I++ +I LRKK+ + G K IET G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGLTVEDENGEKRKVAPLIETKRGIGYMIR 239 >gi|206978118|ref|ZP_03239001.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962156|ref|YP_002340726.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141404|ref|ZP_04269942.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26] gi|229198829|ref|ZP_04325523.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293] gi|206743654|gb|EDZ55078.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068304|gb|ACJ82554.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228584665|gb|EEK42789.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293] gi|228642185|gb|EEK98478.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26] gi|324328564|gb|ADY23824.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 229 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|311894023|dbj|BAJ26431.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I+ L++E F V G G+ + +D +ILD+ L + G+ Sbjct: 1 MRVLVVEDEQRLALAIKHGLEAEGFTVDTVHDGLSGLARATDHSYDVVILDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A + +L+ D+ L +GADDY+SKPF+ LVAR++A+ RR Sbjct: 61 RVCARLRAAGSDAGILMLTAKDGEWDEAEALDTGADDYLSKPFSFVVLVARLKALARRIG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A V GDL V+ A+T G I LT +E+ +++ L+ R ++K L ++D Sbjct: 121 SRAPRRAVLGDLVVDSAARTCSRAGRPIALTPREFAVLDHLARRAGEAVSKREILEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++V I LR+K+ + G++ ++TV G GY L + Sbjct: 181 AAADSDPNTVEVHISALRRKI-DTPFGRSALQTVRGAGYRLEPD 223 >gi|229119669|ref|ZP_04248936.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228663784|gb|EEL19358.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 225 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++LA I L E + + G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSLAKKIVSGLTQEGYFILKIHNENQGLNIIYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + R +R+ K +TP+ I++ S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS Sbjct: 63 ICRQIRLVK-TTPIIIVTNNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + DL V+ + V+ G + LT +EY ++ L KN L +EM L+ + Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLLFLIKNKNKILHREMLLDQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYKVVVSPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 225 >gi|197123400|ref|YP_002135351.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196173249|gb|ACG74222.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 234 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 4/221 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 LL+EDD LA L+ V G G++ FD ++LDL L G EV Sbjct: 10 LLVEDDLRLAAFTREYLEGHGVAVVHASDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR ++ PV +L+ D+V GL+ GADDY++KPF+ EL+ARIRA+VRR+ G A Sbjct: 70 RELR-SRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGRA 128 Query: 124 ---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G L V+ A+ V + G + LTG E+ ++ L+ R L +E + Sbjct: 129 GPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAGG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E + +DV + +LR+KL + I+TV G GY+L Sbjct: 189 SAEEAFDRSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229 >gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] Length = 243 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I L+EDD +A ++L LK E + + G +E + + +DA+ILDL L + G E Sbjct: 9 KIFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKHVWDAVILDLMLPGVDGLE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY++KPF+ EL+AR++A+ RR Sbjct: 69 ICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQEA 128 Query: 122 HAQSL-IVTGDLSVN---LD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +Q+L + G +SV+ +D A+ V G I LT +E+ ++ + +++ L Sbjct: 129 MSQNLRMEAGIVSVHGVEIDPLAREVRQHGKSIDLTPREFDLLYFFARHPGEVFSRQALL 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + E ++ I +LR K+ A I TVWGRGY L Sbjct: 189 DQVWGYQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 234 >gi|269215547|ref|ZP_06159401.1| DNA-binding response regulator DltR [Slackia exigua ATCC 700122] gi|269131034|gb|EEZ62109.1| DNA-binding response regulator DltR [Slackia exigua ATCC 700122] Length = 230 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 M+ L++EDD LA ++ +L N N YVTD+ G+DG + +D +ILD+ L Sbjct: 1 MQALIVEDDVRLASALARIL---NENGYVTDVVHDGQDGYDYASSGIYDIVILDVMLPRK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G V+ LR A+I TPV +L+ S I DK+ GL SGADDY++KPF+ EL+A +RA+ R Sbjct: 58 NGCRVVEELRRARIDTPVLMLTARSEIPDKIEGLDSGADDYMTKPFSPAELLAHLRALTR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R I GDLS+N+D++ + G I L+ KE+++ +L ++K+ ++ Sbjct: 118 RQGQVVFERIEAGDLSLNIDSRDLSCNGKSIALSFKEFELARILFSNPGQIVSKDTLISK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ ++ LRKK+ G + I+T+ GY Sbjct: 178 VWGVESTAVDNNVEAYVSFLRKKIRFLGSGVS-IDTIRKAGY 218 >gi|331091534|ref|ZP_08340371.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403699|gb|EGG83253.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium 2_1_46FAA] Length = 241 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+ + + I L+ E + + G+ I L D I++DLGL D+ G EV Sbjct: 9 VLVVEDDEPIRNLIVTTLEMEKYKFDTAENGKQAIMLAAANNPDIILMDLGLPDMDGIEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R +R + P+ ++S S DKV L GADDY++KPF+ EL AR+RA +RR Sbjct: 69 IRKIRSWSV-VPIIVISARSDERDKVAALDVGADDYLTKPFSVVELSARLRATIRRVQYI 127 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +S+ GDL ++ A V+V G IHL EY ++ LL+ LT + L Sbjct: 128 MHTDNTNESMFQNGDLMIDYSAGVVKVSGVEIHLMPLEYSLLCLLAQNVGKVLTYQFILE 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V++ LRKKL + YI+T G GY Sbjct: 188 KVWPNGIGSDISSLRVYMTSLRKKLEKDKANQTYIQTHIGVGY 230 >gi|313887875|ref|ZP_07821554.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846041|gb|EFR33423.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 227 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+ED++++ +++ L+ E + ++ GE+GIE+ + D ++LD+ L I GFE Sbjct: 4 KVLLVEDEESIRKFVKINLEREGYTIFEAGSGEEGIEIARRELPDIVVLDIMLPGIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR S + +L+ + DK+ GLQ G DDY++KPFN EL RI++I RR Sbjct: 64 VCKTLRGEFPSLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSIERRLEI 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +LI ++ ++ + LT EYQ+I++ +T+ L + Sbjct: 124 GEENESNLITDPPFKIDSYSRKFYKDDVELELTPTEYQIIKIFMTNPGKAMTRNEILKLV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + KI+DV I +LR K+ +YIETVWG GY Sbjct: 184 WGDDFLGDSKIVDVNIRRLRSKIETNPAKPDYIETVWGTGY 224 >gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 250 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 4/232 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ EDD+ A I + L+ E V G I+ + D I+LD+ + + G + Sbjct: 4 RILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRARTTRPDLIVLDVMMPQVDGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ ++ ED + GL GADDY++KP++ EL AR+RA++RRSR Sbjct: 64 VCRILRTDS-QVPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALLRRSRA 122 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +LI G L ++ V + G I LTGKE+ ++ LL+ T+ ++ ++ Sbjct: 123 ITGEPTLIRAGALEIDTACFEVRLAGELIALTGKEFAILALLAAEPGRAFTRAQIIDRVF 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230 + +D + LR+KL G +ETV+GRGY L + ++ Sbjct: 183 GFEQNVLERTVDAHVMNLRRKLEQRGPGAPRMVETVYGRGYRLADPGREPNA 234 >gi|154251384|ref|YP_001412208.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155334|gb|ABS62551.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 223 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L + L+ + V GE+G L +DA++LDLGL ++ G Sbjct: 1 MRLLVVEDDPDLNRQLVSALEDAGYVVDSAKDGEEGHYLGDTEPYDAVVLDLGLPEMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R PV IL+ DKV G +GADDY++KPF EE++AR+RA++RR+ Sbjct: 61 TVLEKWRRDGRVMPVLILTARDRWSDKVAGFDAGADDYVAKPFFMEEVLARLRALLRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G + V+ + V V G I LT EY+++ + + +++ + HLYD Sbjct: 121 GHASSELECGPVRVDTRSSRVTVNGRAIKLTSLEYRLLSYMMHHQGRVISRTELVEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ +LR+KL GK+ IETV G GY L Sbjct: 181 QDFDRDSNTIEVFVGRLRRKL-----GKDVIETVRGLGYRL 216 >gi|186473343|ref|YP_001860685.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184195675|gb|ACC73639.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 226 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 132/227 (58%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 M+ILL+ED++ +A ++ L V D G DG+ L +DAI+LD L I G Sbjct: 1 MKILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGETYDAIVLDRMLPGGIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ALR + PV ILS + +++++RGL++G DDY+ KPF+ E+VAR+ A+ RRS Sbjct: 61 LSIVAALRASGNKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRS 120 Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++ + DL ++L ++ V G I L +E++++E L +T+ M L ++ Sbjct: 121 QDNNFETTLKVADLCIDLLSRKVMRAGKAIVLKPREFKLLEYLMRHAEQVVTRTMLLENI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ +P+ +IDV + KLR+K+ + ++ + T+ GY+L A Sbjct: 181 WEYNFDPQTNVIDVHVSKLRQKI-DIGFERSLLRTIRNAGYMLTAAA 226 >gi|312888380|ref|ZP_07747956.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311299214|gb|EFQ76307.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 235 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL ED++ L +I+L L+ E + V + G+ ++ K F+ +ILD+ + +I GF Sbjct: 6 RILLAEDEEHLLEAIKLNLELEGYKVSTANNGKKALQKFKEERFNLVILDVMMPEIDGFV 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 V +R+ P+ L+ ++ EDKV GL+ GADDY++KPFN EEL+ R+ +V+RS + Sbjct: 66 VAETIRLENSEVPIMFLTAKNTTEDKVAGLKKGADDYLTKPFNLEELILRVNNLVKRSLK 125 Query: 121 GHAQSLIVT---GDLSVNLDA-KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + GD +++ ++ + V G LT KE +++LL R+N +++E L Sbjct: 126 GDALKEFNSYKIGDKTIHFNSFELVNADGSITPLTKKETMLLKLLIERRNDAVSREQILE 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ P + ID FI RK Y ++ G GY +N Sbjct: 186 TVWNYDVYPSTRTIDNFILTFRKYFEPDPKSPVYFHSIRGVGYKFTDN 233 >gi|311279965|ref|YP_003942196.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749160|gb|ADO48912.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 224 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLQELGHQV---DAAEDAKEADYYLGEHVPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S P+ +L+ +DKV L +GADDY++KPF+ EE+ ARI+A++R Sbjct: 58 DGLSMIRRWRSHDVSLPILVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVAARIQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVITIPPFQVDLSRRELSIHDEVIKLTAFEYTIMETLIRNSGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A ++ I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYAQDVITTVRGQGYLF 220 >gi|317152822|ref|YP_004120870.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316943073|gb|ADU62124.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 236 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 128/232 (55%), Gaps = 18/232 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLI+DD LA + L+ E F + T GE G+ + E+ IILD+ L D GF Sbjct: 3 KVLLIDDDPELAELLGRYLEGEGFALDATYNGESGLAQARSNEYCLIILDVMLPDTSGFN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL LR + PV +L+G D+V GL+ GADDY+SKPF EL+AR+RA++RR Sbjct: 63 VLSRLR-GDSAVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFPLRELLARMRAVLRRVGP 121 Query: 119 SRG--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 RG Q I G++ +N A+ V + +HLT E+ +IE L+L + Sbjct: 122 ERGDGDPQQPPRPQGDIKVGEILINRGAQQVTLSDAPVHLTSTEFGLIEQLALNLGNIVQ 181 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E + GRD + + +++V + LR+KL GG I+T+ GRGY+L Sbjct: 182 REDLMEKAL-GRDTDFDDYVLNVHMSNLRRKL----GGHASIKTIRGRGYLL 228 >gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 227 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + + L+ ++ V G++ + D I+LD+GL ++ GF Sbjct: 1 MKILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAAREAPDLIVLDIGLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ L+ D + GL+ GADDY++KPF+ ELVARI+AI +RSR Sbjct: 61 EVCRRIR-QRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIAKRSR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G L+++ A + G I LT +E +++LL+ +K ++H++ Sbjct: 120 ANGTVPVNHGALTLDPQAHRCWLNGQEIALTAREQSILQLLTKAPGRLCSKPELIHHIWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +D + LR K S AG IETV G G LR++ + Sbjct: 180 AGSQVSDRTLDSHLRNLRGKFSE-AGNPELIETVHGAGIRLRDSGQ 224 >gi|152994457|ref|YP_001339292.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150835381|gb|ABR69357.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 229 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD I+ L + + V V G+D + ++ IILD L + G Sbjct: 1 MRILVVEDDIVTQGFIKKGLTEQGYQVDVASDGQDALFQALEGDYQLIILDRMLPKLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR A+ + PV ILS + S++++V+GL+ G DDY+ KPF EL+AR+ ++RR Sbjct: 61 TVLNTLRSAQKTLPVLILSALDSVDERVKGLREGGDDYLVKPFAFAELLARVEILIRRQP 120 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A +L+ DL ++L + V G I L KE+Q++ L +T+ + Sbjct: 121 MAAVQQSTLLQVSDLKMDLLTRQVWRAGREISLQPKEFQILRYLMEHPKQVVTRTLLFEA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D +P+ +IDV + +LRKK+ +ET+ G GY L E A Sbjct: 181 VWDYDFDPQTNVIDVHVARLRKKVET-DDLPPILETIRGVGYRLVEKA 227 >gi|119473456|ref|ZP_01614965.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium TW-7] gi|119444467|gb|EAW25798.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium TW-7] Length = 229 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 127/228 (55%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+I+DD L + L S+ F + GE G++L + ++ I+LD+ L I GF Sbjct: 1 MKLLMIDDDTGLCELLSEYLSSQGFEIQSVHDGEQGLKLAQANDYALILLDVMLPTIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR K+ TPV +L+ D++ GL+ GADDYI KPFN EL+AR++AI RR Sbjct: 61 EVLKQLRQTKL-TPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIE 119 Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H SL ++ +++NL A+ + + + LTG EY+++ LL + ++KE Sbjct: 120 -HINSLNINTTNKLLVNGVTINLAAREASIDENTLTLTGTEYEILALLCKNASQVVSKEQ 178 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R + ID+ + +RKK++ + I+T+ G GYV Sbjct: 179 ISEEVLGRRLASFDRSIDMHVSNIRKKIAEHIKTER-IKTMRGSGYVF 225 >gi|145594043|ref|YP_001158340.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303380|gb|ABP53962.1| response regulator receiver [Salinispora tropica CNB-440] Length = 222 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I L+ V V G+ G E+ +D ++LD L +PG Sbjct: 1 MRVLVVEDERNLADAITRGLRKRGMAVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGVPGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ L + T V +L+ ++ D+V GLQ GADDY+ KPF +ELVAR++A+ RR+ Sbjct: 61 QICAELAASGTLTRVLMLTASGTVADRVEGLQLGADDYLPKPFAFDELVARVQALGRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ DL ++ +T + LT KE+ ++ L ++ E L ++D Sbjct: 121 PAAPPVLAVADLVLDPARRTATRADVPVDLTNKEFGVLHELVKAGGAVVSSEELLERVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +P I+ V + LR+KL G IETV G GY + E A Sbjct: 181 ANTDPFTTIVRVTVRTLRRKL----GDPPLIETVVGAGYRVAEAA 221 >gi|69247564|ref|ZP_00604398.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|227552548|ref|ZP_03982597.1| VicR family response regulator [Enterococcus faecium TX1330] gi|258614681|ref|ZP_05712451.1| DNA-binding response regulator VicR [Enterococcus faecium DO] gi|293378479|ref|ZP_06624642.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293553004|ref|ZP_06673649.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|293559841|ref|ZP_06676356.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293567713|ref|ZP_06679056.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294616677|ref|ZP_06696447.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|294619190|ref|ZP_06698676.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium E1679] gi|294623110|ref|ZP_06701996.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|68194788|gb|EAN09265.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|227178297|gb|EEI59269.1| VicR family response regulator [Enterococcus faecium TX1330] gi|291589648|gb|EFF21453.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291590431|gb|EFF22170.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|291594572|gb|EFF25963.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium E1679] gi|291597479|gb|EFF28644.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291602810|gb|EFF33017.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291606205|gb|EFF35624.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|292642808|gb|EFF60955.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 234 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ ++ L E ++VY GE+ +E E D I+LDL L + G E Sbjct: 3 KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVR-KTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A+ + + GDL+++ +A V +G I LT +E++++ L+ +T+E Sbjct: 122 AAKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + NY+ T G GY LR Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLR 229 >gi|332139716|ref|YP_004425454.1| probable two component response regulator transcription regulator protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327549738|gb|AEA96456.1| probable two component response regulator transcription regulator protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 227 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 128/228 (56%), Gaps = 1/228 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ I+ L F V + G DG +++ I+LD+ L DI G+ Sbjct: 1 MKILVVEDEVKTGDYIKQGLIESGFVVELVRTGLDGHHKSMIGDYELIVLDVMLPDIEGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L +LR + TPV L+ + D+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 KILSSLRESGKFTPVLFLTARDHVNDRVKGLELGADDYLVKPFAFAELLARVRTLIRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL +++ ++ + G I+LT KE+ ++EL+ R+ L + + + ++D Sbjct: 121 SVPNNTLHIADLELDIPSRVAKRGGKVINLTTKEFTLLELMVRRQGEVLPRSLIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + +IDV I +LR K+ + K I+TV G GY + + +E Sbjct: 181 MNFDSDTNVIDVAIRRLRAKIDDDFPVK-LIQTVRGMGYKMSVDDSNE 227 >gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU121] Length = 241 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 129/237 (54%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F + G++ +L ++ I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 65 ATQLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 TPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ ++ + I+TVWG GY N DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNKVSSDAAHMIQTVWGVGYKFEVNTNDEPA 240 >gi|312890843|ref|ZP_07750372.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311296626|gb|EFQ73766.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 227 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED+ LA I L N D G G+E ++D ++LDL L + GF Sbjct: 1 MKILLVEDEAKLAGFIADALNQAGHNCDHLDDGTKGMEAAMVNDYDLLLLDLMLPSMNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ALR TPV ILS ++ E+ ++GL GA DY+ KPF+ EEL+AR+RA++RRS Sbjct: 61 EVIKALRSFNNETPVIILSALNDTENVIKGLDLGAIDYLKKPFDLEELLARVRAVLRRSL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL V+L ++ V I L+ +E+ ++E L N +TK L ++D Sbjct: 121 AQGSLKLQVEDLKVDLLSREVSRNNVNIILSNREFALLEYLLSNPNKVVTKSQILEKVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P +++V + +LRKK+ + I TV GRGYVL+ Sbjct: 181 INFDPGSNVVEVHLYQLRKKMDRGFAVE-LIHTVIGRGYVLK 221 >gi|311106814|ref|YP_003979667.1| transcriptional regulator QseB 3 [Achromobacter xylosoxidans A8] gi|310761503|gb|ADP16952.1| transcriptional regulatory protein QseB 3 [Achromobacter xylosoxidans A8] Length = 220 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 120/220 (54%), Gaps = 7/220 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD L ++ L +V +V D+ + + L + + F A++LDLGL D G Sbjct: 1 MRVLLVEDDAMLGDAVHTSLAQSGADVQWVRDVAQARLALVE-HGFHAVLLDLGLPDGSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ LR +TPV IL+ + ++++GL +GADDYI KPF +EL+AR+RA+VRRS Sbjct: 60 LAVLKHLRARYDATPVLILTARDRLSERIQGLDAGADDYIVKPFQLDELLARLRAVVRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + D+ + + V G + L+ EY+ + L R T+++E +Y Sbjct: 120 SNAVVSALRCRDVVLEPAKRAVTRDGVEVSLSAHEYRTLLALMERIGHTVSREQLEAAVY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + V+I +LR+KL G I TV G GY Sbjct: 180 GDSGAIESNTVAVYIHQLRRKL-----GDKLILTVHGLGY 214 >gi|226312462|ref|YP_002772356.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095410|dbj|BAH43852.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 217 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++EDD A+A+ I+L L + N+ V GE+ + + + FD I+LD+ L + GF Sbjct: 2 IKILVVEDDIAVANLIKLNLNTANYESTVVFDGEEALNVIERDRFDLILLDVMLPKVDGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + ++ + PV L+ SS+ DKV GL++G DDY++KPF EL+ARI ++R Sbjct: 62 TLFE--KIKPLGIPVIFLTAKSSVTDKVYGLKAGVDDYMTKPFEGIELLARIENVLRHYN 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++I D V L+ V+ G I LT KE++++ L KN LT+E + ++ Sbjct: 120 KKS-NIINFKDTEVYLEEMKVKKNGEMIELTLKEFELLVFLVQNKNIVLTREKIIEKIWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ID I KLRKKL G K+ I+TV+ GY L E Sbjct: 179 YDYVGETRTIDNHIQKLRKKL----GWKDEIKTVFKLGYRLEE 217 >gi|28211098|ref|NP_782042.1| transcriptional regulatory component of sensory transduction system [Clostridium tetani E88] gi|28203538|gb|AAO35979.1| transcriptional regulatory component of sensory transduction system [Clostridium tetani E88] Length = 230 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD LA+SIE L E FN+ D + + K FD IILD+ L D G++ Sbjct: 4 ILLVEDDSILAYSIEYTLNGEGFNLKCADSIKKARDNFKENSFDLIILDVMLPDGNGYDF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R A PV L+ + V GL GADDYI+KPF +EL++RIRAI+RRS+ Sbjct: 64 CKEIRKAS-EVPVIFLTACDEEANVVIGLDIGADDYITKPFRIKELISRIRAILRRSKTF 122 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L+++GD+ V +E I LT EY+++ + L++ + L L+D Sbjct: 123 SKDLDLLISGDIKVQTLQGKIEKNDKEIILTALEYRLLLIFINHPKQILSRNIILEELWD 182 Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + + V+I +LR+K+ + AG YI T G GY Sbjct: 183 AEGEFVDDNTLSVYIRRLREKIEDNAGEPKYITTHRGLGY 222 >gi|83954225|ref|ZP_00962945.1| two-component response regulator [Sulfitobacter sp. NAS-14.1] gi|83841262|gb|EAP80432.1| two-component response regulator [Sulfitobacter sp. NAS-14.1] Length = 224 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDDK + + L+ E V + G+D + +D +I+D L + G Sbjct: 2 MKILVVEDDKMTGNYVAEGLREEGHTVDLMTDGKDALLQASTTSYDILIVDRMLPGLDGV 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ +R K TPV L+ + ++D++ GL +G DDY+ KPF EL AR+ A+ RR R Sbjct: 62 SVVKTMRGTKNQTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPR 121 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +++ GDL ++L + V G I L +E+ ++E L RK T+ M L ++ Sbjct: 122 GTQDEIVLRAGDLEMDLVRRKVTRAGQPIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRE 223 D +P+ +++ I +LR K+ K Y I+TV G GY + E Sbjct: 182 DISFDPQTNVVETHISRLRAKVD-----KPYEVELIKTVRGAGYRIEE 224 >gi|94310689|ref|YP_583899.1| two component heavy metal response transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354541|gb|ABF08630.1| DNA-binding response regulator in two-component regulatory system with AgrS [Cupriavidus metallidurans CH34] Length = 224 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ + L +F V + G DG+ ++D +ILD+ L + G+ Sbjct: 1 MKILVIEDEPKTGEYLRKGLTESSFVVDLASTGRDGLHHAIDGDYDLVILDVMLPGMNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR K TPV L+ +ED+V+GL+ G DDY++KPF EL+AR R ++RR Sbjct: 61 EVLKELREHK-DTPVLFLTARDEVEDRVKGLELGGDDYLAKPFAFVELLARARTLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I DL ++L V G RI L+ +E+ ++ L+ R L++ +H++D Sbjct: 120 TREAERIEIEDLEIDLLRHRVSRGGIRIDLSPREFALLHFLARRHGEVLSRTQIASHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV I +LR K+ + K I +V G GYVL Sbjct: 180 MNFDSDTNVVDVAIRRLRAKMDDTYAPK-LIHSVRGIGYVL 219 >gi|310828642|ref|YP_003960999.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308740376|gb|ADO38036.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 228 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 130/227 (57%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+ I++ L E + V G++ IE + +E D I+LD+ L + G++ Sbjct: 4 KILVVDDEAAIVDLIKMELDFEGYQVETAYDGQEAIEKAQSFEPDLIVLDIMLPKVNGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + L + P+ +L+ + I DKV GL+ GADDY++KPF+ EL+ARI+A +RR+ Sbjct: 64 VCKTL-TPMMDVPIILLTAKTDIIDKVLGLELGADDYLTKPFDNRELLARIKAHLRRATK 122 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++I G LS+ D +TV + G +HLT KE+ ++ LL+ ++ L Sbjct: 123 APAAKKTDAVIKNGPLSIMPDERTVLLDGKEVHLTPKEFDLLYLLASNLEQVFPRDTLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +D+ + ++R+K+ +I+TV+G GY +R+ Sbjct: 183 KIWGYDYYGDTRTVDMHVQRIRRKIDTQPN--KFIQTVFGIGYKMRK 227 >gi|170721590|ref|YP_001749278.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169759593|gb|ACA72909.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 226 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L IEDD I L S V D G +G+ +D I LD L ++ G Sbjct: 3 RVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIGGGYDLITLDRMLPEVDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 ++ LR KI+TP+ ++S +S ++++VRGL++G DDY++KPF +E+ AR+ ++RR S Sbjct: 63 IVTTLRNLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSV 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + DL ++L + ++L EY+++E L +T+ M ++ Sbjct: 123 PMTQTRLQVADLQLDLISHEARRGDQTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ ++ G I TV G GY + E Sbjct: 183 YHFDPGTNLIDVHIGRLRKKI-DSPGQSPLIRTVRGSGYAIAE 224 >gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL S4-171] Length = 240 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 132/236 (55%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ ++ ++ ++ F V + G G EL + D I+LDL L ++ G Sbjct: 6 VKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K+ P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 66 EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ I+ GDL + ++ V + + LT KE++++ L+ + + Sbjct: 126 GKAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 185 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ L+ +++ E +I+DV + LR K+ YI+T+ G GY + EN K Sbjct: 186 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKM-ENVK 240 >gi|300859158|ref|YP_003784141.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686612|gb|ADK29534.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302206852|gb|ADL11194.1| Two-component system, OmpR family, response regulator PhoP [Corynebacterium pseudotuberculosis C231] gi|302331414|gb|ADL21608.1| Two component system response regulator protein [Corynebacterium pseudotuberculosis 1002] gi|308277104|gb|ADO27003.1| Two component system response regulator protein [Corynebacterium pseudotuberculosis I19] Length = 237 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + LK + F+V + G + +E+ K ++ DA ILD+ + + G+E Sbjct: 10 RILVVDDEPNIVELLNVSLKFQGFDVATANSGVEALEIAKEFKPDAFILDVMMPGMDGYE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + PV L+ ++E ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 70 LLPKLRAEGLDGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGSS 129 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S +V DL++N D V G + L+ E+ ++ L L ++K L+H Sbjct: 130 VEMVEDDSTLVYADLTLNDDTHEVTKAGKVVDLSPTEFNLLRCLMLNAEVVMSKAKILDH 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +++ +I LR+K+ I+TV G GYVLR+ Sbjct: 190 VWHYDFGGDGNVVESYISYLRRKIDTH--DPQLIQTVRGVGYVLRK 233 >gi|255324956|ref|ZP_05366064.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255298016|gb|EET77325.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 279 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 53 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAMDEARRFSPDVVVLDLGLPELDGLE 112 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + +L+ S +DK+ GL GADDYI+KPF+ ELV R+ A++RR R Sbjct: 113 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 171 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ GDL ++ A V V + LT E++++ L+LR LT+ + Sbjct: 172 SITPPQVTTPLIVGDLILDPVAHEVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 231 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +I+TV G GY Sbjct: 232 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 274 >gi|312794585|ref|YP_004027508.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877755|ref|ZP_07737707.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311795474|gb|EFR11851.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|312181725|gb|ADQ41895.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 230 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I+ L+ E + V + GED + K FD ++LD+ L + GF V Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKLDGFSV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +++ + DKV GL+ GADDYI+KPF EL+ARIRA +RR+ Sbjct: 66 CKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQS 124 Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ G L++N + V+ G I LT +EY++++ L +K ++E L ++ Sbjct: 125 ASQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +V+ +DV + +LR+K+ + N+I T G GY N Sbjct: 185 DYEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229 >gi|258591200|emb|CBE67497.1| response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 253 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ++LIED++ + + L S+ + ++ GE+G+ D +ILDLGL DI G EV Sbjct: 29 VVLIEDERPIRRFLRATLVSQGYRLFEAATGEEGLAEAAARPPDVVILDLGLPDIDGLEV 88 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 +R LR + P+ +LS DK+ L +GADDY+SKPF EL+AR+R ++R + Sbjct: 89 IRRLR-EWTAVPIIVLSARGQERDKIAALDAGADDYVSKPFGVGELLARMRVVLRHAARN 147 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GDL V+L + V V G +HLT EY+++ L +T++ L + Sbjct: 148 LTENTDPTFAVGDLHVDLAVRRVVVGGREVHLTPIEYRLLTTLIHYAGKVVTQQQLLKEV 207 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + + V++ +LR+KL Y+ T G GY L Sbjct: 208 WGPQCTEQAHYLRVYVAQLRRKLETDPARPCYLLTEPGVGYRL 250 >gi|169831576|ref|YP_001717558.1| two component transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638420|gb|ACA59926.1| two component transcriptional regulator, winged helix family [Candidatus Desulforudis audaxviator MP104C] Length = 231 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 124/229 (54%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELM---LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 RIL++ED+K H +ELM L+ E F V + G+ +E+ D ++LD+ L + Sbjct: 3 RILVVEDEK---HIVELMRYGLEKEGFQVVEANDGDRALEMVHTGRIDLVVLDIMLPGLD 59 Query: 59 GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G V R LR + + PV ILS D+V GL+ GADDYI+KPF+ ELVAR++A + Sbjct: 60 GLTVCRLLRQNERTRDIPVIILSARGQELDRVLGLELGADDYITKPFSVRELVARVKARL 119 Query: 117 RR--SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RR A+ GDL V+ + VE G R LT E++++ +L+ ++E+ Sbjct: 120 RRHVPVQEARKTARFGDLVVDPERLAVEAAGKREQLTPTEFELLWVLAGSPGRVFSRELL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + + +DV I +R+KL G YIETV G GY RE Sbjct: 180 LQKVWGYDYTGDSRTVDVHIRHVRQKLQRLPGSPQYIETVRGVGYRFRE 228 >gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] Length = 231 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227 >gi|27367386|ref|NP_762913.1| response regulator [Vibrio vulnificus CMCP6] gi|320159231|ref|YP_004191609.1| DNA-binding heavy metal response regulator [Vibrio vulnificus MO6-24/O] gi|27358955|gb|AAO07903.1|AE016811_144 Response regulator [Vibrio vulnificus CMCP6] gi|319934543|gb|ADV89406.1| DNA-binding heavy metal response regulator [Vibrio vulnificus MO6-24/O] Length = 231 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 126/232 (54%), Gaps = 6/232 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+K + L + V + G DG+ +D I+LD+ L + G+ Sbjct: 1 MKLLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVMLPHLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRALR ++ TPV +L+ +ED+V+GL+ GADDYI KPF EL+ARIR +++R + Sbjct: 61 QVLRALRSNQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQQ 120 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 QS + +L ++L + V I LT KE+ ++EL + +++ + + Sbjct: 121 PTTQSTTRLSIANLHLDLLRRKVFRDKEPIALTAKEFALLELFMRKTGEVMSRSQIASSV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 +D + + +IDV + +LR K+ K I T G GYVL E E C Sbjct: 181 WDMNFDSDTNVIDVAVRRLRNKVDKPFEPK-LIHTERGMGYVLEER---EPC 228 >gi|108763277|ref|YP_632939.1| DNA-binding response regulator PhoP1 [Myxococcus xanthus DK 1622] gi|45720780|emb|CAG17624.1| response regulator phoP1 [Myxococcus xanthus] gi|108467157|gb|ABF92342.1| DNA-binding response regulator phoP1 [Myxococcus xanthus DK 1622] Length = 226 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ LA ++ L++ F G G+ + + D ++LDL L D+ G E Sbjct: 3 RILIIEDEQDLAGLVDYNLRAAGFETETASTGASGLAKARAHPPDLVLLDLMLPDVAGSE 62 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR L+ V I+S D+V+GL+ GADDY+ KPF+ EL+ R++A++RR+ Sbjct: 63 VLRMLKADTELRKASVIIVSAKGQESDRVQGLELGADDYVVKPFSVRELLLRVKAVLRRA 122 Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++ +GD+S++ V V+G + LT E++++ L R + T+E+ L+ Sbjct: 123 DAEDGPSAVLASGDISLDTTRHQVRVKGEEVLLTALEFRLLRTLLERSDRVQTREVLLSD 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + E + +D I +LR+KL A + IETV G GY L Sbjct: 183 VWGIQAEIHTRTVDTHIKRLREKLGPAG---DIIETVRGVGYKL 223 >gi|150017826|ref|YP_001310080.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904291|gb|ABR35124.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 227 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 13/224 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K+++ ++ L+ E + VY T+ G DGIE+ + D +ILDL L DI G EV Sbjct: 4 ILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGEEV 63 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR KIS + +L+ S++ DK+ GL GAD+Y++KP + EL AR+ A+ RR Sbjct: 64 CKILR--KISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGC 121 Query: 122 HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 +++I D L +++D + V++ G I+LT E+ ++ +L+ + T+E + Sbjct: 122 KKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIERAF 181 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +DG D + IDV I LRKK+ YI TV GY Sbjct: 182 GMEFDGSD----RSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGY 221 >gi|52841523|ref|YP_095322.1| DNA-binding response regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628634|gb|AAU27375.1| DNA-binding response regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 225 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/200 (37%), Positives = 116/200 (58%), Gaps = 8/200 (4%) Query: 28 YVTDL---GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84 YV D GE K F+ IILDLGL + G +L+ +R STPV IL+ SI Sbjct: 25 YVVDWLKDGEAARAALKSESFELIILDLGLPKLSGLSLLQNIRHDGNSTPVIILTARESI 84 Query: 85 EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQ 144 ED+V+GL SGADDY KPF+ EL ARIRA+VRRS+G A S++ +++++ A +V V Sbjct: 85 EDRVKGLDSGADDYHIKPFDLNELSARIRALVRRSQGRADSVLQYKNITLDPAAHSVFVD 144 Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 +++ +E+ +++ L L++E + +Y ++ + ++V I LRKKL+ Sbjct: 145 DVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLN-- 202 Query: 205 AGGKNYIETVWGRGYVLREN 224 N+I T+ G GY+ +N Sbjct: 203 ---ANFIRTIRGVGYMAEKN 219 >gi|78221749|ref|YP_383496.1| two component heavy metal response transcriptional regulator [Geobacter metallireducens GS-15] gi|78193004|gb|ABB30771.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 223 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+K A ++ F+ GEDG+ L + +D +ILD+ L G+ Sbjct: 1 MRILIIEDEKKAAAYLQKGFTENGFSADTAQNGEDGLHLARTEAYDLVILDIMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV LS +++D+VRGL+ GADDY+ KPF EL+AR R I+RR Sbjct: 61 SVLEELRRGGSEVPVIYLSARDAVQDRVRGLELGADDYLVKPFAFSELLARARNILRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L G + LT KE+ ++ LL RK L++ + + ++ Sbjct: 121 ARQPERLRVDDLEMDLVGHKAWRGGTPLDLTTKEFLLLSLLLRRKGEVLSRALIADQVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+DV I +LR+K+ + + I TV G GYVL Sbjct: 181 INFDSDTNIVDVAIRRLRRKVDDPF-ERKLISTVRGAGYVL 220 >gi|329903638|ref|ZP_08273573.1| Response regulator receiver:Transcriptional regulatory protein [Oxalobacteraceae bacterium IMCC9480] gi|327548260|gb|EGF32956.1| Response regulator receiver:Transcriptional regulatory protein [Oxalobacteraceae bacterium IMCC9480] Length = 221 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +I+ LK ++ G+ + +D ++LDLGL G Sbjct: 1 MRVLLVEDDIMIGEAIQGALKDASYAADWVKNGQTALTTLACQRYDLVLLDLGLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL ++R P+ I++ ++D+VRGL GADDY+ KPF EL+AR+RA++RR Sbjct: 61 EVLTSIRAIGNPVPLLIITARDGLDDRVRGLDGGADDYLLKPFEIAELLARMRAVLRRKG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A ++ G +S++ + V G + L+ +E+ ++ L R L++ + LY Sbjct: 121 GSAAPVLGNGIVSLDPATRGATVNDGESVQLSNREFGLLHALLTRPGAILSRRELEDRLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E E ++ I LR+KL G + I+ V G G+++ +N Sbjct: 181 GWGEEVESNAVEFLIHALRRKL-----GSDVIKNVRGVGWMVSKN 220 >gi|115372285|ref|ZP_01459595.1| two-component response regulator, probably involved in phosphate sensing [Stigmatella aurantiaca DW4/3-1] gi|115370750|gb|EAU69675.1| two-component response regulator, probably involved in phosphate sensing [Stigmatella aurantiaca DW4/3-1] Length = 337 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD L I L F G + + + IILDL L G + Sbjct: 117 RILLIEDDPQLGAQIADFLGRAGFEPVWWKEGR-ALHPGEAEAYGLIILDLMLPGTYGMD 175 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR PV +LS + DKVR L+ GADDY++KPF EELV R+RA +RR Sbjct: 176 ILRGLREGS-EVPVLVLSARNDTSDKVRALRLGADDYMTKPFWPEELVERVRARLRRPVM 234 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q + G L V+L A+ V V G + LT E+ ++ L+ R +T++ ++++ D Sbjct: 235 QRQEQVELGALRVDLQAREVLVHGKPVELTRVEFNLLAALARRPGAAVTRQWLVDNVLDP 294 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVW 215 E + +DV + +LR+KL G +IETVW Sbjct: 295 EREGTERTLDVHVSRLRRKL----GPGKHIETVW 324 >gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W] gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II] Length = 238 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++V GE+ ++ + D I+LDL L I G E Sbjct: 5 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + TP+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR+ Sbjct: 65 VARQIR-KEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 123 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + GDL+++ DA TV +G I LT +E++++ L+ +T+E Sbjct: 124 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 184 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 233 >gi|16331756|ref|NP_442484.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1001717|dbj|BAA10554.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 262 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 12/229 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54 RIL++ED+ ++ +I L L+ E + VY D G D + L + + D IILD+ L Sbjct: 32 RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 + G +V R+LR +TP+ I+S S +KV GL+ GADDYI+KPF+ +ELVAR RA Sbjct: 92 PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151 Query: 115 IVRRSRGHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 ++RR +G A + I DL + V ++G + L KE++++EL + Sbjct: 152 MIRR-QGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWS 210 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E + H++ + K +DV I LR+KL Y+ TV G GY Sbjct: 211 REQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGY 259 >gi|307244376|ref|ZP_07526489.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492277|gb|EFM64317.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 224 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 128/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K + IE L S++F+ GE+G+ L +D +ILDL L ++ G Sbjct: 1 MKILIVEDNKTIQKDIEKEL-SKHFDTETCGDGEEGLYLISQGIYDLVILDLMLPNMGGI 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E+L R I TP+ IL+ +++DKV GA+DY++KPF +ELVAR+ AI+R + Sbjct: 60 EILNQARKDGIDTPILILTAKEALDDKVEAFTLGANDYLTKPFYMDELVARVYAILRTNG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + DL ++ + +V + I L K+++++E L K + L KE + ++ Sbjct: 120 KIKDKKYLEFKDLRIDSEKNSVYINDEEIELQNKQFKLLEYFVLNKGSILLKEQIYDRIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++I++V++ LRKKLS K YI+T GY+L Sbjct: 180 GIDSDATIEIVEVYVSNLRKKLSKYDYDK-YIKTKRKVGYIL 220 >gi|300694602|ref|YP_003750575.1| two-component transcriptional regulatory protein qseb [Ralstonia solanacearum PSI07] gi|299076639|emb|CBJ35977.1| Two-component transcriptional regulatory protein qseB [Ralstonia solanacearum PSI07] Length = 246 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 19/244 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE------------FDA 47 MR+LL+EDD + ++ L+ + F + +V D GE ++ FD Sbjct: 1 MRVLLVEDDDMIGDAVRKGLRQDGFAIDWVRD-GEAAVQAISSPGAAAAASESGASMFDL 59 Query: 48 IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107 ++LDLGL G +V+ +R I+ P+ IL+ ++ D+V GL +GADDY+ KPF+ +E Sbjct: 60 MLLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQE 119 Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 L AR+ A++RR G A L+ G++ +N + V G + L+G+E+ ++ L R Sbjct: 120 LAARMHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGMPVKLSGREFAVLHALLSRPGK 179 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++LY +E ++V+I LRKKL G ++I+ + G GYV+ A Sbjct: 180 VWSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREAPT 234 Query: 228 ETCE 231 E Sbjct: 235 PPAE 238 >gi|254448321|ref|ZP_05061783.1| response regulator receiver domain protein [gamma proteobacterium HTCC5015] gi|198262188|gb|EDY86471.1| response regulator receiver domain protein [gamma proteobacterium HTCC5015] Length = 226 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 123/218 (56%), Gaps = 2/218 (0%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 ++ED+ ++ L F V + G DG L FD ++LD+ L D+ G+ +++ Sbjct: 1 MVEDEIKTGDYLQQGLTESGFLVTLVRNGLDGHHLAMTETFDLLVLDVMLPDVDGWRIVQ 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 +LR A TPV L+ S++D+V+GL+ GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 SLREAGRQTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRSTVPVM 120 Query: 125 S-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 + I DL+++L G +I+L+ KE+ ++ELL RK LT+ + + ++D Sbjct: 121 TDQIRVADLTLDLPRHRAMRAGRKINLSHKEFCLLELLVRRKGEVLTRSLIASQVWDMNF 180 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +IDV I +LR K+ + K I TV G GY L Sbjct: 181 DSDTNVIDVAIRRLRAKIDDDYEPK-LIHTVRGMGYKL 217 >gi|182420098|ref|ZP_02951332.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237669479|ref|ZP_04529459.1| two component transcriptional regulator, winged helix family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376135|gb|EDT73722.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237654923|gb|EEP52483.1| two component transcriptional regulator, winged helix family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 227 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 134/229 (58%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED+ ++ +IE + E F + G D ++ + Y +D +ILDL L ++ G Sbjct: 2 VKILVVEDNIEISKNIEEYFQKE-FEITAVYNGADALDNLQIYNYDVVILDLMLPEVGGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ + ++T V IL+ + DK++ GA+DY++KPF EEL ARI AI+ +S Sbjct: 61 TVLKYISDKCLNTGVIILTAKEELGDKLKAFNLGANDYLTKPFFMEELKARINAIL-KSM 119 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++ ++ DL +++ K + ++ + I L K Y+++E L L K L KE +++ Sbjct: 120 GKVKTANILEFKDLKIDMKTKKIFIEDNEIELNEKLYKLLEYLVLNKGVLLFKEQIFDNI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + +II+V+I +LRK+L++ GK Y+ T G GY+L E+A D Sbjct: 180 CGYNSDAATEIIEVYISRLRKQLNSFGYGK-YLVTKRGMGYILDESADD 227 >gi|307131191|ref|YP_003883207.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Dickeya dadantii 3937] gi|306528720|gb|ADM98650.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Dickeya dadantii 3937] Length = 222 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L H + + L V ++ + + D I+DLGL G Sbjct: 1 MRILVVEDNVLLRHHLNVQLNEMGHQVDAAADAKEADYFLQEHAPDIAIVDLGLPVEDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R R ++ P+ +L+ S ++KV L++GADDY++KPF+ EE+VAR++A++RR+ Sbjct: 61 SLIRRWRAHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I V+L + + V G + LT EY +IE L ++KE + LY Sbjct: 121 GLASQIISLPPFEVDLSRRELLVHGDPVKLTAFEYTIIETLIRNNGKVVSKESLMLQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E IDV + +LRKKL A + I TV G+GY Sbjct: 181 DAELRESHTIDVLMGRLRKKL-QTANSHDVITTVRGQGY 218 >gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300075141|gb|ADJ64540.1| cobalt/zinc/cadmium resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD + L+ + V + G DG+ + ++D ++LD+ L + G+ Sbjct: 1 MAILVIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ ALR +K PV L+ ++D++RGLQ GADDY+ KPF+ ELV RIR ++RR Sbjct: 61 QVMSALR-SKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++ V QG I LT KE+ ++ LL R+ L++ + + ++D Sbjct: 120 TREAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++DV I +LR K+ +A K I TV GY+ E Sbjct: 180 MNFDSDTNVVDVAIKRLRAKI-DAPFDKKLIHTVRSVGYMFSE 221 >gi|228945616|ref|ZP_04107966.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814134|gb|EEM60405.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 232 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKANTITSGPFLLNIVEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 227 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 132/222 (59%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+++L+ + +L+ E ++V + + G +E+ + + D I+LDL L +PG E Sbjct: 3 KILLVEDEESLSDPLSYLLEREGYDVSIAEDGLKAVEMFELHGADIILLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R AK P+ +L+ + DKV GL+ GADDY++KP++ EL+ARIRA++RR + Sbjct: 63 VCRAIR-AKSMVPIIMLTAKDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRGQA 121 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +++ G + V++D V V+G + L KE++++E+L +T+E ++ Sbjct: 122 QGSEGSSNVLEAGGVRVDVDRYVVTVRGEDMQLPLKEFELLEMLVRNAGRVMTREQLIDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ + T+ G GY Sbjct: 182 VWGSDYVGDTKTLDVHVKRLRTKIEENPSKPELLVTLRGLGY 223 >gi|296123001|ref|YP_003630779.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296015341|gb|ADG68580.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 225 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+IEDD A+ S++ + G G E + DAI+LDL L G+ Sbjct: 1 MNVLVIEDDPAIGRSLQQGFSEAGHHCVWQQNGISGYETALSRQADAIVLDLLLPGESGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR A + P+ +L+ + SI+D+V+GL+ GADDY+ KPF+ EL+AR+ A+ RR+ Sbjct: 61 DVLQKLRAAGVQAPIILLTALGSIDDRVKGLKLGADDYLVKPFDFAELMARLEAVQRRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ L+++L + V I LT E+ ++ELL +T++M H+ Sbjct: 121 NKPSMILQAAGLTLDLTTRRVTSNDTEKEIDLTPIEFSLLELLMRYAGQVVTRKMLCEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+V + +LR KL ++ I+TV GRGY L Sbjct: 181 WGFNWDGTTNVIEVHVNRLRGKLDKDR-DQSIIKTVRGRGYAL 222 >gi|225874419|ref|YP_002755878.1| transcriptional activator protein copR [Acidobacterium capsulatum ATCC 51196] gi|225791448|gb|ACO31538.1| transcriptional activator protein copR [Acidobacterium capsulatum ATCC 51196] Length = 225 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD A A +E L +N+ + L IILDLGL D G Sbjct: 1 MKLLVVEDDVANAQFLERALAENGYNIDLAHNAAAAERLALEGGHAVIILDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++ L+ + PV ILS +++D+VRGL+ G DDY++KP+ EL+AR+R ++RR Sbjct: 61 SLITRLKAGGVKAPVLILSARRAVDDRVRGLEQGGDDYLTKPYALPELLARVRNLLRRNS 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +++ DL +NL + G + LT +E+ ++E L +T+ M L + Sbjct: 121 SAPDTSTVLRVLDLEMNLLRREATRAGELLQLTTQEFALLEFLCRHAGRVVTRSMILQQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + R +P+ ++DV I +LR K+ I T+ G GYVLR+ Sbjct: 181 WGMRIQPDTNVVDVHIYRLRSKVER-PDLPQLIRTIRGVGYVLRD 224 >gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15] gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15] Length = 244 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ ++ L E ++VY GE+ +E E D I+LDL L + G E Sbjct: 13 KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 73 VAREVR-KTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 131 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + + GDL+++ +A V +G I LT +E++++ L+ +T+E Sbjct: 132 ATREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 191 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + NY+ T G GY LR Sbjct: 192 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLR 239 >gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii HTCC2633] gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ AL+ + LK E F V + GE+ + L + + D ++LD L I G EV Sbjct: 5 VLVVEDEDALSELLSYNLKKEGFRVSLAADGEEAMMLVEERQPDVVVLDWMLPKISGIEV 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + P+ +L+ D++RGL +GADDYI KPF +EL AR+RA++RR R Sbjct: 65 CRRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVLRRIR 124 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+ + GD++++ A V IHL E+++++ L ++E L+ ++ Sbjct: 125 PGLAEDSVTVGDITIDRVAHRVVRSDLEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK LS A G + I TV GY L Sbjct: 185 GSDVYVEARTVDVHIGRLRKALS-AGGEHDPIRTVRSAGYAL 225 >gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 241 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 15/233 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ + L+ E + V G +G E+ + +D IILDL L + G + Sbjct: 3 KVLIVDDEQSILTLLAFNLEKEGYQVDTALDGLEGYEMAVAHPYDFIILDLMLPSMGGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + LR KI P+ +L+ +K+ GL+ GADDY++KPF+ E++AR++AI+RR Sbjct: 63 ICKKLRQEKIEAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMSS 122 Query: 119 ------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166 S LI GD+ ++ V V+G +I +T KE++++ + R N Sbjct: 123 KSKAEEALKESNSTAEQDELIKVGDIQIDPSQYEVIVRGKKIDVTPKEFELLMYMIKRIN 182 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L++E L+ +++ E +I+DV I LR+K+ YI TV G GY Sbjct: 183 RILSREQLLDAIWNFDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGY 235 >gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 226 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD+ + + I + L++E F G+ L + E D IILD+ + + G + Sbjct: 4 RILIIDDDEQIRNLIAIYLENEGFEALKVSNAVCGLALLEEQEVDLIILDIMMPQMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R K + P+ +LS S DK+ GL +GADDY++KPFN EL+AR+++ +RR + Sbjct: 64 AAFKIREEK-NMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +I GDL +N + V V+G I LT KE+ ++ELL K T ++ Sbjct: 123 YNERAERDIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLVRHKGTVMSMGKIYEA 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R+K+ + YI+T+WG GY Sbjct: 183 VWQEDAFKSDNTVMVHITKIREKIEDNPKKPIYIKTIWGVGY 224 >gi|194291255|ref|YP_002007162.1| response regulator [Cupriavidus taiwanensis LMG 19424] gi|193225090|emb|CAQ71101.1| putative response regulator [Cupriavidus taiwanensis LMG 19424] Length = 224 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 124/227 (54%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+ED+ LA + L+ F + +V D G + E+DA++LDL L G Sbjct: 1 MRILLVEDEVELARWVARALEQGGFVIEHVAD-GLQAEARLQAEEYDAVLLDLRLPGKDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+++R TPV IL+ +++++VRGL GADDY+ KPF EL AR+ A++RRS Sbjct: 60 LAVLKSMRGRDDRTPVLILTAQDTLDERVRGLNLGADDYLPKPFAIAELEARLLALIRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 RG A + G L + + ++ + G + LT +E ++ L R LTK L+ ++ Sbjct: 120 RGRAHPRLQCGTLVFDGETRSFTLGGAPLALTPRESTLLGALLARSGQPLTKAQLLDKVF 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + I+V + +LRKKL AG I T+ G GY+L AK Sbjct: 180 SLDADVSPDAIEVLVYRLRKKL---AGHGVTIVTLRGFGYLLEPEAK 223 >gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 245 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A+ + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDIDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S+ A SL + G LS++ + V G I LT +E+ ++ + ++ Sbjct: 126 LAKDSKIEAGSLRIAG-LSIDPLTREAAVDGKPIELTPREFDLLYYFAQHPGKVFSRMDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 231 >gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii] Length = 238 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 8/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A ++L L+ E + V GE G+ + +DA++LDL L I G E Sbjct: 4 RILIVEDDVHIADLLQLHLRDEGYEVTHAAEGETGLRQLEAGRWDALVLDLMLPGIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + R TP+ I S SS ++ GL+ GADDY++KPF+ ELVARI+A++RR+ Sbjct: 64 ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALLRRTDA 123 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R A L V+G LS++ + V G + LT +E+ ++ + ++ Sbjct: 124 LERNARLDAGRLEVSG-LSIDPVTRDATVDGQPLDLTPREFDLLYFFARHPGKVFSRMDL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 LN ++ + E ++ I +LR K+ + I TVWGRGY A E Sbjct: 183 LNQVWGYQHEGYEHTVNTHINRLRTKIEADPSEPSRILTVWGRGYKFAAPASGEPT 238 >gi|126702213|gb|ABO26810.1| PmrA [Tatlockia micdadei] Length = 222 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 118/200 (59%), Gaps = 8/200 (4%) Query: 28 YVTDLGEDG---IELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84 YV D +DG K F+ IILDLGL + G L+ +R +TPV IL+ ++ Sbjct: 25 YVVDWLKDGDAARAAVKSESFELIILDLGLPKLSGLSFLQTIRHEGNTTPVIILTARETV 84 Query: 85 EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQ 144 ED+++GL SGADDY++KPF+ EL AR+RA+VRRS+G A S++ +++++ A +V V Sbjct: 85 EDRIKGLDSGADDYMTKPFDLNELSARVRALVRRSQGRADSVLQYRNVTLDPAAHSVYVD 144 Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 I++ +E+ +++ L L++E + +Y ++ + ++V I LRKKL+ Sbjct: 145 DVMINVPRREFALLQKLLENSGQVLSREQLMQSIYGWDEDVDSNALEVHIHNLRKKLN-- 202 Query: 205 AGGKNYIETVWGRGYVLREN 224 N+I T+ G GY+ +N Sbjct: 203 ---ANFIRTIRGVGYMAEKN 219 >gi|229076178|ref|ZP_04209146.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18] gi|229099149|ref|ZP_04230083.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29] gi|229105297|ref|ZP_04235946.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28] gi|229118159|ref|ZP_04247518.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3] gi|228665382|gb|EEL20865.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3] gi|228678223|gb|EEL32451.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28] gi|228684377|gb|EEL38321.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29] gi|228707041|gb|EEL59246.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18] Length = 229 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 225 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 115/218 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EAAQSPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 115/218 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|221068535|ref|ZP_03544640.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220713558|gb|EED68926.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 223 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED+ L + L V GE L + FDA +LDLGL G Sbjct: 1 MRILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGLPVRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRA R S PV IL+ ++ +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 SVLRAWRAQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA +L G ++++ V V+G + LT E++++ LL R +++ H+Y Sbjct: 121 PHASALWQCGAITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + I+VF+ +LRKKL + IETV G GY L + E Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLPAGS-----IETVRGLGYRLVAPSNQE 223 >gi|114706873|ref|ZP_01439773.1| two-component transcriptional regulator, winged helix family protein [Fulvimarina pelagi HTCC2506] gi|114537821|gb|EAU40945.1| two-component transcriptional regulator, winged helix family protein [Fulvimarina pelagi HTCC2506] Length = 225 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+ A + LK GE G+ + + ++D +I+D L G Sbjct: 1 MRILIIEDDRETASYLTKALKEAGHVADHAGDGETGLNMAEGRDYDLLIVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119 V+ LR + TP ILS + ++D+V GL++G DDY++KP+ EL+AR + RR+ Sbjct: 61 SVIADLRKSGTHTPALILSALGQVDDRVEGLKAGGDDYLTKPYAMSELLARAEVLGRRRA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ GDL ++ + V G I L +E++++E L +T+ M L +++ Sbjct: 121 TGEVETSYQVGDLELDRLSHEVRRAGKPIILQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ G + TV G GY++R Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEREFDGP-LLHTVRGSGYIMR 222 >gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis raciborskii T3] Length = 272 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54 R+L++ED++ + + + L+ E + V G +EL + E FD ++LDL L Sbjct: 42 RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 101 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR S P+ ILS S D+V GL+ GADDY++KPF+ E+VAR RA Sbjct: 102 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARCRA 161 Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR R LI T D+S+N V V+G + L+ KE++++EL ++ Sbjct: 162 LLRRQRFSNLPLIPTLKYKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 221 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 222 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGY 269 >gi|146311515|ref|YP_001176589.1| two component transcriptional regulator [Enterobacter sp. 638] gi|145318391|gb|ABP60538.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 225 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD L + + + L + +V ED + + ++LDLGL D G Sbjct: 1 MKILLIEDDLDLGNGVRIALADQGLDVIWVRRKEDALHQLDACVPELVLLDLGLPDGDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR PV IL+ +++D++ GL +GADDY+ KPF EL+AR+RA+ RRS Sbjct: 61 SLMAYLRQQMKGIPVIILTARGTLQDRLCGLDAGADDYLVKPFVLAELLARVRALARRSY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +I LS+++ + V V I LT EY ++E L LR + +T+ FL Sbjct: 121 GFENEMIEIRGLSLHVPTRRVTVSTRNIELTASEYALLETLLLRTDRVITRR-FLEERIF 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E +DV + LR+K+ G Y+ TV G G+V+ Sbjct: 180 GAKENMSNSLDVHMGNLRRKI-----GDGYVRTVRGVGFVI 215 >gi|187478540|ref|YP_786564.1| heavy metal sensing two-component sytem response regulator [Bordetella avium 197N] gi|115423126|emb|CAJ49657.1| heavy metal sensing two-component sytem,response regulator [Bordetella avium 197N] Length = 223 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED+ A + L + V V G + FD ++LD+ L + G+ Sbjct: 1 VRILIVEDEPKTADYLAGGLAESGYAVTVARDGRSAQHCFESALFDLVLLDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + STPV LS S++D+V+GL+ G DDY+ KPF+ EL+AR+R+++RR Sbjct: 61 EVLRVIR-RRASTPVLFLSARDSVQDRVKGLELGGDDYLIKPFSYAELLARVRSLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q ++ GDL + + V G I LT KE+ ++ LL R+ LT+ M +H++ Sbjct: 120 VQCQDVLRLGDLEMVVGRFEVRRAGRLIRLTAKEFVLLRLLLERQGEVLTRTMIASHVWL 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV I +LR K+ + I TV G GY L Sbjct: 180 MNFDCDTNVVDVAIRRLRMKIDEPYPDR-LIHTVRGMGYRL 219 >gi|255523659|ref|ZP_05390626.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512714|gb|EET88987.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 228 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 12/226 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIP 58 ++L+IEDD +A L N Y D+ +DGI K +D +++DL L Sbjct: 3 QVLIIEDDNNIA---ALERDYLQLNGYKVDIEQDGISGLKRALLGVYDVVVVDLMLPGKD 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVR 117 G+E+++A+R K P+ I+S + DK+RGL GADDY++KPF+ ELVARIR+ I+R Sbjct: 60 GYEIVKAIR-DKFEIPIIIVSAKNEDIDKIRGLGFGADDYLTKPFSPAELVARIRSHIMR 118 Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R + +I + + D+ V V G I LT KEY+++ L+ N TK+ Sbjct: 119 YERLSGKKVTLEIISHKAMEIQTDSHKVFVNGKEIFLTTKEYELLVFLASNPNIVFTKDQ 178 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + + V I KLRKK+ +G YIET+WG GY Sbjct: 179 IFSSIWGEDYCGDTATVAVHIQKLRKKIEKDSGNPEYIETIWGTGY 224 >gi|24373664|ref|NP_717707.1| DNA-binding response regulator YgiX, putative [Shewanella oneidensis MR-1] gi|24348011|gb|AAN55151.1|AE015651_10 DNA-binding response regulator YgiX, putative [Shewanella oneidensis MR-1] Length = 219 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI+L+ED++ LA I L L V + K F AI+LDLGL D G Sbjct: 1 MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYHQALVGIKNETFSAIVLDLGLPDGNGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+A R +S P +L+ + + K+ L GADDY+ KPF+ EL ARIRAIVRR Sbjct: 61 DLLKAWRSQGVSIPTIVLTANTDFDTKLECLDVGADDYLGKPFDVRELAARIRAIVRRQF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G LS++L+ + V + + L+ +E+Q++ L+ LT+ L L Sbjct: 121 GLDHNSLNIGALSIDLNTREVTFRDQNVSLSRREFQLLLELAQSAGRVLTRNQ-LEQLTY 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G DE I+V I LRKKL+N I+TV G GY L E Sbjct: 180 GWDEVGSNSIEVHIHHLRKKLAN-----ELIKTVRGIGYTLTE 217 >gi|323357818|ref|YP_004224214.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323274189|dbj|BAJ74334.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 223 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ +DD L ++ + L + ++V G I L D ++LDLG+ + G Sbjct: 1 MKVLIADDDPQLVRALRITLAAHGYDVVAAADGAAAITLAAGSHPDIVLLDLGMPHLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +V++ALR S P+ ++SG + DKV L +GADDY++KPF +EL+AR+R RRS Sbjct: 61 QVIQALR-GWTSVPIIVVSGRTGSADKVDALDAGADDYVTKPFQIDELLARLRVHARRSA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ G + V+L AK V G R+HLT E++M+E L+ + +T++ L ++ Sbjct: 120 PASGEAVVRFGSVEVDLAAKAVLRDGTRVHLTPTEWRMLEFLARNPGSLVTRQTLLKEIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++ +LRKKL ++ T G GY L Sbjct: 180 ASEQVADSGYLRLYMSQLRKKLEADPSNPVHLLTEQGMGYRL 221 >gi|291280200|ref|YP_003497035.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] gi|290754902|dbj|BAI81279.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] Length = 233 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 126/229 (55%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DD + ++L L+ ENF+V T G + + L K ++D I+LDLGL DI G Sbjct: 4 KVLIIDDDYEILEILKLFLEIENFDVVTTQSGLNALNLIKNNQYDLILLDLGLPDINGEH 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R TP+ I++ S+ +KV + G DDYI KPF K EL+ARI+AI+RRS Sbjct: 64 ICKKIREMS-ETPIIIITAKESVSNKVLCFEYGCDDYIIKPFEKMELLARIKAILRRSNK 122 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++I+T +NL+ + G +I LT KE +++ L L ++ + H Sbjct: 123 IKSSNDNNIIITPPFEINLEEGYCKKDGEKIDLTAKELEILSYLVKNAGKNLKRDQIIKH 182 Query: 178 LY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ D + +DV I +R+K+ +I+T+ G GY N+ Sbjct: 183 VWGDDSLYKWSRSLDVHIQHIRQKIELNPKKPKFIKTIPGIGYKFDINS 231 >gi|255595850|ref|XP_002536403.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] gi|223519809|gb|EEF25981.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] Length = 233 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD L ++ L + + V G++G+ + +D ++LDLGL + GF Sbjct: 10 VRILLVEDDVVLGDALVQSLVNATYAVDWFRNGKEGVLAVQSQSYDLVLLDLGLPFLNGF 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E ++ LR K + PV +L+ + ED VR GADDY+ KPF EL ARIRA +RR Sbjct: 70 EFIKRLRNGKQAVPVIVLTANDNSEDIVRAFDLGADDYLIKPFKLPELTARIRAQIRRVS 129 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H S + G+L ++ + V+G ++ L+ +E+ ++E LS + +TK+ + L + Sbjct: 130 AHFSSKVSIGELELDTKERLAFVKGEKLSLSPREFSLLETLSNKFGKLVTKDALIESLCN 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I+V++ +LRKKL + I V G GY++ + + Sbjct: 190 WDHDIGPNAIEVYVHRLRKKLGDC---DVTISNVRGLGYMMEQQS 231 >gi|163859305|ref|YP_001633603.1| response regulator protein [Bordetella petrii DSM 12804] gi|163263033|emb|CAP45336.1| response regulator protein [Bordetella petrii] Length = 225 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILLIED+ LA + L +V + +DG+ EFDA+ILDLGL + Sbjct: 1 MRILLIEDEAELARWLSRSLA--RHAGFVVEWADDGLLAERRLAVEEFDAVILDLGLPGM 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L +R TPV +L+ S+ ++V L GADD++ KPF EEL AR+ A++R Sbjct: 59 DGHTLLSKIRARDDRTPVLVLTARDSLAERVGTLHEGADDFLPKPFVLEELEARLTALIR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG + GDL ++ A+ V+G + L+ +E+ ++ +L R + K+ L+ Sbjct: 119 RSRGREHPRLALGDLILDTSAQRFTVRGQPLQLSPREHAVLRVLIQRSGEPMNKQQILDR 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++ I+V + +LRKKL++ I T+ G GY L Sbjct: 179 IQTDDSDVNLEAIEVLVHRLRKKLADTG---VQIVTLRGLGYCL 219 >gi|238798946|ref|ZP_04642410.1| Two-component system response regulator [Yersinia mollaretii ATCC 43969] gi|238717216|gb|EEQ09068.1| Two-component system response regulator [Yersinia mollaretii ATCC 43969] Length = 227 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + L E FN + G++GI+ ++ A+ILD+ L D+ G Sbjct: 1 MKILLVDDDVELGTMLREYLSGEGFNAELVLTGKEGIDRALSGDYTALILDIMLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R K P+ +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 61 DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119 Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H +I GDL++N ++ E QG LT E+ ++ELL + +TK+ Sbjct: 120 EHPDLSSTDDGVITHGDLTLNPSTRSSEWQGTSFDLTASEFNLLELLLRSPDRVVTKDEL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + +DV I +R+KL+ G IETV GY +R Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNTLNIETVRSIGYRIR 227 >gi|300723604|ref|YP_003712909.1| response regulator in two-component regulatory system with PhoQ [Xenorhabdus nematophila ATCC 19061] gi|297630126|emb|CBJ90763.1| response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 227 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L H + + L+ V + ++ K D I+DLGL G Sbjct: 1 MRILIVEDNALLRHHLTVQLRGIGHQVDAAENAKEADYYLKENHPDIAIIDLGLPGEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R +I+ P+ +L+ S ++KV L +GADDY++KPF+ EE+ ARI+A++RR+ Sbjct: 61 SMLRRWRNEQINLPILVLTARESWQEKVAVLNAGADDYVTKPFHLEEINARIQALMRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ ++L K V I LT EY +IE L ++KE + LY Sbjct: 121 GLASQIVALSPFLIDLSRKEFSVNETNIRLTAFEYTIIETLMRNNGKVVSKESLMRQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E IDV + +LRKK+ N + I TV G+GY Sbjct: 181 DAELRESHTIDVLMGRLRKKILN-QWPEEVIVTVRGQGY 218 >gi|293416465|ref|ZP_06659104.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185] gi|291431821|gb|EFF04804.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185] Length = 219 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQCEPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254] gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254] Length = 226 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 132/229 (57%), Gaps = 14/229 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++ +E+ LK E F+V+ G++G+ + K+ +D I+LD+ L + G E Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ I DKV G GADDY++KPF+ EEL+ARI+A++RR++ Sbjct: 64 VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 HA--QSLIVTGDLSVNLDAKTV--EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL++N V E + I L+ +E+++++ L L K L+++ L Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFREYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + Y G D I+D++I LR K+ K +I+TV G G++ + Sbjct: 183 VWGFDYIGND----NILDLYIKYLRDKIDRPYERK-FIQTVRGIGFIFK 226 >gi|218658798|ref|ZP_03514728.1| two-component transcriptional regulator [Rhizobium etli IE4771] Length = 100 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/100 (60%), Positives = 77/100 (77%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100 EVLR LR++K+ TP+ I G +VRGL GADDY++ Sbjct: 61 EVLRTLRLSKVKTPILISVGHGRHRRQVRGLGFGADDYMT 100 >gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 228 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + + D I+LDL L + G E Sbjct: 5 RLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRHGADLILLDLMLPGLSGTE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR A+ + PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 65 VCRTLR-ARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + + G + ++++ V V G ++ L KE++++E+ LT+ ++ + Sbjct: 124 TEEVSDATLEVGRVRMDVERHVVTVDGSQVALPLKEFELLEMFLRNAGRVLTRGQLIDRV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 184 WGSDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGY 224 >gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23] gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23] gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] Length = 237 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++V GE+ ++ + D I+LDL L I G E Sbjct: 4 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + TP+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR+ Sbjct: 64 VARQIR-KEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 122 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + GDL+++ DA TV +G I LT +E++++ L+ +T+E Sbjct: 123 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 232 >gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 128/226 (56%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RILL+ED+K ++ I++ L E + + G + +E + E+D I+LD+ + ++ G Sbjct: 4 FRILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEYDLILLDIMIPNLNGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R P+ +L+ S I DKV GL +GA+DY+SKPF EEL+ARIR R Sbjct: 64 EVCRRIRQFS-HVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARIRVYERDKA 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q+ + ++ +D KT +V G I LT EY ++++L + KN LT++ + + Sbjct: 123 LKNQTDQIKVK-NIVMDNKTHQVLRDGKEIELTKTEYNLLKMLLINKNIVLTRDKLIEEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ++DVFI LR K+ N K I T+ G GYV+++N Sbjct: 182 WGYDYSGDTNVVDVFIRYLRSKIDNERQDK-LITTIRGVGYVIKDN 226 >gi|228927067|ref|ZP_04090132.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121552|ref|ZP_04250779.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228662016|gb|EEL17629.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228832574|gb|EEM78146.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 232 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|150016899|ref|YP_001309153.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903364|gb|ABR34197.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + + I LK++ FN TD G + + L ++ D IILDLGL DI G +V Sbjct: 7 ILVVEDDRPIRNFIAASLKTQGFNYIETDKGVEAVALTMSHKPDLIILDLGLPDIDGVDV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R P+ I+S + K+ L GADDY++KPF EL+ARIR +R SR Sbjct: 67 ITRVREWS-KVPIIIVSARENERQKIEALDKGADDYLTKPFGIGELLARIRVSLRHSRAI 125 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +A+ V G L+V+ + V + IHLT EY+++ LL LT +N Sbjct: 126 TNEKENAEIFKVKG-LTVDFSKRKVTIDNEDIHLTPIEYKIMALLCKYAGKVLTHNFIIN 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E + + VF+ LR+K+ YI T G GY L ++ Sbjct: 185 EIWGAAVGNETQSLRVFMASLRRKIEKNPAEPKYIYTEVGVGYRLADD 232 >gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 132/237 (55%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ ++ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RRS Sbjct: 64 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEM 123 Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A S IV GDL + D + +++ LT KE++++ L K LT+ Sbjct: 124 AAPSSEMKNDEIEGQIVIGDLKILPDHYEAYFKENQLELTPKEFELLLYLGRHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ N YI+T+ G GY L E +E Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 240 >gi|229127407|ref|ZP_04256401.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|229144616|ref|ZP_04273018.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228638856|gb|EEK95284.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228656026|gb|EEL11870.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] Length = 232 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 6 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 66 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRRIEV 125 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESMR 232 >gi|237729610|ref|ZP_04560091.1| tricarboxylic transport regulatory protein [Citrobacter sp. 30_2] gi|226908216|gb|EEH94134.1| tricarboxylic transport regulatory protein [Citrobacter sp. 30_2] Length = 224 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L F V G L + +LD+ + + G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR + PV +L+ S++ D+V+GL GADDY++KPF EEL AR+RA++RRS Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEELDARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G+L+ + D +QG + LT +E ++ +L R+ ++++ ++ Sbjct: 121 GQVHGIQQLGELAFH-DEGYFLLQGQPLALTPREQALLTVLMYRRLRPVSRQQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + I+++I +LRKKL G I T+ G GYVL Sbjct: 180 LSDEVSPESIELYIHRLRKKLQ---GSDVRIATLRGLGYVL 217 >gi|217966593|ref|YP_002352099.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217335692|gb|ACK41485.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 220 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 127/224 (56%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ ++H +EL L E V V G D + + ++ D +ILD+ L + G Sbjct: 1 MKILVVEDDRKISHLLELELTHEGHEVKVVGDGYDALIEVEDFKPDVVILDIMLPGLSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR + +L+ + ++DKV + GADDY+ KPF+ EEL+ARI+A+ RR + Sbjct: 61 EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFKLGADDYVVKPFSIEELLARIQAVSRR-K 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I + + +D V + G + L+ E+ ++ LL +N L+KE L+ ++ Sbjct: 120 EKKEEIISKHGIELYVDQHRVFIDGKEVELSKTEFSLLYLLLKNENIVLSKEKILSSIWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D+ +++V+I LRKKL YI+T+ G GY R++ Sbjct: 180 DYDDERENLVEVYINYLRKKLGERG---KYIKTIRGVGYSFRKD 220 >gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4] Length = 238 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 129/231 (55%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ + V + GE+G EL + D I+LDL L + G E Sbjct: 4 KILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDKPDFIVLDLMLPKMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ TP+ +L+ DKV GL+ GADDY++KPF+ E+VARI+AI+RR++ Sbjct: 64 VCKNLRQQKMMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAILRRTQT 123 Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 QS + G+L V + + + LT KE++++ L+ K LT++ Sbjct: 124 LIQSAVEEQDPKDYLKVGELKVYPEHYEAFIGEELLELTPKEFELLLYLTENKGRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPIYIKTIRGLGYKLEE 234 >gi|167565733|ref|ZP_02358649.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis EO147] gi|167572829|ref|ZP_02365703.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis C6786] Length = 227 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F + G G+ + ++D IILD+ L G+ Sbjct: 1 MRILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEDYDLIILDVMLPGHDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + STPV L+ + D+V+GL+ GADDY+ KPF+ ELVAR+R+I+RR + Sbjct: 61 TVLERLRRER-STPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ DL ++L + QG + LT KE+ ++ LL R+ L + + ++D Sbjct: 120 ARESSILRVADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFNSDTNVVDAAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219 >gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 238 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 131/235 (55%), Gaps = 9/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + + L E + V V GE+ ++ K + D IILDL L + G E Sbjct: 4 KILVVDDEKPIVDIEKFNLTKEGYEVSVAYDGEEALQQVKDVDPDLIILDLMLPKVDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K TP+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAREVRKTK-DTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ S I GDL ++ +A +V +G I LT +E++++ L+ +T+E Sbjct: 123 NSSSNNEEDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ +V+ +DV + +LR+K+ ++ ++ T G GY LR D+ Sbjct: 183 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYLRNPESDQ 237 >gi|307266330|ref|ZP_07547869.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|326391193|ref|ZP_08212737.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|306918637|gb|EFN48872.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|325992762|gb|EGD51210.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 231 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + I+ L+ E + Y GE+ +++ K D IILD+ L + GF Sbjct: 4 RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR + ++ P+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VLRTLRQS-MTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++I +L +++ VE I LT +E++++ L L K ++EM L + Sbjct: 123 NGNESGNIIYVKNLKIDMSKYKVEKNNKEIELTSREFELLRFLILNKGLIFSREMLLEKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++ +DV I +LR+K+ + I T G GY Sbjct: 183 WGYEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGY 223 >gi|226309996|ref|YP_002769890.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092944|dbj|BAH41386.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 131/234 (55%), Gaps = 7/234 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAII--LDLGLTDIP 58 M++LL+ED+K++ + + LK E + V GE+ ++L + D +I LD+ L I Sbjct: 1 MKVLLLEDEKSIRDFVRINLKREGYEVIEAGTGEEALDLAD-QQTDIVIAILDVMLPGID 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GFEV LR + +L+ S DKV GL+ GADDY+SKPF+ EL+AR++A+ RR Sbjct: 60 GFEVCGQLRKKYPRLGIIMLTAKSQELDKVMGLEFGADDYVSKPFSPAELLARVKALHRR 119 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ I + LD + + I LT KE+ +I+LL+ N ++++ Sbjct: 120 LTPIPEAEDKNEINIAPFRLLLDERKLIRTEQEIDLTPKEFAIIKLLAENANKAISRDEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ ++KI+DV I ++R+K+ + ++ETVWG GY+ R++ DE Sbjct: 180 LTAVWGQFFVGDLKIVDVNIRRIRQKIEDDPAHPAFLETVWGYGYLWRKDVPDE 233 >gi|167633009|ref|ZP_02391335.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|229601325|ref|YP_002866373.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|167531821|gb|EDR94486.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|229265733|gb|ACQ47370.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 230 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 5 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 65 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 124 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 125 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 185 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 230 >gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 787 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ LA + L +++ V + + G+ G E + +D I+ D+ L + G Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR STP+ +++ D++RGL +GADDY+ KP N EL AR+RA++RR Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ V + LT KEY ++E+L ++ + HL+ Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D P+ + + I LR KL G ++IE V+G GY L+ Sbjct: 181 FDDPPQEETVKSHIKGLRHKL-KVVGAVDWIENVYGLGYRLK 221 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 14/128 (10%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF------DAIILDLGL 54 + +L+++DD + ++ ML E + + +T L + +F+E D +ILD+ + Sbjct: 500 VNVLVVDDDPLILAALGPML--EPWGMRITGLDDP----LRFWEVLQSTAPDLLILDVEM 553 Query: 55 TDIPGFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 I G E+ +A+R P+ L+ +E + +G DDY+ KP EL+ARI Sbjct: 554 PHISGIELCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARI 613 Query: 113 RAIVRRSR 120 + RSR Sbjct: 614 THRLERSR 621 >gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 267 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 115/218 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V G ++ D ++LDLGL + G E Sbjct: 45 RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 104 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 105 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 164 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 165 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 224 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 225 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 262 >gi|295836940|ref|ZP_06823873.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826289|gb|EFG64773.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 229 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + D ++LDL L G E Sbjct: 8 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFHDTKPDLVLLDLMLPGRDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ PV +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 68 VCRLIR-AESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ + I LT E+ ++ L+ + T+E+ L ++ Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKRESQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGY 224 >gi|295105315|emb|CBL02859.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 236 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 6/231 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + I LK+ + GE I + + D ++LDLGL DI G EV Sbjct: 6 ILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAIMMTTSHNPDIMLLDLGLPDIDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R++R + P+ +LS S DK+ L +GADDY++KPF+ +EL+AR+R RR Sbjct: 66 IRSVRTWS-NLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLNLL 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G + V G L ++ A V + + +HLT EY+++ +L+ LT Sbjct: 125 ASDGINSPVFVNGPLKIDFSAGCVWLSENELHLTPIEYKLLCVLAHNVGKVLTHTSLTQK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ E ++ + V++ LRKKL + I+T G GY + DE Sbjct: 185 VWGSTQENDIASLRVYMASLRKKLERCPDAPHLIQTHVGVGYRMLRAENDE 235 >gi|266623677|ref|ZP_06116612.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM 13479] gi|288864523|gb|EFC96821.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM 13479] Length = 223 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+K + I+L L ++ G + +E+ + FD I+LD+ L I GF Sbjct: 2 IKILIVDDEKPICDLIDLNLSEAGYHCRAVQDGAEAVEIIEHERFDLILLDIMLPGIDGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R +I PV ++ + D+V+GL+ GADDY+ KPF+ ELVAR+ A++RR Sbjct: 62 DIMEYIRPMEI--PVIFITAKYEVRDRVKGLKLGADDYLVKPFDVVELVARVEAVLRRY- 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GD+ V+++A+TV+ G + LT KE+ ++ L +N L +E +++ Sbjct: 119 NKTERRLSAGDVVVDVEARTVKKAGRPVELTNKEFLLLVLFLRNRNVALFRETLYEKVWE 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G + + +D+ + +LRKKL+ G + V+ GY L Sbjct: 179 GEYSGDSRTLDLHVQRLRKKLNWENGEYPRLVAVYKVGYRL 219 >gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12] gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium D344SRF] gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12] gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium D344SRF] gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 244 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ ++ L E ++VY GE+ +E E D I+LDL L + G E Sbjct: 13 KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 73 VAREVR-KTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 131 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A+ + + GDL+++ +A V +G I LT +E++++ L+ +T+E Sbjct: 132 AAKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 191 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + NY+ T G GY LR Sbjct: 192 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLR 239 >gi|256826808|ref|YP_003150767.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582951|gb|ACU94085.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 226 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 126/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD LA ++ +LK+ ++ V V G+ G+ + +D +LD+ L GF Sbjct: 1 MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR + P+ +L+ I DKV GL +GADDY++KPF EL+ARIR++ RR+ Sbjct: 61 SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + D++++LDA +E +G RI L+ KE+ ++ +L + + +K+ ++ ++ Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ ++ LRKKL+ G I T+ G+GY L A Sbjct: 181 YDSTAADNNVEAYVSFLRKKLA-FIGATTCIVTLRGQGYRLGTQA 224 >gi|167758971|ref|ZP_02431098.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704] gi|167663378|gb|EDS07508.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704] Length = 236 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + I L+S+N+ G + D I++DLGL D+ G +V Sbjct: 9 ILVVEDDAPVRNLITTTLESQNYKYMAAANGNQAVMSAASGSPDIILMDLGLPDMDGVDV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ +R ++ P+ ++S S DKV L +GADDY++KPF+ EEL+AR+R+ +RR + Sbjct: 69 IKKIRTWSVA-PIIVISARSDDHDKVDALDAGADDYLTKPFSVEELLARLRSTLRRVQYL 127 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q S+ G+L+++ A TV + H IHL EY ++ LL+ LT + L+ Sbjct: 128 MQKDEGNASIFHNGELTIDYGAGTVSIGDHEIHLMPLEYSLLCLLAKNVGKVLTYQFILD 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + + V++ LRKK+ YI+T G GY Sbjct: 188 KVWVNAIESDRSSLRVYMASLRKKIEKDKNHPQYIQTHIGVGY 230 >gi|220918203|ref|YP_002493507.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219956057|gb|ACL66441.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 234 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 4/221 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 LL+EDD LA L+ V G G++ FD ++LDL L G EV Sbjct: 10 LLVEDDLRLAAFTREYLEGHGVAVVHATDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R LR ++ PV +L+ D+V GL+ GADDY++KPF+ EL+ARIRA+VRR+ G A Sbjct: 70 RELR-SRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGRA 128 Query: 124 ---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G L V+ A+ V + G + LTG E+ ++ L+ R L +E + Sbjct: 129 GPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAGG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E + +DV + +LR+KL + I+TV G GY+L Sbjct: 189 SAEEAFDRSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229 >gi|118477427|ref|YP_894578.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|229090987|ref|ZP_04222211.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] gi|229184209|ref|ZP_04311418.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|118416652|gb|ABK85071.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|228599324|gb|EEK56935.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|228692388|gb|EEL46123.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] Length = 232 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 7 ILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKAHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] Length = 230 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED+ +A + L L+ E + V G G+EL + + D ++LD+ L + G+ Sbjct: 4 KVLIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELFRSFHPDLVLLDIMLPVMDGWS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL+ +R + TPV +L+ EDKV GL+ GADDYI KPF +E++ARI A++RR Sbjct: 64 VLKKIRESD-KTPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLRRFGA 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + + L +NLD+ + V G R+ KE +++ L+ N T+ L+ Sbjct: 123 EEEGSGEKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLAASPNRVFTRNQLLDE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV I +LR+KL + + ++TVWG GY Sbjct: 183 VWGFDYFGDSRTVDVHIKRLREKLEGVS-EQWSLKTVWGVGY 223 >gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 231 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RR Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSSKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227 >gi|326381575|ref|ZP_08203269.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199822|gb|EGD57002.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] Length = 238 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R +++ED+ ALA + L+ + F V VT G D + L + + D ++LDLGL + G E Sbjct: 7 RAMVVEDEAALASLVASYLERDGFEVTVTGDGADAVALARKVDPDVVVLDLGLPGLDGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR + V +L+ + D + GL GADDYI+KPF+ EL ARI+A +RR R Sbjct: 67 VCRRLRTFSDAY-VVMLTARADEVDTLVGLSVGADDYITKPFSPRELSARIQARMRRPRT 125 Query: 121 ---GHAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 G + V GDLS+++ + V V G +HLT E+ ++ LS T ++ Sbjct: 126 GFTGEQTPVTRAPDRVFGDLSIDVLGREVWVSGEPVHLTRTEFDLLAALSSAPGTVFSRA 185 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + ++DV I +R+KL + A Y+ TV G GY Sbjct: 186 RLIDTVWGPEWIGDDHLVDVHIGHVRRKLGDDAAQGRYVRTVRGVGY 232 >gi|238063518|ref|ZP_04608227.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237885329|gb|EEP74157.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 222 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I L+ V V G+ G E+ +D ++LD L + G Sbjct: 1 MRVLVVEDERNLADAIARGLRKRGMAVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGVHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ L + T V +L+ ++ D+V GLQ GADDY+ KPF +ELVAR++A+ RR+ Sbjct: 61 QICAELAASGTLTRVLMLTASGTVADRVEGLQLGADDYLPKPFAFDELVARVQALGRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ DL ++ + V G + LT KE+ ++ L + ++ E L ++D Sbjct: 121 PAAPPVLAVADLVLDPARRVVTRGGTAVDLTNKEFGVLAELLKARGAVVSSEELLERVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +P I+ V + LR+KL G IETV G GY E A Sbjct: 181 ANTDPFTTIVRVTVMTLRRKL----GDPPLIETVVGAGYRTAEGAS 222 >gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 225 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 115/218 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V + G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGVDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAEGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPAPAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|167589275|ref|ZP_02381663.1| two component heavy metal response transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 234 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 131/231 (56%), Gaps = 2/231 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + ++ L E + V GEDG +++D ++LD+ L + GF Sbjct: 1 MKVLIVEDELKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ ++D+VRGL+ GADDY++KPF+ EL+ R+RA+ RR+R Sbjct: 61 GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT +E+Q++ +L+ R L+K ++D Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + +++ I +LR KL K + T+ G GYVL E E + Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVLEEREAREDAD 229 >gi|224437571|ref|ZP_03658529.1| hypothetical protein HcinC1_06380 [Helicobacter cinaedi CCUG 18818] Length = 226 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 16/225 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGE---DGIELCKFYEFDAIILDLGLTDI 57 MRIL+IEDD AL SIE ML N + Y TD+ E DG +D ++ D L D Sbjct: 1 MRILVIEDDSALCKSIEDML---NGHSYQTDIAENLKDGEYFISIRNYDLVLSDWDLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +++ ++ TPV I+S SS+E+++ + GADD++SKPFN E L+ RI+A Sbjct: 58 CGVDIISQVKEKSPRTPVVIMSSKSSVENELHAFKEGADDFVSKPFNAEVLLVRIQA--- 114 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R R S+I DL +N D + + +G I + GK ++++ L+ ++ ++KE L+ Sbjct: 115 RLRFWGSSVIEIEDLVINPDEEKITYKGQEIEVKGKPFEVLTHLARHRDQIVSKEQLLDA 174 Query: 178 LYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +EPE+ +I+V I ++R+K+ IETV RGY Sbjct: 175 IW---EEPELVTPNVIEVAINQIRQKMDKPL-NIGTIETVRRRGY 215 >gi|258511095|ref|YP_003184529.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477821|gb|ACV58140.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 233 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+K +A + L L+ F V D G + + + IILDL L DIPG EV Sbjct: 7 ILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGEEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 A+R A+ + P+ +L+ ED++RGLQ GADDY++KPFN E+VAR++AI+RR+ Sbjct: 67 CMAVR-ARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRTMLD 125 Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A L GDL ++ ++ V G LT EY+++ +LS ++E + + Sbjct: 126 HPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREELIERV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +V+ ID + LR K+ + YI+TV+G GY Sbjct: 186 FGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGY 226 >gi|223984150|ref|ZP_03634301.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM 12042] gi|223963882|gb|EEF68243.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM 12042] Length = 231 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 127/228 (55%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD +A +IE+ LKSE + ++ G + +E+ + I++D+ + + G + Sbjct: 5 KILVVDDDHEIADAIEIYLKSEGYEIFKAYNGLEALEILNQQKIHCILMDVMMPKMDGIQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +R + P+ ILS S DKV GL GADDYI+KPFN E++AR+++ +RR Sbjct: 65 AIMHIRETS-NIPIIILSAKSEDMDKVLGLNIGADDYITKPFNPLEMIARVKSQLRRYMQ 123 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++I G LS++L+AKTV ++G + +T EY+++EL N + + Sbjct: 124 LGATAETGTVIEVGGLSIDLEAKTVTLEGEPVKVTPIEYRILELFLTNLNRVFSIDEIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V I ++R+K+ YI+ VWG GY + +N Sbjct: 184 RVWNETSFQSENTVAVHIRRIREKIEIDPKNPRYIKVVWGIGYKIEKN 231 >gi|50123231|ref|YP_052398.1| DNA-binding transcriptional regulator CpxR [Pectobacterium atrosepticum SCRI1043] gi|49613757|emb|CAG77208.1| two-component response regulator [Pectobacterium atrosepticum SCRI1043] Length = 232 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 22/234 (9%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV V GE +++ D ++LD+ + G + Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQIVD-NTIDLLLLDVMMPKKNGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRKNT 167 Q GD S A T+EV G R++ LTG E+ ++ LL+ R Sbjct: 121 TDQQ--QAGDNS----APTLEVDGLRLNPGRQEASFDDIVLDLTGTEFTLLYLLAQRLGQ 174 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++E + R P + ID+ I LR+KL G + +T+ GRGY++ Sbjct: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLM 228 >gi|83950531|ref|ZP_00959264.1| two-component response regulator [Roseovarius nubinhibens ISM] gi|83838430|gb|EAP77726.1| two-component response regulator [Roseovarius nubinhibens ISM] Length = 224 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDDK + L+ E V + + G + + E+D +I+D L + G Sbjct: 2 MKILVVEDDKTTGAYVAGGLREEGHVVDLIENGREALLQASGTEYDVLIIDRMLPGLDGM 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR AK TPV L+ + ++D++ GL +G DDY+ KPF EL AR+ A+ RR R Sbjct: 62 ALVKTLRGAKNHTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPR 121 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ GDL ++L + V G I L +E+ ++E L RK T+ M L ++ Sbjct: 122 ATQEETILRAGDLEMDLMHRKVTRAGQVIDLLPREFALLEQLLRRKGRVQTRTMLLEAVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P+ +++ I +LR K+ IETV G GY Sbjct: 182 DISFDPQTNVVETHISRLRAKVDKPF-ETELIETVRGSGY 220 >gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 114/218 (52%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD +++ + L+ E + V V G ++ D ++LDLGL + G E Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 63 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 T + +++++ + + LT KE+ ++ +L +T++ + ++D Sbjct: 123 EPVPQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ I LRKKL + A YI TV G G+ Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220 >gi|228987919|ref|ZP_04148027.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229158275|ref|ZP_04286342.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342] gi|228625233|gb|EEK81993.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342] gi|228771842|gb|EEM20300.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] Length = 232 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 121/230 (52%), Gaps = 16/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD +A IE+ LK E + V GE IE+ + D ++LD+ + + G+EV Sbjct: 6 ILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKMDGYEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K + P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 66 TRQIR-TKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLAL 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT-----K 171 Q S++ G + ++ + +TV V G RI LT KE+ ++ LL+ + + Sbjct: 125 NQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENIFQ 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ N YD + + V I LRKKL I+T+WG GY Sbjct: 185 QIWTNDYYDDNNN----TVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTF 230 >gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis SK119] gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp. hominis C80] gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis SK119] gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp. hominis C80] Length = 241 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 130/237 (54%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ G++ EL ++ I+LDL L ++ G E+ Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDYACILLDLMLPEMDGIEM 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 65 SSKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTS 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 KPEQSEPHARDVIEFNHLIIDNDAHRVLADQQQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY N DE+ Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEEAAHMIQTVWGVGYKFEVNTNDESS 240 >gi|196047257|ref|ZP_03114472.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225863933|ref|YP_002749311.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|196021882|gb|EDX60574.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225788837|gb|ACO29054.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 229 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 4 ILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 124 DEKAHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|30020111|ref|NP_831742.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus ATCC 14579] gi|296502594|ref|YP_003664294.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|29895661|gb|AAP08943.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus ATCC 14579] gi|296323646|gb|ADH06574.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] Length = 229 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 3 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 63 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRRIEV 122 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESMR 229 >gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 232 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L++ F V G+ ++L + + D +ILD+ L I G E Sbjct: 5 KILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKEQPDLVILDIMLPGIDGLE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R R + + PV +L+ + DKV GL+ GADDYI+KPF+ ELVAR++A++RR+ Sbjct: 65 VCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAVLRRA 124 Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S +I G ++++++ V V+G R T KE++++ LL+ ++E L + Sbjct: 125 DKVERSDKIIKAGPITIDVERHEVFVEGERKDFTPKEFELLRLLASNPGKVFSREYLLEN 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +DV I LR+K+ + +IETV G GY E Sbjct: 185 IWGYDYLGDTRTVDVHIRHLRQKIERNSDTPQFIETVRGIGYKFNE 230 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074627|gb|ADJ64026.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 6/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+ED +A +I L V + ++ L + Y D +ILD+ L G Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRLSESY--DLLILDVMLPQQDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F +L+ LR TPV +L+ + +E++VR L GADDY+ KPF+ EL ARIR ++RRS Sbjct: 59 FSLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRS 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + +L+ +LS++ +++ + G I LT +E ++E+++ R K+ ++ L+ Sbjct: 119 GGESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLF 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 D P ++ ++ +LRKKL+ AA I T+ G GY L +A E Sbjct: 179 TVDDNPSANSVEQYVARLRKKLAAAA---FEIRTLRGLGYQLVLHAPAE 224 >gi|154245747|ref|YP_001416705.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159832|gb|ABS67048.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 232 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++EDD + + L +E F+V V ++ +E + Y A++LD+ L D G Sbjct: 1 MNILVVEDDSDIGAMLSRGLSAEGFDVTVVGRADEALEAARQYNPCAVVLDIMLPDGSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119 EV RALR A S P+ LS + D+ GL +GADDYI KPF ELVAR+RA ++ R Sbjct: 61 EVCRALREAGHSGPILFLSAKDEVRDRAEGLGAGADDYIVKPFEFAELVARLRAHLLHRL 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + IV G L ++ +TV LT +E +++ LL N + + + L+ Sbjct: 121 GDNHAGRIVAGRLVLDQSTRTVLFGEIHARLTEREAELLALLMATPNRPVPRGEIFDRLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVL 221 + + ++DV++ LR KL+ + G + TV GRG++L Sbjct: 181 ANQGGASLNVVDVYVGYLRTKLAPVSRAGGPQVSTVRGRGFML 223 >gi|30262004|ref|NP_844381.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527270|ref|YP_018619.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184844|ref|YP_028096.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319288|ref|ZP_00392247.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165870159|ref|ZP_02214815.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167638255|ref|ZP_02396532.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686370|ref|ZP_02877591.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705941|ref|ZP_02896403.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650880|ref|ZP_02933777.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566407|ref|ZP_03019325.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036950|ref|ZP_03104329.1| DNA-binding response regulator [Bacillus cereus W] gi|218903126|ref|YP_002450960.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227815205|ref|YP_002815214.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|254684569|ref|ZP_05148429.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721327|ref|ZP_05183117.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734873|ref|ZP_05192585.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741273|ref|ZP_05198961.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254750824|ref|ZP_05202863.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760064|ref|ZP_05212088.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256630|gb|AAP25867.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502418|gb|AAT31094.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178771|gb|AAT54147.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714047|gb|EDR19568.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513556|gb|EDR88925.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170128943|gb|EDS97808.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669446|gb|EDT20188.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083341|gb|EDT68402.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562542|gb|EDV16509.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990439|gb|EDX54428.1| DNA-binding response regulator [Bacillus cereus W] gi|218537031|gb|ACK89429.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227005965|gb|ACP15708.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 229 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 4 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 124 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|297560476|ref|YP_003679450.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844924|gb|ADH66944.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 229 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 124/224 (55%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ +DD + ++ + L++ +++ V G D + D ++DLG+ + G Sbjct: 1 MRILVADDDPQILRALRVTLRARGYDIVVATNGADALNAAVDQRPDLYVIDLGMPHLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ LR S P+ ++SG + DKV+ L +GADDY++KPF +E +AR+RA+ RR Sbjct: 61 EVIEGLR-GWTSAPILVVSGRTDSVDKVQALDAGADDYVTKPFAIDEFLARVRALTRRGA 119 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHR----IHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A+ L+ G+L+V+L A+TV +G + LT E++++E+L +T++ L Sbjct: 120 CGDAEPLVRLGELTVDLSARTVTREGGSGAEGVRLTPTEWRILEILMRHAGKLVTRQRLL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +++ +LRKKL ++ T G GY Sbjct: 180 ADVWGSEHVTDTGYLRLYVSQLRKKLEPDPKAPRFLITEPGMGY 223 >gi|167464606|ref|ZP_02329695.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 236 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 130/230 (56%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGL-TDIP 58 M++L++ED++A+ + + LK + V + GE+ I L K + ILD+ L T++ Sbjct: 1 MKVLILEDEEAIRGFVRINLKRKGIEVVEAETGEEAIALIEKDSDIQIAILDVMLPTEMG 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF+V LRV + +L+ S DKV GL+ GADDYISKPF+ ELVARI A+ RR Sbjct: 61 GFDVCEQLRVKYPRMGIIMLTAKSQDTDKVLGLELGADDYISKPFSPVELVARINALNRR 120 Query: 119 SRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A++ ++ G ++LD + + G I LT E+ ++ + N +++++ Sbjct: 121 LQPVAEADEKNILEAGPFIIHLDERKLTKNGKEIDLTPTEFAIVRMFLENPNKSISRDEI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++ + KI+DV I ++R+K+ YIETVWG GY+ + + Sbjct: 181 LDEVWGRHFIGDFKIVDVNIRRIRQKIEKNPSKPVYIETVWGNGYLWKRD 230 >gi|193071717|ref|ZP_03052617.1| DNA-binding response regulator PhoP [Escherichia coli E110019] gi|192954979|gb|EDV85482.1| DNA-binding response regulator PhoP [Escherichia coli E110019] Length = 223 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ ++ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLLDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S P+ +L+ S +DKV L +GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 >gi|259418488|ref|ZP_05742406.1| transcriptional activator protein CopR [Silicibacter sp. TrichCH4B] gi|259345883|gb|EEW57727.1| transcriptional activator protein CopR [Silicibacter sp. TrichCH4B] Length = 223 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD A I LK++ V D G+DG ++D ++ D L + G Sbjct: 1 MRVLVVEDDLETADYIASSLKAQGHAVDHCDNGKDGFLNALDNDYDVMVFDRMLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++++R A I TP+ LS M I D+V GL +G+DDY+ KPF+ EL AR+ A+VRR Sbjct: 61 TLIKSVRGAGIETPILFLSAMDGINDRVEGLLAGSDDYLVKPFSFHELSARLVALVRRPP 120 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ DL +NL +TV G + L +E+ ++E L + +T+ M L ++ Sbjct: 121 LKTEETVLRVADLEMNLIRRTVSRGGTEVELQPREFSLLEYLIRNADRVVTRTMLLEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P+ +++ I +LR K+ + I T+ G GY L Sbjct: 181 DFHFDPKTNVVETHISRLRNKVDKPFATE-LIHTIRGAGYSL 221 >gi|254504173|ref|ZP_05116324.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222440244|gb|EEE46923.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 220 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 121/219 (55%), Gaps = 4/219 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +L+ED +A +I + L + E+ L +D I+LDL L D G ++L Sbjct: 1 MLVEDTFDMAEAIMIRLDRSGIACDLAKTLEEARSLLDVQRYDVIVLDLNLPDGLGTDLL 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + LR+ TPV +L+ S++D+V L SGADDY+ KPF+ EL ARI+A+ RR +G Sbjct: 61 KELRLKSDRTPVLVLTAEFSVDDRVSTLNSGADDYLVKPFDHRELEARIQALYRREQGDK 120 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 + GDL+ N A+ V ++ ++LT +E+ ++EL + L+KE ++ +D Sbjct: 121 AEELAIGDLTFNATARVVRLKETPVNLTRREFSLLELFIRNRGKVLSKERLFEGIFSFQD 180 Query: 184 -EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++++ +LRKKLS G IET G GY L Sbjct: 181 TDVSMNALELYVARLRKKLS---GSSVVIETQRGLGYKL 216 >gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 237 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++V GE+ ++ + D I+LDL L I G E Sbjct: 4 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + TP+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR+ Sbjct: 64 VARQIR-KEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 122 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + GDL+++ DA TV +G I LT +E++++ L+ +T+E Sbjct: 123 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 232 >gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 233 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+I+D+ + + + + L E F+V G +G++ + D ++LD+ + D+ G+ Sbjct: 4 LRVLVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTHDVVVLDVMMPDMDGW 63 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V + +R +A + P+ +L+ ++DKV GL GADDY+ KP + EEL+ARI A++RRS Sbjct: 64 QVCKKMREIAPV--PILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLRRS 121 Query: 120 RGHAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A +++ DL++ + + V V I LT KEY +++LL+ T ++ Sbjct: 122 SHQAHAVVREQKLTFPDLTIYPERRQVLVLNENIDLTQKEYDILQLLAQHPQRTFERDAI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L+ E ++ID I +R+KL N I+TVWG GY Sbjct: 182 VERLWGNDFLGENRVIDTHIKNIREKLQFVGLTYNPIKTVWGIGY 226 >gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC 29799] gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC 29799] Length = 228 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60 ++L++ED+ + + + LK + + GE+ + +L + + +LD+ L D+ GF Sbjct: 3 KVLVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLRRNPDIKVALLDIMLPDMDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + + +L+ + DKV GL +GADDY++KPF+ EL ARI A+ RR+ Sbjct: 63 EVCRRIRASDSQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDALYRRTG 122 Query: 121 GHAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G + +G++S +N +T+E G R+ LT EY +++L + L++E L Sbjct: 123 GAEKE--SSGEISQPPFLLNTRNQTLEKNGQRVKLTPVEYSIVKLFMEKPGQALSREEIL 180 Query: 176 NHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ GRD E+KI+DV I +LR K+ + YI TVWG GY Sbjct: 181 DTVW-GRDYFGELKIVDVNIRRLRIKIEDDPQNPAYITTVWGYGY 224 >gi|90419331|ref|ZP_01227241.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336268|gb|EAS50009.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 221 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ L + +++ L F +TD D FDA++LD+ L D G Sbjct: 1 MRILIVEDDEILGNGLKVGLGMSGFTSDLTDCCRDAEAALAVGGFDAVVLDVMLPDGSGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L A+R +TPV +L+ + ++ D++RGL GADD++ KPF +E+ AR+RA++RR Sbjct: 61 DILAAMRQRGDTTPVLLLTALDALPDRIRGLDGGADDHLGKPFALDEVAARLRALIRRGT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ + + V+ A G I L+ +E+ ++ L L++ + LY Sbjct: 121 TRAEPFLEWEGVRVDPAAMVATQDGVDIRLSRREFAVLHALIQHPGAILSRSQLEDKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E ++V + KLR K G +IET+ G GY LR Sbjct: 181 FDEGVESNAVEVHVHKLRAKF-----GSRFIETLRGVGYRLR 217 >gi|159036559|ref|YP_001535812.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157915394|gb|ABV96821.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 229 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+L+++DD ALA + ++L+SE F +V D GE + + D ++LDL L + G Sbjct: 4 RVLVVDDDPALAEMLGIVLRSEGFLPSFVAD-GERALAAFRESRPDIVLLDLMLPGMSGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R++R + P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 63 DVARSIR-GESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGE 121 Query: 121 GHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A L+ G +++++ A TV G + LT E+ ++ L+ + T+E+ L Sbjct: 122 DAAPELLTIGPTGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + ++++V + +LR K+ I TV G GY Sbjct: 182 QVWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGY 224 >gi|85715803|ref|ZP_01046782.1| DNA-binding response regulator [Nitrobacter sp. Nb-311A] gi|85697456|gb|EAQ35335.1| DNA-binding response regulator [Nitrobacter sp. Nb-311A] Length = 221 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD ++ L V G DG+ E A +LD+GL ++ GF Sbjct: 1 MRLLLIEDDAMFGKALVRGLGQNGMTVDWIRDGSDGLAALTRAEHAAALLDIGLPEMSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+A+R ++ P+ I++ +ED V GL GADDY+ KPF+ L+ARIRA+VRR+ Sbjct: 61 EILKAMRSSRRMPPILIITARDHVEDIVAGLDLGADDYLIKPFDLRTLLARIRAVVRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ + D+++N + L+ +E+ ++ L T L++ +Y Sbjct: 121 ARTSALMTSKDIALNPSTYVATFRDVEATLSAREFSVLYALMEHPGTILSRSQIEMRIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E + +DV I LRKK GK+ I + G G+V+ Sbjct: 181 WGEEIQSNAVDVVIHGLRKKF-----GKDMIHNIRGAGWVV 216 >gi|229828736|ref|ZP_04454805.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM 14600] gi|229793330|gb|EEP29444.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM 14600] Length = 230 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLI+D+ L ++ L++ V GE+GI L + E D I+LD+ + D+ GFE Sbjct: 3 KILLIDDEVELLMLLKNELEARGHRVLTAYRGEEGIALAR-QEPDLILLDIMMPDMNGFE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V RA+R +I P+ LS + DK+ L G DD+ISKPF EL+ARI A +RR + Sbjct: 62 VCRAIR-DQILCPILFLSAKQAESDKIHALTLGGDDFISKPFGLRELLARIEANLRREQR 120 Query: 121 ---GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H Q + + DLS++L V + I L+ +EY+++ELL+LR ++E Sbjct: 121 SQENHHQKKRTRLYFADLSLDLLEHRVRIGDTEIPLSRREYEIVELLALRAGQVFSREHI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + + I K+RKK + + K YI TVWG GY Sbjct: 181 YERVWGCDAEGDAYTVVEHIRKIRKKFAQVSSEKEYISTVWGIGY 225 >gi|205375565|ref|ZP_03228353.1| YycF [Bacillus coahuilensis m4-4] Length = 236 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ LK E + VY GE+ I++ + + D I+LD+ L G E Sbjct: 4 KILVVDDEKPIADILQFNLKKEGYTVYCAYDGEEAIKMAEEVQPDMILLDIMLPKRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR K P+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR + Sbjct: 64 VCRELR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRHQN 122 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 L IV G L ++ DA V + I LT +E++++ L +T+E Sbjct: 123 VQIPLEDDQKGNEIVIGSLVIHPDAYVVSKREETIELTHREFELLHYLGKHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + +I T G GY LR Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYLR 231 >gi|157736695|ref|YP_001489378.1| two-component response regulator [Arcobacter butzleri RM4018] gi|157698549|gb|ABV66709.1| two-component response regulator [Arcobacter butzleri RM4018] Length = 225 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD + + ++ L+ E + V + G++G+ L +D I+LD+ L G Sbjct: 4 MKILIIEDDLKIINFLKKGLEEECYIVDFSTNGDEGLYLASINTYDLILLDIMLPVKNGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV ++LR + I TP+ +L+ SIEDK++GL GA+DY++KPF+ EL+ARIR +R + Sbjct: 64 EVCKSLRSSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRIT- 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + DL ++L KT I LT KE+ ++E L KN L++ L Sbjct: 123 TTTQTKLSIADLELDLLNKTASRSNQNIVLTAKEFSLLEYLIKNKNRVLSETTINEALSS 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D I++V+I +LR K+ K I+TV G G+ + E+ Sbjct: 183 FEDSNISNIVNVYIYRLRNKIDKNFENK-LIKTVRGIGFKISED 225 >gi|326334021|ref|ZP_08200250.1| transcriptional regulatory protein CutR [Nocardioidaceae bacterium Broad-1] gi|325948170|gb|EGD40281.1| transcriptional regulatory protein CutR [Nocardioidaceae bacterium Broad-1] Length = 238 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED L ++++ L+ E + V D ++ +D ++LD+ L D GF Sbjct: 1 MRVLIVEDQAGLVSALKVALQREGYAVDGAGSVADALDKLGLNAYDLVVLDVNLPDGSGF 60 Query: 61 EVLRALRVAKISTP------VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 EV ALR + + +L+ + ++D+VRGL GADDY++KPF EL AR+RA Sbjct: 61 EVASALRTGGVEIAGEEVPRILMLTARNRLDDRVRGLDVGADDYLTKPFELAELTARLRA 120 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEM 173 ++RR S++ G + ++ A+ + +G R + LT KE+ ++ L R ++ E Sbjct: 121 LLRRPSSDGTSVLTHGPIRLDT-ARQLARRGDRELGLTLKEFSVLRYLMTRPAFIVSAEE 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L H++D +P + + V + LR+KL+ +ETV GRGY LR+ Sbjct: 180 LLEHVWDENADPFTQTVRVTVGTLRRKLT-VGDEPPALETVVGRGYRLRD 228 >gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 234 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ + + L+ F V G + + + D I+LD+ L D+ GFE Sbjct: 9 RLLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQRRRPDLIVLDVMLPDMDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++R LR TPV L+ + EDKVRGL G DDY++KPF+ +E++ARIRA++RR+ G Sbjct: 69 IVRRLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRRTAG 128 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + D+ ++ ++ V G I L+ E++++ L L L+K L+H+ Sbjct: 129 DPYVPPPRLTFADIELDEESHEVWRGGEPIMLSPTEFKLLRFLMLNAGRVLSKGQILDHV 188 Query: 179 YDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D R E I++ ++ LR+K+ I T+ G GYV+R Sbjct: 189 WDHVRGE---GIVESYVSALRRKIDKDR--PRLIHTIRGVGYVMR 228 >gi|295837871|ref|ZP_06824804.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74] gi|295826712|gb|EFG64995.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74] Length = 274 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + + G + + + DA++LD+ L D+ G Sbjct: 38 VRVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGL 97 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R A+ TPV L+ + D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+ Sbjct: 98 SVLQLMRRAQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAG 157 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S++ GDL ++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 158 AGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRV 217 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++++I LR+K+ G + I T G GY+++ Sbjct: 218 WSYDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLIK 259 >gi|292486595|ref|YP_003529463.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Erwinia amylovora CFBP1430] gi|292897832|ref|YP_003537201.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291197680|emb|CBJ44775.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291552010|emb|CBA19047.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Erwinia amylovora CFBP1430] gi|312170655|emb|CBX78918.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Erwinia amylovora ATCC BAA-2158] Length = 233 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV V GE + L D ++LD+ + G + Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLD-STVDLLLLDVMMPKKNGLD 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ---------GHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q + + S LD + + G + LTG E+ ++ LL+ +++E Sbjct: 121 SEQQHLQHDNSSPTLDIDLLRLNPGRQEASFDGQTLDLTGTEFTLLYLLAQHLGQVVSRE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G + +T+ GRGY++ Sbjct: 181 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGHPWFKTLRGRGYLM 229 >gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 233 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A ++ L+ E + V V + G+ IEL + + + I+LD+ L G E Sbjct: 4 KILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEKPNLILLDIMLPGKDGNE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + + PV +L+ + DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VLREVRKTQ-NIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLRREQV 122 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ IV GDL V+ DA V +G I LT +E++++ L+ +T+E L Sbjct: 123 PDETVKTTKDIVIGDLIVHPDAYVVSRKGEEIELTHREFELLHYLARHIGQVMTREHLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV + +LR+K+ +I T G GY LR Sbjct: 183 TVWGYDYFGDVRTVDVTVRRLREKIEENPSNPLWIVTRRGVGYYLR 228 >gi|325970045|ref|YP_004246236.1| transcriptional regulator [Spirochaeta sp. Buddy] gi|324025283|gb|ADY12042.1| two component transcriptional regulator, winged helix family [Spirochaeta sp. Buddy] Length = 232 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 128/229 (55%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + + +L+ + T G++ + L + + D +ILD+GL + G E Sbjct: 4 KVLVVDDERDIQDVLAFVLEDAGYETRTTGRGDEALVLAQEWLPDIVILDIGLPGLNGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R+ + PV +LS + V GL+ GA+DY+SKPFN +EL+ R+ I+RR+R Sbjct: 64 V--CPRLVAMDIPVIVLSSHDRDDQIVEGLEVGAEDYVSKPFNLKELLLRVEKILRRTRP 121 Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G L++++ V ++G I+LT EY+++E L+ +T ++ EM L ++ Sbjct: 122 AEAAAALLAIGSLTIDMRKSAVSIEGELINLTPTEYKIVEFLAKHAHTPVSSEMLLQQVW 181 Query: 180 DGRDE---PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + PE ++ V I +LRKKL Y+ WG GY+L + + Sbjct: 182 NAEEWIQGPE--MVKVNISRLRKKLEKDPSNPRYLLNRWGYGYLLTDTS 228 >gi|322383663|ref|ZP_08057414.1| two-component response regulator YycG-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151875|gb|EFX44818.1| two-component response regulator YycG-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 241 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 130/230 (56%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGL-TDIP 58 M++L++ED++A+ + + LK + V + GE+ I L K + ILD+ L T++ Sbjct: 6 MKVLILEDEEAIRGFVRINLKRKGIEVVEAETGEEAIALIEKDSDIQIAILDVMLPTEMG 65 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF+V LRV + +L+ S DKV GL+ GADDYISKPF+ ELVARI A+ RR Sbjct: 66 GFDVCEQLRVKYPRMGIIMLTAKSQDTDKVLGLELGADDYISKPFSPVELVARINALNRR 125 Query: 119 SRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A++ ++ G ++LD + + G I LT E+ ++ + N +++++ Sbjct: 126 LQPVAEADEKNILEAGPFIIHLDERKLTKNGKEIDLTPTEFAIVRMFLENPNKSISRDEI 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++ + KI+DV I ++R+K+ YIETVWG GY+ + + Sbjct: 186 LDEVWGRHFIGDFKIVDVNIRRIRQKIEKNPSKPVYIETVWGNGYLWKRD 235 >gi|307298880|ref|ZP_07578682.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915305|gb|EFN45690.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 228 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 127/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K L ++ L+ + F V EDG++L +D IILD+ L + G+ Sbjct: 1 MKLLVVEDEKKLLENVAAFLERKGFLVDTAQDAEDGLDLALERNYDCIILDVILPGMGGY 60 Query: 61 EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E R LR S P+ I++ + I+ ++ GL+ GADDY+ KPF+ EL AR+RA++RR+ Sbjct: 61 EFCRFLREEIGSDVPIIIITALGEIDSRIEGLKIGADDYLPKPFDLRELEARVRALIRRN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ +I G L+ + + + LT +E ++EL T ++E + ++ Sbjct: 121 QLRSEPVIRYGPLTYDSRSGVFSCSKKELSLTSRESSILELFLRNPGTVFSREEITDKIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E I+DV+I +R+KL AAG + I+TV +GY LR Sbjct: 181 ETGFESRSNIVDVYIRYIRRKL-EAAGILDIIQTVPRKGYGLR 222 >gi|257440628|ref|ZP_05616383.1| KDP operon transcriptional regulatory protein KdpE [Faecalibacterium prausnitzii A2-165] gi|257196951|gb|EEU95235.1| KDP operon transcriptional regulatory protein KdpE [Faecalibacterium prausnitzii A2-165] Length = 236 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + I LK+ + GE I + + D ++LDLGL DI G EV Sbjct: 6 ILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAIMMTTSHNPDIMLLDLGLPDIDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R++R + P+ +LS S DK+ L +GADDY++KPF+ +EL+AR+R RR Sbjct: 66 IRSVRTWS-NLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLNLL 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G + V G L ++ A V + + +HLT EY+++ +L+ LT Sbjct: 125 ASDGINSPVFVNGPLKIDFSAGCVWLSENELHLTPIEYKLLCVLAHNVGKVLTHTSITQK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ E ++ + V++ LRKKL + I+T G GY + DE+ Sbjct: 185 VWGSTQENDIASLRVYMASLRKKLERCPDAPHLIQTHVGVGYRMLRVENDES 236 >gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] Length = 237 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 8/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +IED+ + + L+SE + VY + GE+G L + Y+ D I+LDL + G+E Sbjct: 4 RIAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLFQQYQPDLIVLDLMMPKKDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + +R + P+ IL+ + D++ GL GADDY++KPF+ ELV R++ ++RR Sbjct: 64 LCEEIR-QHSNVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILLRRGNQ 122 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I DL ++ + V V GH I LT KE++++ +++ ++ Sbjct: 123 ATIQMQEPVSEIIRFHDLDIHPAKRRVFVCGHEIELTVKEFEVLHIMAKHPRQVFSRSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++D E + V + +LR+KL +I TVWG GY + +E Sbjct: 183 LEQIWDFEYEGCTNTVTVLVSRLREKLEKHTTKNRWIHTVWGIGYRFDPDGGNE 236 >gi|229135507|ref|ZP_04264293.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196] gi|228647972|gb|EEL04021.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196] Length = 229 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|167968526|ref|ZP_02550803.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis H37Ra] Length = 226 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ + ++ + L + V G + + D +ILDLGL D+ G +V Sbjct: 4 VLVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPPDLVILDLGLPDMSGIDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR ++ PV +LS + DKV+ L +GADDY++KPF +E +AR+RA VRR+ Sbjct: 64 LGGLR-GWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122 Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A Q +I T +V+L K V G +HLT E+ M+E+L+ + + + L ++ Sbjct: 123 AELEQPVIETDSFTVDLAGKKVIKDGAEVHLTPTEWGMLEMLARNRGKLVGRGELLKEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + V++ +LR+KL + ++ T G GY Sbjct: 183 GPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGY 222 >gi|197119827|ref|YP_002140254.1| heavy metal transcriptional response regulator CusR [Geobacter bemidjiensis Bem] gi|197089187|gb|ACH40458.1| heavy metal transcriptional response regulator CusR [Geobacter bemidjiensis Bem] Length = 223 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M L++ED + A + L + V V G G+ + + ++D I+LDL L I GF Sbjct: 1 MYFLIVEDAEKTAEQLRRGLSEMSVTVDVASDGLKGLAMARERDYDLIVLDLMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR +TPV IL+ + D++ GLQ GADDY+ KP++ EL AR++A++RR + Sbjct: 61 EVVKRLREGGSTTPVMILTARDEVHDRITGLQLGADDYLVKPYSFAELCARVQALLRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q I DL+VN A G + LT KE+ ++ LL R ++ +++ Sbjct: 121 VVQQDEIQVADLTVNFFAHKATRAGKNLELTPKEFALLSLLIRRAGEVQSRLRIAERVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +KI+DV + LR K+ + K I TV G GY+L + Sbjct: 181 LGFDANLKIVDVKVAALRAKV-DGPYEKKLIHTVRGLGYILED 222 >gi|115375995|ref|ZP_01463242.1| putative two component response regulator protein [Stigmatella aurantiaca DW4/3-1] gi|115366994|gb|EAU65982.1| putative two component response regulator protein [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+EDD+ LA L+ V + G +G+ + +D ++LDL L G Sbjct: 16 IQVLLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLPGRDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +++ D+V GL++GADDY+ KP++ EL+ARIRA VRR+R Sbjct: 76 EVCRELRT-RSDVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRAR 134 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G+A Q L V G L ++ + T + G + LT E+ ++ +L+ R L++E L+ Sbjct: 135 GNAGPSLQPLNV-GRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLD 193 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + DE + IDV I +LR+KL ++TV G GY+L Sbjct: 194 LIKGSADEVFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 238 >gi|314965527|gb|EFT09626.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL082PA2] gi|315094280|gb|EFT66256.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL060PA1] gi|327329071|gb|EGE70831.1| KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL103PA1] Length = 227 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ +DD ++ + L + + V + G+ +E+ ++ D I+LDLG+ + G Sbjct: 1 MRILIADDDPQFLRALRITLGARGYEVLLARDGQHALEMAIDHKPDIILLDLGMPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V+ A+R S P+ ++SG S +KV L +GADDY++KPF+ +EL+ARIR + RR Sbjct: 61 KVIEAVR-GWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLTRRIG 119 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ G + V+L A TV G + LT E++++ELL + +T++ L+ Sbjct: 120 QDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTRQTMLSQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + ++I +LRKKL Y+ T G GY L Sbjct: 180 VWGSEHVADTGYLRLYISQLRKKLEPEPSRPRYLITDAGMGYRL 223 >gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 233 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 130/228 (57%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+A+A L++ ++ V + + GE G++ +F I+LD+ L GF+ Sbjct: 3 RILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----R 117 V R LR K + P+ ++S DK+RGL GA+DYI KPFN EL+AR+++ + R Sbjct: 63 VCRNLRAVK-NVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121 Query: 118 RSRG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++G ++ + +L+++L++ V + G+ + L KE++++ L+ N +K+ Sbjct: 122 LTQGTQRKENQLQIENLTIDLNSHEVFLDGNSLVLPNKEFELLVFLAKNPNIVFSKDQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E+ + V I ++R+K+ + +IETVWG GY R+ Sbjct: 182 EKIWGLDAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRFRK 229 >gi|217968617|ref|YP_002353851.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217505944|gb|ACK52955.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 229 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA + L+ F + V + G+ + + +D +ILDL L + G Sbjct: 1 MRLLLVEDHAELAEWVARSLRHAGFVLDVLNRGDHADQSLRTERYDLVILDLSLPGLDGL 60 Query: 61 EVLRALRV------AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 EVLR LR TPV +L+ S E++V GL GADDY+ KPF EL ARI+A Sbjct: 61 EVLRRLRNRESGPDKPAPTPVLVLTARGSTEERVHGLNLGADDYLPKPFELAELEARIKA 120 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++RR+ G+ L+ G L + + V G + LT +E ++E L R + +E Sbjct: 121 LLRRA-GNQVPLVRLGRLEFDTTTRMAAVDGQALALTPRELAVLEALLARVGRPVAREAL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + V+ I++++ +LRKKL G I T+ G GY+L E Sbjct: 180 FEKVFEFDADARVEAIEIYVSRLRKKLE---GAGVAINTLRGLGYLLAEK 226 >gi|149276901|ref|ZP_01883044.1| two-component response regulator [Pedobacter sp. BAL39] gi|149232570|gb|EDM37946.1| two-component response regulator [Pedobacter sp. BAL39] Length = 225 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 13/226 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLTDI 57 M+IL+IED+ LA + L ++ Y+ +L D E + +D I+LDL L Sbjct: 1 MKILIIEDEPELAKGMVGYLAGQS---YLCELATDYHQAWEKIGTHHYDCILLDLMLPGG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L L+ V I+S +++EDK+RGL+ GADDY++KPF+ EL ARI +++R Sbjct: 58 NGMKILDQLKAQNKEDGVIIISAKNALEDKIRGLELGADDYLAKPFHLSELSARIFSVIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + I G+L V+L AKTVEV G + LT KE+ ++ KN ++K H Sbjct: 118 RKNFANSNFIQQGELKVDLLAKTVEVAGSVVTLTKKEFDLLLFFMGNKNKVISKSALAEH 177 Query: 178 ----LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L D D + I I L+KKL+ AG NY++T++G GY Sbjct: 178 LSGDLADMLDNHD--FIYAHIKNLKKKLTE-AGSVNYLKTLYGNGY 220 >gi|331091983|ref|ZP_08340815.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402882|gb|EGG82449.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium 2_1_46FAA] Length = 229 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A + L+ F V V + GE G+ +++ IILDL L + GFE Sbjct: 3 KILIVEDEEAIADLEKDYLELSGFEVEVANDGEMGLSKALGEDYNLIILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRRVRDEK-NTPIIMISAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V V G T KE+ ++ L+ N TK+ Sbjct: 122 LIGSTIEENKVIEIRGLKIDTTARRVWVNGEEKTFTTKEFDLLTFLASHPNHVYTKDQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRFK 228 >gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 225 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 127/223 (56%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DD + ++ L + V + G+ GI L + FD +ILD+ + + G++V Sbjct: 5 ILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLLENNHFDLVILDVMMPGLDGWQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 +R PV +L+ +ED+V+GL GADDY+ KPF EL+ARIRA++RRS + Sbjct: 65 CGQIR-EYYDLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTELLARIRALLRRSGKT 123 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 AQ I++ DLS++ + V +++ T +EY++++L L KE+ + ++ Sbjct: 124 EAQPAILSYADLSMDTGTREVFRNKRQLNPTAREYELLKLFMENPRLVLNKELIMERIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +++V+I LR KL A G K I TV G GYVL+E Sbjct: 184 YDYQGESNVLEVYIVMLRNKLE-ACGEKRLIHTVRGAGYVLKE 225 >gi|329850817|ref|ZP_08265662.1| transcriptional activator protein copR [Asticcacaulis biprosthecum C19] gi|328841132|gb|EGF90703.1| transcriptional activator protein copR [Asticcacaulis biprosthecum C19] Length = 224 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ +D A I L V G + + FDAI+LD L G Sbjct: 1 MKILVADDQAETADFIRRGLSQAGHVVATVGTGTEALFRAMEESFDAIVLDRMLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR TPV +L+ M I D+V GL++GADDY++KPF EL AR+ I+RR Sbjct: 61 SVLKMLRAGGNRTPVILLTAMGGISDRVEGLENGADDYLTKPFALSELSARLNVIMRRPA 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ G++ ++L +TV G RI L +E M+E L + +TK M L ++ Sbjct: 121 VVEVETILRVGNIEMDLRKRTVHRAGKRIELQPREVLMLEELMRNVHRVMTKAMLLERVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P I++ I +LR KL NA + I TV G GY++R Sbjct: 181 DFDFDPHTNIVETHISRLRAKL-NAGFDDDAIITVRGAGYMIR 222 >gi|330446154|ref|ZP_08309806.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490345|dbj|GAA04303.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 230 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 130/229 (56%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED + +A+ I + + + + + G G EL K + +D IILD+ L + G+ Sbjct: 1 MKLLLIEDHQDIANIIFDFFEIKGYTLDYANNGLQGYELAKQHHYDLIILDIMLPRMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR I TP+ +L+ + ED + G +GADDY+ KPF+ E L ARI A+ RR + Sbjct: 61 MVCQQLREDGIDTPILMLTARDTREDTLEGFATGADDYLIKPFDLEILEARITALTRRRK 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + I+ GDLS++L + +I L ++ +++L+ LR L K+ +N L+ Sbjct: 121 GTTATQILQFGDLSLDLKTHIATRENRQISLNPTQFTILKLMLLRAPNILKKQEVMNTLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE ++ I +LR ++ + +YI+T+ GY L + K++ Sbjct: 181 -GDDEPENNVLRSHIYQLRTQI-DKGFSHSYIKTIPKVGYQLIKQMKED 227 >gi|167839646|ref|ZP_02466330.1| DNA-binding response regulator IrlR [Burkholderia thailandensis MSMB43] Length = 229 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F + G G+ + E+D IILD+ L G+ Sbjct: 1 MRILIVEDEPKTGMYLRKGLTEAGFVADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + STPV L+ + D+V+GL+ GADDY+ KPF+ ELVAR+R+I+RR + Sbjct: 61 TVLERLRRER-STPVLFLTASDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL ++L + QG + LT KE+ ++ LL R+ L + + ++D Sbjct: 120 ARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++D I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFNSDTNVVDAAIRRLRAKIDDAYEPK-LIHTVRGMGYVL 219 >gi|169824596|ref|YP_001692207.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302380339|ref|ZP_07268809.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|303235188|ref|ZP_07321807.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] gi|167831401|dbj|BAG08317.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302311829|gb|EFK93840.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|302493675|gb|EFL53462.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] Length = 229 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+K + +IE+ LK++N+NV G D +EL + + D ++D+ + + G E+ Sbjct: 4 IMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGFDALELMEKNKIDLFLVDIMMEGMDGLEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ ILS S + DKV GL GADDYI+KPF+ EL+ARI++ +RR Sbjct: 64 TQKIREVS-NAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLRRLELS 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ G L++N D K V + G I LT EY +I LL K T E + Sbjct: 123 KDKSLNGNIFSAGRLTINDDKKEVLIDGEEIKLTPYEYGIILLLLKNKGIVFTSEEIYEN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ KI+ V I +LR+K+ + I++V+G GY Sbjct: 183 VWEAPPYDVKKIVSVHISRLREKVEINPRRPDLIKSVYGMGY 224 >gi|15803567|ref|NP_289600.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 EDL933] gi|12517595|gb|AAG58159.1|AE005532_3 quorum sensing Escherichia coli regulator B [Escherichia coli O157:H7 str. EDL933] Length = 219 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALEERVXGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|15833161|ref|NP_311934.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. Sakai] gi|168747469|ref|ZP_02772491.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4113] gi|168753991|ref|ZP_02778998.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4401] gi|168760182|ref|ZP_02785189.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4501] gi|168767044|ref|ZP_02792051.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4486] gi|168773322|ref|ZP_02798329.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4196] gi|168781897|ref|ZP_02806904.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4076] gi|168785895|ref|ZP_02810902.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC869] gi|168797613|ref|ZP_02822620.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC508] gi|191167555|ref|ZP_03029367.1| transcriptional regulatory protein QseB [Escherichia coli B7A] gi|193062151|ref|ZP_03043247.1| transcriptional regulatory protein QseB [Escherichia coli E22] gi|193067451|ref|ZP_03048419.1| transcriptional regulatory protein QseB [Escherichia coli E110019] gi|194426360|ref|ZP_03058915.1| transcriptional regulatory protein QseB [Escherichia coli B171] gi|195937167|ref|ZP_03082549.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. EC4024] gi|208807848|ref|ZP_03250185.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4206] gi|208813501|ref|ZP_03254830.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4045] gi|208820089|ref|ZP_03260409.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4042] gi|209398732|ref|YP_002272499.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4115] gi|209920497|ref|YP_002294581.1| DNA-binding transcriptional regulator QseB [Escherichia coli SE11] gi|217327973|ref|ZP_03444056.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. TW14588] gi|218555595|ref|YP_002388508.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI1] gi|218696731|ref|YP_002404398.1| DNA-binding transcriptional regulator QseB [Escherichia coli 55989] gi|254794977|ref|YP_003079814.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. TW14359] gi|256019057|ref|ZP_05432922.1| DNA-binding transcriptional regulator QseB [Shigella sp. D9] gi|260845779|ref|YP_003223557.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O103:H2 str. 12009] gi|260857158|ref|YP_003231049.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O26:H11 str. 11368] gi|260869779|ref|YP_003236181.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O111:H- str. 11128] gi|261228037|ref|ZP_05942318.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O157:H7 str. FRIK2000] gi|261254893|ref|ZP_05947426.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O157:H7 str. FRIK966] gi|291284403|ref|YP_003501221.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O55:H7 str. CB9615] gi|300818789|ref|ZP_07098995.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300821609|ref|ZP_07101755.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300923683|ref|ZP_07139710.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|307310347|ref|ZP_07589995.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309793589|ref|ZP_07688015.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|331654630|ref|ZP_08355630.1| transcriptional regulatory protein QseB [Escherichia coli M718] gi|331669956|ref|ZP_08370801.1| transcriptional regulatory protein QseB [Escherichia coli TA271] gi|331679095|ref|ZP_08379767.1| transcriptional regulatory protein QseB [Escherichia coli H591] gi|332280158|ref|ZP_08392571.1| transcriptional regulatory protein qseB [Shigella sp. D9] gi|21759373|sp|Q8XBS3|QSEB_ECO57 RecName: Full=Transcriptional regulatory protein qseB gi|13363379|dbj|BAB37330.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|187771006|gb|EDU34850.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4196] gi|188017926|gb|EDU56048.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4113] gi|189000655|gb|EDU69641.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4076] gi|189358454|gb|EDU76873.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4401] gi|189363668|gb|EDU82087.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4486] gi|189369277|gb|EDU87693.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4501] gi|189374171|gb|EDU92587.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC869] gi|189379675|gb|EDU98091.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC508] gi|190902412|gb|EDV62149.1| transcriptional regulatory protein QseB [Escherichia coli B7A] gi|192932371|gb|EDV84969.1| transcriptional regulatory protein QseB [Escherichia coli E22] gi|192959408|gb|EDV89843.1| transcriptional regulatory protein QseB [Escherichia coli E110019] gi|194415668|gb|EDX31935.1| transcriptional regulatory protein QseB [Escherichia coli B171] gi|208727649|gb|EDZ77250.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4206] gi|208734778|gb|EDZ83465.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4045] gi|208740212|gb|EDZ87894.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4042] gi|209160132|gb|ACI37565.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4115] gi|209759568|gb|ACI78096.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209759570|gb|ACI78097.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209759572|gb|ACI78098.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209759574|gb|ACI78099.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209759576|gb|ACI78100.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209913756|dbj|BAG78830.1| two-component response regulator [Escherichia coli SE11] gi|217320340|gb|EEC28765.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. TW14588] gi|218353463|emb|CAU99558.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli 55989] gi|218362363|emb|CAQ99987.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli IAI1] gi|254594377|gb|ACT73738.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O157:H7 str. TW14359] gi|257755807|dbj|BAI27309.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O26:H11 str. 11368] gi|257760926|dbj|BAI32423.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O103:H2 str. 12009] gi|257766135|dbj|BAI37630.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O111:H- str. 11128] gi|290764276|gb|ADD58237.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O55:H7 str. CB9615] gi|300420050|gb|EFK03361.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300525747|gb|EFK46816.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300528574|gb|EFK49636.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|306909242|gb|EFN39737.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|308122546|gb|EFO59808.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|315062336|gb|ADT76663.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli W] gi|320189376|gb|EFW64035.1| Two-component system response regulator QseB [Escherichia coli O157:H7 str. EC1212] gi|320201937|gb|EFW76512.1| Two-component system response regulator QseB [Escherichia coli EC4100B] gi|320640099|gb|EFX09671.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. G5101] gi|320645396|gb|EFX14405.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H- str. 493-89] gi|320650708|gb|EFX19165.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H- str. H 2687] gi|320656403|gb|EFX24310.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661775|gb|EFX29183.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7 str. USDA 5905] gi|320666927|gb|EFX33903.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. LSU-61] gi|323154721|gb|EFZ40920.1| transcriptional regulatory protein qseB [Escherichia coli EPECa14] gi|323163077|gb|EFZ48910.1| transcriptional regulatory protein qseB [Escherichia coli E128010] gi|323173733|gb|EFZ59362.1| transcriptional regulatory protein qseB [Escherichia coli LT-68] gi|323178730|gb|EFZ64306.1| transcriptional regulatory protein qseB [Escherichia coli 1180] gi|323377078|gb|ADX49346.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323946732|gb|EGB42752.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|324018133|gb|EGB87352.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|324119636|gb|EGC13517.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|326337729|gb|EGD61563.1| Two-component system response regulator QseB [Escherichia coli O157:H7 str. 1125] gi|326347293|gb|EGD71018.1| Two-component system response regulator QseB [Escherichia coli O157:H7 str. 1044] gi|331048012|gb|EGI20089.1| transcriptional regulatory protein QseB [Escherichia coli M718] gi|331062869|gb|EGI34783.1| transcriptional regulatory protein QseB [Escherichia coli TA271] gi|331073160|gb|EGI44483.1| transcriptional regulatory protein QseB [Escherichia coli H591] gi|332102510|gb|EGJ05856.1| transcriptional regulatory protein qseB [Shigella sp. D9] Length = 219 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|332284405|ref|YP_004416316.1| two-component transcriptional regulator [Pusillimonas sp. T7-7] gi|330428358|gb|AEC19692.1| two-component transcriptional regulator [Pusillimonas sp. T7-7] Length = 235 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 3/229 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGFEV 62 L+IEDD+ A I + V G +G++ + IILD L + I G + Sbjct: 6 LIIEDDRDNARYIADGFRELGHWPVVCHDGAEGLQRATSEPWHIIILDRMLPNQIDGLSI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR I TPV +LS +++++++VRGL+SG DDY++KPF EL+ R A+VRRS+ + Sbjct: 66 LTTLRGVGIKTPVIVLSALTALDERVRGLKSGGDDYLTKPFALIELLTRAEALVRRSQSN 125 Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + ++T DL ++L + G + L +E +++ + + + LT+ M L ++ Sbjct: 126 ASNRVLTVADLRLDLTSSKATRSGKPLSLQPRETRLLTYMMMHPDQVLTRAMLLGAVWGY 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAKDET 229 + P+ +ID + +LR+K+ G I TV G GY L + +DET Sbjct: 186 QFNPQTNVIDAAVSRLRQKVDGDQQGPALIHTVRGVGYTLTSQPGRDET 234 >gi|262377412|ref|ZP_06070635.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262307642|gb|EEY88782.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 237 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 9/221 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ + +++ L+++ + + + G+ G+EL D +ILDLGL D+ G+EV Sbjct: 14 VLIIDDENQIRKFLDIALRAQGYKTLLAENGQKGLELLALQGADLVILDLGLPDLDGYEV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR PV +LS ++ E+KV+ L +GA+DY++KPF+ +EL+ARIR ++R+ H Sbjct: 74 LSELRTWS-HVPVIVLSVRANEEEKVKLLDAGANDYVTKPFSVQELMARIRVLLRQ---H 129 Query: 123 AQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + T G L ++ + V + + LT KEYQ++ LL+ K +T+ L Sbjct: 130 QHSTVDTAIFDDGVLKIDFSKRQVFLNQQLLSLTRKEYQLLNLLAKNKGQLITQPQILKE 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218 L+ + + + + + KLR KL++ A YI T G G Sbjct: 190 LWGPTHQEDTHYLRILVAKLRVKLNDNAVQPKYIITEPGVG 230 >gi|239981886|ref|ZP_04704410.1| two-component system response regulator [Streptomyces albus J1074] gi|291453741|ref|ZP_06593131.1| two-component system response regulator [Streptomyces albus J1074] gi|291356690|gb|EFE83592.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ + + + D ++LD L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDQMLPGRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVARIRA +RRS Sbjct: 64 VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGY 220 >gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134] gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134] Length = 232 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 16/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD +A IE+ LK E + V GE IE+ + D ++LD+ + + G+EV Sbjct: 6 ILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKMDGYEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R K + P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 66 TRQIR-TKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLTL 124 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT-----K 171 + S++ G + ++ + +TV V G RI LT KE+ ++ LL+ + + Sbjct: 125 NQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENIFQ 184 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ N YD + + V I LRKKL I+T+WG GY Sbjct: 185 QIWTNDYYDDNNN----TVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTF 230 >gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 234 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + +++ L+ E + VY + G +E+ + + D +ILD+ L + GFE Sbjct: 9 RILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALEMARKVKPDLMILDIMLPKMDGFE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL L+ P ILS DKV G GADDY+ KPF EL+ R+RAI+RR+ G Sbjct: 69 VLAQLQSTG-GVPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILRRTAG 127 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + D+ +N ++TV V+G + LT KE+ ++ LL+ ++E L Sbjct: 128 AGAPVDEDRPLKFRDIEINRSSRTVIVRGQPVDLTPKEFDLLWLLASHPGHVFSREALLQ 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V + +LR+K+ G I+T+WG GY Sbjct: 188 RVWHSEYSGDEAALTVCVRRLREKIERDPGHPELIKTIWGIGY 230 >gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 228 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ + I LK + F++ G D + + D ++LD+ + D+ GF Sbjct: 5 MHILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPVDLVVLDIMMPDMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R P+ L+ S ED++RGL+ GADDYI KPF+ EL ARI +RR R Sbjct: 65 EVCQRIRQTS-QIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIETTLRRIR 123 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + +S I GD+ ++ D + V + I+LT +E+ ++ L L + ++E L Sbjct: 124 GLSLKRSRIQFGDIEIDQDGRQVYIHQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKL 183 Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ ++ +D I LR KL G + +I+TVWG GY E Sbjct: 184 WESHSTSGSLRTVDTHIKTLRLKLK---GAERHIKTVWGVGYKFEEE 227 >gi|153811679|ref|ZP_01964347.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174] gi|149832420|gb|EDM87505.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174] Length = 233 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + + I LK+ + + G + I + D I+LDLGL D+ G +V Sbjct: 6 ILIVEDDRPIRNLIVTTLKTHEYKYLTAENGREAILEASSHNPDIILLDLGLPDMEGVDV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ +R + P+ ++S S DK+ L +GADDYI+KPF+ EEL+ARIR RR Sbjct: 66 IKKIRTWS-NMPIIVISARSEDSDKIEALDAGADDYITKPFSVEELLARIRVTQRRLAVI 124 Query: 119 SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G Q ++ + G+L ++ A ++G +HLT EY+++ LL LT Sbjct: 125 QTGEIQKTAVFINGELKIDYTAGCTYMRGEELHLTPIEYKLLCLLYCNVGKVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +V + VF+ LRKKL + YI+T G GY Sbjct: 185 QIWGRSSENDVASLRVFMATLRKKLESDKNEIQYIQTHIGIGY 227 >gi|126731908|ref|ZP_01747712.1| two component response regulator [Sagittula stellata E-37] gi|126707735|gb|EBA06797.1| two component response regulator [Sagittula stellata E-37] Length = 226 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ILL EDD A I LK + F V +V D G + + C + + D I+D + + G Sbjct: 1 MKILLAEDDPKSADYICKGLKEQGFVVDWVAD-GREALTYCLYNDADLAIVDRMMPGMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +++ALR AK + PV L+ +S ++D+V GL +G DDY+ KPF+ EL+ARI + RR Sbjct: 60 LSLVKALRAAKSNLPVIFLTALSDVDDRVDGLMAGGDDYLVKPFHLSELLARITVLGRRP 119 Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + Q + +V DL +NL + + QG I L GKE+ +++L ++ + L Sbjct: 120 KQSTQEPTELVVHDLKLNLLTRQAQRQGRNIDLLGKEFSLLQLFMENPGRIFSRTLILEK 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D +P +++ + KLR+K+ + I TV GY +R Sbjct: 180 IWDFNFDPGTTVVETHVSKLRQKV-DKPFDVALIHTVRNMGYTIR 223 >gi|91785401|ref|YP_560607.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689355|gb|ABE32555.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 245 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 118/228 (51%), Gaps = 12/228 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59 IL+++DD + + L+ F V D +DG+ L + + + I+LD+ + ++ G Sbjct: 5 ILVVDDDPVVRELVSGYLQGRGFKV---DTLQDGMALQRQLQHERPALIVLDIMMPELDG 61 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 LRALRVA PV +L+ + D+V GL+ GADDY+ KPF ELVARIR ++RR Sbjct: 62 ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S ++ G VN A+ + G RI L E+ M+++ T LT+ Sbjct: 122 GSIAPSAPEQRAPYRFGRFEVNFPARELRRDGERIALRSSEFAMLKIFVTHAMTVLTRAQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L L+ + + +DV I +LR+ + Y++TVWGRGYV Sbjct: 182 LLEKLHGNSELHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229 >gi|331268264|ref|YP_004394756.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329124814|gb|AEB74759.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 216 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 130/223 (58%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD A+ IE+ L+ + V GE+ E+ + D ++LD+ L I GF Sbjct: 1 MRILVVEDDLAIGDLIEINLQMSGYEVLKAIDGEEAKEVFDKEDIDLVLLDVMLPKIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ ++ K PV L+ +S+ DKV+GL+ GADDYI KPF EL+ARI + RR Sbjct: 61 QLIKYIK--KKDIPVIFLTAKNSVIDKVKGLRLGADDYIVKPFENIELLARIEVVERRY- 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I ++ V+++ + V++ G + LT KE+Q++ L KN L++E LN ++ Sbjct: 118 NKDDKIIKFKNIEVDINKRIVKLNGDYVELTLKEFQLLLLFIKNKNIALSREQILNKVWG 177 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +D+ + +LR+KL +N I+T++ GY L+E Sbjct: 178 YDYVGETRTVDIHVNRLREKLD----LRNNIKTIFKVGYRLQE 216 >gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 228 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++G Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121 Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I V GD+S+ + V V+G + KE++++E L K +T+ ++ ++ Sbjct: 122 AVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQLIDRIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + K +DV + ++R K+ Y+ TV G GY Sbjct: 182 GSDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGY 221 >gi|299536837|ref|ZP_07050144.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] gi|298727661|gb|EFI68229.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] Length = 228 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+ ++A L+ F V + GEDG++ +D IILD+ L I GF+ Sbjct: 3 KILLIEDEVSIAELQRDYLEINGFTVDIQHHGEDGLQQALKGNYDLIILDIMLPGISGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R + P+ +S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAVH-NMPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 121 Query: 121 --GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H Q+ ++ ++++ A+ V V G I T KE+ ++ N L+KE Sbjct: 122 LATHQQTNHMMSIHGITIDTSARKVFVNGEEIAFTTKEFDLLVFFVRHPNQVLSKEQLYE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +V + V I KLR+K+ ++ETVWG GY Sbjct: 182 RNWGYESAADVSTVTVHIRKLREKIEREPAHPKFLETVWGAGY 224 >gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +IL+++DDK + + I + L++E T ED IE K E FD I+LD+ + ++ Sbjct: 4 KILIVDDDKDIRNLISVYLENEGLQ---TQKAEDAIEALKLLEEKEFDLILLDVMMPNMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E +R + + P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RR Sbjct: 61 GIEACLKIREEQ-TIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRR 119 Query: 119 SRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + ++ I L++N D + V V+ + LT KE+ ++ELL+ K L+ E Sbjct: 120 HKKYNTDTNKNKNTIEMVGLTINSDTRQVWVKNQEVRLTPKEFDILELLARNKGMVLSVE 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I K+R K+ + YI+TVWG GY Sbjct: 180 KIYEAVWKEQFYKSNNNVMVHITKIRDKIEEDSKHPIYIKTVWGVGY 226 >gi|168185636|ref|ZP_02620271.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] gi|169296321|gb|EDS78454.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] Length = 227 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D+++L + +++ L EN+ V + G+D +EL + D ++LDL L DI GF Sbjct: 1 MKILLVDDEESLLNLVKINLMFENYEVITAECGKDAVELFQTQSPDLVVLDLMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V+ ++ P+ +LS + I D++ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 QVIHEIQEINSEIPIVVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S ++I G + + D + V + + T E++++ L+ T+E Sbjct: 121 KAKLLSNKKQVNIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEILVLMVKNSYKVFTREE 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + +D+ I ++RKKL + I+T++G GY Sbjct: 181 LLDTIWGYDFSGNTRAVDIHIKRIRKKLLDHEDA---IKTIYGVGY 223 >gi|160914841|ref|ZP_02077055.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991] gi|158433381|gb|EDP11670.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991] Length = 246 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 136/244 (55%), Gaps = 21/244 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57 ++IL++EDD + + I L++ N Y DL +G + + +D ++LDLGL D Sbjct: 5 IKILIVEDDGPIRNLIATALQT---NAYKYDLAANGKTALLALSTHHYDIVLLDLGLPDK 61 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E++ LR +TP+ ++S ++ EDK+ L +GADDY++KPF+ EEL+AR+R+ +R Sbjct: 62 DGIEIIDQLRTFS-TTPIIVISARTNDEDKIAALDAGADDYLTKPFSVEELLARVRSTLR 120 Query: 118 RSR-------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R++ + GDL ++ ++TV QG +HL EY ++ LL+ LT Sbjct: 121 RAQFLENQKSQREEIAFENGDLKIDYPSRTVYFQGKELHLMPIEYNLLCLLAHNVGRVLT 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL------REN 224 + L+ ++ E ++ + V++ LRKK+ + K YI+T G GY + +E+ Sbjct: 181 HQYILDKVWTNAMESDLSSLRVYMTTLRKKIEKNSMQK-YIQTHIGVGYKMIRVTDTKED 239 Query: 225 AKDE 228 + DE Sbjct: 240 SNDE 243 >gi|126740175|ref|ZP_01755864.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718630|gb|EBA15343.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 234 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++EDDK + L+ E V + G +G+ ++D ++LD L D+ G Sbjct: 11 VKILVVEDDKTTGPYVAAGLREEGHTVDLLANGREGLVQAAAADYDVLVLDRMLPDLDGL 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A TP +L+ +S + D++ GL++GADDY+ KPF EL AR+ A+ RR Sbjct: 71 SLIKTLRGAGNRTPAIMLTAVSGVNDRIEGLEAGADDYLVKPFAFGELSARVAALARRPG 130 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + + GDL ++L V G I L +E+ ++E L RK T+ M L ++ Sbjct: 131 LQQQETRLCVGDLEMDLVQHKVTRAGQEIPLLPREFTLLEHLLRRKGRVQTRTMLLEAVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P+ +++ I +LR K+ + IETV G GY Sbjct: 191 DITFDPQTNVVETHISRLRAKVDRPFDNE-LIETVRGAGY 229 >gi|90578805|ref|ZP_01234615.1| hypothetical two-component response regulator [Vibrio angustum S14] gi|90439638|gb|EAS64819.1| hypothetical two-component response regulator [Vibrio angustum S14] Length = 230 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 132/229 (57%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIED + +A+ I + +++ + + G G EL K + +D IILD+ L + G+ Sbjct: 1 MKLLLIEDHQDIANIIFDFFEIKSYTLDYANNGIQGYELAKQHHYDLIILDVMLPRMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR I TP+ +L+ + ED + G +GADDY+ KPF+ E L ARI A+ RR + Sbjct: 61 IVCQQLRKDGIDTPILMLTARDTREDTLEGFATGADDYLIKPFDLEILEARITALTRRRK 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ + I+ GDL ++L + +I L + +++L+ LR TLTK+ +N L+ Sbjct: 121 GNTAAQILQFGDLFLDLKTHIATRENRQISLNPTLFTILKLMLLRAPDTLTKQELINTLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G DEPE ++ I +LR ++ + +YI+T+ GY L + K++ Sbjct: 181 -GDDEPENNVLRSHIYQLRTQI-DKGFNHSYIKTIPKVGYQLIKQIKED 227 >gi|16332195|ref|NP_442923.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1653824|dbj|BAA18735.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|122893699|gb|ABM67667.1| CcaR [Synechocystis sp. PCC 6803] Length = 234 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 4/233 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ L + + V + + E+D +ILD+ L ++ G Sbjct: 1 MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + R P+ +++ +I DK+ GL +GADDY+ KP + EL AR+RA++RR Sbjct: 61 TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q ++ G + LD T EV + LT KEY ++ELL L++ M ++ + Sbjct: 121 ATCQPVLEWG--PIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSI 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + PE + V + LR+KL +A + IETV G GY L + C+ Sbjct: 179 WKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLANLTEKSLCQ 231 >gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 238 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++V GE+ ++ + D I+LDL L I G E Sbjct: 5 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + TP+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR+ Sbjct: 65 VARQIR-KEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 123 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A + GDL+++ DA TV +G I LT +E++++ L+ +T+E Sbjct: 124 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 184 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 233 >gi|255654544|ref|ZP_05399953.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296449314|ref|ZP_06891097.1| response regulator [Clostridium difficile NAP08] gi|296880754|ref|ZP_06904704.1| response regulator [Clostridium difficile NAP07] gi|296261841|gb|EFH08653.1| response regulator [Clostridium difficile NAP08] gi|296428249|gb|EFH14146.1| response regulator [Clostridium difficile NAP07] Length = 234 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDDK + I++ L+++N+ TD G I L + D IILDLGL DI G EV Sbjct: 7 VLIVEDDKPICKFIKVSLETQNYRCVETDNGGTAISLIHSLDPDLIILDLGLPDIDGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + +R + + ++S DKV L GADDY++KPF+ EL+AR+R +R Sbjct: 67 IGRVRACAKTNKIIVVSAREHERDKVEALDGGADDYLTKPFSVTELLARVRVALRNKAQQ 126 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A +L ++ + TV + IHLT EY++IEL+S LT + ++ Sbjct: 127 GNINNDAPKSFEVKNLKIDYENHTVLINDEEIHLTPIEYKIIELMSKYSGRVLTHKFIID 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E E + + VF+ +R+K+ YI T G GY Sbjct: 187 KVWGNYYESENQSLRVFMASIRRKIEKNPAQPEYILTEVGVGY 229 >gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 239 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 129/234 (55%), Gaps = 8/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ ++ + LK E ++V E+ +++ + + D I+D+ L + GFE+ Sbjct: 6 ILVIDDEPSIVELLSFNLKKEGYDVLKAYDAEEALKIVEDNDVDMFIVDIMLPGMDGFEL 65 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +R LR + TPV LS S DKV GL+ GADDYI+KPF+ E +ARIRAI RR + Sbjct: 66 VRNLRSTEKHRHTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREALARIRAIFRRIQ 125 Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ I DL ++ + V V+G ++LT E++++ L+ + ++++ Sbjct: 126 QSVQAKEERPKKITARDLEIDTEKYEVRVRGKLVNLTPLEFELLRFLAENEGKVFSRDVL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K++ Sbjct: 186 LDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239 >gi|162456898|ref|YP_001619265.1| response regulator [Sorangium cellulosum 'So ce 56'] gi|161167480|emb|CAN98785.1| response regulator [Sorangium cellulosum 'So ce 56'] Length = 270 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ + + L+ E F+V G+DG+ L + + DAI+LDL L D GF+ Sbjct: 46 KILIIEDEPHIVLGLTDALEFEGFSVASASKGKDGVLLARQEKPDAILLDLMLPDTNGFK 105 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR P+ +L+ DK+RGL +GADDY++KPF+ EL+AR+RA+ RR+ Sbjct: 106 VCEDLRRWDAFVPIIMLTARGQEIDKIRGLDAGADDYVTKPFSVGELIARLRALFRRAAR 165 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ + G++ +N+ A TV L+ E +++ LL R +++E L + Sbjct: 166 PAEAPVEVFSIGNVQINMTAHTVSRGSRSDQLSFYEVELLRLLHERLGQPVSREEILQKI 225 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + P + +D FI KLRKK+ + +I TV+G GY L Sbjct: 226 WGIEAGPSNRTVDNFIVKLRKKIERSPDKPEHILTVYGFGYKL 268 >gi|320107312|ref|YP_004182902.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925833|gb|ADV82908.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 235 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 123/219 (56%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + ++ + + + ++V V G+ G++ + + A++LDL L +I G + Sbjct: 13 QILVVEDDPRMQKILQRVFREQGYHVTVCGDGQSGLDAFRAGRYSAVVLDLVLPNIFGRD 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSR 120 V + ++ + PV ++S ++ + DKV L+ GADDY++KPF+ EL+AR++A + RR + Sbjct: 73 VCKTIKSEQEDMPVIVVSAITDVADKVLLLELGADDYVTKPFSPRELMARVQAAMRRRQK 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + GD ++ T G I LT E+++++ L++++ LN ++ Sbjct: 133 TSAITTYSFGDCEIDFSKMTARRGGVSITLTAHEFKLLKYFVEHAERVLSRDVLLNEVWG 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 P + +D I KLR+KL + Y+ TV+G GY Sbjct: 193 YNSYPTTRTVDNQILKLRQKLEPESAEPRYLRTVYGAGY 231 >gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 221 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 R+LL++DD A+ + L+ E + V DG+E L K + ++LDL L + G+ Sbjct: 3 RVLLVDDDPAIREVLSAYLRQEGYEVVEA---ADGLEALGKIPQASLVVLDLMLPRLSGW 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR PV +L+ E+++RGL GADDY++KPF+ E+VAR+RA++RRS Sbjct: 60 EVARELRRDYPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLRRSG 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ + G+L + + + G + L+ E+ ++ L+ ++E L ++ Sbjct: 120 LKAE--LAFGELVIRPREREAYLAGEPLALSKLEFDLLLTLAQHPRLVWSRERLLERVW- 176 Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G D P V +++DV I LRKKL YIETV G GY +E Sbjct: 177 GTDFPGVDRVVDVHIAGLRKKLGEDGDNPRYIETVRGVGYRFQEE 221 >gi|167765966|ref|ZP_02438019.1| hypothetical protein CLOSS21_00457 [Clostridium sp. SS2/1] gi|317497234|ref|ZP_07955558.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167712323|gb|EDS22902.1| hypothetical protein CLOSS21_00457 [Clostridium sp. SS2/1] gi|291558760|emb|CBL37560.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316895479|gb|EFV17637.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 232 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + + I LK+ ++ + G I ++ + I+LDLGL D+ G +V Sbjct: 6 ILVVEDDRPIRNLIVTTLKTHDYKYITAENGSSAILEASSHKPEIILLDLGLPDMEGVDV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AIV 116 ++ +R + P+ ++S S DK+ L +GADDYI+KPF+ +EL+ARIR A++ Sbjct: 66 IKKVRTWS-NVPIIVISARSEDVDKIEALDAGADDYITKPFSVDELLARIRVTQRRLALI 124 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + Q++ V G+L ++ A + ++ +HLT EY+++ LLS LT Sbjct: 125 QSGEEQEQAVFVNGELKIDYTAGSTYLKDKELHLTPIEYKLLCLLSHNVGKVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +V + VF+ LRKKL G YI+T G GY Sbjct: 185 QIWGSSLENDVASLRVFMATLRKKLQPDKDGMQYIQTHIGIGY 227 >gi|50841610|ref|YP_054837.1| two-component response regulator, KdpE [Propionibacterium acnes KPA171202] gi|282853167|ref|ZP_06262504.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes J139] gi|289424544|ref|ZP_06426327.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes SK187] gi|289427413|ref|ZP_06429126.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes J165] gi|295129651|ref|YP_003580314.1| DNA-binding response regulator KdpE [Propionibacterium acnes SK137] gi|50839212|gb|AAT81879.1| two-component response regulator, KdpE [Propionibacterium acnes KPA171202] gi|282582620|gb|EFB88000.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes J139] gi|289155241|gb|EFD03923.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes SK187] gi|289159343|gb|EFD07534.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes J165] gi|291375781|gb|ADD99635.1| DNA-binding response regulator KdpE [Propionibacterium acnes SK137] gi|313771208|gb|EFS37174.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL074PA1] gi|313806990|gb|EFS45488.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL087PA2] gi|313811899|gb|EFS49613.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL083PA1] gi|313814092|gb|EFS51806.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL025PA1] gi|313817774|gb|EFS55488.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL046PA2] gi|313821400|gb|EFS59114.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL036PA1] gi|313824655|gb|EFS62369.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL036PA2] gi|313826324|gb|EFS64038.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL063PA1] gi|313828890|gb|EFS66604.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL063PA2] gi|313832090|gb|EFS69804.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL007PA1] gi|313832894|gb|EFS70608.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL056PA1] gi|313839754|gb|EFS77468.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL086PA1] gi|314922627|gb|EFS86458.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL001PA1] gi|314926441|gb|EFS90272.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL036PA3] gi|314961462|gb|EFT05563.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL002PA2] gi|314969258|gb|EFT13356.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL037PA1] gi|314975328|gb|EFT19423.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL053PA1] gi|314977744|gb|EFT21839.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL045PA1] gi|314980122|gb|EFT24216.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL072PA2] gi|314982686|gb|EFT26778.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL110PA3] gi|314985281|gb|EFT29373.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL005PA1] gi|314990529|gb|EFT34620.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL005PA3] gi|315081718|gb|EFT53694.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL078PA1] gi|315082908|gb|EFT54884.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL027PA2] gi|315086743|gb|EFT58719.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL002PA3] gi|315088146|gb|EFT60122.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL072PA1] gi|315091346|gb|EFT63322.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL110PA4] gi|315097031|gb|EFT69007.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL038PA1] gi|315104999|gb|EFT76975.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL050PA2] gi|315107591|gb|EFT79567.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL030PA1] gi|315109998|gb|EFT81974.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL030PA2] gi|327332628|gb|EGE74363.1| KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL096PA2] gi|327333805|gb|EGE75522.1| KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL096PA3] gi|327334683|gb|EGE76394.1| KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL097PA1] gi|327444730|gb|EGE91384.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL013PA2] gi|327446589|gb|EGE93243.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL043PA2] gi|327448969|gb|EGE95623.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL043PA1] gi|328757844|gb|EGF71460.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL020PA1] gi|328759713|gb|EGF73310.1| KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL099PA1] gi|332674521|gb|AEE71337.1| KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes 266] Length = 227 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ +DD ++ + L + + V + G+ +E+ ++ D I+LDLG+ + G Sbjct: 1 MRILIADDDPQFLRALRITLGARGYEVLLARDGQHALEMAIDHKPDIILLDLGMPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V+ A+R S P+ ++SG S +KV L +GADDY++KPF+ +EL+ARIR + RR Sbjct: 61 KVIEAVR-GWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLTRRIG 119 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ G + V+L A TV G + LT E++++ELL + +T++ L+ Sbjct: 120 QDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTRQTMLSQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + ++I +LRKKL Y+ T G GY L Sbjct: 180 VWGSEHVTDTGYLRLYISQLRKKLEPEPSRPRYLITDAGMGYRL 223 >gi|332884908|gb|EGK05163.1| hypothetical protein HMPREF9456_03076 [Dysgonomonas mossii DSM 22836] Length = 228 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ ++ IE L F + + G E + ++D II+D+ + + G Sbjct: 1 MKILIVEDEQNISSFIERGLNISGFETEICNDGLHAWEKLQITDYDLIIMDIIMPFMSGL 60 Query: 61 EVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+ +A R TPV +L+ +S+ ED V+GL +GADDYI KPF EL ARI A++RRS Sbjct: 61 ELCKAYRQKFGYITPVILLTALSTTEDIVKGLNAGADDYIVKPFKLVELEARINALLRRS 120 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + ++ +L ++ + K G+ I+LT KEY ++E N L+++ L Sbjct: 121 KVSTEIEDDKILQISNLKLDTNTKQAIRDGNIIYLTAKEYLLLEYFMKNPNRVLSRQTLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++D + I+DV++ +R K+ G I TV G GY+L+E Sbjct: 181 ENVWDINFDTNTNIVDVYVNYIRNKIQ-PEGMDKLIHTVIGLGYILKE 227 >gi|314986976|gb|EFT31068.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL005PA2] Length = 227 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ +DD ++ + L + + V + G+ +E+ ++ D I+LDLG+ + G Sbjct: 1 MRILIADDDPQFLRALRITLGARGYEVLLARDGQHALEMAIDHKPDIILLDLGMPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V+ A+R S P+ ++SG S +KV L +GADDY++KPF+ +EL+ARIR + RR Sbjct: 61 KVIEAVR-GWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLTRRIG 119 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ G + V+L A TV G + LT E++++ELL + +T++ L+ Sbjct: 120 QDEVDEEPIVAFGSVWVDLAAHTVARDGANVRLTPTEWRVLELLIRNEGRLVTRQTMLSQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + ++I +LRKKL Y+ T G GY L Sbjct: 180 VWGSEHVTDTGYLRLYISQLRKKLEPEPSRPRYLITDAGMGYRL 223 >gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 238 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L ++ +ILDL + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYTVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S AQ +L G L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNNTAQEKTTLSFKG-LTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKT 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 182 QLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGY 228 >gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 233 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 129/231 (55%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G++ +E+ + + D +ILDL L ++ G + Sbjct: 3 KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL+AR++A++RRS Sbjct: 63 VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRRSEL 121 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + GDL + DA V+ G + LT +E++++ L+ +T+E Sbjct: 122 IPDSHVDESSPKELFIGDLQILPDAFVVKKHGKELELTHREFELLHHLATHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYIRNN 232 >gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] Length = 223 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 130/222 (58%), Gaps = 7/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD ++ + LK++ ++V G + EL K ++D I+LDL L + G + Sbjct: 3 RVLLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKYDIIVLDLMLPGVNGLD 62 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R +R+ I+ TP+ +L+ + + KV GL++GADDY++KPF+ +EL+ARI A++RR+ Sbjct: 63 LCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKELLARIEAVLRRA 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+++ L G + + +K+V V G IHLT E Q++E ++E L ++ Sbjct: 123 -GYSEVLEFEG-IVEDKRSKSVTVDGKPIHLTKTELQLLEFFLEHPEQLFSREELLEKIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +DV+I +LRKKL + +++T+ GY L Sbjct: 181 GVEHNETTRTVDVYISRLRKKLGDKG---KFLKTLPRLGYKL 219 >gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri L37603] gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri L37603] Length = 241 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 129/237 (54%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F + G++ +L ++ I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFETHEARDGKEAYQLAMENDYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 65 ATQLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTT 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 TPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ ++ + I+TVWG GY N DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNKVSSDAAHMIQTVWGVGYKFEVNTNDEPA 240 >gi|284037506|ref|YP_003387436.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283816799|gb|ADB38637.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 224 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 128/227 (56%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 M+ILL+ED+ +LA I ++SE + + DL DG+ L +D I+LD+ L I Sbjct: 1 MKILLVEDEVSLASFIRKGVESEGYEI---DLAYDGLVGQSLADNKTYDVIVLDVNLPHI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFE+ R ++ V +L+ + S+ DK G +GADDY+ KPF EL+ RI+A+ R Sbjct: 58 NGFELCRHIKREMPRQSVMLLTALDSLPDKESGFGAGADDYLVKPFEFRELMLRIKALAR 117 Query: 118 RSRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R+ + ++++ DL ++ +A +V G RI LT +EY ++E L + + T+++ Sbjct: 118 RNSDFSGLKTVLRVADLELDTEAHSVYRAGQRIDLTAREYALLEYLMVNQGRTVSRVDIA 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D + +I+V+I LRKK+ K + T+ G GYVLR Sbjct: 178 EKVWDLHFDTSTNVIEVYINYLRKKIDKDYSQK-LVHTIIGMGYVLR 223 >gi|126656902|ref|ZP_01728080.1| two-component system response regulator [Cyanothece sp. CCY0110] gi|126621740|gb|EAZ92449.1| two-component system response regulator [Cyanothece sp. CCY0110] Length = 223 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D+ L + +L E ++V V D G+ G EL +D +ILD L PG Sbjct: 1 MKILLVDDEAELTEPLYHVLSHEGYDVDVADNGQKGYELALQNNYDLLILDWMLPGKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + + LR +TPV L+ +++D+V GL +GADDY+ KPF EL+AR+RA++RR Sbjct: 61 SICQELRSQGQNTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRRFP 120 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + GDL ++ + + QG + L+ KE +++ + LT + Sbjct: 121 SLEGTGTGRLKIGDLELDPENQVAYRQGRMVSLSDKEVKLLTYFMQHPHQLLTHKQIYQF 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L++ ++P ++ I LR+K+ + I TV+G+GY Sbjct: 181 LWEEPEKPNSNVLAALIRLLRRKIEEES---PLIHTVYGKGY 219 >gi|299068908|emb|CBJ40149.1| Putative DNA-binding response regulator in two-component regulatory system with BasS (basR) [Ralstonia solanacearum CMR15] Length = 216 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 116/220 (52%), Gaps = 5/220 (2%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +IEDD L ++ L+ +N D + FDAI+LDLGL D G L Sbjct: 1 MIEDDLPLGTALARALRQAGYNTTWVRRLMDAQKWMTSNSFDAIVLDLGLPDGEGHLFLE 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 LR A+ PV I S ++ ++++GL GADD++ KPF +EL+AR+RA++RR G + Sbjct: 61 ELRAAQSDVPVIIASARDALSERLKGLDEGADDFLVKPFPVDELIARLRAVLRRHAGQST 120 Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184 + G L V K V G+ + LT +EYQ++ L R + +T+E ++ LY + Sbjct: 121 NRWNVGSLVVEPSQKRVTQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREGNR 180 Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++V I LR KL G+ I+T+ G GY++ N Sbjct: 181 VSANALEVVIHHLRGKL-----GEGVIQTIRGVGYMIGGN 215 >gi|291523773|emb|CBK89360.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528762|emb|CBK94348.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 229 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+A + L+ F V V + G G+ +FD ILDL L I GFE Sbjct: 3 RILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKQIREKK-NTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S ++ + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 KEIWNMDSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRFK 228 >gi|207738714|ref|YP_002257107.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|206592082|emb|CAQ58988.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 249 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 19/244 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE------------FDA 47 MR+LL+EDD + ++ L+ + F + +V D GE ++ FD Sbjct: 4 MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRD-GEAAVQAVGAPGAAAAAAESSASMFDL 62 Query: 48 IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107 ++LDLGL G +V+ +R I+ P+ IL+ ++ D+V GL +GADDY+ KPF+ +E Sbjct: 63 MLLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQE 122 Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 L AR+ A++RR G A L+ GD+ +N + V G + L+G+E+ ++ L R Sbjct: 123 LAARMHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFAVLHALLSRPGK 182 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++LY +E ++V+I LRKKL G ++I+ + G GYV+ Sbjct: 183 VWSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREVPT 237 Query: 228 ETCE 231 E Sbjct: 238 PPAE 241 >gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 226 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 133/227 (58%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++ +A IEL L E + V D G G+E+ + E D IILD+ L +I G Sbjct: 2 IKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGL 61 Query: 61 EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 EVLR R+ ++S P+ +L+ ++ DKV GL +GADDYI+KPF EEL+ARIR +++ Sbjct: 62 EVLR--RIRRVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I G L+++ V I LT +E+ ++++L KN LT+++ + Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E +IDV++ LR K+ + K I TV G GYV+++ Sbjct: 180 KVCGYNYVGETNVIDVYVRYLRTKIDDVFKVK-IISTVRGVGYVIKD 225 >gi|319442731|ref|ZP_07991887.1| two-component system response regulator TcsR5 [Corynebacterium variabile DSM 44702] Length = 231 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD+++ ++ L ++V GE+ L D +I+D L + G Sbjct: 1 MKILVVDDDRSVRDTLRQSLTFNGYDVVQATDGEEAQTLIGKENPDLVIMDGILPKVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR+LR + V +LS S + D+V GL +GADDY++KPF EEL+AR+R++ RRSR Sbjct: 61 EILRSLRGSGSEVLVLMLSQKSDVADRVAGLDAGADDYLTKPFALEELLARVRSLYRRSR 120 Query: 121 GHAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A ++ DL++N + + V RI LT E+ ++ELL L++ Sbjct: 121 RTAAAVAKDSKPLSFLDLTLNPETREVTRDERRISLTRTEFALLELLLRNARKVLSRNTI 180 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ G D P ++V+I LR+K + A G I TV G GYVLREN Sbjct: 181 LEEVW-GYDFPTSGNALEVYIGYLRRK-TEAEGEDRLIHTVRGVGYVLREN 229 >gi|300813866|ref|ZP_07094171.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512053|gb|EFK39248.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 223 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 113/202 (55%), Gaps = 7/202 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K L I LK + V + + G + +EL +D I+LDL L +I G Sbjct: 1 MRILIVEDEKDLCQMIAKSLKESGYEVDIANNGNEAMELLDVENYDLIVLDLNLPEIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R T + ILS S I+DKV GL GA+DY+SKPF+ +EL ARIR++ RR+ Sbjct: 61 EILEEFRTFNQDTKIIILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRSLTRRNF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +LS + + V++ I LT KE ++E L L + +++E ++H++D Sbjct: 121 ITNNQMLSYKNLSFDSKKRIVKIDDKEISLTRKELGILEYLLLNRGRPISQEELIDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLS 202 +D+F +R +S Sbjct: 181 SS-------VDLFSNSIRVHIS 195 >gi|299143988|ref|ZP_07037068.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518473|gb|EFI42212.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 230 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ A+ +++ L+ E ++VY GEDG+ + + + ++LD+ L I GFE Sbjct: 4 KILLVEDEDAIRKFVKINLEREGYDVYEAPTGEDGVAIAREVHPEIVVLDVMLPGIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V R LR + +L+ + DK+ GLQ G DDY++KPFN EL RI+++ RR Sbjct: 64 VCRILRGEFPELGIVMLTAKTEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLEP 123 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H ++LI+ ++ ++ + LT EYQ+++ L ++ LN + Sbjct: 124 EEHTNKNLIIFPPFKLDTYSRKFYKGDEELELTPTEYQIMKNFMQNPGKALNRDEILNLV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + KI+DV I +LR K+ A +IETVWG GY Sbjct: 184 WGEDFVGDSKIVDVNIRRLRSKIEENAAKPKFIETVWGLGY 224 >gi|126698058|ref|YP_001086955.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile 630] gi|254974096|ref|ZP_05270568.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-66c26] gi|255091495|ref|ZP_05320973.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile CIP 107932] gi|255099603|ref|ZP_05328580.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-63q42] gi|255313223|ref|ZP_05354806.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-76w55] gi|255515913|ref|ZP_05383589.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-97b34] gi|255649007|ref|ZP_05395909.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-37x79] gi|306519126|ref|ZP_07405473.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-32g58] gi|115249495|emb|CAJ67310.1| Two-component response regulator [Clostridium difficile] Length = 230 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ L +E LK++ V + G+ GIEL K E D IILD+ + + GFE Sbjct: 3 KILIIDDEMDLVMLLEDELKAKGHEVLIAYDGQAGIELSK-QEPDLIILDIMMPKMNGFE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +A+R + P+ LS S DK++GL G DDY++KPF EL+ARI A +RR + Sbjct: 62 VCQAIR-DDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +S + G L + + + +++ G I LT EY ++ELL+L ++E Sbjct: 121 SQYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + + + K+R K S K YI TVWG GY Sbjct: 181 YEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGY 225 >gi|163849055|ref|YP_001637099.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222527023|ref|YP_002571494.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670344|gb|ABY36710.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450902|gb|ACM55168.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 227 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 129/223 (57%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK LA IE +L E V V GE G++L +D I+D L G Sbjct: 1 MRILIVEDDKRLARLIERVLSEERHTVDVAWDGESGLDLLMQGVYDVAIIDWMLPGRDGP 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + RA R A++ T + +L+ IEDKV G +SGADDY+ KPF EEL+AR+RA+ RR Sbjct: 61 SLCRAARAARLPTALLLLTARGQIEDKVLGFESGADDYLVKPFAFEELLARVRALGRRFH 120 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A + G + ++L T R+ LT E++++E L TLT++ L+++ Sbjct: 121 PNLSANDELRVGTIVLDLRNYTARRGERRLDLTPTEWRLLEYLMRNVGQTLTRQQILDYV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +++DV+I LR+KL NA+G + I T+ G GY L Sbjct: 181 WSFEHDVQPQMVDVYISYLRRKL-NASGETDPINTIRGIGYRL 222 >gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A] gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A] Length = 234 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAASTGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ+ +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 122 AAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ Y+ TV G GY Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 227 >gi|325284496|ref|YP_004257035.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324316670|gb|ADY27781.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 221 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 20/230 (8%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-------DAIILDLGLT 55 IL+++DD A+ + LK+E V +E C Y D ILD L Sbjct: 4 ILIVDDDPAILEILRAYLKAEGHTV---------LEACDGYSAREQLPRADLAILDWMLP 54 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G ++ R R + ++ P+ +L+ EDK+RGL G DDY+ KPF+ E+VAR+RA+ Sbjct: 55 GVSGVDLAREARASGLTLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVVARVRAL 114 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +RR Q I GDL ++L + + G R+ L+ E+ ++ L+ +E L Sbjct: 115 LRRV--GVQEEIAVGDLRIDLRGHSASLSGERLELSKLEFDLLSALAQHPGMAWPRERLL 172 Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ G D P +++DV I LRKKL + + +IETV G GY RE Sbjct: 173 ERVW-GSDFPGTERVVDVHITGLRKKLGDTSDTPRFIETVRGVGYRFREE 221 >gi|228939139|ref|ZP_04101733.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972017|ref|ZP_04132634.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978626|ref|ZP_04138998.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|229150234|ref|ZP_04278455.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|228633206|gb|EEK89814.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|228781066|gb|EEM29272.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228787676|gb|EEM35638.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820508|gb|EEM66539.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 232 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 6 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 66 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESMR 232 >gi|207723030|ref|YP_002253448.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|206588219|emb|CAQ18783.1| two-component response regulator protein [Ralstonia solanacearum MolK2] Length = 249 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 19/244 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE------------FDA 47 MR+LL+EDD + ++ L+ + F + +V D GE ++ FD Sbjct: 4 MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRD-GEAAVQAVGAPGAAAAAAESSASMFDL 62 Query: 48 IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107 ++LDLGL G +V+ +R I+ P+ IL+ ++ D+V GL +GADDY+ KPF+ +E Sbjct: 63 MLLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQE 122 Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 L AR+ A++RR G A L+ GD+ +N + V G + L+G+E+ ++ L R Sbjct: 123 LAARMHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFAVLHALLSRPGK 182 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++LY +E ++V+I LRKKL G ++I+ + G GYV+ Sbjct: 183 VWSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREVPT 237 Query: 228 ETCE 231 E Sbjct: 238 PPAE 241 >gi|145593524|ref|YP_001157821.1| response regulator receiver [Salinispora tropica CNB-440] gi|145302861|gb|ABP53443.1| response regulator receiver [Salinispora tropica CNB-440] Length = 229 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+L+++DD ALA + ++L+SE F +V D GE + + D ++LDL L + G Sbjct: 4 RVLVVDDDPALAEMLGIVLRSEGFLPSFVAD-GERALAAFRENRPDIVLLDLMLPGMSGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R++R + P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 63 DVARSIR-GESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGE 121 Query: 121 GHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A L+ G +++++ A TV G + LT E+ ++ L+ + T+E+ L Sbjct: 122 DAAPELLTIGPPGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + ++++V + +LR K+ I TV G GY Sbjct: 182 QVWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGY 224 >gi|227543768|ref|ZP_03973817.1| two component response regulator [Lactobacillus reuteri CF48-3A] gi|300908835|ref|ZP_07126298.1| DNA-binding response regulator [Lactobacillus reuteri SD2112] gi|77745289|gb|ABB02545.1| response regulator [Lactobacillus reuteri] gi|227186267|gb|EEI66338.1| two component response regulator [Lactobacillus reuteri CF48-3A] gi|300894242|gb|EFK87600.1| DNA-binding response regulator [Lactobacillus reuteri SD2112] Length = 221 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 65/201 (32%), Positives = 120/201 (59%), Gaps = 1/201 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED++ L+H + + + + V + + G++ +E K +D IILD+ + G Sbjct: 1 MRILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R T + +L+ M +DKV GL +GADDY++KPF+ +EL+AR+R+ RR Sbjct: 61 EALKEIRATGNRTYIMMLTAMGEEDDKVTGLDAGADDYLTKPFSLKELLARLRSRQRRDD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ GDL++N + +++E + I LT +E ++++ L N L+ +NH++D Sbjct: 121 SYQVDVLEFGDLTLNGNDQSLESH-NSISLTNRENRLLQYFILNANKELSANELINHVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKL 201 + + + + + IC LR+KL Sbjct: 180 ENETADQEDLWINICYLRQKL 200 >gi|87119136|ref|ZP_01075034.1| DNA-binding response regulator ColR, putative [Marinomonas sp. MED121] gi|86165527|gb|EAQ66794.1| DNA-binding response regulator ColR, putative [Marinomonas sp. MED121] Length = 237 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 2/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA +I LK N G + L + Y+FD II D+ + + G + Sbjct: 12 VLIVEDNTALAANIIESLKEFNIECDYAKNGIQALSLAQLYQFDVIISDILMPAMDGITI 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR ++TP+ +L+ + IEDKV G GADDY+ KPF ELVARIR++ + R + Sbjct: 72 CRKLRALDVTTPILLLTALGHIEDKVTGFSVGADDYLVKPFEMLELVARIRSLSEKQRIN 131 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 L+V DL V+L TV G I L+ ++++ L + + ++KE HL+ Sbjct: 132 PSRLVVE-DLQVDLKTHTVSRAGKPIFLSPTCWELLVFLMRKSPSLVSKEQIEQHLWRHN 190 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 PE + V + +LR+ + + + T+ G+G VL Sbjct: 191 GTPETDVTKVHLYRLRQAIDKSFDCP-LLHTIRGQGVVL 228 >gi|323356976|ref|YP_004223372.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323273347|dbj|BAJ73492.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 226 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E F+ G ++ + D I+LDL L + G E Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGFDTVFCADGAQAVDAWRTERPDLILLDLMLPGVDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R A+ P+ +L+ + D V+GL+SGADDYI KPFN +ELVARIR +R + Sbjct: 64 ICTRVR-AESGVPIIMLTARTDTADVVKGLESGADDYIMKPFNPKELVARIRTRLRPVQV 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL V++ A V + I LT E++++ L+ + ++EM L ++ Sbjct: 123 PVDETLRIGDLVVDVAAHEVRRGDNPIALTPLEFELLVALAEKPQQVFSREMLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++++V + +LR K+ + TV G GY Sbjct: 183 HYKADTRLVNVHVQRLRAKIEADPDNPRIVTTVRGVGY 220 >gi|313888461|ref|ZP_07822128.1| response regulator receiver domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845490|gb|EFR32884.1| response regulator receiver domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 232 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 10/223 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ EDDK +A SI + LK+ENF ++ + G + +E+ K + D II+DL + + G E Sbjct: 6 ILIAEDDKEIARSIGIYLKNENFEIFYAEDGLEALEIFKNEKIDLIIMDLMMPKLSGEEA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ ILS S DK+ GL GADDY+ KPFN EL+AR+++ +RR + Sbjct: 66 IIKLREVSF-VPIIILSAKSEDTDKIFGLNIGADDYVQKPFNPMELIARVKSNLRRFYAY 124 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ I G + ++L K V+ + LT E++++ELL N + E + Sbjct: 125 DLKKDRNFIEIGSIKLDLSQKIAYVEDKPVALTSIEFKILELLMKNPNRVFSIEEIYESV 184 Query: 179 YDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +EP E K + V I ++R+K+ Y++ WG GY Sbjct: 185 W---NEPAMEAKTVTVHIRRIREKIEVNPKKPMYLKVQWGLGY 224 >gi|304309688|ref|YP_003809286.1| Putative heavy metal response regulator precursor [gamma proteobacterium HdN1] gi|301795421|emb|CBL43619.1| Putative heavy metal response regulator precursor [gamma proteobacterium HdN1] Length = 224 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYE-FDAIILDLGLTDI 57 M+ILL+ED+ ++ L F TD +DGI +E +D IILD+ L Sbjct: 1 MKILLVEDEPKTGDYLKQGLCEAGFP---TDWVQDGISGSHQALHETYDLIILDVMLPGR 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EVL+ +R A PV L+ + D+VRGL++GADDY+ KPF EL+ARIR ++R Sbjct: 58 SGWEVLQDIRSAGKDMPVLFLTARDEVNDRVRGLEAGADDYLVKPFAFAELLARIRTLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R R ++ DL ++L + RI LT +E+ ++ LL R+ L + + + Sbjct: 118 RERSREPDVLNVADLELDLRTRRATRSHQRIELTAREFALLALLMRRRGEILPRALIASQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D E + +++V + +LR K+ + + I TV G GY L E Sbjct: 178 VWDMNFESDTNVVEVAVRRLRAKIDDPFEPR-LIHTVRGMGYTLEEK 223 >gi|152971957|ref|YP_001337066.1| DNA-binding transcriptional regulator QseB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956806|gb|ABR78836.1| putative 2-component transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 219 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK + I+ L F++ G +G +DA ILDL L I G Sbjct: 1 MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWRDKGRHEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S + G + ++ + T + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE ++V + LR+KL G ++I TV G GY L Sbjct: 181 WDDEVSSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTL 216 >gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 223 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+DD + ++ L E + V V + G G+ + K + +ILD+ L + G+E Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + R TP+ ILS +E KV+GL GADDY+ KPF EEL+AR++A++RR R Sbjct: 64 ICQRFRKDNF-TPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR-RI 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A +I DL ++L+A+ V G+ + LT +E+ ++ N LT+E ++ ++ Sbjct: 122 TANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++V+I LR+K+ + G I TV G GYVL+E Sbjct: 182 DFTGGSNVLEVYINMLRQKIEDY--GSRIIHTVRGVGYVLKEQG 223 >gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 241 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 127/228 (55%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ ++V G + + L + D +ILD+ L D+ GF Sbjct: 11 RLLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + I P+ L+ + DKV GLQ+G DDY++KPF EE+VARI AI+RR++ Sbjct: 71 VTRKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKR 130 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A Q L+ DL ++ + V G I L+ E++++ L + + ++K L+H++ Sbjct: 131 SAVEQPLLRVADLELDDNLYEVHRGGRLIDLSPTEFKLLRYLMVNEGRVVSKTQILDHVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLS----NAAGGKNYIETVWGRGYVLRE 223 + E + I++ +I LR+KL + + I+T G GY+LR+ Sbjct: 191 EYDWEGDAAIVESYISYLRRKLDAPDETGSIPPSLIQTRRGVGYLLRD 238 >gi|218550275|ref|YP_002384066.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii ATCC 35469] gi|218357816|emb|CAQ90460.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia fergusonii ATCC 35469] Length = 219 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + I+ L F+V G +G E +DAIILDL L I G Sbjct: 1 MRILLIEDDRLIGDGIKTGLSKMGFSVDWFTGGREGKEALYSAPYDAIILDLTLPGIDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G + ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V I LR+KL G +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHIHHLRRKL-----GSGFIRTVHGIGYTLGE 218 >gi|289705109|ref|ZP_06501513.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558137|gb|EFD51424.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 226 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ALA I ++L+++ F G + D ++LDL L I G E Sbjct: 5 KILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLMLPGIDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ S D VRGL+SGADDY+ KPF ELVAR+RA +R Sbjct: 65 VCRLIR-DESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL +++ V G I LT E+ ++ L+ R T+EM L ++ Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRAGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + + ++++V + +LR K+ + TV G GY Sbjct: 184 RHQADTRLVNVHVQRLRSKVEPDPENPCVVLTVRGVGY 221 >gi|238896533|ref|YP_002921273.1| DNA-binding transcriptional regulator QseB [Klebsiella pneumoniae NTUH-K2044] gi|330008924|ref|ZP_08306330.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3] gi|238548855|dbj|BAH65206.1| putative 2-component transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328535024|gb|EGF61548.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3] Length = 219 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK + I+ L F++ G +G +DA ILDL L I G Sbjct: 1 MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S + G + ++ + T + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE ++V + LR+KL G ++I TV G GY L Sbjct: 181 WDDEVSSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTL 216 >gi|149926314|ref|ZP_01914576.1| probable two-component response regulator transcription regulator protein [Limnobacter sp. MED105] gi|149825132|gb|EDM84344.1| probable two-component response regulator transcription regulator protein [Limnobacter sp. MED105] Length = 241 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 13/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--------YEFDAIILDL 52 M++L++EDD ++ +E LK+E + V G+ + K +E +ILD+ Sbjct: 1 MKVLIVEDDARVSSFLERGLKAEGYRPQVAHNANTGLSMAKALQKEVRENFESAVVILDV 60 Query: 53 GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 L D G +V + LR + PV +L+ ++S+ED+V GL+ GADDY+ KPF +E++AR+ Sbjct: 61 MLPDGSGLDVCQTLRAEGFALPVLMLTALNSVEDRVAGLRMGADDYLGKPFAFDEILARL 120 Query: 113 RAIVRR----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 A+ RR + A+ + DL+++L+ + G I LT KE ++ELL Sbjct: 121 EALGRRVGNAAPKQARKNLEVADLNLDLEKMRLSRAGREIQLTAKELALVELLMSAPGRL 180 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E L++++ ++P ++DV+I +LR K+ + G + I T G GY L Sbjct: 181 FSRERILSNVWGVNEDPLTNVVDVYIRRLRTKI-DLEGLQPLIHTQRGLGYRL 232 >gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638] gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 238 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 4/230 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G + L + ++DA+ILDL L + G E Sbjct: 6 QILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKALLLLEQAQWDAVILDLMLPHVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R P+ I+S SS D++ GL++GADDY++KPF+ +EL+ARI+A+ RR + Sbjct: 66 ICRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQA 125 Query: 121 -GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G AQ+ I L+++ ++V++ G + LT +E++++ + ++ L Sbjct: 126 MGLAQTNGQIYAHGLALDPLLRSVQLNGKEVVLTPREFELLYFFARHPGEVFSRLALLEQ 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + E ++ I +LR K+ A I TVWG+GY E D Sbjct: 186 VWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKFAELTYD 235 >gi|315646887|ref|ZP_07900002.1| two-component response regulator [Paenibacillus vortex V453] gi|315277817|gb|EFU41141.1| two-component response regulator [Paenibacillus vortex V453] Length = 218 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 7/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD +++ I++ L N+ G +E + FD I+LD+ + I GFE Sbjct: 4 KILIVEDDIHISNIIKMNLNIVNYATTEVYDGLAALEAIERETFDLILLDVMIPKIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ ++ +I PV L+ +S+ DKV GL+ GADDY+ KPF EL+ARI ++RR G Sbjct: 64 LMSKIQRHRI--PVIFLTAKNSVYDKVTGLKLGADDYMVKPFEAIELLARIETVLRRY-G 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +S++ D+ VN+D + V + + LT KEY ++ +L KN L++E FL+ ++ G Sbjct: 121 KEESMMQFQDVQVNMDKREVTIHSQPVELTPKEYDLLVVLLKNKNIALSREQFLDKVWGG 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +D+ I LRKKL I+T++ GY L + Sbjct: 181 DYFGETRTVDMHIKSLRKKLHLQEN----IKTIYKIGYRLED 218 >gi|290475831|ref|YP_003468723.1| response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289175156|emb|CBJ81959.1| response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 227 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ L H + + L+ V + ++ K D I+DLGL G Sbjct: 1 MRILIIEDEAILRHHLTVQLRELGHQVDAAENTKEADYYLKENHPDIAIVDLGLPGEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R R +++ P+ IL+ S ++KV L +GADDY++KPF EE+ ARI+A++RR Sbjct: 61 SMIRRWRSDQVNLPILILTVHDSWQEKVTVLNAGADDYVTKPFRLEEINARIQALMRRHS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L+ ++L K V + I LT EY +IE L ++KE + LY Sbjct: 121 GLASQLVELSPFLIDLSRKEFSVNKNSIKLTAFEYTIIETLMRNNGKVVSKESLMRQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E IDV + +LRKK+SN + I TV G+GY Sbjct: 181 DAELRESHTIDVLMGRLRKKISNEWSDE-VIVTVRGQGY 218 >gi|255527459|ref|ZP_05394330.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186052|ref|ZP_06854457.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255508839|gb|EET85208.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049320|gb|EFG88749.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 232 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 137/229 (59%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I +L+++ +NV G + + + ++ I+LDL + I G E Sbjct: 6 KILVVEDENDINKLICSILENKGYNVIPAFSGTEALMRVENEKWHMILLDLMIPGIDGEE 65 Query: 62 VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 V+ L++ +I+ P+ ++S +S + K+ L+ GADD+I KPF+ +E+VAR+++ +RR Sbjct: 66 VI--LKIREITKAPIIVVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVKSNLRRYL 123 Query: 119 --SRG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S G +++V D+S+N+++K V+V I LT +E+ ++ELL + +K Sbjct: 124 EFSTGGEKKNNILVYKDISLNIESKEVKVGQTLITLTAREFDILELLLKNPSKVYSKSNI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ E I+V + +LR KL NA GK+YIETVWG GY LR+ Sbjct: 184 FESIWEEEFLGEYNTINVHVSRLRTKLCNAGDGKDYIETVWGMGYRLRK 232 >gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str. MC2 155] gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str. MC2 155] Length = 239 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 +LR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RRS R Sbjct: 74 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 133 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G ++ + D+ ++ D V G + L+ E+ ++ + T L+K L+H Sbjct: 134 GVEETRNARLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 237 >gi|83745711|ref|ZP_00942769.1| Hypothetical Protein RRSL_04779 [Ralstonia solanacearum UW551] gi|83727788|gb|EAP74908.1| Hypothetical Protein RRSL_04779 [Ralstonia solanacearum UW551] Length = 288 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 19/244 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE------------FDA 47 MR+LL+EDD + ++ L+ + F + +V D GE ++ FD Sbjct: 43 MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRD-GEAAVQAVGAPGAAAAAAESSASMFDL 101 Query: 48 IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107 ++LDLGL G +V+ +R I+ P+ IL+ ++ D+V GL +GADDY+ KPF+ +E Sbjct: 102 MLLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQE 161 Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 L AR+ A++RR G A L+ GD+ +N + V G + L+G+E+ ++ L R Sbjct: 162 LAARMHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFAVLHALLSRPGK 221 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++LY +E ++V+I LRKKL G ++I+ + G GYV+ Sbjct: 222 VWSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREVPT 276 Query: 228 ETCE 231 E Sbjct: 277 PPAE 280 >gi|317132922|ref|YP_004092236.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470901|gb|ADU27505.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 236 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60 IL++ED++A+ + + LK + V GE ++L + + E +LD+ L I GF Sbjct: 5 ILVVEDEQAIREFVIINLKRAGYEVLEAGTGEAALKLYESHGNEIRIALLDIMLPGIDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + + +L+ + DKV GL GADDY++KPF+ ELVAR+ A+ RR Sbjct: 65 AVCRELRQKSKTLGIIMLTARTQEMDKVGGLMIGADDYVTKPFSPSELVARVDALYRRLN 124 Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A ++ IV+GD +N ++T +G I LT EYQ+++ +T L++ L Sbjct: 125 LEAGEKEDENGIVSGDFVLNTKSRTFYRRGQPIELTQMEYQIMKYFLENPDTALSRGDIL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 NH++ E+KI+DV I +LR K+ +I TVWG GY Sbjct: 185 NHVWGEDYFGELKIVDVNIRRLRMKVEEDPSAPRHILTVWGFGY 228 >gi|218232340|ref|YP_002366694.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229178405|ref|ZP_04305773.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|218160297|gb|ACK60289.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228605043|gb|EEK62496.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|326939716|gb|AEA15612.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 3 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 63 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESMR 229 >gi|300857169|ref|YP_003782153.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300437284|gb|ADK17051.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 129/220 (58%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +++ + L+ E + VY + G +EL EF IILDL L DI G E Sbjct: 3 KVLIVEDEEKVSNIQKAYLEKEGYEVYTSTTGLKALELFDSIEFSLIILDLMLPDIQGEE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + +++ S++ED++ GL +GAD+Y+ KPF+ ELVAR+ ++ RR Sbjct: 63 ICKIIR-DKSDVHIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLGA 121 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S++ G++ + D++ ++V+G I LT E+ ++ +L++ K LT+E ++ ++ Sbjct: 122 NNISVLSLDNGNIQIYKDSRIIKVKGQEISLTPNEFDILYVLAINKGKVLTREQLIDRVF 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + +DV I +RKK+ + YI TV GY Sbjct: 182 GMDFEGFDRTVDVHIKNIRKKIEEDSKSPKYILTVTRLGY 221 >gi|212212388|ref|YP_002303324.1| QseB [Coxiella burnetii CbuG_Q212] gi|212010798|gb|ACJ18179.1| QseB [Coxiella burnetii CbuG_Q212] Length = 232 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-FDAIILDLGLTDIP 58 MR+LL+EDD+ L I LK + +V D L +E FD IILDLGL Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +VL+ +R TPV IL+ +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDTGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ A+ +I GD++++ + V ++ + ++ +E+ +++ L +++E L Sbjct: 130 SKERAKPIISHGDITLDPASHVVTLKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 Y + + ++V I LRK+ G I T+ G GY++ + ++ Sbjct: 190 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSE 232 >gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50] gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50] Length = 228 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + ++ L+ ++ V V G + E K +D ++LD+ + G E Sbjct: 3 KVLVVDDEKLIVKGLKFSLEQDDMEVDVAYDGGEAFEKIKNNSYDIVLLDIMIPVYTGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RRS Sbjct: 63 VCQMVREFS-NVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSGK 121 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A+ +++ + V LD++ V V G ++LT KE+ ++ELL N ++ L+ Sbjct: 122 KAEPVKPVNIMEINGMKVELDSRRVFVHGKELNLTAKEFDLLELLMAHPNKVYSRNELLD 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV + +LR+K+ + G YI T WG GY + Sbjct: 182 TIWGSTYPGDARTVDVHVRRLREKIEDNPGEPVYIHTKWGVGYYFK 227 >gi|227329683|ref|ZP_03833707.1| DNA-binding transcriptional regulator CpxR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 232 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 22/234 (9%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV V GE +++ D ++LD+ + G + Sbjct: 3 KILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQILD-NTIDLLLLDVMMPKKNGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRKNT 167 Q GD S A T+EV G R++ LTG E+ ++ LL+ R Sbjct: 121 TDQQ--QAGDNS----APTLEVDGLRLNPGRQEASFDDIVLDLTGTEFTLLYLLAQRLGQ 174 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++E + R P + ID+ I LR+KL G + +T+ GRGY++ Sbjct: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLM 228 >gi|33594405|ref|NP_882049.1| response regulator protein [Bordetella pertussis Tohama I] gi|33597124|ref|NP_884767.1| response regulator protein [Bordetella parapertussis 12822] gi|33600968|ref|NP_888528.1| response regulator protein [Bordetella bronchiseptica RB50] gi|5777378|emb|CAB53386.1| transcriptional regulatory protein, putative [Bordetella pertussis] gi|33564480|emb|CAE43793.1| response regulator protein [Bordetella pertussis Tohama I] gi|33566575|emb|CAE37832.1| response regulator protein [Bordetella parapertussis] gi|33575403|emb|CAE32480.1| response regulator protein [Bordetella bronchiseptica RB50] gi|332383816|gb|AEE68663.1| response regulator protein [Bordetella pertussis CS] Length = 223 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD L H+++ L + + V G+ + +D ++LDL L + G Sbjct: 1 MRVLVIEDDTTLGHALQEFLADQGYAVDWLTEGDKVLGALAGQPYDLLLLDLNLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR PV IL+ ++D+V GL +GADDY++KPF+ EL AR+RA+ RR Sbjct: 61 DVLRQLRQDGNQVPVLILTARDGLDDRVAGLDAGADDYVTKPFDLPELAARVRALGRRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ I G L + + V G R+ L+ +E ++E+L R +TK +N L Sbjct: 121 GQAQPQIEVGPLVFDTVGREVRANGTRLALSVRELSVLEMLMARSGRVVTKRQIVNSLSA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V++ +LRK+L G I+TV G GY+L Sbjct: 181 WDADFSENAVEVYVYRLRKRLE---GSGASIQTVRGFGYML 218 >gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 235 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V G + ++ + ++ D +LD+ L D+ GF Sbjct: 9 RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V R LR A PV L+ EDK+ GL G DDY++KPF+ +E+VARIRA++RR S Sbjct: 69 VTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTAS 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ DL ++ DA V G + L+ E++++ L + N L+K L+H++ Sbjct: 129 LDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I++ +I LR+K+ + G + I T G GY+LR K Sbjct: 189 EYDFNGDASIVESYISYLRRKI-DVGGREKMIHTKRGVGYMLRTADK 234 >gi|253686544|ref|YP_003015734.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753122|gb|ACT11198.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 232 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 22/234 (9%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV V GE +++ D ++LD+ + G + Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQVLD-NTIDLLLLDVMMPKKNGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRKNT 167 Q GD S A T+EV G R++ LTG E+ ++ LL+ R Sbjct: 121 TDQQ--QAGDNS----APTLEVDGLRLNPGRQEASFDDIVLDLTGTEFTLLYLLAQRLGQ 174 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++E + R P + ID+ I LR+KL G + +T+ GRGY++ Sbjct: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLM 228 >gi|145594141|ref|YP_001158438.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303478|gb|ABP54060.1| response regulator receiver [Salinispora tropica CNB-440] Length = 219 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 130/221 (58%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA ++ L++E F V V G G++ + ++DA++LD+ L + G+ Sbjct: 1 MRLLVVEDEARLAAALHRGLQAEGFVVDVASTGPAGLDAARHGDYDAMVLDVMLPGLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR + PV +LS D+ GL GADDY++KPF+ L+AR+RA++RR Sbjct: 61 EVVRRLRAERRWLPVLMLSAKDGEYDQADGLDCGADDYLTKPFSYVVLLARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ + V G + LT +EY +++ L R T ++K L+H++D Sbjct: 121 PERPAVLTVGDLRLDPARRRVTRDGAEVALTAREYALLDYLMRRPGTVVSKIELLDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++V++ LR+KL G++ +ETV G GY L Sbjct: 181 ANIETAPNAVEVYVGYLRRKL-----GRDRLETVRGAGYRL 216 >gi|87121223|ref|ZP_01077113.1| two-component system regulatory protein [Marinomonas sp. MED121] gi|86163380|gb|EAQ64655.1| two-component system regulatory protein [Marinomonas sp. MED121] Length = 221 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 129/220 (58%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED + L +I L S + GE E+ K+ D IILDL L + G Sbjct: 1 MRVLVVEDTQVLGQAICDRLASLGHGADLVTNGEQANEILKYQTLDLIILDLNLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR TPV IL+ ++D+V L +GADDY++KPFN EL AR RA++RR Sbjct: 61 QILKQLRARANETPVLILTARDQMDDRVILLDAGADDYLTKPFNFRELEARCRALLRRHH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+A ++ G+L++N DA+ V V+G +T +E++++E+ L+K+ HL++ Sbjct: 121 GYAANVTEHGNLTINRDARQVMVKGEIQSITNREFRLLEIFLGHLGRVLSKDEITEHLFN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + P I++++ +LRKKL +++ I T+ G GYV Sbjct: 181 FDETPGPNAIELYVGRLRKKLVDSS---LTISTLRGLGYV 217 >gi|323183609|gb|EFZ69006.1| transcriptional regulatory protein qseB [Escherichia coli 1357] Length = 219 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|301053529|ref|YP_003791740.1| alkaline phosphatase synthesis response regulator [Bacillus anthracis CI] gi|300375698|gb|ADK04602.1| alkaline phosphatase synthesis response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 4 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 64 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 124 DEKTHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|229175383|ref|ZP_04302898.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3] gi|228608215|gb|EEK65522.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3] Length = 229 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ +++ IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEISFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|126702209|gb|ABO26808.1| PmrA [Legionella feeleii] Length = 222 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 70/200 (35%), Positives = 118/200 (59%), Gaps = 8/200 (4%) Query: 28 YVTDL---GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84 Y+ D GE K F+ IILDLGL + G L+A+R TPV IL+ S+ Sbjct: 25 YIVDWLKDGEAARAAVKSESFELIILDLGLPRLSGLAFLQAIRHDDNRTPVIILTARESV 84 Query: 85 EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQ 144 ED+V+GL +GADDY++KPF+ EL AR+RA+VRRS+G A +++ +++++ A +V V Sbjct: 85 EDRVKGLDAGADDYMTKPFDLNELSARVRALVRRSQGRADAVLQYRNITLDPAAHSVYVD 144 Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 +++ +E+ +++ L L++E + +Y ++ + ++V I LRKKL+ Sbjct: 145 DVIVNVPRREFSLLQKLLENSGQVLSREQLMQSIYGWDEDVDSNALEVHIHNLRKKLN-- 202 Query: 205 AGGKNYIETVWGRGYVLREN 224 N+I T+ G GY++ +N Sbjct: 203 ---ANFIRTIRGVGYMVEKN 219 >gi|113869661|ref|YP_728150.1| response regulator [Ralstonia eutropha H16] gi|113528437|emb|CAJ94782.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 224 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+ED+ LA + L+ F + +V D G + E+DA++LDL L G Sbjct: 1 MRILLVEDEIELARWVARALEQGGFVIEHVAD-GLQAEARLQAEEYDAVLLDLRLPGKDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+++R TPV IL+ +++++VRGL GADDY+ KPF EL AR+ A++RRS Sbjct: 60 LAVLKSMRARDDRTPVLILTAQDTLDERVRGLNLGADDYLPKPFAIAELEARLLALIRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 RG A + G L + + ++ + G + LT +E ++ L R LTK L+ ++ Sbjct: 120 RGRAHPRLQCGTLVFDGETRSFTLDGAPLALTPRESTLLGALLARSGQPLTKAQLLDKVF 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I+V + +LRKKL AG I T+ G GY+L A Sbjct: 180 SLDADVSPDAIEVLVYRLRKKL---AGHGVTIVTLRGFGYLLEPEA 222 >gi|325528239|gb|EGD05411.1| two-component regulatory system response regulator protein [Burkholderia sp. TJI49] Length = 231 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + ++ L E + V GEDG +++D ++LD+ L + GF Sbjct: 1 MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ ++D+VRGL+ GADDY++KPF+ EL+ R+RA+ RR+R Sbjct: 61 GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT +E+Q++ +L+ R L+K ++D Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDE 228 + +++ I +LR KL K + T+ G GYVL RE+ E Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVLEAREDGDTE 228 >gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300] gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300] Length = 235 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 129/234 (55%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +Q L + GDL + DA + G + LT +E++++ L+ +T Sbjct: 122 VSVDSQESDEKKSQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|312962223|ref|ZP_07776715.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311283560|gb|EFQ62149.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 226 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+ EDD+ +A I L ++ F V + K FD ++LDLGL D G Sbjct: 1 MHVLVCEDDELIASGIVAGLGAQGFTVERVATAAAARAMLKAATFDIMVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR + PV IL+ S+ ++V GLQ+GADDY+ KPF+ EL AR++ ++RR Sbjct: 61 KLLQQLRSQGLEIPVLILTARDSVTNRVDGLQAGADDYLLKPFDLRELAARLQTLLRRMA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +LI G LS + ++ + G + L+ +E +++ L K L+ E + +Y Sbjct: 121 GRSVNLIEHGRLSYDPSSRETLLGGQPVDLSRREQALLQALLHNKGRVLSSEQLKDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL N +ETV G GY L Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216 >gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 252 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 129/234 (55%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 20 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 80 VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 138 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +Q L + GDL + DA + G + LT +E++++ L+ +T Sbjct: 139 VSVDSQESDEKKSQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 197 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 198 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251 >gi|310824267|ref|YP_003956625.1| winged helix family two component transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309397339|gb|ADO74798.1| Two component transcriptional regulator, winged helix family [Stigmatella aurantiaca DW4/3-1] Length = 241 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+EDD+ LA L+ V + G +G+ + +D ++LDL L G Sbjct: 13 IQVLLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLPGRDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +++ D+V GL++GADDY+ KP++ EL+ARIRA VRR+R Sbjct: 73 EVCRELRT-RSDVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRAR 131 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G+A Q L V G L ++ + T + G + LT E+ ++ +L+ R L++E L+ Sbjct: 132 GNAGPSLQPLNV-GRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLD 190 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + DE + IDV I +LR+KL ++TV G GY+L Sbjct: 191 LIKGSADEVFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 235 >gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC 15579] gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC 15579] Length = 229 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + + V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 VCQKIR-NKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I G L+++L ++ V + I T KE+ ++ELL+L +KE + Sbjct: 122 VPLNNKSKISFGKLNLDLSSRKVYYEEEEIIFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + + I K+R K + N+I TVWG GY +N Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRSASLNHIATVWGVGYRWEKN 227 >gi|217979526|ref|YP_002363673.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217504902|gb|ACK52311.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 236 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 121/220 (55%), Gaps = 1/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ +A +IE L++ + EDG E + + II D L + + Sbjct: 15 ILIVEDESFVAKAIEDELRANGYESVAVSTAEDGFEAARALDPMLIIADRMLAGVDSLSI 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR PV +SG++++++++R L++G DDY++KPF EL AR+ A++RRS+ Sbjct: 75 IERLRRDDAHLPVLFVSGLTAVDERIRALKAGGDDYLTKPFALGELAARVDALLRRSQSA 134 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + +V G L ++ ++ + I L E++++E + TL++ M L ++ R Sbjct: 135 QDTALVVGPLMLDRISRMAQRGARAIALLPAEFKLLEYMMRHAGQTLSRAMLLEDVWGYR 194 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P +IDV I KLR+K+ +AAG I +V G G+ L+ Sbjct: 195 SLPNTNLIDVHIGKLRRKI-DAAGETPLIHSVRGAGFTLQ 233 >gi|73537794|ref|YP_298161.1| heavy metal response regulator [Ralstonia eutropha JMP134] gi|72121131|gb|AAZ63317.1| Heavy metal response regulator [Ralstonia eutropha JMP134] Length = 229 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + L F V + G DG+ + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKAGDYLLKGLTESGFVVDLARDGVDGLAHAREQPYDLIVLDVMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + TPV L+ ++D+++GL+ GADDY+ KPF ELV RIR I+RR Sbjct: 61 SVLRELRRER-DTPVLFLTARDELQDRLKGLELGADDYMVKPFAFAELVMRIRTILRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I DL ++ + V G +I LT KE+ ++ LL+ R+ L++ + + ++D Sbjct: 120 LRESEFIEVADLQIDAIRRRVSRSGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV I +LR K+ + K I T G GYVL Sbjct: 180 VNFDSNTNVVDVSIRRLRAKVDDPFDHK-LIHTRRGMGYVL 219 >gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 226 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + +L E F V V D G D I D ++LDL L G E Sbjct: 3 RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + S PV +L+ + DKV GL+ GADDY++KP++ ELVAR+RA++RR +G Sbjct: 63 VCRQLR-QRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR-QG 120 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + LI + G + ++++ V V G ++ L KE++++E+L LT+ ++ Sbjct: 121 EPEELISSTVQAGPVRMDIERHVVSVGGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ Y+ TV G GY Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRGKIEPDPSAPRYLVTVRGLGY 222 >gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 224 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+I+D+ + H IE+ L + F + + G + + + D +ILD+ + GF Sbjct: 2 LNILIIDDEADMRHLIEMYLGNSGFTCFSAESGFEAYGILENNVMDLVILDIMMPGEDGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV +R K + P+ LS DKV+ LQ G DDYI KPF+ EL+AR+ A++RR+ Sbjct: 62 EVCSRIR-GKSNVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVLRRTG 120 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + I G ++++ A+ V V G ++ LT KEY+++ KN L++E L ++ Sbjct: 121 GLKSDMDSIQIGKITIDKKARKVTVAGIQVTLTLKEYELLLFFIEHKNQALSREQLLEYI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ +D I LR KL G +YI+TVWG GY Sbjct: 181 WGIDYTGSLRTVDTHIKTLRMKL----GVGDYIQTVWGVGY 217 >gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 226 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + D I+LDL L + G E Sbjct: 3 RLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRRGADLILLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR A+ + PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRTLR-ARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + + G + ++++ V V G+++ L KE++++E+ LT+ ++ + Sbjct: 122 TEEVSDTTLEVGRVRMDVERHVVTVDGNQVSLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGY 222 >gi|299821998|ref|ZP_07053885.1| response regulator [Listeria grayi DSM 20601] gi|299816626|gb|EFI83863.1| response regulator [Listeria grayi DSM 20601] Length = 230 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DDK + ++L L++E + +Y G++ E+ + +ILD+ + ++ G EV Sbjct: 4 ILIADDDKEIVDLVKLYLQNEGYQIYQAYNGKEAWEIVQDKMPSLVILDVMMPEMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R I TP+ +LS + DK+ GL +GADDY+ KPFN EL R++ I+RR + Sbjct: 64 CKKMRNENILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKVILRRIQNI 123 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A S + + G + ++ D V V +HLT E+ ++ LL+ + E Sbjct: 124 QANSSVDTAKTIIGPIVIDKDQHIVTVNEKELHLTTSEFDILYLLASEPGRVFSSEYIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K + V I LR KL A G+N I+T+WG GY Sbjct: 184 KIWQEKALGASKTVMVHISNLRDKLRVAMAGENVIKTIWGVGY 226 >gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] Length = 243 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L + V G + IE+ + + D IILD+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIERTQPDLIILDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+R Sbjct: 69 TRRIRQEGIDAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 VEDDPIIRVGDLEINEDSHDVTRAGKPIDLSPTEYKLLCYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLR 222 + I++ +I LRKK+ + G + IET G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKVDDITVEDEDGTTHKVQPLIETKRGIGYMIR 239 >gi|182679197|ref|YP_001833343.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635080|gb|ACB95854.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 227 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 129/230 (56%), Gaps = 11/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI----ELCKFYEFDAIILDLGLTD 56 MRIL++EDD + + M+K+ ++ D DG+ + C+ +D +I+D L Sbjct: 1 MRILIVEDD---PEASQYMVKAFREAGHLADHAGDGLAGYQKACE-ENYDVLIVDRMLPK 56 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G ++ LR KI TPV ILS + ++D+V+GL+SG DDY+ KP+ EL+AR+ A+ Sbjct: 57 LDGLSLIGGLRAQKIETPVLILSALGQVDDRVKGLRSGGDDYLPKPYAFSELLARVEALA 116 Query: 117 RR-SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RR G A+ I G L ++ A + G I L +E++++E L +T+ M Sbjct: 117 RRKPPGTAEETIYRIGGLELDRLAHKLTRDGKEIILQPREFRLLEYLMKHAGQVVTRTML 176 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L H++D +P+ +IDV I +LR K+ ++T+ G GY++R++ Sbjct: 177 LEHVWDYHFDPQTNVIDVHISRLRSKIDKGF-DPPLLQTIRGIGYMIRDS 225 >gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222] gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222] Length = 231 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ ++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RR Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ + +I + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGY 227 >gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773] Length = 235 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 131/234 (55%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++V G++ + + + D ++LD L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALTMFSDEKPDLVLLDQMLPEIDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R +K PV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R + Sbjct: 63 VLRQIR-SKSEIPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121 Query: 122 ---HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 H+ +V GDL+++ A V G I LT +E++++ L+ +T+E Sbjct: 122 VAQHSDDTVVNTEDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ +V+ +DV + +LR+K+ + N++ T G GY LR A+ Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPEAE 235 >gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 232 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ L+ + V + G + +E + + +ILD+ + ++ G Sbjct: 1 MKILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R++VRR+ Sbjct: 61 EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120 Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +S + DL ++ D + V G I LT E+ +++LL L++ Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180 Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ G D P ++V+I LRKK + G I TV G GYVLRE+ Sbjct: 181 ILEEVW-GYDFPTSGNALEVYIGYLRKK-TEGEGDARLIHTVRGVGYVLRES 230 >gi|21224124|ref|NP_629903.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|256784797|ref|ZP_05523228.1| two-component system regulator [Streptomyces lividans TK24] gi|289768685|ref|ZP_06528063.1| two-component system regulator [Streptomyces lividans TK24] gi|2687343|emb|CAA15884.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|289698884|gb|EFD66313.1| two-component system regulator [Streptomyces lividans TK24] Length = 228 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 12/228 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58 MR+LL+EDD +A ++ +L F+V GE+ ++ + + F ++LDLGL D Sbjct: 1 MRLLLVEDDNHVAAALSAILARHGFDVTHARSGEEALQALVPEVDGFGVVLLDLGLPDQD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+EV +R + STPV +++ + + ++ GL GADDY+ KP++ EL+ARI A+ RR Sbjct: 61 GYEVCGKIR-KRTSTPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRR 119 Query: 119 S-----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G ++++ G + + L + V V G + LT KE+ ++ LL+ R +E Sbjct: 120 TAHEDATGSTETVVRLGAVRIELPTRQVSVDGSVVQLTRKEFDLLALLAQRPGVVFRREQ 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ E + ++V + LR KL A IETV G GY L Sbjct: 180 IISEVWRTSWEGTGRTLEVHVASLRSKLHMPA----LIETVRGVGYRL 223 >gi|315635865|ref|ZP_07891127.1| two component response regulator [Arcobacter butzleri JV22] gi|315479844|gb|EFU70515.1| two component response regulator [Arcobacter butzleri JV22] Length = 225 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD + + ++ L+ E + V + G++G+ L +D I+LD+ L G Sbjct: 4 MKILIIEDDLKIINFLKKGLEEECYIVDFSTNGDEGLYLASINTYDLILLDIMLPIKDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV ++LR + I TP+ +L+ SIEDK++GL GA+DY++KPF+ EL+ARIR +R + Sbjct: 64 EVCKSLRSSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRIT- 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + DL ++L KT I LT KE+ ++E L KN L++ L Sbjct: 123 TTTQTKLSIADLELDLLNKTASRANQNIVLTAKEFALLEYLIKNKNRVLSETTINEALSS 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D I++V+I +LR K+ K I+TV G G+ + E+ Sbjct: 183 FEDSNISNIVNVYIYRLRNKIDKNFENK-LIKTVRGIGFKISED 225 >gi|262042303|ref|ZP_06015468.1| two-component response regulator QseB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040367|gb|EEW41473.1| two-component response regulator QseB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 219 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK + I+ L F++ G +G +DA ILDL L I G Sbjct: 1 MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S + G + ++ + T + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQSSSELHHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE ++V + LR+KL G ++I TV G GY L + Sbjct: 181 WDDEVSSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLSD 218 >gi|161506258|ref|YP_001573369.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867605|gb|ABX24228.1| hypothetical protein SARI_04453 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 270 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 52 MRILLIEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 111 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A+VRR+ Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S + G +++N + + L KE+ ++ELL K L +++ LY+ Sbjct: 172 GQASSELRHGQVTLNPGNLVATLADAPLALKPKEFALLELLMRNKGRVLPRKLIEEKLYN 231 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V + LR+KL G +I TV G GY L Sbjct: 232 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 267 >gi|115377125|ref|ZP_01464339.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1] gi|310822859|ref|YP_003955217.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca DW4/3-1] gi|115365834|gb|EAU64855.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1] gi|309395931|gb|ADO73390.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca DW4/3-1] Length = 226 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++ LA IE L++ F+ V + G G+ + D ++LDL L DI G E Sbjct: 3 RILIIEDEQDLAGLIEYNLRAAGFDPEVANSGAGGLAKARTRLPDLVLLDLMLPDISGHE 62 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VLR L+ + PV I+S D+++GL+ GADDY+ KPF+ EL+ R++A++RR+ Sbjct: 63 VLRMLKNDPGLRAAPVVIVSAKGQEADRIQGLEMGADDYVVKPFSVRELMLRVKAVLRRA 122 Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G++ ++ V V+G + LT E++++ L R T+E+ L+ Sbjct: 123 DADEGPSTQLTAGEIQLDTSRHQVRVKGEEVVLTALEFRLLHTLLERGGRVQTREVLLSD 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + E + +D I +LR+KL A + IETV G GY L Sbjct: 183 VWGIQAEIHTRTVDTHIKRLREKLGPAG---DIIETVRGVGYKL 223 >gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 244 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 19/240 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ LA +I L+ ++V G ++ + D I+LD+ L + G E Sbjct: 4 KILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSERPDLIVLDIMLPGMDGLE 63 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR +TP+ +L+ DKV GL+ GADDY++KPF + EL+AR+RA++RRS Sbjct: 64 VCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALIRRS 123 Query: 120 -----------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162 R A +V G L ++L + V +G I L K+++++ L Sbjct: 124 DYVPGGEGENGEEPEQERRSANRELVAGPLRIDLAGRRVNCRGQDIELQPKQFELLAYLV 183 Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + T LT++ L++++ + + +DV + LR+KL I+TV G GYV R Sbjct: 184 RNRGTVLTRDQLLHNVWGYDYVGDTRTVDVHVRWLREKLEEDPANPKLIQTVRGVGYVFR 243 >gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 229 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA ++ L+ E ++V V GED + + D +++D L + G EV Sbjct: 5 VLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIEV 64 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + + P+ +L+ D+VRGL +GADDY+ KPF+ EL ARIRA++RR R Sbjct: 65 CRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRIR 124 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+ +I GD++++ A V+ IHL E+++++ L ++E L+ ++ Sbjct: 125 PGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV + +LRK L+N ++ I TV GY NA Sbjct: 185 GSDVYVEARTVDVHVGRLRKALNNKE-ERDPIRTVRSAGYAFDVNA 229 >gi|319944908|ref|ZP_08019170.1| two component response regulator [Lautropia mirabilis ATCC 51599] gi|319741478|gb|EFV93903.1| two component response regulator [Lautropia mirabilis ATCC 51599] Length = 221 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +++ L ++ G + + +D ++LDLGL G Sbjct: 1 MRVLLVEDDPMIGNAVHGALNDASWAADWVKDGNSALTALRTQHYDLVLLDLGLPGRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR++R + PV I++ +++D++ GL +GADDYI KPF EL+AR+RA++RR Sbjct: 61 EVLRSIRSQPTTLPVLIVTARDALDDRIAGLDAGADDYILKPFEISELLARMRAVLRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A ++ + L+++ QG + L+ +E+ ++ L R L++ + +Y Sbjct: 121 GQANPILSSALLTLDPATHEASRQGQPTVRLSNREFALLHALMQRPGAILSRADLEDRIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E E I+ I LRKKL G I + G G+++ + A Sbjct: 181 GWGQEVESNAIEYLIHSLRKKL-----GSEAIRNIRGAGWMVSKQA 221 >gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4] gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4] Length = 237 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ L+ E + V + GE+ + L +++ IILDL + + G Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VARI+A++RR Sbjct: 64 EVCRRLR-NKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122 Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S Q +L+ L+++++ V V G I LTGKE ++++ + TK Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGY 228 >gi|126470034|dbj|BAF48119.1| hypothetical protein [Rhodococcus rhodochrous] Length = 251 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R +++ED+ ALA+ I L+ + F +T G + I L + + D ++LDLGL + G Sbjct: 24 LRAMVVEDEAALANLIGSYLERDGFEATITGDGAEAIALARRIDPDVLVLDLGLPSLDGV 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + V +L+ + D + GL GADDY++KPF EL+ARI+A++RR R Sbjct: 84 EVCRQLRTFSDAY-VVMLTARTEELDTLIGLSVGADDYMTKPFGPRELIARIQAMMRRPR 142 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ + GDLS++++ + V V G + LT E+ ++ LS +T+ + Sbjct: 143 TTDTARSRQIRTFGDLSIDVEGREVTVDGVPVSLTRTEFDVLAALSQDPGIVITRAQLIG 202 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + ++DV I LR+KL + A Y+ TV G GY Sbjct: 203 AVWGPNWVGDEHLVDVHIGHLRRKLGDDATRGRYVRTVRGVGY 245 >gi|124005018|ref|ZP_01689861.1| two-component system response regulator [Microscilla marina ATCC 23134] gi|123989696|gb|EAY29242.1| two-component system response regulator [Microscilla marina ATCC 23134] Length = 225 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L ++ LK+E + E E Y++D +ILD+GL D G Sbjct: 1 MKILIVEDEQQLTAALVSYLKNEGYVCESVLNFEQATEKVHLYDYDIVILDIGLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ L+ + V I+S +S++DK+ GL GADDYI+KPF+ EL ARI++I+RR Sbjct: 61 DLLKLLKKLRSQAGVLIISAKNSLDDKLAGLDLGADDYITKPFHLAELNARIKSILRRRN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 ++ ++ VN D V G + LT KE +++ KN LTKE HL+ Sbjct: 121 FEGNHEVIFQEIRVNTDKFETLVNGQLVVLTQKEQELLLYFISNKNRVLTKESIAEHLWG 180 Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D D + I I LR+K++ GGKNY++TV+G GY Sbjct: 181 DHMDMADSFDFIYTHIKNLRRKIAQ-KGGKNYLQTVYGIGY 220 >gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 235 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L + G Sbjct: 4 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDYI+KP++ EL+ARIRA++RR++ Sbjct: 64 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 122 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A+S +V GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 123 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ G Y+ TV G GY Sbjct: 183 LIDRIWGSDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGY 228 >gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 238 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 133/236 (56%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L+ E + V V GE ++ + D +ILDL L I G E Sbjct: 4 KILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVEEDVPDLVILDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V R +R K P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR + Sbjct: 64 VAREIR-KKHDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQNT 122 Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 HAQ I GDL+++ +A +V +G I LT +E++++ L+ +T+E Sbjct: 123 AAHAQPEEPENQDIEIGDLTIHPEAYSVSKRGANIELTHREFELLHYLAQHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++ +V+ +DV + +LR+K+ ++ ++ T G GY LR D+ Sbjct: 183 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTWLVTRRGVGYYLRNPDSDQA 238 >gi|331002565|ref|ZP_08326081.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon 107 str. F0167] gi|330408293|gb|EGG87769.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon 107 str. F0167] Length = 235 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 123/229 (53%), Gaps = 16/229 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPG 59 RIL+++DD+ +A I L L E + + GE L F EF I+LDL L I G Sbjct: 6 RILIVDDDENIAELISLYLMKECYETKIVGDGESA--LADFDEFKPHLILLDLMLPGIDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++V R +R AK TP+ +LS + DKV GL+ GADDY+ KPF+ +EL+AR++A++RR Sbjct: 64 YQVCREIR-AKSGTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRY 122 Query: 120 RGHAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S+ + DL VN+ V G + + KE +++ LS N T Sbjct: 123 HSSNISIPDLHNGGEYVEYPDLVVNITNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFT 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E L++++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 183 REQLLDNIWGYEYIGDTRTVDVHIKRLREKIHDNQFWS--ISTVWGIGY 229 >gi|302381998|ref|YP_003817821.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192626|gb|ADL00198.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 223 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD A ++ L V G G+ + E+D ++D + + G Sbjct: 1 MKILVVEDDAEAAQAMVRGLTEGGHTVSHAIDGAYGLLEAQKGEYDVYVVDRMMPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR TPV LS M +ED+V GL++G DDY+ KP+ EL+AR+ A+ RR Sbjct: 61 GMVETLRKDGDQTPVLFLSAMGEVEDRVVGLKAGGDDYLVKPYAFAELIARVEALSRRRE 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q+++ GDL +NL A+TV I L +E+Q++E L ++T+ M L ++ Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRGTSEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P+ +IDV I +LR K+ + ++TV G GY L Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGF-DRAMLQTVRGAGYRL 221 >gi|209516224|ref|ZP_03265082.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209503335|gb|EEA03333.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 232 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ++LIEDD + + + L+ E V + G DGI + D +I+DLGL DI G +V Sbjct: 8 VVLIEDDSHICRYVRMSLQEEAMRVLDVNTGRDGIAMTASARPDLVIVDLGLPDIDGLDV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ LR P+ +LSG + E+KV L +GADDY++KPF+ EL ARIRA++RR Sbjct: 68 IQQLR-GWSDVPIIVLSGRTRDEEKVAALNAGADDYLTKPFSIAELEARIRALLRRQNRC 126 Query: 123 --AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+S V+ G ++V+L A++V+ +HLT EY+++ L R +T L ++ Sbjct: 127 VIAESAKVSFGSITVDLVARSVQCDYQAVHLTPIEYRLLVALVRRAGCVVTHHQLLQEVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++ LR+KL +I T G GY L Sbjct: 187 GPSHAENAHYLRIYMGHLRQKLERDPAQPEHIVTETGVGYRL 228 >gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 248 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A+ + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 6 RILIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A +L + G LS++ + G I LT +E+ ++ + ++ Sbjct: 126 LAKDSRIEAGNLRIAG-LSIDPLTREAAANGKPIELTPREFDLLYYFAQHPGKVFSRMDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 231 >gi|187927399|ref|YP_001897886.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|241661925|ref|YP_002980285.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12D] gi|309779901|ref|ZP_07674655.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|187724289|gb|ACD25454.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240863952|gb|ACS61613.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|308921260|gb|EFP66903.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 242 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD +A + + L+ E + V G G + +DA++LDL L I G E Sbjct: 6 RVLLVEDDAHIAELLRMHLRDEGYAVVHAADGHAGQREMERGNWDALVLDLMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R RV TP+ I+S S+ ++ GL+ GADDY++KPF+ ELVAR++A++RR+ Sbjct: 66 ICRRARVQARYTPIIIISARSTEVHRILGLELGADDYLAKPFSVLELVARVKALIRRTDA 125 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ + G+L + A+ V V G I LT +E+ ++ + ++ L Sbjct: 126 LARNARMESGSLTLGNLEIEPLAREVRVDGKPIELTPREFDLLHFFARHPGKVFSRLDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N ++ + + ++ I +LR K+ I TVWGRGY L Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRAKVEVDPAQPRRILTVWGRGYKL 231 >gi|160879819|ref|YP_001558787.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428485|gb|ABX42048.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 219 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL++ED++A+ I L L E + GE+ L + Y +D I+LD+ L I G+ Sbjct: 2 LNILIVEDEQAINELIYLNLSDEGYRCTRAYDGEEAANLIENYNYDLILLDIMLPKINGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + + TPV ++ S I D++RGL+ GADDYISKPF EL+AR+ A++RR Sbjct: 62 ELFDY--IHPLGTPVIFITAKSDINDRIRGLRLGADDYISKPFQVGELLARVEAVIRRF- 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ I ++++L+++ V G I LT KE++++ L KN L + +++ Sbjct: 119 GKSERKIELYGVTIDLNSREVRKDGQLIELTVKEFELLIQLIQNKNVALRRSWLYERVWE 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E + +D I +LRKKL ++ I+TV+ GY L Sbjct: 179 GEFTGETRTLDTHIQRLRKKLE----WEDRIKTVFRIGYRL 215 >gi|73749211|ref|YP_308450.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660927|emb|CAI83534.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] Length = 223 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 125/223 (56%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIEDD LA I L+ + V G+ G E+ Y FD IILD+ L +I GF Sbjct: 1 MKLLLIEDDTNLAKVITSGLEENGYVVNWESDGKLGAEMALAYTFDVIILDIMLPEINGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + +R TPV +L+ +D+VRGL GADDY+ KPF+ EL+AR+RA++RR+ Sbjct: 61 SVCKKIRTEGNQTPVIMLTARYQEDDRVRGLDCGADDYLVKPFSFPELLARLRALLRRAN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I L++N + V I T KEY ++E L L KN +TK M H+++ Sbjct: 121 NQHSPSIKLRKLTLNTVDRRVFYDDKEIEFTAKEYGILEYLVLNKNCIITKNMIEEHIWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +I+V I ++RKKL N + I+TV G GY++ + Sbjct: 181 SESDIFSNVIEVLISRIRKKLDN-NNKNSLIKTVKGLGYIIED 222 >gi|300724027|ref|YP_003713342.1| transcriptional regulatory protein tctD [Xenorhabdus nematophila ATCC 19061] gi|297630559|emb|CBJ91224.1| Transcriptional regulatory protein tctD [Xenorhabdus nematophila ATCC 19061] Length = 221 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 10/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED L+H ++ L + F V DL EDGI +L + + +ILD+ L + Sbjct: 1 MRLLLVEDHPDLSHWLQKALSTSGF---VVDLAEDGIMADQLLQTESYALLILDVALPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L LR + PV +L+ S + D+V+GL SGADDY++KPF+ +EL ARIRA++R Sbjct: 58 DGISLLLRLRKRGQNLPVLLLTAKSGVTDRVKGLNSGADDYLTKPFDFQELEARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +Q + G L V D + + LT +E ++ L LR+ ++K+ Sbjct: 118 RGSGISQENLKFGSL-VYEDDGYFLLNNVPLALTPRELSVLTTLFLRRGRPVSKQQLFEQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ D+ + I++++ +LRKKL N+ G I T+ G GY L Sbjct: 177 VFSLSDDANPQSIELYVHRLRKKLLNSDVG---IGTLRGLGYRL 217 >gi|297588589|ref|ZP_06947232.1| response regulator [Finegoldia magna ATCC 53516] gi|297573962|gb|EFH92683.1| response regulator [Finegoldia magna ATCC 53516] Length = 229 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 128/222 (57%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+K + +IE+ LK++N+NV G D +EL + + D ++D+ + + G E+ Sbjct: 4 IMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGYDALELMEKNKIDLFLVDIMMEGMDGLEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 + +R + P+ ILS S + DKV GL GADDYI+KPF+ EL+ARI++ +RR S Sbjct: 64 TQKIREVS-NAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLRRLELS 122 Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ ++ G L++N D K V + G I LT EY +I LL K T E + Sbjct: 123 KDNSLNGNVFSAGRLTINDDKKEVLIDGEEIKLTPYEYGIILLLLKNKGIVFTSEEIYEN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ KI+ V I +LR+K+ + I++V+G GY Sbjct: 183 VWEAPPYDVKKIVSVHISRLREKVEINPRRPDLIKSVYGMGY 224 >gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 248 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 124/224 (55%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ + + + + L E F V G + +E+ + FD I+LDL L D+ G+ Sbjct: 14 LQVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGW 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + +R K + +L+ S +DKV GL GADDY++KPF EEL+AR+ +++RRS Sbjct: 74 QVCKKIR-EKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSA 132 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + L + + + V + H + T KE+ + L+ + ++E + Sbjct: 133 ITQSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELV 192 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 N ++ E EV+++D I +R+K A G N I+TVWG GY Sbjct: 193 NLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGY 236 >gi|228933303|ref|ZP_04096159.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826464|gb|EEM72241.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 232 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L + GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKTHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMDQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] Length = 252 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V G L D I+LD+ L D+ GF Sbjct: 29 RLLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTENPDLIVLDVMLPDMDGFT 88 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A PV L+ + DK++GL G DDY++KPF EE+VARIRAI+RR+ Sbjct: 89 VTRRLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMD 148 Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I+ DL ++ DA V G + L+ E++++ L + + ++K L+H+++ Sbjct: 149 SVDDGILRIADLELDEDAYEVRRDGVELELSPTEFKLLRYLMINEGRVVSKMQILDHVWE 208 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + I++ +I LR+KL+ K+ I T G GY+LR Sbjct: 209 YDWEGDAAIVESYISYLRRKLAVHEDSKDLIHTRRGVGYMLR 250 >gi|206563270|ref|YP_002234033.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198039310|emb|CAR55275.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 231 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + ++ L E + V GEDG +++D ++LD+ L + GF Sbjct: 1 MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ ++D+VRGL+ GADDY++KPF+ EL+ R+RA+ RR+R Sbjct: 61 GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT +E+Q++ +L+ R L+K ++D Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDE 228 + +++ I +LR KL K + T+ G GYVL RE+ E Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVLEAREDGDAE 228 >gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans TK24] gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans TK24] Length = 229 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IEDD+A+ + L L+ + V GEDG+E + + DA++LDL L + G E Sbjct: 3 RVLIIEDDRAVRDGVRLALRRQGHEVAAAATGEDGLEQLRSFRPDAVVLDLMLPGMSGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A P+ + + D V GL++GADDY+ KP L ARIRA++RR G Sbjct: 63 VCRRIR-AHDQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVLRRVGG 121 Query: 122 HA--QSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A Q T GDL ++ TV QG + L E +++ LS +++ L Sbjct: 122 TADDQGTPRTEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + +++D + +LR K+ + G Y+ TV G GY Sbjct: 182 AVWEHNYHGDARLVDACVKRLRSKIGESPGSPRYVHTVRGFGY 224 >gi|319901144|ref|YP_004160872.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] gi|319416175|gb|ADV43286.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] Length = 230 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 132/228 (57%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIED+ ++ I L+ + V TD G + + ++D I+LD+ L I G Sbjct: 1 MLILLIEDNARISEFIVRGLEENDHAVIWTDNGIEARNMITQRKWDLILLDIMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ R K++ P+ ++S +S D+++ L GAD+Y++KPF EL+A I A+ RR++ Sbjct: 61 ELLQYTRRKKVNAPILVISALSETNDRIKALDYGADNYLTKPFLFRELIAHINALTRRAK 120 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++ DL +N+D +E G I LT +E++++++L KN +T+ L++ Sbjct: 121 LNYNEDMNILECNDLRLNIDKHQIERAGKEIRLTIQEFKLLKILMENKNRVVTRTELLDN 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + ++DV+I LR K+ +A I+T+ GRGY++++ + Sbjct: 181 VWGINCDNTTNVVDVYISYLRNKI-DAEHDIKLIKTIKGRGYLIQDTS 227 >gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 226 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + +L+ E F V V G + + + + D I+LDL L + G E Sbjct: 3 RILIVEDEESFSDPLSYLLEKEGFEVTVAADGNEALSVFERDSADLILLDLMLPGMSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + PV +L+ S DKV GL+ GADDY++KP++ ELVAR+RA++RR Sbjct: 63 VCRQVR-QRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + I G + ++++ V V G ++ L KE++++E+L LT+ ++ + Sbjct: 122 QEEPMSATISAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNAGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ Y+ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGY 222 >gi|239627744|ref|ZP_04670775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517890|gb|EEQ57756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 229 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++++A + L+ F V + + G +G++ ++D +ILDL L GFE Sbjct: 3 KILIVEDEESIAELEKDYLELSGFEVEIENDGTEGLDKALKEDYDLLILDLMLPGTDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K +TP+ ++S DK+RGL GADDYI+KPF+ E+VAR++A + R Sbjct: 63 ICKKVREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + +I L ++ A+ V + G T KE+ ++ L+ N TKE Sbjct: 122 LIGSGQPSNEIIEIRGLKIDKTARRVWINGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|145596986|ref|YP_001161283.1| response regulator receiver [Salinispora tropica CNB-440] gi|145306323|gb|ABP56905.1| response regulator receiver [Salinispora tropica CNB-440] Length = 228 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 5/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ A+A + L L + F V++ G+ G+ + +LD+ L +PG E+ Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR A TPV L+ D++ GL+ GADDY++KPF+ ELVAR+RA++RR G Sbjct: 71 CRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVAGP 130 Query: 123 AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G ++++ D +TV G + LT E+ ++ L R T+E L ++ Sbjct: 131 PPGRPRIVGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWGY 190 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +DV + ++R KL G ++ I T G GY + Sbjct: 191 AVPAGTRTVDVHVAQVRAKL----GPESVIRTHRGVGYAV 226 >gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13] Length = 233 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E + VY GE+ + + D I+LD+ L G E Sbjct: 4 KILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVEEVRPDLILLDIMLPQRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQ 122 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A S I G L ++ DA V +G I LT +E++++ L+ +T+E L Sbjct: 123 KAADTEEPSEIAIGSLVIHPDAYMVTKRGDMIELTHREFELLHYLAKHIGQVMTREHLLQ 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ + +I T G GY LR+ ++ Sbjct: 183 TVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLRQTEQE 233 >gi|13472734|ref|NP_104301.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14023481|dbj|BAB50087.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 229 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D+ + + + L S+ + + + IEL + + D ++LDLGL + G Sbjct: 6 VRILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMEQEKPDLVLLDLGLPGMGGH 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+LR R + PV ILS + V L+ GADDY++KPF ELVARIR +R Sbjct: 66 ELLRKWRDEGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKF 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + +GDLSV+L + V+V+G I L+ KEY ++ +L LT L + Sbjct: 126 QQQGEKPVFQSGDLSVDLVKRIVKVEGKEIKLSPKEYDILRILVQHAGKVLTHHFILKQI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D D +V+ + V++ +LR+K+ YI T G GY LR Sbjct: 186 WD--DSTDVQYLRVYVRQLRQKIEKTPDQPRYITTETGVGYRLR 227 >gi|228920706|ref|ZP_04084047.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228952377|ref|ZP_04114463.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807294|gb|EEM53827.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228838924|gb|EEM84224.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 232 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 6 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 66 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|153934205|ref|YP_001384185.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153934696|ref|YP_001387726.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226949224|ref|YP_002804315.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|152930249|gb|ABS35749.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152930610|gb|ABS36109.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226844186|gb|ACO86852.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 228 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + + V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR+ A +RR + Sbjct: 63 VCQKIR-DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I+ G L+++L+++ V + I T KE+ ++ELL+L +KE + Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + I K+R K + N+I TVWG GY Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGY 222 >gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 229 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ALA ++ L E + V V G +G+ + D IILD L + G E Sbjct: 9 QILLVEDEEALAQFLKQELTYEGYEVTVEQDGMNGLVKARESNPDLIILDWMLPRLSGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ +L+ + D+V GL SGA+DYI KPF+ EE +AR+R +R + Sbjct: 69 ICRRLRTSHNHVPIILLTAKDEVSDRVTGLDSGANDYIIKPFSLEEFLARVRVHIRHLQE 128 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ DLS++ + V I LT KEY ++E L LT+ L ++ Sbjct: 129 PNADLLTFYDLSLDRKTREVRRANRLIDLTAKEYDLLEYLMSHPRQVLTRNQILEQVWGY 188 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V++ LR KL + G I+TV GYVLRE Sbjct: 189 DFMGDSNIIEVYVRYLRIKLE-SEGESRLIQTVRSVGYVLRE 229 >gi|118443185|ref|YP_877407.1| two-component response regulator [Clostridium novyi NT] gi|118133641|gb|ABK60685.1| two-component response regulator [Clostridium novyi NT] Length = 234 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A+ I+ L EN++V + G++G+E K +D IILD+ L +I GF Sbjct: 4 KILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R+ + P+ ILS DKV+GL+ GADDYI+KPF+ EL AR+ ++R +G Sbjct: 64 VCKNIRLLS-NVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKG 122 Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + T D L++ D V + I LT KE+ ++ +L+ ++ TK+ Sbjct: 123 YNKK---TDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKK 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + I V + LR+KL + YI+TVWG GY Sbjct: 180 ELYENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGY 226 >gi|90411269|ref|ZP_01219281.1| DNA-binding response regulator ColR, putative [Photobacterium profundum 3TCK] gi|90327798|gb|EAS44129.1| DNA-binding response regulator ColR, putative [Photobacterium profundum 3TCK] Length = 222 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD+ LA ++ +++ EN G G+ L + +D +++D+GL + G Sbjct: 3 RVLLIEDDRDLAETLLQLMEFENMVPDYASNGVAGLTLAQSNRYDILVIDIGLPKMNGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR TP+ L+ SI+DK+ G SG DDY+SKPF+ EL+ARI + R R Sbjct: 63 LCEQLRQEGCQTPILFLTARGSIDDKLAGFASGGDDYLSKPFDNRELLARIMVLSGR-RS 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 LI DLS++ A V H + LT + ++ELL +++E + L+ G Sbjct: 122 SQTPLIKVADLSLDNSAYQVFRGEHHVKLTPASFTILELLMRASPKVISREELEDALW-G 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P + I LR+ L G K + TV G+G+V++E+ Sbjct: 181 EDAPNSNTLKAHIYYLRRSLEQVPGPK-LLHTVPGKGWVIKED 222 >gi|322833622|ref|YP_004213649.1| transcriptional regulator [Rahnella sp. Y9602] gi|321168823|gb|ADW74522.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 224 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MRIL+IED+ L H + + L+ V D ED E F + D I+DLGL Sbjct: 1 MRILVIEDNALLRHHLSVQLREMGHQV---DAAEDAKEADYFLHEHAPDIAIVDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + + P+ +L+ S +DKV L++GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSHQNNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVLARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + V I LT EY +IE L ++K+ + Sbjct: 118 RNSGLASQVITLQPFQIDLSRRELTVNEQPIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E +DV + +LRKKL A + I TV G+GY Sbjct: 178 LYPDAELRESHTVDVLMGRLRKKL-QAEHPVDVITTVRGQGY 218 >gi|302865510|ref|YP_003834147.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315502058|ref|YP_004080945.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302568369|gb|ADL44571.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315408677|gb|ADU06794.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 229 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+L+++DD ALA + ++L+SE F +V D GE + + D ++LDL L + G Sbjct: 4 RVLVVDDDPALAEMLGIVLRSEGFVPSFVAD-GERALAAFRDNRPDIVLLDLMLPGMSGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V RA+R + P+ +L+ S D V GL+SGADDY+ KPF +ELVAR+RA +RR Sbjct: 63 DVARAIR-GESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGE 121 Query: 121 GHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A ++ G +++++ A TV G + LT E+ ++ L+ + T+E+ L Sbjct: 122 DVAPEMLTIGPPGNQITIDVPAHTVSRDGEEVKLTPLEFDLLVALARKPRQVFTREVLLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + ++++V + +LR K+ I TV G GY Sbjct: 182 QVWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGY 224 >gi|160896382|ref|YP_001561964.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160361966|gb|ABX33579.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 253 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 126/232 (54%), Gaps = 16/232 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A ++ L+ + V V + + FDA++LDLGL D G Sbjct: 22 MRILVVEDNAGIAAGLQANLEQRRYAVDVCTTVAEAWHALEMERFDAVLLDLGLPDGDGS 81 Query: 61 EVLR-----------ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109 E+LR + + +TPV IL+ + +++ GL GADDY+ KPF+ +EL Sbjct: 82 EILRRLRGPRRPGGDSQALPDPNTPVLILTARDQVRERIAGLDLGADDYLVKPFDIDELE 141 Query: 110 ARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 AR+RA++RR+ G A +I G+L V+ A+TV G + ++ +E+ ++ +L + L Sbjct: 142 ARLRAMLRRAGGQAAPVIRHGELEVDPAARTVRRDGKLVEMSPREFSVLWVLLQARGRVL 201 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ HLY E ++V I LRKKL NA+ I T+ G GY L Sbjct: 202 SRQQIEEHLYSWGTAVESNAVEVHIHHLRKKLGNAS-----IVTMRGVGYFL 248 >gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 228 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++DD + + L E ++V V + G + + D ++LD+ + D+ G Sbjct: 3 LRVLVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASPPDLMVLDIMMPDVDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R A + P+ +L+ ++ D+V+GL GADDY+ KPF EEL+AR+RA+ RR Sbjct: 63 EVCRRIRAAGETFPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRALSRRGA 122 Query: 119 -SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++G ++ DL ++ + +I LT KEY+++ L LT++ + Sbjct: 123 PAQGEDGHRVLQYADLRLDTATREAYRGDRQISLTAKEYELLHLFLSHPRQVLTRDTLME 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E +++V++ LR KL A G I+TV G GYVL+E Sbjct: 183 KVWGYDYSGESNVLEVYVAYLRNKL-EAGGEPRLIQTVRGVGYVLKE 228 >gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis] Length = 240 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ ++ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RRS Sbjct: 64 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123 Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A S IV GDL + D + ++ LT KE++++ L K LT+ Sbjct: 124 RAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ N YI+T+ G GY L E +E Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 240 >gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 250 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54 R+L++ED++ + + + L+ E + V G +EL + E FD ++LDL L Sbjct: 20 RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR S P+ ILS S D+V GL+ GADDY++KPF+ E+VAR RA Sbjct: 80 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 139 Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR R LI T D+++N V V+G + L+ KE++++EL ++ Sbjct: 140 LLRRQRFSNLPLIPTLKYKDINLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGY 247 >gi|257884144|ref|ZP_05663797.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257819982|gb|EEV47130.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 234 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G +G+EL FD IILD+ L + G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR K TP+ +L+ D++ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIEP 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 QS + G ++ +L V V H I LT KE++++ RK+ + ++ Sbjct: 123 RKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDTL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ + +I+DV + LR+K+ Y+ TV G GY +E + Sbjct: 183 LDRIWNFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKFQEPKR 234 >gi|229019899|ref|ZP_04176696.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273] gi|228741389|gb|EEL91592.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273] Length = 229 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|215486384|ref|YP_002328815.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O127:H6 str. E2348/69] gi|312966386|ref|ZP_07780608.1| transcriptional regulatory protein phoP [Escherichia coli 2362-75] gi|215264456|emb|CAS08819.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O127:H6 str. E2348/69] gi|312288839|gb|EFR16737.1| transcriptional regulatory protein phoP [Escherichia coli 2362-75] Length = 223 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ ++ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S P+ +L+ S +DKV L +GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A ++ I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQDVITTVRGQGYLF 220 >gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis L2-32] gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis L2-32] Length = 234 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L + G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDYI+KP++ EL+ARIRA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 121 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A+S +V GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 122 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ G Y+ TV G GY Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGY 227 >gi|42524753|ref|NP_970133.1| two component response regulator [Bdellovibrio bacteriovorus HD100] gi|39576963|emb|CAE78192.1| two component response regulator [Bdellovibrio bacteriovorus HD100] Length = 224 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 127/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++EDD +A ++ L +V V G E + +D I+LDL L ++ G+ Sbjct: 1 MRCLVVEDDNEIATIVKQGLGELEGDVDVESNGRRAFEKAQTNHYDIIVLDLMLPEMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR +I+TP+ ILS + ++D+++GL G DDY++KPF EL R++ +++RS+ Sbjct: 61 TFAKSLREKEINTPILILSALRELDDRLKGLSMGGDDYLTKPFAMAELQIRVKNLLKRSQ 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + +V DL +N + V G ++ L +E+ +++L N + K+ L ++ Sbjct: 121 KASEVTQLVFQDLKLNRLNRDVVRAGRKLDLQEREFVLLDLFMSNPNKIIGKQTILKEVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ ++DV +C+LR KL + I TV G GYVL+ Sbjct: 181 NYDFDPQTNVVDVLVCRLRNKLEKDFPTR-LIYTVRGVGYVLK 222 >gi|319936818|ref|ZP_08011230.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus sp. 29_1] gi|319808086|gb|EFW04658.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus sp. 29_1] Length = 233 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 8/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD A+ + I L++ N+ + GE I + D I+LDLGL DI G E+ Sbjct: 7 ILVVEDDSAVRNLISTTLQAHNYKYLLASNGETAILEASSHNPDIILLDLGLPDIDGIEI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ +R + + P+ ++S S DK+ L GADDY++KPF+ EEL+AR+R +RR Sbjct: 67 IKKVR-SWSNMPIIVISARSEDSDKIEALDVGADDYLTKPFSVEELLARLRVTLRRLSYI 125 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + H+ + + G L ++ A + +HLT EY+++ +LS LT + Sbjct: 126 ENTNVHSSTFL-NGGLKIDYSAGCAYLNDEELHLTPIEYKLLCVLSKNMGKVLTHTYITH 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +V + VF+ LRKK+ YI+T G GY Sbjct: 185 EIWGSSWESDVASLRVFMATLRKKIEKEPSSPQYIQTHVGVGY 227 >gi|90410002|ref|ZP_01218019.1| hypothetical DNA-binding response regulator [Photobacterium profundum 3TCK] gi|90329355|gb|EAS45612.1| hypothetical DNA-binding response regulator [Photobacterium profundum 3TCK] Length = 225 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD I L+ F V D G G+ + E+ +ILD L + G Sbjct: 1 MKILVIEDDLTTREFIAKGLREHGFVVDEADDGHKGLMMATSCEYQLVILDRMLPILDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL A+R + TP+ ILS M S+ED+V GL +G+DDY++KPF EL+AR + +V+R Sbjct: 61 KVLAAIRATENQTPILILSAMDSVEDRVTGLTAGSDDYLTKPFALAELIARAQILVKRH- 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H+ + IVT DL +++ + V ++L KE+ +++ L +++ Sbjct: 120 -HSSTKIVTEYVYDDLRLDMKSHRVWRGERLLNLQQKEFLLLQYLLEHAENVVSRMSLFE 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +P+ +IDV I LRKKL G + I T+ G GYVLR + Sbjct: 179 SVWSYHFDPKTNVIDVHIANLRKKLEE-NGELSLIHTIRGAGYVLRRS 225 >gi|238754750|ref|ZP_04616102.1| Transcriptional regulator in 2-component system [Yersinia ruckeri ATCC 29473] gi|238707058|gb|EEP99423.1| Transcriptional regulator in 2-component system [Yersinia ruckeri ATCC 29473] Length = 232 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FN+ V GE + L D ++LD+ + G E Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNIVVAYDGEQALNLLD-NSIDLLLLDIMMPRKNGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S D+V GL+ GADDY++KPFN ELVARIRAI+RRS Sbjct: 62 TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q V L +N + +G + LTG E+ ++ LL+ +++E Sbjct: 121 NEQQQNVDQGAPTLEVDCLQLNPGRQEASFEGQVLDLTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G ++ +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGLSWFKTLRGRGYLM 228 >gi|229032321|ref|ZP_04188294.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271] gi|228729101|gb|EEL80104.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271] Length = 229 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEHSGEVGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|227494938|ref|ZP_03925254.1| response regulator [Actinomyces coleocanis DSM 15436] gi|226831390|gb|EEH63773.1| response regulator [Actinomyces coleocanis DSM 15436] Length = 226 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 117/218 (53%), Gaps = 3/218 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ++L+EDD A+A + L E ++V D G L + D ILDLGL D+ G +V Sbjct: 4 VILVEDDSAIAEPLARALSREGYDVRSHDTG--AAALTEVEAADLFILDLGLPDMDGLDV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R +R +TP+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 62 ARHVRKLGKTTPILILTARADEIDMVVGLDAGADDYVTKPFRLAELLARVRALLRRIGSE 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +V D+ V++ A V + LT KE+ ++ +L + +++ + ++ Sbjct: 122 EPEEDLVAQDVRVSVTAHRAFVNERELQLTAKEFDLLRVLVREAGNVVERDLLMREVWGS 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ + LR+KL + A +YI TV G G+ Sbjct: 182 DPTGSTKTLDMHVSWLRRKLGDDAAHPHYITTVRGMGF 219 >gi|253682442|ref|ZP_04863239.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] gi|253562154|gb|EES91606.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] Length = 228 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 127/227 (55%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D++++ + + + L ENF+V + G+D I+L + D I+LDL L D+ GF Sbjct: 1 MKILLVDDEESILNLVRMNLMFENFDVVTAECGKDAIKLFQSELPDLIVLDLMLPDMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V+ ++ P+ +LS + I DK+ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 QVIHEIQNINSEIPIIVLSAKNQINDKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +I G + + L + V + ++ T E++++ L+ T+E Sbjct: 121 KVKLTTNNKETKKIIEKGFIKIMLLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTRE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + +D+ I ++RKKL N I+T++G GY Sbjct: 181 ELLDKIWGYDFSGNTRAVDIHIKRIRKKLLNHEEA---IKTIYGVGY 224 >gi|228958286|ref|ZP_04120012.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801367|gb|EEM48258.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 3 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGINGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 63 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] Length = 239 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 R+L++EDD +A + + L E ++V G+ G+ L + +DA++LD+ L + G Sbjct: 5 RVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + R P+ I+S S ++ GL+ GADDY++KPF+ ELVAR+RA++RR+ Sbjct: 65 QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124 Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQS I G L ++ A+T V+G + LT +E+ ++ + + + Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVEGTALELTPREFDLLLFFARHPDQVFARMEL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LN ++ + + ++ I +LR K+ + TVWGRGY L + A Sbjct: 185 LNQVWGYQHDGYEHTVNTHINRLRSKIETDPANPRRLLTVWGRGYKLVDPA 235 >gi|171056968|ref|YP_001789317.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774413|gb|ACB32552.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 235 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 128/239 (53%), Gaps = 22/239 (9%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGL----- 54 MR+LL+EDD + S+ L+ E V +V D+ L FD ++LDLGL Sbjct: 1 MRLLLVEDDPMIGSSLRAALRLEGMAVDWVRDVAAAQATLAS-ERFDLVLLDLGLPPGRA 59 Query: 55 --------TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKE 106 TD G +LR+LR + STPV +L+ D+VRGL +GADDY+ KPF + Sbjct: 60 ASNLTEPGTD--GLSLLRSLRSREDSTPVIVLTARDGPGDRVRGLDAGADDYLVKPFELD 117 Query: 107 ELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166 EL ARIRA++RR G AQS++ ++++ + V G + L+ +E ++E L R Sbjct: 118 ELAARIRAVMRRHSGRAQSVLSHRGVTLDPATRQVTRDGQPVLLSAREIAVLEALMTRPG 177 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LT+ + LY +E E + V+I +LR+KL G +I T+ G GY L ++ Sbjct: 178 AMLTRAQLEDRLYGWGEEIESNAVSVYIYQLRRKL-----GPGFIRTMRGLGYSLADDG 231 >gi|164688154|ref|ZP_02212182.1| hypothetical protein CLOBAR_01799 [Clostridium bartlettii DSM 16795] gi|164602567|gb|EDQ96032.1| hypothetical protein CLOBAR_01799 [Clostridium bartlettii DSM 16795] Length = 223 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ L SI L + +F GE+ + + + +D I+LDL L ++ G Sbjct: 1 MKVLVVEDNIKLLKSISDELNN-HFETESCSDGEEALYMIEQNIYDLIVLDLMLPNLSGI 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E+L+ +R I TPV IL+ S+ DKV + GA+DY++KPF EELVARI AI+R + Sbjct: 60 EILKCMRDKFIDTPVLILTAKESLNDKVSAFEIGANDYLTKPFYMEELVARIYAILRTNG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + A++ I DL ++L+ + V ++ I L K++ ++E L L K + L KE + ++ Sbjct: 120 KMQAKNTIDFKDLHLDLNKRRVFIKDEEIELQNKQFNLLEYLLLNKGSILLKEQIYDRVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++I++V+I LRKKLS G I+T GY+ Sbjct: 180 GIDSDVTIEIVEVYISHLRKKLS-KYGYDKCIKTKRKVGYMF 220 >gi|126463687|ref|YP_001044801.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|126105351|gb|ABN78029.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] Length = 228 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L++E V +GI+ +ILDLGL D G E Sbjct: 6 RILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGIDRAALDAPTLVILDLGLPDGDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120 VLR +R PV +LS S KV L +GA DY++KPF E +ARIRA++R RS Sbjct: 66 VLRTVR-GWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S+I +L ++L A+ V V G + LT +E+ ++ LL+ + +T+ M L ++ Sbjct: 125 PAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + + + V+I +LR KL + A +I T G GY R+ Sbjct: 185 PAHEEDSQYLRVYIRQLRAKLGDDAADPRWIFTEPGIGYRFRDR 228 >gi|295101813|emb|CBK99358.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 236 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 6/231 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + I LK+ + GE I + + D ++LDLGL DI G EV Sbjct: 6 ILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAIMMTTSHNPDIMLLDLGLPDIDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R++R + P+ +LS S DK+ L +GADDY++KPF+ +EL+AR+R RR Sbjct: 66 IRSVRTWS-NLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLNLL 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G + V G L ++ A V + + +HLT EY+++ +L+ LT Sbjct: 125 ASDGINSPVFVNGPLKIDFSAGCVWLSENELHLTPIEYKLLCVLAHNVGKVLTHTSLTQK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ E ++ + V++ LRKKL + I+T G GY + DE Sbjct: 185 VWGSTQENDIASLRVYMASLRKKLERYPDAPHLIQTHVGVGYRMLRAENDE 235 >gi|295402179|ref|ZP_06812137.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312111459|ref|YP_003989775.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975770|gb|EFG51390.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311216560|gb|ADP75164.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 222 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 118/224 (52%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL EDD L I MLK E V G+D K +D +ILD + G Sbjct: 1 MYILLAEDDTRLGKLIVYMLKKEKHTVDWVQDGDDAYYFAKHTHYDLLILDWMMPSKEGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV +ALR + + +L+ ++ED+V GL GADDY+ KPF EL ARIRA+ RR Sbjct: 61 EVCKALRKDGFNGAILMLTAKDAVEDRVAGLDCGADDYVVKPFEFSELFARIRALSRRIA 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ ++ G+LS+NL+ +++ +I LT +E+Q++EL N L +E+ + ++ Sbjct: 121 QPFQAEELSFGNLSLNLNEYSIKKGNKKIQLTNREFQLMELFMRHPNQILPRELIIERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ID FI LRKKL + I+ + G GY L + Sbjct: 181 GLDADISSNNIDSFIRLLRKKLGDDG---TLIQNIRGVGYKLSD 221 >gi|254386383|ref|ZP_05001689.1| turgor pressure regulator [Streptomyces sp. Mg1] gi|194345234|gb|EDX26200.1| turgor pressure regulator [Streptomyces sp. Mg1] Length = 227 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD L ++++ L++ F V G + L DAI+LDLGL D+ G E Sbjct: 3 RVLVVEDDPQLVRALKINLQARKFEVLEAGDGAMALRLAAARTPDAILLDLGLPDMDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R P+ +LS + E+K+R L +GADDY++KPF+ +EL+AR+RA RR Sbjct: 63 VIRGVR-GWSHVPILVLSARHTSEEKIRALDAGADDYVTKPFSMDELLARLRAATRRQEA 121 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A IVT + +++L A+ V V+G R + LT E+ ++ELL + +++ L Sbjct: 122 PASPAGIPGIVTDEFTIDLAARKV-VRGERTVRLTPTEWHLLELLIAKPGHLVSQRRLLL 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V++ +LR+KL Y+ T G GY Sbjct: 181 EVWGPTYSEHTNYLRVYMAQLRRKLEANPSHPRYLITEPGMGY 223 >gi|107026427|ref|YP_623938.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692385|ref|YP_837918.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170735613|ref|YP_001776873.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105895801|gb|ABF78965.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116650385|gb|ABK11025.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169817801|gb|ACA92383.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 231 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + ++ L E + V GEDG +++D ++LD+ L + GF Sbjct: 1 MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ ++D+VRGL+ GADDY++KPF+ EL+ R+RA+ RR+R Sbjct: 61 GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT +E+Q++ +L+ R L+K ++D Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGARLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDE 228 + +++ I +LR KL K + T+ G GYVL RE+ E Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFAEK-LLHTIRGMGYVLEAREDGDTE 228 >gi|126699438|ref|YP_001088335.1| two-component response regulator [Clostridium difficile 630] gi|254975465|ref|ZP_05271937.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092852|ref|ZP_05322330.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255101002|ref|ZP_05329979.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255306857|ref|ZP_05351028.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255314595|ref|ZP_05356178.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255517269|ref|ZP_05384945.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255650375|ref|ZP_05397277.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260683489|ref|YP_003214774.1| two-component response regulator [Clostridium difficile CD196] gi|260687085|ref|YP_003218218.1| two-component response regulator [Clostridium difficile R20291] gi|306520333|ref|ZP_07406680.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115250875|emb|CAJ68700.1| Two-component response regulator KdpE [Clostridium difficile] gi|260209652|emb|CBA63348.1| two-component response regulator [Clostridium difficile CD196] gi|260213101|emb|CBE04498.1| two-component response regulator [Clostridium difficile R20291] Length = 232 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDDK + I L +++++V G++GI + Y D ++LDLGL D+ G EV Sbjct: 6 ILLVEDDKTIRKFISTALLTQDYDVKEAITGKEGISIAVSYSPDVVLLDLGLEDMDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++A+R + P+ ++S DKV +GADDY++KPF+ EL+AR+R R S+ Sbjct: 66 IKAIRQFS-NIPIIVVSAREQDRDKVEVFDAGADDYLTKPFSIVELLARVRVAFRHSQVE 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 AQ S L ++ D + V V +HLT EY ++ LL+ LT + Sbjct: 125 AQQKDDVKSTFEVDKLLIDFDKRKVIVDDVEVHLTPIEYNILSLLAKHHGKVLTHNFIIK 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E K + VF+ LR+K+ YI T G GY L + Sbjct: 185 EIWGSVIGNETKSLRVFMATLRRKIEKQPANPRYIITEVGVGYRLND 231 >gi|30018518|ref|NP_830149.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229125764|ref|ZP_04254792.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|29894058|gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228657704|gb|EEL13514.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 233 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V + GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAEDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R AK P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|15887970|ref|NP_353651.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15155576|gb|AAK86436.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 225 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57 M+ILL+EDD + + L S ++ D +DG E L + +D I+D + + Sbjct: 1 MKILLVEDDNTTGNYVTKGLASAG---HIVDWVKDGREALAAGLDGGYDVAIVDRMIPGL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++++LR A I P+ L+ MS ++D+V GL++G DDY+ KPF EL ARI A+VR Sbjct: 58 DGLNLVKSLRAASIRIPILFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELTARINALVR 117 Query: 118 RSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R ++ + GDL +NL +T G RI L +E+ ++ELL + LTK MFL Sbjct: 118 RPPITTEKTRLRVGDLEMNLVTRTTSRGGQRIDLLPREFSLLELLMRNEGRILTKTMFLE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ +P+ +++ I +LR K+ + + TV GY L Sbjct: 178 KIWNFNFDPQSSVVETHISRLRAKIDKPF-DQPLLHTVKNTGYTL 221 >gi|300698227|ref|YP_003748888.1| Two-component transcriptional regulatory protein qseB [Ralstonia solanacearum CFBP2957] gi|299074951|emb|CBJ54520.1| Two-component transcriptional regulatory protein qseB [Ralstonia solanacearum CFBP2957] Length = 246 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 19/244 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE------------FDA 47 MR+LL+EDD + ++ L+ + F + +V D GE ++ FD Sbjct: 1 MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRD-GEAAVQAVGAPGAAAAAAESSASMFDL 59 Query: 48 IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107 ++LDLGL G +V+ +R I+ P+ IL+ ++ D+V GL +GADDY+ KPF+ +E Sbjct: 60 MLLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQE 119 Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 L AR+ A++RR G A L+ GD+ +N + V G + L+G+E+ ++ L R Sbjct: 120 LAARMHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFGVLHALLSRPGK 179 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++LY +E ++V+I LRKKL G ++I+ + G GYV+ Sbjct: 180 VWSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREVPT 234 Query: 228 ETCE 231 E Sbjct: 235 PPAE 238 >gi|317132092|ref|YP_004091406.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470071|gb|ADU26675.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 230 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDDK LA +EL LK + G G+ +F+E D I+LD L + G E Sbjct: 5 KVLVVEDDKRLARLLELELKHAGYESRCECDGTQGLRSVRFWEPDLILLDRMLPGMDGVE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R+ S P+ +L+ DKV GL SGADDYI+KPF EEL+AR+RA +R + Sbjct: 65 VCRNVRLFS-SVPILMLTAKGETVDKVEGLDSGADDYITKPFQMEELLARMRAALRGNDS 123 Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ L+V +L+++ TV I LT +E+ ++E + ++ LT+ L+H++ Sbjct: 124 PGQTPLLVVQNLTLDPFKHTVCRDDTEIELTKREFDLLEYMMRNRSIVLTRGQILDHVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E E I+DV+I LR K+ +A K + TV G GYVL + D Sbjct: 184 ETYEGEANIVDVYIRYLRGKMDDAFEPK-LLHTVRGVGYVLDKKNTD 229 >gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3] gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3] Length = 231 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D ++LD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQIISTYEVDLMVLDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RR Sbjct: 65 CQEMRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227 >gi|254445907|ref|ZP_05059383.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198260215|gb|EDY84523.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 223 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED + ++ L+ + V V G + +E+ + FD I+LDL L G Sbjct: 1 MRILIVEDQADILRHVKRALERADHEVSVAIDGPEAVEVVRERRFDLIVLDLSLPGFDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV++ + V +L+ I+D+V+GL +GADDY++KPF+ +EL+AR+ A+ RR Sbjct: 61 EVMKRISPMDARPRVLMLTARGEIDDRVKGLNAGADDYLTKPFDMKELLARVEALGRRVL 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +++ GD+ +++ + G RI L+ +E+ ++++L T ++ ++ Sbjct: 121 PGVDDNILEAGDVVLDVIHRVATRNGDRIELSPREFSLLQVLIREPGRTFSRGELFERIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E K +++F+ +LRKKL + G + IETV G GY L Sbjct: 181 GREQTYEAKTVEIFVMRLRKKL-DVPGKPSAIETVRGIGYKL 221 >gi|260904787|ref|ZP_05913109.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Brevibacterium linens BL2] Length = 219 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 12/222 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDIP 58 RIL++ED+ ++ I LK+ F VT++ DGI +L +FD ++LD+GL + Sbjct: 3 RILVVEDEARISAFIAKGLKAAGF---VTEIAADGITGRDLALTGDFDLLVLDIGLPGLD 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF VL LR + PV +L+ + +D + L+SGA DY+ KPF EL+ARIR ++ Sbjct: 60 GFSVLSQLRKDRPDLPVLVLTARDNADDTIFALESGAADYMIKPFRFGELLARIRLRLKE 119 Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + A Q+ +V GD+ ++L + V V I L+ +E + E+L + L++E L+H Sbjct: 120 TATEAPQTELVRGDVRIDLLKRQVWVADKIIDLSARELSLAEILLQNRGNVLSREQLLSH 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +P ++DV++ LRKKL G +++ TV G GY Sbjct: 180 VWGFDFDPGSNVVDVYVGYLRKKL-----GSDFVTTVRGFGY 216 >gi|75675389|ref|YP_317810.1| two-component transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74420259|gb|ABA04458.1| two component transcriptional regulator, winged helix family [Nitrobacter winogradskyi Nb-255] Length = 238 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + GE+G+ ++D +++D L G Sbjct: 15 MRLLIIEDDRESADYLVKAFREVGHIAELARDGEEGLSFADGGDYDVLVIDRMLPKRDGL 74 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR I TPV ILS + ++D+++GL++G DDY+ KP++ EL+AR+ + RR Sbjct: 75 SVIGCLREKGILTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRHG 134 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A ++L GDL ++ ++ V G + L +E++++E L +T+ M L +++ Sbjct: 135 GRAEETLYRVGDLELDRLSRRVARGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 194 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ + + T+ G GY++R Sbjct: 195 DYHFDPQTNVIDVHISRLRSKIDKGF-EQPLLHTIRGAGYMVR 236 >gi|322835012|ref|YP_004215039.1| transcriptional regulator [Rahnella sp. Y9602] gi|321170213|gb|ADW75912.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 233 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 13/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV V GE +E D ++LD+ + G E Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALEKID-NTIDLLLLDVMMPKKNGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRA++RRS Sbjct: 62 TLKELR-QRHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAMLRRSNW 120 Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 Q +L V G L +N + G + LTG E+ ++ LL+ +++ Sbjct: 121 SEQQQTNENNGSPTLEVDG-LQLNPGRQEASFNGEALDLTGTEFTLLYLLAKHLGQVVSR 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + R P + ID+ I LR+KL + G + +T+ GRGY++ Sbjct: 180 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRQDGHPWFKTLRGRGYLM 229 >gi|299144115|ref|ZP_07037195.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518600|gb|EFI42339.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 234 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 124/225 (55%), Gaps = 11/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ EDDKA+ SI + LK+ N++V G+D +E + E +I+DL + ++ G E Sbjct: 5 KILVAEDDKAIRDSIGIYLKNSNYDVIYAFDGKDALEKFRSNEIHLVIMDLMMPNVTGEE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +R K P+ ILS S DKV GL GADDYI+KPFN EL+AR+ + +RR Sbjct: 65 AILKIR-EKSYVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELMARVNSNIRRLYK 123 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + I G + +N KTV V G ++ LT EY+++ELL N + + Sbjct: 124 YQSKEENERYIEIGGIKLNTFEKTVFVDGEKVGLTSIEYKILELLMENPNRVFSIDEIYE 183 Query: 177 HLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +EP E K + V I ++R+K+ Y++ WG GY Sbjct: 184 KVW---NEPAIEAKTVTVHIRRIREKIEIDPKKPLYLKVAWGLGY 225 >gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 248 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ ++ YE D +ILD+ + G EV Sbjct: 22 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 81 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RR Sbjct: 82 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 140 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ + +I + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 141 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 200 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 201 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGY 244 >gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 228 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + ++ L+ ++ V G + IE K ++D ++LD+ + G E Sbjct: 3 KVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAIEKIKANDYDIVLLDIMIPVYTGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ ARI+AI+RRS Sbjct: 63 VCQMVREFS-NVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSNR 121 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ + V LD++ V V G ++LT KE+ ++ELL N ++ LN Sbjct: 122 KQAPAKPSNVMEINGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELLN 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + +DV + +LR+K+ G YI T WG GY + Sbjct: 182 TIWGDSYPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGYFFK 227 >gi|169630671|ref|YP_001704320.1| DNA-binding response regulator MtrA [Mycobacterium abscessus ATCC 19977] gi|169242638|emb|CAM63666.1| DNA-binding response regulator MtrA [Mycobacterium abscessus] Length = 225 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 118/218 (54%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD +LA + ++L+ E F V G + + D ++LDL L + G + Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFETAVVSDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + D V GL+SGADDYI KPF +ELVARIRA +RR+ Sbjct: 64 VCRVLR-SDSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRNDD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 L+ + +++ A V +G +I LT E+ ++ L+ + T+++ L ++ Sbjct: 123 EPAELLNIAGIDIDVPAHKVTREGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGY 220 >gi|172058611|ref|YP_001815071.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991132|gb|ACB62054.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 223 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D++++ H + L L+ E++ V GE+ ++L FD IILDL L D GF Sbjct: 1 MHILVVDDEESIRHLVRLQLEIEHYQVETAKSGEEALKLHATQSFDLIILDLMLPDTTGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR ++ P+ +L+ + DK+ GLQ GADDY++KPFN ELV R++ +++R Sbjct: 61 DLIPQLRSSQPDLPILMLTARDQMNDKIIGLQLGADDYMTKPFNGTELVLRVKNLLKRVV 120 Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 D + +D+ +T+ + G + LT +EY ++ L +E L + Sbjct: 121 QMTPKPFTVDDSFLTIDSAERTILLDGEPLPLTYREYALLALFLQHPKRVFEREELLEQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + +D+ + +LRKKL ++T++G GY Sbjct: 181 WGFDFSGQTRAVDIMVQRLRKKLGPQG---ERLKTIYGAGY 218 >gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Leuconostoc gasicomitatum LMG 18811] gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A++ ++ L+ + V + G+ EL FDAI+LDL L + G Sbjct: 3 KILVVDDEPAISTLLKYNLEQNGYQVTIATDGQSAYELIGEQTFDAILLDLMLPVMDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR KI+TPV +++ D+V GL+ GADDYI+KPF+ E++AR++A++RRS+ Sbjct: 63 VLKNLRQDKIATPVLLVTAKGDEFDRVFGLELGADDYITKPFSLREVLARLKAVLRRSQT 122 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I D+ ++ + K V G + LT +EY+++ S R + +E L Sbjct: 123 ERSTSDKPDVIEIQDIVIDDNKKVVTKSGKNLTLTPREYELLLYFSQRVGRVIDRETILT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E +++D+ I LR+K+ N ++TV G GY + Sbjct: 183 AVWGYEFVGESRMVDMHISNLREKVENNPKSPQILKTVRGFGYTM 227 >gi|229079179|ref|ZP_04211727.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|228704105|gb|EEL56543.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] Length = 229 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 3 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 63 VCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229 >gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM 20213] gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM 20213] Length = 234 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ+ +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ Y+ TV G GY Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 227 >gi|153955660|ref|YP_001396425.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856034|ref|YP_002473156.1| hypothetical protein CKR_2691 [Clostridium kluyveri NBRC 12016] gi|146348518|gb|EDK35054.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569758|dbj|BAH07742.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 239 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 121/225 (53%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILLI+D+ L +E +L+ E F ++ G DGI LCK + D ++LD+ + D+ GF Sbjct: 9 KILLIDDEIELLKLMETVLRKEGFKRIFKALKGTDGINLCKNEKPDIVVLDVMMEDMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV RA+R PV LS DK+ L GADDY++KPF+ +E+V RI+A +RR+ Sbjct: 69 EVCRAIREFS-YVPVIFLSARGDHIDKILALGLGADDYVTKPFSPKEVVFRIKAHLRRNI 127 Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 L I GDL ++ V G I LT KEY ++ ++ N LTKEM Sbjct: 128 YIKNELTMKKEKICFGDLIIDFKKGEVLKSGKNITLTPKEYHLLCYMTQNANQILTKEMI 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++ E I V + KLR+KL + YI TV G GY Sbjct: 188 CDEVWNDNYEGYDNTIMVHMRKLRQKLESNPSKPQYIVTVKGLGY 232 >gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 230 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+A ++ L+ + V V G + K +F+AI+LDL L ++ G Sbjct: 3 KILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR K+STP+ +++ D+V GL+ GADDYI+KPF+ E+VAR++A++RRS+ Sbjct: 63 VLKQLRQDKVSTPIILVTAKGDEFDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQV 122 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I DL +N KTV + + LT +EY ++ + R + +E L Sbjct: 123 STDTNKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETIL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E +++D+ I LR K+ + ++TV G GY + Sbjct: 183 TAVWGYEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGYTM 228 >gi|111024797|ref|YP_707217.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110823776|gb|ABG99059.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 225 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA + L++E F V V G DG+ + + FDAI+LD+ L G+ Sbjct: 1 MRLLVVEDERRLAAGLRKGLEAEGFAVDVVHNGTDGLWMARENPFDAIVLDIMLPGANGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR TP+ +L+ I D+V GL +GADDY++KPF+ L+AR+RA++RR Sbjct: 61 QVCRTLRNEGNWTPILMLTAKVGIWDEVEGLDTGADDYLAKPFSYAVLLARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ A+ V +G +I LT +E+ ++E L L K L H++D Sbjct: 121 RPRPTVLEVGDLRLDPSARRVWRRGEQIDLTTREFAVLEFLLRHPGEVLPKTDILGHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++V++ +LR KL IETV G GY L +A Sbjct: 181 FDFDGDPNIVEVYVRRLRTKLGRPT-DPPVIETVRGAGYRLVAHA 224 >gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis] Length = 238 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+ + +D+K + ++ LK E + V V GED + L + + +ILD+ + I G Sbjct: 4 IRVFIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R + P+ +L+ DK+ GL GADDYI+KPF+ E++ARI+A++RR Sbjct: 64 EVCRRMR-NHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK-E 172 SR QSLI L+++L TV G I LT KE+++++ + TK + Sbjct: 123 VLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQ 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +F N D E + ++ V I +LRKK+ +I+TVWG GY Sbjct: 183 LFRNAWSDQYIEDDNTVM-VHIRRLRKKIEPDPSDPQFIQTVWGIGY 228 >gi|227113247|ref|ZP_03826903.1| DNA-binding transcriptional regulator CpxR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 232 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 22/234 (9%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV V GE +++ D ++LD+ + G + Sbjct: 3 KILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQVLD-NTIDLLLLDVMMPKKNGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRKNT 167 Q GD S A T+EV G R++ LTG E+ ++ LL+ R Sbjct: 121 TDQQ--QAGDNS----APTLEVDGLRLNPGRQEASFDDIVLDLTGTEFTLLYLLAQRLGQ 174 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++E + R P + ID+ I LR+KL G + +T+ GRGY++ Sbjct: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLM 228 >gi|160945542|ref|ZP_02092768.1| hypothetical protein FAEPRAM212_03071 [Faecalibacterium prausnitzii M21/2] gi|158443273|gb|EDP20278.1| hypothetical protein FAEPRAM212_03071 [Faecalibacterium prausnitzii M21/2] Length = 236 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 6/231 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + I LK+ + GE I + + D ++LDLGL DI G EV Sbjct: 6 ILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAIMMTTSHNPDIMLLDLGLPDIDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R++R + P+ +LS S DK+ L +GADDY++KPF+ +EL+AR+R RR Sbjct: 66 IRSVRTWS-NLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLNLL 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G + V G L ++ A V + + +HLT EY+++ +L+ LT Sbjct: 125 ASDGINSPVFVNGPLKIDFSAGCVWLSENELHLTPIEYKLLCVLAHNVGKVLTHTSLTQK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ E ++ + V++ LRKKL + I+T G GY + DE Sbjct: 185 VWGSTQENDIASLRVYMASLRKKLERYPDAPHLIQTHVGVGYRMLRAENDE 235 >gi|26249400|ref|NP_755440.1| putative response regulator [Escherichia coli CFT073] gi|26109808|gb|AAN82013.1|AE016766_101 Putative response regulator [Escherichia coli CFT073] Length = 240 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 7 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 67 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 126 Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++++ G DL +N ++ V + ++ LT +E+ ++ + ++ L Sbjct: 127 MGQNILLAGGLICCHDLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + E ++ I +LR K+ A I+TVWG+GY Sbjct: 187 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 230 >gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 230 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L+ F V G I E D IILD+ L D+ GF Sbjct: 6 KILIVDDEPNIRDLLTTSLRFAGFAVRAVGSGAQTISAVLEEEPDLIILDVMLPDMNGFG 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 V + LR + ++P+ L+ EDK+ GL G DDY++KPF+ +E+VARI+AI+RR+ + Sbjct: 66 VTKRLRASGYTSPILFLTAKDDTEDKIMGLTVGGDDYVTKPFSLDEIVARIKAILRRTMQ 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++I GDL+++ D V + +I L+ E++++ L L N L+K L+H+++ Sbjct: 126 DDEETIIRAGDLTMDQDTHEVSIGSEQIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++ +I LR+KL + + I+T G GY+L+ Sbjct: 186 YDFNGDAGIVESYISYLRRKL-DIHTEEPLIQTKRGFGYMLK 226 >gi|56130780|ref|YP_145683.1| two component response transcription regulator [Ralstonia metallidurans CH34] gi|94152513|ref|YP_581920.1| regulator protein CopR [Cupriavidus metallidurans CH34] gi|10047062|emb|CAC07978.1| CopR protein [Ralstonia metallidurans CH34] gi|56068770|emb|CAI11332.1| two component response transcription regulator [Cupriavidus metallidurans CH34] gi|93358883|gb|ABF12970.1| CopR regulator from the two components sensor/regulator family involved in Cu(II)/Cu(I) resistance [Cupriavidus metallidurans CH34] gi|222875178|gb|EEF12309.1| predicted protein [Populus trichocarpa] Length = 228 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + L F V + G DG +D IILD+ L D+ G+ Sbjct: 1 MKLLVVEDEVKTGEYLRQGLTEAGFVVDLVANGLDGQHFAVNETYDLIILDVMLPDVDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L A+R + + PV L+ S+ D+VRGL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 HILHAIRASGNAVPVLFLTARDSVADRVRGLELGADDYLVKPFAFSELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A I DL ++L + G RI LT KE+ ++EL + R+ L + + + ++ Sbjct: 121 VQLAMDRIQVADLILDLSRRRASRGGRRITLTSKEFALLELFARRRGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +IDV I +LR K+ + K I+TV G GYVL Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDGFEVK-LIQTVRGMGYVL 221 >gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 256 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 25 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 85 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ+ +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGEAVFFPLKEFELLEYLMQNKGRVMTRHQ 203 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ Y+ TV G GY Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 249 >gi|322833041|ref|YP_004213068.1| transcriptional regulator [Rahnella sp. Y9602] gi|321168242|gb|ADW73941.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 225 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD L + + + L + +V D + + ++LDLGL D G Sbjct: 1 MKILLIEDDLDLGNGVRIALADQGLDVIWVRRKVDALHQLDACVPELVLLDLGLPDGDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR PV IL+ +++D++ GL +GADDY+ KPF EL+AR+RA+ RRS Sbjct: 61 SLMAYLRQQLKGIPVIILTARGTLQDRLCGLDAGADDYLVKPFVLAELLARVRALARRSY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +I LS+++ + V V + LT EY ++E L +R + LT+ FL Sbjct: 121 GFENEVIEIRGLSLHVPTRRVTVSARNVELTASEYALLETLMMRTDRVLTRR-FLEERIF 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E +DV + LR+K+ G Y+ TV G GYV+ Sbjct: 180 GAKENMSNALDVHMGNLRRKI-----GDGYVRTVRGVGYVI 215 >gi|313898763|ref|ZP_07832297.1| putative transcriptional regulatory protein CusR [Clostridium sp. HGF2] gi|312956345|gb|EFR37979.1| putative transcriptional regulatory protein CusR [Clostridium sp. HGF2] Length = 222 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 128/229 (55%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++A+A + L LK + GE G + + +D ++LD+ L I G+ Sbjct: 1 MRLLIVEDERAIAEVMMLNLKRVGYECEYAQDGEMGAAMVEKQSYDLVLLDIMLPKINGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ L A++ PV ++ S++D+V+GL GADDY+ KPF +EL AR+ +++RR Sbjct: 61 ELMEYL--AQLQIPVIFITAKGSVQDRVKGLHMGADDYLVKPFAVDELTARVESVLRRYH 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + V D++++ + VE + I LT KEY+++ L KN L ++ ++ Sbjct: 119 KSMQDIHVL-DVTIHTATRLVEKENRTIALTKKEYELLLYLVQNKNIALYRDTMYEKVWH 177 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + + +D+ I +LRKKL I+TV+ GY+L KDE Sbjct: 178 EEEFEQTRTLDLHIQRLRKKLD----WHRVIQTVYKIGYML--EVKDEV 220 >gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 234 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A+A ++ L+ + V V G + K +F+AI+LDL L ++ G Sbjct: 7 KILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDGMT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR K+STP+ +++ D+V GL+ GADDYI+KPF+ E+VAR++A++RRS+ Sbjct: 67 VLKQLRQDKVSTPIILVTAKGDELDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQV 126 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I DL +N KTV + + LT +EY ++ + R + +E L Sbjct: 127 STDTYKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETIL 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E +++D+ I LR K+ + ++TV G GY + Sbjct: 187 TAVWGYEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGYTM 232 >gi|330877751|gb|EGH11900.1| winged helix family two component transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965158|gb|EGH65418.1| winged helix family two component transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 221 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 16/231 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRILL+EDD + +I+ L N Y D +DG+ + +D ++LDLGL Sbjct: 1 MRILLVEDDPMIGEAIQGAL---NDASYAADWVKDGLLALTALDAQYYDLVLLDLGLPGK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R + P+ I++ S++D++RGL GADDY+ KPF+ EL+AR+RA++R Sbjct: 58 DGQAVLSNIRGQSNAVPLLIITARDSLDDRLRGLDGGADDYLLKPFDMAELLARMRAVLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEV---QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R G + L+ G V LD + E Q + L+G+E+ +++ L +R L++ Sbjct: 118 RKGGSGKPLLGNG--VVTLDPSSKEACTDQNPAVQLSGREFALLQALLIRPGAILSRADL 175 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +Y +E E ++ I LR+KL G + I+ V G G+++ +NA Sbjct: 176 EDRIYGWGNEVESNAVEFLIHALRRKL-----GSHVIKNVRGVGWMVSKNA 221 >gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 244 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V V G + + D ++LD+ + + G Sbjct: 14 RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATPPDLVVLDIQMPGMDGLT 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R LR + PV +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 74 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + GDL +NL + V + LT E+ ++E+ LT+E Sbjct: 134 AVAQQAADDEETLAFGDLRMNLATREVTRGDRAVELTRTEFTLLEMFLAHPRQVLTREQI 193 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A+G + TV G GYVLR Sbjct: 194 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEASGEPRLVHTVRGVGYVLR 240 >gi|313764887|gb|EFS36251.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL013PA1] gi|313815549|gb|EFS53263.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL059PA1] gi|314916347|gb|EFS80178.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL005PA4] gi|314917344|gb|EFS81175.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL050PA1] gi|314921948|gb|EFS85779.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL050PA3] gi|314930787|gb|EFS94618.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL067PA1] gi|314955091|gb|EFS99496.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL027PA1] gi|314959289|gb|EFT03391.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL002PA1] gi|315099638|gb|EFT71614.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL059PA2] gi|315102131|gb|EFT74107.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL046PA1] gi|327454381|gb|EGF01036.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL087PA3] gi|327456448|gb|EGF03103.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL083PA2] gi|328756141|gb|EGF69757.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL087PA1] gi|328758521|gb|EGF72137.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL025PA2] Length = 227 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 123/222 (55%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ +DD ++ + L + + V + G+ +E+ ++ D I+LDLG+ + G Sbjct: 1 MRILIADDDPQFLRALRITLGARGYEVLLARDGQHALEMAIDHKPDIILLDLGMPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V+ A+R S P+ ++SG S +KV L +GADDY++KPF+ +EL+ARIR + RR Sbjct: 61 KVIEAVR-GWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLTRRIG 119 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ G + V+L A TV G + LT E++++ELL + +T++ L+ Sbjct: 120 QDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTRQTMLSQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + ++I +LRKKL Y+ T G GY Sbjct: 180 VWGSEHVTDTGYLRLYISQLRKKLEPEPSRPRYLITDAGMGY 221 >gi|293394415|ref|ZP_06638714.1| two component response regulator [Serratia odorifera DSM 4582] gi|291423104|gb|EFE96334.1| two component response regulator [Serratia odorifera DSM 4582] Length = 225 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD L + + + L + +V D + + ++LDLGL D G Sbjct: 1 MKILLIEDDLDLGNGVRIALADQGLDVIWVRRKVDALHQLDACVPELVLLDLGLPDGDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR PV IL+ +++D++ GL +GADDY+ KPF EL+AR+RA+ RRS Sbjct: 61 SLMAYLRQQLKGIPVIILTARGTLQDRLCGLDAGADDYLVKPFVLAELLARVRALARRSY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +I LS+++ + V V + LT EY ++E L +R + LT+ FL Sbjct: 121 GFKNEVIEIRGLSLHVPTRRVTVSARNVELTASEYALLETLMMRTDRVLTRR-FLEERIF 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G E +DV + LR+K+ G Y+ TV G GYV+ Sbjct: 180 GAKENMSNALDVHMGNLRRKI-----GDGYVRTVRGVGYVI 215 >gi|281180069|dbj|BAI56399.1| two-component response regulator [Escherichia coli SE15] Length = 219 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + ++ G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELLRGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|210613371|ref|ZP_03289691.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787] gi|210151213|gb|EEA82221.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787] Length = 233 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 11/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GED + Y + I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTMMVHDGEDALSAFDTYAPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R ++ +TP+ +LS + DKV GL+ GADDYI KPF+ +EL+AR++A++RR + Sbjct: 66 VCRDIR-SRSNTPIIMLSAKGEVFDKVLGLELGADDYIIKPFDAKELIARVKAVLRRYQP 124 Query: 121 GHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G + S + +++NL +V V ++ + KE +++ L+ N T+E Sbjct: 125 GKSDSASDDKGKCVSYPGITINLTNYSVVVDNIQVEMPPKELELLYFLASSPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I ++R+K+ N + TVWG GY Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRIREKIKNHDTWG--LATVWGIGY 228 >gi|54308179|ref|YP_129199.1| putative two component response regulator transcription regulator protein [Photobacterium profundum SS9] gi|46912607|emb|CAG19397.1| Putative two component response regulator transcription regulator protein [Photobacterium profundum SS9] Length = 231 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 130/228 (57%), Gaps = 6/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ ++ L + V + G +G+ + +D IILD+ L + G+ Sbjct: 1 MKILIIEDEIKAGQYLKKGLTESGYTVDLASDGVEGLYHATSHSYDLIILDIMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 ++L+ LR +++STPV +L+ +ED+V+G + GA+DY+ KP+ EL+ARI+ + R Sbjct: 61 QILKTLRSSEMSTPVIMLTAKEQVEDRVKGFELGANDYVVKPYAFPELLARIQNVFRNHS 120 Query: 118 -RSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +S+ +QS IV DL +++ +T I LT KEY ++ELL ++ L++ Sbjct: 121 PKSKNISQSNTIVIADLQLDIIKRTATRNNQSITLTAKEYLLLELLMRKQGEVLSRTTIA 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D + + +IDV + +LR K+ + K I T+ G GY L + Sbjct: 181 SLVWDMNFDSDTNVIDVAVKRLRSKI-DRPFEKELIHTIRGMGYKLED 227 >gi|229083561|ref|ZP_04215892.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44] gi|228699758|gb|EEL52412.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44] Length = 238 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 14/229 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 +R+L+ +D+K + ++ L+ E +Y+ D+ DG E +E ++ IILDL + + Sbjct: 4 IRVLIADDEKEIRDLLKKYLERE---LYIVDIAVDGEEALHLFEQNKYNLIILDLMMPKV 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++ARI+A++R Sbjct: 61 DGIEVCRRLR-NKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSVNEVIARIKALMR 119 Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R + ++L+ L+++++ TV V I LTGKE ++++ + T Sbjct: 120 RFLVLGSNAGTQEKTLLTFKGLTIDVNKYTVNVNDAEISLTGKELELLKFFASNPEQVFT 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 180 KTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGY 228 >gi|332342732|gb|AEE56066.1| transcriptional regulatory protein PhoP [Escherichia coli UMNK88] Length = 223 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ ++ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S P+ +L+ S +DKV L +GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEMMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 >gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 296 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 65 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 124 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 125 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 183 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ+ +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 184 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 243 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ Y+ TV G GY Sbjct: 244 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 289 >gi|238922876|ref|YP_002936389.1| two-component system response regulator [Eubacterium rectale ATCC 33656] gi|238874548|gb|ACR74255.1| two-component system response regulator [Eubacterium rectale ATCC 33656] Length = 229 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+A + L+ F V V + G G+ +FD ILDL L I GFE Sbjct: 3 RILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKRIREKK-NTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S ++ + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 KEIWNMDSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRFK 228 >gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum subsp. longum BBMN68] gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum subsp. longum BBMN68] gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 234 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ+ +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ Y+ TV G GY Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 227 >gi|104783258|ref|YP_609756.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas entomophila L48] gi|95112245|emb|CAK16972.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas entomophila L48] Length = 224 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ A ++ L+ + V G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRLLIIEDEPRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYDLVILDVNLPELDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR A+ ST + +L+ + D+V+GL GADDY+ KPF EL+ARIR+++RR+ Sbjct: 61 GVLQRLR-AESSTRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H Q S + DL ++ G RI LT KE+ ++ LL + L++ ++ ++ Sbjct: 120 QHLQPSTLKVADLELDPGRHRAWRGGQRIDLTAKEFALLHLLMRQSGEVLSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFEDK-LIHTLRGVGYVL 220 >gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 239 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V+ G ++ + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKARDVRPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 +LR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ R Sbjct: 74 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRTGR 133 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + S + D+ ++ D V G + L+ E+ ++ + T L+K L+H Sbjct: 134 GAEEPKTSRLSFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G + + T+ G GYVLRE Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKIDT--GERRLLHTLRGVGYVLRE 237 >gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185] gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550] gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550] gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185] gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 231 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ ++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RR Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ + +I + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGY 227 >gi|318042529|ref|ZP_07974485.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 233 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD +A I + + E FNV G+ + + EF ILD + + G++V Sbjct: 10 ILVADDDVNIAQLISMECEEEGFNVESVHDGQQALLQLRQKEFQLAILDWDMPLMSGYDV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR + P+ +++ +ED+V+ L +GADDY+ KPFN EL+AR+RA+VRR+ Sbjct: 70 CQRLRDTGNTIPILMVTAKDEVEDRVKALDAGADDYLCKPFNIRELLARVRALVRRNSNT 129 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++L+ G LS+N V G IHLT +E+ ++ L + +++E + ++ Sbjct: 130 SNKKALLEYGALSINRPEHICSVNGKAIHLTVREFDLLSTLMEQPKQVISREQLITEVWG 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ ++D +I LR KL G+ I+TV G G+ LRE+ Sbjct: 190 EDYFGDITVVDTYIKYLRVKLRTHGLGE-MIQTVRGVGFTLRES 232 >gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 226 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 126/222 (56%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F+V V G + + + D ++LDL L + G E Sbjct: 3 RLLVVEDEESFSDALSFMLEREGFDVAVAADGLAALTEFERHGADLVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RALR + + PV +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR RG Sbjct: 63 VCRALR-QRSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRR-RG 120 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G + ++++ V V G + L KE++++E+ LT+ ++ Sbjct: 121 EIDERVTATLEAGPVRMDVERHVVTVAGASVPLPLKEFELLEMFLRNAGRVLTRGQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ G ++ TV G GY Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRTKIEGEPGNPRHLVTVRGLGY 222 >gi|226364471|ref|YP_002782253.1| OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226242960|dbj|BAH53308.1| OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 238 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 9/219 (4%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G D + + DA++LD+ + I G V+ ALR P Sbjct: 21 SLERGLRLSGFTVLTAVDGADALRVVSEQRPDAMVLDMNMPVIDGTGVVTALRAMSNDIP 80 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSL 126 +C+LS +++D++ GL+SGADDY+ KPF EL+ARIRA++RR + A Sbjct: 81 ICVLSARDTVDDRISGLESGADDYLVKPFVLAELIARIRAMLRRHGTTTAAPADSQATPP 140 Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186 I G L + A+ V + G + LT +E++++E+L+ L++E L ++ + Sbjct: 141 IRVGALEIRTSARRVFMAGEEVTLTKREFELLEVLARNVGIVLSRERLLELVWGYDFVAD 200 Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++DVF+ LR+K G + TV G G+VLRE + Sbjct: 201 TNVVDVFVGYLRRKF-EVGGQPRILHTVRGVGFVLREPS 238 >gi|315652944|ref|ZP_07905910.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315484802|gb|EFU75218.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 235 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A I L L E + + GE + ++ + ++LDL L I G++ Sbjct: 6 RILIVDDDENIAELISLYLMKECYETKIVGDGESALNDFDEFKPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK TPV +LS + DKV GL+ GADDY+ KPF+ +EL+AR++A++RR Sbjct: 66 VCREIR-AKSGTPVIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRYNS 124 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ + DL VN+ V G + + KE +++ LS N T+E Sbjct: 125 STITVPELHNGGEYVEYPDLVVNMTNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L++++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 185 QLLDNIWGYEYIGDTRTVDVHIKRLREKIHDNQFWS--ISTVWGIGY 229 >gi|301056178|ref|YP_003794389.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378347|gb|ADK07251.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ +++ IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 256 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 25 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 85 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ+ +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ Y+ TV G GY Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 249 >gi|156740962|ref|YP_001431091.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232290|gb|ABU57073.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 236 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 5/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ AL + L L+ E F+V G + + + + D +ILDL + ++ G+E Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVILDLMMPEMGGYEF 63 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LRA AK S TPV +L+ DK+ GL+ GADDY++KPFN EL+ARIRA++RR++ Sbjct: 64 LRAF--AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ D+ ++ +TV V G I LT E+ ++ L ++ L+ + Sbjct: 122 APLEPDVLRAADIVLDRTGRTVRVGGRYIDLTPSEFAILATLMAAPGQVFSRLDLLDRVS 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + IDV I LR K+ + YIETV+G GY Sbjct: 182 GDAFEGSERTIDVHIRNLRAKIEDDPRNPRYIETVYGMGY 221 >gi|161830121|ref|YP_001597079.1| transcriptional regulatory protein [Coxiella burnetii RSA 331] gi|161761988|gb|ABX77630.1| transcriptional regulatory protein [Coxiella burnetii RSA 331] Length = 223 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-FDAIILDLGLTDIP 58 MR+LL+EDD+ L I LK + +V D L +E FD IILDLGL Sbjct: 1 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +VL+ +R TPV IL+ +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR Sbjct: 61 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ A+ +I GD++++ + V ++ + + +E+ +++ L +++E L Sbjct: 121 SKERAKPIISHGDITLDPASHVVTLKKKEVMVARREFALLQKLLENAGRVISREQLNQTL 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 Y + + ++V I LRK+ G I T+ G GY++ + ++ Sbjct: 181 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSE 223 >gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 228 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 13/226 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDIPG 59 IL+++DDK + H I + L++E T E+ +E L K E FD IILD+ + ++ G Sbjct: 5 ILIVDDDKEIRHLISVYLENEGLK---TSQAENALEALGKLEEQAFDLIILDIMMPEMDG 61 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E +R + P+ +LS S DK++GL SGADDYISKPFN EL+AR+++ +RR Sbjct: 62 IEACMKIREEQ-HMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRRY 120 Query: 120 RGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + +++IV G L +N D + V G I LT KE+ ++ELL+ K ++ Sbjct: 121 KKYNTESEADKNVIVIGSLEINTDTRLVYAGGKEIRLTPKEFDILELLARNKGIVMSVSK 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R+K+ YI+T+WG GY Sbjct: 181 IYESVWKEDLLKSDNTVMVHITKIREKIEEDPKHPIYIKTIWGVGY 226 >gi|237794328|ref|YP_002861880.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229261381|gb|ACQ52414.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 228 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G +GIE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 R +R + + +L+ ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR + Sbjct: 64 CRIIRQSS-DVHIFMLTAKGTLNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +LI G LS++ D + V+V G + +T E+ ++ L K L++E +N ++ Sbjct: 123 NSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222 >gi|331003642|ref|ZP_08327137.1| hypothetical protein HMPREF0491_01999 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412269|gb|EGG91662.1| hypothetical protein HMPREF0491_01999 [Lachnospiraceae oral taxon 107 str. F0167] Length = 225 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ LA S++ + + ++ G +G+EL +F FD ++LDL L + GF Sbjct: 1 MNILVVEDEVLLASSLKEIFEECGYSTICAYDGMEGLELARFSHFDILVLDLMLPKLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR K P+ +L+ S I D+V GL SGAD Y++KPF++ EL+A + A++RR + Sbjct: 61 QVARTLRKEKNGLPILMLTAKSDILDRVEGLDSGADYYLTKPFDRRELLACVNALLRR-Q 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G+ ++++D+ + + I L+ KE+QM+ LL ++K +FL ++ Sbjct: 120 GKEVNQISYGNTTLDIDSGELISGENSIRLSSKEFQMMRLLLKEGKNNISKNLFLEKIWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V+I LRKKL + + I + G GY L Sbjct: 180 YDSDATENNVEVYIGFLRKKLKTLSSDISIIAS-RGLGYHL 219 >gi|329938744|ref|ZP_08288140.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329302235|gb|EGG46127.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 249 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 125/225 (55%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ ++ + + L+ E + + G+ + + + DA++LDL L D+ G Sbjct: 23 VRVLVVDDELSITELLSMALRYEGWRIRSAGDGQGAVRAAREFRPDAVVLDLMLPDMDGL 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L LR PV L+ + ED++ GL +G DDY++KPF E++VAR+R ++RRS Sbjct: 83 SALGRLRRELPDVPVLFLTAKDAAEDRIAGLTAGGDDYVTKPFGVEDVVARLRGLIRRSG 142 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +++V GDL ++ D+ V G IHLT E++++ L L+K L+ Sbjct: 143 AADRRSDAVLVVGDLILDEDSHEVSRGGTDIHLTATEFELLRFLMRNPRRVLSKAQILDR 202 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LR+K+ AG + I T G GY+++ Sbjct: 203 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 245 >gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 234 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 12/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTEL 121 Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 QSL + GDL + DA + G + LT +E++++ L+ +T+ Sbjct: 122 IAVDNQEEDSKLQSLQI-GDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 181 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233 >gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 256 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 25 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 85 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ+ +V GD+++ + V V+G + KE++++E L K +T+ Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ Y+ TV G GY Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 249 >gi|215919141|ref|NP_820222.2| transcriptional regulatory protein [Coxiella burnetii RSA 493] gi|206584025|gb|AAO90736.2| transcriptional regulatory protein [Coxiella burnetii RSA 493] Length = 232 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-FDAIILDLGLTDIP 58 MR+LL+EDD+ L I LK + +V D L +E FD IILDLGL Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +VL+ +R TPV IL+ +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ A+ +I GD++++ + V ++ + + +E+ +++ L +++E L Sbjct: 130 SKERAKPIISHGDITLDPASHVVTLKKKEVMVARREFALLQKLLENAGRVISREQLNQTL 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 Y + + ++V I LRK+ G I T+ G GY++ + ++ Sbjct: 190 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSE 232 >gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ ++ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RRS Sbjct: 64 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123 Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A S IV GDL + D + ++ LT KE++++ L K LT+ Sbjct: 124 AAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ N YI+T+ G GY L E +E Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPVYIKTIRGLGYKLEEPKMNE 240 >gi|227532872|ref|ZP_03962921.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189477|gb|EEI69544.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 241 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +LL+ED+ ALA S+ + EN +V G + + L K E + IILD L + GF Sbjct: 13 LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R + P+ +L+ I DKV GL GADDYI+KPF EELVAR+ +R +R Sbjct: 73 SVLRKIRQSS-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNR 131 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ DL V+ D K V+ + LT +EY+++ L ++ +++ L+ + Sbjct: 132 QAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + I+DV+I LR K+ + +G K I TV G GY+L N Sbjct: 192 WETDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 237 >gi|147678005|ref|YP_001212220.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274102|dbj|BAF59851.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 233 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 7/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL ++D+ + ++ L E F V G D +++ + + D IILD+ L ++ G++V Sbjct: 4 ILAVDDEANILELLKFNLSKEGFQVISATNGPDAVKIAREKKPDLIILDVMLPEMDGYDV 63 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 L+ L+ + + TPV ILS + DKV GL+ GADDYI+KPF+ E+VAR++A +RR Sbjct: 64 LQKLKADRETAVTPVIILSAKTEEVDKVLGLELGADDYITKPFSPREVVARVKARLRRKS 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ A+ I G L + + + G ++ LT KE++++ LL+ T+++ L Sbjct: 124 APPAKQEARKEIRIGSLVIRPEKYEAVLDGKKLELTPKEFELLHLLADNPGRVFTRDILL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ E + +DV I LR+K+ YIETV GY R+ + Sbjct: 184 EKIWGYDHARETRTVDVHIRYLRQKIEKDPAKPKYIETVRSVGYRFRDTS 233 >gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1] Length = 232 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD + I L + V G G+ + DA++LDL L + G + Sbjct: 6 RVLVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGLWWAVEHAPDAVVLDLMLPGMDGLQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + P+ +L+ + ED+VRGLQ GADDY+ KPF+ ELV RI +++RRS Sbjct: 66 VCRELRARRPQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRRSAP 125 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ +V G L V+ + + G + LTG+E+ ++ L T+ L ++ Sbjct: 126 EAATVGPVVDGGLVVDRSGQRAHLDGVPLALTGREFDLLAFLVAHPGRAFTRTELLAEVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G + + + V + +LR+KL I T+WG GY Sbjct: 186 -GWEYGDQSTVTVHVRRLREKLEIDPNRPRRIATIWGTGY 224 >gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 233 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD AL + L++ F V G +E + +E D I+LD L I G E Sbjct: 10 RVLIVDDDDALVGVLAEYLRAAGFVTSVAGDGLGAVERTRSWEPDLIVLDRMLPGIDGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A P+ +L+ + + +D++ GL+ GADDY++KPF+ ELV RI++++RR+ G Sbjct: 70 VTRRVR-AICDAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRRALG 128 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A S G L ++ + V G + LT +E+ ++ L + ++E L H++ Sbjct: 129 PLSAPSDATAGPLDLDGARRRVTRDGDVVPLTTREFDLLAFLMRHPDRAFSREELLEHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G ++ + V + +LR K+ + ++TVWG GY+LR Sbjct: 189 -GWTFGDLSTVTVHVRRLRAKIEDDPTRPRIVQTVWGVGYLLRSEP 233 >gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 241 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 12/225 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+KA+ ++ L+ E + V G+ +E + + FD I+LDL L + G Sbjct: 7 RILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHSFDLIVLDLMLPKLSGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R S P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA++RR+ Sbjct: 67 VCRAVRETS-SVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRRAHA 125 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 A+ ++ GDL +++ V V+G + LT E++++ L+ T+ E Sbjct: 126 EAEPQLEVLDFGDLVIDISGHKVMVEGSEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L + ++G + + ID + LR KL + ++ TV G GY Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGY 226 >gi|299535842|ref|ZP_07049163.1| KDP operon transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298729042|gb|EFI69596.1| KDP operon transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 235 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD A+A+ I++ L + ++ + G ++ + D ILDLGL DI G E Sbjct: 4 RILVVEDDVAIANLIKMTLATNHYEFDIARDGNSALQKALTIKPDVFILDLGLPDIDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R TP+ ++S DK+ L +GADDY++KPF+ EEL+ARIR +RR Sbjct: 64 LITKIRSWN-QTPIIVVSARGEEHDKINALDAGADDYVTKPFSVEELLARIRVALRRM-A 121 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q L G L +N TV V G IH+T EY+++ +LS LT L Sbjct: 122 YEQPLEKENPIFTNGYLQINYVDHTVFVNGKEIHVTPIEYKLLIVLSKNVGKVLTHNYIL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKDE 228 ++ + +V + VF+ LRKK+ I+T GY +LR + +DE Sbjct: 182 KEIWQNALQSDVPSLRVFMATLRKKIEVNPAQPKLIQTHVRVGYRMLRYHEEDE 235 >gi|262370731|ref|ZP_06064056.1| transcriptional activator protein CusR [Acinetobacter johnsonii SH046] gi|262314531|gb|EEY95573.1| transcriptional activator protein CusR [Acinetobacter johnsonii SH046] Length = 226 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILL+ED++ ++ L Y+TD DG+ E+D IILD+ L + Sbjct: 1 MRILLVEDEQKTGDYLKQGLSEAG---YITDWVTDGLTGKHQALSEEYDLIILDVMLPGL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ ++ +R + S P+ L+ IED+V+GL+ GADDY+ KPF EL+ARI+ ++R Sbjct: 58 SGWNIINDIRSSGKSMPILFLTARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLR 117 Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + ++I DL ++L + V G RI LT KE+ ++EL R+ L + + + Sbjct: 118 RGQQREDNNIIKIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIAS 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +++V I +LR K+ + K I+ + G GYVL Sbjct: 178 QIWDMNFDSDTNVVEVAIKRLRNKVDSNFTPK-LIQNIRGMGYVL 221 >gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 223 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 10/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 RIL+++D++ + + + + L E + V + GE G++L FYE FD +ILD+ L G Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKL--FYEKPFDLVILDVMLPKKDG 65 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + +LR ++ TPV +L+ ED+V G + GADDYI+KPFN + L+AR+++++R++ Sbjct: 66 WSILREIK-KYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKT 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S+I GDL +N + +V I L KEY ++ L L++E LN ++ Sbjct: 125 NNMVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ID I LRKK+ GKN I+T+ G GY L Sbjct: 185 GYDFLGDDRTIDTHIKNLRKKI-----GKNAIKTIRGIGYKL 221 >gi|229043767|ref|ZP_04191467.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] gi|229069548|ref|ZP_04202837.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|228713687|gb|EEL65573.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|228725568|gb|EEL76825.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] Length = 232 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 6 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 66 VCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|50085995|ref|YP_047505.1| regulator of kdp operon (transcriptional effector) [Acinetobacter sp. ADP1] gi|49531971|emb|CAG69683.1| regulator of kdp operon (transcriptional effector) [Acinetobacter sp. ADP1] Length = 237 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 128/218 (58%), Gaps = 3/218 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ + +++ L+++ + V+V + G G+E+ D +ILDLGL D+ G EV Sbjct: 11 ILIIDDEPQIRKFLDIALRAQGYAVHVAETGMKGLEILASQGADLLILDLGLPDMDGAEV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R PV +LS + K++ L +GA+DY++KPF+ +EL ARIR + R+ Sbjct: 71 LKEMRQWS-QIPVIVLSARPDEQQKIKLLDAGANDYVTKPFSIQELCARIRVMFRQQPSQ 129 Query: 123 AQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +V G L V++ +V++ G + LT KE+Q++ LL + +T++ L+ L+ Sbjct: 130 SEHNLVFNDGQLFVDVAEHSVKLAGDDVVLTKKEFQLLALLIRHQGKIVTQKQILSELWG 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218 E + + + + KLR KL ++A +YI TV G G Sbjct: 190 ITHEEDTHYLRILVKKLRTKLGDSALQPHYIFTVAGIG 227 >gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 280 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D ++L E D ++LD+ L G E Sbjct: 51 KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 110 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 111 VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 169 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 170 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 229 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 230 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 279 >gi|229494209|ref|ZP_04387972.1| two component transcriptional regulator, winged helix family [Rhodococcus erythropolis SK121] gi|229318571|gb|EEN84429.1| two component transcriptional regulator, winged helix family [Rhodococcus erythropolis SK121] Length = 237 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ ALA + L E F V + G + + +E I+LDL L G E Sbjct: 13 RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGLE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + V +LS DKV GL +GADDY+ KPF ELVAR++A++RR R Sbjct: 73 VCRRIRTFSDAY-VLMLSARGDESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRA 131 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++L L +++ A+TV V + LT E+ ++ L+ R + ++ + + Sbjct: 132 SSMLPEALPTPPGLDIDVLARTVHVDNRPVDLTPTEFALLSALATRPDAAWSRADIIASV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+DV + LR+KL + A +I TV G GY LR + Sbjct: 192 WGSPWFGDQHIVDVHVRALRRKLGDDATDPRFIRTVRGVGYSLRSS 237 >gi|228914595|ref|ZP_04078204.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844914|gb|EEM89956.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 232 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE +++ + D +LD+ L + GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEGALQILCEHTVDVALLDVMLPGMDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +A+R + +L+ EDKV+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G +N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|229169399|ref|ZP_04297109.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621] gi|228614162|gb|EEK71277.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621] Length = 229 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEYSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|15891165|ref|NP_356837.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15159516|gb|AAK89622.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 229 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D+ + + + L ++ + V + +EL + + D ++LDLGL D+ G Sbjct: 6 VRILIVDDEPPIRKLLRVGLSTQGYAVSEAMNAKVAMELVREDKPDLVVLDLGLPDVSGH 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 ++L R ++ PV ILS + VR L+ GADDYISKPF ELVARIR +R Sbjct: 66 DLLEKWRSDGLALPVIILSSRTDEAGIVRALELGADDYISKPFGMNELVARIRVALRHRL 125 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++G + + TGDLSV+L + V+V+ + L+ KEY ++ +L LT L H Sbjct: 126 QTQGE-KPVFQTGDLSVDLVRRIVKVEDREVKLSPKEYDILRVLVQHAGKVLTHRFLLEH 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D + +V+ + V++ +LR+K+ YI T G GY L+E Sbjct: 185 VWD--ELTDVQYLRVYVRQLRQKIEKLPDQPRYILTETGVGYRLQE 228 >gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2] Length = 251 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 14/234 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + L+ F+V G + + L + D ++LD+ L D+ GF V Sbjct: 13 LLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTNPDLLVLDVMLPDMDGFTV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R LR ++ PV L+ DK+ GL G DDY++KPF+ EE+VARIRA++RR+R Sbjct: 73 TRRLRQIGMNAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTRSL 132 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++I+ GDL ++ D V G I L+ E++++ L L N L+K L+H++ Sbjct: 133 EDEENAVIMAGDLELDDDTHEVRRSGILIDLSPTEFKLLRYLMLNTNRVLSKSQILDHVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKL-----SNAAG------GKNYIETVWGRGYVLR 222 + + I++ +I LR+K+ ++AAG I+T G GY+LR Sbjct: 193 EYDFGGDTGIVESYISYLRRKIDVTPETDAAGHPVEMEWTPMIQTKRGVGYMLR 246 >gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125] gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125] Length = 238 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 132/227 (58%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + +++ L+ E ++V G++ +E +++D I+LDL + ++ G E Sbjct: 6 KILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALAFDYDVILLDLMMPEMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCQKLRKQK-ATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSS 124 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A+ ++V LS++ DA V V I+LT KEY+++ L+ + ++E Sbjct: 125 TKFLQTDTQAKDVLVFPHLSIDNDAHRVTVADQEINLTPKEYELLYYLAQSPDKVFSREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219 L +++ +++ +D I +LR+KL+ + + I TVWG GY Sbjct: 185 LLKDVWNYDFFGDLRTVDTHIKRLREKLNRVSPQAASMISTVWGVGY 231 >gi|301017928|ref|ZP_07182553.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300399923|gb|EFJ83461.1| response regulator receiver domain protein [Escherichia coli MS 69-1] Length = 239 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 6 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 66 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125 Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++++ G DL +N ++ V + ++ LT +E+ ++ + ++ L Sbjct: 126 MGQNILLAGGLICCHDLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + E ++ I +LR K+ A I+TVWG+GY Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 229 >gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 132/225 (58%), Gaps = 9/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K LA ++ L E F V V G DG+ + +D I+LD+ L + G+ Sbjct: 1 MRVLLVEDEKRLADLLKGGLAGEGFAVDVAHDGRDGLWMASENVYDVIVLDVMLPRMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR A+ TP+ +L+ + D+ L +GADD++SKPF+ L+AR+RA++RR Sbjct: 61 TVCARLRDAENWTPILMLTAKDGVHDEAEALDTGADDFLSKPFSYVVLLARLRALIRRG- 119 Query: 121 GHAQSLIVT-GDLSVN---LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A+ + +T GDL+V+ L + EV+ I LT KE+ ++ L+ R ++K L Sbjct: 120 GRARPVSITVGDLTVDPAGLRCRRGEVE---IALTPKEFAVLHGLARRPGEVVSKSELLA 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + I++V+I LR+K+ ++ G++ + TV G GY L Sbjct: 177 QAWDFSYDGDPNIVEVYISALRRKI-DSPFGRSSLVTVRGAGYRL 220 >gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271] gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271] Length = 231 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D ++LD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMVLDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RR Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227 >gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] Length = 233 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|325663722|ref|ZP_08152126.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087242|ref|ZP_08336312.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470215|gb|EGC73448.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium 4_1_37FAA] gi|330408928|gb|EGG88389.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 230 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A I L L+S+ + VY GE+ +E K + D ILD+ L I GF Sbjct: 1 MNILVVDDEKEIADVIALYLQSDQYTVYPFYTGEEALECMKTTKIDLAILDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+L+ +R + + PV +L+ + DK+ GL GADDYI KPFN EL+AR++A +RR Sbjct: 61 EILKKIR-ERYTFPVIMLTAKTEYIDKITGLTLGADDYILKPFNPLELIARVKAQLRRYT 119 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKE 172 +R + +I L +N ++ ++ LT E+ ++ +L + + ++E Sbjct: 120 QYNEGTRTDSGDIIDFAGLQLNRESHECVYNEKQLTLTPIEFDLLWMLCENRGKVISSEE 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +F N + + + V I LR+K+S G ++I+TVWG GY + E Sbjct: 180 LFENVWKEKYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVEE 230 >gi|325288662|ref|YP_004264843.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964063|gb|ADY54842.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 225 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA ++ +++ E ++V G G++ + +D I+LD+ L G+ Sbjct: 1 MRILIVEDEIRLAEALTQIMRQEKYSVDAVHDGAAGLDYARSGLYDVIVLDIMLPKKNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ LR AKI+TP+ +L+ + DK+ GL GADDY++KPF EEL+ARIRA+ RR Sbjct: 61 EIVNELRTAKITTPILLLTARDEVNDKIMGLDFGADDYMTKPFVPEELLARIRALSRRHG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL++NL A T+ + L KEY+++++L + KE + ++ Sbjct: 121 EVILEELSFADLTLNLAAYTLVCGPKSVRLGYKEYEVLKILMSNPKVIVLKEDLIIKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ +I LRKK G K I TV GY L Sbjct: 181 IESNAEDNNVEAYISFLRKKFF-YLGSKVNISTVRKVGYRL 220 >gi|322806184|emb|CBZ03752.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 229 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + ++V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFEDQGYSVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 VCQNIR-DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I G L+++L+++ V + I LT KE+ ++ELL+L +KE + Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + I K+R K N+I TVWG GY Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGY 222 >gi|298695354|gb|ADI98576.1| two component sensor protein [Staphylococcus aureus subsp. aureus ED133] Length = 231 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD A+ H +++ L + +NV + + + D I+LDLGL D G Sbjct: 4 KILIIEDDHAITHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLC 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R P+ ++S + ++ L +GA+DY++KPFN +EL ARIR I R ++ Sbjct: 64 LISEIR-QHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H ++ IV G LS++ +K+V + H +HLT E+ ++ELL+ K LT EM L +Y Sbjct: 123 HQETNIVFTNGLLSIDFGSKSVVINNHEVHLTPNEFSLLELLANHKGKVLTYEMILKRIY 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219 ++ E+ + V + LR+KLS K+ I+T GY Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGY 223 >gi|240145644|ref|ZP_04744245.1| KDP operon transcriptional regulatory protein KdpE [Roseburia intestinalis L1-82] gi|257202265|gb|EEV00550.1| KDP operon transcriptional regulatory protein KdpE [Roseburia intestinalis L1-82] Length = 267 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 128/228 (56%), Gaps = 2/228 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLI++D ++++ I ++ EN+ +Y+ G+ G+E+ D I++D +D+ G Sbjct: 11 KILLIDEDTSISYLIRRAMEKENYKIYIAGSGKQGMEMSTGVCPDLILMDNKFSDMEGIT 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI-RAIVRRSR 120 +++ R P+ ILS SS DKV L +GADDY+ KPF+++EL ARI A+ RR Sbjct: 71 LIQWFR-EWTDCPIIILSERSSYLDKVEALYAGADDYMVKPFHEKELAARIFSALRRRIS 129 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G+L V+ + V + G +H + EY++IE L+L T +T +M L ++ Sbjct: 130 VGAHTYYEAGNLKVDFTKRQVLLGGTEVHFSPVEYRIIESLALNSGTVVTYQMLLEKIWG 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E +I+ V + +RKK+ ++ YI T+ GY + E+ ++ Sbjct: 190 PYAEQNSRILRVNMTNIRKKIESSPLEPEYITTIPRVGYRMLESQAEK 237 >gi|254382225|ref|ZP_04997586.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194341131|gb|EDX22097.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 227 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD ++ + L L+ V + GEDG+ L + + ++LDL L I G + Sbjct: 3 RVLLIEDDPSIREGVGLGLRRRGHEVSAAETGEDGLALMASFRPELVLLDLMLPGINGVQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R + P+ +L+ D V GL++GADDYI KP E + AR++A++RR Sbjct: 63 VCRRIRESS-QVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEVIEARVKAVLRRLST 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + G+L+++ TV +G R+ L E +++ LS +++ L ++ Sbjct: 122 PAGSRPEVEFHGELAIDRAGLTVAKRGERVPLAPSEIKLLLHLSASPEHVFSRQQLLEYV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +D + +++D + +LR K+ N AG YI+TV G GY Sbjct: 182 WDHSYHADARLVDACVRRLRTKIENPAGSPRYIQTVRGFGY 222 >gi|71907917|ref|YP_285504.1| two component transcriptional regulator [Dechloromonas aromatica RCB] gi|71847538|gb|AAZ47034.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 221 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 122/227 (53%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +I+ LK ++ G+ + +D ++LDLGL G Sbjct: 1 MRVLLVEDDFMIGEAIQGALKDASYAADWVKNGQTALTTLGCQHYDLVLLDLGLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL ++R P+ I++ + D++RGL GADDY+ KPF EL+AR+RA++RR Sbjct: 61 EVLTSIRAKDNPVPLLIITARDGLNDRLRGLDGGADDYLLKPFEMAELLARMRAVLRRKG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV---QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G+A S++ G V+LD T E + L+ +E+ +++ L +R L++ + Sbjct: 121 GNATSVLSNG--VVSLDPATREAAVNNSASVQLSNREFALLQALLVRPGAILSRSDLEDR 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y +E E ++ I LR+KL G I+ V G G+++ +N Sbjct: 179 IYGWGEEVESNAVEFLIHALRRKL-----GGEVIKNVRGVGWMVSKN 220 >gi|298244272|ref|ZP_06968078.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551753|gb|EFH85618.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRILL+ED + L H +++ L E Y D DG+E F E +D +ILD+ L Sbjct: 1 MRILLVEDHRRLNHELQMSLVDEG---YAVDTAFDGVEGQAFAESTPYDVLILDILLPGK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +V R LR I+TP+ +L+ ++ D+VRGL SGADDY+ KPF EL+AR+RA++R Sbjct: 58 DGLQVCRDLRRQHINTPILLLTARDTVADRVRGLDSGADDYLIKPFALSELLARLRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ +++ GDLS++ V+ G RI LT + + ++E L N LT+EM NH Sbjct: 118 RNGAEKSAVLCVGDLSLDPATHVVKRAGQRIELTPRLFALLEYLMRHPNQILTREMIANH 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + ++V + +LR ++ A K +ETV G GY L Sbjct: 178 IWSYEFTGTLNAVEVCMRRLRCQVDEAFPIK-VLETVRGVGYRL 220 >gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037] gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037] Length = 235 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 Q L + GDL + DA + G + LT +E++++ L+ +T Sbjct: 122 VSVDSQESDEKKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|266623167|ref|ZP_06116102.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288865034|gb|EFC97332.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 235 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 13/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A IE+ L++EN +VY GE+ + +FD ILD+ L DI G Sbjct: 4 KILIVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDISGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +++R + + PV +L+ DK+ GL GADDYI+KPF ELVAR++A +RR + Sbjct: 64 ICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKK 123 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + A + L++N+ + G + LT E+ ++ +L R+ + ++ E Sbjct: 124 YNVGAVVPAANEIFKYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAEE 183 Query: 174 FLNHLYDGRDEPEVK---IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ ++E K I V I LR+K+ + YI+TVWG GY + E Sbjct: 184 LFHEVW--QEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKIGE 234 >gi|206890413|ref|YP_002248447.1| two-component response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742351|gb|ACI21408.1| two-component response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 214 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 8/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD+ L S+E LK ENF + YEFD I++DL L G Sbjct: 1 MKILLVEDDRVLGESLEEYLKLENFETLWLWDERKLPNVLNVYEFDVIVIDLILNYSRGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R I TP+ IL+ +EDK GADDY++KPF +ELV R+ A+ +R Sbjct: 61 DLITFIREKGIKTPILILTAKKRVEDKETCFLRGADDYLTKPFEPKELVLRLLALSKRK- 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H S+I GD+S+N+D K + I L+ + ++ L RK + KE LN+++ Sbjct: 120 -HIDSMINIGDISINIDTKIILKGSKEIKLSKTAWDLLTLFVKRKGEIIDKETILNYVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G+ E ++I +I +LRK L I+ GRGY L Sbjct: 179 GKAVGE-EVIRAYIKELRKVLPEGT-----IQNYKGRGYKL 213 >gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 239 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 R+L++EDD +A + + L E ++V G+ G+ L + +DA++LD+ L + G Sbjct: 5 RVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRLLEQDGPWDALVLDVMLPGVDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + R P+ I+S S ++ GL+ GADDY++KPF+ ELVAR+RA++RR+ Sbjct: 65 QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124 Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQS I G L ++ A+T V G+ + LT +E+ ++ + + + Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LN ++ + + ++ I +LR K+ + TVWGRGY L + A Sbjct: 185 LNQVWGYQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKLVDPA 235 >gi|168182887|ref|ZP_02617551.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182673991|gb|EDT85952.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 228 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G +GIE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 R +R + + +L+ ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR + Sbjct: 64 CRIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +LI G LS++ D + V+V G + +T E+ ++ L K L++E +N ++ Sbjct: 123 NSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222 >gi|75910544|ref|YP_324840.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704269|gb|ABA23945.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 236 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+ L + +L E + V G+ G E+ +D +ILD L G Sbjct: 7 MRILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLPGKTGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR TPV L+ +++D+V+GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 67 EICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSS 126 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL ++ + + QG I L+ KE Q+++ LT L Sbjct: 127 SQTYEATPGRLTVADLELDCENQVAYRQGRVIELSQKESQLLQYFMEHTGQLLTHAQILQ 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 HL++ + P +I I LR+K+ + I TV+G+GY Sbjct: 187 HLWEDNEPPNSNVIAALIRLLRRKI-EVGKELSLIHTVYGKGY 228 >gi|291302704|ref|YP_003513982.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571924|gb|ADD44889.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 242 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + ++ E + Y G ++L + + DA+ILD+ L D+ G Sbjct: 17 IRVLVVDDEAPLAELLSMAVRYEGWQAYTAGDGTAALKLAREHRPDAVILDIMLPDMDGL 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL L TPV L+ ++ED+VRGL +G DDY++KPF+ EE++AR+R ++RRS Sbjct: 77 SVLDRLHADAPETPVLFLTAKDAVEDRVRGLTAGGDDYVTKPFSLEEVLARLRNLLRRSG 136 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + S + GDL++N D V G I LT E++++ L L+K L+ Sbjct: 137 AARANRASALTVGDLTLNEDTHEVSRAGEDIPLTATEFELLRYLMRNPRRVLSKAQILDR 196 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + +++++I LR+K+ AG I T G GY+L+ Sbjct: 197 VWNYDFGGQANVVELYISYLRRKID--AGRPPMIHTRRGAGYILKPG 241 >gi|256371502|ref|YP_003109326.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256008086|gb|ACU53653.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 236 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++D++ L S++ L +E F V G G+++ + +D I+LD+ L + GF Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + TP+ +L+ D+ L +GADD + KPF+ LVARIRA++RR+ Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL+++ + V I LT +E+ +ELL K L K+ + H++D Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + I++V+I LRKK+ G K I T+ G GY L E+ Sbjct: 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKA-ITTIRGVGYRLEEDG 224 >gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae TIGR4] gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54] gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP-BS293] gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP14-BS292] gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS397] gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS457] gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS458] gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae] gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae] gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54] gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP14-BS292] gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP-BS293] gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS458] gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS457] gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS397] gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570] gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301] gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317] gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368] gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901] Length = 234 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS+ Sbjct: 63 VAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 121 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 122 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ +V+ +DV + +LR+K+ + YI T G GY +R NA Sbjct: 182 HLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 234 >gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87] gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87] Length = 233 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGNDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|304397248|ref|ZP_07379127.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308186446|ref|YP_003930577.1| Response regulator [Pantoea vagans C9-1] gi|304355397|gb|EFM19765.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308056956|gb|ADO09128.1| Response regulator [Pantoea vagans C9-1] Length = 222 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + L+ V D ED E F + D ++DLGL D Sbjct: 1 MRVLVVEDNALLRHHLAVQLRDMGHQV---DAAEDAKEADYFLREHLPDIALVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + P+ +L+ + KV L++GADDY++KPF+ EE+ AR++A++R Sbjct: 58 DGMSLIRRWRSDAVRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ GHA +I V+L + + V + LT EY ++E L ++K+ + Sbjct: 118 RNSGHASQIIDMAPFQVDLSRRELTVNEEPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIL-ALHPTDVIATVRGQGY 218 >gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] Length = 241 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ G++ +L + I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 65 ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSA 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 NSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + I+TVWG GY A DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEVKASDEPT 240 >gi|158334884|ref|YP_001516056.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305125|gb|ABW26742.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 241 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 127/230 (55%), Gaps = 13/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-----ELCKFYEFDAIILDLGLTD 56 +ILL++D+ L ++ +LK E ++V V + GE + ++ + +D +ILD L Sbjct: 3 QILLVDDEVELTDALGRLLKREGYSVDVANDGEAALLAVQQKIDQGQLYDLLILDWMLPK 62 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G EV + LR TPV L+ +++D+V+GL +GADDY+ KPF EL+AR+RA++ Sbjct: 63 LSGIEVCQELRSQSQLTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALL 122 Query: 117 RRSRGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RRS +Q+ I L ++L+++ QG I L+ KE Q++ L + L Sbjct: 123 RRSEQFSQTSPEALFQRIQMEGLELDLESQIAYCQGQAITLSEKESQLLTYLMQHPHQLL 182 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 T + HL+ D+P ++ I LR+K++ A I T++G+GY Sbjct: 183 THDQIYQHLWPSGDQPSSNVLAAQIRLLRRKIA-AKNSPPLIHTIYGKGY 231 >gi|148379888|ref|YP_001254429.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148289372|emb|CAL83468.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 228 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + + V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR+ A +RR + Sbjct: 63 VCQKIR-DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I+ G L+++L+++ V + I T KE+ ++ELL+L +KE + Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQIFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + I K+R K + N+I TVWG GY Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGY 222 >gi|29375184|ref|NP_814337.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|227517526|ref|ZP_03947575.1| response regulator [Enterococcus faecalis TX0104] gi|255973653|ref|ZP_05424239.1| response regulator [Enterococcus faecalis T2] gi|257085933|ref|ZP_05580294.1| response regulator [Enterococcus faecalis D6] gi|307278346|ref|ZP_07559424.1| putative KDP operon transcriptional regulatory protein KdpE [Enterococcus faecalis TX0860] gi|21693347|gb|AAM75294.1|AF454824_91 EF0091 [Enterococcus faecalis] gi|29342643|gb|AAO80408.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|44933340|gb|AAS49390.1| response regulator [Enterococcus faecalis] gi|227075046|gb|EEI13009.1| response regulator [Enterococcus faecalis TX0104] gi|255966525|gb|EET97147.1| response regulator [Enterococcus faecalis T2] gi|256993963|gb|EEU81265.1| response regulator [Enterococcus faecalis D6] gi|306504986|gb|EFM74178.1| putative KDP operon transcriptional regulatory protein KdpE [Enterococcus faecalis TX0860] gi|315027615|gb|EFT39547.1| putative KDP operon transcriptional regulatory protein KdpE [Enterococcus faecalis TX2137] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD + +E++L E + + + G + + + FD ++LDLGL DI G ++ Sbjct: 5 ILLIEDDPNITDFMEVVLGQERYQLTIASTGMEALTAFQTTSFDLVLLDLGLPDIDGIDL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR ++ P+ I+S ++ E+KV+ L GADDY++KPF EL+ARIR +R Sbjct: 65 LKILR-KRMHLPIIIISARNNEEEKVKALDLGADDYVTKPFGTNELLARIRTALRHQNVQ 123 Query: 123 AQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +SL V DL ++ + + V +G IHLT EY+++ L+ + + + + ++ Sbjct: 124 TESLTVVENKDLKIDFEKQLVYKKGQEIHLTKNEYRILALMFRQLGKVVAYQTLMTKVW- 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G + + + V + +RKK+ + Y+ T G GY LR++ Sbjct: 183 GPYSNDSQTLRVNMSNIRKKIESNTLKPEYLITEIGVGYRLRDH 226 >gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 241 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 131/238 (55%), Gaps = 10/238 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ + G + + +++ I+LDL L ++ G V Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEANDGNEAYRMAMEHDYACILLDLMLPEMDGITV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 65 ASKLREHK-ETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQVA 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ LI L ++ DA V G +++LT KEY+++ L+ N +E Sbjct: 124 TAEQSEPHARDLIEFDHLVIDNDAHRVLADGSQVNLTPKEYELLIFLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETCE 231 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + +E+ + Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFEIKSNNESTQ 241 >gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC 35311] gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC 35311] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 ++++D+K ++ ++ L E + VY GE+ +E E D ++LDL L + G EV Sbjct: 1 MVVDDEKPISEIVKYNLVKEGYEVYTAFDGEEALEKVTEVEPDLVLLDLMLPKMDGLEVA 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R +R + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 61 REIR-KTYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRREASSV 119 Query: 124 ------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 QS + GDL+++ DA V G I LT +E++++ L+ +T+E L Sbjct: 120 KEEAGNQSELTIGDLTIHPDAYMVSKAGENIELTHREFELLYYLARHLGQVMTREHLLQT 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV + +LR+K+ ++ Y+ T G GY LR Sbjct: 180 VWGYDYFGDVRTVDVTVRRLREKIEDSPSHPGYLVTRRGVGYYLR 224 >gi|196228091|ref|ZP_03126958.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227494|gb|EDY21997.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 226 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 111/224 (49%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL +DD S+ L+ E F G + + L + + D + LD+ + + G+ Sbjct: 1 MTILLADDDPITLDSLRACLEPEGFTALAARHGGEALALWEKHRPDLLCLDIMMPQVDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R A PV LS S D V GLQ GADD+I KPF K EL+ARIRA +RR Sbjct: 61 EVCRRVRAADAQVPVLFLSAKSEEIDVVVGLQLGADDFIRKPFGKHELLARIRAALRRVH 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +R + DL V E G I L+ +E ++ELL + + ++ LN Sbjct: 121 ARSNGVRSFAMHDLVVYPRELRAERAGATIDLSPREAGILELLHEKTGQVVDRDTLLNRC 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + PE + +D I KLRK++ G IETV G GY R Sbjct: 181 WGMDYFPESRTLDQHIAKLRKRIEPDPGNPTIIETVRGVGYRYR 224 >gi|145294404|ref|YP_001137225.1| hypothetical protein cgR_0359 [Corynebacterium glutamicum R] gi|140844324|dbj|BAF53323.1| hypothetical protein [Corynebacterium glutamicum R] Length = 222 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL EDD +A I L E F +T+ G + +FD ++LDLGL + G + Sbjct: 3 KILLAEDDAGIADFIVRGLIREGFECEITESGAEAFARAHSGDFDLMVLDLGLPHMDGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR +++ P+ +L+ ++IED++R L+ GADDY+ KPF EL+ARI+ +R ++ Sbjct: 63 ILEQLRNLQVTLPIIVLTARTNIEDRLRTLEGGADDYMPKPFQFAELLARIK--LRLAKH 120 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 AQ ++ GD+ ++L + V + G L+ +E ++E L L++ L Sbjct: 121 TAQESPTDARVLRNGDVELDLRTQRVLIDGSWHDLSRREVDLLETLMRHPGQILSRAQLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D +P ++DV++ LRKK+ G + IETV G GY LR Sbjct: 181 RLVWDMDWDPGSNVVDVYVRALRKKI-----GAHRIETVRGSGYRLR 222 >gi|75909575|ref|YP_323871.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703300|gb|ABA22976.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 250 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54 RIL++ED++ + + + L+ E + V G +E K +E FD +ILDL L Sbjct: 20 RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFEPNGGDFPFDLVILDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR P+ +LS S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 IVRRSR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR R ++ D+++N V V+G ++L+ KE++++EL ++ Sbjct: 140 LLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGY 247 >gi|329888261|ref|ZP_08266859.1| response regulator [Brevundimonas diminuta ATCC 11568] gi|328846817|gb|EGF96379.1| response regulator [Brevundimonas diminuta ATCC 11568] Length = 223 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 2/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+DD + L+ + V GE G+ + + AI++D + +PG E Sbjct: 1 MLVIDDDARTRAFVAEGLRQQGHTVDEAGDGEAGLHMAMEGAYAAIVVDRMMPGLPGLEA 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121 ++A+R + TPV +L+ + S++D+V GL +GADDY+ KPF EL AR++A+VRR Sbjct: 61 VQAMRAGGLKTPVLMLTALGSVDDRVAGLNAGADDYLVKPFAFSELSARLQALVRRPPLA 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + DL V++ A G + LT E++++E L+ +T+ M L L+ Sbjct: 121 EATTRHRVADLEVDVAAHRATRAGRTLDLTPHEFKLLERLARNAGHAVTRTMLLESLWGF 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P +ID I +LR K+ + I T+ G GYVL+ Sbjct: 181 HFDPRANLIDAHISRLRAKVDRGF-DQELIHTIRGVGYVLK 220 >gi|329297168|ref|ZP_08254504.1| DNA-binding transcriptional regulator PhoP [Plautia stali symbiont] Length = 222 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MR+L++ED+ L H + + L+ V D ED E F + D ++DLGL D Sbjct: 1 MRVLVVEDNALLRHHLAVQLRDMGHQV---DAAEDAKEADYFLQEHIPDIALVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R I P+ +L+ + KV L++GADDY++KPF+ EE+ AR++A++R Sbjct: 58 DGMSLIRRWRGDAIRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ GHA +I V+L + + V + LT EY ++E L ++K+ + Sbjct: 118 RNSGHASQIISMPPFQVDLSRRELTVNDAPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIL-ALHPTEVINTVRGQGY 218 >gi|325261323|ref|ZP_08128061.1| DNA-binding response regulator KdpE [Clostridium sp. D5] gi|324032777|gb|EGB94054.1| DNA-binding response regulator KdpE [Clostridium sp. D5] Length = 244 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 127/233 (54%), Gaps = 7/233 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K + + +LK + V D G++ + L D I+LDLGL DI G + Sbjct: 7 VLIIEDEKNILTFVSKVLKKHEYKVLCADTGKEALSLIGSQCPDIILLDLGLPDIDGSSI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 +R +R A STP+ ++S S+ ++KV L GADDYI+KPF EL+ARIR +R S R Sbjct: 67 IREVR-AWSSTPIIVISARSAEKEKVAALDLGADDYITKPFGTSELLARIRTSLRHSNRL 125 Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +S + G + ++ + + + G IHLT EY+++ L+ +T L+ Sbjct: 126 YTESSLYIRPYQCGSMLLDFSKRILTIDGEEIHLTPIEYKIVAYLAQNSGKVITYAAILS 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +++ + + KI+ V + +R+KL YI T G GY ++E+ D T Sbjct: 186 NVWGPYADSDNKILRVNMANIRRKLEKDPAQPQYIYTEVGVGYRMKEDEFDIT 238 >gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17] gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17] Length = 234 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++G Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ +V GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 122 AVEASGAVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ Y+ TV G GY Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGY 227 >gi|301632265|ref|XP_002945211.1| PREDICTED: phosphate regulon sensor protein phoR-like [Xenopus (Silurana) tropicalis] Length = 501 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/202 (36%), Positives = 116/202 (57%), Gaps = 1/202 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD+ LA + L++ V V E + L +EFD +ILDLGL + G Sbjct: 139 MRILIAEDDQVLADGLLRTLRASGAVVDRVASGTEADMVLMMAHEFDLLILDLGLPKMHG 198 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VL+ LR + PV IL+ S+E +V+GL GADDY++KPF+ +EL AR+RA+ RR Sbjct: 199 LDVLKRLRDRGSALPVLILTAADSVEKRVKGLDFGADDYMAKPFSLQELEARVRALTRRG 258 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +++ G L + V + G + L+ +E ++E+L R ++KE + L Sbjct: 259 MGATSAIVKHGPLVYDQAGHVVSIDGKMVELSARELGLLEVLLQRVGRLVSKEQLVELLC 318 Query: 180 DGRDEPEVKIIDVFICKLRKKL 201 + +E I+V++ +LRKK+ Sbjct: 319 EWGEEVSYNAIEVYVHRLRKKI 340 >gi|296161178|ref|ZP_06843987.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295888519|gb|EFG68328.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 224 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD+ + +I LK + V +V D + +E D ++LDL L G Sbjct: 1 MRILLVEDDEMIGGAIVQALKDAAYAVDWVCD-ADSATGALIGHEHDVVLLDLNLPKRDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VLR+LR PV IL+ S++D++ GL +GADDY+ KPF EL+ARIRA+ RR Sbjct: 60 IDVLRSLRAKGSKAPVIILTARDSLDDRIAGLDAGADDYLVKPFEIGELLARIRAVTRRL 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + + +G+L+++ + +LTG+E+ ++ L ++ T L++ +Y Sbjct: 120 GDHGDARMTSGNLTLDSNTHLAVYGDTECNLTGREFALLSALMMKPGTVLSRSELERKVY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E ++V I +RKKL G + I V G G+++ Sbjct: 180 AWEEQVESNAVEVVIHGIRKKL-----GASVIRNVRGVGWLV 216 >gi|160915022|ref|ZP_02077235.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991] gi|158432821|gb|EDP11110.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991] Length = 232 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED++ + I LK N+ + T G + IEL +FD +I+D L + G E Sbjct: 10 KILLIEDEENIRKIIAYDLKKANYEIVETGDGREAIELAGSNDFDVLIIDWMLPHVSGIE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ LR K + + +L+ D + + G DDYI+KPF+ EL+AR+ A ++R +G Sbjct: 70 IVERLRERKNDSIMIMLTARDDETDILHAFEKGVDDYITKPFSPRELLARVNAHLKRRKG 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +V GD+ ++L +++ ++ + LT KE+ ++E K L+++ LN ++ Sbjct: 130 REEPRLVFGDICMDLKRRSILLKEQELELTKKEFDLLEYFISNKEVVLSRDNILNEIWGF 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+DV + KLR KL+N+ I+++ G GYV+ E Sbjct: 190 DYDGDTRIVDVHVFKLRSKLANS---NIQIKSMRGIGYVIEE 228 >gi|120611930|ref|YP_971608.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590394|gb|ABM33834.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 230 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 117/233 (50%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58 MRILL+EDD L+ ++ L+ V + ED FDA++LD+ L P Sbjct: 1 MRILLVEDDPVLSRTMAQGLERAGHRVELAQNVEDARHWWAVQPFDAVLLDINLPHGPQA 60 Query: 59 ------GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 G LR+ R TPV +LS S E+++ GL +GADDY+ KP+ +E+ AR+ Sbjct: 61 RSGLGNGLAALRSARARGDRTPVLVLSARDSTEERIAGLDAGADDYLGKPYELKEVEARL 120 Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RA+ RR+ G L+ G L ++ A+ V + L +E++++ L L+K Sbjct: 121 RALARRTTGSG-DLVTVGRLQLDRQARRCSVDAQALELPAREFELLWELMTPPGRVLSKS 179 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L DG + ++ F+ +LR+KL AG I T+ G GY L E+A Sbjct: 180 DLSQRLSDGGEALGDNALESFVSRLRRKL---AGSGAVIRTLRGLGYTLEEDA 229 >gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU121] Length = 233 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E ++V+ G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVNDATNEISIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|269836941|ref|YP_003319169.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269786204|gb|ACZ38347.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 240 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 128/229 (55%), Gaps = 14/229 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPG 59 I+++ED++ LA +E L+ E V V G +E E D I+LDL L ++ G Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 E+ R +R +KI TP+ +L+ S+ D+V GL+ GADDY++KPF+ EL AR+ AI+RR Sbjct: 64 LEICRRVRQSKI-TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122 Query: 119 ------SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 SR + I GDL+++ ++ V +G +HLT KE+ ++ LL+ ++ Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182 Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L+ ++ G D V + +D I +LRKKL I T+WG GY Sbjct: 183 DYLLHRVW-GEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGY 230 >gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17] gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17] Length = 237 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ L+ E + V + GE+ + L +++ IILDL + + G Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VARI+A++RR Sbjct: 64 EVCRRLR-NKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122 Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S Q +L+ L+++++ V V G I LTGKE ++++ + TK Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTIWGIGY 228 >gi|227551905|ref|ZP_03981954.1| response regulator [Enterococcus faecium TX1330] gi|257886932|ref|ZP_05666585.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257895504|ref|ZP_05675157.1| transcriptional regulator [Enterococcus faecium Com12] gi|257898119|ref|ZP_05677772.1| transcriptional regulator [Enterococcus faecium Com15] gi|293378369|ref|ZP_06624538.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293571527|ref|ZP_06682550.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|227178977|gb|EEI59949.1| response regulator [Enterococcus faecium TX1330] gi|257822986|gb|EEV49918.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257832069|gb|EEV58490.1| transcriptional regulator [Enterococcus faecium Com12] gi|257836031|gb|EEV61105.1| transcriptional regulator [Enterococcus faecium Com15] gi|291608393|gb|EFF37692.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|292643233|gb|EFF61374.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 234 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G +G+EL FD IILD+ L + G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYKVTSAADGGEGLELALEQSFDFIILDVMLPTMDGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR K TP+ +L+ D++ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIEP 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 QS + G ++ +L V V H I LT KE++++ RK+ + ++ Sbjct: 123 RKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDTL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ + +I+DV + LR+K+ Y+ TV G GY +E + Sbjct: 183 LDRIWNFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKFQEPKR 234 >gi|110798796|ref|YP_695638.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168206916|ref|ZP_02632921.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209543|ref|ZP_02635168.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213967|ref|ZP_02639592.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168215963|ref|ZP_02641588.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|110673443|gb|ABG82430.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170661678|gb|EDT14361.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712327|gb|EDT24509.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714590|gb|EDT26772.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|182381636|gb|EDT79115.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + + +L+ E F V G +G +F++FD ++LDL L I G Sbjct: 7 ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R K +TP+ ++S +++EDK+ L+ GADD+ISKPF+ E++AR+ A++RRS+ Sbjct: 67 IEEIRKIK-NTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S I +L + ++ V+V+G I LT KE++++ELL TK + Sbjct: 126 NSSEGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + I+V I LR K++ +YI+T+WG G+ Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGF 226 >gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 120/219 (54%), Gaps = 6/219 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A+A I L L+ + F V+V G G++ + A++LD+GL + G EV Sbjct: 5 VLVVEDEPAIADLIRLYLRKDGFGVHVEHDGAAGLDAVRRLAPVAVVLDVGLPGLDGVEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR A TPV ++ D++ GL+ GADDY++KPF+ ELVAR+R ++RRS Sbjct: 65 CRRLRAADDWTPVLFVTARDDEVDRILGLEMGADDYVTKPFSPRELVARVRTVLRRSGTG 124 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + ++ G++ V +D + V + LT E+ ++ L +++ L+ ++ Sbjct: 125 APREEVLRVGEVEVQVDRRRVRAGTTEVALTATEFALLAHLMRAPGRVYSRDQLLSAVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +DV + +LR KL +A + I TV G GY Sbjct: 185 YTASSGARTVDVHVAQLRAKLGDA----SPIRTVRGVGY 219 >gi|325676260|ref|ZP_08155939.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325552821|gb|EGD22504.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 233 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++DD + S+ L+ F + D G + DAI+LD+ + + G Sbjct: 9 RILLVDDDPKVLSSLTRGLRLSGFELDTADDGASALRAVSESRPDAIVLDVNMPVLDGVS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV-ARIRAIVRRSR 120 V+ ALR P+C+LS S++ D++ GL++GADDY++KPF ELV + R R Sbjct: 69 VVTALRAMGNDVPICVLSARSTVGDRIAGLEAGADDYLTKPFELGELVARLRALLRRAPR 128 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + VT G L V+L + V + G RI LT +E+ ++E+L+ L++ L ++ Sbjct: 129 TPAPAGTVTVGPLEVDLPGRRVHMGGERIDLTKREFDLLEVLAENAGIVLSRVRLLELVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++DVF LR+KL A G + TV G G+VLRE Sbjct: 189 GYDFDADTNVVDVFATYLRRKL-EAGGRPRVLHTVRGVGFVLREQP 233 >gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159] gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159] Length = 253 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 5/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD LA + L+ ++V+ G I L + D IILDL L I G + Sbjct: 20 RILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAIMLARTIRPDLIILDLMLPGIDGRD 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 V R +R S P+ +L+ S +D V Q GADDY+ KPF EL ARI A++RRS Sbjct: 80 VCRLIRKWS-SAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLRRSAE 138 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +++ G L + D V +G +HL +E+ ++ L R T++ L+ ++ Sbjct: 139 TTAGNVLTAGTLVIFRDEHRVVYRGREVHLAPREFALLTALVERAGRVCTRQELLDLVW- 197 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY--VLRENAKDET 229 G+D +++ +DV I ++R+ L G N I TV G GY V A DET Sbjct: 198 GQDVVDLRNVDVHIHRIREALGGEPDGSNLIRTVHGIGYRFVPELAAMDET 248 >gi|115375150|ref|ZP_01462417.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|310823133|ref|YP_003955491.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115367801|gb|EAU66769.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|309396205|gb|ADO73664.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 240 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 116/220 (52%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILLIEDD A + L V G++G+ + +D +++D L + G Sbjct: 16 LRILLIEDDAQTAEYVRRGLTELGQLVDHAQDGQEGLLMATGGHYDVLVIDRMLPKLDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR A I TP L+ M SI+D+V+GL+SG DDY+ KPF EL ARI ++ RR Sbjct: 76 TLLRMLREAHIRTPTLFLTAMGSIDDRVKGLESGGDDYLVKPFAFSELYARICSLGRRPP 135 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q++ DL ++L +TV G + L E++++E L +T+ M L H++ Sbjct: 136 LQDVQTVFTLADLEMDLIKRTVTRSGKTLDLQPTEFRLLEYLLRHAGRAVTRTMLLEHVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +P+ I++ I +LR KL I TV G GY Sbjct: 196 NFHFDPKTNIVETHISRLRAKLDRGF-TPELIHTVRGVGY 234 >gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] Length = 239 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 10/234 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++ + ++ L E + + G ++L + FD I+LD+ L + G EV Sbjct: 5 VLLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEHFDFILLDIMLPQLDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R I+TP+ ++S DKV L+ GADDY++KPF+ EL+AR++AI+RR+ Sbjct: 65 CKRIRAKGITTPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAILRRTEKD 124 Query: 123 A--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +V G L V D V ++LT KEY+++ L N TLT+E Sbjct: 125 QTDDNDLSDEQWVVNG-LRVFPDRHEVYKDNDMLNLTPKEYELLLYLIKHPNMTLTRERL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ E +++DV I KLR+K+ + +I+T+ G GY +E KDE Sbjct: 184 LERIWGYDFGQETRLVDVHIGKLREKVEDDPKNPKFIKTIRGYGYKFKE-LKDE 236 >gi|284037439|ref|YP_003387369.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283816732|gb|ADB38570.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 230 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD+ +A +I L+ + + V G +G ++ D +ILD+ L I GFE Sbjct: 3 KILIIEDDRRIAQNISRTLQEDGYATEVVYEGINGRQMALQPGVDLLILDINLPGINGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R++R K + P+ +L+ + IEDKV GL GADDY+ KPF+ EL+AR+ A +RRS Sbjct: 63 VCRSVRAEKPNLPIIMLTALGEIEDKVEGLGLGADDYLVKPFDIRELIARVEACLRRSTL 122 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +L+V+ ++ V+ I LT +E+ ++E L + + K Sbjct: 123 LEEMTAEPEKVWRVANLTVDSASREVKRGETTIDLTAREFALLEYLIRNRGRVMAKLDIT 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ +P +++V+I LRKK+ K I T G GYVL+E Sbjct: 183 EQVWNLNFDPTTNVVEVYINYLRKKIDRDFEPK-LIHTRPGMGYVLKE 229 >gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL 4222] gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar sotto str. T04001] gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar sotto str. T04001] gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL 4222] Length = 237 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL +DDK + + +++ L+ E + V GE+ + L ++ +ILDL + I G Sbjct: 4 IRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLRY-KTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ + L+ NL+ TV I+LTGKE ++++ + TK Sbjct: 123 VLGSSNTAQQKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 183 LFQNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228 >gi|254413738|ref|ZP_05027507.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179335|gb|EDX74330.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 227 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+ L + +LK E + V V G+ G +L ++D +ILD L G Sbjct: 1 MRILLVDDEVELTDPLSRVLKREGYEVDVAYEGQSGRQLAMQSDYDLLILDWMLPHQSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR +TPV L+ +++D+V GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 ELCQQLRSQGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELLARVRALLRRSA 120 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +A + L ++++ + G I L+ KE Q+++ LT Sbjct: 121 ATETNAPVRLRVASLELDVENQLAYRNGRLIELSEKETQLLDYFMRHSGQLLTHGEIYQQ 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+ ++P ++ + LR+K+ A G I TV+G+GY L E + Sbjct: 181 LWQDEEQPSSNVLAALVRLLRRKI-EAPGEAPLIHTVYGKGYRLGEGS 227 >gi|167034787|ref|YP_001670018.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166861275|gb|ABY99682.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 227 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD +A I L ++ V D + + +FD +ILDLGL D G Sbjct: 1 MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR + PV +L+ ++ D+V GLQ+GADDY+ KPF+ EL AR+ ++RR Sbjct: 61 KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G L + + + G + L+ +E +++ L L+ E + +Y Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL N +ETV G GY L Sbjct: 181 FSDEVESNALNVHIHHLRRKLGN-----GIVETVRGLGYRL 216 >gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 128/224 (57%), Gaps = 9/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + +E+ L++E +NV+ GE+ +++ + E I+LD+ + + G EV Sbjct: 4 ILVVDDEKEIRNLLEINLRNEGYNVFKASCGEEALDILEKEEIHLIVLDIMMPHMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K + P+ +LS S DK++G+ +GADDY+ KPFN+ EL+ R++A++RRS Sbjct: 64 CRRVR-EKYNIPILMLSAKSEDMDKIQGIMTGADDYVCKPFNQLELIVRVKALMRRSYFL 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + V+ DL + +++ ++ H+ + LT +E++++ LL+ + + E Sbjct: 123 NLKMQVSEDL-IRIESMVIDKSKHKVTIDDKEVDLTAREFEILYLLATNRGIVFSAEEIF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V + +LR K+ + G I T+WG GY Sbjct: 182 EKVWKERYYQSNNTVMVHMSRLRDKIEHHMEGNKIIHTIWGVGY 225 >gi|187731798|ref|YP_001881793.1| DNA-binding transcriptional regulator QseB [Shigella boydii CDC 3083-94] gi|187428790|gb|ACD08064.1| transcriptional regulatory protein QseB [Shigella boydii CDC 3083-94] Length = 219 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRQGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis Uo5] gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis Uo5] Length = 235 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDI 121 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 Q L + GDL + DA + G + LT +E++++ L+ +T Sbjct: 122 VSVDSQESDEKKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|209519930|ref|ZP_03268711.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209499632|gb|EDZ99706.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 221 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +I+ LK ++ G+ + +D ++LDL L G Sbjct: 1 MRVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLSLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R P+ I++ ++D++RGL GADDY+ KPF EL+ARIRA++RR Sbjct: 61 EVLVRIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVLKPFQMAELLARIRAVLRRKG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A + G LS++ K V G + L+ +E+ +++ L +R L++ + +Y Sbjct: 121 GSAAPALSNGVLSLDPATKEASVSGGSPLQLSNREFSLLQALLVRPGAILSRSELEDRIY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E ++ I LR+KL G I+ V G G+++ ++A Sbjct: 181 GWGEEVESNAVEYLIHALRRKL-----GSEVIKNVRGVGWMVSKDA 221 >gi|254417772|ref|ZP_05031496.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196183949|gb|EDX78925.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 223 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD A ++ L +V G G+ + +D ++D + + G Sbjct: 1 MRILVVEDDAEAATAMVRGLSEAGHDVTHAVDGAFGLLESQKGGYDVYVVDRMMPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ +R TPV LS + +ED+V GL++GADDY+ KP+ EL+AR+ A+ RR Sbjct: 61 GMVETVRKGGDQTPVLFLSALGEVEDRVTGLKAGADDYLVKPYAFAELIARVEALSRRRE 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q+++ GDL +NL A+TV I L +E+Q++E L ++T+ M L ++ Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRGATEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P+ +IDV I +LR K+ + ++TV G GY L Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGF-DRAMLQTVRGAGYRL 221 >gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 239 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 7/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60 R+L++EDD +A + + L E ++V G+ G+ L + +DA++LD+ L + G Sbjct: 5 RVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + R P+ I+S S ++ GL+ GADDY++KPF+ ELVAR+RA++RR+ Sbjct: 65 QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124 Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQS I G L ++ A+T V G+ + LT +E+ ++ + + + Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LN ++ + + ++ I +LR K+ + TVWGRGY L + A Sbjct: 185 LNQVWGYQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKLVDPA 235 >gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 226 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++DD A++ + ++L +E F+ V VTD G +E + + D I+LDL L + G Sbjct: 4 KILVVDDDPAISEMLTIVLSAEGFDTVAVTD-GALAVETAEREQPDLILLDLMLPGMNGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ RA+R + P+ +L+ + D V GL+SGADDY++KPF +ELVARIRA +RR+ Sbjct: 63 DICRAIR-QDSAVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRRTD 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL++++ TV+ I LT E+ ++ L+ + T+E L ++ Sbjct: 122 DEPAETLEVGDLTIDVPGHTVKRGDEEISLTPLEFDLLLELARKPQQVFTREELLGKVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGY 220 >gi|15925069|ref|NP_372603.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927654|ref|NP_375187.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus subsp. aureus N315] gi|21283732|ref|NP_646820.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus subsp. aureus MW2] gi|49486873|ref|YP_044094.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57650753|ref|YP_186887.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus COL] gi|87160950|ref|YP_494682.1| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195981|ref|YP_500794.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268531|ref|YP_001247474.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394595|ref|YP_001317270.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151222196|ref|YP_001333018.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980395|ref|YP_001442654.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|161510292|ref|YP_001575951.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141601|ref|ZP_03566094.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315709|ref|ZP_04838922.1| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731083|ref|ZP_04865248.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733086|ref|ZP_04867251.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus TCH130] gi|255006868|ref|ZP_05145469.2| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794530|ref|ZP_05643509.1| response regulator KdpE [Staphylococcus aureus A9781] gi|258411240|ref|ZP_05681518.1| two-component system response regulator KdpE [Staphylococcus aureus A9763] gi|258419757|ref|ZP_05682723.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|258438064|ref|ZP_05689443.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258441312|ref|ZP_05690797.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus A8115] gi|258446995|ref|ZP_05695147.1| response regulator receiver [Staphylococcus aureus A6300] gi|258449772|ref|ZP_05697872.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus A6224] gi|258453209|ref|ZP_05701200.1| response regulator protein [Staphylococcus aureus A5948] gi|258453490|ref|ZP_05701469.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus A5937] gi|262049249|ref|ZP_06022124.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus D30] gi|262052474|ref|ZP_06024672.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus 930918-3] gi|269203716|ref|YP_003282985.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus ED98] gi|282895229|ref|ZP_06303445.1| kdpE protein [Staphylococcus aureus A8117] gi|282923069|ref|ZP_06330754.1| kdpE protein [Staphylococcus aureus A9765] gi|282929309|ref|ZP_06336880.1| kdpE protein [Staphylococcus aureus A10102] gi|284025115|ref|ZP_06379513.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus 132] gi|294850565|ref|ZP_06791292.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus A9754] gi|295407627|ref|ZP_06817418.1| two component transcriptional regulator [Staphylococcus aureus A8819] gi|296275710|ref|ZP_06858217.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus MR1] gi|297210101|ref|ZP_06926494.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246624|ref|ZP_06930455.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus A8796] gi|300910463|ref|ZP_07127915.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus TCH70] gi|304379261|ref|ZP_07362000.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701874|dbj|BAB43166.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus subsp. aureus N315] gi|14247852|dbj|BAB58241.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|21205174|dbj|BAB95868.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus subsp. aureus MW2] gi|49245316|emb|CAG43791.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57284939|gb|AAW37033.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus COL] gi|87126924|gb|ABD21438.1| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203539|gb|ABD31349.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741600|gb|ABQ49898.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149947047|gb|ABR52983.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374996|dbj|BAF68256.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722530|dbj|BAF78947.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|160369101|gb|ABX30072.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725210|gb|EES93939.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728994|gb|EES97723.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus TCH130] gi|257788502|gb|EEV26842.1| response regulator KdpE [Staphylococcus aureus A9781] gi|257839995|gb|EEV64461.1| two-component system response regulator KdpE [Staphylococcus aureus A9763] gi|257844239|gb|EEV68622.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|257848481|gb|EEV72471.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257852356|gb|EEV76281.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus A8115] gi|257854228|gb|EEV77179.1| response regulator receiver [Staphylococcus aureus A6300] gi|257856946|gb|EEV79847.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus A6224] gi|257859155|gb|EEV82012.1| response regulator protein [Staphylococcus aureus A5948] gi|257864362|gb|EEV87111.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus A5937] gi|259159595|gb|EEW44641.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus 930918-3] gi|259162614|gb|EEW47181.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus D30] gi|262076006|gb|ACY11979.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus ED98] gi|269941680|emb|CBI50087.1| response regulator protein [Staphylococcus aureus subsp. aureus TW20] gi|282589119|gb|EFB94218.1| kdpE protein [Staphylococcus aureus A10102] gi|282593260|gb|EFB98257.1| kdpE protein [Staphylococcus aureus A9765] gi|282762419|gb|EFC02563.1| kdpE protein [Staphylococcus aureus A8117] gi|285817744|gb|ADC38231.1| DNA-binding response regulator KdpE [Staphylococcus aureus 04-02981] gi|294822585|gb|EFG39027.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus A9754] gi|294967525|gb|EFG43563.1| two component transcriptional regulator [Staphylococcus aureus A8819] gi|296885301|gb|EFH24241.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176524|gb|EFH35790.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus A8796] gi|300888305|gb|EFK83496.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus TCH70] gi|302751961|gb|ADL66138.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342120|gb|EFM08020.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830431|emb|CBX35273.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128420|gb|EFT84429.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315196988|gb|EFU27330.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320140749|gb|EFW32601.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143724|gb|EFW35501.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314765|gb|AEB89178.1| Two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus T0131] gi|329724028|gb|EGG60552.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus 21189] gi|329727776|gb|EGG64228.1| putative KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus subsp. aureus 21172] gi|329729288|gb|EGG65696.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus 21193] Length = 231 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD A+ H +++ L + +NV D + + D I+LDLGL D G Sbjct: 4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLC 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R P+ ++S + ++ L +GA+DY++KPFN +EL ARIR I R ++ Sbjct: 64 LISEIR-QHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H ++ IV G LS++ +K+V + +HLT E+ ++ELLS K LT EM L +Y Sbjct: 123 HQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIY 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219 ++ E+ + V + LR+KLS K+ I+T GY Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGY 223 >gi|300715486|ref|YP_003740289.1| two component heavy metal response transcriptional regulator [Erwinia billingiae Eb661] gi|299061322|emb|CAX58431.1| Two component heavy metal response transcriptional regulator [Erwinia billingiae Eb661] Length = 224 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 124/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+D+ + L + V V G +G+ + + Y +D I+LD+ + ++ G+ Sbjct: 1 MKILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGLFMAQEYHYDLILLDVMMPELDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ L I PV L+ S++ED+++GL+ GADDY+ KPF+ EL+ARIR +RR Sbjct: 61 EVMKTLDAQNI--PVIFLTAKSTVEDRIKGLELGADDYLVKPFSFAELLARIRTALRRGA 118 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L+ GDL ++ + VE G RI LT KE+ +++L L +++ + + ++ Sbjct: 119 NVKRDELLQVGDLQLDRAKRRVERAGVRIDLTNKEFNLLQLFMLNPGQVMSRTLIASRVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D + + ++DV + +LR+K+ I TV G GY Sbjct: 179 DMNFDSDTNVVDVAVRRLRQKVDEPFATP-LIHTVHGVGY 217 >gi|270157088|ref|ZP_06185745.1| DNA-binding response regulator PmrA [Legionella longbeachae D-4968] gi|289164500|ref|YP_003454638.1| DNA-binding response regulator in two-component regulatory system with QseC [Legionella longbeachae NSW150] gi|269989113|gb|EEZ95367.1| DNA-binding response regulator PmrA [Legionella longbeachae D-4968] gi|288857673|emb|CBJ11516.1| DNA-binding response regulator in two-component regulatory system with QseC [Legionella longbeachae NSW150] Length = 225 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 117/200 (58%), Gaps = 8/200 (4%) Query: 28 YVTDL---GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84 Y+ D GE K F+ IILDLGL + G +L+++R TPV IL+ S+ Sbjct: 25 YIVDWLKDGEAARAALKSESFELIILDLGLPKLSGLALLQSIRNDGNPTPVIILTARESV 84 Query: 85 EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQ 144 ED+V+GL SGADDY+ KPF+ EL ARIRA+VRRS+G A +++ +++++ A +V V Sbjct: 85 EDRVKGLDSGADDYLVKPFDLNELSARIRALVRRSQGRADAVLQYRNITLDPAAHSVFVD 144 Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204 +++ +E+ +++ L L++E + +Y ++ + ++V I LRKKL+ Sbjct: 145 DVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLN-- 202 Query: 205 AGGKNYIETVWGRGYVLREN 224 N+I T+ G GY+ +N Sbjct: 203 ---ANFIRTIRGVGYMAEKN 219 >gi|227554660|ref|ZP_03984707.1| response regulator [Enterococcus faecalis HH22] gi|307271364|ref|ZP_07552641.1| putative KDP operon transcriptional regulatory protein KdpE [Enterococcus faecalis TX0855] gi|227176160|gb|EEI57132.1| response regulator [Enterococcus faecalis HH22] gi|306511950|gb|EFM80943.1| putative KDP operon transcriptional regulatory protein KdpE [Enterococcus faecalis TX0855] gi|315167672|gb|EFU11689.1| putative KDP operon transcriptional regulatory protein KdpE [Enterococcus faecalis TX1341] Length = 234 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD + +E++L E + + + G + + + FD ++LDLGL DI G ++ Sbjct: 10 ILLIEDDPNITDFMEVVLGQERYQLTIASTGMEALTAFQTTSFDLVLLDLGLPDIDGIDL 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR ++ P+ I+S ++ E+KV+ L GADDY++KPF EL+ARIR +R Sbjct: 70 LKILR-KRMHLPIIIISARNNEEEKVKALDLGADDYVTKPFGTNELLARIRTALRHQNVQ 128 Query: 123 AQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +SL V DL ++ + + V +G IHLT EY+++ L+ + + + + ++ Sbjct: 129 TESLTVVENKDLKIDFEKQLVYKKGQEIHLTKNEYRILALMFRQLGKVVAYQTLMTKVW- 187 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G + + + V + +RKK+ + Y+ T G GY LR++ Sbjct: 188 GPYSNDSQTLRVNMSNIRKKIESNTLKPEYLITEIGVGYRLRDH 231 >gi|227894008|ref|ZP_04011813.1| response regulator [Lactobacillus ultunensis DSM 16047] gi|227864209|gb|EEJ71630.1| response regulator [Lactobacillus ultunensis DSM 16047] Length = 239 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 ++IL+++DDK + + + LK+E + G++ I +L + +ILD+ + ++ G Sbjct: 12 VKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMSG 71 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 72 IEVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 130 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L +N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 131 QKQVKDEKPDILEVGPLVINRDSHEVKTIDGKDIQLTALEFGILYLLASHPNRVFSADEI 190 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG++ I+TVWG GY Sbjct: 191 FERVWQQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGY 235 >gi|254252356|ref|ZP_04945674.1| Response regulator [Burkholderia dolosa AUO158] gi|124894965|gb|EAY68845.1| Response regulator [Burkholderia dolosa AUO158] Length = 225 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ F+V + G +G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEESYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I GDL +++ + V+ RI LT +E+ +++LL+ R L++ ++++D Sbjct: 120 PRETERITVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ + K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDDFPIK-LIHTVRGVGYVL 219 >gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein phoP gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis] gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 240 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ ++ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RRS Sbjct: 64 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123 Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A S IV GDL + D + ++ LT KE++++ L K LT+ Sbjct: 124 AAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ N YI+T+ G GY L E +E Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 240 >gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 233 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +D+ LA ++ L E + V G + +EL + + +ILD+ + + G E Sbjct: 5 KILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIMMPGLDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ + P+ +LS + DK+ GL GADDYI KPF+ E+VAR++A +RR + Sbjct: 65 VCRRIR-AESNVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRRFKM 123 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A L+ L +++ + G + LT KE++++ L+L N LT+E Sbjct: 124 SAVPEPKTRLLSYSGLEIDVQGYEAALAGRPLELTTKEFELLRFLALHPNQVLTREQIFA 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + ++ + V I KLR+K+ + +I+TVWG GY AK Sbjct: 184 NVWGFNESGDLNTVTVHIKKLREKIESDLANPTFIKTVWGVGYKFSGGAK 233 >gi|257094853|ref|YP_003168494.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047377|gb|ACV36565.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 219 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/181 (39%), Positives = 103/181 (56%), Gaps = 5/181 (2%) Query: 45 FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104 +DA+++D L D G LRA R A+ STP +L+ + D+V+GL SGADDY+ KPF Sbjct: 44 YDALLVDWQLPDGSGLAWLRARRSARDSTPALMLTARDLLSDRVQGLDSGADDYLVKPFA 103 Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164 EEL AR+RA+ RRS G A S + G + V+L A++ + G RI LTG+E+ ++E L LR Sbjct: 104 PEELSARLRAVCRRSAGGAASRLSFGRVEVDLTARSAWLAGQRIELTGREWSILEALVLR 163 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + K + E I+V + LR+KL G + +ETV G GY + Sbjct: 164 AGRIVPKADLERLVLGFEAELASNAIEVHVSGLRRKL-----GFDLVETVRGLGYRIAAQ 218 Query: 225 A 225 A Sbjct: 219 A 219 >gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 245 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 126/237 (53%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+KA+ +E LK ++V G + ++D I+LDL L + G E Sbjct: 9 KILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKYDFILLDLMLPGMDGIE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R LR +I TP+ IL+ DK+ GL+ GADDY++KPF+ E++ARI+AI RR Sbjct: 69 ITRRLRQERIETPIIILTARDQEYDKIIGLELGADDYLTKPFSPREVIARIKAISRRITS 128 Query: 119 ---SRGHAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 G +Q V + +V+L +V G R+ LT KE++++ R L Sbjct: 129 SSDEGGASQPAKVEKEFYEYAGFTVDLAKVSVARNGERVKLTPKEFELLAYFVKRPGRVL 188 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++E LN ++ + +++D+ + LR+KL + YI+T G GY +AK Sbjct: 189 SREKLLNGVWGYDYVGQTRMVDMHVSHLREKLEDDPKHPVYIQTARGFGYRFNGDAK 245 >gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] Length = 231 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 9/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD A+ S+ L +++ + GE+ + + D +ILD+ + + G Sbjct: 1 MKILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSERPDMVILDVMMPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR TP+ +L+ S+ ++V GL +GADDY++KPF EEL+AR R++VRR+ Sbjct: 61 EVCRELRSQGEDTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRRAA 120 Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A ++ DL ++ + V G +I LT E+ ++ELL L++ Sbjct: 121 RPAAVDTQQIEILKFEDLELDPATRDVTRGGRQISLTRTEFALLELLLRNPRKVLSRTTI 180 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V+I LR+K + A G I+TV G GYVLRE A Sbjct: 181 LEDVW-GYDFPTSGNALEVYIGYLRRK-TEADGEPRLIQTVRGVGYVLRETAP 231 >gi|328956993|ref|YP_004374379.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673317|gb|AEB29363.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 230 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 130/229 (56%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIPG 59 +IL+IED+K LA +EL LK E + V G G+E + + +D I+LDL L ++ G Sbjct: 3 KILIIEDEKNLARFVELELKHEGYATEVRYNGRTGLEAAVAEDAHWDVILLDLMLPELNG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V R +R + P+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA+ RR Sbjct: 63 IDVCRRIRQVS-NVPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALFRRI 121 Query: 120 RGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q+ + DL+V + + V I LT +EY+++ L N L +++ Sbjct: 122 EIESEQNITKQTTVTYRDLTVEKENRVVRRGDEVIELTKREYELLLELMENVNVVLARDV 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN ++ E E ++DV+I LR K+ + +YI+TV G GYV+R Sbjct: 182 LLNKVWGYETEVETNVVDVYIRYLRNKI-DVPNVDSYIQTVRGTGYVMR 229 >gi|312128528|ref|YP_003993402.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311778547|gb|ADQ08033.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 217 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 133/219 (60%), Gaps = 8/219 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++ L I+L L+ E F V G + IE + + +ILD+ L G+ Sbjct: 1 MKILLVEDEEKLRKVIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R K TPV +L+ +DK+ G + GADDY+ KP + +E+VAR++AI++R++ Sbjct: 61 SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I L ++ A+ V V+G +I+LT KEY+++ L R+N L++E+ LN ++ Sbjct: 120 KPSSNDI----LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSRELILNSVWG 175 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ +D I LR+KL + ++YI+TV G GY Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGDL---RDYIKTVRGYGY 211 >gi|320107016|ref|YP_004182606.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925537|gb|ADV82612.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 246 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+AL +E LK E V G+ ++ + D ++LDLGL G Sbjct: 1 MRVLVVEDDRALGLFLERGLKLEGHEVAWVGDGDAAVDYVMEHRLDLMVLDLGLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+AL+ + +L+G IED++ L GADD + KPF+ EL+AR RA+ RR Sbjct: 61 DVLQALQGLHGGMAILVLTGRVGIEDRISSLNLGADDCMMKPFSFHELIARCRALERRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ DL+++ + V+ G + LT KE+ ++E L L + ++++ L ++ Sbjct: 121 FPVDSVLRHDDLTMDRMHRKVQRGGEPVDLTVKEFALLEYLLLHHDRCVSRKELLAKVWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKL----SNAAGGKNYIETVWGRGYVLR 222 E ++DV++ LRKKL ++ G + IETV G GY LR Sbjct: 181 MAPEAGTNVVDVYVNYLRKKLEPKVASLFGVSSLIETVRGEGYRLR 226 >gi|291518264|emb|CBK73485.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++A+A + L+ NF V + GE G++ +D ILDL L I GFE Sbjct: 3 RILIIEDEEAIAELEKDYLELSNFEVDIEADGEKGLQKALAGNYDMYILDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +++ DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 LCKRIREVK-NVPILMVTAKKEEIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121 Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 QS + D L ++ ++ V + G T KE+ ++ L+ N +KE Sbjct: 122 LVQSPNIQKDEISIRGLRIDKASRRVWINGEEKTFTAKEFDLLTFLAENPNVIYSKEQLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ + V + K+R+K+ YIET+WG GY + Sbjct: 182 ETLWGEESIGDISTVTVHVNKIREKIELNTSKPQYIETIWGVGYRFK 228 >gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550] gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550] Length = 243 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 77 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + +N+ ++TV + G RI+LT EY ++ L++ +N T E Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNCVFTIEEIY 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I +LR K+ +I+ VWG GY Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 239 >gi|50955426|ref|YP_062714.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951908|gb|AAT89609.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 220 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA ++ L + F V V G ++ + FD ++LD L ++ G Sbjct: 1 MRVLVVEDEPDLAETLREALTVDGFVVDVAGDGRQALDFLETQPFDLVVLDRDLPEVSGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R L + +L+ + D+VRGL+ GADDY+ KPF ELVAR+RA+ RRS Sbjct: 61 EVCRLLVERGSIVRILMLTASVDLADRVRGLELGADDYLVKPFAYAELVARLRALARRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S++V G L V++ + +V+G + L KE+ ++E L+L LT E L + Sbjct: 121 RAAGSVVVVGALRVDVTRRIADVEGFPVALMPKEFSVLEALALHDGAGLTAERLLAMAWA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E V + V + LR+KL A IE+ G GY L Sbjct: 181 EPYERTVGAVRVVVHSLRRKLGPAL----RIESAPGYGYRL 217 >gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6] gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] Length = 251 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 20 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS+ Sbjct: 80 VAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 138 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 139 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 198 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ +V+ +DV + +LR+K+ + YI T G GY +R NA Sbjct: 199 HLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 251 >gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 227 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RI+++ED++ + + L +++E F V G+ ++L + Y D +ILD+ L ++ G+ Sbjct: 4 FRIMVVEDEERMRQLLHLYMQNEGFEVVDAYDGQQALDLFEKYPMDLVILDVMLPNVDGW 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R P+ +L+ DK+ G G DDY+ KPF+ +ELVAR++A+++RSR Sbjct: 64 TVCRQIRQGS-QVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKRSR 122 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G+A + +I LS+ ++ V + I LT KE+ ++ L+ ++E L+H Sbjct: 123 GNANAQDRVIKYESLSIEPLSRRVTINDEDIILTPKEFDLLFFLASHPGQVFSREQLLHH 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +D + LR KL N YI TVWG GY Sbjct: 183 VWGYDFYGDSRTVDAHVKNLRSKLGNYG---RYIVTVWGVGY 221 >gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42] gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1] gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1] gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42] gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 237 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE ++L + +ILDL + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122 Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + Q + + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGY 228 >gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 268 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V + G +G+ L + +DA+ILDL L + G E Sbjct: 26 RILIVEDDVDIADVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGLE 85 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 86 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 145 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 SR A SL + G LS++ + G I LT +E+ ++ + ++ Sbjct: 146 LAKDSRIEAGSLRLAG-LSIDPLTREAAADGKPIELTPREFDLLYYFAQHPGKVFSRMDL 204 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 205 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 251 >gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 125/224 (55%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ A + +L+ E F + G+ +E D ++LDL L + G + Sbjct: 3 RVLIVEDEESFADPLAFLLRKEGFTAAIATDGQQALEEFDRNGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR + S PV +++ S DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCRELR-QRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGD 121 Query: 119 SRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S G + Q++++ G + ++++ V V G + L KE+ ++E L LT+ + Sbjct: 122 SSGDSQQEQTVLIGGPVRMDVERHVVTVNGTEVPLPLKEFDLLEYLLRNVGRVLTRNQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEPEPGSPRYLVTVRGLGY 225 >gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 236 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++D+ + + L+ F V+ G I+L D ++LD+ L D+ GFE Sbjct: 5 RLVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLITDTTPDLVVLDVMLPDLDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR I +PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR+ Sbjct: 65 VTRRLRSKDIHSPVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTNH 124 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ DL ++ D+ V G + L+ E++++ L L L+K+ L+H+ Sbjct: 125 QIDDNDAVLSYADLDMDEDSHEVRRAGVVVDLSPTEFKLLRYLMLNSGRVLSKQQILDHV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKL-----SNAAGGKNYIETVWGRGYVLRE 223 +D + I++ +I LR+K+ + + + I T G GY+LR+ Sbjct: 185 WDYDWGGDANIVESYISYLRRKIDAVTQPDGSPVQPLIHTKRGVGYMLRK 234 >gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 237 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL +DDK + + +++ L+ E + V GE+ + L ++ +ILDL + I G Sbjct: 4 IRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLRY-KTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S AQ +L G L+ NL+ TV I+LTGKE ++++ + TK Sbjct: 123 VLGSSNTAQEKTTLSFKG-LTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKT 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 182 QLFQNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228 >gi|307325774|ref|ZP_07604974.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306888562|gb|EFN19548.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED L ++ L +E F V + G +G+ +DAI+LD+ L + G+ Sbjct: 1 MRVLVVEDHPMLGRALVHGLTTEGFAVDLATDGAEGLYRVGETPYDAIVLDIMLPRVNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR AK TPV +L+ D+ GL GADDY++KPF+ L AR+ A++RR Sbjct: 61 DVCRRLRAAKDWTPVLMLTAKDGEYDEADGLDIGADDYLTKPFSYVVLTARLHALIRRGH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++ +T G I LT +E+ ++E L + ++K+ L H++ Sbjct: 121 IPRPPVLSVGDLLLDPGGRTCVRAGTPIELTTREFSLLEYLVRHEGQVVSKQEILTHVWA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + +++V+I LR+K+ ++ IETV G GY L + + Sbjct: 181 EHFDLDPNVVEVYIGYLRRKIDTPFRVRS-IETVRGAGYRLAADGR 225 >gi|229055102|ref|ZP_04195532.1| Two-component response regulator [Bacillus cereus AH603] gi|228721250|gb|EEL72776.1| Two-component response regulator [Bacillus cereus AH603] Length = 233 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ + + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R AK P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + GD+ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGDMKINISTHKVIVEGEEVKLTPREFSILELLARNPGVVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ +A ++L + E + V + G G++ ++D ++LD+ L + G+E Sbjct: 4 KILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEALEGDYDLVLLDIMLPGMDGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120 VL+ +R PV +L+ ++DKVRGL GADDY++KPF+ EEL AR+RA +R R+ Sbjct: 64 VLKKIR-ENSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALRKRNP 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ + ++L V QG +I LT KE+ ++E L N L++E L ++ Sbjct: 123 SIKKDVLKFAGIVMDLTTHEVRRQGVKIDLTKKEFDLLEFLMRNANIALSREKILRSVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DV+I LR K+ + K I T+ G GY LR+ Sbjct: 183 YDYYGDTNVVDVYIRYLRSKIDDPFDRK-LIHTIRGVGYSLRD 224 >gi|81428994|ref|YP_395994.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78610636|emb|CAI55687.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 228 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+K LA +EL LK E + V G G+E ++D+I+LDL L ++ G E Sbjct: 3 RILIIEDEKNLARFVELELKHEGYGTEVHFNGRTGLEAALNEDWDSILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115 V R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA I Sbjct: 63 VCRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDI 121 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + DL+V + + V I LT +EY+++ L N L +++ L Sbjct: 122 EGEHNAAKQTTVTYRDLTVEKENRIVRRGDDIIELTKREYELLLTLMENVNVVLARDVLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + E ++DV+I LR K+ + G ++YI+TV G GYV+R Sbjct: 182 SKVWGYDSDVETNVVDVYIRYLRNKI-DRTGEQSYIQTVRGTGYVMR 227 >gi|163813913|ref|ZP_02205307.1| hypothetical protein COPEUT_00066 [Coprococcus eutactus ATCC 27759] gi|158450783|gb|EDP27778.1| hypothetical protein COPEUT_00066 [Coprococcus eutactus ATCC 27759] Length = 233 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+ + + I LK+ ++ + G I + D ++LDLGL DI G +V Sbjct: 6 VLVVEDDRPVRNLIVTTLKAHDYRYLTAENGHSAIIEATSHNPDIVLLDLGLPDIDGTQV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + ++R + + P+ ++S S +DK+ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IESIR-SWSNMPIIVISARSEDKDKITALDAGADDYLTKPFSIEELLARLRVTQRRLLLL 124 Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G A S + G L ++ A + G +HLT EY+++ LLS LT Sbjct: 125 QASGDANSPVFQNGKLKIDYAAGCAYLNGEELHLTPIEYKLLCLLSHNVGKVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E ++ + VF+ LRKKL G YI+T G GY Sbjct: 185 QIWGSSWENDIASLRVFMATLRKKLEPQKDGPQYIQTHIGVGY 227 >gi|300779477|ref|ZP_07089335.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300504987|gb|EFK36127.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 224 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED K LA +I LK EN+ ++ I + Y +D I+LDL L G Sbjct: 1 MKILIIEDQKELAENISSYLKGENYVCEFASDYQEAIFKTEEYNYDCILLDLMLPSGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR V I+S +IEDK+ GL+ GADDY++KPF+ EL ARI +++RR Sbjct: 61 SILENLRSRSKQDGVIIISAKDAIEDKIDGLKLGADDYLAKPFHLSELGARIYSVIRRKH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 + + I ++ ++L AKTV V + LT KE+ ++ L KN ++K HL Sbjct: 121 FGSTNGIYVNEIYIDLLAKTVRVNSLLLTLTRKEFDLLLFLVGNKNKNISKVAIAEHLSG 180 Query: 180 ---DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D D + I + L+KKL+ AG K+YI+T +G GY Sbjct: 181 EMADMMDNHD--FIYSHLKNLKKKLTE-AGCKDYIKTTYGMGY 220 >gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] Length = 235 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 133/228 (58%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E + V V GE+ +E + + D IILDL L + G E Sbjct: 4 KILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEAEDPDLIILDLMLPKVDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R AK +TP+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAKRVR-AKHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRE-A 121 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ+ I GD++++ +A TV +G I+LT +E++++ L+ + +E Sbjct: 122 TAQAPAEEDKNTDIKVGDITIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +V+ +DV + +LR+K+ + ++ T G GY L Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSQPQWLITRRGVGYYL 229 >gi|167590140|ref|ZP_02382528.1| two component heavy metal response transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 227 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRIL++ED+ + L YV D EDGI + ++D ++LD+ L Sbjct: 1 MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGLHQAETEDYDLLVLDVMLPGQ 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ +L+ LR +K STPV L+ M + D+V+GL+ GADDY++KPF+ EL ARI++++R Sbjct: 58 DGWTLLQNLRRSK-STPVLFLTAMDDVGDRVKGLELGADDYLAKPFDFVELTARIKSVLR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + + DL ++L + QG I LT KE+ ++ LL R+ L + + Sbjct: 117 RGQPRESNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + ++D I +LR K+ +A K I TV G GYVL Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219 >gi|18309930|ref|NP_561864.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18144608|dbj|BAB80654.1| two-component response regulator [Clostridium perfringens str. 13] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + + +L+ E F V G +G +F++FD ++LDL L I G Sbjct: 7 ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R K +TP+ ++S +++EDK+ L+ GADD+ISKPF+ E++AR+ A++RRS+ Sbjct: 67 IEEIRKIK-NTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S I +L + ++ V+V+G I LT KE++++ELL TK + Sbjct: 126 NSSKGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + I+V I LR K++ +YI+T+WG G+ Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGF 226 >gi|313683188|ref|YP_004060926.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] gi|313156048|gb|ADR34726.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] Length = 220 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+I+D++ L +++ +L+ +++V + +G ++D I+LD L D G Sbjct: 1 MHLLIIDDNEELLYALRQLLRDAHYHVDIATTLSEGENFINQKKYDLILLDWILPDGNGP 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR I TPV + S IEDKV L GADDY+ KPF+ EL+ARIRA++RR Sbjct: 61 ELLIRLRYQNILTPVLLFSSKKEIEDKVEALDGGADDYLEKPFSNIELLARIRALLRRES 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + G LSV+ +++V++ + L+ KE++++E L L NT LT+ HL Sbjct: 121 TQKQTHLKLGKLSVDFSSRSVQIDNTPVKLSAKEFELLEFLLLNANTVLTRYQISEHL-- 178 Query: 181 GRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 RD ++ I+D I LRKKL + I+TV G GY++ Sbjct: 179 SRDFDQIATSNIVDAHIKNLRKKLD----ADDLIQTVRGVGYMI 218 >gi|163814718|ref|ZP_02206107.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759] gi|158450353|gb|EDP27348.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759] Length = 225 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 129/226 (57%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ +A +EL L E + V G G++ +FD ++LD+ L + G E Sbjct: 4 KILIVEDEEKIARFVELELVHEGYEVEKAFDGRTGLDKALTGDFDLVVLDVMLPGLNGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + PV +L+ ++ DKV GL +GADDY++KPF EEL+ARIR ++R RG Sbjct: 64 VLRRIRKESV-VPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELLARIRVALKR-RG 121 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H + + G + ++ D V V G + LT +E++++ L K+ + +E L+ Sbjct: 122 TVEVHTHRIEIRG-VCMDTDRHEVTVDGESVELTNREFELLRTLMENKDIVMDREKLLSA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E IIDV++ LR K+ + G K I TV G GYV+RE Sbjct: 181 VCGYDYLGETNIIDVYVRYLRTKIDDRFGVK-LITTVRGVGYVIRE 225 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] gi|133738671|emb|CAL61716.1| Transcriptional regulatory protein CusR [Herminiimonas arsenicoxydans] Length = 230 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F V + G DG L +D IILD+ L DI G+ Sbjct: 1 MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ALR A + P L+ + D+V+GL+ GADDY+ KPF EL+AR+R ++R R Sbjct: 61 KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLR--R 118 Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G L+ DL ++L + G R+ LT KE+ ++E L K L + + + Sbjct: 119 GIPSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D + +IDV I +LR K+ + K I T+ G GYVL + Sbjct: 179 IWDINFNSDTNVIDVAIRRLRSKMDDDYEPK-LISTIRGVGYVLED 223 >gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] Length = 238 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + IE L+ F V GE ++ D IILDL L + G E Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALQKAVTERPDLIILDLMLPKMDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ ++ TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + I DL + + Q ++ LT KE++++ L+ K LT++ Sbjct: 124 QDEQVPEVQDENSIHIVDLKILPEFYEAYFQEEKLELTPKEFELLVYLARNKGRVLTRDQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ +++ + +I+DV I LR K+ YI+T+ G GY L E +E Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKGNE 238 >gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201] gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201] Length = 237 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE ++L + +ILDL + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122 Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + Q + + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGY 228 >gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21] gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21] Length = 239 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD ALA +E +E ++V VT G++ + L D +ILD + G E Sbjct: 15 KLLLVEDDPALAELLEYRFANEGYDVRVTSDGDEALLLAAEDVPDLVILDWMIEGTSGIE 74 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR A S P+ +L+ + +D++RGL++GADDY++KPF+ EL+AR+ A++RR Sbjct: 75 VCRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARVAAVMRRI 134 Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A I GDL+++ A V +G + L EY++++ ++ L+ + Sbjct: 135 RPVLAGESIEVGDLALDPVAHKVTRRGKTLKLGPTEYRLLKFFMESPGRVFSRNQLLDGV 194 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E++ +DV I +LRK + G K+ + TV GY L Sbjct: 195 WGTESDIELRTVDVHIRRLRKAI-EIEGAKDPVRTVRSAGYSL 236 >gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 226 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ LA IEL L E + V V G + + + D +ILD L + G E+ Sbjct: 4 ILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARELDIDLVILDWMLPGLSGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIED--KVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR PV +L+ + D +V GL +GADDY+ KPF+ EEL+AR+RA +RR++ Sbjct: 64 CRRLRSTGDQVPVILLTAKDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAHLRRNQ 123 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A ++ DLS+N + V +G R I LT KE+ ++E L +T++ L + Sbjct: 124 DADAGDILQFEDLSLNRRTREV-FRGQRLIDLTAKEFDLLEYLLTHPRQVITRDRILEQV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + II+V+I LR KL K I+TV G GYVLRE Sbjct: 183 WDYDFIGDSNIIEVYIRYLRLKLET-NNEKRLIQTVRGVGYVLRE 226 >gi|221211979|ref|ZP_03584957.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD1] gi|221168064|gb|EEE00533.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD1] Length = 225 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 125/221 (56%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ L+ F+V + G G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGLEESGFSVDLATDGAQGLLLAQEESYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I GDL +++ + V+ RI LT +E+ +++LL+ R L++ ++++D Sbjct: 120 PRETERITVGDLDIDVVRRRVKRGAVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ + K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDDFPIK-LIHTVRGVGYVL 219 >gi|94310118|ref|YP_583328.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353970|gb|ABF08059.1| two component transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] Length = 266 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+EDD +A+ + + L+ E + V + G +G+ L + +DA++LDL L + G E Sbjct: 25 RILLVEDDVGIANVLAMHLRDERYEVVHSADGAEGLRLLEQGGWDALVLDLMLPGVDGLE 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 85 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVEA 144 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R A SL + G L+++ A+ V G R+ LT +E+ ++ + + ++ Sbjct: 145 MARDVRADAGSLELAG-LAIDPLAREAAVDGKRLDLTPREFDLLYYFARHPDKVFSRMDL 203 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LN ++ + E ++ I +LR K+ I TVW RGY Sbjct: 204 LNAVWGYQHEGYEHTVNTHINRLRTKIEVDPAQPKRILTVWRRGY 248 >gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 237 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + L +E F V GE + + +D +ILD+ L I G+E Sbjct: 9 RILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHWDLVILDIMLPKIDGWE 68 Query: 62 VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R KIS P+ +L+ D+V GL+ GADDYI KPF+ E+VAR++A++RR+R Sbjct: 69 VCREIR--KISDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRRAR 126 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + IV G++ + +A+TV V G + LT KE+ ++ L+ +E L+ + Sbjct: 127 KSSTPGKQIVLGNVVIEPEARTVTVGGKTLALTPKEFDLLLTLARSPGKVFRREELLDLV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +D + +LR+KL N AG I TVWG GY L Sbjct: 187 WGYDFYGDSRTVDTHVARLREKL-NQAGAPPLIATVWGVGYKL 228 >gi|229032736|ref|ZP_04188696.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228728563|gb|EEL79579.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 225 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+++++ A I L E + + G+ + ++D IILD I G E Sbjct: 3 QVLVIKNERSFAKKIVSGLTQEGYFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R+ K +TP+ I++ S +D + GLQ+GADDYI KPF KEELVAR++AI+RR+ Sbjct: 63 ICRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRTNY 121 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q + DL V+ + V+ + LT +EY ++ L KNT L++EM LN + Sbjct: 122 IQQNETNFFQFKDLFVDTSSNIVKKGSENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 225 >gi|206969651|ref|ZP_03230605.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228923426|ref|ZP_04086712.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954942|ref|ZP_04116960.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072175|ref|ZP_04205383.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185] gi|229081927|ref|ZP_04214419.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2] gi|229147236|ref|ZP_04275593.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24] gi|229180989|ref|ZP_04308324.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W] gi|206735339|gb|EDZ52507.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228602546|gb|EEK60032.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W] gi|228636245|gb|EEK92718.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24] gi|228701515|gb|EEL54009.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2] gi|228710913|gb|EEL62880.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185] gi|228804763|gb|EEM51364.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836211|gb|EEM81566.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A I R R Sbjct: 63 ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|238749640|ref|ZP_04611145.1| Two-component response regulator of virulence determinant [Yersinia rohdei ATCC 43380] gi|238712295|gb|EEQ04508.1| Two-component response regulator of virulence determinant [Yersinia rohdei ATCC 43380] Length = 223 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + ++ V D ED E F + D I+DLGL Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + + P+ +L+ S +DKV L++GADDY++KPF+ EE++ARI+A++R Sbjct: 58 DGLSLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + V +I LT EY +IE L ++K+ + Sbjct: 118 RNIGLASQVIDFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LY + E IDV + +LRKKL G+ I T+ G+GY N Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLQAEHEGE-VITTIRGQGYRFDTN 223 >gi|328544519|ref|YP_004304628.1| Response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain [polymorphum gilvum SL003B-26A1] gi|326414261|gb|ADZ71324.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Polymorphum gilvum SL003B-26A1] Length = 227 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDDK A + L+ GE+G+E ++D +I+D L G Sbjct: 1 MRILIIEDDKQAAAYLAKGLREVGHVADHAADGEEGLERALDGDYDVMIVDRMLPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ ALR A TPV ILS + ++D+V GL++G DDY+ KPF EL+ARI A+ RR + Sbjct: 61 SVIEALRKAGDHTPVLILSALGQVDDRVTGLRAGGDDYLPKPFAFTELLARIEALGRRPK 120 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +++ DL ++ G I L +E++++E L +T+ M L ++ Sbjct: 121 ASGETETVYRVADLELDRLTHRCSRAGKDIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ +P+ +IDV I +LR K+ + + T+ G GY +R+ A Sbjct: 181 WEYHFDPQTNVIDVHISRLRAKIDKDF-DRPLLHTIRGAGYSIRDAA 226 >gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7] gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 129/226 (57%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ + +++ LK+E+F ++ + G+ E+ + + D +ILDL L DI G Sbjct: 3 KILIVEDDEDIRDILKIYLKAESFEIWEAENGKQAFEILEDKKPDLVILDLMLPDINGLN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +++R K P+ +++ ++ +DK+ GL GADDYI+KPFN E++AR++A +RR + Sbjct: 63 ICKSIR-TKYKYPIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQLRRYKE 121 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + S I L ++ ++ + G + LT E+ ++E+L L + L+ E + Sbjct: 122 YGENTKEDSTIYYKGLILDRKSRQANLNGKELKLTPTEFNLLEILLLNRGQVLSGEKLFH 181 Query: 177 HLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L D + V I LR+K+ + YI+TVWG GY++ Sbjct: 182 LLREDEYYSKSTNTVTVHIRNLREKMEESFEHPEYIKTVWGVGYII 227 >gi|326797323|ref|YP_004315143.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326548087|gb|ADZ93307.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 221 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD +++H I L + + + D GED ++L K FD I+LD + I G Sbjct: 1 MRILIVEDDASVSHWISSKLHTSGHSCKLVDNGEDALKLIKEEVFDVILLDRVIPKIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L L + PV ILS D++ GL++GADDY+ KPF+ EL+ R+ + R++ Sbjct: 61 QLL-GLLANESHPPVLILSANDQTSDRIEGLRAGADDYLGKPFDFAELLLRLERLYCRTK 119 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A S I D+ +NL+ V GHR+ LT KE++++ +L+ T+T+ M L + Sbjct: 120 QVASSNFIKIKDMIINLERHEVTRSGHRVDLTNKEFKLLYVLAEHPGQTVTRSMLLEKAW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVL 221 +P+ ++DV + KLR KL G KN I T+ GY L Sbjct: 180 GYHFDPQTNVLDVHLSKLRNKLD--GGSKNPIIRTIRSVGYAL 220 >gi|256544640|ref|ZP_05472012.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC 51170] gi|256399529|gb|EEU13134.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC 51170] Length = 219 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 4/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I ++EDDKA+ + + LK +N+ V + G + +E K D +ILD+ L + G E+ Sbjct: 2 IYVVEDDKAIRNLVLYALKEKNYQVRGFEDGLNVVESLKNENVDLLILDIMLPEKDGIEI 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R P+ +L+ + DKV GL+SGADDYI+KPF+ EL++RI+A++RRS Sbjct: 62 LKEVREFS-DIPIIMLTAKNDEYDKVLGLESGADDYITKPFSILELISRIKAVLRRSEKK 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ VN+ +T ++ G +I LT KE++M+ L +T+E FL ++ Sbjct: 121 DGEHLSYKNIRVNIKKRTAKIDGEKIDLTYKEFEMLLLFLSNIGNVITREDFLLKIWGYD 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E E + +DV I LR KL +A +I+TV GY L E Sbjct: 181 YEGETRTVDVHIASLRNKLKSAGI---HIKTVRNLGYKLGE 218 >gi|91778359|ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400] gi|296159926|ref|ZP_06842747.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|91691019|gb|ABE34217.1| Hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400] gi|295889909|gb|EFG69706.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 223 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ L+ + V + G DG+ + +D ++LD+ L I G+ Sbjct: 1 MSILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++RALR A+ PV L+ + D++RGL+ GADDY+ KPF+ ELV RIR ++RR Sbjct: 61 EIMRALR-ARRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL +++ + V +G I LT KE+ ++ LL R+ L++ + ++D Sbjct: 120 TRESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV I +LR K+ + K I TV GY Sbjct: 180 MNFDSDTNVVDVAIKRLRAKVDHPF-EKKLIHTVRSIGYTF 219 >gi|78062579|ref|YP_372487.1| two component heavy metal response transcriptional regulator [Burkholderia sp. 383] gi|77970464|gb|ABB11843.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 231 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 4/230 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + ++ L E + V GEDG +++D ++LD+ L + GF Sbjct: 1 MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ ++D+VRGL+ GADDY++KPF+ EL+ R+RA+ RR+R Sbjct: 61 GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT +E+Q++ +L+ R L+K ++D Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDE 228 + +++ I +LR KL K + T+ G GYVL RE+ E Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFTDK-LLHTIRGMGYVLEAREDGDTE 228 >gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185] gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2] gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W] gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W] gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2] gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185] gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 237 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L +++ +ILDL + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S AQ +L G L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNNTAQEKTTLSFKG-LTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKT 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 182 QLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228 >gi|162146556|ref|YP_001601015.1| two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209543446|ref|YP_002275675.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785131|emb|CAP54676.1| putative two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531123|gb|ACI51060.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 239 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 15/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPG 59 IL+++DD+ + + L+ F V DG E K + + ++LDL L G Sbjct: 7 ILIVDDDREIRDLLARFLERNQFRVTTA---RDGRETRKAWLAGHYQIVVLDLMLPGESG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+ R LR + + P+ +L+ M D++ GL+ GADDY+ KPFN EL+ARIRA++RRS Sbjct: 64 LELARWLR-GQANVPIIMLTAMGEETDRIIGLELGADDYVPKPFNPRELLARIRAVLRRS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVE--------VQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ +V S++ T+E +G + LTG EY ++ L R N LT+ Sbjct: 123 SEAPETRVVGEPRSLHFSGWTLEQARRRLLNPEGTEVPLTGGEYDLLMALLDRANRVLTR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +M + L + P + IDV I +LR+KL + I+TV G GYVL Sbjct: 183 DMLFDLLRGRQAGPFDRAIDVAISRLRRKLEDNGRNAQLIKTVRGGGYVL 232 >gi|149374330|ref|ZP_01892104.1| DNA-binding heavy metal response regulator, putative [Marinobacter algicola DG893] gi|149361033|gb|EDM49483.1| DNA-binding heavy metal response regulator, putative [Marinobacter algicola DG893] Length = 222 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ LA I + L ENF V V G++ + + AIILD+GL D G Sbjct: 1 MKVLIVEDNAVLAEKISVWLAKENFTVDVAQNGKEANFFVETSSYQAIILDIGLPDENGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ R + IL+ S+ ++V GL +GADDY+ KPF +EL AR+ AI+RR Sbjct: 61 SLMQKWRSNGKDEAILILTARSNWTERVEGLNAGADDYLPKPFEFDELKARLSAIIRRKD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G I +N +T+ H+ LT EY++++ + +++ + LY Sbjct: 121 GRTTDKIAVDGFLLNSTYRTLTTPDHKEFRLTATEYRLLQCFLRSPDRVFSQDDLVESLY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + P ++ V+I +LRK L GK+ I+T+ G+GY Sbjct: 181 NIERCPTRNVVQVYIARLRKIL-----GKSRIKTLRGQGY 215 >gi|289579453|ref|YP_003478080.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289529166|gb|ADD03518.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 126/221 (57%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + I+ L+ E + Y GE+ +++ K D IILD+ L + GF Sbjct: 4 RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR + ++ P+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VLRTLRQS-MTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +++ +L +++ VE + LT +E+++++ L L K ++EM L + Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKNNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++ +DV I +LR+K+ + I T G GY Sbjct: 183 WGYEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGY 223 >gi|168184914|ref|ZP_02619578.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182672034|gb|EDT83995.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 229 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + ++V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFQDQGYSVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 ICQKIR-DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I G L+++++++ V + I T KE+ ++ELL+L +KE + Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPQQVFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + + I K+R K N+I TVWG GY N Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWERN 227 >gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1] gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1] Length = 238 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 10/233 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ + + + L+ EN+ + + GE +EL E+D I+LDL + + G Sbjct: 5 VKVLIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEYDCILLDLMMPGMDGI 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K STPV +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 65 EVCKELRQKK-STPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSS 123 Query: 121 G--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ +IV L+++ DA V G ++LT KEY+++ LS + +E Sbjct: 124 KTSYIHTDTKAKDMIVYPHLTIDNDAHRVTADGKDVNLTPKEYELLYFLSKAPDKVFDRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLREN 224 L ++ +++ +D + +LR+KL+ + I TVWG GY N Sbjct: 184 HLLKEVWHYDFFGDLRTVDTHVKRLREKLNKVSEQAAKMIVTVWGVGYKFEVN 236 >gi|69248477|ref|ZP_00604751.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257878623|ref|ZP_05658276.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257883117|ref|ZP_05662770.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257891864|ref|ZP_05671517.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257894434|ref|ZP_05674087.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|258616852|ref|ZP_05714622.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium DO] gi|260559336|ref|ZP_05831518.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261208012|ref|ZP_05922690.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566892|ref|ZP_06447299.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium D344SRF] gi|293556475|ref|ZP_06675049.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|293563844|ref|ZP_06678277.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293567266|ref|ZP_06678620.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294615582|ref|ZP_06695438.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|294619807|ref|ZP_06699197.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|294622907|ref|ZP_06701820.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|314938083|ref|ZP_07845391.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943605|ref|ZP_07850362.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314949242|ref|ZP_07852591.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314952608|ref|ZP_07855600.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314992456|ref|ZP_07857878.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314997382|ref|ZP_07862337.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|68194414|gb|EAN08919.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257812851|gb|EEV41609.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257818775|gb|EEV46103.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257828224|gb|EEV54850.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257830813|gb|EEV57420.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260074696|gb|EEW63016.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260077770|gb|EEW65483.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161298|gb|EFD09191.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium D344SRF] gi|291590015|gb|EFF21809.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291591525|gb|EFF23178.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|291593940|gb|EFF25424.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|291597679|gb|EFF28832.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291601354|gb|EFF31632.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291604214|gb|EFF33715.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|313588550|gb|EFR67395.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313592998|gb|EFR71843.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313595276|gb|EFR74121.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597723|gb|EFR76568.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313642572|gb|EFS07152.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313644383|gb|EFS08963.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 234 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ + L+ E + V G +G+EL FD IILD+ L + G E Sbjct: 3 KILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGME 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + LR K TP+ +L+ D++ GL+ GADDY++KPF+ E++AR++AI RR Sbjct: 63 ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIEP 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 QS + G ++ +L V V H I LT KE++++ RK+ + ++ Sbjct: 123 RKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDTL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ + +I+DV + LR+K+ Y+ T+ G GY +E + Sbjct: 183 LDRIWNFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTIRGFGYKFQEPKR 234 >gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 233 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++AI+RR+ Sbjct: 63 VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDL 121 Query: 120 -----RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A+ IV GDL + DA V+ G + LT +E++++ L+ +T+E Sbjct: 122 TIENQEAEAEPKEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232 >gi|312792374|ref|YP_004025297.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179514|gb|ADQ39684.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 221 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 8/222 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED + L I LK+E FNV + +D +E K + D IILD+ L D+ G+EV Sbjct: 4 ILVVEDQQDLNQIITRFLKNEGFNVINSYTAKDALE--KLNDADLIILDIMLPDMEGYEV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +K P IL+ S DK++G + GA+DYI+KPF+ EL+AR++ ++RR+R Sbjct: 62 LK--EASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRNF 119 Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +S+ ++ G + + V V G ++LT KE++++ L+ K+ +++ L ++ Sbjct: 120 EESIKLLGGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +DV I +LR+KL + K I+TVWG GY L E Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSE 218 >gi|114330073|ref|YP_746295.1| two component heavy metal response transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114307087|gb|ABI58330.1| two component heavy metal response transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] Length = 231 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 127/236 (53%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K LA + L + V V G +G+ + +D I+LD+ L + GF Sbjct: 1 MKVLVVEDEKKLADYLRRALTEHGYVVDVAGDGREGLYFAQETPYDLILLDVMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++LR LR K PV +LS +ED+VRGL+ GADDY+ KPF+ EL+ARI A+ RR Sbjct: 61 QLLRELR-KKSRVPVIMLSARDRVEDRVRGLEDGADDYLPKPFSLTELMARIFALARRND 119 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + H +++ DL ++L + V I LT KE+ +++L + L+++ Sbjct: 120 PANLAEAHT-NIVRVADLELDLQRRRVYRNEQPISLTLKEFALLQLFMRKCGQVLSRQTL 178 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 ++D +++ + +LR K+ K I TV G GYV+ A+D+ C Sbjct: 179 AEQVWDINFNNNTNVVEAAVRRLRAKVDGPFESK-LIHTVRGMGYVI--EARDQEC 231 >gi|332297646|ref|YP_004439568.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332180749|gb|AEE16437.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 238 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED LA + L L E + E + + + D ++LDL L + GFE Sbjct: 4 RILVIEDVSELAELVALYLGKEGMEAVTVESAEAAFDALETFSPDLVLLDLNLPGMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 L R STPV I+S + ED + GL GAD+YI+KPF+ LVAR+RA++RR Sbjct: 64 FLHKFRKTH-STPVLIVSARDADEDIISGLGGGADEYITKPFSPRVLVARVRAMIRRVQD 122 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S ++ + GD +++L + + G RI L+ KEY ++ L LT + Sbjct: 123 ATSESAAASEQVFCFGDFTLHLSSCVLTRSGERIPLSAKEYAILSFLVKNAGRPLTPAVI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ ++ + V+I +LRKK+ +IETV+G GY Sbjct: 183 YDEVWKNA-YGDLSAVAVYIQRLRKKIEADPADPRFIETVFGMGY 226 >gi|323487407|ref|ZP_08092704.1| DNA-binding response regulator DltR [Clostridium symbiosum WAL-14163] gi|323399264|gb|EGA91665.1| DNA-binding response regulator DltR [Clostridium symbiosum WAL-14163] Length = 225 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD+ L +I++ L ++ + G DG +D +I+D L ++ G Sbjct: 1 MKILLIEDDEVLCKTIQMSLTKAGYDTEICHTGTDGFLYACSGAYDCLIIDRMLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +L+ALR KI TP + + + D++ GL +GADDYI+KP+ EEL+ARIRA+ RR Sbjct: 61 TLLQALRRRKIQTPAIFSTALDGLNDRINGLDAGADDYIAKPYAIEELLARIRAVTRRLG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + + DL + + + Q + L+ KE ++E TL +E+ L +++ Sbjct: 121 RIEEECTLTFEDLVFLPEHRELRYQNASVSLSKKESSLLEYFFRNPGRTLNREVILGYVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E E +D +I LR++L I TV G GY L +N Sbjct: 181 GASSEVEDGNLDNYIYFLRRRLRTLNAPVK-ITTVHGVGYRLEKN 224 >gi|312886562|ref|ZP_07746170.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311300965|gb|EFQ78026.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 228 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 129/228 (56%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+ED+ + I+ L F + V G +++ ++FD +ILD+ L + G Sbjct: 1 MAVLLVEDEPNIVSVIKRGLADFGFEISVATDGLTALQMTIDHQFDLVILDVMLPSMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R + P+ +L+ + S E+ V GL SGADDY+ KPF EL R++ ++RR+ Sbjct: 61 QLCKHIRERDENIPILMLTALDSTENIVTGLNSGADDYMVKPFKMIELATRLKTLLRRAG 120 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G++ +++ DL ++ DAK V+ ++LT EY+++E + L++ L Sbjct: 121 GNSIQQPKNIYRIADLELDADAKIASVKQVPLNLTATEYRLLEHFIKNQRKVLSRIQLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D ++DV+I LRKKL + K YI+TV+G GY+++E+ Sbjct: 181 SVWDIDFNLGTNVVDVYINYLRKKLDSKNPAK-YIQTVFGMGYMMKES 227 >gi|239626319|ref|ZP_04669350.1| response regulator receiver protein [Clostridiales bacterium 1_7_47_FAA] gi|239516465|gb|EEQ56331.1| response regulator receiver protein [Clostridiales bacterium 1_7_47FAA] Length = 234 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ L+ +I+L L+ + G++ Y +D IILD L + G Sbjct: 7 MRILLVEDDRELSGTIKLQLEQAGYETDCCGQGQEAFYYASEYPYDVIILDRMLPQMDGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL+ LR I+TPV I + + + D++ GL +GADDY+ KP+ EL+ARIRA+ RR Sbjct: 67 SVLQGLRRMDITTPVIITTALDGVNDRIDGLDAGADDYLVKPYAAGELLARIRAVTRRPG 126 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +G A++ +++++ D + + + L+ +E ++E L L + + L+ Sbjct: 127 RLEQGRAKTF---SNITMDTDRRELAGPSGTVSLSRREAALMEYLMRNAGQVLPRGLILS 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ E E +D +I LR++L A G I+TV G GY L + Sbjct: 184 YIWGPDSEVEDGNLDNYIYFLRRRL-KAVGTAAQIKTVHGIGYRLEDGG 231 >gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676] gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676] Length = 243 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 77 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + +N+ ++TV + G RI+LT EY ++ L++ +N T E Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEIY 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I +LR K+ +I+ VWG GY Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 239 >gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 232 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD ALA + L+ E+F V T GE+ I L + D ++LD + + G E Sbjct: 5 RVLLVEDDAALAELVSWHLEREDFEVERTADGEEAILLARETPPDLVLLDWMIEGVSGIE 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR + P+ +L+ ED+VRGL++GADDY++KPF+ ELVAR+ A++RR Sbjct: 65 VCRRLRRLADTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A + D+ ++ + V G I L E+++++ ++E L+ + Sbjct: 125 RPALAGERLSYADIEMDTASHRVRRGGSPISLGPTEFRLLKHFLEHPGRVFSRERLLDSV 184 Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + GRD + E + +DV I +LRK + N A + I TV GY L Sbjct: 185 W-GRDSDIEPRTVDVHIRRLRKAI-NLADAPDLIRTVRSAGYAL 226 >gi|189423131|ref|YP_001950308.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189419390|gb|ACD93788.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 235 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD+ L +E L +E F V G G E + I+LD+ L + GF+ Sbjct: 4 RILVIDDDRELCGLLEEYLVAEGFAVESVHTGPQGAEQGSQGNYALIVLDVMLPGLNGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR +R + S PV +L+ D++ GL+ GADDY+ KPFN ELVARIRAI RR Sbjct: 64 VLRRIR-GESSVPVVMLTARGEEVDRIVGLEMGADDYLPKPFNPRELVARIRAIQRRQST 122 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174 A++++V GDL ++ +TV +QG R + LT E+ ++ELL + ++++ Sbjct: 123 AQKDGTAAEAVLVVGDLVLDPGRRTV-LQGERSVVLTSIEFSVLELLLAQAGRVISRDDI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + + IDV + LR+KL A G I++V G GY+ Sbjct: 182 CSQALGRQLNSFDRSIDVHVSSLRRKLGPAGDGSERIKSVRGIGYI 227 >gi|90411444|ref|ZP_01219455.1| probable two-component system response regulator (Pho family) [Photobacterium profundum 3TCK] gi|90327657|gb|EAS44000.1| probable two-component system response regulator (Pho family) [Photobacterium profundum 3TCK] Length = 225 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ ++ + + V G+ G +L +D I+LDL L G Sbjct: 1 MHILVIEDDPHISGFLKQGFEELQYQVTCCGDGKQGYQLATMELYDLIVLDLMLPTWDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVLR +R P+ ILS S+E++V GLQSGADDY+ KPF EL AR + + RR Sbjct: 61 EVLRRIRGEGHQIPILILSARHSVEERVLGLQSGADDYLVKPFAFAELAARCQILSRRQV 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + + DL+++L + + GH I L +E+ +++L + +K + L +++ Sbjct: 121 VSHNANQLSYHDLTLDLLTRKLCRDGHDILLKQREFALMQLFIQQPERVFSKTVILENIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +P+ ++DV +C+LR ++ + I T+ G GYVL+ Sbjct: 181 GFQFDPQTNVVDVLVCRLRAQV-DKGFEMPLIHTIRGVGYVLK 222 >gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus 132] gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754] gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus MR1] gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796] gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus] gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus] gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus subsp. aureus TW20] gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus aureus 04-02981] gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754] gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796] gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED133] gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS03] gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS00] gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS01] gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus T0131] gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21189] gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21172] gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21193] Length = 241 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +++ L+ E+F ++ G++ EL + I+LDL L ++ G +V Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 65 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V ++LT KEY+++ L+ N +E Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 240 >gi|260770826|ref|ZP_05879755.1| response regulator [Vibrio furnissii CIP 102972] gi|260614063|gb|EEX39253.1| response regulator [Vibrio furnissii CIP 102972] Length = 228 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD L ++ +L E F V + GE G+ D I+LD+ + + G E Sbjct: 4 ILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAGLHAVN-DSVDLILLDVMMPKLNGMET 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR K TPV +L+ D+V GL+ GADDY+ KPF+ EL+ARIRAI+RR+ H Sbjct: 63 LKKLR-EKWQTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTGNH 121 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 QS +I DL + + QG + LT E+ ++ TLTKEM + Sbjct: 122 TQSKPTDMIECQDLQLYPGKQEAYCQGQLLDLTTTEFALLTHFVQNPGETLTKEMLSLDV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R + ID+ + LRKKL + GK I+T+ GRGY++ Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERSDGKPRIKTLRGRGYLM 224 >gi|253579017|ref|ZP_04856288.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849960|gb|EES77919.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 234 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + + I LK+ ++ + G I + D ++LDLGL D+ G EV Sbjct: 6 ILVVEDDRPIRNLIVTTLKTHDYKYLAAENGSSAILEASSHNPDIVLLDLGLPDMEGVEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ +R + P+ ++S S DK+ L +GADDYI+KPF+ EEL+ARIR RR Sbjct: 66 IKKIRTWS-NMPIIVISARSEDTDKIEALDAGADDYITKPFSVEELLARIRVTQRRLAVM 124 Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G S+ G L ++ A ++G +HLT EY+++ LLS LT Sbjct: 125 QSGEQLESSVFENGGLKIDYTAGCTYLKGEELHLTPIEYKLLCLLSRNVGKVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +V + VF+ LRKKL G YI+T G GY Sbjct: 185 QIWGRCSDNDVASLRVFMATLRKKLEPEKNGVQYIQTHIGIGY 227 >gi|210622859|ref|ZP_03293382.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275] gi|210153964|gb|EEA84970.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275] Length = 233 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 119/225 (52%), Gaps = 11/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+K L + +K V V GE+GIE K D I+LD+ + I GFEV Sbjct: 7 ILIIDDEKDLVKLLGKKIKDNGHEVLVAFDGEEGIEKSKLNP-DLILLDIMMPKIDGFEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ LS S DK+RG G DDYI+KPF EL+A+I A +RR + Sbjct: 66 CQKIR-DNVVCPIIFLSARQSETDKIRGFNLGGDDYITKPFGLRELLAKIEANLRREK-R 123 Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +Q L + G+LS+++ + VEV G I LT EY+++ELL+L TKE Sbjct: 124 SQYLNEENKRRKLYFGNLSLDIKDRVVEVCGKDIPLTKTEYEIVELLALNAGQVFTKEQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + I K+R+K S + YI TVWG GY Sbjct: 184 YEKVWGYDKGGDNTTVVEMIKKIRRKFSTIDDTEQYISTVWGIGY 228 >gi|119488832|ref|ZP_01621794.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119454993|gb|EAW36135.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 624 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 126/231 (54%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILL+EDDK LA +E L + Y DL DG+ EL + +D I+LDL L + Sbjct: 1 MRILLVEDDKGLAQGLEDALTHQR---YAVDLAWDGLMGWELAEALTYDLILLDLLLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G + LR TPV +++ +S KV GL +GADDY+ KPF EL+ARIRA++R Sbjct: 58 DGINFCKRLRNQGDFTPVLLMTAQNSSSQKVEGLDAGADDYLVKPFEVSELLARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQ-GHR-IHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R ++ G S+ LD K +V G + + LT KEY+++EL + ++ L Sbjct: 118 RGNSALSPILEWG--SLRLDPKNCQVTYGDKLLKLTAKEYELLELFLRHPHRIFSQSALL 175 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +HL+ D P + I LR+KL + ++ IETV+G GY L+ A Sbjct: 176 DHLWSFDDPPSESAVRTQIKGLRQKLKQSGAVRDLIETVYGLGYRLKSTAP 226 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI--PG 59 R+L+++DD ALA I + + + + L D ++LDL D G Sbjct: 371 RLLIVDDDLALAEGIATVANTRKIYTEIAISPQQARTLIAENPLDIVLLDLSFPDSTEAG 430 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FE+L L S PV + + S D+V+ + G ++ KP + +++ I ++ S Sbjct: 431 FELLEELNSHSTSLPVIVFTAKESFADRVKVARLGGRGFLQKPISPSQVLDTITRVLSPS 490 Query: 120 RGHAQSLIV 128 S+++ Sbjct: 491 SPKRASILI 499 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 10/124 (8%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++++ + I +L+ F + + D + + + + +ILD + D+ G E+ Sbjct: 497 ILIVDNEPEILDRIRSVLEPWGFYLILLDDPQQFWQTLEQSTPELLILDFAMPDLSGVEL 556 Query: 63 LRALRVAKISTP------VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + +R + P + ILS + + + +GADDYI KP + E +AR+ + Sbjct: 557 CQVVR----NDPRWQDLSIIILSEERNRQIVEQVWNAGADDYIQKPLVEPEFIARVLNCL 612 Query: 117 RRSR 120 R++ Sbjct: 613 ERNQ 616 >gi|118471523|ref|YP_887235.1| DNA-binding response regulator, PhoP family protein [Mycobacterium smegmatis str. MC2 155] gi|118172810|gb|ABK73706.1| DNA-binding response regulator, PhoP family protein [Mycobacterium smegmatis str. MC2 155] Length = 255 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 126/229 (55%), Gaps = 11/229 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF---DAIILDLGLTDI 57 +R+LL++D++AL + +++ L+ E +V D+ D + + Y D ++LD+ L D Sbjct: 30 IRVLLVDDERALTNLVQMALQYEG---WVIDVAHDAAQAVEKYRANLPDLLVLDIMLPDT 86 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R TP L+ S+ D+V GL +G DDY++KPF+ EELVAR+R ++R Sbjct: 87 DGLGVLEQIRSFGTYTPTLFLTARDSVADRVEGLTAGGDDYMTKPFSLEELVARLRGLLR 146 Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R+ A + GDL+++ + TV I LT E+Q++ +L L+++ Sbjct: 147 RTAYLTPAADETLRVGDLTLDASSHTVTRGDTPIALTSTEFQLLRVLMRHPRKALSRDDI 206 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L +++ I+D+++ LRKK+ G + I TV G GY+LR Sbjct: 207 LRQVWEYDFGGRTSIVDLYVSYLRKKIDT--GREPMIHTVRGVGYMLRP 253 >gi|24112549|ref|NP_707059.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 2a str. 301] gi|26247378|ref|NP_753418.1| DNA-binding transcriptional regulator PhoP [Escherichia coli CFT073] gi|30062677|ref|NP_836848.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 2a str. 2457T] gi|74311689|ref|YP_310108.1| DNA-binding transcriptional regulator PhoP [Shigella sonnei Ss046] gi|82544383|ref|YP_408330.1| DNA-binding transcriptional regulator PhoP [Shigella boydii Sb227] gi|82777259|ref|YP_403608.1| DNA-binding transcriptional regulator PhoP [Shigella dysenteriae Sd197] gi|91210286|ref|YP_540272.1| DNA-binding transcriptional regulator PhoP [Escherichia coli UTI89] gi|110641307|ref|YP_669037.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 536] gi|110805158|ref|YP_688678.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 5 str. 8401] gi|117623315|ref|YP_852228.1| DNA-binding transcriptional regulator PhoP [Escherichia coli APEC O1] gi|157159002|ref|YP_001462399.1| DNA-binding transcriptional regulator PhoP [Escherichia coli E24377A] gi|170681232|ref|YP_001744047.1| DNA-binding transcriptional regulator PhoP [Escherichia coli SMS-3-5] gi|187730593|ref|YP_001879938.1| DNA-binding transcriptional regulator PhoP [Shigella boydii CDC 3083-94] gi|191168321|ref|ZP_03030113.1| DNA-binding response regulator PhoP [Escherichia coli B7A] gi|191173098|ref|ZP_03034631.1| DNA-binding response regulator PhoP [Escherichia coli F11] gi|193066242|ref|ZP_03047294.1| DNA-binding response regulator PhoP [Escherichia coli E22] gi|194429552|ref|ZP_03062073.1| DNA-binding response regulator PhoP [Escherichia coli B171] gi|194433627|ref|ZP_03065903.1| DNA-binding response regulator PhoP [Shigella dysenteriae 1012] gi|194437080|ref|ZP_03069179.1| DNA-binding response regulator PhoP [Escherichia coli 101-1] gi|209918387|ref|YP_002292471.1| DNA-binding transcriptional regulator PhoP [Escherichia coli SE11] gi|218553708|ref|YP_002386621.1| DNA-binding transcriptional regulator PhoP [Escherichia coli IAI1] gi|218558012|ref|YP_002390925.1| DNA-binding transcriptional regulator PhoP [Escherichia coli S88] gi|218689083|ref|YP_002397295.1| DNA-binding transcriptional regulator PhoP [Escherichia coli ED1a] gi|218694664|ref|YP_002402331.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 55989] gi|218700347|ref|YP_002407976.1| DNA-binding transcriptional regulator PhoP [Escherichia coli IAI39] gi|218704604|ref|YP_002412123.1| DNA-binding transcriptional regulator PhoP [Escherichia coli UMN026] gi|227886513|ref|ZP_04004318.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 83972] gi|237706884|ref|ZP_04537365.1| virulence transcriptional regulatory protein phoP [Escherichia sp. 3_2_53FAA] gi|253773846|ref|YP_003036677.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161237|ref|YP_003044345.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B str. REL606] gi|256018614|ref|ZP_05432479.1| DNA-binding transcriptional regulator PhoP [Shigella sp. D9] gi|260843446|ref|YP_003221224.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O103:H2 str. 12009] gi|260854812|ref|YP_003228703.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O26:H11 str. 11368] gi|260867559|ref|YP_003233961.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O111:H- str. 11128] gi|293409496|ref|ZP_06653072.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B354] gi|293414421|ref|ZP_06657070.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B185] gi|293433418|ref|ZP_06661846.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B088] gi|298380261|ref|ZP_06989866.1| DNA-binding transcriptional regulator PhoP [Escherichia coli FVEC1302] gi|300816833|ref|ZP_07097053.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300821086|ref|ZP_07101235.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300896841|ref|ZP_07115336.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300922660|ref|ZP_07138757.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300928312|ref|ZP_07143848.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300938702|ref|ZP_07153426.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300975596|ref|ZP_07173075.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300982385|ref|ZP_07176083.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|301024584|ref|ZP_07188256.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301051080|ref|ZP_07197914.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|301328495|ref|ZP_07221561.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|306814020|ref|ZP_07448193.1| DNA-binding transcriptional regulator PhoP [Escherichia coli NC101] gi|307310093|ref|ZP_07589743.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309788200|ref|ZP_07682806.1| transcriptional regulatory protein phoP [Shigella dysenteriae 1617] gi|309796524|ref|ZP_07690931.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|331646389|ref|ZP_08347492.1| transcriptional regulatory protein PhoP [Escherichia coli M605] gi|331652181|ref|ZP_08353200.1| transcriptional regulatory protein PhoP [Escherichia coli M718] gi|331657194|ref|ZP_08358156.1| transcriptional regulatory protein PhoP [Escherichia coli TA206] gi|331662541|ref|ZP_08363464.1| transcriptional regulatory protein PhoP [Escherichia coli TA143] gi|331667531|ref|ZP_08368395.1| transcriptional regulatory protein PhoP [Escherichia coli TA271] gi|331682636|ref|ZP_08383255.1| transcriptional regulatory protein PhoP [Escherichia coli H299] gi|332279682|ref|ZP_08392095.1| DNA-binding response regulator in two-component system response regulatory system with PhoQ [Shigella sp. D9] gi|81724595|sp|Q83RR0|PHOP_SHIFL RecName: Full=Virulence transcriptional regulatory protein phoP gi|81741528|sp|Q8CXZ9|PHOP_ECOL6 RecName: Full=Transcriptional regulatory protein phoP gi|26107779|gb|AAN79978.1|AE016759_252 Transcriptional Regulatory protein phoP [Escherichia coli CFT073] gi|24051444|gb|AAN42766.1| transcriptional regulatory protein [Shigella flexneri 2a str. 301] gi|30040925|gb|AAP16655.1| transcriptional regulatory protein [Shigella flexneri 2a str. 2457T] gi|73855166|gb|AAZ87873.1| transcriptional regulatory protein [Shigella sonnei Ss046] gi|81241407|gb|ABB62117.1| transcriptional regulatory protein [Shigella dysenteriae Sd197] gi|81245794|gb|ABB66502.1| transcriptional regulatory protein [Shigella boydii Sb227] gi|91071860|gb|ABE06741.1| transcriptional regulatory protein [Escherichia coli UTI89] gi|110342899|gb|ABG69136.1| transcriptional regulatory protein PhoP [Escherichia coli 536] gi|110614706|gb|ABF03373.1| transcriptional regulatory protein [Shigella flexneri 5 str. 8401] gi|115512439|gb|ABJ00514.1| transcriptional regulatory protein PhoP [Escherichia coli APEC O1] gi|157081032|gb|ABV20740.1| DNA-binding response regulator PhoP [Escherichia coli E24377A] gi|170518950|gb|ACB17128.1| DNA-binding response regulator PhoP [Escherichia coli SMS-3-5] gi|187427585|gb|ACD06859.1| DNA-binding response regulator PhoP [Shigella boydii CDC 3083-94] gi|190901616|gb|EDV61373.1| DNA-binding response regulator PhoP [Escherichia coli B7A] gi|190906643|gb|EDV66249.1| DNA-binding response regulator PhoP [Escherichia coli F11] gi|192926091|gb|EDV80733.1| DNA-binding response regulator PhoP [Escherichia coli E22] gi|194412426|gb|EDX28727.1| DNA-binding response regulator PhoP [Escherichia coli B171] gi|194418056|gb|EDX34149.1| DNA-binding response regulator PhoP [Shigella dysenteriae 1012] gi|194424063|gb|EDX40051.1| DNA-binding response regulator PhoP [Escherichia coli 101-1] gi|195182817|dbj|BAG66393.1| two-component response regulator protein [Escherichia coli O111:H-] gi|209911646|dbj|BAG76720.1| two-component transcriptional regulator [Escherichia coli SE11] gi|218351396|emb|CAU97102.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli 55989] gi|218360476|emb|CAQ98030.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli IAI1] gi|218364781|emb|CAR02471.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli S88] gi|218370333|emb|CAR18136.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli IAI39] gi|218426647|emb|CAR07475.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli ED1a] gi|218431701|emb|CAR12583.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli UMN026] gi|222032882|emb|CAP75622.1| Transcriptional regulatory protein phoP [Escherichia coli LF82] gi|226898094|gb|EEH84353.1| virulence transcriptional regulatory protein phoP [Escherichia sp. 3_2_53FAA] gi|227836717|gb|EEJ47183.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 83972] gi|242376932|emb|CAQ31653.1| phoP [Escherichia coli BL21(DE3)] gi|253324890|gb|ACT29492.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973138|gb|ACT38809.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli B str. REL606] gi|253977352|gb|ACT43022.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli BL21(DE3)] gi|257753461|dbj|BAI24963.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O26:H11 str. 11368] gi|257758593|dbj|BAI30090.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O103:H2 str. 12009] gi|257763915|dbj|BAI35410.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O111:H- str. 11128] gi|281178240|dbj|BAI54570.1| two-component transcriptional regulator [Escherichia coli SE15] gi|281600563|gb|ADA73547.1| Virulence transcriptional regulatory protein phoP [Shigella flexneri 2002017] gi|291324237|gb|EFE63659.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B088] gi|291434479|gb|EFF07452.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B185] gi|291469964|gb|EFF12448.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B354] gi|294490321|gb|ADE89077.1| DNA-binding response regulator PhoP [Escherichia coli IHE3034] gi|298279959|gb|EFI21467.1| DNA-binding transcriptional regulator PhoP [Escherichia coli FVEC1302] gi|300297252|gb|EFJ53637.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300307222|gb|EFJ61742.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300359323|gb|EFJ75193.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300396509|gb|EFJ80047.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300410259|gb|EFJ93797.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300421009|gb|EFK04320.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300456347|gb|EFK19840.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300463698|gb|EFK27191.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300526385|gb|EFK47454.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300530607|gb|EFK51669.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300845102|gb|EFK72862.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|305852657|gb|EFM53105.1| DNA-binding transcriptional regulator PhoP [Escherichia coli NC101] gi|306909811|gb|EFN40305.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|307553131|gb|ADN45906.1| DNA-binding response regulator PhoP [Escherichia coli ABU 83972] gi|307627398|gb|ADN71702.1| DNA-binding transcriptional regulator PhoP [Escherichia coli UM146] gi|308119836|gb|EFO57098.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|308924052|gb|EFP69553.1| transcriptional regulatory protein phoP [Shigella dysenteriae 1617] gi|312945692|gb|ADR26519.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O83:H1 str. NRG 857C] gi|313650392|gb|EFS14799.1| transcriptional regulatory protein phoP [Shigella flexneri 2a str. 2457T] gi|315060407|gb|ADT74734.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli W] gi|315287473|gb|EFU46884.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315293102|gb|EFU52454.1| response regulator receiver domain protein [Escherichia coli MS 153-1] gi|315296599|gb|EFU55894.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|320175636|gb|EFW50728.1| Transcriptional regulatory protein PhoP [Shigella dysenteriae CDC 74-1112] gi|320179170|gb|EFW54128.1| Transcriptional regulatory protein PhoP [Shigella boydii ATCC 9905] gi|320184387|gb|EFW59198.1| Transcriptional regulatory protein PhoP [Shigella flexneri CDC 796-83] gi|320195867|gb|EFW70492.1| Transcriptional regulatory protein PhoP [Escherichia coli WV_060327] gi|320201026|gb|EFW75610.1| Transcriptional regulatory protein PhoP [Escherichia coli EC4100B] gi|323153124|gb|EFZ39389.1| transcriptional regulatory protein phoP [Escherichia coli EPECa14] gi|323163674|gb|EFZ49496.1| transcriptional regulatory protein phoP [Escherichia coli E128010] gi|323165638|gb|EFZ51425.1| transcriptional regulatory protein phoP [Shigella sonnei 53G] gi|323172493|gb|EFZ58130.1| transcriptional regulatory protein phoP [Escherichia coli LT-68] gi|323179334|gb|EFZ64904.1| transcriptional regulatory protein phoP [Escherichia coli 1180] gi|323185686|gb|EFZ71047.1| transcriptional regulatory protein phoP [Escherichia coli 1357] gi|323187618|gb|EFZ72925.1| transcriptional regulatory protein phoP [Escherichia coli RN587/1] gi|323379033|gb|ADX51301.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323947566|gb|EGB43570.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323953183|gb|EGB49049.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323957956|gb|EGB53668.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|323962729|gb|EGB58307.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323967069|gb|EGB62495.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323973280|gb|EGB68469.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323976499|gb|EGB71587.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324005953|gb|EGB75172.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324013223|gb|EGB82442.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|324017498|gb|EGB86717.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|324117299|gb|EGC11206.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|327253834|gb|EGE65463.1| transcriptional regulatory protein phoP [Escherichia coli STEC_7v] gi|331045141|gb|EGI17268.1| transcriptional regulatory protein PhoP [Escherichia coli M605] gi|331050459|gb|EGI22517.1| transcriptional regulatory protein PhoP [Escherichia coli M718] gi|331055442|gb|EGI27451.1| transcriptional regulatory protein PhoP [Escherichia coli TA206] gi|331060963|gb|EGI32927.1| transcriptional regulatory protein PhoP [Escherichia coli TA143] gi|331065116|gb|EGI37011.1| transcriptional regulatory protein PhoP [Escherichia coli TA271] gi|331080267|gb|EGI51446.1| transcriptional regulatory protein PhoP [Escherichia coli H299] gi|332089268|gb|EGI94374.1| transcriptional regulatory protein phoP [Shigella boydii 5216-82] gi|332092880|gb|EGI97948.1| transcriptional regulatory protein phoP [Shigella dysenteriae 155-74] gi|332094417|gb|EGI99466.1| transcriptional regulatory protein phoP [Shigella boydii 3594-74] gi|332102034|gb|EGJ05380.1| DNA-binding response regulator in two-component system response regulatory system with PhoQ [Shigella sp. D9] gi|332758319|gb|EGJ88642.1| transcriptional regulatory protein phoP [Shigella flexneri 4343-70] gi|332767375|gb|EGJ97569.1| response regulator [Shigella flexneri 2930-71] gi|333004967|gb|EGK24487.1| transcriptional regulatory protein phoP [Shigella flexneri VA-6] gi|333005526|gb|EGK25044.1| transcriptional regulatory protein phoP [Shigella flexneri K-218] gi|333008362|gb|EGK27836.1| transcriptional regulatory protein phoP [Shigella flexneri K-272] gi|333019381|gb|EGK38664.1| transcriptional regulatory protein phoP [Shigella flexneri K-304] gi|333019849|gb|EGK39121.1| transcriptional regulatory protein phoP [Shigella flexneri K-227] Length = 223 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ ++ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S P+ +L+ S +DKV L +GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 >gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] Length = 247 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +++ L+ E+F ++ G++ EL + I+LDL L ++ G +V Sbjct: 11 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 71 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 129 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V ++LT KEY+++ L+ N +E Sbjct: 130 TVEQSEPHARDVIKFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 189 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + DE Sbjct: 190 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 246 >gi|240142635|ref|YP_002967148.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] gi|240012582|gb|ACS43807.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] Length = 220 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L+ + L V D F ++LDL L D G Sbjct: 1 MRILVVEDDPILSDGLRAGLGLSGATVECVGTCADADAALATSRFGVVVLDLMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR TPV +L+ ++ D++ GL GADDY+ KPF+ +EL ARIRA+VRR+ Sbjct: 61 EVLRGLRRRDDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G + ++ V V G + ++ +E+ ++ L R N +K LY Sbjct: 121 GRASAGLEHGGIRLDPAGLVVTVDGVNVPVSRREFMVLAALMERPNVLRSKTELEERLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E E ++V + LR K+ GK IETV G GY +R +A Sbjct: 181 WQEEVESNAVEVHVHNLRAKI-----GKQAIETVRGVGYRMRASA 220 >gi|225388657|ref|ZP_03758381.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme DSM 15981] gi|225045255|gb|EEG55501.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme DSM 15981] Length = 235 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A IE+ L++EN +VY GE+ + +FD ILD+ L DI G Sbjct: 4 KILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDISGLS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +++R + + PV +LS DK+ GL GADDYI+KPF ELVAR++A +RR + Sbjct: 64 ICQSIRSKEYTYPVIMLSAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKK 123 Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + A + L++N+ + G + LT E+ ++ +L R+ + ++ E Sbjct: 124 YNVGAAVPAADEVFQYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAEE 183 Query: 174 FLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + I V I LR+K+ + YI+TVWG GY + E Sbjct: 184 LFHEIWQEEYYNKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKIGE 234 >gi|218233154|ref|YP_002369467.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229048376|ref|ZP_04193944.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676] gi|229152869|ref|ZP_04281052.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550] gi|218161111|gb|ACK61103.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228630689|gb|EEK87335.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550] gi|228723101|gb|EEL74478.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676] Length = 229 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|300784531|ref|YP_003764822.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794045|gb|ADJ44420.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 222 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 4/220 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +++ED++ LA +I L+ E V V G+DG E +D ++LD L + G E+ Sbjct: 1 MVVEDEEPLADAIARGLRREGMAVDVALTGDDGHEKAAVTRYDVVLLDRDLPGMSGDELC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R + + T V +L+ SS+ D+V GL GADDY++KPF ELVAR+RA+ RR+ A Sbjct: 61 REIVASGELTRVLMLTASSSVSDRVEGLSLGADDYLAKPFAFPELVARVRALGRRATPAA 120 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 L+ GD+ ++ +TV + LT KE+ ++E+L + ++ E L ++D Sbjct: 121 PPLLTAGDVELDPAKRTVRRASGPVELTRKEFGVLEVLLQAAGSVVSSEELLERVWDENA 180 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P + V + LRKKL G IETV G GY + E Sbjct: 181 DPFTTTVRVTVMTLRKKL----GEPGIIETVVGSGYRVPE 216 >gi|284920956|emb|CBG34019.1| two-component response regulator [Escherichia coli 042] Length = 223 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ ++ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNTLLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S P+ +L+ S +DKV L +GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 >gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 226 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 132/229 (57%), Gaps = 14/229 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++ +E+ LK E F+V+ G++G+ + K+ +D I+LD+ L + G E Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ I DKV G GADDY++KPF+ EEL+ARI+A++RR++ Sbjct: 64 VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 HA--QSLIVTGDLSVNLDAKTV--EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL++N V + + I L+ +E+++++ L L K L+++ L Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + Y G D I+D++I LR K+ K +I+TV G G++ + Sbjct: 183 VWGFDYIGND----NILDLYIKYLRDKIDRPYERK-FIQTVRGIGFIFK 226 >gi|227513408|ref|ZP_03943457.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227524551|ref|ZP_03954600.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227083281|gb|EEI18593.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227088226|gb|EEI23538.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 231 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 129/233 (55%), Gaps = 16/233 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTDI 57 ILL+ED++ L+ + L+ EN+ + L DG + YE + IILD L + Sbjct: 5 ILLVEDEEGLSSYLTTELQFENYTII---LATDGKQALDTYESMRGQLNLIILDWMLPKL 61 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR +R P+ +++ + DKV GL +GADDYI+KPF EEL+ARIR ++R Sbjct: 62 DGLEVLRRIR-QNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLR 120 Query: 118 RSRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT--TLTKEM 173 S+ A S L DL++N ++ V I LT +EY++ LL+L KN T+T++ Sbjct: 121 HSQNQATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYEL--LLTLIKNAGETMTRDE 178 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 LN ++ E + ++DV+I LR K+ K I TV G GYVL N + Sbjct: 179 LLNLVWGVDFEGQPNVVDVYIRYLRNKVDRNF-KKTLIHTVRGVGYVLSANYQ 230 >gi|255305488|ref|ZP_05349660.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile ATCC 43255] Length = 230 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ L +E LK++ V + G+ GIEL K E D IILD+ + + GFE Sbjct: 3 KILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIELSK-QEPDLIILDIMMPKMDGFE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +A+R + PV LS S DK++GL G DDY++KPF EL+ARI A +RR + Sbjct: 62 VCQAIR-DDVLCPVIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +S + G L + + + +++ G I LT EY ++ELL+L ++E Sbjct: 121 SQYINEENKRSTLYFGKLWLYMKERAIKIDGKDIDLTKIEYGIVELLALHAGQVFSREQI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + + + K+R K S K YI TVWG GY Sbjct: 181 YEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGY 225 >gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87] gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87] Length = 241 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ G++ +L + I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 65 ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSA 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 NSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + I+TVWG GY A DE Sbjct: 184 LKDVWHYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEVKASDEPT 240 >gi|262377611|ref|ZP_06070832.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262307498|gb|EEY88640.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 226 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILL+ED++ ++ L Y+TD DG+ E+D IILD+ L + Sbjct: 1 MRILLVEDEQKTGDYLKQGLSEAG---YITDWVTDGLTGKHQALSEEYDLIILDVMLPGL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ ++ +R + + P+ L+ IED+V+GL+ GADDY+ KPF EL+ARI+ ++R Sbjct: 58 NGWNIINDIRSSGKTMPILFLTARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLR 117 Query: 118 RSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + S I+ DL ++L + V G RI LT KE+ ++EL R+ L + + + Sbjct: 118 RGQQREDSNIIKIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIAS 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +++V I +LR K+ + K I+ + G GYVL Sbjct: 178 QIWDMNFDSDTNVVEVAIKRLRSKVDSNFTPK-LIQNIRGMGYVL 221 >gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] Length = 231 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ ++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKLYTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RR Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ + +I + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGY 227 >gi|226943895|ref|YP_002798968.1| response regulator, transcriptional regulatory protein (two-component), ColR [Azotobacter vinelandii DJ] gi|226718822|gb|ACO77993.1| response regulator, transcriptional regulatory protein (two-component), ColR [Azotobacter vinelandii DJ] Length = 227 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED++ + ++ L+ + + V G G+ L ++D I+LD+ L I G+ Sbjct: 1 MRILVIEDNRDILANVLDYLELKGYTVDCAQDGLSGLHLAATGQYDLIVLDIMLPGIDGY 60 Query: 61 EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V LR A TP+ +L+ +++D+++GL SGADDY+ KPF ELVARI A++RR+ Sbjct: 61 QVCERLRRDAGSETPIIMLTARDALDDRLQGLNSGADDYLLKPFALSELVARIEAVLRRT 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + + GDL +LD V G ++ L Y+++ +L + + +E N L+ Sbjct: 121 QGSRKRQLQVGDLIYDLDTLNVSRAGKQLRLNPIGYKLLAILMQKSPAVVRREFLENALW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 G D PE + I +LR+ L K + T+ G GY L EN Sbjct: 181 -GDDLPESDSLRSHIHQLRQALDKPF-DKPLLHTIHGVGYRLAENP 224 >gi|218281202|ref|ZP_03487726.1| hypothetical protein EUBIFOR_00289 [Eubacterium biforme DSM 3989] gi|218217590|gb|EEC91128.1| hypothetical protein EUBIFOR_00289 [Eubacterium biforme DSM 3989] Length = 225 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/201 (34%), Positives = 116/201 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A++I +L+ + + V + G++G++L +D ILD+ L + GF Sbjct: 1 MNILVVDDEKNIAYAIAQILEEQKWQVTMAYDGQEGLDLALSGYYDVAILDIMLPGMNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ +R KI TP +LS + I DKV+GL GADDY++KPF+ ELVARI A+ RR Sbjct: 61 EIVQKMRANKIETPTLLLSALDEIPDKVKGLNVGADDYMTKPFSAAELVARINALTRRKG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DLS+ LD + IHL KE+++++ L +K+ + ++ Sbjct: 121 EVIVHELKYEDLSLQLDTCELYCASQHIHLGYKEFEIMKQLMSHPEMITSKDDLIVSVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKL 201 + ++V+I LRKKL Sbjct: 181 SESDAMDNNVEVYISFLRKKL 201 >gi|197250760|ref|YP_002147681.1| DNA-binding response regulator TctD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214463|gb|ACH51860.1| DNA-binding response regulator TctD [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 224 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L F V G L + +LD+ + + G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR + PV +L+ S++ D+V+GL GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G+L + D +QG + LT +E ++ +L R+ ++++ ++ Sbjct: 121 GQVHEIQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + I+++I +LRKKL G I T+ G GYVL Sbjct: 180 LNDEVSPESIELYIHRLRKKLQ---GSDVRITTLRGLGYVL 217 >gi|78221908|ref|YP_383655.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78193163|gb|ABB30930.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 220 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILL+EDD+ + ++E LK Y D DGI + + E+ +ILDLGL Sbjct: 1 MRILLVEDDRMIGEAVEQALKDA---AYAVDWVRDGISASDAVETGEYQLVILDLGLPGR 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R + V I++ +++D++RGL GADDY+ KPF EL+ARIRA+ R Sbjct: 58 DGLGVLERMRGDGNNAAVLIVTARDALDDRIRGLDLGADDYLVKPFAVGELLARIRAVSR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G A L+ G ++++ +K R LT +E+ +++ L +R L+++ Sbjct: 118 RQTGSAAPLLTNGVVTLDPVSKEAVCGERRCRLTAREFSLLQALLVRPGAILSRDELETR 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y +E E ++ I +RKKL G I V G G+++ N Sbjct: 178 IYGWNEEVESNAVEFLIHSVRKKL-----GSESIRNVRGMGWMVDRN 219 >gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare ATCC 13950] Length = 239 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + LK + F V G ++ + DA+ILD+ + + GF Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 VLR LR I P L+ S++DK+ GL G DDY++KPF+ EE+VAR+R I+RR+ + Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A+ + + D+ ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K + T+ G GYVLRE Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 237 >gi|225571268|ref|ZP_03780264.1| hypothetical protein CLOHYLEM_07365 [Clostridium hylemonae DSM 15053] gi|225159744|gb|EEG72363.1| hypothetical protein CLOHYLEM_07365 [Clostridium hylemonae DSM 15053] Length = 228 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED++ L+ +I L+ + V GE+ + L E+D +ILDL L + G Sbjct: 1 MKLLLVEDEEMLSRTIAKGLEILGYAVDRAYDGEEALYLYGLNEYDLMILDLNLPKLDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R V ILS +S+EDKV GL SG++DY++KPF +EL ARIR+++RR+ Sbjct: 61 DVLRQIRKEDEEFRVLILSARNSLEDKVDGLDSGSNDYLTKPFEFKELEARIRSLLRRNF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ AK V ++ LT KEY ++E L + + E + H +D Sbjct: 121 TTRNRVLSCGCLKLDTAAKRVYCGEKQVELTRKEYALLEYLFHHNDRMIRAEELIEHAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I LRKKL +AAG + YI + G GY L Sbjct: 181 SETDLFSNSFRFHIHSLRKKL-DAAGAEGYIVSQRGLGYRL 220 >gi|170760898|ref|YP_001785689.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407887|gb|ACA56298.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ LK NF+V + GE+GIE + ++ + ++LD+ L + G E Sbjct: 3 KILIVEDEISIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + +L+ S DKV GL+ GADDYI KPFN EL RI+AI+RR Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDIDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S +I G ++L +K + I +T EY ++++ ++ L+ + Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + KI+DV I +LR K+ +I+TVWG GY Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGY 223 >gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 227 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++ ++ L ENF + G G++ F++ D IILD+ L + G + Sbjct: 3 KILIIEDDPQISSIVQKGLTEENFETKTANNGLKGLDEFHFWKPDLIILDIMLPGLNGIQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R P+ +L+ + + E+ GL SGADDY+ KPF EL AR+R+++RR Sbjct: 63 VCSKIRETS-QVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLLRRIEN 121 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +L DL ++ D KTV GH I LT EY+++ L + ++ L + Sbjct: 122 QVTASSTLFSFSDLVIDDDRKTVIRNGHLITLTSTEYRLLLLFMMSPKKVFSRIDILEEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E ++DV++ LRKKL G I TV G GYV+RE Sbjct: 182 WGIDFESGTNVVDVYVNYLRKKLMQ-FGDSKLIHTVIGMGYVMRE 225 >gi|331697739|ref|YP_004333978.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326952428|gb|AEA26125.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 247 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 121/229 (52%), Gaps = 18/229 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDD +A ++ L G ++ D ++LDLGL D+ G Sbjct: 1 MHILLVEDDDRVAAALRPALHRHGMTTTRLAQGRGAVD--HLSGVDVVLLDLGLPDVDGV 58 Query: 61 EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V RA+R ++S PV ++S ++D++ GL SGADDYI KP++ ELVAR+ A+ RR Sbjct: 59 DVCRAIR--QVSDVPVIVVSARGEVDDRILGLHSGADDYIVKPYDIGELVARVHAVCRR- 115 Query: 120 RGHAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 RG G + V+LD V V G + LT KE+Q++ LL+ + T T+ Sbjct: 116 RGTPSGAAAPGGEVAVDGVRVDLDRHIVTVDGAEVSLTRKEFQVLALLAAARGTVCTRSR 175 Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ GR P + +DV + LR KL A + ++TV G GY L Sbjct: 176 IVAEVW-GRSWPGANRTLDVHVATLRTKLGRA----DLVQTVRGVGYRL 219 >gi|225872896|ref|YP_002754353.1| TcrA [Acidobacterium capsulatum ATCC 51196] gi|225793949|gb|ACO34039.1| TcrA [Acidobacterium capsulatum ATCC 51196] Length = 224 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 115/221 (52%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LLIEDD+ +A +E L+ + V VT G DG EFDA +LD+ L + G Sbjct: 1 MNVLLIEDDRRIAQLVERGLREDGHRVSVTHDGADGARRMLSGEFDAALLDILLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R TP+ +L+ + ++ + GADDY+ KPF E L+AR+ AI RR + Sbjct: 61 EVLERVRAQHCKTPILMLTAVDAVPKVLEAFDLGADDYLVKPFLLEILLARVGAIARRVQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ G L+++ + V G +I LT K+ ++E+L R ++E + + Sbjct: 121 PQAPQMLHAGGLTLDRQRRVVARDGRQIALTRKQVDLLEVLMRRSGLVTSREELIEAGWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +DV+I LR KL + + + I T+ G GY Sbjct: 181 SASAVKENTLDVYIHSLRTKLGDRSENRPLIRTIHGTGYTF 221 >gi|229916170|ref|YP_002884816.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467599|gb|ACQ69371.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 238 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 130/227 (57%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + +++ L+ E + + GE+ + L E+D I+LDL + + G E Sbjct: 6 KILVVDDEERIRRLLKMYLEREQYVIEEAVNGEEALALALENEYDVILLDLMMPKMDGVE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR K +TPV +L+ D+V+G + GADDYI KPF+ E+V R++A++RRS Sbjct: 66 VCTELRKTK-ATPVIMLTAKGEEIDRVQGFEVGADDYIVKPFSPREVVLRVKALLRRSGS 124 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ LIV L+++ DA V V G I LT KEY+++ L+ + + ++E Sbjct: 125 TKFMHTSEKSKDLIVFPHLTIDNDAHRVTVDGEEIALTPKEYELLFFLAKQVDKVFSREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219 L +++ +++ +D + +LR+KL+ + + I TVWG GY Sbjct: 185 LLKEVWNYEFFGDLRTVDTHVKRLREKLNRVSPDAAHMITTVWGVGY 231 >gi|104782688|ref|YP_609186.1| DNA-binding response regulator [Pseudomonas entomophila L48] gi|95111675|emb|CAK16396.1| putative DNA-binding response regulator [Pseudomonas entomophila L48] Length = 227 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD +A I L ++ V ++ + +FD +ILDLGL D G Sbjct: 1 MHVLLCEDDDLIASGICAGLSAQGLTVDRVASASQARQMLQAAQFDVMILDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR + PV +L+ ++ D+V GLQ+GADDY+ KPF+ EL AR+ ++RR Sbjct: 61 KLLRRLRQQGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G L + + + G + L+ +E +++ L L+ E + +Y Sbjct: 121 GRAVNVIEHGPLCYDPSSCVATLAGAPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL N +ETV G GY L Sbjct: 181 FSDEVESNALNVHIHHLRRKLGN-----GIVETVRGLGYRL 216 >gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796] Length = 228 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPVTAYSGKEAITKLTTTPDIALMILDVMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L +N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G++ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGY 224 >gi|328949663|ref|YP_004366998.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328449987|gb|AEB10888.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 225 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD +A +EL L F + G G+ + D +ILDLGL D+ G E Sbjct: 5 RILVIEDDPEIARLLELELCEAGFEMIWAPNGMQGLVALRERSPDLVILDLGLPDLEGGE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R + A P+ +L+ ++E KV L GADDY++KPF+ EL+ARI+ +R G Sbjct: 65 IARRAKQAG-EIPIIVLTAADAVERKVELLSGGADDYVTKPFHPAELIARIQVQLRHKEG 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L V+L + V + + L+ KE+ ++ LL+ R ++E HL+ Sbjct: 124 GEVRQVDA--LLVHLGKRQVHFEEREVRLSPKEFDLLALLASRPGKVFSREEIERHLWGK 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E ++DV + LR KL AG Y+ TV G GY LR+ ++ Sbjct: 182 PLEHSSNVVDVHVANLRAKLRE-AGAYGYLRTVRGVGYALRKPSE 225 >gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 243 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L+ E + V G+DG+ + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIAEVLALHLRDERYEVVHCANGDDGLRRLEQGNWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R + TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVEA 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +R A + V G L+++ + V G I LT +E+ ++ + ++ Sbjct: 126 LSRDTRSEAGRVDVGG-LTLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRTDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKL 231 >gi|319406904|emb|CBI80539.1| two-component response regulator [Bartonella sp. 1-1C] Length = 228 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ +E V G+ G L + +D +I+D L G Sbjct: 1 MKILIIEDDRETGRYLEKAFLEAGHTADVAYDGDTGYTLAETVNYDVMIIDRMLPYRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR I TPV ILS + ++D+V GL++G DDY++KPF EL+AR+ + RR Sbjct: 61 SIITELRAKGIKTPVLILSALGQVDDRVTGLRAGGDDYLTKPFAFSELLARVEVLRRRKN 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ A V+ G I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGGKNIILQPREFRLLEYLMRYSGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ K++ + TV G GY+L+ K Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDVPLLHTVRGAGYMLKAPEK 226 >gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041] gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041] Length = 229 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 130/225 (57%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + G++ + +L + + +ILDL + ++ G Sbjct: 1 MKILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS ++ DK++GL SGADDY++KPFN E++AR+++++RR+ Sbjct: 61 MEVIKQIR-KDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +G + ++ G L +N D+ V+ ++G I LT E+ ++ LL+ N + + Sbjct: 120 QGEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224 >gi|207722091|ref|YP_002252529.1| response regulator protein [Ralstonia solanacearum MolK2] gi|206587265|emb|CAQ17849.1| response regulator protein [Ralstonia solanacearum MolK2] Length = 236 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 15/237 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+A+A I L V G E D +ILDLGL I G Sbjct: 1 MRILLIEDDRAIASGIHAGLTQAGHRVLAVHDGVFAAEHLARQSHDLVILDLGLPGIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R TPV IL+ S++DKV GL +GADDY+ KPF ELVAR++A++RR Sbjct: 61 TLLSQYRARDRGTPVLILTARDSLQDKVDGLNTGADDYLLKPFEMLELVARVQALLRRRG 120 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + IV G L ++ + + V + L+ +E+ ++ELL LR+ ++K + Sbjct: 121 DNGEPMPRPDIVVGRLRLSGTERRIFVDAAALELSPREFAVLELLMLRQGRVVSKVQLQD 180 Query: 177 HLYD--------GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 HL G D I+V++ ++R+K+ + I TV G GY+L+ A Sbjct: 181 HLASFGHALGEAGHDVVGDTAIEVYVHRVRRKIEQT---EAEIVTVRGFGYLLQARA 234 >gi|186683302|ref|YP_001866498.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465754|gb|ACC81555.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 241 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 23/243 (9%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDI 57 MRIL++EDD LA E+++++ YV D+ +DG E K E+D ++LD+ L + Sbjct: 1 MRILVVEDDVQLA---EMLMEALTDRQYVVDIAQDGEEAWDCIKVLEYDLVVLDITLPKL 57 Query: 58 PGFEVLRALRVA----------------KISTPVCILSGMSSIEDKVRGLQSGADDYISK 101 G + LR I+ PV +L+ ++ DK+ GL +GADDY+ K Sbjct: 58 DGVSFCQRLRSPMVGRSPSPTSRHTLSRNIAIPVLMLTARDTLGDKITGLDAGADDYMVK 117 Query: 102 PFNKEELVARIRAIVRR-SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160 PF EL+AR+RA++RR S + S G L +N V +HLT KE+ ++EL Sbjct: 118 PFEMPELMARVRALLRRNSAATSSSDFGWGSLRLNSSTYEVTYADQPLHLTPKEFALLEL 177 Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + L++ + ++ D P + + I LR KL + ++IETV G GY Sbjct: 178 MVSSGRRVLSRAGIIERIWSLDDPPSEETVKSHIKSLRYKLKDVGAADDFIETVHGLGYR 237 Query: 221 LRE 223 L++ Sbjct: 238 LKQ 240 >gi|253702308|ref|YP_003023497.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M21] gi|251777158|gb|ACT19739.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 224 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ A+ ++ L F+V + + GEDG+ L + IILD+ L G+ Sbjct: 1 MRILIVEDEQKAANYLKKGLTENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRGGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A PV LS + D+V GL+ GADDY+ KP+ EL+ARIR I+RR Sbjct: 61 SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRCP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL ++L G + LT KE+Q++ L+ R L++ ++ Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLRRHGEVLSRTTISEQVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + ++DV I +LRKK+ + K I+T+ G GYVL E A Sbjct: 181 INFDTDTNVVDVAIRRLRKKVDDPFPVK-LIQTIRGVGYVLDECA 224 >gi|157146166|ref|YP_001453485.1| DNA-binding transcriptional regulator PhoP [Citrobacter koseri ATCC BAA-895] gi|157083371|gb|ABV13049.1| hypothetical protein CKO_01922 [Citrobacter koseri ATCC BAA-895] Length = 224 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 2 MRVLVVEDNALLRHHLKVQLQDLGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S PV +L+ +DKV L +GADDY++KPF+ EE+VAR++A++R Sbjct: 59 DGLSLIRRWRSNDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVVARMQALMR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 119 RNSGLASQVISIPPFQVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QARYPDDVITTVRGQGYLF 221 >gi|78047865|ref|YP_364040.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|121593755|ref|YP_985651.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|78036295|emb|CAJ23986.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|120605835|gb|ABM41575.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 222 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ + I L+ +V +D + F A++LDLGL D G Sbjct: 1 MRVLLVEDDELIGKGIVAGLRKHGISVQHVLTAQDAETVHAEETFHALVLDLGLPDRDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L ++R + PV IL+ +IE +++GL GADDY+ KPF+ EL AR+ A+VRR++ Sbjct: 61 ELLASMRAVEPQLPVLILTARDAIEHRLKGLHDGADDYMVKPFDLRELAARLHALVRRTQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G L + ++ QG + L+ +E ++ L+ + +M LY Sbjct: 121 GRAAQVISAGPLRLEPESGLAWFQGEAVTLSRREVDLLAHLANADGRWVPPDMLNERLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V I +R+KL G IETV G GY L Sbjct: 181 LGEEIGSNALNVHIHNIRRKL-----GAEAIETVRGLGYRL 216 >gi|298247520|ref|ZP_06971325.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550179|gb|EFH84045.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 223 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD + S++ L+ + + + + D G+ + L +D +ILD+ L D+ GF Sbjct: 1 MRILIAEDDLFVGESMKTGLERQRYVIDLVDNGKQALALGGLEPYDLVILDVLLPDMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R LR + P+ L+ + ++ +V GL G DDY++KPF EL AR+RA++RR Sbjct: 61 DICRTLREQGQTMPILFLTALDGVDYRVNGLDIGGDDYLTKPFAFRELEARVRALLRREG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + D++++ V +I+LT KEY ++E L +++ M H+++ Sbjct: 121 PSKTSQLKFLDITLDTINHQVWRGERKINLTRKEYLLLEFLMHNPRQVISRTMIAEHIWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +IDV++ +R+KL G + I T+ G GY L+E Sbjct: 181 SDAENLSNVIDVYVRYVRRKLCE-QGESDVIHTIRGFGYQLKE 222 >gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 130/227 (57%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + +++ L+ E+++V + GE +++ E+D I+LDL + I G E Sbjct: 6 KILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEYDLIVLDLMMPGIDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCEEIRKHK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSS 124 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++V L+++ DA + G I+LT KEY+++ L+ + +E Sbjct: 125 TKFLQTETTTKDVLVFPHLTIDNDAHRITADGKHINLTPKEYELLHYLAQSPDKVFAREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219 L +++ +++ +D I +LR+KL+ + N I TVWG GY Sbjct: 185 LLKDVWNYEFFGDLRTVDTHIKRLREKLNKVSPEAANMISTVWGVGY 231 >gi|258653881|ref|YP_003203037.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557106|gb|ACV80048.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 220 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 123/219 (56%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED + LA +I L++E V V G +G + +D ++LD L ++ G Sbjct: 1 MRVLVVEDAQRLADAIARGLRAEGMAVDVAYDGVEGHQKAMTTRYDVVVLDRDLPEMHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL + A +T V +L+ + +ED+V GL GADDY++KPF ELVARIRA+ RRS Sbjct: 61 DVLTEIVSASDTTRVLMLTASAGVEDRVDGLSLGADDYLTKPFAFPELVARIRALGRRSS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ GDL ++ +TV G + LT KE+ ++E+L + ++ E L ++D Sbjct: 121 PAVKPVLRAGDLELDPAKRTVTRSGRALELTRKEFGVLEVLLAAGGSVVSSEELLERVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P + V + LR+KL G I+TV G GY Sbjct: 181 ENADPFTTTVRVTMMTLRRKL----GDPGIIDTVVGSGY 215 >gi|228955968|ref|ZP_04117903.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803712|gb|EEM50396.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 233 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEIHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R AK P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|229013874|ref|ZP_04171002.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048] gi|228747543|gb|EEL97418.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048] Length = 229 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTMKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 236 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V G + ++ + ++ D +LD+ L D+ GF Sbjct: 9 RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A PV L+ EDK+ GL G DDY++KPF+ +E+VARIRA++RR+ Sbjct: 69 VTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTAS 128 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ DL ++ DA V G + L+ E++++ L + N L+K L+H+ Sbjct: 129 LDDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHV 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + I++ +I LR+K+ + G + I T G GY+LR K Sbjct: 189 WEYDFNGDASIVESYISYLRRKI-DVGGHEKMIHTKRGVGYMLRTADK 235 >gi|149917429|ref|ZP_01905927.1| DNA-binding response regulator KdpE [Plesiocystis pacifica SIR-1] gi|149821766|gb|EDM81162.1| DNA-binding response regulator KdpE [Plesiocystis pacifica SIR-1] Length = 235 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ ED+ + +++S ++ + G + + L + D +ILDLGL D G E+ Sbjct: 9 ILVAEDEPQMRRFFRALIRSHDYRLLEAGTGREALALASSHRPDLLILDLGLPDRDGLEL 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L LR A S P+ ++S S DKVR L GADDY++KPF EL+AR+R +R++ Sbjct: 69 LVELR-AWTSMPIIVVSARGSELDKVRALDLGADDYLTKPFGSHELLARVRVALRQAARV 127 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G Q L G+LSV+L + VE+ G + LT EY+++ + LT L+ + Sbjct: 128 GAGSEQPLFEVGELSVDLARRKVELGGQAVRLTPTEYKLLSTMIAHAGKVLTHRQLLSEV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + V++ +LR+KL + ++T G GY L Sbjct: 188 WGPAQASNTQYLRVYMAQLRRKLEADPARPSLLKTEIGVGYRL 230 >gi|219667295|ref|YP_002457730.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537555|gb|ACL19294.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 234 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 129/229 (56%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD + + L+ E + V + + G +EL + D ++LD+ L ++ G Sbjct: 2 VKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGL 61 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 +V + +R + + P+ +LS + D+V GL+ GADDYI+KPF+ EL+ARI+A +R Sbjct: 62 DVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLRE 121 Query: 119 SRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R ++ ++ GDL + ++ V ++G ++ LTGKE++++ + R N ++E L Sbjct: 122 ERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + +DV I LR KL + + IE+V G GY L N Sbjct: 182 QKVWGYTVSGDTRTVDVHISNLRSKLKSVSP---IIESVRGVGYRLAVN 227 >gi|303234315|ref|ZP_07320955.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia magna BVS033A4] gi|302494568|gb|EFL54334.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia magna BVS033A4] Length = 220 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 116/217 (53%), Gaps = 4/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + IE LK F+VY ++ + L +FD +I D+ + D+ GFE+ Sbjct: 5 ILVVDDDEQIRSVIETSLKRAQFSVYTCASAKETLSL-SLDQFDLMIFDVMMPDMDGFEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K+ P+ L+ S+ D GL G DDYI KPF ELV+R++A +RR Sbjct: 64 CRNVR-EKVDCPILFLTAKSTEADVAEGLAIGGDDYIRKPFTPLELVSRVKAHLRREERV 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 S + GD+ L+AK ++++G I T EY++ ELL+ K ++E L + Sbjct: 123 HHSYLSFGDIRFLLNAKEIQIKGETIKFTKMEYEICELLARHKGQVFSREHILEQVGGFW 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E E I I +RKK S + I+T+WG GY Sbjct: 183 TESESAAIVEHIKNIRKKFSTYQ--LDPIKTIWGVGY 217 >gi|297545597|ref|YP_003677899.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843372|gb|ADH61888.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 231 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 126/221 (57%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + I+ L+ E + Y GE+ +++ K D IILD+ L + GF Sbjct: 4 RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LR + ++ P+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VLRTLRQS-MTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +++ +L +++ VE + LT +E+++++ L L K ++EM L + Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKDNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++ +DV I +LR+K+ + I T G GY Sbjct: 183 WGYEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGY 223 >gi|326797945|ref|YP_004315764.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326548709|gb|ADZ77094.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 224 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLG---EDGIELCKFYEFDAIILDLGLTDI 57 M++L++ED+K LA+ + LK Y+ DL ++G E ++D I++DLGL D Sbjct: 1 MKVLIVEDEKTLAYEMADFLKKA---FYICDLAHTYQEGAEKIALNQYDFILIDLGLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++LR + IL+ +++D++ GL GADDY+SKPF EL +R++AI R Sbjct: 58 DGLDILRKAKKHNEEAAYIILTARGNLDDRIIGLDLGADDYLSKPFYLLELQSRMQAIAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R LI GD V+L + + + I L+ KE+ ++ L L KN LT+ H Sbjct: 118 RKFKLQDELIPVGDFRVDLPKRLILFNDNPIDLSRKEFDLLSYLLLHKNRVLTRMQLSEH 177 Query: 178 LYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ D+ + ID I +RKKL A + ++ETV G GY +R Sbjct: 178 IWGSYAVDDNDSNYIDAHIKNIRKKLGQCASIE-WLETVRGVGYRIR 223 >gi|153853514|ref|ZP_01994894.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814] gi|149753669|gb|EDM63600.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814] Length = 229 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A L+ F V V + G+ G++ ++D +ILDL L GF+ Sbjct: 3 KILIVEDEEAIADLERDYLELSGFTVEVANDGDIGLQKALNEDYDLLILDLMLPGTDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICRQVRDVK-NTPIVMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V V G T KE+ ++ L+ N +KE Sbjct: 122 LTGSAAEKNKVIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYSKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D ++ + V I K+R+K+ YIET+WG GY Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGY 225 >gi|16129093|ref|NP_415648.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli str. K-12 substr. MG1655] gi|89107976|ref|AP_001756.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli str. K-12 substr. W3110] gi|157160654|ref|YP_001457972.1| DNA-binding transcriptional regulator PhoP [Escherichia coli HS] gi|170020477|ref|YP_001725431.1| DNA-binding transcriptional regulator PhoP [Escherichia coli ATCC 8739] gi|170080781|ref|YP_001730101.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli str. K-12 substr. DH10B] gi|188494074|ref|ZP_03001344.1| DNA-binding response regulator PhoP [Escherichia coli 53638] gi|238900384|ref|YP_002926180.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli BW2952] gi|256023172|ref|ZP_05437037.1| DNA-binding transcriptional regulator PhoP [Escherichia sp. 4_1_40B] gi|300906951|ref|ZP_07124623.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300917903|ref|ZP_07134536.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300949478|ref|ZP_07163476.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300955536|ref|ZP_07167898.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|301029561|ref|ZP_07192639.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301306074|ref|ZP_07212152.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301644548|ref|ZP_07244541.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|307137765|ref|ZP_07497121.1| DNA-binding transcriptional regulator PhoP [Escherichia coli H736] gi|312971266|ref|ZP_07785444.1| transcriptional regulatory protein phoP [Escherichia coli 1827-70] gi|331641674|ref|ZP_08342809.1| transcriptional regulatory protein PhoP [Escherichia coli H736] gi|130126|sp|P23836|PHOP_ECOLI RecName: Full=Transcriptional regulatory protein phoP gi|147254|gb|AAA24377.1| phoP [Escherichia coli] gi|216608|dbj|BAA14390.1| PhoP protein [Escherichia coli K-12] gi|1651558|dbj|BAA35952.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli str. K12 substr. W3110] gi|1787375|gb|AAC74214.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli str. K-12 substr. MG1655] gi|157066334|gb|ABV05589.1| DNA-binding response regulator PhoP [Escherichia coli HS] gi|169755405|gb|ACA78104.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169888616|gb|ACB02323.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli str. K-12 substr. DH10B] gi|188489273|gb|EDU64376.1| DNA-binding response regulator PhoP [Escherichia coli 53638] gi|238860868|gb|ACR62866.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli BW2952] gi|260449731|gb|ACX40153.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|299877556|gb|EFI85767.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300317575|gb|EFJ67359.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300401298|gb|EFJ84836.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300414893|gb|EFJ98203.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300451114|gb|EFK14734.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300838646|gb|EFK66406.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301077130|gb|EFK91936.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|309701454|emb|CBJ00758.1| two-component response regulator [Escherichia coli ETEC H10407] gi|310336468|gb|EFQ01654.1| transcriptional regulatory protein phoP [Escherichia coli 1827-70] gi|315135762|dbj|BAJ42921.1| DNA-binding transcriptional regulator PhoP [Escherichia coli DH1] gi|315252615|gb|EFU32583.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|315616012|gb|EFU96638.1| transcriptional regulatory protein phoP [Escherichia coli 3431] gi|323937870|gb|EGB34134.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323942600|gb|EGB38767.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|331038472|gb|EGI10692.1| transcriptional regulatory protein PhoP [Escherichia coli H736] Length = 223 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ ++ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHIPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S P+ +L+ S +DKV L +GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 >gi|300867327|ref|ZP_07111985.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] gi|300334681|emb|CBN57151.1| Response regulator receiver domain protein [Oscillatoria sp. PCC 6506] Length = 227 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 121/222 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD L S+ L ++ + V GE + + + +D I+ D+ L + G Sbjct: 1 MRILLVEDDSQLIASLTEALVAQRYIVDSARDGESAWDKTQGFVYDLILTDVTLPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR +P+ +L+ + DKV GL +GAD Y+ KPF +EL+A+IRA++RR + Sbjct: 61 GLCERLRDRGYLSPILMLTARDTSLDKVIGLDAGADVYMVKPFQLQELLAQIRALLRRGQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +G+LS++ + V + IHLT KE+ ++E L L++ + ++ Sbjct: 121 SGMSPILRSGNLSLDPASYEVIYERSPIHLTPKEFALLEALLRYGKRVLSRSAIIEQVWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ PE I +I LR KL A K+ IETV G GY L+ Sbjct: 181 WQESPEEDTIKTYIKNLRAKLKAAGAPKDLIETVHGVGYRLK 222 >gi|229163664|ref|ZP_04291612.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803] gi|228619801|gb|EEK76679.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803] Length = 229 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 234 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++G Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ +V GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 122 AVEASGVVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ Y+ TV G GY Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPRYLTTVRGLGY 227 >gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1] gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1] Length = 236 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 131/229 (57%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ LK E + V+ G++ +++ + + D ++LD+ L + G E Sbjct: 4 KILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAEEIKPDLVLLDIMLPNRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREIR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQH 122 Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++ I G L ++ DA V +G I LT +E++++ L+ +T+E Sbjct: 123 GAAQQAAEGAKNEIAVGSLVIHPDAYIVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLR 231 >gi|148263402|ref|YP_001230108.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396902|gb|ABQ25535.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 243 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 116/233 (49%), Gaps = 4/233 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ LA I L+ EN+ V + GED +E ++ FD IILD+ L I GF V Sbjct: 8 ILLVEDEIHLARGICFNLELENYRVSHVETGEDALERVRYERFDLIILDVMLPGIDGFAV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R PV +L+ S D++ GL GADDY++KPFN E + R+ ++RRS + Sbjct: 68 CREIRQLDARVPVLMLTARSDERDRIAGLTGGADDYLTKPFNLNEFLLRVGGMLRRSAWY 127 Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + GD V L + + I LT E +M+ L ++ + ++ L + Sbjct: 128 RPEPVEEGYRFGDNDVFLLSYRAKTPQGEIDLTDLEVKMLSLFFQKEGEAIPRKTLLESV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 + + E + +D FI +LRK Y +TV G GY A+ + E Sbjct: 188 WGYSSDAETRTLDNFIVRLRKYFEPDPAKPVYFQTVRGVGYRFSREARGQRNE 240 >gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435] gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus haemolyticus JCSC1435] Length = 241 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 129/238 (54%), Gaps = 10/238 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L LK E+F ++ G++ L ++ I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 65 ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSS 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 KPEQSEPHARDVIEFNHLIIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETCE 231 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + DE + Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFEVKSNDEPTK 241 >gi|329906568|ref|ZP_08274423.1| response regulator transcription regulatory protein [Oxalobacteraceae bacterium IMCC9480] gi|327547258|gb|EGF32107.1| response regulator transcription regulatory protein [Oxalobacteraceae bacterium IMCC9480] Length = 222 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 127/227 (55%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 M +LL EDD LA I L+S V V D G +EL K E ++LD+GL I G Sbjct: 1 MHVLLAEDDSVLADGIARALRSHGMVVDVVDNGS-AVELAIKHAEIAVLVLDIGLPGIDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 FEV+R LR+ + PV +L+ +I+D+V G + GADDY+ KPF+ ELVAR++A+VRRS Sbjct: 60 FEVVRRLRLHGMQVPVLLLTARDAIQDRVHGFELGADDYLVKPFSTLELVARLKALVRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L + G L+++ A+ + I + +E+ ++E L + + ++K+ ++ + Sbjct: 120 APKPIELSI-GGLTLDTFARRAHIGTRSIEFSVREWAVLEYLMQQASRVVSKQQIIDAIL 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + ++V++ ++R K+ A I T+ G GY+L A Sbjct: 179 PWGEDLTLNAVEVYVSRIRLKI---APSNIVIRTIRGFGYLLEPVAP 222 >gi|161503675|ref|YP_001570787.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865022|gb|ABX21645.1| hypothetical protein SARI_01759 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|219523852|gb|ACL14889.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Arizona] Length = 224 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 2 MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIIDLGLPDE 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + + PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 59 DGLSLIRRWRSSDVLLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 221 >gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 233 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYDEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I D+ + DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQEVNDASNEITIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299] gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115] gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300] gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224] gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948] gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937] gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299] gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115] gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300] gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224] gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948] gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937] gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] Length = 247 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +++ L+ E+F ++ G++ EL + I+LDL L ++ G +V Sbjct: 11 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 71 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 129 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V ++LT KEY+++ L+ N +E Sbjct: 130 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 189 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + DE Sbjct: 190 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 246 >gi|16130921|ref|NP_417497.1| quorum sensing DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. MG1655] gi|89109795|ref|AP_003575.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. W3110] gi|170082568|ref|YP_001731888.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. DH10B] gi|238902138|ref|YP_002927934.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli BW2952] gi|1723888|sp|P52076|QSEB_ECOLI RecName: Full=Transcriptional regulatory protein qseB gi|882555|gb|AAA69193.1| ORF_o219 [Escherichia coli str. K-12 substr. MG1655] gi|1789402|gb|AAC76061.1| quorum sensing DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. MG1655] gi|85675828|dbj|BAE77081.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K12 substr. W3110] gi|169890403|gb|ACB04110.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. DH10B] gi|238860870|gb|ACR62868.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli BW2952] gi|260447939|gb|ACX38361.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|315137618|dbj|BAJ44777.1| DNA-binding transcriptional regulator QseB [Escherichia coli DH1] Length = 219 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L++++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|260772762|ref|ZP_05881678.1| two component response regulator [Vibrio metschnikovii CIP 69.14] gi|260611901|gb|EEX37104.1| two component response regulator [Vibrio metschnikovii CIP 69.14] Length = 225 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K ++ L F V + G DG+ L E+D +ILD+ L + G+ Sbjct: 1 MKILIVEDEKKTGDYLQQGLSEAGFVVDLVRDGIDGLHLALTGEYDLLILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R A+ PV L+ ++ED+V GL+ GADDY+ KPF EL+AR+R + RR + Sbjct: 61 GVLKTIRRAEYHMPVLFLTARDAVEDRVHGLELGADDYLIKPFAFSELLARVRTLSRRGK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL+++L + V G RI LT KE+ ++ELL R+ L++ + ++D Sbjct: 121 TQKIDHLQAADLALDLVKRRVIRNGQRIDLTAKEFILLELLLRRRGEVLSRSFIASQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +I+V + +LR K+ + K I TV G GYVL Sbjct: 181 MNFDSDTNVIEVAVRRLRAKVDDPFEPK-LIRTVRGMGYVL 220 >gi|261819497|ref|YP_003257603.1| DCpxR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261603510|gb|ACX85996.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] Length = 232 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 126/234 (53%), Gaps = 22/234 (9%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DDK L ++ +L+ E FNV V GE +++ D ++LD+ + G + Sbjct: 3 KILLVDDDKELTALLKELLEMEGFNVVVAYDGEQALQIVD-NTIDLLLLDVMMPKKNGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRKNT 167 Q GD S A T+EV G R++ LTG E+ ++ LL+ R Sbjct: 121 TDQQ--QAGDNS----APTLEVDGLRLNPGRQEASFDDVVLDLTGTEFTLLYLLAQRLGQ 174 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++E + R P + ID+ I LR+KL + +T+ GRGY++ Sbjct: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDSLPWFKTLRGRGYLM 228 >gi|256824367|ref|YP_003148327.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687760|gb|ACV05562.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 222 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K LA + L+ + V +T G ++ + +E D ++LDLGL + G EV Sbjct: 1 MLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGMDGIEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R A V +L+ ++ GL GADDYI+KPF+ ELVAR+ A++RR R Sbjct: 61 CRRVR-AFSECYVLMLTARGDERHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTT 119 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + V GDL ++L A V G + LT E+ ++ LS R + ++ ++ ++ Sbjct: 120 VSAPEPERVCGDLVIDLAAHGARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + +++DV I LR+KL A YI+TV G GY + E Sbjct: 180 DPAWVGDERLVDVHIKNLRRKLD--ADPARYIDTVRGVGYRMAEQ 222 >gi|313637948|gb|EFS03257.1| response regulator ArlR [Listeria seeligeri FSL S4-171] Length = 221 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 129/219 (58%), Gaps = 6/219 (2%) Query: 8 DDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALR 67 D+K LA IEL L+ EN+ V + G G+EL E+DAI+LDL L + G EV R +R Sbjct: 4 DEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNGVEVCRRVR 63 Query: 68 VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLI 127 K TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+R+++RR QS Sbjct: 64 QVK-QTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVENAEQSAK 122 Query: 128 VTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 T +L V + + V+ I LT +EY+++ L N LT+E+ LN ++ Sbjct: 123 QTTLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLLNKVWGYET 182 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++DV++ LR K+ + ++YI+TV G GYV+R Sbjct: 183 EVETNVVDVYVRYLRNKIDH-PDEESYIQTVRGTGYVMR 220 >gi|294787493|ref|ZP_06752746.1| DNA-binding response regulator PhoP [Parascardovia denticolens F0305] gi|315226931|ref|ZP_07868719.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] gi|294484849|gb|EFG32484.1| DNA-binding response regulator PhoP [Parascardovia denticolens F0305] gi|315121063|gb|EFT84195.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] Length = 245 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + I++ + D I+LD+ L DI GF V Sbjct: 12 IVVVDDEPSIRELVSASLHFSGFEVKTAASGTEAIDVITKTDPDLIVLDVMLPDIDGFTV 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 72 TRRIRQQGIEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 131 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL +N D+ V G + L+ EY+++ L + L+K L+H++ Sbjct: 132 VEDDPIIRVADLEINEDSHDVTRHGQLVELSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 191 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLRE 223 + I++ +I LRKK+ G + I+T G GY++RE Sbjct: 192 YDWGGDAAIVESYISYLRKKIDGITYRDEDGTEHKVTPIIQTKRGIGYIIRE 243 >gi|223984939|ref|ZP_03635042.1| hypothetical protein HOLDEFILI_02344 [Holdemania filiformis DSM 12042] gi|223963108|gb|EEF67517.1| hypothetical protein HOLDEFILI_02344 [Holdemania filiformis DSM 12042] Length = 222 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 121/220 (55%), Gaps = 7/220 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ EDDK + + L+S N+ G D + + FD ++LDL L + G E Sbjct: 3 RILIAEDDKEICQILTDFLESYNYKTVCCFSGTDVLSVFNQESFDLVVLDLMLPYVSGEE 62 Query: 62 VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI-RAIVRRS 119 +L +R K S P+ I+S + KV L+ GADDY++KPFN EEL+ARI R ++R Sbjct: 63 ILCKIR--KFSDIPIIIVSAKDLVLTKVELLRLGADDYVTKPFNLEELLARIERCLIRNQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + IV+GDL ++ +K+V + + LT KEYQ++ELL N +K+ ++ Sbjct: 121 KTLPEMQIVSGDLVLDTQSKSVSIHDTILSLTAKEYQILELLMKYPNKVFSKQNLYEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +++ I LRKKL + IET+WG GY Sbjct: 181 NEAFARDNDVMNTHISNLRKKLGDEGWR---IETIWGLGY 217 >gi|206889389|ref|YP_002248264.1| cell cycle transcriptional regulator CtrA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741327|gb|ACI20384.1| cell cycle transcriptional regulator CtrA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 214 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 129/222 (58%), Gaps = 10/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIEDD+ L +++ LK E V++ D + + K YEFD I++DL L G Sbjct: 1 MRILLIEDDRILGETLKDYLKIEAIETVWLYDERQLP-KTIKKYEFDVIVIDLILKFTSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E++ ALR A I TP+ + + SI+DK GADDY++KPF +E V R++A+ RR Sbjct: 60 EEIIAALRKAGIETPILVTTAKKSIDDKETCFLRGADDYLTKPFEFKEFVLRLKALSRRK 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H ++I G+L VNLDAKT+ + I L+ K +++ LL ++ + E LN+++ Sbjct: 120 --HIGNIINLGELIVNLDAKTIHKGNNEIKLSKKAWEVFILLLKKRGEIVDTETILNYIW 177 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + +I+ +I +LRK L + + I T GRGY L Sbjct: 178 PDKDVGD-EIVRAYIKELRKVLPSDS-----IITYPGRGYKL 213 >gi|188585544|ref|YP_001917089.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350231|gb|ACB84501.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 234 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED++ L ++ L+ E + VY + G G+EL K D ++LDL L ++ G E+ Sbjct: 10 VLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEEI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R + TP+ +L+ S ++K+ GL GADDY+ KP + E++AR++ I+RR Sbjct: 70 ARKIRKEQ-ETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKE 128 Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G Q I+T G+++++ AK + ++G I LT E+ ++ L+L ++E + + Sbjct: 129 PGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLADRI 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 Y E + + ID I LR+K+ +I+TV+G GY Sbjct: 189 YGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGY 229 >gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781] gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763] gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719] gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781] gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763] gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719] gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] Length = 244 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +++ L+ E+F ++ G++ EL + I+LDL L ++ G +V Sbjct: 8 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 68 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 126 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V ++LT KEY+++ L+ N +E Sbjct: 127 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + DE Sbjct: 187 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 243 >gi|227510397|ref|ZP_03940446.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190049|gb|EEI70116.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 242 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 129/233 (55%), Gaps = 16/233 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTDI 57 ILL+ED++ L+ + L+ EN+ + L DG + YE + IILD L + Sbjct: 16 ILLVEDEEGLSSYLTTELQFENYTII---LATDGKQALDTYESMRGQLNLIILDWMLPKL 72 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVLR +R P+ +++ + DKV GL +GADDYI+KPF EEL+ARIR ++R Sbjct: 73 DGLEVLRRIR-QNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLR 131 Query: 118 RSRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT--TLTKEM 173 S+ A S L DL++N ++ V I LT +EY++ LL+L KN T+T++ Sbjct: 132 HSQNQATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYEL--LLTLIKNAGETMTRDE 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 LN ++ E + ++DV+I LR K+ K I TV G GYVL N + Sbjct: 190 LLNLVWGVDFEGQPNVVDVYIRYLRNKVDRNF-KKTLIHTVRGVGYVLSANYQ 241 >gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 226 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + +L E F V V D G D I D ++LDL L G E Sbjct: 3 RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +L+ S DKV GL+ GADDY++KP++ ELVAR+RA++RR +G Sbjct: 63 VCRQLR-QRSTVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR-QG 120 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + LI + G + ++++ V V G ++ L KE++++E+L LT+ ++ Sbjct: 121 EPEELISSTVQAGPVRMDIERHVVSVDGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ ++ TV G GY Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRGKIEPDPSAPRFLVTVRGLGY 222 >gi|283766070|gb|ADB28435.1| two-component regulator protein PhoP [Edwardsiella tarda] Length = 224 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L H + + ++ V + ++ + D I+DLGL G Sbjct: 1 MRILVVEDNNLLRHHLSVQMRELGHQVDAAENAKEADFFVREQSPDIAIVDLGLPGEDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R R +I+ P+ +L+ S ++KV L++GADDY++KPF+ EE++AR++A++RR+ Sbjct: 61 SMIRRWRSEQITLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I +L + + V I LT EY +IE L ++K+ + LY Sbjct: 121 GLASQIISMPPFQADLSRRELRVNETLIKLTAFEYTIIETLIRNSGKVVSKDALMLQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E IDV + +LRKKL N + I TV G+GY Sbjct: 181 DAELRESHTIDVLMGRLRKKLQNEYPA-DVITTVRGQGY 218 >gi|269124222|ref|YP_003306799.1| two component transcriptional regulator, winged helix family [Streptobacillus moniliformis DSM 12112] gi|268315548|gb|ACZ01922.1| two component transcriptional regulator, winged helix family [Streptobacillus moniliformis DSM 12112] Length = 225 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 129/224 (57%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED+ L + I+ LK+ + V GE+ + +D +ILD+ L + GF Sbjct: 1 MKILLVEDEIDLNNIIKKYLKTSGYIVDSVFDGEEALFNLNEASYDLVILDVMLPKLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R V +L+ +EDK++GL GADDY+SKPF+ EEL ARIRAI+RR Sbjct: 61 EVLEKMRKKNNKAAVLMLTSKDQVEDKIKGLDLGADDYLSKPFDFEELAARIRAIIRRRY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S I DL ++ KTV I LTGKEY+++E L K ++++ +H+YD Sbjct: 121 DNLSSEIKIHDLILDTMKKTVIRNNVNIDLTGKEYEILEYLMQNKERIVSRDQIKDHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +IDV I +RKK+ + G K I T G GYV++EN Sbjct: 181 FYYEGSSNVIDVLIKNIRKKI-DLEGSKQIIFTKKGLGYVVKEN 223 >gi|156742564|ref|YP_001432693.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|219850344|ref|YP_002464777.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|156233892|gb|ABU58675.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] gi|219544603|gb|ACL26341.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 232 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 130/229 (56%), Gaps = 2/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++A+A I+ L+ + + V V G + ++ FD +ILDL L I G Sbjct: 1 MRVLIVEDERAIAGYIKRGLEEQGYAVDVAYDGREALDWLDAAPFDLVILDLMLPQIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR PV +L+ SI+D+VRGL SGADDY+ KPF +EL+AR+RA+ RRS Sbjct: 61 TVCRELRARGFRMPVLMLTARDSIDDRVRGLDSGADDYLVKPFAIQELLARLRALARRST 120 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ ++ DL ++ + V G I LT KEY ++E L LT+ M H++ Sbjct: 121 DAPKTPVLHIADLMLDTATRRVSRGGKYIELTAKEYAILECLMRASGRLLTRTMIAEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + +IDV+I LR+K+ + K I+TV G GY L A+ E Sbjct: 181 NYDTFNQSNVIDVYIRNLRRKIDDPFPVK-LIQTVRGAGYRLWYEAEHE 228 >gi|33594239|ref|NP_881883.1| two component response regulator [Bordetella pertussis Tohama I] gi|33564314|emb|CAE43615.1| two component response regulator [Bordetella pertussis Tohama I] gi|332383653|gb|AEE68500.1| two component response regulator [Bordetella pertussis CS] Length = 228 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ +A + L F L E+DA+++DL L D G Sbjct: 1 MRILLVEDERDMAAWLMRALAQSGFTPDHAPDARTAEGLMVGNEYDAVVMDLRLPDKHGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR +R TPV +L+ +++D+VRGL GADD+++KPF EEL AR+ A+VRRSR Sbjct: 61 VLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G LS + +++ + G + LT +E+ + L R + K ++ Sbjct: 121 GRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAALLTRSGYPVDKSQLFGKVFT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E I+V + +LRKKL+ G I TV G GY+L Sbjct: 181 HESEANPDAIEVVLHRLRKKLT---GSDVRIVTVRGLGYML 218 >gi|295106491|emb|CBL04034.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 226 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 132/226 (58%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+A++ +I L S D GE+G+ + +D ++LD+ L + G+ Sbjct: 1 MKILIIEDDRAISRAIAAALGSRYAFDQAFD-GEEGLFFAQQNVYDLVVLDIMLPALDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + TPV +L+ ++ +D+VRGLQ GADDY++KPF+++ELV R+ AI+RRS Sbjct: 60 GVLERLRADGMDTPVLMLTAKNARDDRVRGLQLGADDYLAKPFDRDELVLRVEAIIRRSM 119 Query: 121 GHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++L G + LD T V G + L GK+Y ++E L + ++K + + Sbjct: 120 G-VRTLDAFGFRGLTLDPNTRRAAVDGAPVVLKGKQYDVLEYLVSHEGQLVSKTQLFDRV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ +++V++ LRK L G +++T+ G GYV ++ Sbjct: 179 WGFMNDTSSNVVEVYVSALRKVL-KGHGYDRFLKTIRGAGYVWTDD 223 >gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24] gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24] gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 237 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L ++ +ILDL + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S AQ +L G L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNNTAQEKTTLSFKG-LTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKT 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 182 QLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228 >gi|77464845|ref|YP_354349.1| two component transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77389263|gb|ABA80448.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides 2.4.1] Length = 228 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L++E V +GI+ +ILDLGL D G E Sbjct: 6 RILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGIDRAALDAPTLVILDLGLPDGDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120 VLR +R PV +LS S KV L +GA DY++KPF E +ARIRA++R RS Sbjct: 66 VLRTVR-GWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S+I +L ++L A+ V V G + LT +E+ ++ LL+ + +T+ M L ++ Sbjct: 125 PAAPSVISVAELEIDLAARRVSVSGTEVKLTRREFDLLRLLASQAGRLVTQAMILRTIWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + + + V+I +LR KL + A +I T G GY R Sbjct: 185 PAHEEDSQYLRVYIRQLRAKLGDDAADPRWIFTEPGIGYRFR 226 >gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 250 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54 RIL++ED++ + + L L+ E + + G +E K E FD ++LDL L Sbjct: 20 RILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR + P+ +LS S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PQINGLDICRLLRHQGNAVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR R LI ++S+N V V+G ++L+ KE++++EL ++ Sbjct: 140 LLRRQRLSNLPLIPVLKYKEISLNPQECRVLVRGKEVNLSPKEFRLLELFMSYARRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGY 247 >gi|297154811|gb|ADI04523.1| CheY-like receiver domain-containing response regulator [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++DD L ++ L++E F V DG+ +D IILD+ + + G+ Sbjct: 1 MRVLVMDDDTRLVELLQQGLRAEGFAVDAASDSLDGLAKAAADNYDVIILDVMMPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR +TP+ +L+ D+ GL++GADDY++KPF+ L AR+ A++RR+R Sbjct: 61 KVCAHLRSIGDNTPILMLTAKDGEYDEAEGLETGADDYLTKPFSFVVLTARLHALIRRAR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + GDL ++ + G I LT +E+ ++ LL+ + ++K L+ ++D Sbjct: 121 PERQVVQHFGDLEIDTGGRRCRRAGTDIALTPREFDVLALLTATPDIAISKAAILDRVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I++V + LR+K+ G+ IETV G Y LR + Sbjct: 181 SAYEGGPNIVEVHVSALRRKIDRPF-GRASIETVPGGAYRLRSDG 224 >gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 237 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE ++L + +ILDL + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122 Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + Q + + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGY 228 >gi|17229456|ref|NP_486004.1| two-component system response regulator [Nostoc sp. PCC 7120] gi|17131054|dbj|BAB73663.1| two-component system response regulator [Nostoc sp. PCC 7120] Length = 236 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 9/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+ L + +L E + V G+ G E+ +D +ILD L G Sbjct: 7 MRILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLPGKTGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR TPV L+ +++D+V+GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 67 EICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSS 126 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + DL ++ + + QG I L+ KE Q+++ LT L Sbjct: 127 SQTYEATPGRLTVADLELDCENQVAYRQGRVIELSQKESQLLQYFMEHTGQLLTHAQILQ 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN--YIETVWGRGY 219 HL++ + P +I I LR+K+ GK I TV+G+GY Sbjct: 187 HLWEDNEPPNSNVIAALIRLLRRKIEV---GKELPLIHTVYGKGY 228 >gi|290475966|ref|YP_003468861.1| response regulator in two-component regulatory system with QseC, regulates flagella and motility by quorum sensing (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289175294|emb|CBJ82097.1| response regulator in two-component regulatory system with QseC, regulates flagella and motility by quorum sensing (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 221 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 10/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED L+H ++ L S F V D+ EDGI +L ++ +ILD+ L + Sbjct: 1 MRLLLVEDHPDLSHWLQKALSSSGFAV---DIAEDGIAADQLLLTEDYTLLILDVALPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L LR + PV +L+ + D+V+GL SGADDY++KPF+ EEL ARIRA++R Sbjct: 58 DGISLLSRLRKRGQNLPVLLLTAKVDVADRVKGLNSGADDYVTKPFDFEELEARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G + G L V DA + + LT +E+ ++ L R+ ++K+ Sbjct: 118 RGMGLPLGIQQFGSL-VYEDAGYFLLDNQPLALTPREFSVLTTLFHRRGRPVSKQQLFEQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ DE + I++++ +LRKKL N+ G I T+ G GY L Sbjct: 177 VFSLSDEANPQSIELYVHRLRKKLFNSDVG---ICTLRGLGYRL 217 >gi|163856324|ref|YP_001630622.1| transcriptional regulatory protein [Bordetella petrii DSM 12804] gi|163260052|emb|CAP42353.1| Transcriptional regulatory protein [Bordetella petrii] Length = 225 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 12/227 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M ILL+EDD L +++ L + + D E + L + A++LD+GL Sbjct: 1 MHILLVEDDAMLGMAMQAGLAQKLGATVDWARDAAEARLALAGS-PYAAVLLDIGLPGES 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G VLRALR +TPV +++ + +++ GL +GADDYI KPF +EL+AR+RA++RR Sbjct: 60 GLSVLRALRARYDATPVLLVTARDQLSERIGGLDAGADDYIVKPFQLDELLARLRAVLRR 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL--RKNTTLTKEMFLN 176 SR L+ V LD T +V+ + +T +++ + LL+L R +LT+E + Sbjct: 120 SRNRVTPLLACA--GVTLDPATRQVRRDGVEVTLSQHEYLTLLALMERPGRSLTREQLED 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +Y G E I V++ +LR+KL G + + TV G GY L E Sbjct: 178 AVYGGHGTIESNTIAVYVHQLRRKL-----GDHIVATVHGYGYRLGE 219 >gi|323359459|ref|YP_004225855.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275830|dbj|BAJ75975.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 218 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 117/218 (53%), Gaps = 5/218 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED++ +A + L++ + D G D ++ E D ++LD+GL I GFE Sbjct: 3 RILIAEDEERIAAFVAKGLEAAGYQTVTVDDGADALDTALSGEVDLVLLDVGLPTIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV +L+ +S D V GL +GA+DY++KPF +EL+AR+R+ +R Sbjct: 63 VLRTLRGQGSALPVIMLTARTSTRDTVDGLDAGANDYMAKPFKFDELLARVRSRLREPVT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I GD+++++ + + G + L+ +E+ + E L++E L+ ++ Sbjct: 123 ANTISISHGDVTLDVRGRRASIDGREVDLSAREFALAEEFLRHAGQVLSREQLLSRVWGM 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P ++DV++ LR K G I TV G GY Sbjct: 183 DFDPGSNVVDVYVRYLRGKF-----GAARIATVRGAGY 215 >gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 243 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A + L L+ E + V G +G+ + +DA++LDL L I G E Sbjct: 6 RVLIVEDDAHIAELLRLHLRDEGYAVEYAADGNEGMRRLEEGGWDALVLDLMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + R TP+ I S SS ++ GL+ GADDY++KPF+ ELVAR+RA++RR+ Sbjct: 66 ICKRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRTEA 125 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R A SL G ++++ A+T V R+ LT +E+ ++ + + ++ Sbjct: 126 LERNARIDAGSLRQHG-VAIDPIARTASVDERRLELTPREFDLLHFFARNPDKVFSRLDL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LN ++ + E ++ I +LR K+ I TVWGRGY Sbjct: 185 LNQVWGYQHEGYEHTVNTHINRLRTKIEADPSNPQRILTVWGRGY 229 >gi|170722714|ref|YP_001750402.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760717|gb|ACA74033.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 227 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD +A I L ++ V + + +FD +ILDLGL D G Sbjct: 1 MHVLLCEDDDLIASGICAGLTAQGLTVDRVANAGAARAMLQAAQFDVMILDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR I PV +L+ ++ D+V GLQ+GADDY+ KPF+ EL AR+ ++RR Sbjct: 61 KLLRRLRQQGIDLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G L + + + G + L+ +E +++ L L+ E + +Y Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL N + +ETV G GY L Sbjct: 181 FSDEVESNALNVHIHHLRRKLGN-----SIVETVRGLGYRL 216 >gi|312126506|ref|YP_003991380.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776525|gb|ADQ06011.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 221 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 8/222 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED + L I LK+E FNV + +D +E K + D +ILD+ L D+ G+EV Sbjct: 4 ILVVEDQQDLNQIITRFLKNEGFNVINSYTAKDALE--KLNDTDLVILDIMLPDMEGYEV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +K P IL+ S DK++G + GA+DYI+KPF+ EL+AR++ ++RR+R Sbjct: 62 LK--EASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRNF 119 Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +S+ ++ G + + V V G ++LT KE++++ L+ K+ +++ L ++ Sbjct: 120 EESIKLLGGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +DV I +LR+KL + K I+TVWG GY L E Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSE 218 >gi|304404343|ref|ZP_07386005.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304347321|gb|EFM13153.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ +A L+S + + G+ G+ ++D IILDL L + GFE+ Sbjct: 4 ILIIEDERTIAELQRDYLESHGYKADIEGRGDTGLRRALDGQYDLIILDLMLPNTDGFEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R + P+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 64 CRRIR-QEADIPIIMISAKKEEIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDRL 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 SR +SL + G L++N + V ++ + LT KE+ ++ LL+ N TKE Sbjct: 123 TGDSREARESLTIRG-LTINKLTRQVNIRDQDMLLTSKEFDLLLLLATHPNRVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E + V I +LR+K+ YI+TVWG GY L+ Sbjct: 182 ERVWGLESVGESSTVTVHIRRLREKIELDPSNPQYIDTVWGVGYRLK 228 >gi|311744313|ref|ZP_07718117.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311312486|gb|EFQ82399.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 334 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 120/218 (55%), Gaps = 5/218 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ++++ED+ A+A + L L + + V+V G G++ + ++LD+GL I G EV Sbjct: 112 VVVVEDEPAIADLVRLYLSRDGYGVHVERDGLRGLDAVRTLRPSLVLLDVGLPGIDGLEV 171 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R LR A TPV ++ D+V GLQ GADDY++KPF+ ELVAR+ A++RRS G Sbjct: 172 CRRLRAADDWTPVLFVTARDDEVDRVVGLQLGADDYVTKPFSPRELVARVAAVLRRSTGV 231 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++V G + V+ ++ V V+ + LT E+ ++ L R L +E L ++ Sbjct: 232 TGGAVLVVGAVRVDPGSRQVWVEEREVVLTATEFDLLLALMRRPGQVLRREQLLADVWGE 291 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D + +DV + ++R KL +A + I T G GY Sbjct: 292 ADYSGSRTVDVHVAQVRAKLGDA----SPIRTHRGVGY 325 >gi|229190104|ref|ZP_04317108.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228593327|gb|EEK51142.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 229 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L LK F V GE+ +++ D +LD+ L I G E Sbjct: 3 KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R + +L+ EDKV+GL GADDYI+KPF+ L ARI++++RR Sbjct: 63 VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + +++ +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GY+ +E+ + Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYMWKESMR 229 >gi|255035592|ref|YP_003086213.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254948348|gb|ACT93048.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 226 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD+ + + L + V G L + +D ILD+ L DI GF Sbjct: 1 MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R KI TPV ILS + +DK++ L GADDY++KP + EL++RI A+ RR Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H +++V DL VNLD V+ G I L+ KE++ + L +N LT+ L + Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV+I LR K+ K I TV G GY++ Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDK-LIRTVKGTGYMI 222 >gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 248 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD + + L + + V GE +E + ++LD+ + + G Sbjct: 16 RILIVDDDPMVRAVVGSCLVRQGYRVLEAADGEQAMERIVREKPALVVLDIEMPRVGGLA 75 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR + TPV I+S S ++D+V GL GADDY++KPFN+EEL+ARIRA++RR Sbjct: 76 VLSRLRESGNLTPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRRQAA 135 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + GD+ V LD +T +G L+ E +++LL+ T +++E + ++ Sbjct: 136 TETPIQRLQFGDVEVALDKRTAVCKGRTTRLSRTECAILDLLARYAGTPVSRERLFDLVW 195 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 PE + +D + +LRKK+ + +I+ V G GY L Sbjct: 196 GYTYLPETRTLDTHVWRLRKKIGDTGEEPRWIKNVPGVGYQL 237 >gi|313114522|ref|ZP_07800036.1| putative KDP operon transcriptional regulatory protein KdpE [Faecalibacterium cf. prausnitzii KLE1255] gi|310623145|gb|EFQ06586.1| putative KDP operon transcriptional regulatory protein KdpE [Faecalibacterium cf. prausnitzii KLE1255] Length = 236 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 6/231 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + I LK+ + GE I + + D ++LDLGL DI G EV Sbjct: 6 ILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAIMMTTSHNPDIMLLDLGLPDIDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R++R + P+ +LS S DK+ L +GADDY++KPF+ +EL+AR+R RR Sbjct: 66 IRSVRTWS-NLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLNLL 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G + V G L ++ A V + + +HLT EY+++ +L+ LT Sbjct: 125 ASDGINSPVFVNGPLKIDFSAGCVWLGENELHLTPIEYKLLCVLAHNVGKVLTHTSLTQK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ E ++ + V++ LRKKL + I+T G GY + DE Sbjct: 185 VWGSTQENDIASLRVYMASLRKKLERYPDAPHLIQTHVGVGYRMLRAENDE 235 >gi|299529796|ref|ZP_07043229.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|298722210|gb|EFI63134.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 224 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+ED+ +A ++ L+ + F V V K FD +LDLGL D G Sbjct: 1 MHVLLVEDNALVASGVKAGLQLQGFGVDVVGCASQADAALKSSHFDVCVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R + PV +L+ +++ ++ GLQ+GADDY+ KPF+ EL AR+ A++RR+ Sbjct: 61 HLLARWRRQGLELPVLVLTARDAVDQRIEGLQTGADDYLVKPFDLHELAARLHALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G IV GD+ V+L A +G + L+ +E+ ++ L L+ E + LY Sbjct: 121 GRTVDWIVLGDVKVDLAAGQAIREGSIVDLSRREWALLRALLQSPGRVLSLEQLRDSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++V + LR+KL G + +ETV G G+ L Sbjct: 181 YSLDVESNAVNVHVHHLRRKL-----GSDMVETVRGVGFRL 216 >gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28] gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28] Length = 237 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V G++ ++L ++ +ILD+ + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNKNNYNLVILDIMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ + L++NL+ TV I+LTGKE ++++ + TK Sbjct: 123 VLGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ + +I+T+WG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTIWGIGY 228 >gi|161520860|ref|YP_001584287.1| two component heavy metal response transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189352957|ref|YP_001948584.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] gi|221210152|ref|ZP_03583133.1| transcriptional activator protein CopR [Burkholderia multivorans CGD1] gi|160344910|gb|ABX17995.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189336979|dbj|BAG46048.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] gi|221170840|gb|EEE03306.1| transcriptional activator protein CopR [Burkholderia multivorans CGD1] Length = 232 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 132/228 (57%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ + ++ L E + V GEDG +++D ++LD+ L + GF Sbjct: 1 MKVLIIEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ ++D+VRGL+ GADDY++KPF+ EL+ R+RA+ RR+R Sbjct: 61 GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT +E+Q++ +L+ R L+K ++D Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + +++ I +LR KL K + T+ G GYVL A+D+ Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFPEK-LLHTIRGMGYVL--EARDD 224 >gi|221066634|ref|ZP_03542739.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220711657|gb|EED67025.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 224 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+ED+ +A ++ L+ + F V V K FD +LDLGL D G Sbjct: 1 MHVLLVEDNALVASGVKAGLQLQGFGVDVVGCASQADAALKSSHFDVCVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R ++ PV +L+ ++ ++ GLQ+GADDY+ KPF+ EL AR+ A++RR+ Sbjct: 61 HLLARWRSQGLALPVLVLTARDAVGQRIEGLQTGADDYLVKPFDLHELAARLHALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G IV GD++V+L A G + L+ +E+ ++ L L+ E + LY Sbjct: 121 GRTVDWIVLGDVNVDLAAGQAMRGGCAVDLSRREWALLRALLQSPGRVLSLEQLRDSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E ++V + LR+KL G + +ETV G G+ L Sbjct: 181 YSLDVESNAVNVHVHHLRRKL-----GSDMVETVRGVGFRL 216 >gi|297569293|ref|YP_003690637.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] gi|296925208|gb|ADH86018.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] Length = 233 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 2/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L I+DD+ + ++ L+ F + + ++ + + D IILDL L D G E Sbjct: 10 LLAIDDDQDILKVLKANLELHGFKLVTATSLTEARQVLESLQPDLIILDLMLPDGDGLEF 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +L+ P+ +L+ + DKV GL+ GADDY+ KPF EL+ARI+A +R S G Sbjct: 70 CCSLKSIHPQLPIIMLTARDKVSDKVVGLELGADDYVVKPFETSELLARIKARLRSSPGG 129 Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-D 180 A + ++ G+L V+L +TV V G I+LT KE+Q++ L +N +T++ L+ D Sbjct: 130 APNPVIRAGELEVDLRNQTVSVNGQEIYLTAKEFQLLACLVENRNNLVTRDEIRKRLWRD 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++IDV I LR+K+ +I TV GRGY E Sbjct: 190 SKIYSWSRVIDVHIQHLRQKIEKTPSRPRFIITVPGRGYRFAE 232 >gi|206972693|ref|ZP_03233632.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229068014|ref|ZP_04201325.1| Two-component response regulator [Bacillus cereus F65185] gi|229077615|ref|ZP_04210248.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|206732379|gb|EDZ49562.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228705695|gb|EEL58048.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228715117|gb|EEL66981.1| Two-component response regulator [Bacillus cereus F65185] Length = 233 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R AK P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|158319154|ref|YP_001511661.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139353|gb|ABW17665.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L++ED+ ++ + + L + F V GE+ +++ + ++LDL L I GF Sbjct: 5 IKVLVVEDETSIRKFLAINLNRDGFEVIEAASGEEALDIITRTQPKVVVLDLMLPGIDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + +R + + + +L+ S DK+ GL+ GADDY+ KPFN EL+ARIRA +R+ Sbjct: 65 EVCQNIRKSIPNIVIIMLTAKSQDMDKIMGLELGADDYMVKPFNPLELIARIRANLRKID 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++G +I + ++LDA+ +G I LT E+ M+++ N +++ LN Sbjct: 125 NAKGQLNKIISLREFELDLDAQKFYKRGIEIELTPIEFSMMKMFMEGNNKAFSRDEILNI 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++K +DV + ++R+K+ + IETVWG GY L+ Sbjct: 185 VWGKNYFGDMKTVDVHVRRIREKIEDDPSNPRIIETVWGVGYRLK 229 >gi|1408184|gb|AAB03659.1| two component response regulator [Mycobacterium tuberculosis str. Erdman] Length = 234 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 1/223 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + + L E V G + ++DA++LD+ L I GFEV Sbjct: 6 ILVVEDEPKMTALLARALTEEGHTVDTVADGRHTVASVDGGDYDAVVLDVMLPGIDGFEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR ++ TPV +L+ + D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 66 CARLRRQRVWTPVLMLTARGAFTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPIP 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 126 RPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDAA 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E I+DV+I LR K+ G + +ET+ G GY LR++ Sbjct: 186 YEARSNIVDVYIRYLRDKIDRPFGVTS-LETIRGAGYRLRKDG 227 >gi|16766096|ref|NP_461711.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414742|ref|YP_151817.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181286|ref|YP_217703.1| tricarboxylic transport: regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615674|ref|YP_001589639.1| hypothetical protein SPAB_03459 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552720|ref|ZP_02346472.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992501|ref|ZP_02573599.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233741|ref|ZP_02658799.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238695|ref|ZP_02663753.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244578|ref|ZP_02669510.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262111|ref|ZP_02684084.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464100|ref|ZP_02698017.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822904|ref|ZP_02834904.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444892|ref|YP_002042026.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450259|ref|YP_002046745.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472936|ref|ZP_03078920.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737394|ref|YP_002115739.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197266024|ref|ZP_03166098.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363670|ref|YP_002143307.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242096|ref|YP_002216758.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386900|ref|ZP_03213512.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929393|ref|ZP_03220467.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353737|ref|YP_002227538.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858053|ref|YP_002244704.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238909555|ref|ZP_04653392.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|325530291|sp|E1WA34|TCTD_SALTS RecName: Full=Transcriptional regulatory protein tctD gi|325530292|sp|P0CL17|TCTD_SALTY RecName: Full=Transcriptional regulatory protein tctD gi|11128401|gb|AAG31204.1|AF020810_5 TctD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|295218|gb|AAA27232.1| membrane associated regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421333|gb|AAL21670.1| tricarboxylic transport regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128999|gb|AAV78505.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128919|gb|AAX66622.1| tricarboxylic transport: regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365038|gb|ABX68806.1| hypothetical protein SPAB_03459 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403555|gb|ACF63777.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408563|gb|ACF68782.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459300|gb|EDX48139.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712896|gb|ACF92117.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633172|gb|EDX51586.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095147|emb|CAR60696.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197244279|gb|EDY26899.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288507|gb|EDY27884.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936612|gb|ACH73945.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603998|gb|EDZ02543.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321112|gb|EDZ06312.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273518|emb|CAR38501.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322727|gb|EDZ10566.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329319|gb|EDZ16083.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332210|gb|EDZ18974.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336574|gb|EDZ23338.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340766|gb|EDZ27530.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349080|gb|EDZ35711.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709856|emb|CAR34209.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247926|emb|CBG25759.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994894|gb|ACY89779.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159349|emb|CBW18867.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913807|dbj|BAJ37781.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087188|emb|CBY96954.1| Response regulator mprA Mycobacterial persistence regulator A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223577|gb|EFX48642.1| Tricarboxylate transport transcriptional regulator TctD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614392|gb|EFY11323.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621543|gb|EFY18396.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624404|gb|EFY21237.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626602|gb|EFY23407.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633538|gb|EFY30280.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638419|gb|EFY35117.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639722|gb|EFY36406.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643768|gb|EFY40318.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649454|gb|EFY45888.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655956|gb|EFY52256.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661351|gb|EFY57576.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662549|gb|EFY58757.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666923|gb|EFY63098.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671293|gb|EFY67416.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677700|gb|EFY73763.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681473|gb|EFY77503.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683872|gb|EFY79882.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715771|gb|EFZ07342.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131137|gb|ADX18567.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193739|gb|EFZ78942.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197473|gb|EFZ82610.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203288|gb|EFZ88317.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205234|gb|EFZ90209.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212753|gb|EFZ97564.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218105|gb|EGA02817.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221632|gb|EGA06045.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227156|gb|EGA11330.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230868|gb|EGA14986.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234781|gb|EGA18867.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238820|gb|EGA22870.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241520|gb|EGA25551.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248333|gb|EGA32269.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252901|gb|EGA36735.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256977|gb|EGA40686.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260548|gb|EGA44159.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264394|gb|EGA47900.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269528|gb|EGA52981.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624516|gb|EGE30861.1| regulatory protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628844|gb|EGE35187.1| regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989661|gb|AEF08644.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 224 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L F V G L + +LD+ + + G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR + PV +L+ S++ D+V+GL GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G+L + D +QG + LT +E ++ +L R+ ++++ ++ Sbjct: 121 GQVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + I+++I +LRKKL G I T+ G GYVL Sbjct: 180 LNDEVSPESIELYIHRLRKKLQ---GSDVRITTLRGLGYVL 217 >gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 231 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE + +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIELMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RRS Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227 >gi|88799721|ref|ZP_01115296.1| DNA-binding response regulator [Reinekea sp. MED297] gi|88777615|gb|EAR08815.1| DNA-binding response regulator [Reinekea sp. MED297] Length = 223 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 132/234 (56%), Gaps = 20/234 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI----ILDLGLTD 56 MR+LL+EDD L ++ +K + + V G DG EF + L + Sbjct: 1 MRVLLVEDDTELIARLQARIKQHGYALEVATNGVDG-------EFSGMELSLDLIILDLG 53 Query: 57 IPG---FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 +PG +VLR R + + TPV +L+ + ++V GL++GADDY+ KPF++EEL+AR+ Sbjct: 54 LPGKNGLDVLRHWRASGVETPVLVLTARDAWHERVDGLKAGADDYLGKPFHEEELLARMD 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ RR G + +I +G L++N D++TV + GH+ LTG E++++ + + L+K Sbjct: 114 ALARRRYGVSTDVITSGALTLNSDSQTVTDALGHQHQLTGVEFRLLRYFMMNPDVILSKT 173 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 H+Y+ + +I+V+I +LR++ GK+ I T G+GY+ + ++ Sbjct: 174 RLSEHVYEEDMLRDSNVIEVYINRLRQRF-----GKSTIVTKRGQGYLFQSGSQ 222 >gi|310641893|ref|YP_003946651.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309246843|gb|ADO56410.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus polymyxa SC2] Length = 237 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 128/231 (55%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D++ ++ ++L L E + V + G +G+E + +D IILD+ L +I G EV Sbjct: 5 VLVIDDEEKISRLLQLELSHEGYVVEIAQTGREGLEKALAHTWDIIILDVMLPEINGVEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R TP+ +++ ++ DKV GL GA+DYI+KPF EEL+AR+RA +R Sbjct: 65 LKQIRKVDNHTPIIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRNQLEP 124 Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A QS + L + ++V +G RI LT KE+ ++ L KN L ++ Sbjct: 125 AATASPKEDKQQSKLQVDSLVLEPKTRSVVREGKRIELTPKEFDLLLYLMEHKNQVLHRD 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + ++DV+I +RKK+ + K I+TV G GY +RE Sbjct: 185 QMIQDVWGFDFVGDTNVVDVYIRYVRKKIDHGY-KKKLIKTVRGVGYCIRE 234 >gi|1575690|gb|AAB38789.1| response regulator [Synechococcus elongatus PCC 7942] Length = 223 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/214 (33%), Positives = 116/214 (54%), Gaps = 7/214 (3%) Query: 14 HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73 H++ L E ++V G++ E+ + Y + A++LD + G E+ + LR A+ ST Sbjct: 14 HALHKALTQERYSVDWLTNGDEAWEMIQTYPYRALVLDWMVPGCSGLEICQRLRQAQDST 73 Query: 74 PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS 133 PV +L+ ++D V+GL +GADDY+ KPF EL+AR+RA++RRS L+ G Sbjct: 74 PVLVLTARDGLQDLVQGLDAGADDYLVKPFRLAELLARVRALLRRSPQTQTPLLQVG--- 130 Query: 134 VNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190 V LD VQ + LT +E+Q++E L L+++ L+ L+ EP ++ Sbjct: 131 VRLDPAQATVQVDDYSPMPLTAREFQLLEALMHHPGQILSRDQLLDQLWPMDAEPSSNVV 190 Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + LR+KL+ IETV+G GY LR + Sbjct: 191 AAQVRLLRRKLATYQADL-LIETVYGFGYRLRPS 223 >gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 232 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + +N+ ++TV + G RI+LT EY + L++ +N T E Sbjct: 125 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I +LR K+ +I+ VWG GY Sbjct: 185 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228 >gi|163791368|ref|ZP_02185779.1| hypothetical protein CAT7_10460 [Carnobacterium sp. AT7] gi|159873338|gb|EDP67431.1| hypothetical protein CAT7_10460 [Carnobacterium sp. AT7] Length = 222 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 113/202 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+ ED+ LA +I+++L++E + V G+D E E+D IILD+ + + G Sbjct: 1 MRLLIAEDEAELARAIQVILENEGYTVDSVHDGKDAYEYAVLAEYDGIILDIMMPKLSGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR TP+ +L+ S+IE+++ GL GADDY++KPF EL+ARIRA+ RR Sbjct: 61 EVLEKLRSEGNQTPILLLTAKSAIENRIDGLDLGADDYLTKPFAMGELLARIRAMTRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL +N D + I L+ KE Q+++LL + + + ++ Sbjct: 121 VLQANNLTFEDLELNKDIMRISNGQDEIKLSNKECQILQLLMENPKQIFSADQMIERIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLS 202 + E+ I V + LRKKL+ Sbjct: 181 WDSDIEMNSIWVHLSNLRKKLA 202 >gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 228 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I L+ + G + L +D +ILDL + + G Sbjct: 3 KILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGYDLVILDLMMPFMDGMS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR +R +I+TPV IL+ DK+ GL+ GADDY+ KPF+ ELVAR++A++ R+ Sbjct: 63 CLREMRTRRINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 122 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S + G+LS++ + TV+V G + LT KE+ ++ L+ K L++E L + Sbjct: 123 RTEASDSTMTFGELSIDTASHTVKVSGEEVSLTPKEFDLLVFLASNKGIALSREKILQKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ E + +D + LR L G YI TVWG GY +A Sbjct: 183 WNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPDA 226 >gi|289450843|ref|YP_003474420.1| putative transcriptional regulatory protein CutR [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185390|gb|ADC91815.1| putative transcriptional regulatory protein CutR [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 226 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++ L SI L+ + V G G ++ +D ++LD+ L + GF Sbjct: 1 MKLLVVEDEQDLRESIAEGLRLSGYAVDTAADGAAGEDMLAAGNYDLVVLDINLPYLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR V IL+ + I+D VRGL +GA+DY+ KPF+ EL ARIR+++RR + Sbjct: 61 TLLERLRAVNKEIRVIILTARTDIDDLVRGLDTGANDYLVKPFHFVELEARIRSLLRRRQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 LI S NL K V G + LT KE ++E L L + +++E L H++ Sbjct: 121 VQEDLLITCQGFSFNLKTKAVSCAGGELRLTSKELSILEYLLLNRGRHVSQEELLEHVWE 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 DG +E + V + LRKKL AA G+ I GRGY++ + + Sbjct: 181 DGMNEFS-NTVRVHVSALRKKLK-AATGRVVITNEIGRGYIIEADGTE 226 >gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144] gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144] gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis FRI909] Length = 241 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ G++ EL + I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 65 ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTA 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 NTEQSEPHARDIIEFSHLVIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ ++ I+TVWG GY DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEVKPSDEPT 240 >gi|158339279|ref|YP_001520456.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309520|gb|ABW31137.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 226 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ + ++ LK+ F V + G L +FD +ILDLGL G Sbjct: 3 RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R P+ +L+ ++D V+ L+ GA+DY++KPF EEL+ARI+ +R R Sbjct: 63 VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122 Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 AQ + + G+LS++L + V + L+ KE+ + E+L ++KE LN Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ +P II+V+I LR+K G YIETV G GY L + Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRKF-----GSQYIETVRGMGYRLNSSG 225 >gi|146311299|ref|YP_001176373.1| DNA-binding transcriptional regulator PhoP [Enterobacter sp. 638] gi|145318175|gb|ABP60322.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 224 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 2 MRVLVVEDNALLRHHLKVQLQEMGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S PV +L+ +DKV L +GADDY++KPF+ EE+ ARI+A++R Sbjct: 59 DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARIQALMR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + I LT EY ++E L ++K+ + Sbjct: 119 RNSGLASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNSGKVVSKDSLMLQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQHPHDVITTVRGQGYLF 221 >gi|91786148|ref|YP_547100.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91695373|gb|ABE42202.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 226 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD A+A SI L+ + N+ + L D D +ILD+GL D G + Sbjct: 5 RVLLVEDDPAIARSIVFALERDGINLTHSLLLSDARRQLLVRTPDVVILDIGLPDGSGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + LR A S PV ILS D+V GL+ GADDY+SKPF+ EL+AR+R+++RR+R Sbjct: 65 LCKELRAAG-SMPVLILSAHGEEIDRVLGLELGADDYLSKPFSPRELLARVRSLLRRARM 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G ++ + + + G ++LT +E+ ++ L + +++ L ++ Sbjct: 124 PPAAPVPANGPFEIDAAGQRMRLHGRPLNLTRREFGLLADLLHHRGRIRSRDELLGAVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D I LR KL AA ++YI T G GY L Sbjct: 184 ADSDSTDRTVDTHIKTLRAKLQEAAPERDYIVTHRGMGYCL 224 >gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 233 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 11/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GE+ + Y + ++LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDNYSPNLVLLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK TP+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIR-AKSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q + + +NL +V G + + KE +++ L+ N T+E Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR+K+ + + TVWG GY Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREKIKDHPTWS--LGTVWGIGY 228 >gi|312140719|ref|YP_004008055.1| two component system response regulator [Rhodococcus equi 103S] gi|325675642|ref|ZP_08155326.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|311890058|emb|CBH49376.1| putative two component system response regulator [Rhodococcus equi 103S] gi|325553613|gb|EGD23291.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 226 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 116/218 (53%), Gaps = 1/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD+A+A + L E + V + G +E EF+ +ILDLGL + G EV Sbjct: 4 VLLAEDDEAIAAPLSRALGREGYTVTIEQTGPSALERALTGEFELLILDLGLPGMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + V +L+ + D V GL +GADDY+ KPF EL+AR+RA++RRS G Sbjct: 64 CRQLRAHSLDLAVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELMARVRALLRRSGGG 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ + + A+ V V G I L KEY+++ +L ++++ L ++ Sbjct: 124 EDVVVEVAGIRLEPAARRVLVNGSEIALANKEYELLRVLLEHAGQVVSRDTILREVWGDV 183 Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219 + K +D+ + LR+K+ + AG I TV G G+ Sbjct: 184 ELRGSKTLDMHMSWLRRKIGDEGAGADRKIATVRGVGF 221 >gi|227537811|ref|ZP_03967860.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227242425|gb|EEI92440.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 232 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDD A+ I L NFN+ V G G+E+ +D IILD+ L + G Sbjct: 1 MEILLVEDDSAVVSLIRRGLSELNFNISVALNGLTGLEMAVSGSYDLIILDVMLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116 V R +R K + P+ ILS + ED V G +S ADDY++KPFN EEL AR+ R I Sbjct: 61 RVCRNIRQQKKNVPILILSALDQPEDIVDGFKSDADDYLTKPFNMEELKARVSRFSRKIG 120 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + S+ S + DL+++ +K + Q I LT E++++E L + +++ L Sbjct: 121 QTSKVEENSNLEFADLTLDYSSKIAKRQDVDIALTATEFRLLEFLMKNQKRVVSRIDILE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++DV+I LR K+ + K + TV G GYVLR+ Sbjct: 181 SVWGMDFNLSTNVVDVYINYLRNKI-DKGYNKKLLHTVVGMGYVLRD 226 >gi|221196519|ref|ZP_03569566.1| transcriptional activator protein CopR [Burkholderia multivorans CGD2M] gi|221203188|ref|ZP_03576207.1| transcriptional activator protein CopR [Burkholderia multivorans CGD2] gi|221177122|gb|EEE09550.1| transcriptional activator protein CopR [Burkholderia multivorans CGD2] gi|221183073|gb|EEE15473.1| transcriptional activator protein CopR [Burkholderia multivorans CGD2M] Length = 232 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 132/228 (57%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ + ++ L E + V GEDG +++D ++LD+ L + GF Sbjct: 1 MKVLIIEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ ++D+VRGL+ GADDY++KPF+ EL+ R+RA+ RR+R Sbjct: 61 GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT +E+Q++ +L+ R L+K ++D Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + +++ I +LR KL K + T+ G GYVL A+D+ Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFPEK-LLHTIRGMGYVL--EARDD 224 >gi|83645259|ref|YP_433694.1| response regulator [Hahella chejuensis KCTC 2396] gi|83633302|gb|ABC29269.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 235 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+D+ + + + L+SE + V +G+ L DAI+LDLGL D+ G E Sbjct: 7 RILVIDDEPQILRFLRISLRSEGYEVLQAGSATEGLMLAATEAPDAIVLDLGLPDMDGQE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR LR TPV +LS SS +KV L +GA+DY++KPF E VARIR ++R Sbjct: 67 ALRQLR-RTCRTPVLVLSVRSSETEKVEALDNGANDYVTKPFGIREFVARIRVLLRDREP 125 Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + + L ++ ++V + G IHL+ KEY ++ L+ + +T++ L Sbjct: 126 AALRPSADIYHSAGLHIDFVKRSVTLDGEDIHLSKKEYALLARLAATPDHVVTQQQLLAE 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + + + + KLR KL +A ++ T G GY L Sbjct: 186 IWGPTHKEDTHYLRIVVAKLRNKLGDAPSAPRFLVTEQGVGYRL 229 >gi|332654158|ref|ZP_08419902.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16] gi|332517244|gb|EGJ46849.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16] Length = 243 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 6/228 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K +++ I L + ++ G++G+ L + D I+LDLGL D+ G ++ Sbjct: 16 ILVIEDEKTISNFICRALTANDYKAIPAFSGKEGLSLFFSHGPDLILLDLGLPDMDGMDI 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 L+ + TPV I+S +KV+ L GADDYI KPF EL+ARIR +RR Sbjct: 76 LKEVSGLPQETPVIIISARDRESEKVKALDMGADDYIVKPFGVSELLARIRTTLRRSDRL 135 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+G + + DL+V++ V + G IH T E++++ELL + LT + L Sbjct: 136 KLSQGSQKDVYHIKDLTVDIAKHQVLLDGEEIHFTQNEFKILELLCIHAGKVLTYDFILE 195 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 H++ +I+ V + +R+KL Y+ T G GY + E+ Sbjct: 196 HVWGPYGGTSNQILRVNMANIRRKLKENPSDPKYVLTELGIGYRMLED 243 >gi|110802452|ref|YP_698343.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682953|gb|ABG86323.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + + +L+ E F V G +G +F++FD ++LDL L I G Sbjct: 7 ILVVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R K +TP+ ++S +++EDK+ L+ GADD+ISKPF+ E++AR+ A++RRS+ Sbjct: 67 IDEIRKIK-NTPIIVISAKTTMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S I +L + ++ V+V+G I LT KE++++ELL TK + Sbjct: 126 NSSEGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + I+V I LR K++ +YI+T+WG G+ Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGF 226 >gi|310642055|ref|YP_003946813.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309247005|gb|ADO56572.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 235 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 8/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK + I L+++ + + + GE I + D +ILDLGL D+ G ++ Sbjct: 6 ILVVEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSRQPDLMILDLGLPDMDGVDI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ LR + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R +RR R + Sbjct: 66 IKKLREWS-NMPIIVVSARSEDRDKIDALDAGADDYLTKPFSVEELLARLRVSLRRIRVN 124 Query: 123 AQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ + G+L ++ A V + IHLT EY+++ LL+ LT L+ Sbjct: 125 GDKILKDASSFINGNLKIDYAAGCVWIGEKEIHLTPSEYKLLCLLAKHVGKVLTHNFILH 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ G ++ + VF+ LRKK+ + +I+T G GY + + D Sbjct: 185 EIW-GSHSYDIPALRVFMATLRKKIEKTSSQPKFIQTHIGVGYRMLQVGDD 234 >gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] Length = 236 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + L+ E + G D + + D +ILD+ + + G E Sbjct: 12 RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 L LR PV L+ ++ D+V+GL++GADDY++KPF+ +E+ AR+ ++R R Sbjct: 72 TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGR 131 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ A +++ DL++++D+ V G I LT E++++ L L+K+ L+ + Sbjct: 132 TQQAASTVLQVADLTLDMDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +V +++++I LRKK+ A I TV G GY++RE Sbjct: 192 WSYDFGGQVNVVELYISYLRKKID--ADRPALIRTVRGAGYIMRE 234 >gi|293605156|ref|ZP_06687545.1| two component response regulator IrlR [Achromobacter piechaudii ATCC 43553] gi|292816412|gb|EFF75504.1| two component response regulator IrlR [Achromobacter piechaudii ATCC 43553] Length = 230 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+I++DK A ++ L + V++ G G+ + K + +D I+LD+ L + GF Sbjct: 1 MKVLVIDNDKTSAEALSHTLAEQGQIVHIATDGVSGLRIAKTFPYDLILLDVQLPVMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + + PV I+S ++ +V+GL GADDY+ KPF ELVAR++AI RRS Sbjct: 61 TVLRELR-KESNVPVLIVSARDELQARVQGLSEGADDYLGKPFATCELVARMKAISRRSS 119 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL- 175 AQ ++ GDL + L ++ +G RI LT E+ ++E L +RK+ + M L Sbjct: 120 TSDDSGAQHVLRVGDLELQLLSRKALREGQRIRLTAIEFALLERL-MRKHGEVQSRMNLA 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 H++ + IDV + +LR K+ + G + + TVWG GYV+ + Sbjct: 179 AHVWGINFDRGTNAIDVAVRRLRMKMDDPFGSR-LLHTVWGLGYVMEQ 225 >gi|256390005|ref|YP_003111569.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356231|gb|ACU69728.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD A+ +++L L + V V GE+ + K D I+LD+ L + GFEV Sbjct: 4 LLLVEDDAAIRTALQLALTRQGHQVAVAASGEEALATYKTVRPDLIVLDVMLPGVDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ +L+ S D V GL+SGADDY+ KP L ARIRA++RR Sbjct: 64 CRQIRRTE-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRGERE 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + V GDL+V+ A TV G I LT E +++ LS L+++ L +++ Sbjct: 123 TSDVAVYGDLTVDRSAMTVSKHGTAIPLTPTELKLVMELSRHAGQALSRQQLLRLVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++D + +LR K+ + I+TV G GY L Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPAEPTLIKTVRGVGYRL 221 >gi|225573642|ref|ZP_03782397.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM 10507] gi|225039010|gb|EEG49256.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM 10507] Length = 233 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD ++ I LK+ + G+ I + D ++LDLGL D+ G E+ Sbjct: 6 ILVVEDDPSIRKLITTTLKAHEYRYLSAANGQSAILEASSHNPDIVLLDLGLPDMDGVEI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R +R A + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IRKIR-AWSNMPIIVISARSEDSDKIEALDAGADDYLTKPFSVEELLARLRVTQRRLAMM 124 Query: 119 -SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +R +S+ G L ++ A V + + +HLT EY+++ LLS LT Sbjct: 125 QNRSQVEESVFTNGSLKIDYVAGCVYLNENELHLTPIEYKLLCLLSQNIGKVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E ++ + VF+ LRKK+ +A YI+T G GY Sbjct: 185 AIWGSSWENDIASLRVFMATLRKKIESAPDSPQYIQTHIGVGY 227 >gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 228 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 129/222 (58%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L++ +NV V G+ E + + ++LD+ L I G E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV L+ GADDY+ KPF +EL+AR++A++RR G Sbjct: 67 VLKWIR-KDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V + +DA + +V G + KE++++ L+ KN T++ L ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 G D P + + +DV I +LR+KL+ GG+++ +ETVWG GY Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLN---GGEDWQLETVWGVGY 223 >gi|83749541|ref|ZP_00946528.1| Hypothetical Protein RRSL_00791 [Ralstonia solanacearum UW551] gi|207744853|ref|YP_002261245.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|83723777|gb|EAP70968.1| Hypothetical Protein RRSL_00791 [Ralstonia solanacearum UW551] gi|206596263|emb|CAQ63190.1| response regulator protein [Ralstonia solanacearum IPO1609] Length = 236 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 15/237 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+A+A I L V G E D +ILDLGL I G Sbjct: 1 MRILLIEDDRAIASGIHAGLTQAGHRVLAVHDGVFAAEHLARQSHDLVILDLGLPGIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R TPV IL+ S++DKV GL +GADDY+ KPF ELVAR++A++RR Sbjct: 61 TLLSQYRARDRGTPVLILTARDSLQDKVDGLNTGADDYLLKPFEMLELVARVQALLRRRG 120 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + IV G L ++ + + V + L+ +E+ ++ELL LR+ ++K + Sbjct: 121 DNGEPMPRPDIVVGRLRLSGAERRIFVDAAALELSPREFAVLELLMLRQGRVVSKVQLQD 180 Query: 177 HLYD--------GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 HL G D I+V++ ++R+K+ + I TV G GY+L+ A Sbjct: 181 HLASFGHALGEAGHDVVGDTAIEVYVHRVRRKIEQT---EAEIVTVRGFGYLLQARA 234 >gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 241 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD L + L+ E + V G G+ E +ILD+ L ++ GF Sbjct: 10 RILIIDDDVELCSLLLRCLEREGYEVCAAHTGAAGLNRLDEKEAVLVILDVMLPEMSGFA 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL LR K S PV +L+ S +DKV+GL++GADDY++KPF+ E +AR+ +++RR Sbjct: 70 VLSELRKTK-SIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLIRRFTV 128 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +SLI G L +N ++V VQ I LT KE+ ++ L+ TK+ Sbjct: 129 LNRENPCKEKSLIFKGGLLINPVERSVSVQEKEIELTNKEFDLLYFLAKNPGQVFTKKQL 188 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + +I KLR+K+ YI+T+WG GY + A Sbjct: 189 YTQIWQEDYAFDDGNMMAYISKLRRKIEKKEKETAYIQTIWGVGYRFNKGA 239 >gi|296122126|ref|YP_003629904.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296014466|gb|ADG67705.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 230 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED++ + ++ L +E + V GE+G+ + D +ILDLGL D+ G +V Sbjct: 8 ILIIEDEQPIRRFLKASLSNEGYRVSEAVAGEEGLRMASAQPPDLVILDLGLPDLDGQDV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+ LR ++PV +LS K++ L SGADDY++KPF EL+AR+R +R + Sbjct: 68 LKRLR-EWYTSPVIVLSARDQETQKIKALDSGADDYLTKPFGIGELLARMRTAMRHAHRV 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G L V+L A+ V +HLT EY+++ + LT L ++ Sbjct: 127 GPEATTATIGALRVDLAARLVYRSDKEVHLTPLEYKLLVTMIKHAGKVLTHRFLLREVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D E + VFI +R+KL + YI T G GY L Sbjct: 187 PQDSQENHYLRVFIASMRRKLEDDPARPRYILTEQGVGYRL 227 >gi|159185227|ref|NP_355418.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159140490|gb|AAK88203.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 226 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ L+ + +L+ + V V G FD +ILDL L ++ G Sbjct: 1 MRILLVEDNQVLSEGLSALLRGSGYAVDVVSDGASADAAIAAESFDLVILDLNLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR++R + V IL+ + E+KV+GL GADDY+ KPF+ E AR+R ++RR+ Sbjct: 61 EVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S + G + +L ++T G + + +E ++E+L +R + KE + L Sbjct: 121 GLRSSALSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ I+ ++ +LRK+L A G ++T G GY L Sbjct: 181 FDDDISANAIEQYVSRLRKRL--APHGLT-VKTARGIGYYL 218 >gi|77456430|ref|YP_345935.1| two component heavy metal response transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77380433|gb|ABA71946.1| heavy metal sensing two-component sytem,response regulator [Pseudomonas fluorescens Pf0-1] Length = 226 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ A+ I L F V V G DG + E+D IILD+ L + G+ Sbjct: 1 MRLLVVEDEAKTANFIAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R + +TPV L+ +IED+VRGL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 QLLQLIR-QRGATPVLFLTAKDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL +++ + V G RI LT KE+ ++ LL+ R+ L++ + + +++ Sbjct: 120 LREAESYNIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWN 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V + +LR K+ + K I TV G GY L Sbjct: 180 LNFDSDTNMVEVAVRRLRSKVDDPYMPK-LIHTVRGVGYQL 219 >gi|300867618|ref|ZP_07112266.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300334379|emb|CBN57436.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 233 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 123/235 (52%), Gaps = 12/235 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D+ L + +L E + V V D G G E +D +ILD L G Sbjct: 1 MKILLVDDEIELTDPLSRVLTREGYEVDVADNGATGSEFATQGNYDLLILDWMLPGKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + + LR +TPV L+ +++D+V+GL +GADDY+ KPF EL+AR+RA++RR Sbjct: 61 AICQKLRSEGRATPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRPS 120 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G + L V DL ++ + + +G I L+ KE Q++E L LT Sbjct: 121 ILETGSSNFSGDSNRLQVA-DLELDFENQLAYRRGRTIDLSEKECQLLEYLMRHPGQLLT 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E +L+ ++P ++ I LR+K+ AAG I TV+G+GY L E + Sbjct: 180 HEQIHQYLWPDGEKPSSNVLAAQIRLLRRKI-EAAGDLPLIHTVYGKGYRLGEGS 233 >gi|284036211|ref|YP_003386141.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283815504|gb|ADB37342.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 226 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLI+ D + L + + + G G+ + FD I+LD L + G Sbjct: 1 MKILLIQSDADYLDVLHRTLSERQYTLELASDGYSGLAMGLHARFDMIVLDTHLPRMNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+R LR STPV +LS DK RGL +GADDY+ +P + +EL+ARI A+ RR Sbjct: 61 DVIRRLRQENDSTPVLLLSRFGESADKARGLYAGADDYLVRPCDSDELLARIYALHRRRT 120 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G +A S++ +L +N+ K RI LT +E+Q++E L +TK L + Sbjct: 121 GGFNAPSILTVDNLELNIAEKVAYRANQRIRLTAREFQLLEFLIKNAGRVVTKAQILEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D ++V+I LRKK+ K I T G GY+LR + Sbjct: 181 WDNPTVSSTNKVEVYINFLRKKIDRDFDHK-LIHTAMGVGYLLRSGS 226 >gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24] gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24] Length = 243 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 77 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + +N+ ++TV + G RI+LT EY + L++ +N T E Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEIY 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I +LR K+ +I+ VWG GY Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 239 >gi|168202297|ref|ZP_02629867.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169298694|gb|EDS80773.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + + +L+ E F V G +G +F++FD ++LDL L I G Sbjct: 7 ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R K +TP+ ++S +++EDK+ L+ GADD+ISKPF+ E++AR+ A++RRS+ Sbjct: 67 IEEIRKIK-NTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S I +L + ++ V+V+G I LT KE++++ELL TK + Sbjct: 126 NSSEGVEKIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + I+V I LR K++ +YI+T+WG G+ Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGF 226 >gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8] gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8] Length = 225 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 122/220 (55%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL++DD A+ + L+ F V + GE +EL F + D +ILDL L + G Sbjct: 1 MKVLLVDDDPAILEVLGAFLRGAGFEVLEAEDGEKALEL--FPQADLVILDLMLPKVGGL 58 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + P+ IL+ ED+V GL+ GADDY+ KPF+ E+VAR++A++RR+ Sbjct: 59 EVARLIRQERPELPLLILTAKGEEEDRVLGLELGADDYVVKPFSPREVVARVKALLRRA- 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + L V G L + + + G + L+ E+ ++ L+ ++E L ++ Sbjct: 118 GLREEL-VYGPLRLLPTRREAYLAGKPLPLSRLEFDLLLTLAQHPGVVFSRERLLERVW- 175 Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G P V +++DV I LRKKL + +IETV G GY Sbjct: 176 GPGFPGVDRVVDVHIAALRKKLGDDPENPRFIETVRGVGY 215 >gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 235 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + I L+ NF V G+ ++L + ++LD+ L D+ GFE Sbjct: 5 KILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAEDKNPSLVVLDVMLPDMDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR P+ ILS DK+ GL+ GADDYI KPFN EL ARIR+++RR+ Sbjct: 65 ICARLRERHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRRTSR 124 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + G + + + + G + LT +E+Q+++ ++N +T++ L+ Sbjct: 125 NTSPVRPAALELGPYLLEVKTQRLYKSGRLVKLTAREFQLMKFFLQKRNEPVTRDELLDE 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + K +DV I +LR+K+ + +++TVWG GY +E+ Sbjct: 185 VWGLNYFGDPKTVDVHIRRLREKIEDEPSSPLFLKTVWGYGYCFQESG 232 >gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis HTCC2503] gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis HTCC2503] Length = 230 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A +E L E + + + GE+ + + + D I+LD L + G E Sbjct: 5 RILIVEDEETIAGLLEYNLSREGYETLIAEDGEEALIQIEESKPDLIVLDWMLPKVSGIE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR+ + P+ +L+ + D+VRGL +GADDY+ KPF+ EL +RI+A++RR+ Sbjct: 65 VCRRLRMKPETEGIPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLRRA 124 Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + VT GD+ ++ A V +HL E+++++ L ++E LN + Sbjct: 125 RPSLIAEAVTCGDIQIDRAAHRVRRGEKEVHLGPTEFRLLDHLIQNPGRVFSREQLLNAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK L NA G +N I TV GY L Sbjct: 185 WGSDVFVEARTVDVHIGRLRKAL-NAHGHQNPIRTVRSAGYAL 226 >gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 231 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 128/222 (57%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+++EDD + + L L + + V + G + L + + D I+LD+ + + G EV Sbjct: 6 IMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEKPDLILLDVEMPGMDGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 R +R+ K + P+ +S + K++GL++G DDYI+KPF+ EL ARIRAI+RR+ R Sbjct: 66 CRRIRL-KTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRRNGWR 124 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +++ DL +++DA+ + ++G ++ L KE+Q++ LL+ N T E + Sbjct: 125 NNVEDQLTILKYKDLHIHVDARELYLEGAQVKLYHKEFQLLLLLAQTPNRVWTAEQLYDQ 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +V+ + V I KLRKK+ +I+TV G GY Sbjct: 185 VWGYYSEGDVQTVKVHISKLRKKIEKDPANPEFIQTVRGFGY 226 >gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 238 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+L EDD A + L+ E V V GE + + E D +ILD+ L + G V Sbjct: 14 IVLAEDDPKQAELVRRYLEHEQHTVTVAPTGEAALAEIRAAEPDLLILDVMLPGMNGLTV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A P+ +L+ S+ +D ++GL GADDY++KP++ EL+AR+R ++RR+ Sbjct: 74 CRTIR-ASSDLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLLRRTNAA 132 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G L+V+ + V V G+RI T E++++E+++ R + T+ L HL+ Sbjct: 133 KDGPLTVGALTVDKEKHEVAVGGNRIETTPGEFRILEVMASRPDQVFTRAQLLEHLHGFD 192 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + IDV + LRKK+ + TV+G GY L Sbjct: 193 RYITQRAIDVHVMNLRKKIETNPRKPAKLLTVYGVGYKL 231 >gi|294497050|ref|YP_003560750.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294346987|gb|ADE67316.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 225 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD +L H I LK E + V G++G+ L + +DA+ILD+ L + G Sbjct: 1 MRVLVVEDDASLLHGIVEGLKEEGYEVDCASEGDEGLFLAEQNIYDALILDIMLPGMTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR K+ T V L+ S+ED+V+GL GADDY+ KPF EL AR+R ++R + Sbjct: 61 DILKKLRKQKVLTKVIFLTAKDSVEDRVKGLDYGADDYLVKPFAMAELFARLRVMLRDLQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I G +S+ V + G + LT KE+Q++E K L ++ N ++ Sbjct: 121 AE-EGMISYGPISIREANHEVMINGSALTLTIKEFQLLEYFIRNKEQILIRDQIFNRVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVLR 222 + V ++DV++ LRKKL N G Y+ TV G G++L+ Sbjct: 180 FTSDVGVGVVDVYVHHLRKKLQPFNCDG---YVRTVRGVGFMLK 220 >gi|237795357|ref|YP_002862909.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229261731|gb|ACQ52764.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + +++ G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFQDQGYSIITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 ICQKIR-DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I G L+++++++ V + I T KE+ ++ELL+L +KE + Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + + I K+R K N+I TVWG GY +N Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKINASLNHIATVWGVGYRWEKN 227 >gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 242 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E + +Y G++ +++ YE D +ILD+ + G EV Sbjct: 16 ILIIDDDKEIVELLAVYLRNEGYKIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RR Sbjct: 76 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 134 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ + +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 135 NATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ +I TVWG GY Sbjct: 195 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 238 >gi|225866652|ref|YP_002752030.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225790714|gb|ACO30931.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLVEDEISIAELQRDYLEISDFQVDVEHSGEMGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ ++ V + I T KE+ ++ N L KE Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRSRKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|225388689|ref|ZP_03758413.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme DSM 15981] gi|225045287|gb|EEG55533.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme DSM 15981] Length = 219 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 116/201 (57%), Gaps = 3/201 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ +A I L + G + L + +D I+LD+ L G+ Sbjct: 1 MRILVVEDEEMIADIISAGLTRTGYQCESVYDGAEAAGLLEAKRYDLILLDIMLPGADGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ ++ +TPV ++ + +EDKVRG + GADDYI+KPF EL AR+ A++RR Sbjct: 61 ELMEYIK--NYNTPVIFITARTRLEDKVRGFKLGADDYITKPFELAELTARVEAVLRRY- 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++ I + V++++KTVE GH + LT KEY ++ L +N L +E ++ Sbjct: 118 GKSRDKIAVAGIEVDMESKTVEKDGHPVELTAKEYDLLLLFLRNRNIALYRERIYEEVWG 177 Query: 181 GRDEPEVKIIDVFICKLRKKL 201 G +P+ + +D+ + +L++K+ Sbjct: 178 GEFDPDSRTVDIHVQRLKRKM 198 >gi|217970504|ref|YP_002355738.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217980166|ref|YP_002364216.1| heavy metal response regulator [Thauera sp. MZ1T] gi|217507831|gb|ACK54842.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217508337|gb|ACK55122.1| heavy metal response regulator [Thauera sp. MZ1T] Length = 228 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 12/230 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 M+IL++ED+ LA E + K+ N YV D+ G E L +D ++LD+ L + Sbjct: 1 MKILVVEDELKLA---EYLRKALTENSYVVDVAHSGTEGRYLAIEGHYDLVLLDVMLPGL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VLR LR K PV +L+ +ED+V+GLQ+GADDY+ KPF EL+AR++A++R Sbjct: 58 DGFAVLRELRRDK-HVPVLMLTARDKVEDRVKGLQAGADDYLVKPFALSELLARVQALLR 116 Query: 118 R----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R + G +++ DL ++L + G R+ LT KE+ ++ LL R L++ Sbjct: 117 RGALPTPGQDSTVLKLADLELDLVRRKASRSGQRLDLTAKEFTLLTLLLRRHGQVLSRTA 176 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D E +++V + +LR KL + K + TV G GYVL + Sbjct: 177 LAEQVWDMNFESNTNVVEVAVRRLRSKLDDPF-AKKLLHTVRGMGYVLED 225 >gi|91781372|ref|YP_556579.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|91694032|gb|ABE37229.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 224 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 9/223 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MRIL+IED+ A + E +L YV D+ G DG+ L +D I+LD+ + ++ Sbjct: 1 MRILVIEDE---AKTGEYLLNGLTEAGYVVDVAANGIDGLHLANEMRYDLILLDVMMPEM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ V++ L A++ TPV LS ++ED+++GL GADDY+ KPF+ EL+ARIR I+R Sbjct: 58 DGWSVMKKLG-ARLDTPVLFLSARGTLEDRLKGLDLGADDYLVKPFSFAELLARIRIILR 116 Query: 118 RSRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + Q + GDL +++ + VE G RI LT KE+ ++ + L++ + + Sbjct: 117 RGQPQKQEERLEVGDLHIDVPKRRVERGGTRITLTNKEFNLLLFFVQHQGQVLSRALIAS 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + + ++DV + +LR+K+ + I TV G GY Sbjct: 177 RVWDMNFDSDSNVVDVAVRRLRQKIDEPFEVR-LIHTVHGVGY 218 >gi|19551523|ref|NP_599525.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389170|ref|YP_224572.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323036|dbj|BAB97665.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324503|emb|CAF18843.1| PUTATIVE TWO COMPONENT RESPONSE REGULATOR [Corynebacterium glutamicum ATCC 13032] Length = 222 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 13/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL EDD +A I L E F VT+ G + +FD ++LDLGL + G + Sbjct: 3 KILLAEDDAGIADFIVRGLIREGFECEVTESGAEAFARAHSGDFDLMVLDLGLPHMDGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR +++ P+ +L+ ++IED++R L+ GADDY+ KPF EL+ARI+ +R ++ Sbjct: 63 VLEQLRNLQVTLPIIVLTARTNIEDRLRTLEGGADDYMPKPFQFAELLARIK--LRLAKH 120 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q ++ GDL ++L + V + G L+ +E ++E L L++ L Sbjct: 121 TPQETPTDARVLRNGDLELDLRTQRVLIDGSWHDLSRREVDLLETLMRHPGQILSRVQLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D +P ++DV+I LRKK+ G + +ET+ G GY LR Sbjct: 181 RLVWDMDWDPGSNVVDVYIRALRKKI-----GAHRVETIRGSGYRLR 222 >gi|332687247|ref|YP_004457021.1| phosphate regulon transcriptional regulatory protein PhoB [Melissococcus plutonius ATCC 35311] gi|332371256|dbj|BAK22212.1| phosphate regulon transcriptional regulatory protein PhoB [Melissococcus plutonius ATCC 35311] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + + +E ++V G++ + ++ + D IILD+ + ++ G Sbjct: 1 MKILIVDDDKEIVELLSIYIHNEGYDVVKAYDGKNALNKVHTIPDIDLIILDIMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ LR + P+ +L+ ++ DK++GL +GADDY++KPFN E++AR+++I+RRS Sbjct: 61 MQVVKKLR-KESQIPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +++ G L +N D+ V+ + G I LT E+ ++ LLS N + + Sbjct: 120 NIKPTTNEPAILEVGTLIINKDSHEVKTIDGKEIQLTALEFGILYLLSSHPNHVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224 >gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM 15053] gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM 15053] Length = 234 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 126/227 (55%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F+ + GE + Y+ + I+LDL L I G++ Sbjct: 6 KILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYQPNLILLDLMLPGIDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK + P+ +LS + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + Sbjct: 66 VCREIR-AKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124 Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ D + +NL +V V G + + KE +++ L+ N T+E Sbjct: 125 VPKAEEPAEDKGKCVEYPGIVINLTNYSVVVDGANVDMPPKELELLYFLASSPNQVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + +DV I +LR+K+ + + + TVWG GY Sbjct: 185 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHSTWG--LSTVWGIGY 229 >gi|172058932|ref|YP_001815392.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991453|gb|ACB62375.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 225 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 119/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDDK LA + L L+ + V V G + IE C+ + +D ++LD + G Sbjct: 1 MRILIAEDDKRLAKMLRLHLERAGYQVDVAHDGLEAIEQCQTFRYDLLVLDWMMPHKSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR + + +L+ + D V GL SGADDY+ KPF EL+AR+RA+ RR + Sbjct: 61 EVATELRGERFEGGILMLTARDTEIDLVHGLDSGADDYLVKPFQANELLARLRALSRRQK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + +L +++ +T+ G + LT +E++ + LL R + +E+ + ++ Sbjct: 121 KAFVSTVSYQELELDITTQTISYAGQLLELTRREFEFLSLLLRRPEQVMGRELIIEVVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +D + +RKKL +AAG I+TV G GY L Sbjct: 181 IGADITDNALDALVRLVRKKL-DAAGAPALIQTVRGFGYRL 220 >gi|229819736|ref|YP_002881262.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565649|gb|ACQ79500.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 227 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ I ++L+S++F+ D G +E + + D ++LDL L G E Sbjct: 4 KILVVDDDPAISEMIGIVLESDDFDAVFCDDGALAVERFREEKPDLVLLDLMLPGKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S D VRGL++GADDYI+KPF +ELVAR+RA +R+S Sbjct: 64 VCREIRRTS-GVPIVMLTAKSDTVDVVRGLEAGADDYIAKPFKPKELVARVRARLRQSDD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q + GDL +++ V I LT E+ ++ L+ + T+E L ++ Sbjct: 123 GEQERLRIGDLVLDVAGHRVLRGDETISLTPLEFDLVVALARKPWQVFTREALLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + + ++++V + +LR K+ A + TV G GY Sbjct: 183 RHQADTRLVNVHVQRLRAKVERDAEHPEVVVTVRGVGY 220 >gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] Length = 228 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 12/228 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDIP 58 +ILLIED+ ++A EL N YV D+ G++G++ ++D IILD+ L + Sbjct: 3 KILLIEDEVSIA---ELQRDYLEINDYVVDIQHHGDEGLKQALHGDYDLIILDIMLPGMN 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GFE+ + +R + P+ +S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 60 GFEICKQIRAVN-NIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S +++ L+++ A+ V V G + T KE+ ++ N L+KE Sbjct: 119 YERLASNQPTNNMMSIHGLTIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQ 178 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +V + V I KLR+K+ ++ETVWG GY L Sbjct: 179 LYERNWGYESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRL 226 >gi|168205523|ref|ZP_02631528.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170662911|gb|EDT15594.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] Length = 227 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++++ + + + ENF V + GE+G+ + D ILD+ L + GF Sbjct: 1 MKILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR + + IL+ DK+ GLQ GADDY+ KPFN E+ R++A++RR Sbjct: 61 EVCQKLRESFPRMGIIILTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120 Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + I + ++L ++++ + I +T KE+ ++++ T++ LN Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180 Query: 177 HLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ D +P KI+DV I +LR K+ + YIETVWG GY Sbjct: 181 LVWGIDFFGDP--KIVDVNIRRLRSKIEENSSKPKYIETVWGTGY 223 >gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 242 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 12/238 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ A+ +E LK +F+V G D + + + +D ++LDL L ++ G E Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL+ +R+ + TPV +L+ + DKV GL+ GADDY+ KPF+ E++ARI A++RR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 119 SRGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 S +Q + TG +++ V V + LT KE+++++ L +N L Sbjct: 123 SEPSSQQNAAPVKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++ L ++ + +++D+ I LR+K+ + Y++T+ G GY D Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEFSTGGDD 240 >gi|220926004|ref|YP_002501306.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950611|gb|ACL61003.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 222 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +A + +L + V + GE+ ++D +LDLGL + G Sbjct: 1 MRILLVEDDPRVARKVAAVLTEAGYAVDHVEDGEEAWFRGDTEDYDLAVLDLGLPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ R A PV IL+ + ++V G+ +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 AVLKRWRAAGRDLPVLILTARGAWAERVEGIDAGADDYLTKPFAMEELLARVRALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + ++G + ++ V ++L+ EY+ + L + + HLY Sbjct: 121 GRAVPVFISGPVVLDTRKMRVTADDVPLNLSPLEYRCLSYLMHHAGRVIPPTELMEHLYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + ++V + +LR+KL G + IET G GY++ E A Sbjct: 181 HDHDRDPNALEVLVGRLRRKL-----GVDLIETRRGFGYLVPEPAP 221 >gi|82778365|ref|YP_404714.1| DNA-binding transcriptional regulator QseB [Shigella dysenteriae Sd197] gi|309785329|ref|ZP_07679960.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617] gi|81242513|gb|ABB63223.1| putative 2-component transcriptional regulator [Shigella dysenteriae Sd197] gi|308926449|gb|EFP71925.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617] Length = 219 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++E++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQTSNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris PB013-T2-3] gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris PB013-T2-3] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 130/225 (57%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + G++ + +L + + +ILDL + ++ G Sbjct: 1 MKILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS ++ DK++GL SGADDY++KPFN E++AR+++++RR+ Sbjct: 61 MEVIKQVR-KDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +G + ++ G L +N D+ V+ ++G I LT E+ ++ LL+ N + + Sbjct: 120 QGEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224 >gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus subtilis subsp. spizizenii str. W23] Length = 228 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ +A ++L L+ E +NV + G +G+ + ++LD+ L + G EV Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYNVTIKYNGTEGLNAAAEGRYSLVLLDVMLPGLSGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR TPV +L+ SI DKV GL GA+DY++KPF EEL+ARIR +R++ Sbjct: 66 LRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRVALRQNGTK 125 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + DL VN + V + LT +E+ ++ + LT+E LN ++ Sbjct: 126 TEDIDTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILNSVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++DV+I +RKKL + K I TV G GY ++ Sbjct: 186 GFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTVRGVGYAIK 227 >gi|262197840|ref|YP_003269049.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081187|gb|ACY17156.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 235 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ + + L+ E F V G +G++ + D ++LDL L D G+ Sbjct: 12 KILIVEDEPDIVRGLRDALQFEGFQVEARGTGMEGLDAAAEWGPDCVLLDLMLPDENGYR 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V LR P+ IL+ S DKVRGL++GADDY++KPF+ EL+ARI AI RR Sbjct: 72 VCETLRSRDPVVPIIILTAKSQDVDKVRGLEAGADDYVTKPFSVAELIARINAIFRRQVR 131 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H ++ + G +N T+ LT E ++++LL R + +T++ L + Sbjct: 132 LASHEEAFDI-GPWRINTRKHTMNQGRSTKRLTFYELEVLKLLRERAESPVTRDEILEKI 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + P + +D FI KLR+KL +I TV+G GY L Sbjct: 191 WGVTPSPANRTVDNFIVKLRRKLEEDHKRPRHILTVYGHGYKL 233 >gi|167469914|ref|ZP_02334618.1| DNA-binding heavy metal response regulator [Yersinia pestis FV-1] Length = 178 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/176 (40%), Positives = 108/176 (61%), Gaps = 3/176 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ + I L F V V G DG+ L Y++D I+LD+ L + G+ Sbjct: 1 MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL LR +K TPV +LS S++++V+GL+ GADDY+ KPF+ ELVARI+A++RR Sbjct: 61 SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S G S + DL ++L A+ V G R+ LT KE+ ++ LL+ + L+K M Sbjct: 120 SDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMI 175 >gi|298252102|ref|ZP_06975905.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297546694|gb|EFH80562.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + + +L E ++V V G+D ++ D I+LD+ L + G EV Sbjct: 5 LLVVDDDPRITDLLRRILAYEGYSVAVATSGDDALKRTLERAPDLIVLDVMLPGLNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ LRVA + P+ +L+ ++ D+V+G + GADDY+ KPF EELVARI+A++RR++ Sbjct: 65 VQRLRVAGDNVPILLLTARDTVADRVKGFEIGADDYVVKPFAPEELVARIKALLRRNQVE 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ D+ ++ + I L+ EY+++ L R LT+++ ++ ++ Sbjct: 125 RHEILHYADVQLDTGTRVAHRGPREIELSPTEYELLALFLRRPRQVLTRDVIMDRVWGLD 184 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E +++V+I LR L A G I T+ G GYV RE Sbjct: 185 FEGSSNVLEVYIGYLRNMLE-ADGEARLIHTIRGIGYVFRE 224 >gi|257092597|ref|YP_003166238.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045121|gb|ACV34309.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 220 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 116/222 (52%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L I LK ++ V +V D GE + + A +LDLGL G Sbjct: 1 MRILLVEDDSLLGDGIRAGLKLADYAVDWVRD-GEAARLALLDHAYQACVLDLGLPKRDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ LR PV IL+ S DK+ GL +GADDY++KPF+ EL AR+RA++RR+ Sbjct: 60 LSVLKDLRARGNHLPVLILTARDSSADKIAGLDAGADDYLTKPFDLPELQARLRALIRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A + + + +K V G I L+ +EY ++ L K T+ LY Sbjct: 120 GGAATPTLEHAGVVLEPASKRVLRDGQPIALSAREYALLHDLLSHKTHIRTRSQLEESLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V++ LRKKL G ++I TV G GY L Sbjct: 180 AWGEETGSNTVEVYVHHLRKKL-----GTDFIRTVRGLGYQL 216 >gi|237811046|ref|YP_002895497.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|237502846|gb|ACQ95164.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] Length = 269 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 11/226 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP---G 59 ILL+EDD+ +A + LK++ V D +DG +A L L +P G Sbjct: 52 ILLVEDDRMIAEGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKRDG 108 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VLR LR ++ PV IL+ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 109 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQ 168 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++S+I G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 169 SGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 228 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G + I V G GY++ + A Sbjct: 229 GWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 269 >gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 242 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 127/238 (53%), Gaps = 12/238 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ A+ +E LK +F+V G D + + + +D ++LDL L ++ G E Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R+ + TPV +L+ + DKV GL+ GADDY+ KPF+ E++ARI A++RR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 122 HAQS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 S + TG +++ V V + LT KE+++++ L +N L Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++ L ++ + +++D+ I LR+K+ + Y++T+ G GY D Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEFSTGGDD 240 >gi|110633256|ref|YP_673464.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284240|gb|ABG62299.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 224 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ A ++ V GE G L +D ++D L G Sbjct: 1 MKILIIEDDREAASFLKKAFSEAGHIADVASDGEAGFALADGGNYDVFVIDRMLPRRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR +TP ILS + ++D+V GL++G DDY++KP+ EL+AR+ + RR+ Sbjct: 61 SVIAGLRANGNTTPALILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLKRRAG 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++L GDL ++ + TV G I L +E++++E L +T+ M L +++ Sbjct: 121 TRDVETLYRAGDLELDRLSHTVRRGGQEITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ +IDV + +LR K+ K + TV G GY++R + Sbjct: 181 DYHFDPQTNVIDVHVSRLRGKIERGF-DKPILHTVRGAGYMIRAD 224 >gi|331082776|ref|ZP_08331899.1| hypothetical protein HMPREF0992_00823 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400395|gb|EGG80037.1| hypothetical protein HMPREF0992_00823 [Lachnospiraceae bacterium 6_1_63FAA] Length = 239 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD + + I L+ E + + G I L D I++DLGL DI G EV Sbjct: 9 VLVVEDDVPIRNLITTTLEMEKYKFDTAENGNQAIMLAAANNPDIILMDLGLPDIDGIEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 +R +R ++ P+ ++S S +DKV L GADDY++KPF+ EL AR+RA RR + Sbjct: 69 IRKIRTWSVA-PIIVISARSDEKDKVSALDVGADDYLTKPFSVTELSARLRATTRRIQYI 127 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 HA +S+ G+L ++ A V+V G +HL EY ++ LL+ LT L Sbjct: 128 MHADNTNESVFKNGNLEIDYSAGVVKVSGEEVHLMPLEYSLLCLLAQNIGKVLTYRFILE 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V++ LRKKL YI+T G GY Sbjct: 188 KVWQNGITSDISSLRVYMASLRKKLEKDKEHSAYIQTHIGVGY 230 >gi|300772484|ref|ZP_07082354.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300760787|gb|EFK57613.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 232 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 120/227 (52%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL+EDD A+ I L NFN+ V G G+E+ +D IILD+ L + G Sbjct: 1 MEILLVEDDSAVVSLIRRGLSELNFNISVALNGLTGLEMAVSGNYDLIILDVMLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116 V R +R K + P+ ILS + ED V G +S ADDY++KPFN EEL AR+ R I Sbjct: 61 RVCRNIRQQKKNVPILILSALDQPEDIVDGFKSDADDYLTKPFNMEELKARVSRFSRKIG 120 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + SR + + DL ++ +K + Q I LT E++++E L + +++ L Sbjct: 121 QTSRVEENNNLEFADLILDYSSKIAKRQDVDIALTATEFRLLEFLMKNQKRVVSRIDILE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++DV+I LR K+ + K + TV G GYVLRE Sbjct: 181 SVWGMDFNLSTNVVDVYINYLRNKI-DKGYNKKLLHTVVGMGYVLRE 226 >gi|74318372|ref|YP_316112.1| two component transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74057867|gb|AAZ98307.1| Two component Transcriptional regulator, Winged helix family [Thiobacillus denitrificans ATCC 25259] Length = 235 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I + +DD+ + + L S+ + V + L D ++LD + G V Sbjct: 6 IYVTDDDRGIRELVAEYLTSQGYAVETAEDAAALDRLLAARLPDLVVLDWMMPGEDGLSV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR P+ +LS D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ARRLRARPGFPPIIMLSAKGEDIDRIIGLEVGADDYLPKPFNPRELLARIRAVLRRQPTA 125 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+ L+ G SVNLDA+ + G I LTG EY+++E+ N L+++ ++ Sbjct: 126 AEPTESARLVRFGPFSVNLDARMLSRDGVEIPLTGGEYELLEIFVRHANRALSRDWLMDQ 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L +P + IDV + +LRKK+ + YI T G+GY+ K Sbjct: 186 LRGFERDPFDRSIDVRVNRLRKKIEDDPTNPAYIRTQRGQGYLFVPQGK 234 >gi|94312862|ref|YP_586071.1| DNA-binding response regulator [Cupriavidus metallidurans CH34] gi|93356714|gb|ABF10802.1| DNA-binding response regulator in two-component regulatory system [Cupriavidus metallidurans CH34] Length = 223 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57 MR+LL+ED LA L++KS + +V D DG + + +D I+LDL L + Sbjct: 1 MRLLLVEDHPDLAA---LVIKSLGDSGFVIDHAVDGEAALLMIATASYDLILLDLSLGKV 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +VLR++R ++TPV IL+ S I D++ GL GADDYI+KPF+ EL ARI+A +R Sbjct: 58 DGLDVLRSIRTQGVTTPVLILTARSEIADRILGLDLGADDYIAKPFDLGELEARIKAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R +G Q + G LS + ++ +G + L+ +E ++E L LR T+++ Sbjct: 118 RRQG-GQPVTTYGGLSFDSVERSFYCEGTALTLSRRELAVLEALFLRAGRVATRDVLFQC 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ DE + I++++ ++RKKL + I V G GY+L + Sbjct: 177 VFSIDDEVNPETIELYVSRVRKKLKPSG---LVITAVRGVGYLLEQR 220 >gi|320540374|ref|ZP_08040024.1| putative DNA-binding response regulator in two-component regulatory system with PhoQ [Serratia symbiotica str. Tucson] gi|320029305|gb|EFW11334.1| putative DNA-binding response regulator in two-component regulatory system with PhoQ [Serratia symbiotica str. Tucson] Length = 223 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MRIL++ED+ L H + + ++ V D ED E F + D I+DL L Sbjct: 1 MRILVVEDNGLLRHHLSVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIVDLVLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++ P+ L+ S +DKV L++GADDY++KPF+ EE++ARI+A++R Sbjct: 58 DGLSLIRRWRAHQMKLPILGLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +IV ++L + + V I LT EY +IE L ++K+ + Sbjct: 118 RNSGLASQIIVLPPFQIDLSRRELSVNEQNIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A ++ I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKV-QAEYPQDVITTVRGQGY 218 >gi|313906333|ref|ZP_07839675.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313468839|gb|EFR64199.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 243 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 128/235 (54%), Gaps = 16/235 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA +EL L E + V ++ G + +EL FD I+LD+ L + G EV Sbjct: 5 ILIVEDESKLARYVELELLHEGYEVTKSENGREALELALSNHFDLILLDIMLPGLNGLEV 64 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 LR L + TPV +L+ ++ DKV GL +GA DYI+KPF EEL+ARIR ++ Sbjct: 65 LRRLNKEQEMNPTPVILLTARDAVMDKVSGLDAGAVDYITKPFAIEELLARIRVALKLYE 124 Query: 118 -RSRGHAQSLI-------VTGDLSVNLDAK--TVEVQGHRIHLTGKEYQMIELLSLRKNT 167 R+RG + + V + LD K TV GH + LT +E+ M+E L + Sbjct: 125 ARNRGASSGAVEKEKEEGVYTWNKLRLDEKRHTVHFDGHEVTLTNREFLMLETLLANMDI 184 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+++ L + E +IDV++ LR K+ A G K I+TV G GYV++ Sbjct: 185 VLSRDTLLEKVCGYDYIGETNVIDVYVRYLRSKIDEAYGVK-MIQTVRGVGYVIK 238 >gi|308188702|ref|YP_003932833.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1] gi|308059212|gb|ADO11384.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1] Length = 223 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 112/221 (50%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + I+ L F+V GE G + +DA+ILDL L + G Sbjct: 1 MRILLIEDDRLIGDGIKAGLSKLGFSVDWFTSGESGCNALEAAPWDAVILDLSLPERDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ +++ +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRQWRQQGNDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G++ + + +V I L +E ++EL LT+ LY Sbjct: 121 GQLQPELRHGNVVLIPGSHSVMRDDEAIELKSRELALLELFMRNPGRVLTRSQLEEKLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V I LRKKL G +I T+ G GY L Sbjct: 181 WDADVSSNAVEVHIHHLRKKL-----GSGFIRTLHGVGYTL 216 >gi|306819750|ref|ZP_07453409.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552215|gb|EFM40147.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 240 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L++ED+K L SI L+ + V GE+ E+C +D I+LD+ L + GF Sbjct: 18 VKLLVVEDEKELLDSIAEGLRLSGYAVDTASDGEEAQEMCYVENYDLIVLDINLPKMDGF 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R V +L+ + I+D+V+GL GA+DY+ KPF+ +EL ARIR+++RR + Sbjct: 78 TVLQKIREEDKLVNVIMLTARTQIKDRVKGLDLGANDYLIKPFHFDELEARIRSLLRRKQ 137 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S I L + KT V R+ LT KE ++E L L + + +E L H+++ Sbjct: 138 VQEDSTISAFGLIFDTKTKTASVNDERVKLTVKETGILEYLLLNQGRYVLQEELLEHVWE 197 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + V + LR KL +A GKN I G+GY++ Sbjct: 198 SDMNEFSNTVRVHVYGLRNKLKDAL-GKNIIRNEIGKGYII 237 >gi|154245024|ref|YP_001415982.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159109|gb|ABS66325.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 220 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 115/225 (51%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L +++ L V D FDA++LD+ L D G Sbjct: 1 MRILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR +TPV +L+ + D+VRGL GADDY+ KPF+ +EL AR+RAI RR Sbjct: 61 DVLAGLRARGNATPVLLLTALDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARRGH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L+ G L ++ + G I L+ +E+ ++ L R ++ LY Sbjct: 121 GRAGPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSALMERPGVIRSRMEIEERLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++E E ++V I LR K+ G+ IETV G GY +R A Sbjct: 181 WQEEVESNAVEVHIHNLRAKV-----GRETIETVRGLGYRVRGPA 220 >gi|312134258|ref|YP_004001596.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311774309|gb|ADQ03796.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 217 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 130/219 (59%), Gaps = 8/219 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ L I+L L+ E F V G + IE + + +ILD+ L G+ Sbjct: 1 MKILLIEDEEKLRKIIKLYLEKEGFEVKEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R K TPV +L+ +DK+ G + GADDY+ KP + +E+VAR++AI++RS+ Sbjct: 61 SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRSK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I L ++ A+ V V+G +++LT KEY+++ L R+N L++E LN ++ Sbjct: 120 KSSSDEI----LFIDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG 175 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ +D I LR+KL ++YI+TV G GY Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGEL---RDYIKTVRGYGY 211 >gi|269128240|ref|YP_003301610.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313198|gb|ACY99572.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 225 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E F G+ +E + D ++LDL L G + Sbjct: 4 RVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETRPDLVLLDLMLPGADGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL+SGADDYI KPF +ELVAR+RA +RR+ Sbjct: 64 VCRQIR-AESGVPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARMRARLRRTEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GD+++++ +V+ I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPETLQIGDITIDVAGHSVKRGDKTIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGY 220 >gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 256 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L I G Sbjct: 25 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 85 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ+ +V GD+ + + V V+G + KE++++E L K +T+ Sbjct: 144 TAQASGTVDDDIPLVCGDIVMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ Y+ TV G GY Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 249 >gi|218294955|ref|ZP_03495809.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244863|gb|EED11387.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 225 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 122/230 (53%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD +A +EL LK F V G +G+ + D ++LDLGL D+ G E Sbjct: 3 RILLIEDDPEVARLLELELKEAGFAVEWAKSGVEGLIRHREKRPDLVVLDLGLPDLDGGE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A TP+ +L+ ++E KV L GADDY+ KPF+ EL+ARI+ +R G Sbjct: 63 VARRIR-ATDDTPILVLTAQDAVERKVSLLSEGADDYLVKPFHPAELLARIQVQLRHREG 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180 ++ G+L++ + V + + L+ KE+ ++ LL R +++ ++ Sbjct: 122 --SEVLSVGELTLYPKRRQVFFREQEVRLSPKEFDLLALLMGRPGRVFSRQEIEEKVWGR 179 Query: 181 --GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 GRD ++DV + LR KL AG Y+ TV G GY LR + E Sbjct: 180 PLGRDS---NVLDVHVANLRAKLRE-AGAYGYLRTVRGLGYALRPRGEGE 225 >gi|163790188|ref|ZP_02184621.1| DNA-binding response regulator [Carnobacterium sp. AT7] gi|159874463|gb|EDP68534.1| DNA-binding response regulator [Carnobacterium sp. AT7] Length = 230 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 10/228 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIPGF 60 IL+IED+K LA +EL LK E + V G G+E + + +D I+LDL L ++ G Sbjct: 4 ILIIEDEKNLARFVELELKHEGYATEVRYNGRTGLEAAVAEDAHWDVILLDLMLPELNGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R + P+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA+ RR Sbjct: 64 DVCRRIRQVS-NVPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALFRRIE 122 Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + Q+ + DL+V + + V I LT +EY+++ L N L +++ Sbjct: 123 IESEQNITKQTTVTYRDLTVEKENRVVRRGEEVIELTKREYELLLELMENVNVVLARDVL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LN ++ E E ++DV+I LR K+ + +YI+TV G GYV+R Sbjct: 183 LNKVWGYETEVETNVVDVYIRYLRNKI-DVPNVDSYIQTVRGTGYVMR 229 >gi|78063277|ref|YP_373185.1| two component heavy metal response transcriptional regulator [Burkholderia sp. 383] gi|77971162|gb|ABB12541.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 227 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRIL++ED+ + L YV D EDGI + E+D ++LD+ L Sbjct: 1 MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQ 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ +L+ LR +K STPV L+ + D+V+GL+ GADDY++KPF+ EL ARI++I+R Sbjct: 58 DGWTLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + + DL ++L + QG I LT KE+ ++ LL R+ L + + Sbjct: 117 RGQPRDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++D + ++D I +LR K+ +A K I TV G GYVL T Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKIDDAYDPK-LIHTVRGMGYVLEARGSSTT 227 >gi|83941435|ref|ZP_00953897.1| two-component response regulator [Sulfitobacter sp. EE-36] gi|83847255|gb|EAP85130.1| two-component response regulator [Sulfitobacter sp. EE-36] Length = 223 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD I L+ E V + G +G+ +D +I+D L +I G Sbjct: 1 MKLLVVEDDATTGTYIARGLREEGHTVDLVAEGREGLIQATSGAYDVLIVDRMLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A TPV L+ M S++D++ GL +G DDY+ KPF EL AR+ A+ RR + Sbjct: 61 TLVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQ 120 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q ++ GDL + L + V G I L +E+ ++E L RK T+ M L ++ Sbjct: 121 AMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P +++ I +LR K+ + I+TV G GY Sbjct: 181 DISFDPMTNVVETHISRLRAKVDKPF-DRELIQTVRGAGY 219 >gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 224 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD + I+ L E ++V G + ++ I+LD+ L G Sbjct: 1 MKVLLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREALEGDYHLILLDIMLPKFDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R K PV +++ S +EDKV GL +GADDYI+KPF+ +E++ARI A++RR + Sbjct: 61 KVLSRIREVK-DIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVLRRYK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL +N + V +G I LT +E++++++L+ L++E ++ Sbjct: 120 KEEEDIIKVGDLLINPRSYEVYYRGRSIKLTSREFKLLKVLAEHAGEVLSRERLFAKVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++DV+I LR KL + I TV G GY+L+ Sbjct: 180 SSYGENSNVVDVYIKNLRNKLEDRP--PKLIHTVRGMGYMLK 219 >gi|256376753|ref|YP_003100413.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255921056|gb|ACU36567.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ A+A ++ L+ E + V G ++L + D +ILD+ + + G Sbjct: 1 MHILVVDDEVAVAEAVTRTLRFEGYEVTTAHDGAQALDLVRSLRPDGVILDVTMPVLGGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + RALR + +TPV +L+ + + D+V GL +GADDY++KPF +EL+AR+RA+VRR Sbjct: 61 DACRALRASGDTTPVLMLTARAEVSDRVAGLDAGADDYLAKPFALQELLARVRALVRRG- 119 Query: 121 GHAQSLIVTGDLSVN---LDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+A + + L LDA T EV +G R + LT E+ ++E L++E Sbjct: 120 GYAGTAARSEALRFADLLLDAGTREVRRGDRQVALTRTEFSILETFLRNPRLVLSREAMF 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +DV++ LR+KL G I TV G GYVLRE+ Sbjct: 180 RTVWGHDFGAGSNGLDVYVGYLRRKLEQ-DGEPRLIHTVRGVGYVLRED 227 >gi|268590467|ref|ZP_06124688.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131] gi|291314147|gb|EFE54600.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131] Length = 222 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILL+ED L+ ++ L S F V DL DG +L + ++ ++LD+ L + Sbjct: 1 MRILLVEDHDELSLWLQKALSSSGFAV---DLASDGAIADQLLQTERYELVVLDVSLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL +R TPV +L+ S + D+V+GL +GADDY++KPF+ EL AR+RA++R Sbjct: 58 SGLEVLAQMRKRHQETPVLLLTANSDVADRVQGLNAGADDYLTKPFDIAELEARLRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G G LS + D + + + LT +EY ++ L R+ ++K Sbjct: 118 RSQGQVNESQQFGLLSYHEDGYFL-LGEEPLGLTPREYAVLNTLFHRRGRPVSKMQLFEQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ DE ++ I++++ ++RKKL AG I T+ G GY L + Sbjct: 177 VFSLSDEANLQSIELYVHRVRKKL---AGSDVNINTLRGLGYRLEQ 219 >gi|187933492|ref|YP_001885577.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund 17B] gi|187721645|gb|ACD22866.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund 17B] Length = 224 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDDK LA+ ++L L+ F+ V + DG E E+D I+LDL L D G Sbjct: 1 MRILIIEDDKILANIVKLGLEEFGFSSDVANTAGDGEEKIFINEYDTILLDLNLPDKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R + I+TP+ I++ ++++ GL G+DDYI KPF+ EL ARI A++RR Sbjct: 61 EVLKDIRESGITTPIIIITARIEVKERAIGLDLGSDDYIVKPFDLIELRARINAVIRRFY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G+L +N + V + L+ KE+ ++E ++ ++ E H+YD Sbjct: 121 GRTNAEIKIGNLLINPKTRVVTYSLKPVKLSAKEFDVLEYIANNHPHVVSSESIAEHVYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++ V I L+KKL A G+ + T+ G+GY + E Sbjct: 181 EFFDPFSSVLRVHISNLKKKLK-LASGQELLLTLRGKGYRIWE 222 >gi|15894117|ref|NP_347466.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023722|gb|AAK78806.1|AE007599_2 Response regulator [Clostridium acetobutylicum ATCC 824] gi|325508244|gb|ADZ19880.1| Response regulator [Clostridium acetobutylicum EA 2018] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++DD + + + + L +E + + G + I + +ILD+ L DI G Sbjct: 2 LKILVVDDDIEILNLVSIYLSNEGYEIIKATNGCEAISKINNEKPKLVILDVMLPDIDGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R K++ P+ ILS DK++GL +GADDYI+KPFN+ E + R++ ++RR Sbjct: 62 EVCRKIR-EKLNVPIIILSAKVQNSDKIKGLLTGADDYITKPFNQLEFIVRVKTLLRRTY 120 Query: 119 ---SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +RG+ L IV G L++ TV + + I LT E+++++LL++ K + E Sbjct: 121 LFDTRGNKDDLDDIVLGTLTIKKSTHTVLINNNEIILTATEFEILKLLAINKGRIFSAEE 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I LR K+ G+ I TVWG GY Sbjct: 181 IFETVWKEKYFQSNNTVMVHISNLRDKIERKLNGEKLIHTVWGVGY 226 >gi|83854912|ref|ZP_00948442.1| two-component response regulator [Sulfitobacter sp. NAS-14.1] gi|83842755|gb|EAP81922.1| two-component response regulator [Sulfitobacter sp. NAS-14.1] Length = 223 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD I L+ E V + G +G+ +D +I+D L +I G Sbjct: 1 MKLLVVEDDATTGTYIARGLREEGHTVDLVAEGREGLIQATSGAYDVLIVDRMLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A TPV L+ M S++D++ GL +G DDY+ KPF EL AR+ A+ RR + Sbjct: 61 TMVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQ 120 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q ++ GDL + L + V G I L +E+ ++E L RK T+ M L ++ Sbjct: 121 AMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P +++ I +LR K+ + I+TV G GY Sbjct: 181 DISFDPMTNVVETHISRLRAKVDKPF-DRELIQTVRGAGY 219 >gi|115358458|ref|YP_775596.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria AMMD] gi|170703849|ref|ZP_02894543.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171317815|ref|ZP_02906995.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172063215|ref|YP_001810866.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115283746|gb|ABI89262.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] gi|170131242|gb|EDS99875.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171097039|gb|EDT41896.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171995732|gb|ACB66650.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 231 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + ++ L E + V GEDG +++D ++LD+ L + GF Sbjct: 1 MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAIEFDYDVVVLDVMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ ++D+VRGL+ GADDY++KPF+ EL+ R+RA+ RR+R Sbjct: 61 GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT +E+Q++ +L+ R L+K ++D Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++ I +LR KL K + T+ G GYVL Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFAEK-LLHTIRGMGYVL 219 >gi|301067694|ref|YP_003789717.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|300440101|gb|ADK19867.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] Length = 233 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +LL+ED+ ALA S+ + EN +V G + + L K E + IILD L + GF Sbjct: 5 LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R + P+ +L+ I DKV GL GADDYI+KPF EELVAR+ +R +R Sbjct: 65 SVLRKIRQSS-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNR 123 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ DL V+ D K V+ + LT +EY+++ L ++ +++ L+ + Sbjct: 124 QAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + I+DV+I LR K+ + +G K I TV G GY+L N Sbjct: 184 WGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229 >gi|291523295|emb|CBK81588.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 6/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD ++ + L +ENF V G+ E + ++LDL + I G Sbjct: 1 MKILLIEDDIEISEMLCSYLIAENFEVVCATDGQKACEAFDIGFYSIVLLDLMIPKITGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ +R K + P+ I+S S DK GL GADDYI+KPF+ E++ARI+A +RR+ Sbjct: 61 NVMKYIR-QKSTVPIIIISAKDSDSDKTLGLGLGADDYITKPFSITEVMARIKANIRRNT 119 Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +A Q+ +V G L +NL+ TV G I LT KE+ ++ LL TK Sbjct: 120 EYAAVQPEQTKLVWGPLVMNLENHTVTKSGEIIELTAKEFDILRLLLENPQRVYTKAQIY 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ + ++V I +LR K+ + + TVWG GY L E Sbjct: 180 SLIWNDAYMGDENAVNVHISRLRTKIEDDPRKPQVVITVWGIGYKLGEQ 228 >gi|323527540|ref|YP_004229693.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384542|gb|ADX56633.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 247 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 116/228 (50%), Gaps = 12/228 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59 IL+++DD + + L+ F V E G+ L + + + ++LD+ + ++ G Sbjct: 5 ILVVDDDPVVRELVSQYLEGRGFKVATL---EHGMALQRKLQDERPALVVLDIMMPELDG 61 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 LRALRVA PV +L+ + D+V GL+ GADDY+ KPF ELVARIR ++RR Sbjct: 62 ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S ++ G VN A+ + G RI L E+ M+++ T LT+ Sbjct: 122 GSVAPSAPEQRAPYRFGRFEVNFPARELRRDGERITLRSSEFAMLKVFVTHAMTVLTRAQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L L+ D + +DV I +LR+ + Y++TVWGRGYV Sbjct: 182 LLEKLHGNSDTHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229 >gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family [Hirschia baltica ATCC 49814] gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family [Hirschia baltica ATCC 49814] Length = 248 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 4/226 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L++ED++AL ++ L+SE + V V GE + + + + D ++LD L + G EV Sbjct: 24 LIVEDEEALVQLLQYNLQSEGYEVGVAMDGEMALLMVEERQPDIVLLDWMLPKLSGIEVC 83 Query: 64 RALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R LR + P+ +L+ + D++RGL +GADDYI KPF+ EL ARIRA++RR R Sbjct: 84 RRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMRRIRP 143 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +V GDL V+ A V G ++HL E+++++ L ++E L+ ++ Sbjct: 144 GLTEDKVVVGDLEVDRTAHKVARAGQQVHLGPTEFRLLDYLIQHPGRVFSRERLLDAVWG 203 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +DV + +LRK L G + I TV GY L K Sbjct: 204 SDIYVEARTVDVHVGRLRKAL-KMEGLVDPIRTVRSAGYALNAGEK 248 >gi|149276735|ref|ZP_01882878.1| two-component response regulator [Pedobacter sp. BAL39] gi|149232404|gb|EDM37780.1| two-component response regulator [Pedobacter sp. BAL39] Length = 223 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+++L SI L +E + ++GIE Y++D I+LDLGL D G Sbjct: 1 MKLLIIEDEESLRRSILQYLTAEGNICDIATSFDEGIEKISLYDYDCILLDLGLPDGEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR L+ K S V I+S SI+ ++ GL GADDY+ KPF+ EL ARI AIVRR Sbjct: 61 ELLRHLKKLKKSDGVLIISARDSIDQRIEGLSLGADDYLVKPFHLSELYARITAIVRRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 + +V ++ ++ AK V++ G I+LT KE+ ++ K+ ++K H++ Sbjct: 121 FNGNDQVVFNEIEIDTTAKEVKINGILINLTKKEFDILLYFVTNKSKVVSKSAAAVHIWG 180 Query: 180 -DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D I I +RKKL++ AG K+Y ++V+G GY Sbjct: 181 EDADMADSFDFIYTHIKNIRKKLTD-AGCKDYFQSVYGVGY 220 >gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni ACN14a] gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR, regulation of Pi uptake (OmpR family) [Frankia alni ACN14a] Length = 226 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E F V V G + D ++LDL L + G E Sbjct: 3 RLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR + S P+ +L+ S DKV GL+ GADDY++KPF+ ELVARIRA++RR Sbjct: 63 VCRTLR-TRSSVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A++ + G + ++++ V V G + L KE++++E+ LT+ ++ + Sbjct: 122 TEEVAEATLEAGPVRMDVERHVVTVDGSMVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRTKIEREPGNPRHLVTVRGLGY 222 >gi|302878903|ref|YP_003847467.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] gi|302581692|gb|ADL55703.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] Length = 221 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD LA+ + L+ NF V G+ FD +ILDLGL D+ G Sbjct: 1 MHLLLVEDDPVLANGLMHSLQLANFTVTHEANGQRADHWLTVKCFDLLILDLGLPDMDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR PV +L+ +S+ D+V GL GADDY++KPF +EL ARIRA++RRS+ Sbjct: 61 EILSRLRQRGNLIPVLLLTARNSLTDRVHGLDGGADDYLAKPFELQELEARIRALLRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G L ++++ + + + L +E ++++L + ++K++ L Sbjct: 121 PIGHARLEVGGLCLDMEGQCATLNQVPLDLLARELNLLKILMQQAGRVISKDVLCEQLSS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V++ +LRKK+ + G I T+ G GY+L Sbjct: 181 AGEEISSNAVEVYVHRLRKKIES---GGVSILTLRGLGYML 218 >gi|257790033|ref|YP_003180639.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317489476|ref|ZP_07947986.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325830166|ref|ZP_08163623.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1] gi|257473930|gb|ACV54250.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911405|gb|EFV33004.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325487633|gb|EGC90071.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1] Length = 236 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+KA+ ++ L+ EN+ V G++ +E + FD +ILDL L +PG Sbjct: 7 RILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR RA++RR Sbjct: 67 VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 ++ ++ G+L++++ V V I LT E++++ LS ++ E Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNNEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L + ++G + + ID + LR K+ + ++ TV G GY + K Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFEDPTK 233 >gi|225419918|ref|ZP_03762221.1| hypothetical protein CLOSTASPAR_06259 [Clostridium asparagiforme DSM 15981] gi|225041426|gb|EEG51672.1| hypothetical protein CLOSTASPAR_06259 [Clostridium asparagiforme DSM 15981] Length = 228 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+IEDDK + + +++ L+++ + + D G GI D I+LDLGL DI G Sbjct: 4 LTILVIEDDKTIQNFLKISLQTKGYKYILADNGLSGISYFYADNPDLILLDLGLPDIDGM 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVLR +R K P+ I+S +KV L GADD++ KPFN EEL+ARIR +R Sbjct: 64 EVLRQVR-QKSEVPIIIVSARGQEREKVSALDEGADDFVMKPFNAEELLARIRVALRHKG 122 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S L ++ + + + V G IHLT EY+M+ LL LT N + Sbjct: 123 TVKKQMSEFELDSLKIDFEKRKIFVHGQEIHLTPIEYKMMTLLVNNSGKVLTHHYIQNQV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + + VF+ +R+K+ + +I T G GY Sbjct: 183 WGYDTTDDYQSLRVFMANIRRKIEDDTANPRFILTEVGVGY 223 >gi|218895381|ref|YP_002443792.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228906040|ref|ZP_04069931.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228963358|ref|ZP_04124521.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|218542285|gb|ACK94679.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228796345|gb|EEM43790.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228853610|gb|EEM98376.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 233 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R AK P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLTRNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|218232740|ref|YP_002365097.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228962219|ref|ZP_04123659.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229042157|ref|ZP_04189914.1| Two-component response regulator [Bacillus cereus AH676] gi|229107932|ref|ZP_04237562.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229143055|ref|ZP_04271491.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229148658|ref|ZP_04276911.1| Two-component response regulator [Bacillus cereus m1550] gi|296501083|ref|YP_003662783.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|218160697|gb|ACK60689.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228634819|gb|EEK91395.1| Two-component response regulator [Bacillus cereus m1550] gi|228640420|gb|EEK96814.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228675530|gb|EEL30744.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228727192|gb|EEL78392.1| Two-component response regulator [Bacillus cereus AH676] gi|228797467|gb|EEM44640.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322135|gb|ADH05063.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 233 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R AK P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|239988860|ref|ZP_04709524.1| putative two-component systen response regulator [Streptomyces roseosporus NRRL 11379] Length = 246 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 11/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + V G D + + + Y D I+LD+ + + G Sbjct: 10 RILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R +TP+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 70 AARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + ++ DL ++L + V R+ LT E+ ++E+ LT+ Sbjct: 130 ASAAAAGAEAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTR 189 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E L ++ EP +DV++ LR+K + A G + TV G GY LR E Sbjct: 190 EQILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRTGGGGE 245 >gi|148378608|ref|YP_001253149.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932965|ref|YP_001382995.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153934579|ref|YP_001386541.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|170761006|ref|YP_001785954.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226947859|ref|YP_002802950.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|148288092|emb|CAL82160.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152929009|gb|ABS34509.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152930493|gb|ABS35992.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|169407995|gb|ACA56406.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226841886|gb|ACO84552.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 227 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 128/227 (56%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L++ED+ ++ + L+++ + V L +D + F+ D ++LD+ L D GF Sbjct: 3 FKVLVVEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFHPDLVLLDINLPDESGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+ R + K P+ +L+ + I DKV GL+ GADDYI+KPFN +E++ R++ +RR Sbjct: 63 ELCRHIN-DKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVN 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + + + VNL+ + V + L +EY+++E +N ++E+ L Sbjct: 122 KYKEKSDKEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ E EV+ +DV + +LR KL + + I+TV+G GYV+R Sbjct: 182 NKVWGFDYEGEVRTVDVHVRRLRSKL-DKENATSIIDTVFGIGYVMR 227 >gi|256380199|ref|YP_003103859.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255924502|gb|ACU40013.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 226 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 11/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A S+ L++E F V V G G+ D ++LD+ L G E Sbjct: 4 RVLVVEDDPTIADSVAARLRAEGFEVLVAHDGPSGVGRALAEGPDLVVLDVMLPGFDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R ++ A+ + PV +L+ D + GL GADDY++KPF+ EL AR+ A++RR Sbjct: 64 VCRRVQ-AQRAVPVLMLTARGEETDLLVGLAVGADDYLTKPFSLRELAARVHALLRRVDR 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RG + IV GD+ V+L + V G +HLT E+Q++ L+ R ++E L+ Sbjct: 123 ERERGSRSNRIVLGDVEVDLGERRVLKGGSEVHLTPTEFQLLVHLAGRPRAVQSRERLLS 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +D + LR+KL G I TV GY L Sbjct: 183 EVWDWPEGTSTRTVDSHVKALRRKL-----GGGLIRTVHSVGYAL 222 >gi|227819484|ref|YP_002823455.1| response regulator [Sinorhizobium fredii NGR234] gi|227338483|gb|ACP22702.1| response regulator in two-component regulatory system with KdpE, regulation of potassium translocation [Sinorhizobium fredii NGR234] Length = 231 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D+ A+ + + L SE + V D I D I+LDLGL D+ G Sbjct: 6 VRILVVDDEPAIRKLLRVGLTSEGYAVLEAINARDAISQVAEKRPDLILLDLGLPDMAGH 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++L R + P+ ILS + V+ L+ GADDY++KPF +EL AR+R +R Sbjct: 66 DLLAKWRSDALELPIIILSSRTDETGIVKALELGADDYVTKPFGMKELAARMRVALRHRL 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + TGDLSV+L + V+V + L+ KEY ++ +L +T + LN + Sbjct: 126 QQQGERPIFKTGDLSVDLVKRIVKVADKEVKLSPKEYDILRILVQYAGRVITHQHLLNKI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +DG +V+ + V++ +LR+K+ YI T G GY LRE Sbjct: 186 WDG--STDVQYLRVYVRQLRQKIERTPEQPQYITTETGVGYRLRE 228 >gi|215445178|ref|ZP_03431930.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis T85] gi|289757111|ref|ZP_06516489.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|294995216|ref|ZP_06800907.1| transcriptional regulator kdpE [Mycobacterium tuberculosis 210] gi|289712675|gb|EFD76687.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|326904745|gb|EGE51678.1| transcriptional regulator kdpE [Mycobacterium tuberculosis W-148] Length = 226 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+ + ++ + L + V G + + D +ILDLGL D+ +V Sbjct: 4 VLVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPPDVVILDLGLPDMSSIDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR ++ PV +LS + DKV+ L +GADDY++KPF +E +AR+RA VRR+ Sbjct: 64 LGGLR-GWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122 Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A Q +I T +V+L K V G +HLT E+ M+E+L+ + + + L ++ Sbjct: 123 AELEQPVIETDSFTVDLAGKKVIKDGAEVHLTPTEWGMLEMLARNRGKLVGRGELLKEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + V++ +LR+KL + ++ T G GY Sbjct: 183 GPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGY 222 >gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51] gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD+ + + L L++E F + G +E + FD IILDL + + G+ Sbjct: 1 MRILVVDDDERIREIVRLYLEAEGFETDEAENGNIALEKVRNGTFDLIILDLMIPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR + P+ +L+ D++ G GADDYI KPF+ EL AR++A++RR Sbjct: 61 TVCKVLR-KETQIPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRRLD 119 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + LI ++N + + V+G + LT KE+ ++ +L+ T++ L+ + Sbjct: 120 GETSKEHLITFTGFTINQITREIMVEGKEVKLTTKEFDLLLVLAKNPGQIFTRDQLLDSV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +D + + +D I +LR K + G ++I+TV G GY N + Sbjct: 180 WDFDYCGDSRTVDTHINRLRSKFDSQVGFSDFIQTVRGVGYKFEYNGR 227 >gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1] gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD AL+ +E ++E +NV T G++ + L D IILD + G E Sbjct: 5 KLLLVEDDPALSELLEYRFQNEGYNVRCTGDGDEAMVLASEDVPDLIILDWMIEGTSGIE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR K + P+ +L+ + +D+VRGL++GADDY++KPF+ EL+AR+ A++RR Sbjct: 65 VCRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRRI 124 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A I GD+ ++ A V+ +G + L EY++++ ++ L+ + Sbjct: 125 RPALAGETIEVGDIKLDPVAHKVQRRGRALQLGPTEYRLLKFFMESPGRVFSRGQLLDGV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E++ +DV I +LRK + G K+ I TV GY L Sbjct: 185 WGTGSDIELRTVDVHIRRLRKAI-GLEGAKDPIRTVRSAGYAL 226 >gi|239630540|ref|ZP_04673571.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526823|gb|EEQ65824.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 233 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +LL+ED+ ALA S+ + EN +V G + + L K E + IILD L + GF Sbjct: 5 LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R + P+ +L+ I DKV GL GADDYI+KPF EELVAR+ +R +R Sbjct: 65 SVLRKIRQSN-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNR 123 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ DL V+ D K V+ + LT +EY+++ L ++ +++ L+ + Sbjct: 124 QAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + I+DV+I LR K+ + +G K I TV G GY+L N Sbjct: 184 WGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229 >gi|186471982|ref|YP_001859324.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184194314|gb|ACC72278.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 224 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + S+ L+ +++V +V D G G E+ ++LDLGL + G Sbjct: 1 MRVLLVEDDLQIGQSLMRALQDADYSVDWVRD-GNAGSAAIAAAEYTVVLLDLGLPGMGG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+L+ R A + PV IL+ +E +V+GL GADDY+ KPF+ EL+AR+RA++RR Sbjct: 60 IELLKTARGAGNTVPVLILTARDDLEARVQGLDVGADDYVLKPFDVPELMARMRAVLRRK 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+A S + L+++LD + + G L+ +E+ ++ R T L+++ + LY Sbjct: 120 AGYASSRLGDDALNLDLDKRMLCCNGVSSVLSAREFALMLAFLERPGTILSRDQLEDKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E +DV I +RKK G+ I V G G+ + Sbjct: 180 GWGKEVESNAVDVLIHSVRKKF-----GQAVIRNVRGLGWTV 216 >gi|121598313|ref|YP_991950.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|134279900|ref|ZP_01766612.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|217419846|ref|ZP_03451352.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|238562735|ref|ZP_00439964.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|242314238|ref|ZP_04813254.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|251767807|ref|ZP_04820262.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|121227123|gb|ABM49641.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|134249100|gb|EBA49182.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|217397150|gb|EEC37166.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|238522054|gb|EEP85501.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|242137477|gb|EES23879.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|243061672|gb|EES43858.1| DNA-binding response regulator [Burkholderia mallei PRL-20] Length = 283 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 11/226 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP---G 59 ILL+EDD+ +A + LK++ V D +DG +A L L +P G Sbjct: 66 ILLVEDDRMIAEGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKRDG 122 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VLR LR ++ PV IL+ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 123 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQ 182 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++S+I G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 183 SGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 242 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G + I V G GY++ + A Sbjct: 243 GWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 283 >gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD ALA +E + E ++V TD G++ + L D ++LD + G E Sbjct: 5 KLLLVEDDTALAELVEYRFRGEGYDVRTTDDGDEALLLAAEDTPDLVLLDWMIGGTSGIE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR K + P+ +L+ S +D++RGL+ GADDY++KPF+ EL+AR+ A++RR Sbjct: 65 VCRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPRELIARVGAVLRRV 124 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A I GDLS++ A V +G + + E+++++ ++ L+ + Sbjct: 125 RPALAGETITVGDLSLDPTAHRVSRRGQPMKVGPTEFRLLKHFMEHPGRVFSRGQLLDAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E++ +DV I +LR+ ++ G + + TV GY L Sbjct: 185 WGSGSDIELRTVDVHIRRLRQAIA-VPGAADPVRTVRSAGYAL 226 >gi|325498579|gb|EGC96438.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii ECD227] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + I+ L F+V G +G E +DA+ILDL L I G Sbjct: 11 MRILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLPGIDGR 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 71 DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G + ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 131 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V I LR+KL G +I TV G GY L E Sbjct: 191 WDEEVTSNAVEVHIHHLRRKL-----GSGFIRTVHGIGYTLGE 228 >gi|221640766|ref|YP_002527028.1| winged helix family two component transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221161547|gb|ACM02527.1| Two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] Length = 228 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L++E V +GI+ +ILDLGL D G E Sbjct: 6 RILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGIDRAALDAPTLVILDLGLPDGDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120 VLR +R PV +LS S KV L +GA DY++KPF E +ARIRA++R RS Sbjct: 66 VLRTVR-GWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S+I +L ++L A+ V V G + LT +E+ ++ LL+ + +T+ M L ++ Sbjct: 125 PAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + + + V+I +LR KL + A +I T G GY R+ Sbjct: 185 PAHEEDSQYLRVYIRQLRAKLGDDAADPLWIFTEPGIGYRFRDR 228 >gi|161502167|ref|YP_001569279.1| hypothetical protein SARI_00190 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863514|gb|ABX20137.1| hypothetical protein SARI_00190 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 224 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L F V G L + +LD+ + I G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR ++ PV +L+ S++ D+V+GL GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 EVVQRLRKRGLTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G+L + D +Q + LT +E ++ +L R+ ++++ ++ Sbjct: 121 GQVHEVQRLGELIFH-DEGYFLLQEQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + I+++I +LRKKL G I T+ G GYVL Sbjct: 180 LNDEVSPESIELYIHRLRKKLQ---GSDVRITTLRGLGYVL 217 >gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ ED+ +A +E+ L+ E + V G +EL + +D IILD+ L G E+ Sbjct: 5 ILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIMLPGFSGIEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSRG 121 LR +R TP+ +L+ SS+EDKV GL GA+DYI+KPF EEL+ARIRA +R +S G Sbjct: 65 LRRIRSKDKQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRIKSAG 124 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL +N + V I LT +E+ ++ L K L +E L Sbjct: 125 TEEPAVHDCLEVSDLKLNEKTREVSRGDKAIELTPREFDLLVYLMTNKRQVLNREQILEA 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + ++DV+I LRKK+ + I T+ G GYVL+E Sbjct: 185 VWGYDFLGDTNVVDVYIRYLRKKI-DMPERPALIHTIRGVGYVLKET 230 >gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550] gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550] Length = 237 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L ++ +ILDL + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S AQ +L G L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNNTAQEKTTLSFKG-LTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKT 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 182 QLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228 >gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51] gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 238 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 127/229 (55%), Gaps = 8/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD + + L+ E + V + + G ++L + D ++LD+ L ++ G Sbjct: 6 VKILLVEDDVIIQELVNYNLQREGYTVIIAEEGNSALQLLDKEKPDLVLLDVMLPELDGL 65 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV + +R + S P+ +LS + D+V GL+ GADDY++KPF+ EL+ARI+A +R Sbjct: 66 EVCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARLRE 125 Query: 119 SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ L + GDL + ++ V V+G + LTGKE+ ++ + R N ++E L Sbjct: 126 EKRNSTPLPTSLTWGDLEIWPESYMVTVKGEYVTLTGKEFDLLHIFMKRPNQVFSREYLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + +DV I LR KL + + IE+V G GY L N Sbjct: 186 QKVWGYTISGDTRTVDVHISNLRSKLKSISP---IIESVRGVGYRLAVN 231 >gi|50122964|ref|YP_052131.1| DNA-binding transcriptional regulator BasR [Pectobacterium atrosepticum SCRI1043] gi|49613490|emb|CAG76941.1| two-component response regulator [Pectobacterium atrosepticum SCRI1043] Length = 222 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDDK L + L L E + ++ L + +ILDLGL D G Sbjct: 1 MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALINSAHYSLVILDLGLPDDDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R PV IL+ + D+V GL GADDY++KPF EL AR+RA++RR++ Sbjct: 61 ALLSRWRKNNYQHPVLILTARDKVNDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I +++++L+ + V + + LT KE+ ++ L L+ + + +E+ +Y Sbjct: 121 GSSNSKIQVDNITLDLNNQQVLLDEKPVVLTPKEFAILSRLMLKAGSQVHRELLHQDIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+P ++V I LR+K+ GK+ I T+ G GY+L Sbjct: 181 WNDDPSSNSLEVHIHNLRQKI-----GKDRIRTLRGFGYLL 216 >gi|325262523|ref|ZP_08129260.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp. D5] gi|324032355|gb|EGB93633.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp. D5] Length = 230 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK + + + + LK E + YV ++ I L D I+LDLGL D G EV Sbjct: 7 ILIVEDDKYIVNFMSMTLKDEGYGYYVAKSVKEAISLFYANRPDMILLDLGLPDGEGLEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ +R STP+ ++S ++K++ L +GADDY++KPF EL+ARIR +R+ Sbjct: 67 VKNVRELS-STPIIVVSARQEEQEKIQALDAGADDYVTKPFYMGELMARIRVAMRKRERM 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + AQ + L+V+ ++V V IHLT EY+++ LL + LT L + Sbjct: 126 APESAQEMFRQDYLTVDYTKRSVLVDNEEIHLTPIEYKILTLLIANRGKVLTHNYILKEI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + E + VF+ LR+K+ +I T G GY +E Sbjct: 186 WGYGEGVEAGTLRVFMATLRRKIEKNPAEPRFIVTEVGVGYRFKE 230 >gi|319763422|ref|YP_004127359.1| heavy metal response regulator [Alicycliphilus denitrificans BC] gi|317117983|gb|ADV00472.1| heavy metal response regulator [Alicycliphilus denitrificans BC] Length = 227 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 128/225 (56%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 M+IL++ED+ + L YV DL G DG+ + +D +ILD+ L + Sbjct: 1 MKILIVEDEPKTGEYLRQGLSEAG---YVADLVPNGTDGLHMALHGAYDLVILDVMLPGL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I+R Sbjct: 58 NGWQVLQSLRERGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILR 117 Query: 118 R-SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R G+ +++ DL ++L + V G R+ LT KE+ ++ELL R L + + + Sbjct: 118 RGPAGNEGTMLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIAS 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +I+V + +LR K+ K I+TV G GYVL Sbjct: 178 QVWDMNFDSDTNVIEVAMRRLRMKIDEGHAVK-LIQTVRGMGYVL 221 >gi|253576700|ref|ZP_04854027.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843910|gb|EES71931.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 232 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 125/223 (56%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60 ++L++ED++++ I + LK F+V G + + +L + D +LD+ + I GF Sbjct: 3 KVLILEDEESIRSFIVINLKRNGFDVLEAADGNEALSKLQSVPDIDIALLDVMVPGIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R + L+ +DKV L GADD++SKPF+ EL+ARI++++RR Sbjct: 63 EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVN 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A+ +G +++L +K + G I LT E+ +I+ ++NT L++++ L+ Sbjct: 123 VYRESSAKVTFTSGPFTLDLISKQFKKNGRLIELTPTEFSLIQFFLEKENTPLSRDVLLD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 H++ + KI+DV I +LR+K+ +++TVWG GY Sbjct: 183 HVWGKEYMGDPKIVDVNIRRLRQKIETNPSEPAFLQTVWGHGY 225 >gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 230 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 124/234 (52%), Gaps = 12/234 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57 M+IL+ +D++A+ S+ +S FN Y L EDG +EL + + +ILD+ + + Sbjct: 1 MKILVADDEQAVRESLR---RSLTFNGYEVVLAEDGAQAVELIEKEQPTLVILDVMMPQM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R++ R Sbjct: 58 DGLEVCRTLRSTGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFR 117 Query: 118 RSRGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RS +Q+ + DL +N D + V G I LT E+ ++E L L++ Sbjct: 118 RSITESQAPEQPKELEFEDLVLNPDTRDVTRGGKPISLTRTEFALLEYLMRNPRKVLSRS 177 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ ++V+I LRKK + A G I TV G GYVLRE A Sbjct: 178 DILEEVWGYNFPTSGNALEVYIGYLRKK-TEANGESRLIHTVRGVGYVLRETAP 230 >gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation) [Geobacillus kaustophilus HTA426] gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 235 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 5/232 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + L+ F+V GE+ + + IILDL L + G + Sbjct: 4 KILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASEQPALIILDLMLPKLDGVD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR +I TP+ +L+ DKV GL+ GADDY++KPF+ E++AR++AI+RR+ Sbjct: 64 VCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAILRRTEI 123 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +V G+L + + + G + LT KE++++ L+ K LT++ L+ Sbjct: 124 VQPAAESSERLVVGELEIFPERYEATIGGKPLELTPKEFELLLYLARHKGRVLTRDQLLS 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++ + +I+DV I LR+K+ YI+TV G GY L E + E Sbjct: 184 AVWNYEFAGDTRIVDVHISHLREKIETDTKKPMYIKTVRGLGYKLEEPKRHE 235 >gi|88854568|ref|ZP_01129235.1| two component transcriptional regulator, winged helix family protein [marine actinobacterium PHSC20C1] gi|88816376|gb|EAR26231.1| two component transcriptional regulator, winged helix family protein [marine actinobacterium PHSC20C1] Length = 241 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 11/233 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLT---- 55 M++L+IEDD LA I L + +V GIE + +D ++LDL L Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60 Query: 56 --DIP-GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 D P G V R +R + P+ +L+ + + KV GL +GADDY+ KPF+ EL+AR+ Sbjct: 61 AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120 Query: 113 RAIVRRS-RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 RA++RRS + A L V G ++++ +T E G RI LT KE+ ++E L ++ Sbjct: 121 RALLRRSPQAQAPVLTVRG-VALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSS 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++H +D E ++ +I LR+KL+ A G + IET G GYV+ ++ Sbjct: 180 TELIDHAWDSNYEGFSNVVQTYIRYLRQKLT-AGGEPDVIETRRGSGYVIEQS 231 >gi|325003064|ref|ZP_08124176.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 219 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L ++ L + G + E D ++LD+GL D G Sbjct: 1 MRVLLVEDDAVLGDALRRTLVKHGHPTDLVGSGTAALSAIADREPDVVLLDMGLPDRDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R + P+ ++G + +V+GL++GADDY+ KP + +EL+ARI A++RRS Sbjct: 61 GVCREIR-ERSRVPILAITGRGDVAARVQGLRAGADDYLVKPVSTDELLARIDAVLRRST 119 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A S + GD+ V+L+ ++V G + LT KE+ ++ L+ R+ L + L ++ Sbjct: 120 GGAVASTVAVGDVVVDLERRSVTAAGDEVALTRKEFDLLAALARREGAVLPRTELLEQVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + ++ + LR KL G + + TV G GY L Sbjct: 180 GVADGSAARTLEAHVASLRSKL----GAREVVVTVRGVGYRL 217 >gi|307943941|ref|ZP_07659283.1| transcriptional regulatory protein TctD [Roseibium sp. TrichSKD4] gi|307772782|gb|EFO32001.1| transcriptional regulatory protein TctD [Roseibium sp. TrichSKD4] Length = 223 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 115/203 (56%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI L+ED+ +L+ I L+ +V V GE+ K + D +ILD+ L G Sbjct: 1 MRIALVEDNISLSKGIAYQLRDAGHSVDVLHDGEEADLFLKTEDGDLVILDINLPGKNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L ALR PV +L+ S +D+V+GL +GADDY+ KPF EEL AR+RA+ RR Sbjct: 61 EILAALRERGDPRPVLLLTARSETQDRVKGLDAGADDYLVKPFEMEELAARVRALGRRKA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + LI G L ++++A + + + +E ++ L+ + L+K L+HLY Sbjct: 121 TAPRQLIKLGTLKLDVNALQLLHGDTVLDVPRRELVLLSALAEAQGRALSKGALLDHLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203 E + K+I+V++ +LRK+LS+ Sbjct: 181 AGSESDEKVIEVYVSRLRKRLSS 203 >gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 226 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 130/228 (57%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ + + L+ E ++V T G D +E + DAIILDL L + G Sbjct: 1 MTILVVDDEPDIVELVRFHLEREGYDVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGL 60 Query: 61 EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV R LR ++ P+ +L+ S D V GL+ GADDYI+KPF+ L+AR++A+++R Sbjct: 61 EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120 Query: 119 SR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +R G + IV G+L ++ +V V+G I L+ E+ ++ L+ +++ + Sbjct: 121 TRPPEGRSDEPIVVGELVIDPHRYSVRVRGREIILSATEFAILSFLARNPGWVFSRQQII 180 Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + G D P + +DV I +RKKL +A ++YI+TV G GY L+ Sbjct: 181 DAV-KGEDYPVTERAVDVQILSIRKKLGDA---RDYIQTVRGVGYRLQ 224 >gi|261821426|ref|YP_003259532.1| PhoP family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261605439|gb|ACX87925.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL++ED+ L H + + + V D D E F D I+DLGL D Sbjct: 1 MRILVVEDNVLLLHHLTVQMNEMGHQV---DAASDAKEADYFLHENMPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + P+ +L+ +DKV L++GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGMSMIRRWRANQAKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + I LT EY +IE L ++K+ + Sbjct: 118 RNSGLASQIISLPPFEVDLSRRELVIHSTPIKLTAFEYTIIETLIRNTGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A + I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQ-ADAPDVITTVRGQGY 218 >gi|253573667|ref|ZP_04851010.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847195|gb|EES75200.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 234 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+ +A IE+ L +E ++V + G +E+ + E D +ILD+ L + G Sbjct: 4 RILIVDDDEKIAKLIEIYLMNEGYHVLKAEDGLRALEITEQDEVDLVILDVMLPGLDGIS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R +K +TP+ +LS DK+ GL +GADDY+ KPFN ELVAR+++++RRS Sbjct: 64 VCMKIRESK-TTPILMLSAKDGDMDKITGLMTGADDYMVKPFNPLELVARVKSLLRRSSY 122 Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 AQ +I L+++ + T V G+ + LT E+ ++ LL+ Sbjct: 123 TAQPPSSTQSSQDHIIKIASLAIDKETHTATVDGNPLKLTPIEFGILHLLASHPGRVFGS 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++ + + V I +LR KL G+ I TVWG GY L Sbjct: 183 EEIFELIWKDKYLDSSNSVTVHISRLRDKLEKEMDGEKLIRTVWGVGYKL 232 >gi|271965271|ref|YP_003339467.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508446|gb|ACZ86724.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 6/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++ + L + +F V V G + + D ++LDLGL DI G + Sbjct: 3 RVLVVDDEPQILRALRINLLARHFEVAVAPDGGSALRQAADWHPDLVVLDLGLPDIDGVD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V+ LR + P+ +LSG + +DKV L +GADDY++KPFN EEL+AR+RA+ RR+ Sbjct: 63 VIHGLR-GWTAVPIIVLSGRAGNQDKVEALDAGADDYVTKPFNIEELLARMRAVTRRTAV 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + I G +V+L KT+ + LT E++M+ELL +++ L ++ Sbjct: 122 QDAEPARIEIGGHTVDLADKTIS---GGVRLTPTEWRMLELLLRNPGKLISQRQMLTEVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D + E + ++ +LR+KL ++ T G GY Sbjct: 179 DSKHTTETNYLRQYMAQLRRKLEPDPARPVHLLTEPGMGY 218 >gi|145301037|ref|YP_001143878.1| two-component system response regulator CpxR [Aeromonas salmonicida subsp. salmonicida A449] gi|142853809|gb|ABO92130.1| two-component system response regulator CpxR [Aeromonas salmonicida subsp. salmonicida A449] gi|148292091|emb|CAN84664.1| transcriptional regulatory protein CpxR [Aeromonas salmonicida subsp. salmonicida] Length = 231 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD L + +L E F V V + GE+G+ +F+ ++LD+ + + GF Sbjct: 3 KILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLLRLAEQDFNLVLLDVMMPRLNGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +L LR TPV +L+ +D+V GL++GADDY++KPF+ EL+ARIRAI+RR+ Sbjct: 63 MLAKLRETH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARIRAILRRTQS 121 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RG I DL + + + LT E+ ++E L LR + + L Sbjct: 122 AQPQRGGTSEEIRFMDLVLQPGLQQASSGEQLLELTATEFGLLECL-LRNPGQIVSKSQL 180 Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + L G+ EP + ID+ + LRKKL G+ +TV GRGY+ E A Sbjct: 181 SELVLGKKLEPFDRAIDMHLSNLRKKLPERTDGQPRFKTVRGRGYLWLEQA 231 >gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 228 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 129/222 (58%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L++ +NV V G+ E + + ++LD+ L I G E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVDQDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV L+ GADDY+ KPF +EL+AR++A++RR G Sbjct: 67 VLKWIR-KDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V + +DA + +V G + KE++++ L+ KN T++ L ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 G D P + + +DV I +LR+KL+ GG+++ +ETVWG GY Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLN---GGEDWQLETVWGVGY 223 >gi|121605441|ref|YP_982770.1| osmolarity response regulator [Polaromonas naphthalenivorans CJ2] gi|120594410|gb|ABM37849.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 245 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 122/232 (52%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIP 58 +IL+++DD + + L E F+V L ED L + DA I+LDL + Sbjct: 12 KILILDDDARIRDLLRRYLAQEGFDVI---LAEDSKALNRIMLRDAVDLIVLDLMMPGED 68 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR A TP+ +L+ D++ GL+ GADDY++KPFN EL+ARI A++RR Sbjct: 69 GLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRR 128 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + Q +I G S ++ +T++ G + LT E+ M++ L L+ Sbjct: 129 RPTAEVPGAPSSDQEVINFGPFSFDMSLRTLQKNGEELPLTTGEFAMLKTLVRHPRQPLS 188 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L L GR+ EP + +DV + +LRK + A YI+TVWG GYV Sbjct: 189 REK-LAQLARGREFEPFDRSLDVQVSRLRKLIETDAAVPRYIQTVWGIGYVF 239 >gi|254038194|ref|ZP_04872252.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43] gi|226839818|gb|EEH71839.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43] Length = 219 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILRKWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|154247445|ref|YP_001418403.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161530|gb|ABS68746.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 238 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 126/227 (55%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ A + + V + GE+G+ L ++D +++D L G Sbjct: 13 MRLLLVEDDRDAAEYLRKAFREAGHVVDLAADGEEGLALALDGKYDVMVVDRMLPARDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++ LR +TPV ILS + ++D+V+GL++G DDY+ KP+ EL+AR+ A+ RR Sbjct: 73 SLVTELRGRGHTTPVLILSALGQVDDRVQGLRAGGDDYLPKPYAFTELLARVEALSRRGV 132 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+G A+++ DL ++ A V G I L +E++++E L +T+ M L ++ Sbjct: 133 SQG-AETVYKVSDLELDRLAHRVTRSGKEIPLQPREFRLLEYLLRHAGQVVTRTMLLENV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV + +LR K+ I TV G GY++R A Sbjct: 192 WDYHFDPQTNVIDVHVSRLRSKIDKGF-DVPLIHTVRGAGYMVRAGA 237 >gi|312959545|ref|ZP_07774062.1| DNA-binding response regulator [Pseudomonas fluorescens WH6] gi|311286262|gb|EFQ64826.1| DNA-binding response regulator [Pseudomonas fluorescens WH6] Length = 223 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G ++ ILD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKSTGLTVDVLHDGVAADLALSSEDYAVAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L +LD + V G + LT +E ++E L R ++KE + ++ Sbjct: 121 LGGERQQTCGVLVYDLDTRRFTVGGELMTLTSREQAVLEALIARPGRVMSKEQLASQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I++++ +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GQPIAIVTFRGLGYLL 218 >gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 127/222 (57%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D++ + + L+ E + V GE G+++ + D ++LDL + + G + Sbjct: 6 KILVIDDERKIIDIVRAYLEKEGYRVLTATDGEAGLKVWRQERPDLVVLDLMMPKLSGND 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + TPV +L+ + DK+ GL+ GADDY++KPF ELVARI+A++RR+ Sbjct: 66 VCRIIR-QESETPVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVLRRTEH 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R A L V G+L+V+++ + ++ G I LT E+ +++L++ ++ L+ L Sbjct: 125 RTFAPVLRV-GELTVDVERRQADIGGKVIELTTTEFDLLKLMAANPGRVFSRSEILDRLQ 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ID I LR+K+ +YI+TV+G GY L Sbjct: 184 GDTYEGYERTIDSHIKNLRRKIEPDPDRPSYIQTVYGAGYRL 225 >gi|221636014|ref|YP_002523890.1| response regulator [Thermomicrobium roseum DSM 5159] gi|221157462|gb|ACM06580.1| response regulator [Thermomicrobium roseum DSM 5159] Length = 225 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 10/227 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD L + L E F V V G++ + L D I+LD L + G V Sbjct: 4 VLVVDDDTRLVEMLRRTLSYEGFTVSVAQSGDEALRLVAERRPDLIVLDWLLPGMDGLAV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ LR A TP+ +L+ ++ED+V GL SGADDY+ KPF EL+ARIRA++RR Sbjct: 64 VQRLRAAGDGTPILMLTARDAVEDRVLGLDSGADDYLVKPFAPAELLARIRALLRRVEPA 123 Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL----NH 177 + + +V DL ++ + L+ +E+ ++ LT+ L H Sbjct: 124 SDEKPLVFADLVLDPVTRETRRGDRSFRLSPREFDLLSYFMRHPRRVLTRNQILLAVWGH 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +DG D ++DV+I LR+KL A G I TV G GYVLRE+ Sbjct: 184 DFDGYD----SVLDVYIGYLRQKL-EAGGEPRLIHTVRGVGYVLRES 225 >gi|168179635|ref|ZP_02614299.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182669357|gb|EDT81333.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 229 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ + + ++V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYSVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 VCQNIR-DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I G L+++L+++ V + I LT KE+ ++ELL+L +KE + Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + I K+R K N+I TVWG GY Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGY 222 >gi|260584875|ref|ZP_05852620.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633] gi|260157532|gb|EEW92603.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633] Length = 231 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 M+IL+++DD+ + + + L++E F + G+ +E + Y + D +ILD+ + + G Sbjct: 1 MKILVVDDDREIVELLSIYLRNEKFEIVKAYDGKQALEKIQAYPDIDMVILDIMMPRLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V+ +R + P+ +LS S+ DK++GL +GADDY++KPFN E++AR+++++RR+ Sbjct: 61 ISVVHEIRKTNDALPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRRT 120 Query: 120 RG-----HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + I G L +N + V + G I LT E+ ++ LL+ N + + Sbjct: 121 SALTKESESAEEITIGPLLINKGSHQVTTLDGLEIQLTVLEFGILFLLASHPNKVFSADE 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K++ A GG IETVWG GY Sbjct: 181 IFETVWQQESIVSTKTVMVHVSHLRDKIAEATGGDKVIETVWGVGY 226 >gi|237737806|ref|ZP_04568287.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] gi|229419686|gb|EEO34733.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] Length = 234 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDDK + ++L L+ E + V + + GE GI K D I+LDL + + G E Sbjct: 6 KVLIIEDDKNIRRFLQLELEHEGYKVIIGENGEIGINKFKNETPDIILLDLMMPILSGEE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ IL+ +K+ L GADDYI+KPF EEL AR+R +R + Sbjct: 66 VCKIIRKTS-EIPIIILTAKDQTLNKIELLDMGADDYITKPFEIEELFARMRVALRNKKE 124 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I +L + +D+K + +I LT KEY ++ L L K +++E + ++ Sbjct: 125 FKTHNTITYENLKLEIDSKILFKGEEKIFLTKKEYNIMYLFLLNKEIVISREKIIEEIWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E + KI+DV+I LRKK+ N + YI TV G GY+L++ K+E Sbjct: 185 YDFEGKDKIVDVYINLLRKKIENK--NEKYIHTVRGFGYILKKIIKNE 230 >gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL 200] gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL 200] Length = 237 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L ++ +ILDL + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S AQ +L G L+ NL+ TV I+LTGKE ++++ + TK Sbjct: 123 VLGSNNTAQEKTTLSFKG-LTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKT 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 182 QLFQNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228 >gi|152975591|ref|YP_001375108.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024343|gb|ABS22113.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 232 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +++Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYDIYKAYDGDEALQMLSMYEIDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN EL+AR++A++RR Sbjct: 65 CQQVREHNNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELMARVKALLRRSSFQ 124 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ + +I + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 125 QTISQVNEDGMIRIRSIEIHKHNHTVKVNGENIKLTSIEFDILYLLASNTGRVFSSEEIF 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL + I TVWG GY Sbjct: 185 ERVWNEDGYGSNKTVMVHISNLRDKLETGINTEKIIHTVWGVGY 228 >gi|328882443|emb|CCA55682.1| two component transcriptional regulator, winged helix family [Streptomyces venezuelae ATCC 10712] Length = 234 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 16/227 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI-ILDLGLTDIPGF 60 R+L++EDD L ++ ++L + V V + G +G+ L F E A+ ILDL L ++ G+ Sbjct: 3 RLLVVEDDPDLGLALRVLLARRGYEVSVAEDGREGLRLL-FAERPALMILDLLLPELDGW 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +VL R PV +LSG+ ++D+VRGL+SGADDY+ KPF EL+AR+ A++RRS Sbjct: 62 QVLDRTRDMS-DLPVLVLSGLGDVDDRVRGLRSGADDYLVKPFAHPELLARVDALLRRSG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G V DL + + + QG I L+ EY++++LL + +T E L+ ++ Sbjct: 121 PGSWAGESVGEDLRLVPERRAALWQGSEIRLSDIEYRLLQLLVRNRGRVVTTEQLLDQVW 180 Query: 180 D-----GRDEPEVKIIDVFICKLRKKLSNAAG--GKNYIETVWGRGY 219 D GRD + + +LR+KL A G ++ +E + G GY Sbjct: 181 DDPTSIGRDR-----VKFAVLRLRRKLRTAGGPASRDPLEAIRGLGY 222 >gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296] gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296] Length = 252 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 20 KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +++R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 80 VAKSIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 138 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 Q L + GDL + DA + G + LT +E++++ L+ +T Sbjct: 139 VSVDSQESDEKKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 197 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 198 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251 >gi|295394476|ref|ZP_06804699.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972655|gb|EFG48507.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 227 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD L+ ++ + L + + V + GE + L + +AI+LDLGL ++ G +V Sbjct: 2 ILIVEDDPTLSRAMAVNLIARGYKVLTANTGEQALTLASDHPIEAILLDLGLPNMSGLDV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 + +R P+ +++ + K+ L GADDY++KPF EL+AR+RA +RR + Sbjct: 62 IDGIR-GWSQVPIIVVTARHETQSKIEALDRGADDYVTKPFALGELLARLRANLRRVPQE 120 Query: 122 HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ ++VT D LS++L V V G ++ LT E++++ L+ N + +E L H++ Sbjct: 121 TAEPVVVTSDGRLSIDLARNIVAVSGEQVSLTPHEWKIVGYLARHPNRLVRREELLTHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E E V++ ++R+KL + Y T G GY Sbjct: 181 GKGYEKESNYARVYMSQIRQKLEVDSATPKYFITEPGMGY 220 >gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 229 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ ALA ++ L+ E ++V V GE+G+ + D ++LD L + G EV Sbjct: 5 ILVMEDEDALATLLQYNLEKEGYDVVVAADGEEGLVQIDERQPDLVLLDWMLPKVSGIEV 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + PV +L+ D+VRGL +GADDY++KPF+ EL+ARIRA++RR R Sbjct: 65 CRRLRGRPETRNLPVIMLTARGEESDRVRGLDTGADDYLTKPFSMTELIARIRAVLRRIR 124 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A + GD+ ++ A V G +HL E+++++ ++E L+ ++ Sbjct: 125 PGLADDRVGHGDIVIDRVAHRVRRSGKEVHLGPTEFRLLDHFMRHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV + +LRK L N N I TV GY L Sbjct: 185 GSDVYVEARTVDVHVGRLRKAL-NVEESANPIRTVRSAGYSL 225 >gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18] gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29] gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3] gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3] gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29] gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18] Length = 237 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V G++ ++L ++ +ILD+ + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDIMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ + L++NL+ TV I+LTGKE ++++ + TK Sbjct: 123 VLGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228 >gi|123442021|ref|YP_001006004.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332162074|ref|YP_004298651.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122088982|emb|CAL11793.1| response regulator protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606122|emb|CBY27620.1| transcriptional regulatory protein PhoP [Yersinia enterocolitica subsp. palearctica Y11] gi|325666304|gb|ADZ42948.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860072|emb|CBX70398.1| transcriptional regulatory protein phoP [Yersinia enterocolitica W22703] Length = 223 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + ++ V D ED E F + D I+DLGL Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + + P+ +L+ S +DKV L++GADDY++KPF+ EE++ARI+A++R Sbjct: 58 DGLSLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + V +I LT EY +IE L ++K+ + Sbjct: 118 RNIGLASQIIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LY + E IDV + +LRKKL G+ I T+ G+GY N Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLLAEHEGE-VITTIRGQGYRFDAN 223 >gi|253690197|ref|YP_003019387.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756775|gb|ACT14851.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 222 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDDK L + L L E + ++ L + +ILDLGL D G Sbjct: 1 MKLLIVEDDKLLQEGLLLALGHEGYACDCAGTAKEADALISSAHYSLVILDLGLPDDDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R PV IL+ + D+V GL GADDY++KPF EL AR+RA++RR++ Sbjct: 61 ALLSRWRKNNYQHPVLILTARDKVNDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I +++++L+ + V + I LT KE+ ++ L L+ + + +E+ +Y Sbjct: 121 GSSNSKIQVDNITLDLNNQQVWLDEKPIVLTPKEFAILSRLVLKAGSQVHREVLHQDIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+P ++V I LR+K+ GK+ I T+ G GY+L Sbjct: 181 WNDDPSSNSLEVHIHNLRQKI-----GKDRIRTLRGFGYLL 216 >gi|187777045|ref|ZP_02993518.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC 15579] gi|187773973|gb|EDU37775.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ ++ +++ LK NF+V + GE+G+E + ++ + +ILD+ L + G E Sbjct: 3 KILIVEDEPSIRGFVKVNLKMNNFDVIEAETGEEGVEKAREHKPEVVILDIMLPGMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + +L+ S DKV GL+ GADDYI KPFN EL RI+AI+RR Sbjct: 63 VCKILRQEFTNMGIIMLTAKSQDTDKVLGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++I G ++L +K + I +T EY ++++ ++ L+ + Sbjct: 123 VKENDDNIITGGPFKIDLYSKKIYKDEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + KI+DV I +LR K+ +I TVWG GY Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFINTVWGTGY 223 >gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032] gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032] Length = 242 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 130/239 (54%), Gaps = 12/239 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ + L+ ++V GE+ +E + D I+LDL L + G E Sbjct: 4 KILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RR++ Sbjct: 64 VCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQQ 123 Query: 122 HAQSL------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + I G+L + + V Q R+ LT KE++++ L+ K L Sbjct: 124 SQPAPTQEEKEEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRVL 183 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 T+++ L+ +++ + +I+DV I LR K+ YI+T+ G GY L E +E Sbjct: 184 TRDLLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKPNE 242 >gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus epidermidis ATCC 12228] gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis RP62A] gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus epidermidis ATCC 12228] gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis RP62A] gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU144] gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU045] gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU028] Length = 241 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++L L+ E+F ++ G++ EL + I+LDL L ++ G EV Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMDGIEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 65 ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTA 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V +++LT KEY+++ L+ N +E Sbjct: 124 NTEQSEPHARDIIEFSHLVIDNDAHRVLADDQQVNLTPKEYELLIYLAKTPNKVFDREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ ++ I+TVWG GY DE Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEVKPSDEPT 240 >gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 226 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILL+ED+ + L YV D EDG+ + ++D +ILD+ L Sbjct: 1 MRILLVEDEPKTGAYLRKGLSEAG---YVVDWAEDGVTGQHQAETEDYDLLILDVMLPGQ 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ +L+ LR + STPV L+ + D+VRGL+ GADDY++KPF+ ELVAR+R+I+R Sbjct: 58 DGWTLLQNLRRTR-STPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + DL ++L + QG I LT KE+ ++ LL ++ L + + Sbjct: 117 RGKPRESMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + ++D I +LR K+ +A K I TV G GYVL Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKVDDAYEPK-LIHTVRGMGYVL 219 >gi|222110663|ref|YP_002552927.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|221730107|gb|ACM32927.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 223 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD LA ++ L ++ F + L + A++LD L D G Sbjct: 1 MRILLVEDDLPLASALAEFLCAKGFVCECAASLQAARALLPLAHWGAVLLDWQLPDGEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR V +L+ I D+++GL +GADDY+ KP++ +EL+AR+RA+ RR Sbjct: 61 ALLPLLRARLPEAAVIVLTARDQITDRIQGLDAGADDYLVKPYDPDELLARLRAVERRRS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +L+ LS++L V++ G + LT KE+ ++ +L+ R + +E L+ LY Sbjct: 121 GAASALLQLPGLSIDLGRMAVQLDGQAVELTAKEWAVLRVLAQRPDRIHPRESLLDALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++VFI LR+K+ G+ I+T+ G GY L A Sbjct: 181 LDADASSNTLEVFISNLRRKI-----GRERIQTLRGLGYKLNTAA 220 >gi|74313564|ref|YP_311983.1| DNA-binding transcriptional regulator QseB [Shigella sonnei Ss046] gi|91212442|ref|YP_542428.1| DNA-binding transcriptional regulator QseB [Escherichia coli UTI89] gi|110643266|ref|YP_670996.1| DNA-binding transcriptional regulator QseB [Escherichia coli 536] gi|117625331|ref|YP_854614.1| DNA-binding transcriptional regulator QseB [Escherichia coli APEC O1] gi|170018721|ref|YP_001723675.1| DNA-binding transcriptional regulator QseB [Escherichia coli ATCC 8739] gi|170683979|ref|YP_001745293.1| DNA-binding transcriptional regulator QseB [Escherichia coli SMS-3-5] gi|188495719|ref|ZP_03002989.1| QseB [Escherichia coli 53638] gi|191172517|ref|ZP_03034057.1| transcriptional regulatory protein QseB [Escherichia coli F11] gi|194431717|ref|ZP_03064008.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012] gi|194436837|ref|ZP_03068937.1| transcriptional regulatory protein QseB [Escherichia coli 101-1] gi|218560102|ref|YP_002393015.1| DNA-binding transcriptional regulator QseB [Escherichia coli S88] gi|218691322|ref|YP_002399534.1| DNA-binding transcriptional regulator QseB [Escherichia coli ED1a] gi|218701797|ref|YP_002409426.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI39] gi|218706652|ref|YP_002414171.1| DNA-binding transcriptional regulator QseB [Escherichia coli UMN026] gi|237706225|ref|ZP_04536706.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA] gi|253772137|ref|YP_003034968.1| DNA-binding transcriptional regulator QseB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162974|ref|YP_003046082.1| DNA-binding transcriptional regulator QseB [Escherichia coli B str. REL606] gi|256024393|ref|ZP_05438258.1| DNA-binding transcriptional regulator QseB [Escherichia sp. 4_1_40B] gi|293406640|ref|ZP_06650566.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412] gi|293412399|ref|ZP_06655122.1| transcriptional regulatory protein qseB [Escherichia coli B354] gi|298382380|ref|ZP_06991977.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302] gi|300901405|ref|ZP_07119491.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300916867|ref|ZP_07133570.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300931911|ref|ZP_07147208.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300937501|ref|ZP_07152324.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300950767|ref|ZP_07164654.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300958409|ref|ZP_07170549.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300993285|ref|ZP_07180322.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|301017281|ref|ZP_07182045.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301020011|ref|ZP_07184143.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301325626|ref|ZP_07219092.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301643606|ref|ZP_07243647.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|306816631|ref|ZP_07450763.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101] gi|307139714|ref|ZP_07499070.1| DNA-binding transcriptional regulator QseB [Escherichia coli H736] gi|312972713|ref|ZP_07786886.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70] gi|331643725|ref|ZP_08344856.1| transcriptional regulatory protein QseB [Escherichia coli H736] gi|331648819|ref|ZP_08349907.1| transcriptional regulatory protein QseB [Escherichia coli M605] gi|331659309|ref|ZP_08360251.1| transcriptional regulatory protein QseB [Escherichia coli TA206] gi|331664635|ref|ZP_08365541.1| transcriptional regulatory protein QseB [Escherichia coli TA143] gi|73857041|gb|AAZ89748.1| quorum sensing regulator B [Shigella sonnei Ss046] gi|91074016|gb|ABE08897.1| transcriptional Regulatory protein QseB [Escherichia coli UTI89] gi|110344858|gb|ABG71095.1| probable transcriptional regulatory protein YgiX [Escherichia coli 536] gi|115514455|gb|ABJ02530.1| transcriptional regulatory protein QseB [Escherichia coli APEC O1] gi|169753649|gb|ACA76348.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|170521697|gb|ACB19875.1| transcriptional regulatory protein QseB [Escherichia coli SMS-3-5] gi|188490918|gb|EDU66021.1| QseB [Escherichia coli 53638] gi|190907185|gb|EDV66784.1| transcriptional regulatory protein QseB [Escherichia coli F11] gi|194420073|gb|EDX36151.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012] gi|194424319|gb|EDX40306.1| transcriptional regulatory protein QseB [Escherichia coli 101-1] gi|218366871|emb|CAR04641.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli S88] gi|218371783|emb|CAR19636.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli IAI39] gi|218428886|emb|CAR09831.2| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli ED1a] gi|218433749|emb|CAR14666.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli UMN026] gi|222034749|emb|CAP77491.1| Transcriptional regulatory protein qseB [Escherichia coli LF82] gi|226899265|gb|EEH85524.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA] gi|242378577|emb|CAQ33364.1| QseB transcriptional activator [Escherichia coli BL21(DE3)] gi|253323181|gb|ACT27783.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974875|gb|ACT40546.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli B str. REL606] gi|253979031|gb|ACT44701.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli BL21(DE3)] gi|284923046|emb|CBG36139.1| two-component system response regulator [Escherichia coli 042] gi|291426646|gb|EFE99678.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412] gi|291469170|gb|EFF11661.1| transcriptional regulatory protein qseB [Escherichia coli B354] gi|294493099|gb|ADE91855.1| transcriptional regulatory protein QseB [Escherichia coli IHE3034] gi|298277520|gb|EFI19036.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302] gi|299881968|gb|EFI90179.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300305099|gb|EFJ59619.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300314918|gb|EFJ64702.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300355177|gb|EFJ71047.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300400254|gb|EFJ83792.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300415837|gb|EFJ99147.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300449937|gb|EFK13557.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300457459|gb|EFK20952.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300460334|gb|EFK23827.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300847598|gb|EFK75358.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301077990|gb|EFK92796.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|305850196|gb|EFM50655.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101] gi|307625369|gb|ADN69673.1| DNA-binding transcriptional regulator QseB [Escherichia coli UM146] gi|309703456|emb|CBJ02796.1| two-component system response regulator [Escherichia coli ETEC H10407] gi|310332655|gb|EFP99868.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70] gi|312947587|gb|ADR28414.1| DNA-binding transcriptional regulator QseB [Escherichia coli O83:H1 str. NRG 857C] gi|315288813|gb|EFU48211.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315297717|gb|EFU56994.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|315617296|gb|EFU97904.1| transcriptional regulatory protein qseB [Escherichia coli 3431] gi|320176208|gb|EFW51272.1| Two-component system response regulator QseB [Shigella dysenteriae CDC 74-1112] gi|320180948|gb|EFW55869.1| Two-component system response regulator QseB [Shigella boydii ATCC 9905] gi|320195177|gb|EFW69806.1| Two-component system response regulator QseB [Escherichia coli WV_060327] gi|323188540|gb|EFZ73825.1| transcriptional regulatory protein qseB [Escherichia coli RN587/1] gi|323935972|gb|EGB32267.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323941875|gb|EGB38054.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323951450|gb|EGB47325.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323957822|gb|EGB53536.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|323960927|gb|EGB56546.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323966555|gb|EGB61988.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323971849|gb|EGB67074.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323978902|gb|EGB73982.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324005372|gb|EGB74591.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324011978|gb|EGB81197.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|327251811|gb|EGE63497.1| transcriptional regulatory protein qseB [Escherichia coli STEC_7v] gi|330909085|gb|EGH37599.1| two-component system response regulator QseB [Escherichia coli AA86] gi|331037196|gb|EGI09420.1| transcriptional regulatory protein QseB [Escherichia coli H736] gi|331042566|gb|EGI14708.1| transcriptional regulatory protein QseB [Escherichia coli M605] gi|331053891|gb|EGI25920.1| transcriptional regulatory protein QseB [Escherichia coli TA206] gi|331058566|gb|EGI30547.1| transcriptional regulatory protein QseB [Escherichia coli TA143] gi|332344981|gb|AEE58315.1| transcriptional regulatory protein QseB [Escherichia coli UMNK88] Length = 219 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|330718004|ref|ZP_08312604.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 235 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++V G++ + L D ++LD L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYDVITAADGKEALSLYSDESPDLVLLDQMLPEVDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + TPV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR + Sbjct: 63 VLRQIR-SNDDTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQKV 121 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q+ I GDL+++ A V G I LT +E++++ L+ +T+E Sbjct: 122 TVQNTDAVVDSTEDIELGDLTIHPQAYMVSKNGVDIELTHREFELLYYLAQHIGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + N++ T G GY LR Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLR 231 >gi|323139801|ref|ZP_08074835.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322394937|gb|EFX97504.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 227 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 125/220 (56%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDDK L I L+ + V GE+G L +DA++LD+GL G Sbjct: 1 MRLLVVEDDKDLNRQIVQALEQSGYAVDRAFDGEEGQYLGDNEPYDAVVLDIGLPKKDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ +KV+G +GADDY++KPF+ EE++ARIRA++RR Sbjct: 61 TVLEEWRAAGRDMPVLILTARDRWSEKVQGFDAGADDYVAKPFHMEEVLARIRALLRRRT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA + +V G + ++ + V V G + LT EY+++ L +++ + HLYD Sbjct: 121 GHATNELVCGAVRLDTKSGRVVVDGAPVKLTSHEYRLLAYLMHHSGRVVSRGEIIEHLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++VF+ +LRKKL G + I+TV G GY+ Sbjct: 181 QDFDRDSNTVEVFVGRLRKKL-----GVDLIQTVRGLGYM 215 >gi|229824525|ref|ZP_04450594.1| hypothetical protein GCWU000282_01869 [Catonella morbi ATCC 51271] gi|229785896|gb|EEP22010.1| hypothetical protein GCWU000282_01869 [Catonella morbi ATCC 51271] Length = 225 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 121/207 (58%), Gaps = 3/207 (1%) Query: 16 IELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 I+ +LK +++V +V D GE+ + + E+D +ILD+ + GF+VL+ LR P Sbjct: 16 IQAILKHHHYDVDHVAD-GEEALLYARSMEYDGLILDVMMPKKSGFDVLKTLRSEGSQVP 74 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSV 134 +L+ + IEDKV+GL GADDY++KPF+ +EL+ARIR+++RR ++ + GDL++ Sbjct: 75 TLLLTAKNQIEDKVQGLDLGADDYLTKPFDMQELLARIRSMLRRPANLVENDLRYGDLTL 134 Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFI 194 ++ V + L +E+Q++E+ L + L+ ++ + ++ + E+ ++ V + Sbjct: 135 YRQRASLAVGAAELALNKREFQLMEMFMLNQQQVLSTDLIMERIWGLDSDAEINVVWVNV 194 Query: 195 CKLRKKLSNAAGGKNYIETVWGRGYVL 221 LRKKL G K I+ G GY L Sbjct: 195 SSLRKKLQQ-LGSKVTIKASRGLGYQL 220 >gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 10/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+K + I + LK+E + V + GE+G+EL K E I+LD+ + I G + Sbjct: 6 IMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 ++V +I+ P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 119 --SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R AQ + + GD+ +N+ V V + LT +E+ ++ELL+ K ++ E Sbjct: 124 MNGRISAQNENEVEIGDMKINVTTHKVTVADEEVKLTPREFAILELLARNKGMVMSAEQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R+K+ Y++TVWG GY Sbjct: 184 YERVWKEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGY 228 >gi|170724651|ref|YP_001758677.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169809998|gb|ACA84582.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 227 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD L+ + +L+ E F + + + GE G+ L +FD I+LD+ L + GFEV Sbjct: 4 ILLIDDDLGLSELLGQLLELEGFKLTLANDGEAGLALALEQKFDLILLDVMLPKLNGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ALRV K TPV +L+ D+V GL+ GADDY+ KPFN EL+ARI+AI+RR+ Sbjct: 64 LKALRVKK-QTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELIARIKAIIRRTNLQ 122 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ GD+ ++ + V Q + LTG E+ ++ + ++KE+ + Sbjct: 123 IDETQPSIHEYGDIKLDPSRQEVYCQDMLLILTGTEFTLLFEMLQNGGELISKELLSEKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + P + +D+ + LRKKL + G+ ++T+ G+GY+ Sbjct: 183 LGKKLMPFDRSLDMHLSNLRKKLPDRTDGRPRVKTIRGKGYI 224 >gi|160894396|ref|ZP_02075173.1| hypothetical protein CLOL250_01949 [Clostridium sp. L2-50] gi|156864097|gb|EDO57528.1| hypothetical protein CLOL250_01949 [Clostridium sp. L2-50] Length = 234 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++ + + I ++++ + G + + D +ILDLGL D G Sbjct: 7 KILIIEDEEHINNLISALMEANGYQAVSAYSCRGGQMMFASHRPDLVILDLGLPDRDGMT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR +R + TP+ +LS S DKV L GA+DY++KPF+ ELVAR+R+ +R + Sbjct: 67 FLREVRQSSF-TPIIVLSARSDERDKVEALNEGANDYVTKPFSSNELVARVRSALRIATH 125 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ G+L +N DA+ V + G+ + LT EY ++ LLS LT + Sbjct: 126 RAEDGLRPGGRFEVGELVINYDARLVTIAGNEVKLTQTEYNIVALLSEHAGKMLTYSFII 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 N ++ D K + V + +RKK G +NYI G GY Sbjct: 186 NEIWGYNDSGSRKKLQVNMANIRKKFGAVPGKENYITNELGVGY 229 >gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614] gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614] Length = 225 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 120/220 (54%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ ML+ E + V + G D + D ++LDL L +PG E Sbjct: 3 RVLVVEDEESYSDALAYMLRKEGYEVAIAANGNDALTEFDRNGADIVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R S PV ++S DKV GL+ GADDY++KP++ ELVARIRA++RR + Sbjct: 63 VCRQIRQTS-SVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGQE 121 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + G + ++++ V V G L KE++++E+ LT+ ++ ++ Sbjct: 122 PDLAPPTLEAGPVRMDVERHVVTVDGQAQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + K +DV + +LR K+ G Y+ TV G GY Sbjct: 182 GSDYVGDTKTLDVHVKRLRAKIEPDPGEPRYLVTVRGLGY 221 >gi|330975763|gb|EGH75829.1| heavy metal response regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 191 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/187 (37%), Positives = 111/187 (59%), Gaps = 2/187 (1%) Query: 35 DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSG 94 +G+ L + +ILD+ L + GF VLRALR A+ TPV +L+ ++D++RGL+ G Sbjct: 1 EGLHLALENDHAIVILDVMLPGLDGFGVLRALR-ARKQTPVIMLTAREQVDDRIRGLREG 59 Query: 95 ADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKE 154 ADDY+ KPF+ ELVAR++A+ RRS GH I DL ++L ++ G R+ LT KE Sbjct: 60 ADDYLGKPFSFLELVARLQALTRRSGGHEPVQITIADLWIDLISRKATRAGLRLDLTAKE 119 Query: 155 YQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214 + ++ +L+ R+ L+K ++D + + +++V I +LR KL K + T+ Sbjct: 120 FSLLSVLARRQGDILSKTSIAEMVWDINFDSDTNVVEVAIKRLRAKLDGPYEHK-LLHTI 178 Query: 215 WGRGYVL 221 G GYVL Sbjct: 179 RGMGYVL 185 >gi|291037441|ref|ZP_06568405.1| two component response regulator KdpE [Gluconacetobacter xylinus NBRC 3288] Length = 223 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL++ED+ L +++ + + V + T L ED ++D I+LDLGL D G Sbjct: 1 MRILIVEDEYDLGVAVQERVGLDGHAVDWFTTL-EDARAAMATVDYDFILLDLGLPDGSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 ++LR +R + I + I D++ GL GADDYI KP++ ELVARI A+ RR Sbjct: 60 RDLLREVRRTSSDIAILITTAEDQISDRIAGLSEGADDYIVKPYDLNELVARIAAVARRY 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q+ G+++++ + ++V G R+ LT +E+ ++ELLS +++ L Sbjct: 120 ASPRRQAHCRVGEITIDRENRSVSRDGERLDLTAREWSIMELLSRSPGRIYSRQQIDTVL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y E + ++VFI +LR+KL G N I T+ GRGY L Sbjct: 180 YALDREVDSNTVEVFISRLRRKL-----GNNVIRTIRGRGYCL 217 >gi|295677872|ref|YP_003606396.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295437715|gb|ADG16885.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 247 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 14/229 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59 IL+++DD + + L FNV E+G+ L + + + ++LD+ + ++ G Sbjct: 5 ILIVDDDPVVRELVSEYLHGRGFNVATL---ENGLALQRRLQQERPALVVLDIMMPELDG 61 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 LRALRVA PV +L+ + D+V GL+ GADDY+ KPF ELVARIR ++RR Sbjct: 62 ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRR- 120 Query: 120 RG-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RG ++ G VN A+ + G RI L E+ M+++ T LT+ Sbjct: 121 RGSIAPGAPEQRAPYHFGRFEVNFPARELRRDGERITLRSSEFAMLKVFVTHAMTVLTRA 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L L+ + + +DV I +LR+ + Y++TVWGRGYV Sbjct: 181 QLLEKLHGNSEAHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229 >gi|254422271|ref|ZP_05035989.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189760|gb|EDX84724.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 227 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+ L + +L+ + ++V V GE G ++ ++D +ILD L+ + G Sbjct: 1 MRILLVDDEVELTDPLSHLLRRQGYSVDVASDGETGAQMAISGQYDLLILDRMLSKMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R +STPV L+ +++D+V GL +GADDY+ KPF EL+AR+RA++RR Sbjct: 61 EICQKVRSQALSTPVLFLTAKDTLDDRVDGLDAGADDYLVKPFELRELLARVRALLRRPG 120 Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S++ DL + ++ + V G I L+ KE Q++ L + LT + Sbjct: 121 SPSVASPSILQFEDLKLQVENQLVSRNGKSIELSDKEVQLLAYLMRSPHQLLTHAQIYDA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ P + + LRKK+ G I TV+G+GY L A Sbjct: 181 VWGEGSAPSSNTLAAQMRLLRKKIEQ-PGQPVLIHTVYGKGYRLGSAA 227 >gi|261823246|ref|YP_003261352.1| BasR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261607259|gb|ACX89745.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] Length = 222 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDDK L + L L E + ++ L + +ILDLGL D G Sbjct: 1 MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDLGLPDDDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R PV IL+ ++D+V GL GADDY++KPF EL AR+RA++RR++ Sbjct: 61 ALLSRWRKNNYQHPVLILTARDKVDDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I +++++L+ + V + + LT KE+ ++ L L+ + + +E+ +Y Sbjct: 121 GSSNSKIQVDNITLDLNNQQVLLDEKPVVLTPKEFAILSRLVLKAGSQVHRELLHQDIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+P ++V I LR+K+ GK+ I T+ G GY+L Sbjct: 181 WNDDPSSNSLEVHIHNLRQKI-----GKDRIRTLRGFGYLL 216 >gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 228 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + + L++ENF + ++ I++ E + ++LD+ + I G E Sbjct: 5 ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQIDGIEA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 +R K + P+ ++S S DK+ GL +GADDYI+KPFN EL+AR+++ +RR + Sbjct: 65 CMRIRKDK-NMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQKY 123 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL++N D + + V + I LT KE+ ++ELL+ K L+ Sbjct: 124 NTGSNNQKVIIEIGDLTINTDTRQIWVGENEIRLTPKEFDILELLARNKGIVLSIRKIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I LR+K+ YI+T+WG GY Sbjct: 184 EVWKEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGY 226 >gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei TW08/27] gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma whipplei TW08/27] Length = 227 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L+ + V G + E D II+D+ L D+ GF Sbjct: 5 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + LR A PV LS S EDK+ GL G DDY++KPF+ +E++AR+ AI+RR++ Sbjct: 65 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I GDL ++ ++ V ++G+ I L+ E++++ L N L+K L H++D Sbjct: 125 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I +R+KL+ A + I T G GY++R Sbjct: 185 YDFDGDSSIVESYISYIRRKLA-AYSSETIIHTKRGFGYIMR 225 >gi|73543119|ref|YP_297639.1| two component transcriptional regulator [Ralstonia eutropha JMP134] gi|72120532|gb|AAZ62795.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 225 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED+ LA + L+ F + G E+D ++LDL L G Sbjct: 1 MRILLVEDEVELARWVARALEQGGFVIEHVGDGLQAEARLVAEEYDVVVLDLRLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+A+R TPV IL+ +++++VRGL GADDY+ KPF EL ARI A++RRSR Sbjct: 61 AVLKAMRARDDRTPVLILTAQDTLDERVRGLNLGADDYLPKPFAIAELEARILALIRRSR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + G L + +++ + G + LT +E ++ L R LTK L+ ++ Sbjct: 121 GRAHPRLQCGTLVFDGESRGFTLDGQPLALTPRESTLLGALLARSGQPLTKAQLLDKVFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+V + +LRKKL AG I T+ G GY+L Sbjct: 181 LDADVSPDAIEVLVYRLRKKL---AGHGVTIVTLRGFGYLL 218 >gi|291535584|emb|CBL08696.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291540826|emb|CBL13937.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 229 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+ A+A + L+ F V + G G++ +FD ILDL L I GFE Sbjct: 3 KVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K +TP+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIREEK-NTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121 Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S V D + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGSNTVENDVIEIRGIRIDKTARRVWVNGEEKQFTTKEFDLLTFLAEHPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKIEMNTNKPQYIETIWGVGYRFK 228 >gi|182420209|ref|ZP_02951439.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237665789|ref|ZP_04525777.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375907|gb|EDT73498.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237658736|gb|EEP56288.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 226 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 11/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDIPG 59 IL+++DDK + I L L+++ F TD DG+E L K E + +ILD+ + G Sbjct: 5 ILIVDDDKEIRDLISLYLEADRF---YTDKAADGVEALIKLEEKKYSLVILDIMMPKKDG 61 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 E + +R K PV L+ S D + GL GADDYISKPF+ EL+AR++A +RR Sbjct: 62 IETIIEIR-KKYKMPVIFLTAKSQEIDMINGLTLGADDYISKPFSSLELIARVKAQLRRY 120 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I GDL +N + V V+G+ + LT EY+++E++ +N T E Sbjct: 121 TILNLNSDEKIIRVGDLVLNTEMHEVTVKGNEVRLTPTEYKILEVMCKNRNKVFTVEELY 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + I V I KLR+K+ + YI+TVWG GY Sbjct: 181 EFIWKEKYSVSDTSIMVHITKLRRKIEKDSKNPEYIKTVWGIGY 224 >gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] Length = 241 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 133/227 (58%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E + V V GE+ +E + + D IILDL L I G E Sbjct: 10 KILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEKPDLIILDLMLPKIDGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R AK +TP+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 70 VAKRVR-AKHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAA 128 Query: 120 -RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A+ + I GDL ++ +A TV +G I+LT +E++++ L+ + +E Sbjct: 129 VKAPAEEDNNTDIQVGDLVIHPEAYTVSKRGENINLTHREFELLHYLAEHIGQVINREHL 188 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +V+ +DV + +LR+K+ + ++ T G GY L Sbjct: 189 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235 >gi|260881100|ref|ZP_05403616.2| transcriptional activator protein Irlr [Mitsuokella multacida DSM 20544] gi|260849516|gb|EEX69523.1| transcriptional activator protein Irlr [Mitsuokella multacida DSM 20544] Length = 226 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL EDDK L I+ ML+ + V G D E + ++D +ILD + G Sbjct: 2 MRVLLAEDDKRLGKLIQYMLEQNDIQVEWVTNGSDIYEYAMYTDYDILILDWMMPGETGV 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E LR + +L+ S+ED+V GL +GADDY+ KPF EL+AR+RA+ RRS Sbjct: 62 EACSRLRKDGYEKAILMLTARDSVEDRVTGLDAGADDYLVKPFEFAELMARLRALGRRST 121 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q +V G+ ++N AK ++ + I L+ +E+Q+ +LL+ + +++ L+ ++ Sbjct: 122 QKIQQDVVEVGEFTLNRTAKVLKKKDKVIQLSPREFQIFDLLAQNIGIVVPRDIILDRIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ID ++ LRKKL GG I+TV G GY L Sbjct: 182 GLESDVSSNNIDSYMKILRKKLDLGDGG-TVIKTVRGVGYKL 222 >gi|16761566|ref|NP_457183.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143047|ref|NP_806389.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163396|ref|ZP_03349106.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427815|ref|ZP_03360565.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582713|ref|ZP_03364539.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650085|ref|ZP_03380138.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824413|ref|ZP_06544002.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300975|pir||AF0838 transcription regulator tctD [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503867|emb|CAD05893.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29138680|gb|AAO70249.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 224 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L F V G L + ++LD+ + + G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALMVLDINMPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR + PV +L+ S++ D+V+GL GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G+L + D +QG + LT +E ++ +L R+ ++++ ++ Sbjct: 121 GLVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + I+++I +LRKKL G I T+ G GYVL Sbjct: 180 LNDEVSPESIELYIHRLRKKLQ---GSDVRITTLRGLGYVL 217 >gi|296536395|ref|ZP_06898497.1| response regulator [Roseomonas cervicalis ATCC 49957] gi|296263277|gb|EFH09800.1| response regulator [Roseomonas cervicalis ATCC 49957] Length = 226 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59 MRILL+EDD + ++ L+ V G DG+ + FD ++LD L + G Sbjct: 1 MRILLVEDDAEVGRFVKKGLQEAGHTVEHAANGRDGLFMAAGESFDLLVLDRMLPGGVDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ LR TPV LS + ++++V+GL++G DDY+ KPF EL+AR+ A+ RR Sbjct: 61 VRLVETLRGQGNHTPVLFLSALGGVDERVKGLKAGGDDYLVKPFAFAELLARVEALGRRP 120 Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + + DL ++L ++TV G +I + +E++++E L +T+ M L + Sbjct: 121 AVDAPATRLKVADLELDLLSRTVTRAGRKIDIQPREFRLLEHLMRHAGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D +P+ +IDV + +LR+KL K I TV GY++R Sbjct: 181 WDYHFDPQTNVIDVHVSRLRQKLDKGQ-DKPLIHTVRNAGYMIR 223 >gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon 078 str. F0262] gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon 078 str. F0262] Length = 225 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 128/222 (57%), Gaps = 9/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 +++L+++D++ + I LK+++F V GE+ I+L F+E +ILD+ + + Sbjct: 4 LKVLVVDDEERMRKLISDFLKAKDFEVLEAADGEEAIDL--FFEEKDISLLILDVMMPKM 61 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ VL+++R PV +L+ S D++RG + GAD+YISKPF+ + LVAR+ A++R Sbjct: 62 DGWAVLKSIR-EHSRVPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS + + G + ++ A +V V G + L+ KEY+++ + L++E LN+ Sbjct: 121 RSGIQQEETVSVGGIEIDKSAHSVRVDGKELELSFKEYELLLYFVENRGIALSREKILNN 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + + ID + KLR KL + YI TVWG GY Sbjct: 181 VWNYDYFGDARTIDTHVKKLRAKLKSKG---EYIRTVWGMGY 219 >gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 130/236 (55%), Gaps = 14/236 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E + V GE+ ++ + D I+LD+ L G E Sbjct: 4 RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ IL+ S DKV GL+ GADDY++KPF+ EL+AR+RA +RR Sbjct: 64 VCREVR-KKYDMPIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRR--- 119 Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 H+Q++ I+ G L + DA V +G I LT +E++++ L+ +T+ Sbjct: 120 HSQTVAQEGTNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTR 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E L ++ +V+ +DV + +LR+K+ + ++I T G GY LR ++ Sbjct: 180 EHLLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQE 235 >gi|146313065|ref|YP_001178139.1| DNA-binding transcriptional regulator QseB [Enterobacter sp. 638] gi|145319941|gb|ABP62088.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 219 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDDK + ++ L F+V + TD G G +DA++LDL L + G Sbjct: 1 MRILLVEDDKLIGDGLKAGLTKMGFSVDWFTD-GGTGKTALYSAPYDAVVLDLTLPGMDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++LR R S PV IL+ ++ +V GL+ GADDY+ KPF E+ AR+ A+VRRS Sbjct: 60 LDILREWREKGRSEPVLILTARDALYQRVEGLRLGADDYLCKPFALVEVAARLEALVRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +S + G+++++ + ++ G + L KE+ ++ELL L ++ LY Sbjct: 120 HGQTRSELRHGNVTLDPVSLVAKLDGETLPLKPKEFALLELLMRNAGRVLPRKNIEEKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V + LR+KL G ++I TV G GY L Sbjct: 180 TWDDDVSSNAVEVHVHHLRRKL-----GSHFIRTVHGIGYTL 216 >gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 235 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +A+R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 Q L + GDL + DA + G + LT +E++++ L+ +T Sbjct: 122 ASVDSQESDEKKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV I +LR+K+ + YI T G GY ++ N Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNN 234 >gi|304440255|ref|ZP_07400145.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371304|gb|EFM24920.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 231 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ A+ I++ L+ E ++VY GE+GIE+ + ++LD+ L I GF+ Sbjct: 4 KILLVEDEDAIRKFIKINLEREGYDVYEAGTGEEGIEIADSEDIKIVVLDVMLPGIDGFK 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V LR + +L+ + DK+ GLQ G DDY++KPFN EL RI+++ RR Sbjct: 64 VCETLRKKYKDLGIIMLTAKAEDYDKIMGLQYGTDDYMTKPFNPTELTLRIKSLERRVIP 123 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++I + ++ ++ G + LT E+ +++ K +T+E LN Sbjct: 124 EDEEDKKNIIESDIFKMDTYSRKFYKAGKELDLTPTEFLIMKTFLENKGRAITREELLNK 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + KI+DV I +LR K+ + YIETVWG GY Sbjct: 184 VWGEEFIGDSKIVDVNIRRLRSKIEGDSADPKYIETVWGLGY 225 >gi|323529546|ref|YP_004231698.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323386548|gb|ADX58638.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 230 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 11/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG--IELCKFYE-FDAIILDLGLTDI 57 MR+LL+EDD+ +A + ++ E Y D +DG EL +D ++LDLGL Sbjct: 11 MRLLLVEDDEMIAEPVLDSMRREG---YAIDWAQDGRAAELSLGNGVYDLVLLDLGLPRK 67 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL A R PV IL+ +++D++RGL +GADDY+ KPF+ EL AR+RA+ R Sbjct: 68 DGIEVLNAYRSQGGEAPVIILTARDAVDDRIRGLDAGADDYLVKPFDLNELAARVRALSR 127 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G Q + G+L+++ A V G + L +E+ ++++L TK + Sbjct: 128 RRTGQKQPVYTHGELTLDPAAHEVTKSGVPVPLVPREFTLLQVLIEAPARVFTKAELEDK 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 LY +E I+V + LR+K+ G I TV G GY L+ Sbjct: 188 LYGWGEEVGSNTIEVHVHSLRRKI-----GAEQIVTVRGVGYRLK 227 >gi|260589381|ref|ZP_05855294.1| KDP operon transcriptional regulatory protein KdpE [Blautia hansenii DSM 20583] gi|260540462|gb|EEX21031.1| KDP operon transcriptional regulatory protein KdpE [Blautia hansenii DSM 20583] Length = 239 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD + + I L+ E + + G I L D I++DLGL DI G EV Sbjct: 9 VLVVEDDVPIRNLITTTLEMEKYKFDTAENGNQAIMLAAANNPDIILMDLGLPDIDGIEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 +R +R ++ P+ ++S S +DKV L GADDY++KPF+ EL AR+RA RR + Sbjct: 69 IRKIRTWSVA-PIIVISARSDEKDKVAALDVGADDYLTKPFSVTELSARLRATTRRIQYI 127 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 HA +S+ G+L ++ A V+V G +HL EY ++ LL+ LT L Sbjct: 128 MHADNTNESVFKNGNLEIDYSAGVVKVSGEEVHLMPLEYSLLCLLAQNIGKVLTYRFILE 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V++ LRKKL YI+T G GY Sbjct: 188 KVWQNGITSDISSLRVYMASLRKKLEKDKEHSAYIQTHIGVGY 230 >gi|182435453|ref|YP_001823172.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776090|ref|ZP_08235355.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178463969|dbj|BAG18489.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656423|gb|EGE41269.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 231 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++ + LK+ + V G ++L D ++LDLGL D+ G E Sbjct: 3 RVLVVDDEPQIVRALVINLKARQYEVDAAPDGATALQLAAARHPDVVLLDLGLPDMDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR P+ +LS + ++KV L +GADDY++KPF +EL+AR+RA VRR+ Sbjct: 63 VIRGLR-GWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRASVRRAEP 121 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q +L+ T +V+L AK V G + LT E+ ++E+L ++++ Sbjct: 122 VGQEGGAEDIALVETAGFTVDLAAKKVHRAGRDVRLTPTEWHLLEVLVRNGGRLVSQKQL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ E + V++ +LR+KL + T G GY Sbjct: 182 LQEVWGPSYGTETNYLRVYMAQLRRKLEADPSHPRHFVTEPGMGY 226 >gi|83814704|ref|YP_445301.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Salinibacter ruber DSM 13855] gi|83756098|gb|ABC44211.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Salinibacter ruber DSM 13855] Length = 253 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60 R+L+ EDD L S+E + V+ GED + E+ +D ++LD+ L GF Sbjct: 14 RLLIAEDDPDLGSSLESFFAQHGYEVHHATEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR R + + +PV +L+ E K+RG GADDY++KPF+ +EL AR+ A++ RS+ Sbjct: 74 EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKELAARVEAVLSRSQ 133 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G++SV+ +TV + LT E+ ++ + T+++E L Sbjct: 134 SALPDTGDVFAFGNVSVHFPDETVTRDSEPVGLTDLEFDILTYFIEHRGRTVSREQLLRD 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + ID + LRKK+ Y++TV+G GY Sbjct: 194 VWGISGDITTRTIDRHVASLRKKIEPTPDEPAYLQTVYGIGY 235 >gi|238754408|ref|ZP_04615764.1| Two-component response regulator of virulence determinant [Yersinia ruckeri ATCC 29473] gi|238707441|gb|EEP99802.1| Two-component response regulator of virulence determinant [Yersinia ruckeri ATCC 29473] Length = 223 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + ++ V D ED E F + D I+DLGL Sbjct: 1 MRVLVVEDNALLRHHLSVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + P+ +L+ S +DKV L++GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRNHQAKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + V +I LT EY +IE L ++K+ + Sbjct: 118 RNSGLASQIIEFQPFMIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKKL K+ I T+ G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKL-QVEHDKDVITTIRGQGY 218 >gi|224584566|ref|YP_002638364.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469093|gb|ACN46923.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 224 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L F V G L + +LD+ + + G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYVLAVLDINMPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR + PV +L+ S++ D+V+GL GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G+L + D +QG + LT +E ++ +L R+ ++++ ++ Sbjct: 121 GQVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + I+++I +LRKKL G I T+ G GYVL Sbjct: 180 LNDEVSPESIELYIHRLRKKLQ---GSDVRITTLRGLGYVL 217 >gi|54024784|ref|YP_119026.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016292|dbj|BAD57662.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 219 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 12/223 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 MR+ ++EDD + ++ L + F D G EL + +DA+ILDLGL D G Sbjct: 1 MRLAVVEDDDGVGDALVEALTARGFR---ADRKRRGAELLLDHRGYDAVILDLGLPDGDG 57 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VLR LR S PV IL+ S VRGL+ GADDY+ KP EL+AR+ + RR+ Sbjct: 58 LQVLRQLREVS-SVPVLILTARSDERSVVRGLRGGADDYLVKPPRIAELMARLETVTRRA 116 Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 AQ +VTGD+ V+L A+ VEV G + LT KE++++E L R ++++ ++ Sbjct: 117 AVAAQPPRREVVTGDVRVDLVARVVEVAGSPVPLTQKEFELVEALVERPGAAVSRQQLMD 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +DV + LR KL+ I T+ G GY Sbjct: 177 RIWGDAFVAVSRSLDVHMTGLRAKLNR----PGLITTIRGYGY 215 >gi|254518330|ref|ZP_05130386.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912079|gb|EEH97280.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 224 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 126/225 (56%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL++EDDK+L +E+ LK + VY+ + GE IE+ + D +I D+ + + G+ Sbjct: 2 INILIVEDDKSLRRLMEVFLKQNGYEVYLAEDGEKAIEIFEDKHIDLVICDIMMPKVSGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ LR + P+ +++ +IEDK +G GADDY+ KP + +E++ RI A++RRSR Sbjct: 62 ELVKDLRNSNYELPILMVTAKETIEDKRKGFLVGADDYMVKPIDLDEMLLRINALLRRSR 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKE-YQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GD +N D T+ I L KE Y + +LLS K T+ + ++ Sbjct: 122 ISNEHKLIIGDAVLNYDTLTITKGEQIIELAKKEFYLLFKLLSYPKQ-IFTRNQLMEEIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + + +DV I ++R+KLS+ K I TV G GY N Sbjct: 181 GVDIESDERTVDVHIKRIREKLSDFNEFK--IVTVRGLGYKAERN 223 >gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 242 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 130/239 (54%), Gaps = 12/239 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ + L+ ++V GE+ +E + D I+LDL L + G E Sbjct: 4 KILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RR++ Sbjct: 64 VCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQQ 123 Query: 122 HAQSL------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + I G+L + + V Q R+ LT KE++++ L+ K L Sbjct: 124 SQPTPTQEEKDEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRVL 183 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 T+++ L+ +++ + +I+DV I LR K+ YI+T+ G GY L E +E Sbjct: 184 TRDLLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKSNE 242 >gi|266625369|ref|ZP_06118304.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM 13479] gi|288862730|gb|EFC95028.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM 13479] Length = 225 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ LA ++ +++ ++++ + G DG+ E+D I+LD+ L GF Sbjct: 1 MNILIVEDEVRLADALGQIMEEQHYHTDIVYTGTDGLYCGLSGEYDVIVLDVMLPGENGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+R LR A + TPV +L+ I DKV GL GADDY++KPF EEL+AR+RA+ RR Sbjct: 61 DVVRKLRKAHVQTPVLMLTARDDISDKVTGLDRGADDYMTKPFVPEELLARVRALSRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +NL + IHL KE+++++LL ++K+ ++ ++ Sbjct: 121 EVVVEELHFGDLVLNLSTNDLLRGRKSIHLGYKEFEVLKLLMNNAGKIISKDTLISRVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E ++ +I LRKKL + I TV GY L E + Sbjct: 181 NDSDAEDNNVEAYISFLRKKLF-FLNSRVEIVTVRKVGYRLEEPS 224 >gi|255320575|ref|ZP_05361754.1| transcriptional activator protein IrlR [Acinetobacter radioresistens SK82] gi|262374353|ref|ZP_06067628.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262380816|ref|ZP_06073968.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255302376|gb|EET81614.1| transcriptional activator protein IrlR [Acinetobacter radioresistens SK82] gi|262297558|gb|EEY85475.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|262310610|gb|EEY91699.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 226 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILL+ED++ ++ L Y+TD DG+ E+D IILD+ L + Sbjct: 1 MRILLVEDEQKTGDYLKQGLSEAG---YITDWVTDGLTGKHQALSEEYDLIILDVMLPGL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ ++ +R + + P+ L+ IED+V+GL+ GADDY+ KPF EL+ARI+ ++R Sbjct: 58 NGWNIINDIRSSGKTMPILFLTARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLR 117 Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + ++I DL ++L + V G RI LT KE+ ++EL R+ L + + + Sbjct: 118 RGQQREDNNIIKIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIAS 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +++V I +LR K+ + K I+ + G GYVL Sbjct: 178 QIWDMNFDSDTNVVEVAIKRLRNKVDSNFTPK-LIQNIRGMGYVL 221 >gi|90020199|ref|YP_526026.1| two component transcriptional regulator [Saccharophagus degradans 2-40] gi|89949799|gb|ABD79814.1| two component transcriptional regulator, winged helix family [Saccharophagus degradans 2-40] Length = 229 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 126/230 (54%), Gaps = 12/230 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL EDD+ LA+ ++ L + F+V + + G + + E +ILD+ L G V Sbjct: 4 ILLAEDDRRLANLVKDYLGNHGFDVVIEEAGHNVARSVQTLEPALVILDINLPGKDGLSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + +R K + P+ +L+ + D++ GL+ GADDY+ KP L+ARIRA++RR Sbjct: 64 CKDIR-PKFNGPILMLTARDTDADQILGLEYGADDYVIKPAEPPVLLARIRALLRRYNQE 122 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q G+L++++ A+ V + G I L+ E++++ + + L++E N +Y Sbjct: 123 ISKPQDEYTFGELTIHMAARQVFIGGEEIKLSSHEFELLCTFAAQPGKVLSREYLFNIIY 182 Query: 180 ----DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 DG D + IDV I +LRKK+ +A+ I+TVWGRGY+ +A Sbjct: 183 SRPYDGMD----RTIDVRISQLRKKVGDASDNPTKIKTVWGRGYLFVADA 228 >gi|296115864|ref|ZP_06834488.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] gi|295977552|gb|EFG84306.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] Length = 222 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/217 (32%), Positives = 117/217 (53%), Gaps = 3/217 (1%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 +EDD+ + L EN V+ G +G+ L + +D I+LD L + G +L Sbjct: 1 MEDDQNTTRYVSEGLLPENIVVHTASDGHEGLRLAQQCRWDVILLDRMLPGMDGLSILTR 60 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GHAQ 124 LR ++TP+ L+ M S+ +V GL+ GADDY+ KPF EL ARI+ ++RR+R H Sbjct: 61 LRGDGMATPIIFLTTMDSVPSRVGGLRQGADDYMVKPFAVRELAARIQVLLRRTRLTHHA 120 Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184 LI D+ ++L A++V G ++ L +E ++E T L+++ L ++++ Sbjct: 121 LLIRIADIELDLLARSVTRNGRKVLLQPQEMNLLEFFMRNPRTVLSRQTLLKYVWNMDFP 180 Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 I++ + +LR+KL A I TV GRGY++ Sbjct: 181 VRTNIVETHLSRLREKLGRNAA--PVIHTVKGRGYIM 215 >gi|83718618|ref|YP_441229.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83652443|gb|ABC36506.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 241 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 11/226 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP---G 59 ILL+EDD+ +A + LK++ V D +DG +A L L +P G Sbjct: 24 ILLVEDDRMIADGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKRDG 80 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VLR LR ++ PV IL+ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 81 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQ 140 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++S+I G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 141 SGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 200 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G + I V G GY++ + A Sbjct: 201 GWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 241 >gi|16125553|ref|NP_420117.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|13422643|gb|AAK23285.1| DNA-binding response regulator [Caulobacter crescentus CB15] Length = 221 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++EDD + + L + F V + GED + ++ ++LDLGL + G Sbjct: 1 MRALVVEDDPVVGPDLAKALSASGFVVDIARDGEDASFKGEVEDYALVVLDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R + PV ILS +KV G+++GADDY++KPF EL+AR R +VRR+ Sbjct: 61 SVLRRWRANDRAFPVLILSARGDWTEKVEGIEAGADDYLAKPFEMGELLARARGLVRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +I G L+++ + + G I L+ E+++++ L+ ++ LY Sbjct: 121 GRTSPVIGAGRLALDTRRMSATLDGAPIRLSPLEFRLLDCLAHNPGRAVSAGELAEQLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + I+ + +LR+K+ G + IET G GY+L Sbjct: 181 VADTADTNAIEALVARLRRKI-----GADVIETRRGFGYLL 216 >gi|37527064|ref|NP_930408.1| two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786497|emb|CAE15553.1| Two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] Length = 225 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 128/233 (54%), Gaps = 11/233 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED L H ++ L S F V D+ DGI +L + + +ILD+ L + Sbjct: 1 MRLLLVEDHPELLHWLQKALSSSGFAV---DVASDGIVADQLLQTENYALLILDVSLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L LR + PV +L+ + + ++V+GL SGADDY++KPF+ +EL ARIRA++R Sbjct: 58 DGLSLLVRLRKRGQNLPVLLLTAKTDVSERVKGLNSGADDYLTKPFDLQELEARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G Q + G L D V + + LT +E ++ L R+ ++K+ Sbjct: 118 RSAGVLQETLTFGSLVYQDDGYFV-LNDEPLALTPRELSVLTTLFHRRGRPVSKQQLFEQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 ++ DE + I++++ ++RKKLS + G I T+ G GY L E KD+ Sbjct: 177 VFALSDEANPQSIELYVHRIRKKLSGSNVG---ISTLRGLGYRL-ERQKDDMV 225 >gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 225 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 127/222 (57%), Gaps = 1/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L L++ +F V+ G++ +E K + +ILD+ + ++ G E Sbjct: 4 KILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFLKNDKISLMILDIMMPEMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ + + P+ LS SS++DK+ GL GADDY++KPF+ ELVAR+ A++RR+ Sbjct: 64 VLKTIGNDR-DFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRRNNH 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++I G+LS + D + + G+ ++L KEY+++ + TK+ +L+ Sbjct: 123 RSNNIIKVGNLSWDKDKRLIYKNGNVLNLRSKEYELLTMFMTTPGKVFTKQEIYENLWQS 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + I V I LR+K+ + I T+ G GY+LR+ Sbjct: 183 YYFEDDNTIMVHISNLREKIEDNPRSPTKIITIRGLGYMLRK 224 >gi|307823236|ref|ZP_07653466.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307736011|gb|EFO06858.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 219 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ L + LK E + V G+ E K ++ I+LDL L D+ G Sbjct: 1 MRLLLVEDDEILGEGLVEGLKMEGYAVDWLTNGKLADEALKINSYELIVLDLNLPDMEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ALR K TPV +L+ ++ D+V GL SGADD++ KPF +E+ AR+RA+ RR+ Sbjct: 61 DILKALRTRKDETPVMVLTAKDTVPDRVLGLDSGADDFVIKPFELDEVCARLRALARRNE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I + ++ + V ++ L+ KE++++ L +++ LY Sbjct: 121 GRSVPNIEYKGIVLDPASHQVTWNDEKVDLSQKEFEILSFLMSNIGRVISRARLEESLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E ++V I LRKKL + I TV G GY++ E+ Sbjct: 181 WDSDVESNTVEVHIHHLRKKLD-----PSIIRTVRGVGYIIDED 219 >gi|332652879|ref|ZP_08418624.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium D16] gi|332518025|gb|EGJ47628.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium D16] Length = 226 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L +I L+ + + V G+ EL +D +LDL L + G Sbjct: 1 MRILIVEDEAELCDTIAEGLELDGYAVDRCYDGKVAHELLAVETYDLAVLDLNLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R V ILS S+ DKV+GL +GA+DY++KPF EEL ARIR+++RRS Sbjct: 61 DVLREVRKVNQELKVLILSARGSVSDKVQGLDNGANDYLAKPFAFEELEARIRSLLRRSF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++V +S++ + V G +I LT KE ++E L +++E + H+++ Sbjct: 121 VQENTVLVWNAISLDTAKRIACVNGEQIPLTKKELSILEYFMLHPTKVISQEELMEHIWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + V I LRKKL A + I T G+GY LR Sbjct: 181 MEIDSFSNAVRVHIATLRKKLKQAL-AYDPIVTRIGQGYCLR 221 >gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 231 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ ++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RR Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ + +I + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL G+ I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVMNGEKLIHTVWGVGY 227 >gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 222 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E + D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWN-EQPDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119 Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I G+L + + V V+G I LT +E+ + +L ++ L Sbjct: 120 KEVAVSHEVIRAGELVICPKERKVHVEGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEK 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 180 VWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 220 >gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 232 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 128/232 (55%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ L+ ++V + G + +E + + +ILD+ + ++ G Sbjct: 1 MKILVVDDEQAVRESLRRSLRFNGYDVLIASDGVEAVETVRSENPELLILDVMMPNMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + +L+ + D+V GL +GADDY+ KPF EEL+AR+R++VRR+ Sbjct: 61 EVCRTLRSEGWDRSILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120 Query: 121 GH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +++ + DL +N D + V+ I LT E+ +++LL L++ Sbjct: 121 ANSIGVKTASKTQLSFEDLHLNADTREVKRGERAISLTRTEFALLQLLMESPRKVLSRNT 180 Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ G D P ++V+I LRKK + G I TV G GYVLREN Sbjct: 181 ILEEVW-GYDFPSSGNALEVYIGYLRKK-TEGGGESRLIHTVRGVGYVLREN 230 >gi|255281413|ref|ZP_05345968.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] gi|255267901|gb|EET61106.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] Length = 228 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 131/231 (56%), Gaps = 11/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57 RIL++ED++ LA ++ LK + ++V G + L FY+ D I+LD+ + DI Sbjct: 5 RILIVEDEEKLARTMGDFLKFQGYDVCCAANGREA--LATFYKERKTLDLILLDIMMPDI 62 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EVL+ +R + PV +L+ SS+ED++ G + GADDYI+KP+ E + I A+++ Sbjct: 63 SGYEVLKEIRKTS-NIPVIMLTARSSVEDQMSGFEKGADDYITKPYTLELVRLHIEAVLK 121 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G +++ D+SVNLDAK V + I T KEY+++ L + L+ Sbjct: 122 RA-GKLANILEYQDISVNLDAKKVYWKDKYIETTRKEYELLVYFIENSGIVLARNNILDA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ +++ +D + +LRKKL+ YI++V+G GY+ E +E Sbjct: 181 VWGYDYVGDIRTVDTLVKQLRKKLTEEC---TYIKSVYGVGYLFGEGNYEE 228 >gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 228 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 128/222 (57%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L++ +NV V G+ E + ++LD+ L I G E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPSLVVLDMMLPGIDGME 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV L+ GADDY+ KPF +EL+AR++A++RR G Sbjct: 67 VLKWIR-KDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V + +DA + +V G + KE++++ L+ KN T++ L ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 G D P + + +DV I +LR+KL+ GG+++ +ETVWG GY Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLN---GGEDWQLETVWGVGY 223 >gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] Length = 232 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 131/224 (58%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L L E + V V + GE+G+E + D ++LD+ + + G E Sbjct: 5 KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A +TPV +L+ DKV GL+ GADDY+ KPF+ +E+VARI+A++RR + Sbjct: 65 VCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I +L +++++ + V+G + KE +++ L+ N T++ L Sbjct: 124 TSAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + + IDV + +LR+KL+ A+ K ++TVWG GY Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKLAGAS-DKWELKTVWGVGY 226 >gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 230 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L+ F V G I E D IILD+ L D+ GF Sbjct: 6 KILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDLIILDVMLPDMNGFG 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR A + P+ L+ EDK+ GL G DDY++KPF+ +E+VARI+AI+RR+ Sbjct: 66 VTKRLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTM- 124 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 HA ++I G+L+++ D V V I L+ E++++ L L N L+K L+H++ Sbjct: 125 HADEDAIIRAGELTMDQDTHEVLVGEEPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I LR+KL + + I+T G GY+L+ Sbjct: 185 EYDFNGDAGIVESYISYLRRKLDQHS-SEPVIQTKRGFGYMLK 226 >gi|332668120|ref|YP_004450908.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332336934|gb|AEE54035.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 229 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 12/231 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL+ED+ +A SI+ L +F V V G G L ++ I+LDL L I GF Sbjct: 4 IPILLVEDEPKVASSIQQWLLEHDFLVDVAPDGAVGRHLALTNDYALILLDLNLPFIDGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV +A+R K P+ +++ + S+++K+ G GA+DY+ KPF+ EL+AR+R +++ + Sbjct: 64 EVCKAIRSTKPDVPIIMVTALGSMDEKLNGFAVGANDYLVKPFDFRELLARMRVLLKNAV 123 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SL+ DL +NLD K V GH I LT KE+ ++ L + ++K + Sbjct: 124 SFNTDNPSLLKVADLEMNLDTKNVYRAGHLIPLTPKEFGLLVFLIKNEGRVVSKYDIMEQ 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLREN 224 ++D + +++V+I LRKK+ +NY I T G GY L N Sbjct: 184 VWDLNFDSGTNVVEVYINFLRKKID-----RNYEPKLIHTKPGMGYYLAAN 229 >gi|317056826|ref|YP_004105293.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449095|gb|ADU22659.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 227 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RI ++EDD+ ++ ++ +L+S + G++ L K FD +++DL L G Sbjct: 3 LRIAVVEDDREISSILKELLESSGYECVQAFDGDEASRLLKNERFDMVLMDLMLPYKNGE 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR ++ TPV ++S S +E K+ L+ GADDYI KPF+ +E++ RI ++RRS Sbjct: 63 RLIGELR-SRSETPVIVISAKSMMETKLDVLRLGADDYIIKPFDIDEVLVRIEVVLRRSG 121 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ ++ GDLS+N + TV G ++ LT KE+ +++L TK ++ Sbjct: 122 AFAARPVLEVGDLSMNTEENTVSANGGQVQLTAKEFMLLKLFMEHPQKVYTKAELYETVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E I+V + LR KL + GK++IETVWG GY L+ Sbjct: 182 NEVYYYEDNTINVHVSNLRSKLKKVS-GKDHIETVWGIGYRLK 223 >gi|298241305|ref|ZP_06965112.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554359|gb|EFH88223.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 261 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+K++ + L+ ++ V + G + ++L + + D ++LD+GL + GF V Sbjct: 23 ILLVEDEKSILQFVRDALEDADYTVLSAEDGLNALKLAREKQIDLVLLDIGLPGLDGFSV 82 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + P+ I+S S DKV+G GADDYI KPF+ EL+AR++A +RR + + Sbjct: 83 CRVLR-EDLHIPILIVSARQSDADKVQGFGVGADDYIMKPFSIRELLARVQAHLRREQRY 141 Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q +L+ +G LS++++ V + L+ KE++++ LL+ +++ + Sbjct: 142 RQPKRRMALLKSGGLSIDMERHEVSSGTTSLALSRKEFEVLCLLARHAGQVFARDVIFDR 201 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E ++ + I ++R KL+ YI+T+WG GY Sbjct: 202 VWQDDTESYLETVTEHIKRIRSKLARVDAHTEYIKTIWGVGY 243 >gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] Length = 232 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 10/232 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ L+ + V + G + +E + + +ILD+ + ++ G Sbjct: 1 MKILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R++VRR+ Sbjct: 61 EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120 Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +S + DL ++ D + V G I LT E+ +++LL L++ Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180 Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ G D P ++V+I LRKK + + I TV G GYVLRE+ Sbjct: 181 ILEEVW-GYDFPTSGNALEVYIGYLRKKTEGESDAR-LIHTVRGVGYVLRES 230 >gi|254255322|ref|ZP_04948638.1| Response regulator [Burkholderia dolosa AUO158] gi|124901059|gb|EAY71809.1| Response regulator [Burkholderia dolosa AUO158] Length = 225 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ + F V + G G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQEESYDVIVLDVTLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ + D+V GL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 SVLKRLRDTH-TTPVMFLTARGDVHDRVHGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL+ R L++ ++++D Sbjct: 120 PRETERLAVGDLEIDVVRRRVKRGSVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ +A K I TV G GYVL Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDAFPLK-LIHTVRGVGYVL 219 >gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 230 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + + L L+ E F V G+ +++ +D IILDL L I G+ Sbjct: 6 RILVVDDEKRIVDLVRLYLEREGFIVDEAFEGQQALDMISSVSYDLIILDLMLPVIDGWT 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R K TPV +L+ DKV G + GADDY+ KPF+ EL AR++A++RR Sbjct: 66 VCKKIR-EKYDTPVIMLTARGEEFDKVLGFELGADDYVVKPFSPRELTARVKALLRRMAS 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++ +L ++ A+ V+V G + LT KE+ ++ L+ K +E L + Sbjct: 125 KQDYEAEALIFPELLIDPAARVVKVDGKEVALTPKEFDLLYFLAKNKGKAFNREKLLKEV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ +D I +LR+KL + +YI TVWG GY Sbjct: 185 WGYDFYGSLRTVDTHIKQLREKLGRSKAA-SYINTVWGIGY 224 >gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 232 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 130/224 (58%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L L E + V V + GE+G+E + D ++LD+ + + G E Sbjct: 5 KILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKFNQVKPDMVLLDVMMPKMDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A +TPV +L+ DKV GL+ GADDY+ KPF+ +E+VARI+A++RR + Sbjct: 65 VCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123 Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I +L +++++ + V+G + KE +++ L+ N T++ L Sbjct: 124 TTAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + + IDV + +LR+KL+ A+ K ++TVWG GY Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKLAGAS-DKWELKTVWGVGY 226 >gi|57234028|ref|YP_181944.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224476|gb|AAW39533.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 225 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 124/224 (55%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIEDD LA I L+ + V G+ G E+ Y FD IILD+ L ++ GF Sbjct: 3 MKLLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMALAYTFDVIILDIMLPELDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +R TP+ +L+ DKV GL GADDY+ KPF+ EL+AR+RA++RR+ Sbjct: 63 AVCHKIRSNGNQTPIIMLTARYQEADKVNGLNCGADDYLVKPFSFPELLARLRALLRRAN 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I L++N + G I LT KEY ++E L L KN +TK M H+++ Sbjct: 123 NQHSPSIKLRKLTLNTVDRRAFYDGREIELTAKEYGILEYLVLNKNCIITKNMIEEHIWE 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVLRE 223 + +I+V I ++RKKL N KN I+TV G GY++ + Sbjct: 183 SESDIFSNVIEVLISRIRKKLDN--NNKNSLIKTVKGLGYIIED 224 >gi|332716515|ref|YP_004443981.1| two component response regulator [Agrobacterium sp. H13-3] gi|325063200|gb|ADY66890.1| two component response regulator [Agrobacterium sp. H13-3] Length = 244 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI----ILDLGLTD 56 MR+LL+ED++ +A ++ L F++ V ++G ++L + D + +LD L D Sbjct: 21 MRLLLVEDEREMAAALSAAL--HRFDIIVDNVGT--LDLARHAIMDGVHDLVVLDRQLPD 76 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G +++ LR+ ++ PV +L+ ++ D+V GL GADDY++KPF EEL+ARIRA++ Sbjct: 77 GDGIQLVEDLRLLPVTPPVIVLTAQGTLADRVNGLNLGADDYLAKPFAVEELLARIRALM 136 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RR G G L + + V ++G I LT +E ++E L R+ T+ + + Sbjct: 137 RRPAGSVTMTAKLGKLEFCFETREVRIKGEFIALTRRELLILEALLRRQGRTVLRSVLEE 196 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +Y+ DE + +D I +LR+KL A G + + G GY+LR Sbjct: 197 AVYNFDDEIQSNALDSHISRLRRKLQAADAGLE-VHGIRGVGYLLR 241 >gi|282882486|ref|ZP_06291107.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis 315-B] gi|281297628|gb|EFA90103.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis 315-B] Length = 223 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 112/202 (55%), Gaps = 7/202 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+K L I LK + V + G + +EL +D I+LDL L +I G Sbjct: 1 MRILIVEDEKDLCQMIAKSLKESGYEVDIAYNGNEAMELLDVENYDLIVLDLNLPEIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L R T + ILS S I+DKV GL GA+DY+SKPF+ +EL ARIR++ RR+ Sbjct: 61 EILEEFRTFNQDTKIIILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRSLTRRNF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +LS + + V++ I LT KE ++E L L + +++E ++H++D Sbjct: 121 ITNNQMLSYKNLSFDSKKRIVKIDDKEISLTRKELGILEYLLLNRGRPISQEELIDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLS 202 +D+F +R +S Sbjct: 181 SS-------VDLFSNSIRVHIS 195 >gi|126657980|ref|ZP_01729132.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126620618|gb|EAZ91335.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 231 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 123/229 (53%), Gaps = 14/229 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 MRILL+ED+ L +I+ +L N Y+ D +DG E E + I D L Sbjct: 1 MRILLVEDENDLGTAIKRVLIQHN---YIVDWAKDGEEANDLIEMGLNLYTIGIFDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 I G ++++ +R S P+ +L+ EDKV GL +GADDY+ KPF EL+AR+RA+ Sbjct: 58 KISGIDLIKKIRQQNSSLPILMLTAKDREEDKVIGLDAGADDYLVKPFGMAELLARLRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTV----EVQGHR-IHLTGKEYQMIELLSLRKNTTLT 170 RR + G ++++ T+ ++ H+ I LT KE+Q++E N +T Sbjct: 118 QRRFPTINPQKLTVGHITLDYSNYTIFYRDQMGKHQPIPLTNKEFQLLEYFMKHPNQIVT 177 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ L+ L++ +EP ++ I LR+KL G NYIETV+G GY Sbjct: 178 RDQLLSQLWEWGNEPMSNVVAAQIRLLRRKLEPHC-GDNYIETVYGLGY 225 >gi|172058846|ref|YP_001815306.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991367|gb|ACB62289.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 227 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD +A +EL L + V G+DG+ + + D ++LD+ + ++ GFEV Sbjct: 5 ILIVEDDSKIARLLELELNHAGYATQVAFNGKDGL-VAAENDIDLVLLDVMMPELSGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR PV +L+ + DKV GL GA+DY++KPF EEL+ARIR ++R + Sbjct: 64 LRRLRGKGNPVPVILLTARGEVYDKVAGLDLGANDYVTKPFEIEELLARIRGLLRLTTQA 123 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + + D+ ++LD + LT +E+ ++ L K LT+E LN ++ Sbjct: 124 AVETNQLHYADVLLDLDRHEAFRNDVPLDLTPREFDLLSYLMENKEHVLTREQILNRVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E I+DV+I LRKK+ + I+TV G GYVLRE Sbjct: 184 YDYFGETNIVDVYIRYLRKKMDRSQ--SPLIQTVRGIGYVLRE 224 >gi|324114941|gb|EGC08906.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] Length = 219 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + I+ L F+V G +G E +DA+ILDL L I G Sbjct: 1 MRILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLPGIDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G + ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V I LR+KL G +I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHIHHLRRKL-----GSGFIRTVHGIGYTLGE 218 >gi|259906787|ref|YP_002647143.1| DNA-binding transcriptional regulator CpxR [Erwinia pyrifoliae Ep1/96] gi|224962409|emb|CAX53864.1| Two-component response regulator [Erwinia pyrifoliae Ep1/96] gi|283476573|emb|CAY72401.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Erwinia pyrifoliae DSM 12163] gi|310765997|gb|ADP10947.1| DNA-binding transcriptional regulator CpxR [Erwinia sp. Ejp617] Length = 233 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV V GE + L D ++LD+ + G + Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLD-STVDLLLLDVMMPKKNGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q + + L +N + G + LTG E+ ++ LL+ +++E Sbjct: 121 SEQQHLQHDNSSPTLEIDLLRLNPGRQEASFDGETLDLTGTEFTLLYLLAQHLGQVVSRE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G + +T+ GRGY++ Sbjct: 181 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGHPWFKTLRGRGYLM 229 >gi|302870792|ref|YP_003839428.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573651|gb|ADL41442.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 230 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 126/225 (56%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I+ L+ E + V + GED + K FD ++LD+ L I GF V Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTTSYDGEDALNRIKSGNFDMVLLDVMLPKIDGFSV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 + +R P+ +++ + DKV GL+ GADDYI+KPF EL+ARIRA +RR+ + Sbjct: 66 CKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQS 124 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 AQ ++ G L++N + V+ G I LT +EY++++ L +K ++E L ++ Sbjct: 125 SAQDGKVLKAGALTLNPETFEVKKNGKIIELTVREYELLKFLMSQKGQVFSREELLEKVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +V+ +DV + +LR+K+ + +I T G GY N Sbjct: 185 DYEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229 >gi|300702472|ref|YP_003744072.1| response regulator, chey family [Ralstonia solanacearum CFBP2957] gi|299070133|emb|CBJ41423.1| putative response regulator, CheY family [Ralstonia solanacearum CFBP2957] Length = 236 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 124/237 (52%), Gaps = 15/237 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+A+A I L V G +E D +ILDLGL I G Sbjct: 1 MRILLIEDDRAIASGIHAGLTQAGHRVLAVHDGVFAVEHLARQSHDLVILDLGLPGIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R TPV IL+ S+++KV GL +GADDY+ KPF ELVAR++A++RR Sbjct: 61 TLLSQYRARDRGTPVLILTARDSLQNKVDGLNAGADDYLLKPFEMLELVARVQALLRRRG 120 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + IV G L ++ + + V + L+ +E+ ++ELL LR+ ++K + Sbjct: 121 DNGEPMPRPDIVVGRLRMSGAERRIFVDAAALELSPREFAVLELLMLRQGRVVSKVQLQD 180 Query: 177 HLYD--------GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 HL G D I+V++ ++R+K+ + I TV G GY+L+ A Sbjct: 181 HLASFGHALGEAGHDVVGDTAIEVYVHRVRRKIEQT---EAEIVTVRGFGYLLQARA 234 >gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 237 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 132/239 (55%), Gaps = 16/239 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E + V GE+ ++ + D I+LD+ L G E Sbjct: 4 RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR--- 119 Query: 122 HAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 HAQ+ IV G L + DA V+ +G I LT +E++++ L+ +T Sbjct: 120 HAQTANQEEGENETNEIVIGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMT 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +E L ++ +V+ +DV + +LR+K+ + N+I T G GY LR N + E+ Sbjct: 180 REHLLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLR-NPEQES 237 >gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143] gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143] Length = 235 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +Q L + GDL + DA + G + LT +E++++ L+ +T Sbjct: 122 ASVDSQETDEKKSQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|330824770|ref|YP_004388073.1| two component heavy metal response transcriptional regulator [Alicycliphilus denitrificans K601] gi|329310142|gb|AEB84557.1| two component heavy metal response transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 227 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 127/222 (57%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L + + G DG+ + +D +ILD+ L + G+ Sbjct: 1 MKILIVEDEPKTGEYLRQGLSEAGYVADLVPHGTDGLHMALHGAYDLVILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I+RR+ Sbjct: 61 QVLQSLRERGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRAP 120 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++++ DL ++L + V G R+ LT KE+ ++ELL R L + + + ++ Sbjct: 121 AGNEAMVLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V + +LR K+ K I+TV G GYVL Sbjct: 181 DMNFDSDTNVIEVAMRRLRMKIDEGHPIK-LIQTVRGMGYVL 221 >gi|260588963|ref|ZP_05854876.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331083315|ref|ZP_08332428.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540742|gb|EEX21311.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330404396|gb|EGG83941.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium 6_1_63FAA] Length = 229 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 15/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++A+A + L+ F V + + G+ G++ ++D ILDL L ++ GFE Sbjct: 3 KILIVEDEEAIADLEKDYLELSGFEVEIENRGDVGLKRALEEDYDLFILDLMLPEVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICREIRNQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARY-- 119 Query: 122 HAQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + LI TG L ++ A+ V V G + T KE+ ++ L+ N TK Sbjct: 120 --ERLIGTGIQENDIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLLTFLAQNPNRVFTK 177 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ ++ + V I K+R+K+ YIET+WG GY + Sbjct: 178 DELFKEIWAMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228 >gi|113868353|ref|YP_726842.1| response regulator [Ralstonia eutropha H16] gi|113527129|emb|CAJ93474.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 224 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ LA+S+ L F V G L ++ +ILDLGL + G Sbjct: 1 MRILLAEDNVMLANSLSQALGQAGFTVDCMHDGRSADNLLSTQDYALLILDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+VRGL GADDY++KPF+ EL AR RA++RR+ Sbjct: 61 EVLRRLRQRRNPLPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSELEARARALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + I G L + ++ V + G + LTG+E ++E+L LR + K ++ Sbjct: 121 GHESTQIACGPLHYDSVSRAVLLHGELLPLTGRERAVLEVLLLRDGRAVNKAALSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL G I T+ G GY+L Sbjct: 181 IDESVNPDAIEIYVHRLRKKLD---GSGVAIVTLRGLGYLL 218 >gi|148655542|ref|YP_001275747.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567652|gb|ABQ89797.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 261 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 126/233 (54%), Gaps = 10/233 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+++ED+ + +E+ L+ E F+V + ++L + + IILD+ L D G ++ Sbjct: 11 IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNGCDL 70 Query: 63 LRALRV-------AKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 R +R A+I+ P+ ILS + ED++ G ++GADDY++KPF+ EL RI++ Sbjct: 71 CRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIKS 130 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I+RRS G + + I G L ++ + V V H + LT KE++++ LL+ ++E Sbjct: 131 ILRRSIGLSIACIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSREEL 190 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG--KNYIETVWGRGYVLRENA 225 L ++ + +DV + +LR KL A G N I T WG GY L A Sbjct: 191 LERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLESPA 243 >gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L] gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L] Length = 237 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ EDDK + + +++ L+ E + V G++ ++L ++ +ILDL + + G Sbjct: 4 IRILIAEDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ + L ++L+ TV I+LTGKE ++++ + TK Sbjct: 123 VLGSDANIQEKTTLTFKGLLIDLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDNNYIEDDNTVMVHIRKLRKKIEVDPSNPKFIQTVWGIGY 228 >gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] Length = 236 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 124/225 (55%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + L+ E + G D + + D +ILD+ + + G E Sbjct: 12 RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 L LR PV L+ ++ D+V+GL++GADDY++KPF+ +E+ AR+ ++R R Sbjct: 72 TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGR 131 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ A +++ DL++++D+ V G I LT E++++ L L+K+ L+ + Sbjct: 132 TQQAASTVLQVADLTLDVDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +V +++++I LRKK+ A I TV G GY++RE Sbjct: 192 WSYDFGGQVNVVELYISYLRKKID--ADRPALIRTVRGAGYIMRE 234 >gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 233 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + L+ F V G I E D I+LD+ L D+ GF Sbjct: 9 RILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDIIVLDVMLPDMNGFG 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 V + LR A + P+ L+ EDK+ GL G DDY++KPF+ +E+VARI+AI+RR+ + Sbjct: 69 VTKRLRGAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTMQ 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++I G+L+++ D V V I L+ E++++ L L N L+K L+H+++ Sbjct: 129 ADEDAVIRAGELTMDQDTHEVFVGDTPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++ +I LR+K+ +A + I+T G GY+L+ Sbjct: 189 YDFNGDAGIVESYISYLRRKV-DAHSSEALIQTKRGFGYMLK 229 >gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str. Twist] gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str. Twist] Length = 251 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L+ + V G + E D II+D+ L D+ GF Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + LR A PV LS S EDK+ GL G DDY++KPF+ +E++AR+ AI+RR++ Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I GDL ++ ++ V ++G+ I L+ E++++ L N L+K L H++D Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I +R+KL+ A + I T G GY++R Sbjct: 209 YDFDGDSSIVESYISYIRRKLA-AYSSETIIHTKRGFGYIMR 249 >gi|303241663|ref|ZP_07328161.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590778|gb|EFL60528.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ L E F + GE IE + D I+LD+ L + GF Sbjct: 4 KILIVDDEKNIVDILKFNLVKEGFQTIEANDGEQAIECALKEKPDLILLDIMLPKVDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ISTP+ +++ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VCRKLR-QTISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVSS 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I GDL +++D V+ + LT +E+++++ L+L++ ++E L Sbjct: 123 ENTVSKECNAIKCGDLEIDIDRYEVKRDNKVLELTLREFELVKFLALQQGQIFSRESLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +V+ +DV + +LR+K+ N +YI T G GY Sbjct: 183 KVWGYEYYGDVRTVDVTVRRLREKVENDPSNPSYIMTKRGVGY 225 >gi|189348833|ref|YP_001942028.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] gi|189338971|dbj|BAG48038.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] Length = 227 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRIL++ED+ + L YV D EDGI + E+D ++LD+ L Sbjct: 1 MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQ 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ +L+ LR +K STPV L+ + D+V+GL+ GADDY++KPF+ EL ARI++I+R Sbjct: 58 DGWTLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + + DL ++L + QG I LT KE+ ++ LL R+ L + + Sbjct: 117 RGQPRDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + ++D I +LR K+ +A K I TV G GYVL Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219 >gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 228 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 129/222 (58%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L++ +NV V G+ E + + ++LD+ L I G E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV L+ GADDY+ KPF +EL+AR++A++RR G Sbjct: 67 VLKWIR-KDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V + +DA + +V G + KE++++ L+ KN T++ L ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 G D P + + +DV I +LR+KL+ GG+++ +ETVWG GY Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLN---GGEDWQLETVWGVGY 223 >gi|332716521|ref|YP_004443987.1| two component response regulator [Agrobacterium sp. H13-3] gi|325063206|gb|ADY66896.1| two component response regulator [Agrobacterium sp. H13-3] Length = 229 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D+ + + + L ++++ V +EL + D ++LDLGL D+ G Sbjct: 6 VRILIVDDEPPIRKLLRVGLSTQDYAVSEAMNARVAMELMNEDKPDLVVLDLGLPDMSGH 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 E+L R +S PV ILS + V+ L+ GADDYI+KPF ELVARIR +R Sbjct: 66 ELLEKWRGEGLSLPVIILSSRTDEAGIVKALELGADDYITKPFGMNELVARIRVALRHRL 125 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S+G + + TGDLSV+L + V+V+ + L+ KEY ++ +L LT L H Sbjct: 126 QSQGE-RPVFHTGDLSVDLVRRIVKVEDREVKLSPKEYDILRVLVQHAGKVLTHRFLLEH 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D + +V+ + V++ +LR+K+ YI T G GY L+E Sbjct: 185 VWD--ELTDVQYLRVYVRQLRQKIEKIPDQPRYILTETGVGYRLQE 228 >gi|217968993|ref|YP_002354227.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217506320|gb|ACK53331.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 225 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 128/228 (56%), Gaps = 12/228 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD ALA I L+ + V V G L + +D ++LD+GL + G+ Sbjct: 1 MRLLLVEDDPALAEGIAEFLRGQGDEVEVEGDGMRADRLLQNNGYDFVLLDVGLPGLGGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++R +R PV +++ +++D++ GL GADDY+ KPF EL AR+RA+ RR Sbjct: 61 ELVRRIRKRGQRMPVIVITARDALDDRIYGLDLGADDYLVKPFELAELSARMRAVQRRG- 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G L+++LD + E+ G + L+G+E++++E L T+T+E N D Sbjct: 120 GGAGARLAFGALALDLDGRLAELDGAPMTLSGREWEVLEALVRADGRTVTRE---NLQGD 176 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G ++V I +LR ++ A I TV G GY L E +K++ Sbjct: 177 G----SGNALEVCISRLRPRVEAAG---LLIRTVRGFGYRL-ERSKEQ 216 >gi|255009234|ref|ZP_05281360.1| putative two component system response regulator [Bacteroides fragilis 3_1_12] gi|313146983|ref|ZP_07809176.1| two-component system response regulator [Bacteroides fragilis 3_1_12] gi|313135750|gb|EFR53110.1| two-component system response regulator [Bacteroides fragilis 3_1_12] Length = 224 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ +A IE LK V V + G G EL + FD +I+D+ + + G E Sbjct: 3 KILLVEDEVNIASFIERGLKEFGHTVSVANDGNSGWELIRQEVFDLLIIDIIMPGMNGLE 62 Query: 62 VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R R PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+AI+RR R Sbjct: 63 LCRLYRRQYGYLVPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKAILRRGR 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V DL +N +++ I LT KEY+++E + L++ L ++D Sbjct: 123 EDSARQLVCDDLVLNCNSRRARRGEAEIDLTVKEYRLLEYFMTHQGLVLSRLTLLRDVWD 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++DV++ LR K+ K I TV G GY++ Sbjct: 183 KNFDTNTNVVDVYVNYLRGKIDKDF-SKKLIHTVVGSGYIM 222 >gi|323706108|ref|ZP_08117677.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534552|gb|EGB24334.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 235 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 140/228 (61%), Gaps = 10/228 (4%) Query: 3 ILLIEDDKALAHSIELM---LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 IL+IED+ AH +EL+ L+++ +NV +TD G+ G+E CK D ++LDL L DI G Sbjct: 5 ILVIEDE---AHILELLRYNLEAQGYNVVLTDNGKGGLEKCKETNPDLVLLDLMLPDIDG 61 Query: 60 FEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 +V + L+ + + P+ +L+ S DK+ GL+ GADDYI+KPF+ EL+ARI+ ++R Sbjct: 62 IDVCKKLKSDEHLKNIPIIMLTAKSEEVDKILGLELGADDYITKPFSIRELLARIKVVLR 121 Query: 118 RSRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RS+ ++ +I GD++++ + V + LT KE+++++LLS + LT++ L Sbjct: 122 RSKNESEDNEIIKFGDITIDTEKHLVYKGNELLDLTLKEFELLKLLSKNRGKVLTRDYLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ E + +DV I LRKK+ + YIETV G GY L++ Sbjct: 182 DKVWGYEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKLKD 229 >gi|288549514|ref|ZP_05967289.2| DNA-binding response regulator PhoP [Enterobacter cancerogenus ATCC 35316] gi|288318237|gb|EFC57175.1| DNA-binding response regulator PhoP [Enterobacter cancerogenus ATCC 35316] Length = 224 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 2 MRVLVVEDNALLRHHLKVQLQEMGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S PV +L+ +DKV L +GADDY++KPF+ EE+ AR++A++R Sbjct: 59 DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + I LT EY ++E L ++K+ + Sbjct: 119 RNSGLASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A ++ I TV G+GY+ Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQDVITTVRGQGYLF 221 >gi|240144354|ref|ZP_04742955.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] gi|257203603|gb|EEV01888.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] Length = 229 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+ A+A + L+ F V + G G++ +FD ILDL L I GFE Sbjct: 3 KVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K +TP+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIREEK-NTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121 Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S V D + ++ A+ V V G T KE+ ++ L+ N TKE Sbjct: 122 LIGSNAVENDVIEIRGIRIDKTARRVWVNGEEKQFTTKEFDLLTFLAEHPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKIEMNTNKPQYIETIWGVGYRFK 228 >gi|223985682|ref|ZP_03635730.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM 12042] gi|223962373|gb|EEF66837.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM 12042] Length = 223 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++ H I LK+ F+V G E FD +I+D L +I G E Sbjct: 3 RILLIEDEDSIRHLISYDLKNAGFDVTGCPDGASAREKGLNESFDIMIIDWMLPEISGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++R R I + + +L+ ED + ++G DDYI+KPF+ EL+ARI+A V+R Sbjct: 63 LVRLFRGKGIDSVMMMLTAKDEEEDILEAFEAGVDDYITKPFSPRELLARIQAHVKRIVK 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ ++ G L+++L ++ V V G + LT KE++++E L L+++ LN ++D Sbjct: 123 TSRRVLEMGGLTMDLGSREVSVNGQPVSLTKKEFELLEYLLRNPQIVLSRDNILNEIWDF 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + +I+DV I KLR KL G I ++ G GY L A Sbjct: 183 DYDGDTRIVDVHIFKLRNKLQ---GSGVKIASLRGIGYKLEVQA 223 >gi|167996917|gb|ACA14308.1| two component heavy metal transcriptional regulator [uncultured bacterium] Length = 253 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L I+ L F V G DG EF +++D+ L D+ GF Sbjct: 1 MKVLLVEDEIKLGEYIKKGLTEAGFIVDHHTTGLDGYHALMTDEFSVVLMDVMLPDVSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++R R A TPV L+ + DK++G++ G DDY++KPF EL+ RI++++RR+ Sbjct: 61 ELVRNYRAAGKHTPVLFLTAKDDLSDKIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ DL +++ +TV I LT KE+ +++ L R+ L + + + + Sbjct: 121 QSDYKSTIMHIADLKMDIAKRTVHRGDTAIKLTAKEFSLLQFLLERQGEVLPRSVIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +IDV I +LR K+ + K I TV G GY L Sbjct: 181 WDMNFDSDTNVIDVAIRRLRLKIDDEFAIK-LIHTVRGMGYRL 222 >gi|161506505|ref|YP_001573626.1| two component heavy metal response transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160346743|gb|ABX19826.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] Length = 228 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRIL++ED+ + L YV D EDGI + E+D ++LD+ L Sbjct: 2 MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQ 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ +L+ LR +K STPV L+ + D+V+GL+ GADDY++KPF+ EL ARI++I+R Sbjct: 59 DGWTLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + + DL ++L + QG I LT KE+ ++ LL R+ L + + Sbjct: 118 RGQPRDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + ++D I +LR K+ +A K I TV G GYVL Sbjct: 178 VWDMNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 220 >gi|121595048|ref|YP_986944.1| two component heavy metal response transcriptional regulator [Acidovorax sp. JS42] gi|120607128|gb|ABM42868.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 227 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L ++ + G DG+ + ++D +ILD+ L + G+ Sbjct: 1 MKILIVEDEPKTGAYLRQGLSEAGYSPDLVPNGADGLHMAIHGQYDLVILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I+R R Sbjct: 61 QVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILR--R 118 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 GHA S + DL ++L + V G R+ LT KE+ ++ELL R L + + + Sbjct: 119 GHAGSEGSTLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +I+V + +LR K+ K I+TV G GYVL Sbjct: 179 VWDMNFDSDTNVIEVAMRRLRVKIDEGHPVK-LIQTVRGMGYVL 221 >gi|221234299|ref|YP_002516735.1| two-component response regulator [Caulobacter crescentus NA1000] gi|220963471|gb|ACL94827.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 222 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L++EDD + + L + F V + GED + ++ ++LDLGL + G Sbjct: 2 MRALVVEDDPVVGPDLAKALSASGFVVDIARDGEDASFKGEVEDYALVVLDLGLPRLDGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R + PV ILS +KV G+++GADDY++KPF EL+AR R +VRR+ Sbjct: 62 SVLRRWRANDRAFPVLILSARGDWTEKVEGIEAGADDYLAKPFEMGELLARARGLVRRAA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +I G L+++ + + G I L+ E+++++ L+ ++ LY Sbjct: 122 GRTSPVIGAGRLALDTRRMSATLDGAPIRLSPLEFRLLDCLAHNPGRAVSAGELAEQLYG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + I+ + +LR+K+ G + IET G GY+L Sbjct: 182 VADTADTNAIEALVARLRRKI-----GADVIETRRGFGYLL 217 >gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium urealyticum DSM 7109] gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium urealyticum DSM 7109] Length = 226 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A++ + ++L++E F+ V G D + + ++ D I+LD+ L + G + Sbjct: 4 KILVVDDDPAISEMLTIVLQTEGFDTVVVGDGNDAVTAAQEHDPDLILLDVMLPGMSGID 63 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R + ST P+ +L+ + D V GL+SGADDYI+KPF +EL+AR+RA +RRS Sbjct: 64 VCRTVR--EFSTVPIVMLTARTDTVDVVLGLESGADDYITKPFKPKELIARVRARLRRSP 121 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + I G++ ++ V G I+LT E+ ++ L+ R ++E L + Sbjct: 122 EEADESTTIRVGEVEIDTAGHEVTRGGEVINLTPIEFDLLTTLASRPGQVFSREELLEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + R + ++++V + +LR K+ + TV G GY Sbjct: 182 WGYRKSGDTRLVNVHVQRLRSKVERDPDDPQVVLTVRGIGY 222 >gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ ++ L+ E F+V V G+ +E + D I+LDL L + G E Sbjct: 5 KVLVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHPPDLIVLDLMLPKMDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ + DKV GL+ GADDY++KPF+ ELVAR++AI+RR Sbjct: 65 VCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRRMEA 124 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + G+L ++ + V +G + LT KE++++ L+ + L+++ Sbjct: 125 LRDQGIPGDRNCLRVGELEIDTEGYEVRKKGDPVDLTPKEFELLIHLASHRGKVLSRDQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LN ++D + +I+DV + LR+K+ + YI+TV G GY Sbjct: 185 LNAVWDYDYIGDTRIVDVHVSHLREKVEEDSRNPIYIKTVRGIGY 229 >gi|303242269|ref|ZP_07328756.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590179|gb|EFL59940.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 230 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +A L+ ++V + G+ G+ +F+ IILDL L +I GFE Sbjct: 4 RILIVEDEVTIAELQRDYLEISGYDVEIEKTGDKGLSRSLKEDFNLIILDLMLPNIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R +K + P+ ++S DK+RGL GADDYI+KPF+ ELVAR+ A + R Sbjct: 64 ICRKIRESK-NIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVTAHISRYER 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ + +L ++ D++ V ++ I LTGKE+ ++ ++ N ++E Sbjct: 123 LIGSKEKKTETVNIRNLIIDKDSRRVWLENQEITLTGKEFDLLLFMAENPNRVFSREELF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ ++ + V I K+R+K+ YIET+WG GY Sbjct: 183 DNIWGMDACGDISTVTVHIKKVREKIELDNSKPQYIETIWGIGY 226 >gi|300777987|ref|ZP_07087845.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300503497|gb|EFK34637.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 224 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 128/223 (57%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ LA SI L E++ ++ + + +++D I+LD+ L D G Sbjct: 1 MKILIVEDEAELAKSISEYLSGESYLCEHAATFDEAMNKTEAFDYDCILLDIMLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L L+ + V I+S ++++DK+ GL+ GADDY++KPF+ EL+AR+ +++RR + Sbjct: 61 KILEELKKQQKQDGVIIISAKNALDDKIEGLKLGADDYLTKPFHLSELMARVYSVIRRKQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 + +++ +L ++L AKTV V I LT KE+ ++ KN ++K HL Sbjct: 121 FSSSNVVKQNELQIDLLAKTVTVNNETISLTKKEFDLLIYFIGNKNKVISKSTLAEHLSG 180 Query: 180 ---DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D D + + + L+KKL +A G +Y++TV+G GY Sbjct: 181 DLADMLDNHD--FVYAHVKNLKKKLYDAGCG-HYLKTVYGTGY 220 >gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 232 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + +N+ ++TV + G RI+LT EY ++ L++ +N T E Sbjct: 125 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I +LR K+ +I+ VWG GY Sbjct: 185 ESVWNERAYEINNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228 >gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W] gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W] gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 237 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE ++L + +ILDL + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122 Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S + Q + + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGY 228 >gi|312126307|ref|YP_003991181.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776326|gb|ADQ05812.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 230 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I+ L+ E + V + GED + K FD ++LD+ L I GF V Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKIDGFSV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 + +R P+ +++ + DKV GL+ GADDYI+KPF EL+ARIRA +RR S Sbjct: 66 CKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQS 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G L++N + V+ G I LT +EY++++ L +K ++E L ++ Sbjct: 125 STQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +V+ +DV + +LR+K+ + +I T G GY N Sbjct: 185 DYEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229 >gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16] gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16] Length = 233 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD +A + L L+ E F V G G+E + ++ ++LD+ L + G+ Sbjct: 4 KVLIVEDDSNIAELLHLYLEKEGFETKVAKDGGKGVEYFRSFQPALVLLDIMLPVMDGWT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL+ +R + +TPV +L+ EDKV GL+SGADDYI KPF +E++ARI A++RR+ Sbjct: 64 VLKKIR-EESATPVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVMRRTGQ 122 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + L +NLD+ + V G R+ KE +++ L+ N T+ L+ + Sbjct: 123 EEEQENKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLASAPNRVFTRNQLLDEV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + +DV I +LR+KL + + ++TVWG GY Sbjct: 183 WGFDYFGDSRTVDVHIKRLREKLEGVS-DQWRLKTVWGVGY 222 >gi|266621451|ref|ZP_06114386.1| KDP operon transcriptional regulatory protein KdpE [Clostridium hathewayi DSM 13479] gi|288866892|gb|EFC99190.1| KDP operon transcriptional regulatory protein KdpE [Clostridium hathewayi DSM 13479] Length = 228 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDDK + + I++ LK++ + + D G GI D I+LDLGL DI G EV Sbjct: 6 ILVIEDDKTIQNFIKITLKTKGYRCVLADDGLTGISYFYANNPDLILLDLGLPDIDGMEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSRG 121 L +R + PV ++S ++KV L +GADDYI+KPFN EL+ARIR +R RS Sbjct: 66 LGQIR-QESEVPVIVVSARGMEQEKVGALDAGADDYITKPFNAGELLARIRVALRHRSSA 124 Query: 122 HAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q + D L ++ + + V V+G +HLT EY+M+ LL LT ++ Sbjct: 125 PRQEPVFELDTLKMDFEKRKVSVRGEEVHLTPIEYKMLSLLVNNSGKVLTHHYIQQEVWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + VF+ +R+K+ + +I T G GY E+ Sbjct: 185 YDTTDDYQSLRVFMANIRRKIEEDSTKPRFILTEVGVGYRFVES 228 >gi|218134762|ref|ZP_03463566.1| hypothetical protein BACPEC_02665 [Bacteroides pectinophilus ATCC 43243] gi|217990147|gb|EEC56158.1| hypothetical protein BACPEC_02665 [Bacteroides pectinophilus ATCC 43243] Length = 232 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++ EDD + + I + LK+ ++ GE I D I+LDLGL DI G EV Sbjct: 6 IMVAEDDGPVRNLITVTLKAHDYGYVTATTGEGAINTAASVNPDIILLDLGLPDIDGVEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R + RR Sbjct: 66 IERIRTWS-NVPIIVVSARSEDSDKIDALDAGADDYLTKPFSVEELLARLRVVERRLALM 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S ++ G L +N + + +HLT EY+++ LL+ LT + L + Sbjct: 125 QSSSLTGAVYENGGLVINYAQQCAYLNDTELHLTPIEYKLLCLLAHNTGKVLTHKYILQN 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E ++ + VF+ LRKKL++ YI+T G GY +++ Sbjct: 185 VWGSNLESDMGSLRVFMAMLRKKLNSGQNSPQYIQTHVGIGYRMQK 230 >gi|254196433|ref|ZP_04902857.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|169653176|gb|EDS85869.1| DNA-binding response regulator [Burkholderia pseudomallei S13] Length = 277 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 11/222 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP---G 59 ILL+EDD+ +A + LK++ V D +DG +A L L +P G Sbjct: 60 ILLVEDDRMIAEGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKRDG 116 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +VLR LR ++ PV IL+ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 117 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQ 176 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++S+I G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 177 SGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 236 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V+I LRKKL G + I V G GY++ Sbjct: 237 GWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 273 >gi|93005532|ref|YP_579969.1| two component heavy metal response transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92393210|gb|ABE74485.1| two component heavy metal response transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 238 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 128/229 (55%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M++LL+ED++ L I+ L F V Y+T G DG EF +++D+ L D+ Sbjct: 1 MKVLLVEDEQKLGEYIKKGLTEAGFIVDHYMT--GLDGYHALMTEEFSVVLMDVMLPDVS 58 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GFE+++ R A+ TPV L+ + D+++G++ G DDY++KPF EL+ RI++++RR Sbjct: 59 GFELIQRYRAAEKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRR 118 Query: 119 SR--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + ++I T DL +++ +TV I LT KE+ +++ R+ L + + + Sbjct: 119 ANQSDYKSTVIHTADLKMDIAKRTVYRGDTLIKLTAKEFALLQFFLERQGEVLPRTVIAS 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D + + +IDV I +LR K+ + K I TV G GY L A Sbjct: 179 QVWDINFDSDTNVIDVAIRRLRIKIDDGFDTK-LIHTVRGMGYRLEPLA 226 >gi|325521242|gb|EGD00125.1| two component heavy metal response transcriptional regulator [Burkholderia sp. TJI49] Length = 219 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRIL++ED+ + L YV D EDGI + E+D ++LD+ L Sbjct: 1 MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQ 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ +L+ LR +K STPV L+ + D+V+GL+ GADDY++KPF+ EL ARI++I+R Sbjct: 58 DGWTLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + + DL ++L + QG I LT KE+ ++ LL R+ L + + Sbjct: 117 RGQPRDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + ++D I +LR K+ +A K I TV G GYVL Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219 >gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264] gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264] Length = 224 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 129/227 (56%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++ +E+ LK E F+V+ G++G+ + K+ +D I+LD+ L + G E Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDLILLDVMLPKMSGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ I DK+ G GADDY++KPF+ EEL+ARI+A++RR++ Sbjct: 64 VCKRIREGS-QVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 + + DL +N V I L+ +E+++++ L L K L+++ L + Sbjct: 123 TVDHKGIFEFEDLKINYSTYEVFRGETLISLSKREFELLDFLVLNKGIVLSRDKILEEVW 182 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 Y G D I+D++I LR K+ K +I+TV G G++ + Sbjct: 183 GFDYIGND----NILDLYIKYLRDKVDKPYERK-FIQTVRGIGFIFK 224 >gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 233 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D I+L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAIDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRRYT 122 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +A + I D+ + DA +++ +G I LT +E+++ L+ +T+E Sbjct: 123 QPAQEADNAPNEITIKDIVIYPDAYSIKKRGKDIELTHREFELFHYLANHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|169335528|ref|ZP_02862721.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM 17244] gi|169258266|gb|EDS72232.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM 17244] Length = 235 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD A+ + I L+S+ + + G+ ++ + D I+LDLGL D+ G ++ Sbjct: 5 ILVVEDDNAVKNLISTTLESKEYKFHTAKNGKQALDEAISRKPDVILLDLGLPDMDGVDI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ +R + P+ ++S S +DK+ L +GADDY++KPF+ +EL+AR+R RR Sbjct: 65 IKKIR-GWSNMPIIVVSARSEDKDKIDALDAGADDYLTKPFSVDELLARLRVAFRRLDYQ 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + G L ++ ++ V V +HLT EY++I LLS LT + L Sbjct: 124 NSNYNKNESPIFINGGLKIDYESGCVFVDDKEVHLTPNEYKLICLLSKNVGKVLTHKYIL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 N ++ + +V + V++ LRKK+ N + YI+T G GY Sbjct: 184 NEIWGTAFDSDVASLRVYMATLRKKIENDSEHPIYIQTHIGVGY 227 >gi|116333280|ref|YP_794807.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098627|gb|ABJ63776.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 235 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 15/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ A+ ++ L+ ++ V GE + L +FD I+LDL L + G E Sbjct: 3 RVLVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEKFDVILLDLMLPKMDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K+ TP+ +++ +S D V GL+ GADDYI+KPF+ E++AR++A++RR Sbjct: 63 VTKRLRQEKVKTPIIMITAKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMRRYHE 122 Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 +GH + GDL+++ D V+ I LT KE++++ + R Sbjct: 123 EEPTDTVPSQQGHR---LQVGDLTIDQDKFQVKRGNQAIELTPKEFELLLFFAKRPGKVW 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E L ++ + +++D+ + LR+K+ ++TV G GY Sbjct: 180 SREQLLEGVWGFDYSGQTRMVDIHVSHLREKIEQDPKHPTLLKTVRGFGYTF 231 >gi|17231995|ref|NP_488543.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133639|dbj|BAB76202.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 253 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54 RIL++ED++ + + + L+ E + V G +E K ++ FD +ILDL L Sbjct: 23 RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFDPNGGDFPFDLVILDLML 82 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR P+ +LS S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 83 PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 142 Query: 115 IVRRSR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR R ++ D+++N V V+G ++L+ KE++++EL ++ Sbjct: 143 LLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWSR 202 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 203 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGY 250 >gi|296112289|ref|YP_003626227.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|295919983|gb|ADG60334.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|326561799|gb|EGE12134.1| osmolarity response regulator [Moraxella catarrhalis 7169] gi|326562259|gb|EGE12585.1| osmolarity response regulator [Moraxella catarrhalis 103P14B1] gi|326563236|gb|EGE13503.1| osmolarity response regulator [Moraxella catarrhalis 46P47B1] gi|326564762|gb|EGE14975.1| osmolarity response regulator [Moraxella catarrhalis 12P80B1] gi|326568975|gb|EGE19044.1| osmolarity response regulator [Moraxella catarrhalis BC1] gi|326569275|gb|EGE19336.1| osmolarity response regulator [Moraxella catarrhalis BC7] gi|326571952|gb|EGE21957.1| osmolarity response regulator [Moraxella catarrhalis BC8] gi|326575462|gb|EGE25387.1| osmolarity response regulator [Moraxella catarrhalis 101P30B1] gi|326576449|gb|EGE26357.1| osmolarity response regulator [Moraxella catarrhalis CO72] gi|326577920|gb|EGE27784.1| osmolarity response regulator [Moraxella catarrhalis O35E] Length = 244 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + + V V G+ +L F I+LDL L D G Sbjct: 11 RILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQMDKLIAREMFSLIVLDLMLPDEDGIA 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + LR S P+ +L+ S D++ GL++GADDY+ KPFN +EL+ARI+A++RR Sbjct: 71 ICKRLRAENSSIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQNR 130 Query: 121 ----GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +Q + V G +++L +T++ G+ + LT E+ +++ L LT++ Sbjct: 131 ELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 190 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +N L GR+ + + IDV + +LR+ + + YI+TVWG GYV Sbjct: 191 MN-LARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 237 >gi|289424086|ref|ZP_06425872.1| two-component response regulator [Peptostreptococcus anaerobius 653-L] gi|289155511|gb|EFD04190.1| two-component response regulator [Peptostreptococcus anaerobius 653-L] Length = 229 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 128/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K L ++ L S++F + GE+G+ L + +D +ILDL L ++ G Sbjct: 7 MKVLIVEDNKTLQADMKKEL-SKHFEIETCIDGEEGLYLIEQGIYDLVILDLMLPNMDGM 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +L+ R + I TP+ IL+ S++DK+ GA+DY++KPF +ELVAR AI+R + Sbjct: 66 TILKEARKSGIDTPILILTAKESLDDKMEAFTLGANDYLTKPFYMDELVARTFAILRTNG 125 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + DL ++ + K V + I L K+++++E L K + L KE + ++ Sbjct: 126 RIKDNKYLEFKDLKIDSEKKAVFIHDEEIELQNKQFKLLEYFVLNKGSILLKEQIYDRIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++I++V++ LRKKLS K YI+T GY+L Sbjct: 186 GIDSDATIEIVEVYVSNLRKKLSKFDYDK-YIKTKRKVGYIL 226 >gi|182627315|ref|ZP_02954997.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|177907260|gb|EDT70003.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 229 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + + +L+ E F V G +G +F++FD ++LDL L I G Sbjct: 7 ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R K +TP+ ++S +++EDK+ L+ GADD+ISKPF+ E++AR+ A++RRS+ Sbjct: 67 IEEIRKIK-NTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S I +L + ++ V+V G I LT KE++++ELL TK + Sbjct: 126 NSSEGVETIKYKNLILEPRSREVKVNGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I+V I LR K++ +YI+T+WG G+ Sbjct: 186 WKEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGF 226 >gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41] gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41] Length = 228 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD + + I + L++E G+E K + D IILD+ + + G + Sbjct: 4 KILVIDDDNDIRNLISVYLENEGMETIKVADAIKGLEFLKSNDVDLIILDIMMPKMDGIQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R K S P+ +LS S DK++GL SGADDY+SKPFN EL+AR+++ +RRS Sbjct: 64 ACLKIREEK-SMPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRSSK 122 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G+L +N D + V VQ I LT KE+ ++ELL+ K L+ + Sbjct: 123 YNVNMKNNKKIIEIGNLVINTDTRQVIVQEKEIRLTPKEFDILELLAYNKGIVLSIQKIY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I +R+K+ YI+TVWG GY Sbjct: 183 EAVWKEDYFKSDNTVMVHITNIREKIEQDPKHPIYIKTVWGVGY 226 >gi|160938728|ref|ZP_02086080.1| hypothetical protein CLOBOL_03623 [Clostridium bolteae ATCC BAA-613] gi|158438427|gb|EDP16186.1| hypothetical protein CLOBOL_03623 [Clostridium bolteae ATCC BAA-613] Length = 240 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK L +I+L L+ + G++ Y +D IILD L + G Sbjct: 13 MRILLVEDDKELCDAIKLQLERAGYETDCCGQGQEAFYYASEYPYDVIILDRMLPQMDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR I+TPV I + + I D++ GL +GADDY+ KP+ EL+ARIRA+ RR Sbjct: 73 GVLGGLRRMNITTPVIITTALDGINDRIDGLDAGADDYLVKPYAAGELLARIRALTRRPG 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 QS +++LD + E+ G + L+ +E ++E L K L + + L+++ Sbjct: 133 NFKQSPSAACS-NISLDPEKRELTGPLGTLQLSKRESALMEYLIRNKGQVLPRGLILSYI 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E +D +I LR++L + G I+TV G GY L Sbjct: 192 WGPDSDVEEGNLDNYIYFLRRRLK-SIGALPQIKTVHGIGYRL 233 >gi|160899237|ref|YP_001564819.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160364821|gb|ABX36434.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 227 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ AL + L V D G+ ++DA +LDLGL D+ G Sbjct: 1 MRILLAEDEHALGTWLSKALTQVGIQVEWVDNGKLADRRLATEDYDAAVLDLGLPDLSGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR P IL+ S++++VR L +GADD+++KPF EL AR+ A+VRR+R Sbjct: 61 VVLERLRARDQRLPALILTARDSVDERVRALNAGADDFLAKPFALAELEARLHALVRRAR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G L ++ K + G + L+ +EY ++ +L R TK+ + ++ Sbjct: 121 GSDHPRLACGPLVLDGVTKQFMLHGAPVPLSKREYSVLRVLIQRSGEPFTKKQIIERVFP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + ++ +VFI +LRKKL G + T+ G GY L +A + Sbjct: 181 EESDVHLEAAEVFIHRLRKKLE---GSGVSVVTLRGLGYALEIDAPKPS 226 >gi|107027025|ref|YP_624536.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691778|ref|YP_837311.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896399|gb|ABF79563.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116649778|gb|ABK10418.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 228 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRIL++ED+ + L YV D EDGI + E+D ++LD+ L Sbjct: 2 MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQ 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ +L+ LR +K STPV L+ + D+V+GL+ GADDY++KPF+ EL ARI++I+R Sbjct: 59 DGWTLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + + DL ++L + QG I LT KE+ ++ LL R+ L + + Sbjct: 118 RGQPRDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + ++D I +LR K+ +A K I TV G GYVL Sbjct: 178 VWDMNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 220 >gi|170736223|ref|YP_001777483.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|206562574|ref|YP_002233337.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|169818411|gb|ACA92993.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] gi|198038614|emb|CAR54574.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 227 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRIL++ED+ + L YV D EDGI + E+D ++LD+ L Sbjct: 1 MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQ 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ +L+ LR +K STPV L+ + D+V+GL+ GADDY++KPF+ EL ARI++I+R Sbjct: 58 DGWTLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + + DL ++L + QG I LT KE+ ++ LL R+ L + + Sbjct: 117 RGQPRDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + ++D I +LR K+ +A K I TV G GYVL Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219 >gi|308068960|ref|YP_003870565.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858239|gb|ADM70027.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 237 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 130/231 (56%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+D+K ++ ++L L E + V + G +G+E +D IILD+ L +I G EV Sbjct: 5 VLVIDDEKKISRLLQLELSHEGYAVEIAQTGREGLEKALAGTWDIIILDVMLPEINGVEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R TPV +++ ++ DKV GL GA+DYI+KPF EEL+AR+RA +R Sbjct: 65 LKQIRKVDNHTPVIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRHQMEP 124 Query: 123 AQSLIVTGDL--------SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +++ D S+ L+ KT V +G+RI LT KE+ ++ L KN L ++ Sbjct: 125 IATVLQEEDKPPSRLQVDSLVLERKTRLVMREGNRIELTPKEFDLLLYLMEHKNQVLQRD 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + ++DV+I +RKK+ + K I+TV G GY +RE Sbjct: 185 QMIQDVWGFDFVGDTNVVDVYIRYVRKKIDHGY-KKKLIKTVRGVGYCIRE 234 >gi|316934891|ref|YP_004109873.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315602605|gb|ADU45140.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 241 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 131/230 (56%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L+IEDD+ S + ++K+ ++ DL GE+G+ L + ++D +++D L Sbjct: 16 MRLLIIEDDR---ESADYLVKAFREVGHIADLAGDGEEGLALAESGDYDVLVVDRMLPKR 72 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G V+ +LR TPV ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + R Sbjct: 73 DGLSVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSR 132 Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R G A ++ GDL ++ + V G + L +E++++E L +T+ M L Sbjct: 133 RHGGPAEETSYRVGDLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLE 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++D +P+ +IDV I +LR K+ + + T+ G GY++R+ + Sbjct: 193 NVWDYHFDPQTNVIDVHISRLRGKIDKGF-DRPLLHTIRGAGYMIRDGLR 241 >gi|226312392|ref|YP_002772286.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095340|dbj|BAH43782.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 2/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ LA ++L L++E F+ + G G+E E+D I+LD+ L ++ G E+ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K P+ +++ + D V GL SGA+DY++KPF EEL ARIR ++R+ Sbjct: 73 CRRIRETK-DVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 A IV G L + +A+ V + I LT +E+ ++ + K +++E L ++ Sbjct: 132 ANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFD 191 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 I+DV+I LR K+ + K I TV G GY LR+ Sbjct: 192 FMGNTNIVDVYIRYLRNKIESDPSVK-LIHTVRGIGYTLRD 231 >gi|157162501|ref|YP_001459819.1| DNA-binding transcriptional regulator QseB [Escherichia coli HS] gi|157068181|gb|ABV07436.1| transcriptional regulatory protein QseB [Escherichia coli HS] Length = 219 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|317125629|ref|YP_004099741.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589717|gb|ADU49014.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 225 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L++E V G D + + D ++LD+ L + G E Sbjct: 4 RVLVVDDDLALAEMLGIVLRNEGLEVSHVADGTDAVAAFREARPDLVLLDVMLPGLDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ + D V GL+SGADDY+ KPF +EL+AR+RA +RR Sbjct: 64 VCRRIR-AESGVPIVMLTARTDTVDVVVGLESGADDYVVKPFKPQELIARVRARLRRGDE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ +V+ G + LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PAPEKLSIGDLDIDVAGHSVKRDGQPLSLTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + + TV G GY Sbjct: 183 RHAGDTRLVNVHVQRLRSKIEHDPEHPEIVVTVRGVGY 220 >gi|325675782|ref|ZP_08155466.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325553753|gb|EGD23431.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 218 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 7/220 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ ++ SI L++E + V G + C+ + D ++LD+ L G EV Sbjct: 1 MLVVDDEHTISESIAARLRAEGYAVRTAFDGPSAVTECEAFGPDLVVLDVMLPGFDGLEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 R ++ ++ + PV +L+ + D V GL GADDY+ KPF+ LVARI A++RR+ R Sbjct: 61 CRRIQASR-AVPVLMLTARADETDLVIGLGVGADDYLGKPFSMRVLVARISALLRRADRT 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++V GD+S++L A+ V G +HLT E+ ++ L+ R + +E+ L ++ Sbjct: 120 TDSDVLVLGDVSIDLSARLVRSAGIEVHLTRTEFDLLAHLASRPRAAIAREILLEQVWGW 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + +D + LR+KL G + I TV G GY L Sbjct: 180 GDGASSRTVDSHVKALRRKL-----GGDVIRTVHGVGYAL 214 >gi|269140794|ref|YP_003297495.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Edwardsiella tarda EIB202] gi|267986455|gb|ACY86284.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Edwardsiella tarda EIB202] gi|304560554|gb|ADM43218.1| Copper-sensing two-component system response regulator CpxR [Edwardsiella tarda FL6-60] Length = 232 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L E F V V GE + + D ++LD+ + G + Sbjct: 3 KILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLD-ASIDLLLLDVMMPKKNGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q ++ L +N + G + LTG E+ ++ LL+ +++E Sbjct: 121 NEQQQNSDSGAPILQVDRLQLNPGRQEASFDGQPLELTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G+ + +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGQPWFKTLRGRGYLM 228 >gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402] gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402] Length = 235 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ L+ E + + GE +EL F I+LD+ L + G + Sbjct: 4 KILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSENFHCILLDIMLPGMDGIQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR K STPV +L+ ++V G + GADDYI KPF+ E+V R++AI+RRS+ Sbjct: 64 VCKRLREEK-STPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAILRRSQS 122 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 HA+ LIV L ++ DA V ++LT KEY+++ L+ + +E Sbjct: 123 TMFLQQEAHAKDLIVFDSLVIDNDAHRVLADNKEVNLTPKEYELLLFLAKSPDKVFDREQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219 L ++ +++ +D + +LR+KL+ + N I TVWG GY Sbjct: 183 LLKDVWHYEFYGDLRTVDTHVKRLREKLNKVSPHAANMIHTVWGVGY 229 >gi|254787304|ref|YP_003074733.1| RstA family transcriptional regulator [Teredinibacter turnerae T7901] gi|237683805|gb|ACR11069.1| transcriptional regulatory protein RstA [Teredinibacter turnerae T7901] Length = 238 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 133/228 (58%), Gaps = 10/228 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD +LA I L + V V + G+ +EL + D ++LD+ L + GF+V Sbjct: 15 ILVVEDDTSLAEWISDYLIDNGYQVTVANRGDTAVELIRSDTPDLVLLDIMLPEKDGFQV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R R A S P+ +++ S D++ GL+ GA+DY++KP L+ARI+A++RR+ Sbjct: 75 CREAR-AFYSKPILMMTACSEDADEILGLELGANDYVNKPVKPRILLARIKALLRRTEMD 133 Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL--- 178 A ++ GDL ++ +K+V++Q + I + E++++ LL+ ++++ ++ L Sbjct: 134 AAGHRLIFGDLVLDKKSKSVKLQNNTIPFSSNEFEVLWLLAESAGQVISRDDLVSKLRGI 193 Query: 179 -YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 YDG D + +DV +C++RKKLS+ I+T+ G+GY+ +A Sbjct: 194 EYDGFD----RSVDVRVCRIRKKLSDDPSNPAKIKTIRGKGYLFAGDA 237 >gi|237731111|ref|ZP_04561592.1| DNA-binding transcriptional regulator PhoP [Citrobacter sp. 30_2] gi|226906650|gb|EEH92568.1| DNA-binding transcriptional regulator PhoP [Citrobacter sp. 30_2] Length = 224 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 2 MRVLVVEDNALLRHHLKVQLQDLGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++S P+ +L+ +DKV L +GADDY++KPF+ EE+ AR++A++R Sbjct: 59 DGLSLIRRWRSNEVSLPILVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALMR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 119 RNSGLASQIISLPPFQVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPDDVITTVRGQGYLF 221 >gi|206560046|ref|YP_002230810.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|198036087|emb|CAR51982.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 221 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M ILL+EDD LA ++ L + + D+ + L +++DA++LDL L G Sbjct: 1 MHILLVEDDVMLADAVRAGLAQNGWRADWSADVPAARLALVG-HDYDAVLLDLQLPGASG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F +L A+R +TPV I++ + D++RGL +GADDY+ KPF +EL AR+RA+ RRS Sbjct: 60 FTLLAAMRANYDATPVLIVTARDQLSDRIRGLDAGADDYLVKPFQLDELYARLRALTRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G +V D+ V+ + V G + L+ EY+ + L R+ +T+ +Y Sbjct: 120 QGRVSERLVCRDVHVDPARREVTRAGEPVALSIHEYRTLLALMERQGRVVTRAQLEERVY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I V+I +LR+KL G I TV G GY + E Sbjct: 180 GNDGAIESNTIAVYIHQLRRKL-----GDELIVTVHGFGYRIGEG 219 >gi|160897159|ref|YP_001562741.1| two component heavy metal response transcriptional regulator [Delftia acidovorans SPH-1] gi|160362743|gb|ABX34356.1| two component heavy metal response transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 227 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+ L + L E F V G G+ +FD IILD L I G Sbjct: 1 MRILIIEDDEKLVDQLVRGLDDEGFTVDFALDGISGLNKAATQDFDVIILDGMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL ALR +K T V +L+ S+ED+V GL+SGADDY+ KPF ELVARI+ ++RR Sbjct: 61 AVLAALRQSK-QTAVLMLTARDSVEDRVTGLKSGADDYMVKPFAFSELVARIKVLLRRNP 119 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + +++ DL ++L + G ++ L+ KEY ++ LL R+ +++ Sbjct: 120 SLSSAVNVATILRMHDLEIDLARQRAFRAGKKLDLSAKEYSLLILLIRRQGEVISRAELA 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ E E +++V I +LR K+ + K + T+ G GY+L Sbjct: 180 SQVWSINFESESNVVEVAIRRLRMKI-DEPFDKPLLHTIRGMGYIL 224 >gi|254253958|ref|ZP_04947275.1| Response regulator [Burkholderia dolosa AUO158] gi|124898603|gb|EAY70446.1| Response regulator [Burkholderia dolosa AUO158] Length = 393 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 132/228 (57%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + ++ L E + V GEDG +++D ++LD+ L + GF Sbjct: 163 MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 222 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ ++D+VRGL+ GADDY++KPF+ EL+ R+RA+ RR+R Sbjct: 223 GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 281 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT +E+Q++ +L+ R L+K ++D Sbjct: 282 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 341 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + +++ I +LR KL K + T+ G GYVL A+D+ Sbjct: 342 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVL--EARDD 386 >gi|91794808|ref|YP_564459.1| response regulator receiver [Shewanella denitrificans OS217] gi|91716810|gb|ABE56736.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 226 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLI+DD L+ + +L+ E F++ G+ G++ EFD I+LD+ L + GF+ Sbjct: 3 RILLIDDDHGLSELLAQLLELEGFSLTQAYDGQQGLDNALKQEFDLILLDVMLPKLNGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ALR K TPV +L+ D+V GL+ GADDY+ KPFN ELVARIRAI+RR++ Sbjct: 63 LLKALRQHK-QTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILRRAQK 121 Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + GD+ ++ + V + I LTG E+ ++ L + ++KE + Sbjct: 122 PANEPRDELKCGDIKLDPARQEVSCKEQLILLTGTEFSLLHALIKQAGELVSKETLSETV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + P + +D+ + LRKK A G+ ++T+ G+GY+ Sbjct: 182 LHKKLMPFDRSLDMHLSNLRKKFPERADGRPRVKTIRGQGYI 223 >gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 235 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 128/230 (55%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ I+ L E ++V G++ +++ D ++LD L ++ G E Sbjct: 3 KVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R +K PV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R + Sbjct: 63 VLRQIR-SKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKS 121 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +Q+ I GDL ++ A V G I LT +E+Q++ L+ +T+E Sbjct: 122 VSQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFQLLYYLAQHMGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + N++ T G GY LR Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLR 231 >gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM 15176] gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM 15176] Length = 271 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I L+ F G + + D +ILD+ + + G Sbjct: 47 KILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGGIDLVILDIMMPFMDGMT 106 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR +R KI TPV +L+ S DK+ GL+ GADDY+ KPF+ ELVAR++A++ R+ Sbjct: 107 CLREMRTRKIMTPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLARTMP 166 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +QS V GDLS++ + TV+V G LT KE+ ++ L K L++E L + Sbjct: 167 RTEDSQSSYVFGDLSIDTASHTVKVAGQEAPLTPKEFDLLVFLVSNKGIALSREKILQKV 226 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + +D I LR L +NYI TVWG GY Sbjct: 227 WNYDYYGEDRTVDTHIKMLRGHLGPC---RNYIVTVWGIGY 264 >gi|210616118|ref|ZP_03290951.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787] gi|210149938|gb|EEA80947.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787] Length = 226 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILLIEDD+ +A SI+ L+ E F + V + +EL K +F +ILD+ L D GF Sbjct: 2 IRILLIEDDEHIAQSIQFFLEGEGFQIKVAAMARQAMELLKSEDFQLVILDVTLPDGNGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ ++ A+ PV L+ + E+ V+G + GAD+YI+KPF EL++RIR ++R + Sbjct: 62 ELFEEIK-ARKELPVIFLTALDGEEEIVKGFELGADEYITKPFRPRELLSRIRNVIRHTG 120 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + I + +NL+ V RI LT EY+++ L K LT+ L+ + Sbjct: 121 ILEENRQEIQIEHVKMNLEQGAVYKNNERIELTALEYKILALFFENKGRILTRGQILSGI 180 Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +D + + V+I +LR+K+ I+TV G GY Sbjct: 181 WDESGNFVNNNTLTVYIKRLREKIEEDPNAPKIIKTVRGMGY 222 >gi|254451168|ref|ZP_05064605.1| two-component transcriptional regulator, winged helix family [Octadecabacter antarcticus 238] gi|198265574|gb|EDY89844.1| two-component transcriptional regulator, winged helix family [Octadecabacter antarcticus 238] Length = 221 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A I +L+SE + + GEDG E + A ILD+GL + G Sbjct: 1 MRILIVEDEARIADLIADVLQSEGYIAEIASDGEDGWEKGGTESYSAAILDIGLPRMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R ++ PV +LS SS ++V G+ +GADDY+ KPF EEL+AR+RA++RR+ Sbjct: 61 SVLRNWRKEGVNFPVMLLSAKSSWNERVEGIDAGADDYMVKPFQMEELLARLRALLRRTS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G L ++L + ++G RI +T E++++ L K + + + ++Y Sbjct: 121 TQKMTALSVGGLQLDLLQMRITLEGRRIKVTPLEFRLLSYLLHHKGEVVAQSVLAENIYF 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 EP+ I+V I +LR+KL G + IET G GYV+ E Sbjct: 181 RDQEPDSNAIEVLIGRLRRKL-----GSDLIETKRGFGYVIAE 218 >gi|170768311|ref|ZP_02902764.1| DNA-binding response regulator PhoP [Escherichia albertii TW07627] gi|170123077|gb|EDS92008.1| DNA-binding response regulator PhoP [Escherichia albertii TW07627] Length = 223 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ ++ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S P+ +L+ S +DKV L +GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHEVITTVRGQGYLF 220 >gi|92118761|ref|YP_578490.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801655|gb|ABE64030.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 224 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED + LA + L++ + + V D + A+ILDLGL D G Sbjct: 1 MRVLIVEDSEELADLLAKGLQAAGYEIDVLANVSDAYSGLGTTRYAALILDLGLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR K P+ +L+ +ED+V GL+SGADDY+ KPF +ELVAR+ A++RR Sbjct: 61 SILRELRHRKDPIPILVLTARGGVEDRVNGLRSGADDYLVKPFAFDELVARLEALLRRPG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + +++ + + + V V +L+ +E ++ELL RK + ++K++ + ++ Sbjct: 121 QLLGSSLRLSNVTFDTEGRQVFVDMKPQNLSAREIAVLELLMRRKGSVVSKKLLEDQIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++V++ +LRK+L + G K I T+ G GYV+ E+ Sbjct: 181 LTGDVASNAVEVYVHRLRKQLLD-IGAKVRITTIRGVGYVMMES 223 >gi|319652093|ref|ZP_08006213.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2] gi|317396241|gb|EFV76959.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 11/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ ED+ A++ + L+ E F V G +E + +ILD+ + + G+ Sbjct: 3 KILVAEDELAISRVLSAYLQREGFEVLTAYDGTSALEKFFSHSPQLVILDIMMPGMDGWS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL +R K + PV +L+ + I+ K++GL +GADDYISKPF +E++AR+ A++RRS Sbjct: 63 VLEKIR-EKSACPVIMLTALGDIDYKLKGLNTGADDYISKPFIGDEVIARVNAVLRRSAN 121 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 + +I G L++N DA T+ + G I LT ++ ++ L+ R N T T++ + H+ Sbjct: 122 VYTDEHIIQYGSLTINFDAHTIFLNGKEISLTPRDLSLLLFLAERPNRTFTRDQLIEHVW 181 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 YDG D + +D+ + ++R+ L++ + I T+ G GY Sbjct: 182 GMDYDGSD----RAVDLAVKRIRQALTDWPETEGEIRTLRGMGY 221 >gi|49081878|gb|AAT50339.1| PA0756 [synthetic construct] Length = 224 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 121/230 (52%), Gaps = 10/230 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRILL+ED LA S+ LK + V DL +DG+ E+ ILD+GL + Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTV---DLLQDGVAADLALASEEYALAILDVGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEVL LR + PV +L+ ++D+V GL GADDY++KPF EL AR++A++R Sbjct: 58 DGFEVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS + L G L +L + + + LT +E ++E + R ++KE Sbjct: 118 RSVLGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +E I++++ +LRKKL GG I T G GY LRE D Sbjct: 178 VFGLDEEASADAIEIYVHRLRKKLE---GGAVRIVTFRGLGY-LREAQGD 223 >gi|325263927|ref|ZP_08130660.1| DNA-binding response regulator DltR [Clostridium sp. D5] gi|324030965|gb|EGB92247.1| DNA-binding response regulator DltR [Clostridium sp. D5] Length = 227 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 115/208 (55%), Gaps = 12/208 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 MR+L+IED+ LA I+ + EN+ ++ GEDG +Y+ +D ++LD L Sbjct: 1 MRVLIIEDEAGLADVIKAEFEDENYEADISGDGEDG-----YYQGLTDIYDVVVLDGMLP 55 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G++VLR R I TPV +L+ S + DK++GL +GADDY++KPF EEL+AR R I Sbjct: 56 SMDGYDVLRKWRAEGIETPVIMLTARSELSDKLKGLDTGADDYLTKPFEMEELLARARVI 115 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 RR GD+S++L + Q G + L KE+Q++E L + +T+E Sbjct: 116 TRRQGKMETERPGFGDISLDLRTCILYNQDSGAEVQLGKKEFQILEYLIKNSSQIVTREQ 175 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL 201 + L+ E ++V+I R+K+ Sbjct: 176 IVQKLWGYDCNAEYNNVEVYISFTRRKM 203 >gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus PHEA-2] Length = 240 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL IED+ A+ + L+ E +NV + G ++ FD IILD+GL D+ GFE Sbjct: 6 QILCIEDEAAIVLPLRYALEREGWNVSWANTGTQALQYLSEQAFDFIILDIGLPDLNGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K TP+ L+ D+V GL+ GADDY +KPF+ E+VARI+AI RR Sbjct: 66 VCKQLR-QKSQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEV 124 Query: 122 HAQS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 QS + + S N + ++ G + LT EY+++ LL Sbjct: 125 QIQSNSSQNPISQAAIVAPSSIWSCNPQSLQIQYHGKSLQLTRYEYRLLFLLIQHPEQVF 184 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ ++H+++ + + +D I LR+KL + I T G GY L Sbjct: 185 SRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDNDPIRTHRGFGYSL 236 >gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 233 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G++ + + + D +ILDL L +I G E Sbjct: 3 KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAESPDILILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R + P+ +LS + DKV GL+ GADDY++KPF+ EL AR++A++RR Sbjct: 63 VARTIRKTS-NVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRTEL 121 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + S IV GDL + D + +G + LT +E++++ L+ +T+E Sbjct: 122 TVESQTESTSDSDIVIGDLKIIPDTFLAQKKGKELELTHREFELLYHLATHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + G YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDIPGRPEYILTRRGVGYYMRNN 232 >gi|157375111|ref|YP_001473711.1| two component transcriptional regulator, winged helix family protein [Shewanella sediminis HAW-EB3] gi|157317485|gb|ABV36583.1| two component transcriptional regulator, winged helix family protein [Shewanella sediminis HAW-EB3] Length = 223 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + +LL+EDD LA ++ L+ E+ G G+ L + ++ IILDL L + G Sbjct: 2 LNLLLVEDDIDLATAVIEYLEMESIQCDSAYNGLTGMNLIENNDYQVIILDLNLPKMDGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R TPV +L+ S+ DKV G +G DDY+ KPF EEL+ RI+A+ R Sbjct: 62 EVCKKMRELGDDTPVLMLTARDSLNDKVAGFNAGTDDYLVKPFAMEELIVRIKALSLRRS 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +L V GDL+V+L K G + L+ ++++E+L + +++E + L+ Sbjct: 122 GQINNLSV-GDLTVDLVRKIAVRGGRELKLSPSSFKLLEILMRQSPMPVSREHLMQGLW- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 G D+P+ + V I KLRK+L A + TV G G+ +RE+ Sbjct: 180 GDDQPDSNSLKVHIYKLRKELETNADTP-LLHTVTGHGFSIRES 222 >gi|70725032|ref|YP_251946.1| hypothetical protein SH0031 [Staphylococcus haemolyticus JCSC1435] gi|68445756|dbj|BAE03340.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 231 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 114/202 (56%), Gaps = 3/202 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+A+ H I++ L + V G++ + + D I+LDLGL DI G + Sbjct: 5 LLVVEDDEAILHLIDVALTMNYYKVVTAKTGKEADFRLRTEQPDIILLDLGLPDIDGLSL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ R + TP+ ++S + + V L GA+DY++KPFN +EL ARIR +R SR Sbjct: 65 IQQFR-DFVDTPIIVISARTEEQTIVEALDRGANDYMTKPFNIDELRARIRVALRMSRST 123 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS G L+++ DAK+V V +HLT E+Q++ +LS LT ++ L LY Sbjct: 124 ETIQSRFTNGPLTIDFDAKSVLVNEQSVHLTPNEFQLLTILSHHVGKVLTYQVLLKSLYG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLS 202 + E+ + V + LRKKL+ Sbjct: 184 YVNHTEMAALRVHMASLRKKLN 205 >gi|323700473|ref|ZP_08112385.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. ND132] gi|323460405|gb|EGB16270.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans ND132] Length = 236 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 16/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLI+DD LA ++ L E + G G+E+ + +++ +ILD+ L D GF V Sbjct: 4 LLLIDDDPELAEMLQAYLGGEGLGLDAAVSGSAGLEMARKGDYELVILDVMLPDTSGFNV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR A PV +L+G D+V GL+ GADDY+SKPF EL+ARIRA++RR Sbjct: 64 LTKLR-AVSGVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFQLRELLARIRAVLRRYGSG 122 Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A+ I G++ +N +A+ + + G +HLT E+ ++E+L+L + + Sbjct: 123 AEEAGDMAAVKAKPGIEIGEVHLNRNARNMTIGGLPVHLTSTEFDILEMLALNMGNVVDR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ + +++V + LRKKL I+T+ GRGY+L Sbjct: 183 VSLMEKALGRNEDFDDYVLNVHMSNLRKKLDRNVS----IKTIRGRGYLL 228 >gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 244 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 129/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L+ + + L++E ++ G++ + + + + D ++LD+ + + G Sbjct: 20 IRVLVVDDEANLSDLLRMALQNEGWDARTAANGQEALNVIREFGPDLLVLDIMMPGLDGM 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+L +R A PV L+ ++ED++ G+ +GADDY++KPFN EE+V R+R + RR Sbjct: 80 ELLTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVVVRLRGMARRHV 139 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + A + GDLS++ ++ VE G I LT KE++++ L L+K L+ Sbjct: 140 AAIADADPRLRVGDLSLDEESYEVERGGIPIKLTAKEFELLRYLMQNPRRVLSKAQILDQ 199 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +++++I LRKK+ + G+ I TV G GY ++ + Sbjct: 200 VWSYDFGGNGSVVEIYISYLRKKIDSL--GEPLIHTVRGVGYTIKAS 244 >gi|312968636|ref|ZP_07782845.1| transcriptional regulatory protein qseB [Escherichia coli 2362-75] gi|312286854|gb|EFR14765.1| transcriptional regulatory protein qseB [Escherichia coli 2362-75] Length = 219 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F++ G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSQMGFSIDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|255655846|ref|ZP_05401255.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296450875|ref|ZP_06892624.1| response regulator [Clostridium difficile NAP08] gi|296879124|ref|ZP_06903119.1| response regulator [Clostridium difficile NAP07] gi|296260247|gb|EFH07093.1| response regulator [Clostridium difficile NAP08] gi|296429667|gb|EFH15519.1| response regulator [Clostridium difficile NAP07] Length = 232 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDDK + I L +++++V G++GI + Y D ++LDLGL D+ G EV Sbjct: 6 ILLVEDDKTIRKFISTALLTQDYDVKEAITGKEGISIAVSYSPDVVLLDLGLEDMDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++A+R + P+ ++S DKV +GADDY++KPF+ EL+AR+R R S+ Sbjct: 66 IKAIRQFS-NIPIIVVSAREQDRDKVEVFDAGADDYLTKPFSIVELLARVRVAFRHSQVE 124 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q S L ++ D + V V +HLT EY ++ LL+ LT + Sbjct: 125 VQQKDDVKSTFEVDKLLIDFDKRKVIVDDIEVHLTPIEYNILSLLAKHHGKVLTHNFIIK 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E K + VF+ LR+K+ YI T G GY L + Sbjct: 185 EIWGSVIGNETKSLRVFMATLRRKIEKQPANPRYIITEVGVGYRLND 231 >gi|149279260|ref|ZP_01885392.1| two-component system response regulator [Pedobacter sp. BAL39] gi|149230022|gb|EDM35409.1| two-component system response regulator [Pedobacter sp. BAL39] Length = 249 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +I + EDD +A I L+ + ++V V+ G+ ++ +F +ILD+ + + G Sbjct: 25 FKIGIAEDDVKIAGLIRSGLEEQGYDVTVSTNGQVALQTFLDNDFQLLILDVMMPGMSGV 84 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R+LR + P+ +L+ + SI+DKV GL SGADDY+ KPF+ +EL+ARI A++RR + Sbjct: 85 EICRSLRQQQREMPILMLTALGSIDDKVTGLSSGADDYLLKPFHFKELLARIEALLRRHK 144 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A L+ D+S++ +K V G I LT KEY ++EL N L+++ Sbjct: 145 KEAVVQEDHLLRFDDISLDTYSKEVSRAGQPISLTAKEYLLLELFLRNPNRLLSRQYIAE 204 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D + +IDV++ LR K+ K I T G GY+L+ Sbjct: 205 RVWDVNFDTGTNVIDVYMNFLRNKIEKGFDRK-LIHTKIGMGYILK 249 >gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp. hominis C80] gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp. hominis C80] Length = 233 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYA 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ V DA +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQESEGTTNEIAIKDIVVYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|111021968|ref|YP_704940.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821498|gb|ABG96782.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 238 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 9/219 (4%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S+E L+ F V G D + + DA++LD+ + I G V+ ALR P Sbjct: 21 SLERGLRLSGFTVLTAVDGADALRVVSERRPDAMVLDMNMPVIDGTGVVTALRAMNNDIP 80 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSL 126 +C+LS +++D++ GL+SGADDY+ KPF EL+ARIRA++RR + A Sbjct: 81 ICVLSARDTVDDRISGLESGADDYLVKPFVLAELIARIRAMLRRHGTTAAAPAGSPATPP 140 Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186 I G L + A+ V + G + LT +E++++E+L+ L++E L ++ + Sbjct: 141 IRVGALEIRTSARRVFMAGEEVTLTKREFELLEVLARNVGIVLSRERLLELVWGYDFVAD 200 Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++DVF+ LR+K G + TV G G+VLRE + Sbjct: 201 TNVVDVFVGYLRRKF-EVGGQPRILYTVRGVGFVLREPS 238 >gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 230 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLI+DD L + LKSE F V GE G++ + ++LD+ L I G + Sbjct: 3 QILLIDDDIELTSLLTDYLKSEGFEVEAVHNGEQGLQKALSGNYSIVVLDIMLPGISGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR + PV +L+ D++ GL+ GADDY+ KPFN EL+ARI+AI+RR +G Sbjct: 63 VLRRLR-PQSRIPVLLLTARGEDVDRIVGLELGADDYVPKPFNTRELLARIQAILRRVQG 121 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ GD++++ A+TV+ G ++ T E+ ++ L + +E + Sbjct: 122 GQTPGAIVNVGDVTLDPGARTVQRGGQKLDFTSVEFDLLRYLLENAGNVVPREELAERVL 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 R P + ID+ I K+R+KL + + I+TV G GY+ Sbjct: 182 GRRFSPFDRSIDMHISKIRRKLLDES--DELIKTVRGTGYI 220 >gi|318080665|ref|ZP_07987997.1| two component system response regulator [Streptomyces sp. SA3_actF] Length = 253 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + + G + + + DA++LD+ L D+ G Sbjct: 19 VRVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGL 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R + TPV L+ + D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+ Sbjct: 79 SVLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAG 138 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S++ GDL ++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 139 AGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRV 198 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++++I LR+K+ G + I T G GY+++ Sbjct: 199 WSYDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLIK 240 >gi|310642323|ref|YP_003947081.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309247273|gb|ADO56840.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 226 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 5/219 (2%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGFEVLR 64 +ED++++ I + LK F V G + + L + D +LD+ + + GFEV R Sbjct: 1 MEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMDGFEVCR 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-- 122 +R + L+ +DKV L GADD++SKPF+ EL+ARI++++RR H Sbjct: 61 RIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVNVHRE 120 Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ +G +++L AK + G I LT E+ +I+ ++NT L++++ L+H++ Sbjct: 121 TAAKVSFQSGPFTLDLIAKQFKKNGQLIELTPTEFSLIQFFLEKENTPLSRDVLLDHVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + KI+DV I +LR+K+ N +++TVWG GY Sbjct: 181 KEYMGDPKIVDVNIRRLRQKIENNPSEPAFLQTVWGHGY 219 >gi|302520395|ref|ZP_07272737.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302429290|gb|EFL01106.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 256 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + + G + + + DA++LD+ L D+ G Sbjct: 22 VRVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGL 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R + TPV L+ + D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+ Sbjct: 82 SVLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAG 141 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S++ GDL ++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 142 AGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++++I LR+K+ G + I T G GY+++ Sbjct: 202 WSYDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLIK 243 >gi|255523159|ref|ZP_05390131.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255513274|gb|EET89542.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 262 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILLI+D+ L +E +LK E F + G DGI+ CK D ++LD+ + DI GF Sbjct: 32 KILLIDDEIELLKLMETVLKKEGFRRISKAANGTDGIKTCKIENPDIVVLDVMMPDIDGF 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + +R P+ LS S DK+ L GADDY++KPF+ +E+ RI+A +RR+ Sbjct: 92 DVCKRIREFSF-VPIIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 150 Query: 121 GHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 L V GD+ ++ V G I LT KEY ++ ++ N LTK+M Sbjct: 151 YIKNELSVKEEKISFGDIVIDFQNGEVLKLGENIVLTPKEYHLLRYMAQNANQILTKQMI 210 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++D E I V + KLR+KL YI TV G GY LR Sbjct: 211 CNEVWDDDYEGYDNTIMVHMRKLRQKLEKDPSNPEYIITVKGLGYKLR 258 >gi|227485677|ref|ZP_03915993.1| two component response regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236349|gb|EEI86364.1| two component response regulator [Anaerococcus lactolyticus ATCC 51172] Length = 226 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 124/228 (54%), Gaps = 11/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV--YVTDL---GEDGIELCKFYEFDAIILDLGLT 55 M++L++ED+ L SI +E + YVTD G+D I++ +D IILD+ L Sbjct: 1 MKVLIVEDELDLLDSI-----AEGLTLMGYVTDKASNGDDAIDMAFVESYDLIILDVNLP 55 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 GFEVLR++R + +L+ S IED+V+GL GA DY+ KPF +EL AR+R+ Sbjct: 56 GKDGFEVLRSIRQFNKEIAIIMLTARSDIEDRVKGLDLGASDYMVKPFALKELDARMRSH 115 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +R + H ++I LS + + G I LT KE ++E L L ++ E + Sbjct: 116 LRGKKIHQSTVINMSGLSFDTIKREASYGGKIIPLTVKETGILEYLFLNSERFISAEELI 175 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 H++D + + V + LRKKL +A GKN IE V G+GY + E Sbjct: 176 EHVWDSNADGFSNTVRVHMSSLRKKLRSAC-GKNLIENVIGKGYRIHE 222 >gi|187925552|ref|YP_001897194.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716746|gb|ACD17970.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 242 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 118/228 (51%), Gaps = 12/228 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59 IL+++DD + + L+ F V D ++G+ L + + + I+LD+ + ++ G Sbjct: 5 ILVVDDDPVVRELVSGYLQGRGFKV---DTLQNGLALQRRLQDERPALIVLDIMMPELDG 61 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 LRALRVA PV +L+ S D+V GL+ GADDY+ KPF ELVARIR ++RR Sbjct: 62 ISALRALRVAGDDIPVILLTARSDPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S ++ G VN A+ + G RI L E+ M+++ T LT+ Sbjct: 122 GTIAPSAPEHRAPYRFGRFEVNFPARELRRDGERISLRSSEFAMLKVFVSHAMTVLTRAQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L L+ + + +DV I +LR+ + Y++TVWGRGYV Sbjct: 182 LLEKLHGNSEVHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229 >gi|312140596|ref|YP_004007932.1| two component system response regulator [Rhodococcus equi 103S] gi|311889935|emb|CBH49252.1| putative two component system response regulator [Rhodococcus equi 103S] Length = 218 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 7/220 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ ++ SI L++E + V G + C+ + D ++LD+ L G EV Sbjct: 1 MLVVDDEHTISESIAARLRAEGYAVRTAFDGPSAVTECETFGPDLVVLDVMLPGFDGLEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 R ++ ++ + PV +L+ + D V GL GADDY+ KPF+ LVARI A++RR+ R Sbjct: 61 CRRIQASR-AVPVLMLTARADETDLVIGLGVGADDYLGKPFSMRVLVARISALLRRADRT 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++V GD+S++L A+ V G +HLT E+ ++ L+ R + +E+ L ++ Sbjct: 120 TDSDVLVLGDVSIDLSARLVRSAGIEVHLTRTEFDLLAHLASRPRAAIAREILLEQVWGW 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + +D + LR+KL G + I TV G GY L Sbjct: 180 GDGASSRTVDSHVKALRRKL-----GGDVIRTVHGVGYAL 214 >gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 229 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 128/228 (56%), Gaps = 5/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + L+ E + V V D G DG+ + + D ++LDL L + G E Sbjct: 3 RILIVEDEESFSDPLSYSLRKEGYEVAVADNGIDGLRIFSAHGADLVLLDLMLPGMSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R S PV +L+ DKV GL+ GADDY++KP++ EL+ARI+A++RR Sbjct: 63 VCREIRRTS-SVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVLRRRHD 121 Query: 121 -GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A+ + + L ++++ VEV+G + L KE++++E+L + LT+ ++ Sbjct: 122 SGEAEDDAPLRAAHLMMDVERHVVEVRGQEVALPLKEFELLEMLLRNVDRVLTRGQLIDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + K +DV + +LR K+ + ++ TV G GY A Sbjct: 182 VWGANYVGDTKTLDVHVKRLRAKIEDDPRNPVHLVTVRGLGYKFESGA 229 >gi|223936641|ref|ZP_03628552.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223894805|gb|EEF61255.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 230 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD +A +E +LKSE++ V + + G+ +E I+LD+ L + G++ Sbjct: 4 RILIIEDDPHIALGLEEVLKSESYEVALCNRGDKAMEAFNRLHPALIVLDVMLPGLSGYD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 V + LR KI+TP+ +L+ DKV GL GADDY++KPF EL+ARI+A++RR + Sbjct: 64 VCKQLRAKKINTPILMLTAKGQEIDKVIGLDLGADDYVTKPFGVRELLARIQALLRRIEK 123 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIH--LTGKEYQMIELLSLRKNTTLTKEMF 174 A+S+ GD ++ D +T E++ ++ LT +E ++++L L+++ Sbjct: 124 PAAESIGKESFTIGDATI--DPRTFELRRGKVQEELTARELKLLQLFHGHPGEVLSRDRL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LN ++ + +D I +LRKKL + ++ TV G GY Sbjct: 182 LNDVWGYGYYGTTRTLDQVIVQLRKKLGDNGAEPKHLVTVHGVGY 226 >gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 237 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 132/239 (55%), Gaps = 16/239 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E + V GE+ ++ + D I+LD+ L G E Sbjct: 4 RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR--- 119 Query: 122 HAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 HAQ+ IV G L + DA V+ +G I LT +E++++ L+ +T Sbjct: 120 HAQTANQEEGENETNEIVIGPLVIRPDAYIVQKRGETIELTHREFELLHYLAKHIGQVMT 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +E L ++ +V+ +DV + +LR+K+ + N+I T G GY LR N + E+ Sbjct: 180 REHLLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLR-NPEQES 237 >gi|167035384|ref|YP_001670615.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166861872|gb|ABZ00280.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 223 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ L LKS V V G E+ +LD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVALALKSHGLTVDVLHDGVAADLALASEEYAVAVLDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRGRGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGPLVYDLDTRRFTLGADNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+++I +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GHPVAIVTFRGLGYLL 218 >gi|124025854|ref|YP_001014970.1| two-component response regulator, phosphate [Prochlorococcus marinus str. NATL1A] gi|112818640|gb|ABI23443.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123960922|gb|ABM75705.1| two-component response regulator, phosphate [Prochlorococcus marinus str. NATL1A] Length = 245 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 19/233 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA------IILDLGLT 55 R+L++EDDK++ ++ L +E + V V G++ E F +FD I+LDL L Sbjct: 14 RLLIVEDDKSIRETLREALVAEGYQVEVCKTGDEA-EARVFSQFDTRKKIDLIVLDLMLP 72 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 ++ G E+ R +R I TP+ I+S S D+V GL+ GADDY+ KPF EL+AR RAI Sbjct: 73 NLNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAI 132 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEV--QGHR-------IHLTGKEYQMIELLSLRKN 166 +RRS + + T DLS L K + + Q +R I+L KEY+++EL Sbjct: 133 LRRSETNHEK---TQDLSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPK 189 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ L ++ + K +DV I +R+K+ + A +YI TV G GY Sbjct: 190 RVWSRDQLLEQIWGIDYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGY 242 >gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 230 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+++ + L+ F+V + G +G++ + E+D +ILD+ L + G+E Sbjct: 3 KILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRIRDGEYDLLILDIMLPGMNGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L+ +R K PV I+S DK+ GL+ GADDYI+KPF+ ELVAR+ A + + Sbjct: 63 ILKKIRDEK-DIPVLIVSAKKEEFDKIHGLKLGADDYITKPFSPGELVARVNAHIAKYER 121 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + S+ + G L + D++ V V G ++L KE+ ++ L+ N ++E Sbjct: 122 LRNKYGNNNVNSITIRG-LEIQKDSRRVFVNGKEVNLAQKEFDVLLFLAQNPNRVFSREE 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + + V I ++R+K+ + YIETVWG GY LR Sbjct: 181 IFDRVWGMDALGDAATVTVHIGRIREKIESDPSNPQYIETVWGAGYRLR 229 >gi|315178867|gb|ADT85781.1| transcriptional regulator CpxR [Vibrio furnissii NCTC 11218] Length = 228 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD L ++ +L E F V + GE G+ D I+LD+ + + G E Sbjct: 4 ILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAGLHAVN-DSVDLILLDVMMPKLNGMET 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR K TP +L+ D+V GL+ GADDY+ KPF+ EL+ARIRAI+RR+ H Sbjct: 63 LKKLR-EKWQTPALMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTGNH 121 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 QS +I DL + + QG + LT E+ ++ TLTKEM + Sbjct: 122 TQSKPTDMIECQDLQLYPGKQEAYCQGQLLDLTTTEFALLTHFVQNPGETLTKEMLSLDV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R + ID+ + LRKKL + GK I+T+ GRGY++ Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERSDGKPRIKTLRGRGYLM 224 >gi|332559743|ref|ZP_08414065.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|332277455|gb|EGJ22770.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 228 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L++E V +G + +ILDLGL D G E Sbjct: 6 RILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGTDRAALDAPTLVILDLGLPDGDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120 VLR +R PV +LS S KV L +GA DY++KPF E +ARIRA++R RS Sbjct: 66 VLRTVR-GWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A S+I +L ++L A+ V V G + LT +E+ ++ LL+ + +T+ M L ++ Sbjct: 125 PAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIWG 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + + + V+I +LR KL + A +I T G GY R+ Sbjct: 185 PAHEEDSQYLRVYIRQLRAKLGDDAADPRWIFTEPGIGYRFRDR 228 >gi|318060761|ref|ZP_07979484.1| two component system response regulator [Streptomyces sp. SA3_actG] Length = 256 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + + G + + + DA++LD+ L D+ G Sbjct: 22 VRVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGL 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R + TPV L+ + D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+ Sbjct: 82 SVLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAG 141 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S++ GDL ++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 142 AGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++++I LR+K+ G + I T G GY+++ Sbjct: 202 WSYDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLIK 243 >gi|300785941|ref|YP_003766232.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299795455|gb|ADJ45830.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 218 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ LA + L+ F V V G ++ C +D ++LD L + G Sbjct: 1 MRVLLVEDEQPLAKYVAAGLRKHGFAVDVAFDGRTALDKCTVTPYDVVVLDRDLPVVHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R L + V +L+ ++ED+V GL GADDY+ KPF ELVAR+RA+ RRS Sbjct: 61 AVCREL-AGHGTARVLMLTASGTVEDRVEGLTLGADDYLGKPFAFSELVARVRALSRRST 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G + ++ +T E G +HLT KE+ ++E L ++ E L+ ++D Sbjct: 120 PAMPPVLRAGGVVLDPARRTAERAGRLLHLTPKEFGVLEHLLAADGAVVSAETLLDKVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P + + + LR+KL G IETV GY Sbjct: 180 EHADPFTNAVRITVGTLRRKL----GDPPPIETVPSAGY 214 >gi|229017208|ref|ZP_04174118.1| Two-component response regulator vanR [Bacillus cereus AH1273] gi|229023385|ref|ZP_04179889.1| Two-component response regulator vanR [Bacillus cereus AH1272] gi|228737946|gb|EEL88438.1| Two-component response regulator vanR [Bacillus cereus AH1272] gi|228744088|gb|EEL94180.1| Two-component response regulator vanR [Bacillus cereus AH1273] Length = 247 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I + L+ E F V+ D GE+ +E+ + ILD+ + + G E+ Sbjct: 21 ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 80 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 81 CRRIR-EKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G I+LT EY ++ L+++ +N T E Sbjct: 140 NQNTVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILCLMAVTRNRVFTMEEIY 199 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 243 >gi|215488353|ref|YP_002330784.1| DNA-binding transcriptional regulator QseB [Escherichia coli O127:H6 str. E2348/69] gi|331684666|ref|ZP_08385258.1| transcriptional regulatory protein QseB [Escherichia coli H299] gi|215266425|emb|CAS10863.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O127:H6 str. E2348/69] gi|331078281|gb|EGI49487.1| transcriptional regulatory protein QseB [Escherichia coli H299] gi|332086683|gb|EGI91823.1| transcriptional regulatory protein qseB [Shigella boydii 5216-82] Length = 219 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F++ G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSIDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|150019401|ref|YP_001311655.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905866|gb|ABR36699.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 228 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A + L+ + V + G G++ +D II+DL L G+E Sbjct: 3 QILIIEDDINIAELEKEYLQLNGYKVEIIQDGIQGLKKALIGTYDLIIVDLMLPGKDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 ++R +R K P+ I+S S DK++GL GADDY++KPF+ ELVARI++ + R Sbjct: 63 IVREVR-EKYEIPIIIVSARSEDIDKIKGLGFGADDYLTKPFSPAELVARIKSHMLRYER 121 Query: 119 -SRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S Q ++I L + D+ V V G + LT KEY+++ L+ N TK+ + Sbjct: 122 LSGNRPQLNIISHKALEIRTDSHKVFVNGKEVILTTKEYELMVFLASNPNIVFTKDQLFD 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I KLRKK+ G YIET+WG GY Sbjct: 182 RIWGEDYYGDTATVAVHIQKLRKKIEKDPGNPEYIETLWGTGY 224 >gi|262373678|ref|ZP_06066956.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311431|gb|EEY92517.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 254 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 15/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 RIL+++DD L ++ L+ + F V D ++ + + F I+LD L Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGF---VVKTAHDATQMDRLLQRELFSLIVLDFMLPVED 78 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 79 GLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + ++ G S++L +T+ +G + LT E+ +++ L LT+ Sbjct: 139 QVREVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTR 198 Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +N L GR+ + + IDV + +LR+ + + YI+TVWG GYV Sbjct: 199 DKLMN-LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVF 248 >gi|238762221|ref|ZP_04623193.1| Two-component response regulator of virulence determinant [Yersinia kristensenii ATCC 33638] gi|238699568|gb|EEP92313.1| Two-component response regulator of virulence determinant [Yersinia kristensenii ATCC 33638] Length = 223 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + ++ V D ED E F + D I+DLGL Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + + P+ +L+ S +DKV L++GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + V +I LT EY +IE L ++K+ + Sbjct: 118 RNIGLASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LY + E IDV + +LRKK+ G+ I T+ G+GY N Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKMQAKHEGE-VITTIRGQGYRFDAN 223 >gi|229099550|ref|ZP_04230478.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|229118615|ref|ZP_04247967.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228664807|gb|EEL20297.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228683846|gb|EEL37796.1| DNA-binding response regulator [Bacillus cereus Rock3-29] Length = 220 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 5/220 (2%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +I+++++ A I L E + + G+ + ++D IILD I G E+ R Sbjct: 1 MIKNERSSAKKIVSGLTQEGYFILKLHNENQGLNIIYEQDWDIIILDWDSLSISGPEICR 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---RG 121 +R+ K +TP+ I++ S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS + Sbjct: 61 QIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDYIQQ 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 NEMNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D++I +RKKL + YI+T+ GRGY + Sbjct: 180 NVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSM 218 >gi|26249595|ref|NP_755635.1| DNA-binding transcriptional regulator QseB [Escherichia coli CFT073] gi|227887735|ref|ZP_04005540.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972] gi|300973288|ref|ZP_07172127.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301048153|ref|ZP_07195190.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|26110003|gb|AAN82208.1|AE016766_296 Transcriptional Regulatory protein qseB [Escherichia coli CFT073] gi|227835131|gb|EEJ45597.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972] gi|300299989|gb|EFJ56374.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300410868|gb|EFJ94406.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|307555121|gb|ADN47896.1| transcriptional regulatory protein QseB [Escherichia coli ABU 83972] gi|315295065|gb|EFU54402.1| response regulator receiver domain protein [Escherichia coli MS 153-1] Length = 219 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFRVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|333025862|ref|ZP_08453926.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332745714|gb|EGJ76155.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 240 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + + L+ E + + G + + + DA++LD+ L D+ G Sbjct: 6 VRVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R + TPV L+ + D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+ Sbjct: 66 SVLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAG 125 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S++ GDL ++ D+ V G IHLT E++++ L L+K L+ + Sbjct: 126 AGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +++++I LR+K+ G + I T G GY+++ Sbjct: 186 WSYDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLIK 227 >gi|312877424|ref|ZP_07737388.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311795813|gb|EFR12178.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 217 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 131/219 (59%), Gaps = 8/219 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ L I+L L+ E F V G + IE + + +ILD+ L G+ Sbjct: 1 MKILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R K TPV +L+ +DK+ G + GADDY+ KP + +E+VAR++AI++R++ Sbjct: 61 SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I L ++ A+ V V+G +I+LT KEY+++ L R+N L++E LN ++ Sbjct: 120 KPNSNDI----LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG 175 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ +D I LR+KL + ++YI+TV G GY Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGDL---RDYIKTVRGYGY 211 >gi|283471296|emb|CAQ50507.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus subsp. aureus ST398] Length = 231 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD A+ H +++ L + +NV D + + D I+LDLGL D G Sbjct: 4 KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLC 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R P+ ++S + ++ L +GA+DY++KPFN +EL ARIR I R ++ Sbjct: 64 LISEIR-QHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H ++ + G LS++ +K+V + +HLT E+ ++ELLS K LT EM L +Y Sbjct: 123 HQETNFVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIY 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219 ++ E+ + V + LR+KLS K+ I+T GY Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGY 223 >gi|182440678|ref|YP_001828397.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469194|dbj|BAG23714.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 224 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L I L+ F V + L +D ++LD + Sbjct: 1 MRVLLVEDDDDLRDVIAAGLRDGGFAVDCASDWPEADVLLHLSAYDCVVLDRMVPSGDTL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L R A S PV L+ + S+++++RGL+SGADDY++KPF+ ELV R+R + RR+ Sbjct: 61 APLEGRRRAGWSVPVLCLTALDSLDERLRGLESGADDYLAKPFSMRELVLRVRGLSRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + D+ +++ V G + L+ KEY +++ L + ++T +T+ L H +D Sbjct: 121 ARLPSFLGCADVVMDVARHEVRRGGVLLSLSPKEYAVLQQLLVHRDTVVTRTGLLEHCWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P ++D + LR+KL G + TV G+G++L + Sbjct: 181 EMADPVSNVVDAVVAGLRRKL----GSPGLVHTVRGQGFLLSAD 220 >gi|219847488|ref|YP_002461921.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541747|gb|ACL23485.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 226 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDDK LA IE +L+ E V V GE G+++ +D ++D L G Sbjct: 1 MRILIVEDDKRLARLIERVLREERHTVDVAHDGESGLDMLLQGVYDVAVIDWMLPGRDGP 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + RA R A++ T + +L+ IEDK+ G +SGADDY+ KPF EEL+AR+RA+ RR Sbjct: 61 SLCRAARAARLPTALLLLTARGQIEDKMLGFESGADDYLVKPFAFEELLARVRALGRRFN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G + ++L + T R+ LT E++++E L TLT++ L++++ Sbjct: 121 PNLGNDELRIGTIVLDLRSYTARRGERRLDLTPTEWRLLEYLMRNAGQTLTRQQILDYVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++DV++ LR+KL NA G + I TV G GY L Sbjct: 181 SFEHDVQPQMVDVYVSYLRRKL-NAPGEADPIVTVRGIGYRL 221 >gi|186477526|ref|YP_001858996.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184193985|gb|ACC71950.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 248 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 12/211 (5%) Query: 20 LKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPGFEVLRALRVAKISTPVC 76 L+ F V V E+G+ L + + + ++LD+ + ++ G LRALR+A S PV Sbjct: 22 LQGRGFTVSVL---ENGMALQQALQLERPALVVLDIMMPELDGISALRALRLAGDSIPVI 78 Query: 77 ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA------QSLIVTG 130 +L+ + + D+V GL+ GADDY+ KPF+ ELVARIR+++RR A ++ G Sbjct: 79 LLTARADVIDRVIGLELGADDYLGKPFDPSELVARIRSVLRRRESAAPGAPENRAPYRFG 138 Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190 VN A+ + G RI L E+ M+++ T LT+ L L+ D + + Sbjct: 139 RFEVNFPARELRRDGERIALRSSEFAMLKVFVSHAMTVLTRAQLLEKLHGSTDTHRNRSL 198 Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DV I +LR+ + Y++TVWG+GYV Sbjct: 199 DVSIWRLRRLIEVDPSEPRYVQTVWGKGYVF 229 >gi|294628412|ref|ZP_06706972.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] gi|292831745|gb|EFF90094.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] Length = 249 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++DD LA + L+ + + V + G + + DA++LD+ L D G Sbjct: 22 VRVLVVDDDPDLAEVLSGALRYQGWEVRTAEDGASAVAEARALRPDAVVLDVMLPDTDGL 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR L + V +L+ ++ED++ G+ +G DDY++KPF+ EE++AR+R ++RR+ Sbjct: 82 TVLRRLHEVRPDVCVLLLTARDAVEDRIAGITAGGDDYVTKPFSLEEVIARLRGLLRRAG 141 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + GDL ++ DA+ V G I L+ EY+++ L L+K L+ Sbjct: 142 MARQPADGPRLTVGDLVMDEDAREVTRAGELIELSPTEYELLRFLMRNPRRVLSKTQILD 201 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +++++I LRKK+ AG + I TV G GYVL+ Sbjct: 202 RVWSYDFGGRAHVVELYISYLRKKVD--AGREPMIHTVRGAGYVLKP 246 >gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 239 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 5/219 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60 +L+++DD ALA + ++L E ++V T G+ G L F D ++LD+ L G Sbjct: 16 VLVVDDDSALAEMLGIVLTKEGWSV--TTCGDGGRALTAFRAVNPDLVLLDVMLPGKDGM 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R A+ P+ +L+ + D V GL++GADDY+ KPF +EL+AR RA +RR Sbjct: 74 SVCREIR-AESGVPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRRYT 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + GDL++++ + V+ QG I LT E+ ++ L+ + L++E L ++ Sbjct: 133 PPQQAQLAVGDLTIDVQSHIVQRQGEIIPLTPLEFDLLVALARKPMQVLSRETLLEQVWG 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++++V + +LR K+ + ++TV G GY Sbjct: 193 YQHAGDTRLVNVHVQRLRAKIESDPENPTIVQTVRGVGY 231 >gi|254517943|ref|ZP_05129999.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Clostridium sp. 7_2_43FAA] gi|226911692|gb|EEH96893.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Clostridium sp. 7_2_43FAA] Length = 227 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 132/226 (58%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDDK++ + LK+E + + ++ + D I+LDL L D GF+ Sbjct: 4 QVLIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNLPDGSGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + AK + P+ IL+ + + DKV GL+ GADDYI+KPF+ +E+ +RI+A+ RR Sbjct: 64 FCKDIN-AKYTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRIEK 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + + + ++ +N + +TV I L KEY+++E +N ++E ++ Sbjct: 123 SASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSREQLID 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ + +++ +D+ I ++R KL + G + IETV+G GY++R Sbjct: 183 NIWEFSYDGDIRTVDIHIRRIRSKL-DTNGHPSVIETVFGVGYMMR 227 >gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279] gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279] Length = 237 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 122/236 (51%), Gaps = 21/236 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + + + L++E ++V + G D L EFD +LD+ L D+ GFE Sbjct: 5 RILVVDDEKTITDLVGIYLRNEGYDVTLAYTGADAARLILEQEFDLAVLDIMLPDVDGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR +R + + PV +L+ S DK+ GL GADDY+ KPF ELVAR +A +RR Sbjct: 65 LLRTIRTER-TYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRRYTS 123 Query: 122 H-----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + A +I LS+N DA+TV V + T EY ++ L+ + + Sbjct: 124 YGTREQSVAAEDAGPIIAFNGLSINKDARTVTVDEKPVRCTPLEYSILLYLAEHRGCVVP 183 Query: 171 KEMFLNHLYD-----GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++D G + + V I LR+KL + A +I+ +WG GY + Sbjct: 184 VEELFRAVWDEEFMAGSN----NTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTI 235 >gi|38234503|ref|NP_940270.1| putative two component system response regulator protein [Corynebacterium diphtheriae NCTC 13129] gi|38200766|emb|CAE50470.1| Putative two component system response regulator protein [Corynebacterium diphtheriae] Length = 236 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ LK + F V G + +E + ++ DA ILD+ + + G+E Sbjct: 10 RVLVVDDEPNIVELLKVSLKFQGFEVETAQSGIEALEKARSFQPDAFILDVMMPGMDGYE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR PV L+ ++E ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 70 LLPKLRADGFEGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGLR 129 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H + +V DL++N D V G + L+ E+ ++ L L L+K LN+ Sbjct: 130 HDDVDDSATLVYADLTLNDDTHEVTKAGQVVELSPTEFNLLRYLMLNAEVVLSKSKILNN 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +++ +I LR+K+ I+TV G GYVLR+ Sbjct: 190 VWHYDFGGDGNVVESYISYLRRKVDTQEPA--LIQTVRGVGYVLRK 233 >gi|254248501|ref|ZP_04941821.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124875002|gb|EAY64992.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 231 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + ++ L E + V GEDG +++D ++LD+ L + GF Sbjct: 1 MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV L+ ++D+VRGL+ GADDY++KPF+ EL+ R+RA+ RR+R Sbjct: 61 GVLRALRAQK-QTPVIKLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT +E+Q++ +L+ R L+K ++D Sbjct: 120 VQESTLISIGDLRVDLIGRRASRDGARLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++ I +LR KL K + T+ G GYVL Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVL 219 >gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1] gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 244 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 12/229 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A+ + L L+ E + V G+DG+ + +DA+ILDL L + G E Sbjct: 6 RILIVEDDADIANVLALHLRDERYEVVHCANGDDGLRRLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR Sbjct: 66 ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVEA 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVE--VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +R A + V G + LD T E V G I LT +E+ ++ + ++ Sbjct: 126 LSRDTRAEAGRVEVGG---LRLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRT 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN ++ + E ++ I +LR K+ I TVWGRGY L Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKL 231 >gi|70731532|ref|YP_261273.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68345831|gb|AAY93437.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 225 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+ EDD+ +A I L ++ V + +FD ++LDLGL D G Sbjct: 1 MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMLGVADFDVMVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ R + PV IL+ S+ D+V GLQ+GADDY+ KPF+ EL AR+ ++RR Sbjct: 61 KLLKQQRQQGLEIPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +LI G L+ + + + G + L+ +E +++ L + L+ E + +Y Sbjct: 121 GRSVNLIEHGRLTYDPSTRETLLGGQPVDLSRREQSLLQALLHNRGRVLSSEQLKDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL N +ETV G GY L Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216 >gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 223 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 9/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD+ L ++ L+ F V T G++ +E K +D IILDL L G Sbjct: 1 MVVLLVEDDEDLGELLKYNLEKNQFKVDWTLDGKEALEKIKTNSYDLIILDLMLPGASGL 60 Query: 61 EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 ++ + +R I+ PV +L+ +S + KV+G GADDY++KPF+ +EL+ARI A++RR Sbjct: 61 DICKEIRENSINKDVPVIVLTALSDEDTKVKGFSIGADDYVTKPFSMKELLARIEAVLRR 120 Query: 119 SRGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G+ + I+ D + + +K+V V G+ I+LT E+Q++E ++E L Sbjct: 121 A-GYVRKAILEFDGIVYDKRSKSVTVDGNSIYLTKTEFQLLEFFLEHPEQLFSREELLEK 179 Query: 178 LYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ G D E + +DV+I +LRKKL + Y++T+ GY L Sbjct: 180 IW-GHDHNETTRTVDVYISRLRKKLGDKG---KYLKTLPRLGYKL 220 >gi|258515908|ref|YP_003192130.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779613|gb|ACV63507.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 228 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 12/226 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 RIL+IEDD H EL N + D+ +DG++ K +D II+DL L Sbjct: 3 RILIIEDD---LHIAELERDYLQLNGFKADIVQDGVQGLKKALPGNYDVIIVDLMLPGKD 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+E++R +R K+ PV ++S +K+RGL+ GADDY++KPF+ ELVARI++ +RR Sbjct: 60 GYEIIREIR-EKLDVPVVVVSAKDEDVNKIRGLEYGADDYLTKPFSPGELVARIKSHIRR 118 Query: 119 SR----GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H S +I+ L +N + V + G ++ +T +EY+++ L+ +KE Sbjct: 119 YERLKGNHVPSEVIIHRGLEINTASHRVYLNGQQVQMTTREYELLLFLASNPGIVFSKEH 178 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ + + V I K+RKK+ +IET+WG GY Sbjct: 179 ILVSIWGDDYFGDTATVAVHIQKIRKKIEKDPSNPEFIETLWGTGY 224 >gi|227539981|ref|ZP_03970030.1| possible response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227240259|gb|EEI90274.1| possible response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 226 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD +A IE ++ + F + G G +L ++F II D+ L I G Sbjct: 1 MDILIIEDDLRVAELIERAVQEQGFQTMLAYDGMSGKKLALQHDFSLIITDIILPKIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++ + +R K P+ +L+ + + ++KV G +GADDY+ KPF EL+ARIRA+++R Sbjct: 61 DLCKEVRQLKPDLPIIMLTALGTTDNKVEGFDAGADDYLVKPFEMRELIARIRALLKRKD 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S A ++ DL +NL+ K V+ G I LT KE+ +++ L++ H Sbjct: 121 QSASVASFVLKYHDLEMNLNTKMVKRAGIEIELTPKEFNLLQYFLSHPEKVLSRSDIAEH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + IDV+I LRKK+ K I T G G++LR Sbjct: 181 VWETHFDTGTNFIDVYINYLRKKIDKGFDHK-LIHTKPGMGFILR 224 >gi|86607675|ref|YP_476437.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556217|gb|ABD01174.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 230 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 1/221 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ LA +E L E + V V G G+ D ++LD L I G E+ Sbjct: 11 ILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLEI 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR PV +++ + D+ GL +GADDY+ KPF+ +EL++RIR +R+ R Sbjct: 71 CRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRRS 130 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 +V DL ++ + V ++ LT KEY ++ L LT++ L H++ Sbjct: 131 RDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGCD 190 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + II+V+I LR K+ G K I+TV G GYVLR+ Sbjct: 191 FTGDSNIIEVYIRYLRLKI-EGPGEKRLIQTVRGVGYVLRD 230 >gi|94313390|ref|YP_586599.1| two component heavy metal response transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] gi|93357242|gb|ABF11330.1| two component heavy metal response transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] Length = 206 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 118/207 (57%), Gaps = 7/207 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL++ED+ + + +LK + +V DL DG++ + +D I+LD+ L + Sbjct: 1 MRILIVEDE---PKAGDYLLKGLTESGFVADLARDGVDGLAHAREQHYDLIVLDVMLPGM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++VLR LR K TPV L+ + D+++GL+ GADDY+ KPF ELVARIR I+R Sbjct: 58 DGWQVLRELRRDK-DTPVLCLTARDELSDRLKGLELGADDYMVKPFAFAELVARIRTILR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R I DL ++ + V G +I LT KE+ +++LL+ R+ L++ + + Sbjct: 117 RGPLRESEFIEVADLQIDTIRRRVTRAGQKIDLTSKEFALLQLLARRRGEVLSRSLIASQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNA 204 ++D + ++DV I +LR K+ + Sbjct: 177 VWDMNFDSNTNVVDVSIRRLRAKVDDP 203 >gi|331090774|ref|ZP_08339621.1| hypothetical protein HMPREF9477_00264 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399882|gb|EGG79541.1| hypothetical protein HMPREF9477_00264 [Lachnospiraceae bacterium 2_1_46FAA] Length = 233 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDKA+ I L+++ + + G GI + D ++LDLGL D+ G +V Sbjct: 6 ILVVDDDKAIRSLITTTLETQEYRYHAVSNGMQGILEVASQKPDVLLLDLGLPDMDGIKV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 ++ +R + + P+ ++S S +DK++ L GADDY++KPF+ +E++ARIR ++RR R Sbjct: 66 IQKVR-SWSNVPIIVISSRSEDKDKIQALDLGADDYLTKPFSIDEILARIRVVLRRERCM 124 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ + G+L +N A ++ +HLT EY+++ LLS LT Sbjct: 125 IYANPEEAEFINGELRINYVAGCAYLKERELHLTPIEYKLLVLLSKNVGKVLTHTYLTRE 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +V + VF+ LRKK+ YI+T G GY Sbjct: 185 IWGNSWESDVASLRVFMAALRKKIEENPQNPQYIQTHVGIGY 226 >gi|312792501|ref|YP_004025424.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179641|gb|ADQ39811.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 217 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 131/219 (59%), Gaps = 8/219 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ L I+L L+ E F V G + IE + + +ILD+ L G+ Sbjct: 1 MKILLIEDEEKLRKIIKLYLEKEGFEVEEVSDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R K TPV +L+ +DK+ G + GADDY+ KP + +E+VAR++AI++R++ Sbjct: 61 SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I L ++ A+ V V+G +I+LT KEY+++ L R+N L++E LN ++ Sbjct: 120 KPNSNDI----LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG 175 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ +D I LR+KL + ++YI+TV G GY Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGDL---RDYIKTVRGYGY 211 >gi|295680605|ref|YP_003609179.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295440500|gb|ADG19668.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 224 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+L++EDD + S+ L+ ++V +V D G G E+ ++LDLGL + G Sbjct: 1 MRVLIVEDDLQIGQSLLRALQDAEYSVDWVRD-GNAGSAAIAAVEYTLVLLDLGLPGMGG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+L+A R P+ IL+ ++ +V+GL GADDY+ KPF+ EL+ARIRA++RR Sbjct: 60 IELLKAAREKGSKVPILILTARDDLDARVQGLDFGADDYVLKPFHLPELLARIRAVLRRR 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A S + L+++LD +T+ G L+ +E+ ++ R T L+++ LY Sbjct: 120 AGFASSRLGNDTLNLDLDKRTLCCNGVSSVLSAREFALMFAFLERPGTILSRDQLEGKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E +DV I +RKK G++ I V G G+ + Sbjct: 180 GWGKEVESNAVDVLIHGVRKKF-----GQSVIRNVRGLGWTV 216 >gi|257064074|ref|YP_003143746.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256791727|gb|ACV22397.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 225 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD +A + L+SE F V G G ++ +DAI LD+ L G+ Sbjct: 1 MRVLIVEDDPNIAEYLRKSLESEGFTTDVAYDGPTGFDMALANPYDAITLDIILPGKNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR + ++TP+ +L+ D+ +GADD++ KPF+ L+AR+RA+VRR Sbjct: 61 TVCKELRDSGVTTPILMLTAKDGEYDEADAFDTGADDFLRKPFSLVVLLARLRALVRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ DL ++ K V G I LT +E+ ++ELL + L K++ L ++ Sbjct: 121 VAKGSVLKASDLMLDTRTKRVTRAGREIELTPREFALLELLLMNAGNALPKQLLLERVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + +++V+I LR+K+ +A K I TV G GY + ++ + Sbjct: 181 YAILADENVVEVYISYLRRKV-DAPFDKKLIRTVRGVGYCIDKDPE 225 >gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15] gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15] Length = 237 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L ++ +ILD + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDFMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S AQ +L G L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNNTAQEKTTLSFKG-LTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKT 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 182 QLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228 >gi|222112594|ref|YP_002554858.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|221732038|gb|ACM34858.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 223 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L + + + V G L + +FDA++LDLGL + G Sbjct: 1 MRILVVEDEPTLCAQLVQAIAAAGHTVEHASDGAQAHYLGEVEDFDAVVLDLGLPVLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A + PV IL+ S+ +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 SVLRRWRAAGRNMPVLILTARSAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G + ++ V V G + LT E++++ LL RK L + + H+Y Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGQPLTLTSHEFKLLSLLMQRKGQVLPRTLLSEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ +LRKKL + IETV G GY L Sbjct: 181 HDSDRDSNTIEVFVGRLRKKLPPGS-----IETVRGLGYRL 216 >gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 236 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 129/227 (56%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E ++V+ G + ++ + + D I+LD+ L G E Sbjct: 6 KILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVEDIQPDLILLDIMLPQKDGME 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 66 VCREIR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 124 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + S I G L+++ DA TV +G I LT +E++++ L+ +T+E L Sbjct: 125 RQEQDVKEMSEIKIGPLTIHPDAYTVSKRGEHIELTHREFELLHYLAKHIGQVMTREHLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV + +LR+K+ + +I T G GY LR Sbjct: 185 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLR 231 >gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 226 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ L + L+ E++ D G D ++ + D +ILD+ + + GF V Sbjct: 6 VLVVDDEPELLELVVTYLRKESYRALTADNGADALKRIEQDAVDLVILDVMMEGMDGFHV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 +R K S PV +L+ + DKVRGL++GADDY+ KPF+ +EL+AR+ A +RR+ Sbjct: 66 CERIR-QKHSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRRANMD 124 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RG +V G+L ++ D + V V G I LT +EY+++ L+ ++E Sbjct: 125 KIRGRR---LVFGELELDQDGRAVTVAGSLISLTRREYELLLFLAENAGRAFSREHLFER 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ +D I LR KL N AG +IETVWG GY Sbjct: 182 VWTDTAASSLRTVDTHIKTLRLKL-NGAG--RFIETVWGVGY 220 >gi|169829969|ref|YP_001700127.1| response regulator [Lysinibacillus sphaericus C3-41] gi|168994457|gb|ACA41997.1| Response regulator [Lysinibacillus sphaericus C3-41] Length = 225 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL EDD L +I +L+ E +V D G D ++ FD +ILD + + G Sbjct: 1 MKILLAEDDARLRKNIVYILRKEFHHVIEVDNGLDALDHTFSESFDLLILDWMMPQLSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR S + +L+ D ++GL SGADDY+ KPF EEL+ARIRA++RR Sbjct: 61 EVCKQLRDTGFSGGILMLTAKDDTSDIIQGLDSGADDYLVKPFKMEELLARIRAVLRRKE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I +L +N+D++ I LT E+ ++E L + K LT+E +++ Sbjct: 121 KVIEQVIQVENLQLNIDSRVFLRDNTEIELTKNEFALLEFLFINKGHVLTREQICIYIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +D + +RKK+ + + K++I+ V G GY LR+ Sbjct: 181 YDFDVSNNSLDALVKLVRKKI-DTSHEKSHIQNVRGIGYKLRD 222 >gi|168185598|ref|ZP_02620233.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] gi|169296235|gb|EDS78368.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] Length = 234 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A+ I L + ++V + G++G+E + E+D IILD+ L +I GF Sbjct: 4 KILVIEDDIEIANIIRSHLTRQEYSVNWSSTGKEGLEDFRKDEYDLIILDIMLPEIDGFA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R+ + P+ ILS DKV+GL+ GADDYI+KPF+ EL AR+ ++R + Sbjct: 64 VCKNIRLLS-NVPILILSAKKQEVDKVKGLKLGADDYITKPFSLVELEARVANNIKRYKY 122 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + L++ D V + +I LT KE+ ++ +L+ +N TK+ Sbjct: 123 YNEKTSNNNIWKYKNGLTIIKDEMKVLIDNEKIELTAKEFSLLIVLAQNENKVFTKKELY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + I V + +LR+KL + YI+TVWG GY Sbjct: 183 ENVWNQDNLEGNNTITVHVKELRQKLKDNVKNPKYIQTVWGTGY 226 >gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1] gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1] Length = 222 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ + ++ L+ + V G G+ + D +ILDLGL D G E Sbjct: 4 RILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGLPDFDGAE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S P+ IL+ M +I+ KV L++GADDY++KPF+ EELVAR++ +R + Sbjct: 64 VARRLRKTS-SVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQ- 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H + +I G L ++ + GH + L+ KE+ ++ L+ + +++ +++G Sbjct: 122 HGE-VITIGALEIHPQKRLCSYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++DV + +R KL + G I TV G GY L+ Sbjct: 181 ELPSNSNVVDVHMANMRAKLRD-LDGYGVIRTVRGIGYALK 220 >gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 223 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E K+ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--KWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 119 KKKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|326781352|ref|ZP_08240617.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326661685|gb|EGE46531.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 224 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L I L+ F V + L +D ++LD + Sbjct: 1 MRVLLVEDDDDLRDVIAAGLRDGGFAVDCASDWPEADVLLHLSAYDCVVLDRMVPSGDTL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L R A S PV L+ + S+++++RGL+SGADDY++KPF+ ELV R+R + RR+ Sbjct: 61 APLEGRRRAGWSVPVLCLTALDSLDERLRGLESGADDYLAKPFSMRELVLRVRGLSRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + D+ +++ V G + L+ KEY +++ L + ++T +T+ L H +D Sbjct: 121 ARLPSFLGCADVVMDVARHEVRRGGVLLSLSPKEYAVLQQLLVHRDTVVTRTGLLEHCWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P ++D + LR+KL G + TV G+G++L + Sbjct: 181 EMADPVSNVVDAVVAGLRRKL----GSPGLVHTVRGQGFLLSAD 220 >gi|295102996|emb|CBL00540.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 233 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 129/231 (55%), Gaps = 9/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +L+I+DDK L ++ ++ EN + V G +G+ L + + + IILD+ + D+ GF Sbjct: 4 VLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTYSLIILDVMMPDMNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +VL+ +R K + PV +L+ S EDKV GL+ GADDY++KPF EL+AR+ +++RR Sbjct: 64 QVLQKIR-EKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELIARVNSLIRRYT 122 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G+ + ++ D+ ++ +TV VQ + LTGKE+ ++ L+ K TK+ Sbjct: 123 TLNPVTGNEAATMLLRDMVIDKINRTVMVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + + FI KLRKK+ YI+TV G GY + A Sbjct: 183 YTQVWTEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFNKEA 233 >gi|295102319|emb|CBK99864.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 244 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 6/231 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L+IED+ + I+ +L++ + V G+ + Y D +ILDLGL D G Sbjct: 6 FKVLIIEDEANICSFIQTLLETNGYQALVAQTCVMGMTMFISYNPDLVILDLGLPDRDGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +R++R K TP+ +LS ++ +DK+ L GA+DYI+KPF EL+AR+RA +R +R Sbjct: 66 DAIRSIR-QKYLTPIIVLSARTTEQDKIESLDLGANDYITKPFGTGELLARVRAALRVNR 124 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 SL L++N + + V V G + LT EY ++ LS +T + Sbjct: 125 YGGGSLPGGVFSAQGLTINYERRKVFVDGQEVRLTQTEYNIVAFLSEHAGRVMTYAAIVR 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAK 226 ++ D K + V + +RKKL + G YI G GY ++ E+AK Sbjct: 185 AIWGDTDASSTKKLQVNMANIRKKLGSRPGSNTYILNELGVGYRMIEEDAK 235 >gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] Length = 230 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 133/235 (56%), Gaps = 14/235 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57 M+IL+++DD+A+ ++ +S FN Y +L EDG E L K + D ILD+ + + Sbjct: 1 MKILVVDDDQAVREALR---RSLTFNGYTVELAEDGAEALEKIAKDRPDLAILDVMMPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +V R LR PV +L+ S+ ++V GL +GADDY+ KPF EEL+AR+R+++R Sbjct: 58 DGLDVCRRLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLR 117 Query: 118 RSRGHAQSLIVTGDLS---VNLDAKTVEV-QG-HRIHLTGKEYQMIELLSLRKNTTLTKE 172 RS ++ L ++LD +T EV +G RI LT E+ ++ELL L++ Sbjct: 118 RSALEVPAMEDAATLQFEDLSLDPETREVFRGERRISLTRTEFALLELLMSNPRRVLSRT 177 Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V+I LR+K + A G I TV G GYV+RE A Sbjct: 178 AILEDVW-GYDFPTSGNALEVYIGYLRRK-TEAEGEPRLIHTVRGVGYVMRETAP 230 >gi|319935317|ref|ZP_08009755.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1] gi|319809725|gb|EFW06126.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1] Length = 228 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 127/220 (57%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD ALA S++ L+ +++ + V D I + + FD +++D+ L D G E Sbjct: 3 KVLIVEDDIALAKSLKAALEVKDYQIEVADCYNLAIRMFQHMTFDILVVDIQLPDGDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ L+ + E V+GL SG DDY++KPF +EL AR++A++RRS+ Sbjct: 63 LCEYIR-KQSQLPILFLTANDNEEMLVKGLNSGGDDYMTKPFRIKELYARLQALLRRSQS 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +IV G+L ++L + V ++ +HL+ ++ ++++L + KN LT+ L + Sbjct: 122 LQDKMIV-GNLQIDLQRREVFIEKQEVHLSTIDFDILKMLMIHKNQVLTRSQLLEAIDQE 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + V + +LR KL G +YIETV G GY L Sbjct: 181 NNFVEDNTLSVHVKRLRDKLG-IYHGHSYIETVRGIGYRL 219 >gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 251 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 121/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ + + + L+ + V G ++ ++ D I+LD+ L D+ GFE Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV L+G+ ++D+VRGL G DD+++KPF +E+ AR+RA++RRS G Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G + ++ DA V + LT E+ ++ L L++ Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ RDE ++D +I LR+KL G++ I TV G GY L Sbjct: 208 VWNHRDE-GSGVVDTYIYYLRRKLGEP--GQSLIRTVRGVGYQL 248 >gi|226305622|ref|YP_002765582.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|229489559|ref|ZP_04383422.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226184739|dbj|BAH32843.1| putative OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|229323656|gb|EEN89414.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 226 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL EDD+A+A + L E ++V V G ++ +FD +ILDLGL + G EV Sbjct: 4 VLLAEDDEAIAAPLSRALGREGYSVTVEPTGPAALQQALEGDFDLLILDLGLPGMDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + S V +L+ + D V GL +GADDY+SKPF EL+AR+RA++RR G Sbjct: 64 CRQIRAHRTSLAVLMLTARTDEVDFVVGLDAGADDYVSKPFRLAELMARVRALLRRHGGR 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 +++ G + + A+ V V G I L KEY+++ +L ++++ L ++ Sbjct: 124 EDTIVEVGGIRLEPAARRVLVNGSEIALANKEYELLRVLLEHAGEVVSRDTILREVWGDV 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGY 219 + K +D+ + LR+K+ + + I TV G G+ Sbjct: 184 ELRGSKTLDMHMSWLRRKIGDEGPAVERRIATVRGVGF 221 >gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13] Length = 228 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 128/222 (57%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L++ +NV V G+ E + + ++LD+ L I G E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV L+ GADDY+ KPF +EL+AR++A++RR G Sbjct: 67 VLKWIR-KDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V + +DA + +V G + KE++++ L+ KN T++ L ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 G D P + +DV I +LR+KL+ GG+++ +ETVWG GY Sbjct: 186 -GYDYPGYSRTVDVHIKRLREKLN---GGEDWQLETVWGVGY 223 >gi|15595953|ref|NP_249447.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107100216|ref|ZP_01364134.1| hypothetical protein PaerPA_01001239 [Pseudomonas aeruginosa PACS2] gi|116048671|ref|YP_792529.1| two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218893301|ref|YP_002442170.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254239118|ref|ZP_04932441.1| hypothetical protein PACG_05301 [Pseudomonas aeruginosa C3719] gi|254245010|ref|ZP_04938332.1| hypothetical protein PA2G_05892 [Pseudomonas aeruginosa 2192] gi|296390895|ref|ZP_06880370.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313105577|ref|ZP_07791843.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9946643|gb|AAG04145.1|AE004510_9 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115583892|gb|ABJ09907.1| probable two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126171049|gb|EAZ56560.1| hypothetical protein PACG_05301 [Pseudomonas aeruginosa C3719] gi|126198388|gb|EAZ62451.1| hypothetical protein PA2G_05892 [Pseudomonas aeruginosa 2192] gi|218773529|emb|CAW29341.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310878345|gb|EFQ36939.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 223 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRILL+ED LA S+ LK + V DL +DG+ E+ ILD+GL + Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTV---DLLQDGVAADLALASEEYALAILDVGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEVL LR + PV +L+ ++D+V GL GADDY++KPF EL AR++A++R Sbjct: 58 DGFEVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS + L G L +L + + + LT +E ++E + R ++KE Sbjct: 118 RSVLGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +E I++++ +LRKKL GG I T G GY+L Sbjct: 178 VFGLDEEASADAIEIYVHRLRKKLE---GGAVRIVTFRGLGYLL 218 >gi|262370701|ref|ZP_06064026.1| two-component system response regulator [Acinetobacter johnsonii SH046] gi|262314501|gb|EEY95543.1| two-component system response regulator [Acinetobacter johnsonii SH046] Length = 254 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 15/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 RIL+++DD L ++ L+ + F V D ++ + + F I+LD L Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGF---VVKTAHDATQMDRLLQRELFSLIVLDFMLPVED 78 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 79 GLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + ++ G S++L +T+ +G + LT E+ +++ L LT+ Sbjct: 139 QVREVPGAPSQQMEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTR 198 Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +N L GR+ + + IDV + +LR+ + YI+TVWG GYV Sbjct: 199 DKLMN-LARGREWGAMERSIDVQVSRLRRLVEENPARARYIQTVWGVGYVF 248 >gi|262375130|ref|ZP_06068364.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262310143|gb|EEY91272.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 254 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 15/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 RIL+++DD L ++ L+ + F V D ++ + + F I+LD L Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGF---VVKTAHDATQMDRLLQRELFSLIVLDFMLPVED 78 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 79 GLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + ++ G S++L +T+ +G + LT E+ +++ L LT+ Sbjct: 139 QVREVPGAPSQQMEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTR 198 Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +N L GR+ + + IDV + +LR+ + YI+TVWG GYV Sbjct: 199 DKLMN-LARGREWGAMERSIDVQVSRLRRLVEENPARARYIQTVWGVGYVF 248 >gi|73539891|ref|YP_294411.1| DNA-binding response regulator CreB [Ralstonia eutropha JMP134] gi|72117304|gb|AAZ59567.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 226 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 113/220 (51%), Gaps = 6/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ A+A +I+ L ++ V LG D +E + FD +ILD+GL D+ GFEV Sbjct: 6 ILVIEDESAIADTIDYALSTDGMAVERCALGGDALERLRTQAFDLVILDVGLPDLSGFEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 R LR PV L+ D+V GL+ GADDY+ KPF+ EL AR+R I+RR+ R Sbjct: 66 CRTLRTFT-DVPVIFLTARHDEIDRVVGLEIGADDYVVKPFSPRELAARVRVILRRTARQ 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +V+ D V GH + LT EY+M+ L+ ++ ++ ++ Sbjct: 125 PVAEPASQSVFTVDNDGARVAFHGHWLELTRYEYRMLALMLRHPGRIYSRAQLMDEVW-- 182 Query: 182 RDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D P+ + +D I +R KL + I T G GY Sbjct: 183 HDAPDTIDRTVDTHIKTVRAKLRALDAASDPIRTHRGMGY 222 >gi|320109408|ref|YP_004184998.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319927929|gb|ADV85004.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 234 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 126/231 (54%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + + L+S ++V + G +G E K + D I+ DL + ++ G E Sbjct: 4 RILVVDDERQITRMLRTSLQSSGYDVSIASDGLEGFERFKADQPDLIVTDLAMPEMNGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 + +A+R +TP+ +LS + K+ L GADDY++KPF+ EL+ARIR +RR + Sbjct: 64 LTQAVR-RMATTPIIVLSVRDTDTMKITALDEGADDYLTKPFSMPELLARIRVQLRRIEA 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I GD +++DA TV V G +HLT KE+ ++ L S LT ++ L ++ Sbjct: 123 AEPGEVHIEVGDFVIDVDAHTVVVAGESLHLTPKEFDLLLLFSRNPLRVLTHKVLLRGVW 182 Query: 180 D--GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 G D+PE + V I +LRKK+ + + W GY + + DE Sbjct: 183 GPAGEDQPEY--LRVLIAQLRKKIERTDAARYIVSEPWV-GYRFQPSGTDE 230 >gi|296102850|ref|YP_003612996.1| DNA-binding transcriptional regulator PhoP [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057309|gb|ADF62047.1| DNA-binding transcriptional regulator PhoP [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 223 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLQEMGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S PV +L+ +DKV L +GADDY++KPF+ EE+ AR++A++R Sbjct: 58 DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVISLPPFQVDLSRREFSINNEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 220 >gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 239 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++D+ + + L+ F V+ + G ++L + E D ++LD+ L D+ GF Sbjct: 7 RLVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLVRDTEPDLVVLDVMLPDMDGFT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R PV L+ +DK+ GL G DDY++KPF+ EE+VARIRA++RR+ Sbjct: 67 VTRRMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHP 126 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ DL ++ D+ V G + L+ E++++ L L L+K L+H++ Sbjct: 127 TPVDDAVLRFADLELDDDSHEVRRAGRVVDLSPTEFKLLRYLMLNPGRVLSKAQILDHVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-----AGGKNYIETVWGRGYVLRENAK 226 + I++ +I LR+K+ NA + + I T G GY+LR+ K Sbjct: 187 QYDWGGDANIVESYISYLRRKIDNAPLPDGSTPEPLIATKRGVGYLLRQPPK 238 >gi|171915578|ref|ZP_02931048.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 247 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 123/240 (51%), Gaps = 19/240 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++A +++ L+SE F V ++ G +E+ EF ++LD+GL D+ GFE Sbjct: 6 RILVVEDEPSIADTLQYSLESEGFAVQISGTGASALEILGQEEFALVVLDIGLPDMTGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R +K + PV L+ SS D+V GL+ G DDY+ KPF+ EL AR+RA++RR++ Sbjct: 66 VCRQVRTSK-NVPVIFLTARSSEVDRVVGLEIGGDDYLCKPFSPRELTARVRAVLRRTQP 124 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQ----------GHRIHLTGKEYQMIELLSL 163 A Q+ + + L A T V G + L+ EY++++ L+ Sbjct: 125 QAAPAATGPIQAQVTPQPQAGPLGATTPVVVDETRCQIRYFGEVLPLSRYEYRLLQTLAR 184 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + H D D + +D + LR K+ I T G GY L E Sbjct: 185 HPGRVFSRSQLMEHASDEPDAAMERTVDAHVKSLRAKMKLIREEVEAIVTHRGMGYSLTE 244 >gi|163759381|ref|ZP_02166467.1| osmolarity response regulator [Hoeflea phototrophica DFL-43] gi|162283785|gb|EDQ34070.1| osmolarity response regulator [Hoeflea phototrophica DFL-43] Length = 235 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 114/225 (50%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++DD L + L F D G DAI+LDL ++ G Sbjct: 7 RVIVVDDDPELRTLLRRFLSEHGFETRAVDGGTALDRELSRSPADAIVLDLMMSGEDGLA 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A TP+ +L+ D++ GL++GADDY++KPF ELVAR+ A++RR+RG Sbjct: 67 ICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLAKPFEPRELVARLSAVLRRTRG 126 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G L +N + V G + L+ +E+ ++ + + L++ + Sbjct: 127 MRDVPTDDTVTIGPLEINFSTRMVTRDGASLKLSSREFALLAAMVRSRGRPLSRAQLIER 186 Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 GRD E + +DV I +LR+ L + A I+TVWG GYVL Sbjct: 187 AL-GRDAEVTDRAVDVQIARLRRALGDRADDAGLIKTVWGVGYVL 230 >gi|148543356|ref|YP_001270726.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152766|ref|YP_001841107.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|194467516|ref|ZP_03073503.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227364430|ref|ZP_03848520.1| response regulator [Lactobacillus reuteri MM2-3] gi|325683629|ref|ZP_08163145.1| response regulator [Lactobacillus reuteri MM4-1A] gi|148530390|gb|ABQ82389.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224110|dbj|BAG24627.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|194454552|gb|EDX43449.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227070523|gb|EEI08856.1| response regulator [Lactobacillus reuteri MM2-3] gi|324977979|gb|EGC14930.1| response regulator [Lactobacillus reuteri MM4-1A] Length = 229 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 130/226 (57%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + + D E +L + IILDL + +I G Sbjct: 1 MKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEIDG 60 Query: 60 FEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 +V++ RV K S P+ +LS ++ DK++GL +GADDY++KPFN E++AR+++++RR Sbjct: 61 MDVIK--RVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 119 SRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S+G + ++ G L +N D+ V+ ++G I LT E+ ++ LL+ N + + Sbjct: 119 SQGEVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADD 178 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 179 IFERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224 >gi|91779387|ref|YP_554595.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|91692047|gb|ABE35245.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 226 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 8/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILL+ED+ + L YV D EDG+ + ++D +ILD+ L Sbjct: 1 MRILLVEDEPKTGAYLRKGLSEAG---YVVDWAEDGVTGQHQAETEDYDLLILDVMLPGQ 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ +L LR + STPV L+ + D+VRGL+ GADDY++KPF+ ELVAR+R+I+R Sbjct: 58 DGWTLLHNLRRTR-STPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + + DL ++L + QG I LT KE+ ++ LL ++ L + + Sbjct: 117 RGKPRETMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + ++D I +LR K+ +A K I TV G GYVL Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKVDDAYEPK-LIHTVRGMGYVL 219 >gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 241 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 126/228 (55%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED+ LA + L E + V D G +G++ FD IILD+ L + GFE Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYETTVIDHGAEGLQAALQRSFDLIILDIMLPGLNGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L LR I TP+ IL+ ++ E+ V+GL+ GADDYI+KPF EL+AR+ A++RR++ Sbjct: 64 ILTKLRQNGIRTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQL 123 Query: 121 --GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G A + +I G+LS+ + V + G + L KE++++ L R +T++ Sbjct: 124 DEGKATVESNEKVISAGELSIFPEKYEVILNGESVPLRPKEFEVLLYLVQRPGMVVTRDD 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +N ++ + +DV + LRKKL IE++ G GY L Sbjct: 184 LMNIVWGFDYIGGQRTVDVHVSSLRKKLELGQQSVQ-IESIRGVGYKL 230 >gi|293376811|ref|ZP_06623031.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292644563|gb|EFF62653.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 230 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ ++ L F V + GE+G++ ++D I+LD+ L GF Sbjct: 4 RILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKDGFA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR IST + +LS D+V GL GADDY++KPF+ E+V++I+AI+RR Sbjct: 64 VCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKEV 123 Query: 121 -GHAQSLIVTGDLSVNLDAKTVE--VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G S+ LD E V G I T KEY+++E L K +++++ L+ Sbjct: 124 LSSEKNKNYLGYRSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLDR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L+ + + +I+DV I K+R+KL + G K I+T+ G GY+L + D Sbjct: 184 LWGFEYDGDTRIVDVHIFKIREKLKD-YGIK--IKTIRGIGYMLEDEVHD 230 >gi|291037430|ref|ZP_06568394.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter xylinus NBRC 3288] gi|330990829|ref|ZP_08314784.1| Transcriptional activator protein CopR [Gluconacetobacter sp. SXCC-1] gi|329761975|gb|EGG78464.1| Transcriptional activator protein CopR [Gluconacetobacter sp. SXCC-1] Length = 228 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD A + L+ +V G DG + +D +ILD L + G Sbjct: 8 RLLLVEDDHATTDYVRQGLEESGIDVVCVANGTDGSQHALSQTWDIVILDRMLPGLDGLT 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L +R I TPV L+ M + +V GL+ GADDY+ KPF ELVAR++ ++RRS Sbjct: 68 ILMRMRSYAIMTPVLFLTTMDGVPSRVAGLRHGADDYMIKPFALRELVARVQVLLRRSSS 127 Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I+ D+ +NL V G ++ L +E +++E T L+++M L ++ Sbjct: 128 FQHTTIMNVADVELNLLTLAVTRNGEKVLLQPQELKLLEYFMRNAGTVLSRQMLLKDVWH 187 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 I++ IC+LR+KL G+ I TV G GYV+ Sbjct: 188 MDFPVRTNIVETHICRLREKLGQ--DGQPLIHTVRGSGYVM 226 >gi|229829576|ref|ZP_04455645.1| hypothetical protein GCWU000342_01673 [Shuttleworthia satelles DSM 14600] gi|229791565|gb|EEP27679.1| hypothetical protein GCWU000342_01673 [Shuttleworthia satelles DSM 14600] Length = 235 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 115/205 (56%), Gaps = 1/205 (0%) Query: 19 MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 +LK+ ++ V G D ++ + +D ILD+ + + GF VLR +R A+ PV +L Sbjct: 30 ILKANHYEVDAVYDGRDALDYLETGVYDGAILDVMMPKMDGFTVLRKIRSAQNDIPVLML 89 Query: 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDA 138 + S I+D+V+GL SGADDY++KPF+ EL+AR+R+I RR + + G L+++ Sbjct: 90 TARSEIDDRVQGLDSGADDYLTKPFSTRELIARVRSITRRRTVATDASMHLGRLTLDQLT 149 Query: 139 KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLR 198 T G +HL KEYQ++E+L ++ + F+ ++ + E ++ V I LR Sbjct: 150 CTANAPGGSLHLANKEYQILEMLLANPGQIISPDQFMEKIWGFESDVEQNVVWVNISNLR 209 Query: 199 KKLSNAAGGKNYIETVWGRGYVLRE 223 +KL + G I+ G GY ++E Sbjct: 210 RKLKSIDAGI-VIKASRGLGYFVQE 233 >gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM 12442] gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM 12442] Length = 237 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ L+ E + V + GE+ + L +++ IILDL + + G Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VARI+A++RR Sbjct: 64 EVCRRLR-NKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122 Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S Q +L+ L+++++ V V G I LTGKE ++++ + TK Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ I+TVWG GY Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEVDPSNPKLIQTVWGIGY 228 >gi|188534102|ref|YP_001907899.1| DNA-binding transcriptional regulator PhoP [Erwinia tasmaniensis Et1/99] gi|188029144|emb|CAO97016.1| Two-component response regulator of virulence determinants [Erwinia tasmaniensis Et1/99] Length = 222 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + L+ V D ED E F + D ++DLGL D Sbjct: 1 MRVLVVEDNPLLRHHLAVQLREMGHQV---DAAEDAKEADYFLNEHTPDITLVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R ++ P+ +L+ + KV L++GADDY++KPF+ EE+VAR++A++R Sbjct: 58 DGMTLIRRWRTQEVRQPILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + V + + LT EY ++E L ++K+ + Sbjct: 118 RNCGLASQIITLQPFQIDLSRREVTIHERLLKLTAFEYTILETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A + I TV G GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAEYAQEVITTVRGLGY 218 >gi|238921655|ref|YP_002935170.1| DNA-binding transcriptional regulator CpxR [Edwardsiella ictaluri 93-146] gi|238871224|gb|ACR70935.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Edwardsiella ictaluri 93-146] Length = 232 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L E F V V GE + + D ++LD+ + G + Sbjct: 3 KILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAILD-ASIDLLLLDVMMPKKNGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q ++ L +N + G + LTG E+ ++ LL+ +++E Sbjct: 121 NEQQQNSDSGAPILQVDRLQLNPGRQEASFDGQPLELTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G+ + +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGQPWFKTLRGRGYLM 228 >gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 238 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE ++L + +ILDL + + G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR K + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 64 EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFF 122 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ + L++NL+ TV I LTGKE ++++ TK Sbjct: 123 VLGSNISVQEQTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFISNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGY 228 >gi|241206329|ref|YP_002977425.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860219|gb|ACS57886.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 225 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ ALA + +L+ V V G + FD +ILDL L ++ G Sbjct: 1 MRILLTEDNIALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVILDLNLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R + V IL+ + E++V+GL GADDY+ KPF+ E AR+R ++RR Sbjct: 61 DVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G +S +L+++T + + +E ++E+L +R + KE + L Sbjct: 121 GLRSATVSFGGISFDLNSRTFSAGATPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ I+ ++ +LRK+LS ++T G GY L Sbjct: 181 FDDDISANAIEQYVSRLRKRLSPHG---LTVKTARGIGYYL 218 >gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum JL354] Length = 229 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +++L+EDD ALA +E +E + V VT G++ + + D IILD + G E Sbjct: 5 KLILVEDDPALAELLEFRFANEGYQVRVTADGDEALLMASEDVPDLIILDWMIEGTSGIE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR K + P+ +L+ + +D+VRGL++GADDY++KPF+ EL+AR+ A++RR Sbjct: 65 VCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRRI 124 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A I GD+ ++ A VE +G + L EY++++ ++ L+ + Sbjct: 125 RPALAGETIEVGDIRLDPVAHKVERRGRNLQLGPTEYRLLKFFMESPGRVFSRGQLLDGV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E++ +DV I +LRK L G + I TV GY L Sbjct: 185 WGTGSDIELRTVDVHIRRLRKAL-ELEGASDPIRTVRSAGYAL 226 >gi|294638284|ref|ZP_06716537.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC 23685] gi|291088537|gb|EFE21098.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC 23685] Length = 232 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L E F V V GE + + D ++LD+ + G + Sbjct: 3 KILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLD-ASIDLLLLDVMMPKKNGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSSW 120 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q ++ L +N + G + LTG E+ ++ LL+ +++E Sbjct: 121 NEQQQNGDNGAPILQVDRLQLNPGRQEASFDGQPLELTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G+ + +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGQPWFKTLRGRGYLM 228 >gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 235 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 130/227 (57%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ I+ L+ E + V GE+G+E + + D IILDL L I G E Sbjct: 4 KVLVVDDEKPISDIIKFNLEKEGYEVVTAFDGEEGLEKVESDQPDLIILDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R AK +TP+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAKRVR-AKHNTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDA 122 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I G L+++ DA TV +G I+LT +E++++ L+ + +E Sbjct: 123 ANTPNAETENNDIKIGALTIHPDAYTVTKRGDNINLTHREFELLHYLAQHIGQVIKREQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +V+ +DV + +LR+K+ + ++ T G GY L Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLVTRRGVGYYL 229 >gi|123441540|ref|YP_001005526.1| putative two-component system response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088501|emb|CAL11294.1| putative two-component system response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 227 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + L E F + G++GI+ + A+ILD+ L D+ G Sbjct: 1 MKILLVDDDVELGSMLREYLSGEGFTAELVLTGKEGIDGALSGNYTALILDIMLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R K P+ +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 61 DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119 Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H +I GDL++N ++ E QG LT E+ ++ELL + +TK+ Sbjct: 120 EHPDVPSGDDGVITHGDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPDRVVTKDEL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + +DV I +R+KL+ G IETV GY +R Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGSTLNIETVRSIGYRIR 227 >gi|158320425|ref|YP_001512932.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140624|gb|ABW18936.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 237 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 135/230 (58%), Gaps = 11/230 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + I L+ E ++V + + G++ I + + + D ++LDL L + G ++ Sbjct: 9 ILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKVDLVVLDLMLPGMDGIQI 68 Query: 63 LRAL-RVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L R+ + P+ +L+ S D+V GL+ GADDYI+KPF+ EL+ARIRA++RRS Sbjct: 69 CKKLNRMDEYENLPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLRRSE 128 Query: 121 GHAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S IV DL ++++ TV + G + LT KE++++++LS + L++ Sbjct: 129 SKQDSSRYENKEKSIVVKDLIIDVEEHTVSIDGVYVELTLKEFELLKMLSENRGKVLSRN 188 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L+ ++ E + +DV I LR+K+ + + YIET+ G GY ++ Sbjct: 189 LLLDEIWGYEYFGETRTVDVHIRHLRRKIGDDKSNE-YIETIRGIGYKMK 237 >gi|294636784|ref|ZP_06715122.1| DNA-binding response regulator PhoP [Edwardsiella tarda ATCC 23685] gi|291089999|gb|EFE22560.1| DNA-binding response regulator PhoP [Edwardsiella tarda ATCC 23685] Length = 224 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 120/219 (54%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L H + + ++ V + ++ + D I+DLGL G Sbjct: 1 MRILVVEDNNLLRHHLAVQMRELGHQVDAAENAKEADFFVREQTPDIAIVDLGLPGEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R R +++ P+ +L+ S ++KV L++GADDY++KPF+ EE++AR++A++RR+ Sbjct: 61 SLIRRWRSEQVTLPILVLTARESWQEKVTVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I V+L + + V I LT EY ++E L ++K+ + LY Sbjct: 121 GLASQIISLPPFQVDLSRRELRVDDTLIKLTAFEYTIMETLIRNNGKVVSKDALMLQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E IDV + +LRKKL A + I TV G+GY Sbjct: 181 DAELRESHTIDVLMGRLRKKLQQAFPAE-VITTVRGQGY 218 >gi|254386084|ref|ZP_05001398.1| two-component system regulator [Streptomyces sp. Mg1] gi|194344943|gb|EDX25909.1| two-component system regulator [Streptomyces sp. Mg1] Length = 240 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 121/239 (50%), Gaps = 23/239 (9%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MR+LL+EDD +A ++ +L F V GE+ ++ F ++LDLGL D Sbjct: 1 MRLLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPADAPPFGVVLLDLGLPDQ 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV +R + STPV +++ + + ++ GL GADDY+ KP++ EL+ARI A+ R Sbjct: 61 DGYEVCGKIR-KRTSTPVIMVTARADVRSRIHGLNMGADDYVVKPYDTGELLARIHAVAR 119 Query: 118 RSRGHAQSLIVT---------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162 R+ G + T G +S+ L + V V G + LT KE+ ++ LL+ Sbjct: 120 RTGGSENTATATPGPAGTGGEPGVVRLGPVSIELPTRRVSVDGADVPLTRKEFDLLALLA 179 Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R +E ++ ++ E + ++V + LR KL A IETV G GY L Sbjct: 180 QRPGVVFRREQIISEVWRTSWEGTGRTLEVHVASLRSKLRMPA----LIETVRGVGYRL 234 >gi|169335013|ref|ZP_02862206.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM 17244] gi|169257751|gb|EDS71717.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM 17244] Length = 233 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + +I + L +E +N++ G + + + + E I+LD+ + + G Sbjct: 6 ILVVDDDKEIVKAINIYLSNEGYNIFEAYDGYEALSVLEKEEIHLIVLDIMMPKLDGIAT 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R K + PV LS S DK+ GL GADDY++KPFN EL+AR+++++RR Sbjct: 66 ITKVR-EKQNVPVIFLSAKSEDTDKIIGLNIGADDYVTKPFNPLELIARVKSLIRRYTIL 124 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S A +++ TG LS+N D V V G + LT E+++++LL R N + E Sbjct: 125 GNMSEKEADNILTTGGLSLNEDTTEVTVDGEEVKLTSTEFKILKLLMSRPNKVFSMEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V + +R+K+ Y++ VWG GY Sbjct: 185 EKVWGELSYMTDNTVAVHVRHIREKIEIDPKNPKYLKVVWGIGY 228 >gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 238 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 128/229 (55%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ E + + + GE + + ++D I+LD+ L I G E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMAAGKDYDLIMLDVMLPGIDGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR K +TPV +L+ ++V+G ++GADDY+ KPF+ E++ R++AI+RRS Sbjct: 67 VCSRLRQVK-ATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRRSSA 125 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + IV L + DA V G + LT KEY+++ L++ + ++E Sbjct: 126 TAFLTKEANSSNNIVLPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221 L +++ +++ +D + +LR+KL+ + + I TVWG GY L Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAASMITTVWGVGYKL 234 >gi|302530063|ref|ZP_07282405.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302438958|gb|EFL10774.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 235 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 129/229 (56%), Gaps = 2/229 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + +++ L++E+ +V G G++L + FD ++LD+ L + G+ Sbjct: 7 RVLVVDDEPGVRKALQRGLRAEDMDVVTAADGPTGLQLARTGSFDVVLLDIMLPGLSGYR 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR ++TPV ++S D+ GL GAD Y+ KPF+ LVA++RA++RR+ Sbjct: 67 VLERLRAENVTTPVLLVSAKDGEIDQADGLDLGADGYLVKPFSFVVLVAQVRAVLRRAGP 126 Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + + G L V+ + V G + L+ +E+ ++E+L R T +TK+ L ++ Sbjct: 127 DASRGALKLGALEVDRALRQVRWDGQEVPLSPREFGLLEVLVGRAGTVVTKDELLRAVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +++V++ +R+KL +A G + + TV G GY+ ++ DE Sbjct: 187 EEQAVTRNLVEVYVGYVRRKL-DAVGAGSILRTVRGHGYLASDDQLDEV 234 >gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430] gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis F0399] gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430] gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis F0399] Length = 228 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ +A +++ L+ E F G E +FD ++LD+ L + G E Sbjct: 6 RVLIVEDEARIARFLQMELEHEGFEAETESNGTRAYERIIQEKFDIVLLDVMLPGMDGIE 65 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 + R RV +IS P+ +L+ ++ED+V GL GADDY++KPF EL+AR+ +RR Sbjct: 66 ICR--RVREISNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALRRRD 123 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G + +L + L V+V G + LT +EY ++E L K T LT++ L Sbjct: 124 LAEGDPSDRLTVKNLVMFLSRYEVQVDGEIVALTKREYDLLEYLLRNKRTVLTRDQILQE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E ++DV+I LR KL + K YI TV G GYV+R+ Sbjct: 184 VWGFDYTGETNVVDVYIRYLRAKLDDRFHQK-YIYTVRGVGYVVRD 228 >gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 228 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 122/218 (55%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ A+A + L+ E + V GE+ + + E ++LD+ L + G EV Sbjct: 5 ILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLEHLEPALLVLDVRLPGMDGVEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 R +R PV +L+ + +E++VRGL++GADDY+ KPF EEL+ARI A++RRS R Sbjct: 65 CRQVRQRWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLRRSKRQ 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L+ G L+++L+A+T + LT +E+ ++ L +++ ++ Sbjct: 125 PTRHLLRNGPLTLDLNARTATCGERTLSLTPREFDLLAYLMQHPRRAISRLQIYREVWGH 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++V+I LR+KL AG YI TV G GY Sbjct: 185 DFDHGTSLLEVYISYLRRKLQE-AGCPGYIATVRGVGY 221 >gi|332162529|ref|YP_004299106.1| putative two-component system response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666759|gb|ADZ43403.1| putative two-component system response regulator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860750|emb|CBX71041.1| transcriptional regulatory protein cpxR [Yersinia enterocolitica W22703] Length = 227 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + L E F + G++GI+ + A+ILD+ L D+ G Sbjct: 1 MKILLVDDDVELGSMLREYLSGEGFTAELVLTGKEGIDGALSGNYTALILDIMLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R K P+ +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 61 DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119 Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H +I GDL++N ++ E QG LT E+ ++ELL + +TK+ Sbjct: 120 EHPDVSSGDDGVITHGDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPDRVVTKDEL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + +DV I +R+KL+ G IETV GY +R Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGSTLNIETVRSIGYRIR 227 >gi|320094294|ref|ZP_08026085.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978760|gb|EFW10312.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 226 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD A++ + L E + V + G + L D ++LDLGL D+ G + Sbjct: 3 RVLLVEDDPAISEPLARALGREGYEVLASSTGREA--LTNVEGADLVVLDLGLPDMDGLD 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 61 VAREIRADGGRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRHTA 120 Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+S + D+ V++ A + LT KE+ ++ +L + + ++ + ++ Sbjct: 121 EPAESELRAQDIRVDVAAHRAFSGSTELQLTAKEFDLLRVLLREAGSVVERDELMREVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ + LR+KL + A +YI TV G G+ Sbjct: 181 SDPTGSTKTLDMHVSWLRRKLGDEASDPHYITTVRGMGF 219 >gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 244 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ +A I+ L+ ++F+V + G +E+ K ++ DA ILD+ + + GF Sbjct: 19 RVLVVDDEANIADLIKARLEFQDFDVRTANDGASALEIAKDFQPDAYILDVMMPGMDGFT 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR A PV L+ +++D++ GL GADDY++KPF EE++ R+R I+RR + Sbjct: 79 VLNKLREAGDEAPVLFLTAKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRRVQP 138 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +SLI DL+++ D V G + L+ E++++ L + ++K L+ + Sbjct: 139 EEKEDESLITYADLTLSDDMHEVTKGGQVVDLSPTEFKLLRYLLINAEVVVSKAKILDAV 198 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++ ++ LR+K+ + I TV G GYVLR Sbjct: 199 WEYDFGGDGNVVESYVSYLRRKIDTQE--PHLIHTVRGVGYVLR 240 >gi|304406061|ref|ZP_07387719.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304345304|gb|EFM11140.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 225 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA ++ +LK +N++V G+ G++ +D I+LD+ L ++ G Sbjct: 1 MRLLIVEDEIHLAEALTQILKKQNYSVDAVHDGQAGLDNALSGIYDLILLDIMLPEMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R I+TPV +L+ I DK+ GL GADDY++KPF+ EEL+ARIRA +RR + Sbjct: 61 TVLKTMRSKGIATPVILLTAKGEISDKISGLDYGADDYVAKPFSTEELLARIRAALRR-K 119 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + + GD+ +N + G + L KE +++ELL RKN +KE + L Sbjct: 120 GEVVPEDALKFGDIELNAANLKLTCGGKELKLILKESELLELLMSRKNAVTSKEQIIEKL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVL 221 + E E ++V+I LRKKL NAA I T+ G GYVL Sbjct: 180 WGFDSEVEHNNVEVYISFLRKKLVFLNAA---VRINTIRGVGYVL 221 >gi|221068464|ref|ZP_03544569.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220713487|gb|EED68855.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 233 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD A+ +++ L NV V G + + E DA++LDL L + G Sbjct: 5 MQLLLVEDDSAMRTTLQRTLMRRGLNVDVAADGPSALAHWQTREPDAVVLDLSLPGLDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R + TPV IL+ ++ D+V GL +GADDY++KPF+ +EL AR+RA++RRS+ Sbjct: 65 QVLERARALGLRTPVLILTARGTVGDRVMGLNAGADDYLAKPFDLDELEARLRALLRRSQ 124 Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 I G L ++ + + + LT +E M+ L R +TKE Sbjct: 125 DSFTPRSGSEAIALGALRYEKESGAIYLDDKVLELTPRELSMMHALLARPGHAVTKERLF 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ G + + + ++V +LRKKL G + T+ G GY+++ A Sbjct: 185 SLVFPGEVDVQYEAVEVVAYRLRKKL---GGTGVQLVTLRGLGYLVKAEA 231 >gi|34557057|ref|NP_906872.1| transcriptional activator protein COPR [Wolinella succinogenes DSM 1740] gi|34482772|emb|CAE09772.1| TRANSCRIPTIONAL ACTIVATOR PROTEIN COPR [Wolinella succinogenes] Length = 224 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD L+ ++ L+ E + + + D L + +D I+LDL L D G Sbjct: 1 MKILLVEDDLDLSLVLKKALQKELYTIDIAPCLADASHLLTHFRYDLILLDLMLPDGNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR P+ IL+ +I D+V GL SGADDY++KPF+ EL+ARIRA +R Sbjct: 61 TFCQKLRARGEGIPLIILTAKDTIMDRVFGLDSGADDYLAKPFSLAELMARIRARLRNPI 120 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L + DL ++ K V G I LT KEY+++E L+L ++ TL++E+ L Sbjct: 121 TPENPLALKIADLEIDQRTKKVTRGGKLILLTPKEYRLLEFLALNQDATLSEEIIKEALL 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D ++ +I V+I +LR K+ K I T+ G GY Sbjct: 181 DFEEQTLSNVISVYIYRLRNKIDKDHSVK-LIHTLRGIGY 219 >gi|94311320|ref|YP_584530.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|254241470|ref|ZP_04934792.1| hypothetical protein PA2G_02165 [Pseudomonas aeruginosa 2192] gi|24461541|gb|AAN62112.1|AF440523_19 putative response-regulator ArmR [Pseudomonas aeruginosa] gi|93355172|gb|ABF09261.1| ArmR, DNA-binding response regulator (QseB) [Cupriavidus metallidurans CH34] gi|126194848|gb|EAZ58911.1| hypothetical protein PA2G_02165 [Pseudomonas aeruginosa 2192] Length = 222 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDDK + I L V+ E+ F A++LDLGL D G Sbjct: 1 MRILLVEDDKLIGRGIVAGLHKHGIAVHHVGTAEEAEATHAEDTFHALVLDLGLPDRDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L ++R + PV IL+ +IE +++GL GADDY+ KPF+ EL AR+ A+VRR++ Sbjct: 61 ELLASMRAVEPQLPVLILTARDAIEHRLKGLHEGADDYMIKPFDLRELAARLHALVRRTQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G L + ++ QG + L+ +E ++ L+ + +M LY Sbjct: 121 GRAAQVISAGPLRLEPESGLAWFQGEPVSLSRREVDLLAHLANADGRWVPPDMLNERLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V I +R+KL G IETV G GY L Sbjct: 181 LGEEIGSNALNVHIHNIRRKL-----GAEAIETVRGLGYRL 216 >gi|295094108|emb|CBK83199.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 233 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+ + + I LK+ ++ + G I + D ++LDLGL DI G +V Sbjct: 6 VLVVEDDRPVRNLIVTTLKAHDYRYLTAENGHSAIIEATSHNPDIVLLDLGLPDIDGTQV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + ++R + + P+ ++S S +DK+ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IESIR-SWSNMPIIVISARSEDKDKITALDAGADDYLTKPFSIEELLARLRVTQRRLLLL 124 Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G A S + G L ++ A + G +HLT EY+++ LLS LT Sbjct: 125 QASGDADSPVFQNGKLKIDYAAGCAYLNGEELHLTPIEYKLLCLLSHNVGKVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E ++ + VF+ LRKKL + YI+T G GY Sbjct: 185 QIWGSSWEKDIASLRVFMATLRKKLESQKDSPQYIQTHIGVGY 227 >gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 249 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 RIL+ +DD+ + ++ L+ E F G+ +E L D ILD+ + ++ G Sbjct: 26 RILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKPIDLFILDIMMPEMDGL 85 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E LR +R + PV ILS DKV GL+ GADDY+SKPF+ +EL+AR+ A +RR Sbjct: 86 ETLRHIR-ERTDAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAHLRREN 144 Query: 121 GHAQSLIVTGDLSVNLDAK--TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H QS VTG ++ LD TVEV G + L+GKE+Q++ L + T+++E + Sbjct: 145 KHRQSAPVTGIGALKLDPSSWTVEVDGKPVELSGKEFQILSYLLINAGQTVSREQIYAAV 204 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++ + V I LR KL A G+ I TVWG GY L + Sbjct: 205 WKDAFGGDLSTVTVHIKNLRDKL--GAEGRR-IRTVWGIGYRLERD 247 >gi|264677348|ref|YP_003277254.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299533046|ref|ZP_07046432.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|262207860|gb|ACY31958.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298718931|gb|EFI59902.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 233 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD A+ +++ L +V V G + + E DA++LDL L + G Sbjct: 5 MQLLLVEDDSAMRTTLQRTLMRRGLHVDVAADGPSALAHWQTREPDAVVLDLSLPGLDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R + TPV IL+ ++ D+V GL +GADDY++KPF+ +EL AR+RA++RRS+ Sbjct: 65 QVLERARALGLRTPVLILTARGTVGDRVMGLNAGADDYLAKPFDLDELEARLRALLRRSQ 124 Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A +I G L ++ + + + LT +E M+ L R +TKE Sbjct: 125 DSFTPRSASEVITLGALRYEKESGAIYLDDKVLELTPRELSMMHALLARPGHAVTKERLF 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++ G + + + ++V +LRKKL G + T+ G GY+++ A Sbjct: 185 SLVFPGEVDVQYEAVEVVAYRLRKKL---GGTGVQLVTLRGLGYLVKAEA 231 >gi|253690600|ref|YP_003019790.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757178|gb|ACT15254.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 220 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + ++ L FN+ G+ G K +DA++LDL L + G Sbjct: 1 MRILLIEDDRLIGDGLKAGLNKLGFNIDWFTEGKAGAAALKAAPYDAVVLDLSLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R A PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G +S+ +++V + + L +E ++EL L N LT+ LY Sbjct: 121 GQLQPALTHGAVSLEPGSRSVTLNNEPLILKSRELALLELFLLNPNRVLTRAQLEEKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LRKKL G +I TV G GY+L Sbjct: 181 WDDDVSSNAVEVHIHHLRKKL-----GSGFIRTVHGVGYIL 216 >gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM 12042] gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM 12042] Length = 230 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 129/219 (58%), Gaps = 4/219 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++++ + + K + + + G++G+ Y+ D I+LD+ L DI GFEV Sbjct: 4 ILIVDDNESICNILYHYGKEAGYTMVIAHTGQEGLTYFTNYKPDVILLDVMLPDIDGFEV 63 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K+S P+ +++ ++ +D+V GL GADDYI KPF+ +E++ARIRA++RR+ Sbjct: 64 CQCIR--KVSRVPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVLRRTED 121 Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + Q+ V G+L + V + G+ I+LT KE +++ LL+ ++E+ L+ ++ Sbjct: 122 NPEQADFVYGNLMIQESRNLVSLDGNPINLTKKEMELLVLLASHPGRVYSREILLDLVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + +D + +LR KL I+T+WG GY Sbjct: 182 YSGESYDRAVDSCVKRLRAKLDEYPHPCFSIKTIWGVGY 220 >gi|49484305|ref|YP_041529.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|82751682|ref|YP_417423.1| two component sensor protein [Staphylococcus aureus RF122] gi|257426219|ref|ZP_05602634.1| two component sensor protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428877|ref|ZP_05605271.1| two component sensor protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431486|ref|ZP_05607859.1| two component sensor protein [Staphylococcus aureus subsp. aureus 68-397] gi|257434196|ref|ZP_05610546.1| two component sensor protein [Staphylococcus aureus subsp. aureus E1410] gi|257437109|ref|ZP_05613149.1| two component sensor protein [Staphylococcus aureus subsp. aureus M876] gi|258422919|ref|ZP_05685819.1| two component sensor protein [Staphylococcus aureus A9635] gi|282904747|ref|ZP_06312621.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus C160] gi|282906425|ref|ZP_06314276.1| two-component system OmpR family KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus Btn1260] gi|282909393|ref|ZP_06317208.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911646|ref|ZP_06319445.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914926|ref|ZP_06322706.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus M899] gi|282917429|ref|ZP_06325182.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus D139] gi|282920257|ref|ZP_06327981.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus C427] gi|282925468|ref|ZP_06333122.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus C101] gi|283958859|ref|ZP_06376304.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus A017934/97] gi|293508998|ref|ZP_06667785.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus 58-424] gi|293510910|ref|ZP_06669609.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus M809] gi|293547512|ref|ZP_06672187.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus M1015] gi|295428667|ref|ZP_06821293.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589856|ref|ZP_06948496.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus MN8] gi|49242434|emb|CAG41148.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|82657213|emb|CAI81653.1| two component sensor protein [Staphylococcus aureus RF122] gi|257270924|gb|EEV03097.1| two component sensor protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274219|gb|EEV05736.1| two component sensor protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257277727|gb|EEV08397.1| two component sensor protein [Staphylococcus aureus subsp. aureus 68-397] gi|257280835|gb|EEV10980.1| two component sensor protein [Staphylococcus aureus subsp. aureus E1410] gi|257283502|gb|EEV13629.1| two component sensor protein [Staphylococcus aureus subsp. aureus M876] gi|257846943|gb|EEV70957.1| two component sensor protein [Staphylococcus aureus A9635] gi|282312869|gb|EFB43270.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus C101] gi|282316117|gb|EFB46498.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus C427] gi|282318631|gb|EFB48988.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus D139] gi|282321129|gb|EFB51460.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus M899] gi|282324411|gb|EFB54724.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282326663|gb|EFB56961.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330375|gb|EFB59893.1| two-component system OmpR family KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus Btn1260] gi|282594780|gb|EFB99757.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus C160] gi|283789577|gb|EFC28400.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus A017934/97] gi|290919632|gb|EFD96705.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus M1015] gi|291094702|gb|EFE24974.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus 58-424] gi|291466195|gb|EFF08722.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus M809] gi|295127337|gb|EFG56977.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576984|gb|EFH95698.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus MN8] gi|302333726|gb|ADL23919.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] gi|312437506|gb|ADQ76577.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus TCH60] gi|315193239|gb|EFU23637.1| two component sensor protein [Staphylococcus aureus subsp. aureus CGS00] Length = 231 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD A+ H +++ L + +NV + + + D I+LDLGL D G Sbjct: 4 KILIIEDDHAITHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLC 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R P+ ++S + ++ L +GA+DY++KPFN +EL ARIR I R ++ Sbjct: 64 LISEIR-QHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H ++ IV G LS++ +K+V + +HLT E+ ++ELLS K LT EM L +Y Sbjct: 123 HQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIY 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219 ++ E+ + V + LR+KLS K+ I+T GY Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGY 223 >gi|307704977|ref|ZP_07641865.1| response regulator, transcriptional regulatory protein [Streptococcus mitis SK597] gi|307621487|gb|EFO00536.1| response regulator, transcriptional regulatory protein [Streptococcus mitis SK597] Length = 178 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 107/176 (60%), Gaps = 1/176 (0%) Query: 48 IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107 I+LDL L + GF+VL+ LR I+TPV I++ S++DK G + GADDY++KPF EE Sbjct: 2 ILLDLMLPEKNGFQVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEE 61 Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 L RI+A+++RS ++ + GD+ +NL TV+V+ + L GKE+ ++ +N Sbjct: 62 LKMRIQALLKRSGKFNENTLSYGDILINLSTNTVKVEDTTVELLGKEFDLLVYFLQNQNV 121 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L K + L+ + + +++V++ K+RKKL +N ++T+ GY+L++ Sbjct: 122 ILPKTQIFDRLWGFDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYILKD 176 >gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20] gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20] Length = 229 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ A++ ++ L+ ++V V G+ +L K FDAI+LDL L I G Sbjct: 3 KILVVDDEIAISTLLKYNLEENGYDVTVASDGQTAYDLAKQESFDAILLDLMLPVIDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR K+STPV +++ D+V GL+ GADDYI+KPF+ E+VAR++A++RRS+ Sbjct: 63 LLKNLRQDKVSTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVVARVKAVLRRSQV 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q +I ++ ++ + K V + LT +EY+++ + R + +E L Sbjct: 123 DHQVVAESDVIKVQNVVIDDNKKVVTRDNQILTLTPREYELLLYFAHRIGRVIDRETILT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E +++D+ I LR+K+ ++TV G GY L Sbjct: 183 AVWGYEFTGESRMVDMHISNLREKIETNPKSPQLLKTVRGFGYTL 227 >gi|251795715|ref|YP_003010446.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543341|gb|ACT00360.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 229 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD +A L+ F V V GE G+ + +D +ILDL + + GFEV Sbjct: 5 VLLIEDDTTIAELQRDYLEINGFEVQVAADGEAGLAMSLSGHYDLVILDLMIPKMNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R K P+ I++ + D +RGL GADDYI+KPF ELVAR++A + R Sbjct: 65 CKKIR-EKQDIPILIVTSLHDDIDVIRGLGLGADDYITKPFKPAELVARVKAHLARYERL 123 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++++ DL ++ D + V V LT KE+ ++ L+ N +KE Sbjct: 124 VGKKDVKNIVQIRDLYIDPDTRKVYVNDEEAVLTTKEFDLLYFLASHPNKVFSKEHLFER 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ + V I K+R+K+ + YIETVWG GY R Sbjct: 184 IWGVDALGDMQTVTVHIRKIREKIEKDSANPVYIETVWGAGYRCR 228 >gi|121596367|ref|YP_988263.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120608447|gb|ABM44187.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 223 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L + + + V G L + +FDA++LDLGL + G Sbjct: 1 MRILVVEDEPTLRDQLVQAIAAAGHTVEAASDGAQAHYLGEVEDFDAVVLDLGLPVLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A + PV IL+ ++ +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 SVLRRWRAAGRNMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G + ++ V V G + LT E++++ LL RK L++ H+Y Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGQPLTLTSHEFKLLSLLMQRKGQVLSRTELSEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + I+VF+ +LRKKL + IETV G GY L E Sbjct: 181 HDSDRDSNTIEVFVGRLRKKLPPGS-----IETVRGLGYRLAE 218 >gi|239982704|ref|ZP_04705228.1| two-component system regulator [Streptomyces albus J1074] gi|291454552|ref|ZP_06593942.1| two-component system response regulator [Streptomyces albus J1074] gi|291357501|gb|EFE84403.1| two-component system response regulator [Streptomyces albus J1074] Length = 232 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 16/232 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MR+LL+EDD +A ++ +L F V GE+ ++ F ++LDLGL D Sbjct: 1 MRLLLVEDDNHVAGALSAILSRHGFQVTHARSGEEALKALLPAGGPPFGVVLLDLGLPDQ 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV +R A+ S PV +++ + + ++ GL GADDY+ KP++ EL+ARI A+ R Sbjct: 61 DGYEVCGKIR-ARTSVPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVAR 119 Query: 118 RSRG--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 R++ A +V G + V L + V V G + LT KE+ ++ LL R Sbjct: 120 RNQPGDAEGAATPAPGALVIGAVQVELPTRRVSVDGEVVALTRKEFDLLALLVQRPGVVF 179 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++ ++ E + ++V + LR KL A IETV G GY L Sbjct: 180 RREQIISEVWRTSWEGTGRTLEVHVASLRSKLRRPA----LIETVRGVGYRL 227 >gi|227112103|ref|ZP_03825759.1| DNA-binding transcriptional regulator BasR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 222 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDDK L + L L E + ++ L + +ILDLGL D G Sbjct: 1 MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALISSAHYSLVILDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R PV IL+ + D+V GL GADDY++KPF EL AR+RA++RR + Sbjct: 61 TLLSRWRKNHYQHPVLILTARDKVNDRVSGLDVGADDYLAKPFALTELQARVRALIRRHQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I +++++L+ + V + + LT KE+ ++ L L+ + + +E+ +Y Sbjct: 121 GSSNSTIQVDNITLDLNNQQVLLDNKPVVLTPKEFAILSRLVLKAGSQVHREVLHQDIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+P ++V I LR K+ GK+ I T+ G GY+L Sbjct: 181 WNDDPSSNSLEVHIHNLRHKI-----GKDRIRTLRGFGYLL 216 >gi|110799600|ref|YP_696918.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168210169|ref|ZP_02635794.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213656|ref|ZP_02639281.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168215869|ref|ZP_02641494.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|169344243|ref|ZP_02865225.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182626272|ref|ZP_02954029.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674247|gb|ABG83234.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|169297702|gb|EDS79802.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170711758|gb|EDT23940.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714853|gb|EDT27035.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177908451|gb|EDT70989.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182382158|gb|EDT79637.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 227 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++++ + + + ENF V + GE+G+ + D ILD+ L + GF Sbjct: 1 MKILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR + + +L+ DK+ GLQ GADDY+ KPFN E+ R++A++RR Sbjct: 61 EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120 Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + I + ++L ++++ + I +T KE+ ++++ T++ LN Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180 Query: 177 HLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ D +P KI+DV I +LR K+ + YIETVWG GY Sbjct: 181 LVWGIDFFGDP--KIVDVNIRRLRSKIEENSSKPKYIETVWGTGY 223 >gi|300857600|ref|YP_003782583.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685054|gb|ADK27976.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205340|gb|ADL09682.1| Two-component regulatory protein [Corynebacterium pseudotuberculosis C231] gi|302329894|gb|ADL20088.1| Two-component regulatory protein [Corynebacterium pseudotuberculosis 1002] gi|308275579|gb|ADO25478.1| Two-component system transcriptional regulatory regulatory protein [Corynebacterium pseudotuberculosis I19] Length = 233 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 16/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + I L+ E + V + G +L Y D +ILD+ L D G+ Sbjct: 5 RVLVVDDEPQMVQIISYALELEGWEVLSAASAQKGWQLLGEYRCDLVILDVMLPDASGYA 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + +R + +TPV +L+ + +++V GL++GADDY++KPF+ +ELV R +A+VRRS Sbjct: 65 LCERIRASGDVAATPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVRRS 124 Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G Q IV G +SVN V + G ++ T E ++++ L N ++ + LN Sbjct: 125 GGIVQQESQEIVVGKVSVNPITHAVAIDGRKVDTTATEGKLLQALVSHPNEVVSVKRLLN 184 Query: 177 HLYD------GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D GR+ ++ +LRKKL NA + I +V G+GY+ Sbjct: 185 QVWDTTATQGGRN-----MVKSTTYRLRKKLENAGLPADSILSVRGQGYIF 230 >gi|227543824|ref|ZP_03973873.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300908892|ref|ZP_07126355.1| response regulator [Lactobacillus reuteri SD2112] gi|227186201|gb|EEI66272.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300894299|gb|EFK87657.1| response regulator [Lactobacillus reuteri SD2112] Length = 237 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 130/226 (57%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + + D E +L + IILDL + +I G Sbjct: 9 MKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEIDG 68 Query: 60 FEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 +V++ RV K S P+ +LS ++ DK++GL +GADDY++KPFN E++AR+++++RR Sbjct: 69 MDVIK--RVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 126 Query: 119 SRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S+G + ++ G L +N D+ V+ ++G I LT E+ ++ LL+ N + + Sbjct: 127 SQGEVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADD 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 187 IFERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 232 >gi|172036545|ref|YP_001803046.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171697999|gb|ACB50980.1| two component transcriptional regulator, winged helix family [Cyanothece sp. ATCC 51142] Length = 225 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D+ L + +L E + V V D G+ G EL +D +ILD L PG Sbjct: 1 MKILLVDDEAELTEPLYHILSHEGYEVDVADDGQKGYELALQNTYDLLILDWMLPRKPGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + PV L+ +++D+V GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 SICQELRSQGKNAPVLFLTAKDTLDDRVIGLDAGADDYLVKPFELRELMARVRALLRRSA 120 Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ + DL ++ D + QG ++L+ KE +++ + LT + Sbjct: 121 ASVETNGINRLKVADLELDSDNQVAYRQGRMVNLSDKEVKLLAYFMEHPHQLLTHDQIYQ 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L++ ++P ++ I LR+K+ I TV+G+GY Sbjct: 181 SLWEEPEKPSSNVLAALIRLLRRKIEEEGP---LIHTVYGKGY 220 >gi|26990917|ref|NP_746342.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24985936|gb|AAN69806.1|AE016619_4 DNA-binding response regulator [Pseudomonas putida KT2440] Length = 227 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD +A I L ++ V D + + +FD +ILDLGL D G Sbjct: 1 MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR + PV +L+ ++ D+V GLQ+GADDY+ KPF+ EL AR+ ++RR Sbjct: 61 KLLHRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G L + + + G + L+ +E +++ L L+ E + +Y Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL N +ETV G GY L Sbjct: 181 FSDEVESNALNVHIHHLRRKLGN-----GIVETVRGLGYRL 216 >gi|45655829|ref|YP_003638.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602800|gb|AAS72275.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 243 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 8/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD + + I L S +++ + GE+G++ K D +ILDL L DI G EV Sbjct: 6 ILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R +TP+ I++ + D++ GL+ GADDYI+KPF+ EL R+ RR Sbjct: 66 CRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWDKK 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A I+ G L ++ + V ++ + ++++ KE+ +++L++ ++EM Sbjct: 126 AGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSREMI 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + ++ID + ++R KL + +IET+WG GY +N Sbjct: 186 LEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 235 >gi|266624011|ref|ZP_06116946.1| KDP operon transcriptional regulatory protein KdpE [Clostridium hathewayi DSM 13479] gi|288864175|gb|EFC96473.1| KDP operon transcriptional regulatory protein KdpE [Clostridium hathewayi DSM 13479] Length = 232 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD A+ + I L+++++ GE I + D ++LD+GL DI G ++ Sbjct: 6 ILVVEDDAAVRNLITTTLETQDYRFLTASTGEAAILEAVSHNPDIVLLDMGLPDIDGVDI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 ++ +R + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+RA RR + Sbjct: 66 IKKIRTWSL-MPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRATQRRLIAT 124 Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +G Q+ G L ++ A V ++ +HLT EY+++ LL+ LT Sbjct: 125 QGVMPAQQTFFENGRLRIDYAAGCVFLEDTELHLTPIEYKLLCLLAKNIGKVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +V + VF+ LRKK+ N YI+T G GY Sbjct: 185 EIWGSSWDNDVASLRVFMATLRKKIENTQDAPQYIQTHIGVGY 227 >gi|294791476|ref|ZP_06756633.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304] gi|294457947|gb|EFG26301.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304] Length = 249 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F+V G + I++ D I++D+ L DI GF V Sbjct: 9 IVVVDDEPSIRDLVSASLHFSGFDVTTATNGTEAIDVIMQTNPDLIVMDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + PV L+ +DKV GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 69 TRRIRQQGMEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTKEQ 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ +I DL +N D+ V G I L+ EY+++ L + L+K L+H++ Sbjct: 129 AEDDPIIRVADLEINEDSHDVTRHGMLIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLS---------NAAGGKNYIETVWGRGYVLR 222 + I++ +I LRKK+ N I+T G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGVVYTDDEGNEQKVAPIIQTKRGMGYMIR 239 >gi|170755164|ref|YP_001779900.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] gi|169120376|gb|ACA44212.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] Length = 228 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 131/227 (57%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60 +IL+IEDD+ + ++L L+ +++ + + G + +L K + D +ILDL L DI G Sbjct: 3 KILIIEDDEDIRDILKLYLEGQSYEILEAENGAKAMKQLVK--QPDLVILDLMLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +++R K P+ +++ ++ +DK+ GL GADDYI+KPFN E+VAR++A +RR + Sbjct: 61 SICKSIR-KKYYYPIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYK 119 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++ I L++N +K V + I LT E++++E L RK L+ E Sbjct: 120 QYDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEALLKRKGEVLSGEELF 179 Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N ++ D I V + LR+K+ ++ YI+TVWG GY++ Sbjct: 180 NLIWEDEYYSKSTNTITVHVRNLREKMDDSFEKPEYIKTVWGVGYII 226 >gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 230 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA + L E + V V GE+ + + D +ILD L + G EV Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYVVGVAGDGEEALTMASERAPDLVILDWMLPKVSGIEV 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + P+ +L+ D++RGL +GADDY+ KPF+ EL AR+RA++RR R Sbjct: 65 CRRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVLRRIR 124 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A I GD+ ++ A V+ QG +HL E+++++ L ++E L+ ++ Sbjct: 125 PGLADDRITVGDIVIDRVAHRVKRQGKEVHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I +LRK L+ G + I TV GY L +A Sbjct: 185 GSDVYVEARTVDVHIGRLRKALNGDVDG-DPIRTVRSAGYSLDLDA 229 >gi|89889297|ref|ZP_01200808.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] gi|89517570|gb|EAS20226.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] Length = 238 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD + +E+ +K N V + G +E + +FD I+LDL + + G E Sbjct: 9 QILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR K +TP+ +++ + DKV GL+ GADDYI+KPF+ EL AR +A++RRS Sbjct: 69 VCRELRKTK-NTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDA 127 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + GDL VN++ + V ++G +I L+ KE+ ++ LL+ + ++ Sbjct: 128 ANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSEL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L+ ++ ++ I +LR K+ G YI T WG GY E+ Sbjct: 188 LDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237 >gi|239979030|ref|ZP_04701554.1| two component system response regulator [Streptomyces albus J1074] gi|291450908|ref|ZP_06590298.1| two component system response regulator [Streptomyces albus J1074] gi|291353857|gb|EFE80759.1| two component system response regulator [Streptomyces albus J1074] Length = 221 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A IE L++ F V GE + FD ++LD+GL GF Sbjct: 3 RILIVEDEERIASFIEKGLRANGFTTTVAADGESAHDYALTGGFDLVLLDIGLPGRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 VLR LR A+++ PV +L+ S+ D V GL+ GADD+++KPF EEL+AR+R +R +R Sbjct: 63 VLRDLREARVTAPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G+++++L + + LT +E+ ++EL L++E L+ ++ Sbjct: 123 APEVTVLRCGEVTLDLRTRRARSGEETVDLTAREFVLLELFLRHPGQVLSREQILSQVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P I+DV++ LR+KL G + IETV G GY L + Sbjct: 183 YDFDPGSNIVDVYVRALRRKL-----GAHRIETVRGMGYRLPQG 221 >gi|299821621|ref|ZP_07053509.1| response regulator [Listeria grayi DSM 20601] gi|299817286|gb|EFI84522.1| response regulator [Listeria grayi DSM 20601] Length = 239 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 137/233 (58%), Gaps = 15/233 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ + +++ L+ E++ + D G+D +++ Y++D I+LD+ + G Sbjct: 5 IKVLIVDDEDRIRRLLKMYLERESYLIDEADNGDDALDMALKYDYDVILLDVMMPGKDGI 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R+AK +TP+ +L+ ++V+G + GADDYI KPF+ E+V R++A++RR+ Sbjct: 65 EVCKEIRMAK-ATPIVMLTAKGEESNRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAS 123 Query: 121 GHAQ---SLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 G Q +L+ GD L+++ ++ V + G +++LT KEY ++ ++ ++ Sbjct: 124 GGEQGKDTLLSIGDTITFPNLTIDNESHLVTINGEKVNLTPKEYDLLYFMARTPERVHSR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKL---SNAAGGKNYIETVWGRGYVL 221 E L ++ +++ ID + +LR+KL S AG I TVWG GY L Sbjct: 184 EALLKEIWRYDFVGDLRTIDTHVKRLREKLYDISEEAG--KMIVTVWGLGYKL 234 >gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 229 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD ALA +E + E ++V T G++ + L D ++LD + G E Sbjct: 5 KLLLVEDDTALAELVEYRFRGEGYDVRTTADGDEALLLAAEDTPDLVLLDWMIGGTSGIE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR K + P+ +L+ S +D+VRGL++GADDY++KPF+ EL+AR+ A++RR Sbjct: 65 VCRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPRELIARVGAVLRRV 124 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A I GDLS++ A V + I + E++++ ++ L+ + Sbjct: 125 RPALAGETITVGDLSLDPTAHRVTRKAQSIKIGPTEFRLLRHFMEHPGRVFSRGQLLDAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E++ +DV I +LR+ ++ G + + TV GY L Sbjct: 185 WGSGSDIELRTVDVHIRRLRQAIA-IPGAPDPVRTVRSAGYAL 226 >gi|319956010|ref|YP_004167273.1| two component transcriptional regulator, winged helix family [Nitratifractor salsuginis DSM 16511] gi|319418414|gb|ADV45524.1| two component transcriptional regulator, winged helix family [Nitratifractor salsuginis DSM 16511] Length = 231 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 116/228 (50%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD LA + L V + G+ +FD +ILDL L + G Sbjct: 6 MKILIIEDDPELAMVLSSYLSKHGMEVTAVEDPYIGLSTLTQKDFDLVILDLTLPGMDGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ +R P+ I S I DKV G++ GADDY+ KP++ ELV RI+ I+RR+ Sbjct: 66 EVVEKIR-EHSDIPIIISSARDDITDKVIGMERGADDYMPKPYDPRELVTRIKTILRRTG 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +L + + + + +G + LT E+ ++ +L N +++E L Sbjct: 125 GQKKKEEALFEL--DKEGRVIRFKGVPLELTAAEFDVLSMLIQHMNAAVSREQLLYESEH 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 DE VK IDV I ++RKK++ YI V G GY+L + DE Sbjct: 183 IDDESSVKNIDVIISRIRKKIAKIDPNHTYIRPVRGVGYLLTDKPTDE 230 >gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635] gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635] Length = 244 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + +++ L+ E+F ++ G++ +L + I+LDL L ++ G +V Sbjct: 8 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNYACILLDLMLPEMDGIQV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR K TP+ +L+ ++V G +SGADDYI KPF+ E+V R++A++RR Sbjct: 68 ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 126 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S HA+ +I L ++ DA V ++LT KEY+++ L+ N +E Sbjct: 127 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230 L ++ +++ +D + +LR+KL+ + + I+TVWG GY + DE Sbjct: 187 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 243 >gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18] gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 234 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G + +E D I+LD+ + + GFE Sbjct: 6 KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAENPDLIVLDVMMPGMDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR +TPV L+ + EDKV GL +G DDY++KPF+ +E++ARIRAI+RRSR Sbjct: 66 VTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRRSRS 125 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ L++N+D V + I L+ E+ ++ L L N L+K L+H+ Sbjct: 126 VQEEDDAVLRVDALTLNVDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222 ++ + I++ +I LR+K+ +N + I T G GY++R Sbjct: 186 WEYDFNGDSSIVESYISYLRRKIDNNRENHEPLIHTKRGVGYMIR 230 >gi|268316384|ref|YP_003290103.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333918|gb|ACY47715.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 236 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 R+L+IEDD + ++ L L++ + V GE G E +D IILD L GF Sbjct: 5 RLLIIEDDAEVREALALCLETAGYEVDAVATGEAGREKAITVPGYDLIILDARLPGRDGF 64 Query: 61 EVLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EVLR LR + TPV +L+G++ E +++G + GADDY++KPF EEL+AR+ A++RR+ Sbjct: 65 EVLRELREEDGVMTPVLMLTGLNDREHRLKGFELGADDYVAKPFAPEELLARVEAVLRRA 124 Query: 120 RGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + Q G + V+L TV G + LT E++++ L L T+T+E L Sbjct: 125 KRRPQPEKRRFRVGGIEVDLVDGTVTRDGQPVPLTDMEFRLLRYLILHHGRTVTREQLLR 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + + ID I LRK + I++V+G GY L Sbjct: 185 EVWELPPTVQTRTIDRHINALRKIMDGEDETSWPIQSVYGIGYRL 229 >gi|228955353|ref|ZP_04117360.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072574|ref|ZP_04205776.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229082333|ref|ZP_04214796.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229181381|ref|ZP_04308710.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228602117|gb|EEK59609.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228700765|gb|EEL53288.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228710550|gb|EEL62523.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228804329|gb|EEM50941.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 220 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 5/222 (2%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +I+++++ A I L E + G+ + ++D IILD I G E+ R Sbjct: 1 MIKNERSSAKKIVSGLTQEGHFILKLHNENQGLNIAYEQDWDIIILDWDSLSISGPEICR 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 +R+ K +TP+ I++ S ED + GLQ+GADDYI KPF KEELVAR++AI+RRS + Q Sbjct: 61 QIRLVK-TTPIIIVTNNISSEDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDYNQQ 119 Query: 125 ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 120 NETNFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 180 DVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 220 >gi|126666867|ref|ZP_01737843.1| Two comoponent transcriptional regulator, winged helix family protein [Marinobacter sp. ELB17] gi|126628583|gb|EAZ99204.1| Two comoponent transcriptional regulator, winged helix family protein [Marinobacter sp. ELB17] Length = 228 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 117/225 (52%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD L + L ++ F V G+DG+ L + D ++LD+ L DI G + Sbjct: 4 RVLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESCDIVVLDIMLPDINGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR LRV+ PV +L+ D++ G + GADDYISKP N ELVAR+ A++RR Sbjct: 64 VLRQLRVSA-HLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRRIAW 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + GDL + D + V G + LT EY+++++L + + K + Sbjct: 123 DQKADLDDSRSYGDLRLEPDHRRVRQNGTPLDLTATEYEVLQVLLAHAGSVVRKTDLMQW 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R E + +D+ I LRKKL N + IETV G GY R Sbjct: 183 ALGRRLETYDRTLDMHISNLRKKLGNEEPPR--IETVRGLGYSYR 225 >gi|116329782|ref|YP_799501.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332664|ref|YP_802381.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|294653520|ref|NP_714877.2| two-component response regulator [Leptospira interrogans serovar Lai str. 56601] gi|116122675|gb|ABJ80568.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116127531|gb|ABJ77623.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|293630770|gb|AAN51892.2| response regulator [Leptospira interrogans serovar Lai str. 56601] Length = 241 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 8/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD + + I L S +++ + GE+G++ K D +ILDL L DI G EV Sbjct: 4 ILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDGIEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R +TP+ I++ + D++ GL+ GADDYI+KPF+ EL R+ RR Sbjct: 64 CRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWDKK 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A I+ G L ++ + V ++ + ++++ KE+ +++L++ ++EM Sbjct: 124 AGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSREMI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + ++ID + ++R KL + +IET+WG GY +N Sbjct: 184 LEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233 >gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 241 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 131/235 (55%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + + L+ E + + + GE ++ ++D I+LDL L + G + Sbjct: 9 RILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKKGLEIDYDLILLDLMLPGMDGVD 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR K +TPV +L+ ++V G ++G DDY+ KPF+ ELV R++A++RRS Sbjct: 69 VCRELRNKK-ATPVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRRSSA 127 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A ++IV +L+++ DA V G + LT KEY+++ L+ + T+E Sbjct: 128 TAFLSTETETHNVIVFPELTIDHDAHEVRAGGTEVSLTPKEYELLHYLASSPDKVFTREE 187 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKD 227 L +++ +++ +D I +LR+KL+ A+ I TVWG GY L E KD Sbjct: 188 LLRDVWNYEFFGDLRTVDTHIKRLREKLNRASPKAAAMIHTVWGVGYKL-EVPKD 241 >gi|325687129|gb|EGD29152.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 234 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 119/204 (58%), Gaps = 5/204 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED+K L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEKQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179 Query: 181 GRDEPE---VKIIDVFICKLRKKL 201 +DE E + ++I LR+KL Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203 >gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 240 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 130/237 (54%), Gaps = 10/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ + V GE+ ++ + + D I+LDL L + G E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEKPDLIVLDLMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RRS Sbjct: 64 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123 Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + S ++ GDL + D + +++ LT KE++++ L K LT+ Sbjct: 124 ASPSFDGQNDVKDGQLIIGDLKILPDHYEAYFKSNQLELTPKEFELLLYLGKHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ YI+T+ G GY L E +E Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIETNTKKPIYIKTIRGLGYKLEEPKMNE 240 >gi|329938569|ref|ZP_08287994.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329302542|gb|EGG46433.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 243 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + L+ E + V + + + DA++LD+ L D G Sbjct: 16 VRVLVVDDEPDLAEVVTGALRYEGWEVRSAASASAALCEARAFRPDAVVLDIMLPDRDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VLR LR + V L+ ++ED++ G+ +G DDY++KPF+ ELVAR+R ++RR+ Sbjct: 76 SVLRDLRSGQPHVCVLFLTARDTVEDRITGITAGGDDYVTKPFSLGELVARLRGLLRRAG 135 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A SL+V GDL ++ DA V G + L+ E+Q++ L L+K L+ Sbjct: 136 MTRERAADSLLVVGDLELDEDAHEVTRGGDPVDLSPTEFQLLRCLMRHPRQVLSKTQLLD 195 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++++I LRKK+ + G I TV G GYVLR Sbjct: 196 LVWSYDFGGQAHVVELYISYLRKKIDS--GRDPMIHTVRGAGYVLR 239 >gi|319793996|ref|YP_004155636.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315596459|gb|ADU37525.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 243 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 +I++++DD + + L E F V V EDG L + D I+LDL + Sbjct: 10 KIVIVDDDARIRDLLRRYLTQEGFEVIV---AEDGKALNRILLRDTVDLIVLDLMMPGED 66 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G V R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+AR+ A++RR Sbjct: 67 GLSVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRR 126 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + + G + +L ++T++ G + LT E+ M++ L L+ Sbjct: 127 RPPLEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLS 186 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L L GR+ EP + +DV I +LRK + + A YI+TVWG GYV Sbjct: 187 REK-LAQLARGREFEPFDRSLDVQISRLRKLVESDAAAPRYIQTVWGVGYVF 237 >gi|315651729|ref|ZP_07904734.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315485984|gb|EFU76361.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 223 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 122/202 (60%), Gaps = 2/202 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED+ L+ + +L + + V G+ +E +D +I D+ + + GF Sbjct: 1 MKILLAEDEVGLSKAYAQVLIMQGYEVEQVYDGKAALEAANSSTYDLMIFDVMMPKMSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 EVL+ALR A +T V +L+ MS ++DK+ GL+ GAD+Y++KP +ELVARIR++ RR Sbjct: 61 EVLKALREAGNTTYVIMLTAMSELDDKIEGLELGADEYLTKPIPLKELVARIRSLERRID 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++++ G + +N+ + + + + I L GKE +++E+L L KN L+ E NH++ Sbjct: 121 TNYNENVLTFGSVRLNVSQQELSAK-NSIILAGKETKLMEVLMLNKNKKLSTEYIYNHVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKL 201 D+ + + ++I L++KL Sbjct: 180 SKDDDSDAGYVWIYISYLKQKL 201 >gi|218533540|ref|YP_002424355.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218525843|gb|ACK86427.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] Length = 225 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 1/220 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD A + L V G +G + +DAIILD L + G Sbjct: 3 RLLLIEDDAETAREVHGDLCGRGHVVGWASTGPEGAACARDEAWDAIILDRMLPGLDGLS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR A TP +LS + +++++RGL++G DDY++KPF EL ARI A++RR Sbjct: 63 VLQDLRRAGNRTPALVLSTLGDVDERIRGLRAGGDDYLAKPFVLAELAARIEALLRRPVD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++++ G L ++L T + L +E +++E L R +T+ + +++ Sbjct: 123 TRETILRVGSLEIDLIGGTGRRGARDLDLLPRELKLLEYLMRRPGQVVTRTLLFEEVWNY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R P+ +IDV + +LR+KL A G + I V G G+ L Sbjct: 183 RFTPKSNLIDVHLGRLRRKL-EAEGEPSLIHNVRGIGFTL 221 >gi|28871373|ref|NP_793992.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato str. DC3000] gi|213971133|ref|ZP_03399252.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato T1] gi|301381851|ref|ZP_07230269.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato Max13] gi|302059020|ref|ZP_07250561.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato K40] gi|302132819|ref|ZP_07258809.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854624|gb|AAO57687.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato str. DC3000] gi|213924122|gb|EEB57698.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato T1] gi|330877449|gb|EGH11598.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331015588|gb|EGH95644.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 223 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G E+ ILD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALSSEEYAVAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+ +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGVLAYDLDTRRFTLSDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I++++ +LRKKL + G I T G GY+L Sbjct: 181 LDEEASPDAIEIYVHRLRKKLDGHSVG---IVTFRGLGYLL 218 >gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Clostridium sticklandii DSM 519] gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Clostridium sticklandii] Length = 231 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ ED+K ++ I+ L+ E + + GED ++ E + IILD+ L + GFE Sbjct: 4 RVLIAEDEKPISDIIKFNLEKEGYEIITAYDGEDALKKALNEELELIILDIMLPSMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K S P+ +++ DK+ GL+ GADDYI+KPF+ ELVAR++A VRR Sbjct: 64 ICKRVR-EKSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSIRELVARVKANVRRQEM 122 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I DLS++L V+ I LT +E+++++ L+ +K+ ++E L Sbjct: 123 NINADQQEKEIIKNKDLSIDLMKYEVKKGSTSIDLTVREFELLKFLAKQKDQVFSREQLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +DV + +LR+K+ + + YI T G GY + Sbjct: 183 ERVWGYEYYGDIRTVDVTVRRLREKVEDDSSNPTYIMTKRGVGYYFK 229 >gi|227879192|ref|ZP_03997064.1| response regulator [Lactobacillus crispatus JV-V01] gi|256844016|ref|ZP_05549503.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256849420|ref|ZP_05554852.1| two-component system response regulator [Lactobacillus crispatus MV-1A-US] gi|262046087|ref|ZP_06019050.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380700|ref|ZP_06626749.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1] gi|312976908|ref|ZP_07788657.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] gi|227861195|gb|EEJ68842.1| response regulator [Lactobacillus crispatus JV-V01] gi|256613921|gb|EEU19123.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256713536|gb|EEU28525.1| two-component system response regulator [Lactobacillus crispatus MV-1A-US] gi|260573417|gb|EEX29974.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290922740|gb|EFD99693.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1] gi|310896236|gb|EFQ45301.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] Length = 228 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPVAAYSGKEAITKLTTTPDIVLMILDVMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IDVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ ++ G L +N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G++ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGY 224 >gi|154504471|ref|ZP_02041209.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149] gi|153795246|gb|EDN77666.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149] Length = 234 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL +EDD A+ + I L+++++ + G I + D ++LDLGL D+ G EV Sbjct: 6 ILAVEDDTAVRNLITTTLETQDYRFHTAANGAQAILEAASQKPDIMLLDLGLPDMDGVEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 ++ +R + + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R I+RR + Sbjct: 66 IKKIR-SWSNLPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVILRRLQYM 124 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + V GDL ++ + V ++G +H+T EY+++ LLS LT Sbjct: 125 ESSSSQEEKEFVNGDLRIDYVSGCVYLKGQELHMTSTEYKLLILLSKNVGKVLTHTYITK 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +V + VF+ LRKK+ YI+T G GY Sbjct: 185 EIWGSAWDNDVASLRVFMATLRKKIEENPSQPKYIQTHVGIGY 227 >gi|75677094|ref|YP_319515.1| two component transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74421964|gb|ABA06163.1| two component transcriptional regulator, winged helix family [Nitrobacter winogradskyi Nb-255] Length = 224 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+L++ED + LA + L++ + + +T+L D + A+ILDLGL D G Sbjct: 1 MRVLIVEDSEELADLLAKGLRAAGYQIDLLTNLA-DAASALGTTRYAALILDLGLPDGDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +LR LR K P+ +L+ +ED+V GL+SGADDY+ KPF+ +ELVAR+ A++RR Sbjct: 60 LSILRELRHRKDPLPILVLTARGGVEDRVSGLRSGADDYLVKPFSFDELVARLEALLRRP 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + +++ + + + V +LT +E ++ELL RK ++K++ + ++ Sbjct: 120 GQLLGSSLRLANVTFDSEGRQAFVDMKPQNLTAREIAVLELLLRRKGNVVSKKLLEDQIF 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++V++ +LRK+L + G K I T+ G GYV+ E+ Sbjct: 180 GLTGDVASNAVEVYVHRLRKQLLD-IGAKVKISTIRGVGYVMMES 223 >gi|228960939|ref|ZP_04122572.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798835|gb|EEM45815.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G++ +++ IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYNLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A I R R Sbjct: 63 ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + + T KE+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225 >gi|95928685|ref|ZP_01311432.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135475|gb|EAT17127.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 228 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD L + L +E V G DG +D +ILD+ L + GF+ Sbjct: 3 KILIIDDDNELCELLTDYLTTEGLQVSCVHNGSDGARQA-VEHYDLVILDVMLPGMNGFD 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR +R + PV +L+ D++ GL+ GADDY+ KPFN ELVARIRAI RR+ Sbjct: 62 VLRQVRQSS-EVPVVMLTARGEDIDRIVGLELGADDYLPKPFNPRELVARIRAIQRRTDN 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + + GDLS++ + V I LT E+ ++ +L +++E ++ + Sbjct: 121 RNQMDAPLRVGDLSLDPGGRQVRCHDTEIVLTSVEFSLLHMLLSHAGQVVSREDMVSQVL 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 P + IDV I +RKKL G+ I+T+ G GY Sbjct: 181 GRHLSPYDRSIDVHISSVRKKLGQTPSGRERIKTIRGVGY 220 >gi|333029328|ref|ZP_08457389.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332739925|gb|EGJ70407.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 222 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M I +IED+ + + ++ L+ E +NV + GEDG+ + D ++LD L + G Sbjct: 1 MHIAIIEDEIGITNFLKQGLEEEGYNVTIAHNGEDGLSMVLEKCPDLVLLDWMLPQMQGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R A STP+ L+ +I + + GLQ+GA+DYI KPF+ EL+ARI R Sbjct: 61 DVCRLIRQADQSTPILFLTAKDTINETIEGLQAGANDYIKKPFSFAELLARIEVHFREKE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L + G++ +N V G I LT +E++++E L K ++++ + +++ Sbjct: 121 VLKNQLKL-GNILLNKSTYQVIKSGEEIPLTQREFELLEFLIANKGEVCSRQLIIEKIWN 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +IDVFI +RKKLS + YI+T+ G GY+ EN Sbjct: 180 IDFDYDTGVIDVFINAIRKKLS-MDKDEGYIKTIRGVGYIAIEN 222 >gi|220906986|ref|YP_002482297.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863597|gb|ACL43936.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 228 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +A +E L+S F V + ++L FD +ILDLGL G + Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR S P+ IL+ I DK+ + GADDY++KPF EEL+ R++A +R + G Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S++ ++ ++L + V+V + L+ +E+ + E L++E L+ Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +P I+DV++ LRKKL N IETV G GY L+ Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGN-----ELIETVRGMGYRLK 222 >gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 228 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 7/221 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + IE+ML + + Y G + ++ + D ++LD+ + GF V Sbjct: 5 VLIVDDEQDMRNLIEMMLNNSDIETYTAASGTEAYDIIVREKIDLVLLDVMMPHEDGFVV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R A + P+ L+ + EDKV+GL G DDYI KPF +EL ARI A++RRS + Sbjct: 65 CQSIR-AMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVLRRSGAN 123 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +V G + ++ A+ V V G I LT KE++++ L T+E L + Sbjct: 124 IAELQQKYVVFGPIKIDEIARKVSVHGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +D + +D I LR KL A +I+TVWG GY Sbjct: 184 WDIDYVGGTRTVDTHIKTLRIKLGKEAAA--HIQTVWGVGY 222 >gi|329904416|ref|ZP_08273802.1| DNA-binding heavy metal response regulator [Oxalobacteraceae bacterium IMCC9480] gi|327547984|gb|EGF32724.1| DNA-binding heavy metal response regulator [Oxalobacteraceae bacterium IMCC9480] Length = 218 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 114/201 (56%), Gaps = 5/201 (2%) Query: 26 NVYVTDLGEDG---IELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 N YV DL DG + L ++D I+LD+ L I G+EVL+ LR K +T V L+ Sbjct: 18 NGYVVDLARDGTTGLHLAVQEDYDLIVLDVMLPGIDGWEVLKKLRETK-ATAVLFLTSRD 76 Query: 83 SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVE 142 + D+V+GL+ GADDY+ KPF EL+ARIR ++RR+ + DL +++ + V Sbjct: 77 DVNDRVKGLELGADDYLIKPFAFVELLARIRTVLRRNPQREADTMNVADLEIDVLKRRVI 136 Query: 143 VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202 G RI LT KE+ ++ LL R+ L++ + + ++D + + ++DV I +LR K+ Sbjct: 137 RDGQRIDLTAKEFALLHLLVRRQGEVLSRSLIASQVWDMNFDSDTNVVDVAIRRLRAKVD 196 Query: 203 NAAGGKNYIETVWGRGYVLRE 223 + K + T+ G GY+ E Sbjct: 197 DPFPNK-LVHTIRGMGYLFEE 216 >gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 228 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 127/222 (57%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ + I++ LKS FN + G++ L Y D ++LD+ + + G + Sbjct: 7 KVLIVDDDENICEVIDMYLKSVGFNTKIALNGKEAKMLYMDYNPDLVLLDMMIPQVDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL+ +R + PV +++ DKV L+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 VLKWIR-KQGERPVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYSV 125 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I DL ++ + V G I + KE++++ L+ KN T+E L ++ Sbjct: 126 DNDKNQVIKLSDLVIDSTSYKVIYDGKDIKMPPKEFELLYYLASNKNKVFTREQLLCEVW 185 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 G D P + + +DV + +LR+KLS GG+ + IETVWG GY Sbjct: 186 -GYDYPGDSRTVDVHVKRLREKLS---GGEQWQIETVWGVGY 223 >gi|160892844|ref|ZP_02073633.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50] gi|156865403|gb|EDO58834.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50] Length = 222 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L H I L E +NV G+ ++ + +D +I+D+ + G Sbjct: 1 MRILVVEDELDLNHIICNKLTKEGYNVDACFDGQAALDYLETASYDGVIMDIMIPKKDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R I PV L+ S +D VRGL +GA DY++KPF EL+AR+R ++R Sbjct: 61 SVLKTIRAEGIQVPVLFLTAKSETQDIVRGLDAGASDYMTKPFEFSELLARLRVMLRTVH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ G L ++ + V G + LT +EY ++E L KN +T+E +++ Sbjct: 121 ISNDSILNYGSLQIDTNNHRVVRDGVTVDLTVREYAILEYLVRNKNIVVTREQIRANIWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++DV+I LR+K+ + K I T+ G GY L Sbjct: 181 IDDDINSNVVDVYIRYLRRKIDDPFEEK-LIHTIRGVGYRL 220 >gi|152989694|ref|YP_001350106.1| two-component response regulator [Pseudomonas aeruginosa PA7] gi|150964852|gb|ABR86877.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 223 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 120/224 (53%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MRILL+ED LA S+ LK + V DL +DG+ E+ ILD+GL + Sbjct: 1 MRILLVEDHPQLAESVVQALKGAGWTV---DLLQDGVAADLALASEEYALAILDVGLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEVL LR + PV +L+ ++D+V GL GADDY++KPF EL AR++A++R Sbjct: 58 DGFEVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS + + G L+ +L + + + LT +E ++E + R ++KE Sbjct: 118 RSMLGGEQVQRCGALAYDLGTRRFSLDEQPLILTSREQAVLEAMIARPGRVMSKEQLAAQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +E I++++ +LRKKL GG I T G GY+L Sbjct: 178 VFGLDEEASADAIEIYVHRLRKKLE---GGAVRIVTFRGLGYLL 218 >gi|241767666|ref|ZP_04765303.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241361391|gb|EER57893.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 239 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILLIEDD LA ++ L + F D L + A++LD L D G Sbjct: 20 LRILLIEDDAPLAEALMAFLNARGFVCECAASLADARALLPAAHWAAVLLDWQLPDGEGL 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR + V +L+ I D++RGL +GADDY+ KP++ +EL+AR+RA+ RR Sbjct: 80 ALLPLLRRTLPDSAVIMLTARDQITDRIRGLDAGADDYLVKPYDPDELLARLRAVERRRS 139 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + LS++L V + G + +T KE+ ++ +++LR + T+E + LY Sbjct: 140 GVGSATLQLQGLSIDLARMVVTLDGQPVEITAKEWALLRVMALRPDRIHTRESLQDALYG 199 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++VFI LR+K+ G++ I+T+ G GY L +A Sbjct: 200 LDANASSNTLEVFISNLRRKI-----GRDRIQTLRGLGYKLNTSA 239 >gi|222111377|ref|YP_002553641.1| winged helix family two component heavy metal response transcriptional regulator [Acidovorax ebreus TPSY] gi|221730821|gb|ACM33641.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 227 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L ++ + G DG+ + ++D +ILD+ L + G+ Sbjct: 1 MKILIVEDEPKTGAYLRQGLSEAGYSCDLVPNGGDGLHMAIHGQYDLVILDVMLPGLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I+R R Sbjct: 61 QVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILR--R 118 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 GHA S T DL ++L + V G R+ LT KE+ ++ELL R L + + + Sbjct: 119 GHAGSEGTTLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +I+V + +LR K+ K I+TV G GYVL Sbjct: 179 VWDMNFDSDTNVIEVAMRRLRVKIDEGHPVK-LIQTVRGMGYVL 221 >gi|229096516|ref|ZP_04227487.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229102609|ref|ZP_04233313.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|229115490|ref|ZP_04244896.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228667903|gb|EEL23339.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228680836|gb|EEL35009.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228686722|gb|EEL40629.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 232 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 2/226 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + I L LK F V GE+ +++ + D +LD+ L I GF+V Sbjct: 7 ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCDHTVDVALLDVMLPGIDGFQV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + +L+ D V+GL GADDYI+KPF+ EL ARI++++RR H Sbjct: 67 CKTIREENKKMGIIMLTARVQDGDVVQGLGIGADDYITKPFSPVELTARIQSLLRRIEVH 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I +G S+N+ + + G + LT EY +++ L + + ++++ LN ++ Sbjct: 127 KEKTNTITSGPFSLNIIEERLYRDGQLVDLTPTEYMILQYLMNQSSKPVSRDEILNMIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E K++DV + +LR+K+ +I TVWG+GYV +E+ + Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232 >gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila DC2201] gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila DC2201] Length = 237 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G D + + + D +LD+ L DI GF Sbjct: 9 KLLVVDDEPNILELLATSLRFAGFEVVTAANGRDALLKAEAEDPDLAVLDVMLPDIDGFS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A P+ L+ +DKV GL G DDY++KPF+ +E+VARIRA++RR++ Sbjct: 69 VTRKLRAAGRHFPILFLTAKDDTDDKVAGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 128 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + L ++ DA V G I L+ E++++ L L N L+K L+H++ Sbjct: 129 LEEEDSRLKVDGLVLDDDAHEVFRGGREIDLSPTEFKLLRYLMLNPNRVLSKAQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I++ +I LR+K+ N + I T G GY+LR K Sbjct: 189 EYDFNGDASIVESYISYLRRKIDNDPEQPSLIHTKRGVGYLLRSADK 235 >gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family protein [Synechococcus sp. RS9916] gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family protein [Synechococcus sp. RS9916] Length = 229 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 122/220 (55%), Gaps = 1/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL +D+ + +E+ L++E F V G ++ + D +LD + + G ++ Sbjct: 8 VLLADDEANIVMLLEMELEAEGFTVLTASDGVTAMKTVRDTPPDLALLDWNMPGMTGLDI 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + PV +++ ++D+V L++GADD+I+KPFN E++AR +A++RRS+G Sbjct: 68 CRRLRDTGVFLPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRRSQGF 127 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ GDL +N +T + G + LT +E+ ++E L++ + H++ Sbjct: 128 SSDVLQVGDLVLNGAERTCAINGTPLVLTVREFDLLECFMRHPRQALSRAQLIQHVWGDD 187 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++DV++ LRKKL A G + I+TV G + LR Sbjct: 188 YFGDENVVDVYVRYLRKKL-EATGSQRVIQTVRGVVFALR 226 >gi|159185897|ref|NP_356842.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159141031|gb|AAK89627.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 224 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI----ILDLGLTD 56 MR+LL+ED++ +A ++ L F++ V +G ++L + D++ +LD L D Sbjct: 1 MRLLLVEDEREMAAALSAAL--HRFDIIVDTVGT--LDLARHAIMDSVHDLVVLDRQLPD 56 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G +++ LR+ ++ PV +L+ + D++ GL GADDY++KPF EEL+ARIRA++ Sbjct: 57 GDGIQLIEDLRLLPVTPPVIVLTAQGGLADRINGLNLGADDYLAKPFAVEELLARIRALM 116 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RR G + G L + + V ++G + LT +E ++E L R+ T+ + M Sbjct: 117 RRPAGTVKMTARLGALEFCFETREVRIKGEFLPLTRRELLILEALLRRQGRTVLRSMLEE 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +Y+ DE + +D I +LR+KL+ A G + + G GY++R Sbjct: 177 AVYNFDDEIQSNALDSHISRLRRKLAAADAGVE-VHGIRGVGYLMR 221 >gi|54301942|ref|YP_131935.1| DNA-binding response regulator [Photobacterium profundum SS9] gi|46915362|emb|CAG22135.1| hypothetical DNA-binding response regulator [Photobacterium profundum SS9] Length = 225 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD I L+ F V G G+ + E+ IILD L + G Sbjct: 1 MKILVIEDDLTTREFIAKGLREHGFVVDEAGDGHQGLMMATSCEYQLIILDRMLPILDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL A+R + TP+ ILS M S+ED+V GL +G+DDY++KPF EL+AR + +V+R Sbjct: 61 KVLAAIRATENQTPILILSAMDSVEDRVTGLTAGSDDYLTKPFALAELIARAQILVKRH- 119 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H+ + +VT DL +++ + V ++L KE+ +++ L +++ Sbjct: 120 -HSSTKVVTEYIYDDLRLDMKSHRVWRGERLLNLQQKEFLLLQYLMEHAENVVSRMSLFE 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +P+ +IDV I LRKKL G I T+ G GYVLR + Sbjct: 179 SVWSYHFDPKTNVIDVHIANLRKKLEE-NGELGLIHTIRGAGYVLRRS 225 >gi|322804927|emb|CBZ02486.1| DNA-binding response regulator [Clostridium botulinum H04402 065] Length = 227 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L+IED+ ++ + L+++ + V L +D + F+ D ++LD+ L D GF Sbjct: 3 FKVLVIEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFHPDLVLLDINLPDESGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R + K P+ +L+ + I DKV GL+ GADDYI+KPFN +E++ R++ +RR Sbjct: 63 ELCRHIN-DKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVN 121 Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + + + VNL+ + V + L +EY+++E +N ++E+ L Sbjct: 122 KYKEKSDEEFIYINKFVKVNLEGRIVFKDDEEVKLKPQEYELLEFFVKNRNIVFSREILL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ E EV+ +DV + +LR KL + + I+T +G GYV+R Sbjct: 182 NKVWGFDYEGEVRTVDVHVRRLRSKL-DKENATSIIDTAFGIGYVMR 227 >gi|300780103|ref|ZP_07089959.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300534213|gb|EFK55272.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 259 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ LA + L F+ G ++ + + D ++LDLGL ++ G E Sbjct: 33 RVLVVDDEQPLAQMVASYLIRAGFDTRQAYTGTQAVDEARRFSPDVVVLDLGLPELDGLE 92 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +R + +L+ + +DK+ GL GADDYI+KPF ELV R+ A++RR R Sbjct: 93 VCGRIRTFS-DCYILMLTARGTEDDKITGLTLGADDYITKPFGIRELVTRVHAVLRRPRT 151 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + G+L+++ A V+V + LT E++++ L+LR LT+ + Sbjct: 152 STIPPQVTTPLTVGELTIDPAAHKVQVGEVVVDLTRTEFELLVTLALRPGQVLTRHDLVT 211 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL G+ +IETV G GY Sbjct: 212 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIETVRGVGY 254 >gi|77361690|ref|YP_341265.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Pseudoalteromonas haloplanktis TAC125] gi|76876601|emb|CAI87823.1| putative response regulator in two-component regulatory system with CusS, regulation of copper resistance [Pseudoalteromonas haloplanktis TAC125] Length = 224 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED +AL S+++ L + F V T G +G+ + +D I+LDL L + G Sbjct: 1 MNILVIEDSEALRRSLQVGLGNLGFTVDETGDGSEGLSMALSGNYDLILLDLMLPSVDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +L+ALR + + V ILS S +DK+ GL GADDY++KPF+ EEL AR+ A++RR S Sbjct: 61 SILQALRSSNNQSRVLILSARSEPQDKINGLMKGADDYLTKPFSFEELHARVLALLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + Q+ + GD ++L KT+ Q H I LT EY++IE L L E+ + Sbjct: 121 LQNQQNTLTVGDCVLDLSLKTLHYQQHAIELTRNEYKIIECLFNAPERVLGLELISEAVV 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 D ++ I +RKK+ G+ I+ G GYV Sbjct: 181 GQFDMLSKNALEAHISTIRKKVRQ-FDGELPIKNKRGFGYV 220 >gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 237 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 130/230 (56%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++VY GE+ ++ + D I+LDL L + G E Sbjct: 4 KILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVEEVVPDLILLDLMLPKVDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VARQVRKSH-DMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRRQGS 122 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +QS I GDL+++ +A V +G +I LT +E++++ L+ +T+E Sbjct: 123 TSQSDKEANEENHEINIGDLTIHPEAYIVSKRGTKIELTHREFELLHYLAKHIGQVMTRE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 232 >gi|317404886|gb|EFV85256.1| winged helix family Two component Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 221 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD ++A +I+ L + F V V L + + + + A +LDL L D G Sbjct: 1 MRILLVEDDASIASAIQAGLGLQGFVVDAVGSLRQADLAVGTSHA-SACVLDLCLPDGDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L R + PV +L+ SSI +V L++GADDY+ KPF+ +EL AR++A++RR+ Sbjct: 60 VTLLAKWRARRQDLPVLVLTARSSIAQRVAALRAGADDYVLKPFDLDELAARLQALIRRA 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GH+ I G L++ L V + G R+ L +E +++ L LT + + LY Sbjct: 120 AGHSADRIDHGRLTLYLSRGEVLLDGARVTLQRRELALLKTLLQHPGQILTMDQLRDSLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E ++V I KLR+KL G IETV G GY L Sbjct: 180 GFDDRVESNAVNVHIHKLRRKL-----GAGLIETVRGWGYRL 216 >gi|326792137|ref|YP_004309958.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326542901|gb|ADZ84760.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 224 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+IED+ LA ++ +L+ + G G++ +D IILD+ L + G Sbjct: 1 MNLLVIEDEVRLAEALVQILQKNKYAALAAYDGITGLDHALTGIYDVIILDIMLPKLNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR KI TPV +L+ + D+V+GL GADDY++KPF +EL+ARIRA+ RR R Sbjct: 61 EVLKQLREQKIQTPVILLTAKDEVSDRVKGLDHGADDYLTKPFATDELLARIRALGRR-R 119 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + D+S+NL + + L KE++++E L ++KE L + Sbjct: 120 GELICDDTLHFEDISLNLSTYELSCGSKTVRLGLKEFRILEFLIRHGQHIVSKEELLEKI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E E ++V+I LRKKLS+ K I+TV G GY L Sbjct: 180 WGFDSEAEYNHVEVYISFLRKKLSHIH-SKVGIQTVRGVGYRL 221 >gi|229171105|ref|ZP_04298702.1| Two-component response regulator [Bacillus cereus MM3] gi|228612378|gb|EEK69603.1| Two-component response regulator [Bacillus cereus MM3] Length = 233 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R +K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ TV V G + LT +E+ ++ELL + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium zucineum HLK1] gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium zucineum HLK1] Length = 230 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +LA ++ L+ E + V GE+ + + D I+LD L + G E Sbjct: 5 RILIVEDEDSLATLLQYNLEKEGYEVAAAGDGEEALLQVQERLPDLIVLDWMLPKVSGIE 64 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR S P+ +L+ D++RGL +GADDY+ KPF EL ARIRA++RR Sbjct: 65 VCRRLRQRPESRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRRL 124 Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R G A+ + GD+ ++ A V+ G +HL E+++++ ++E L+ + Sbjct: 125 RPGLAEDRVRCGDIIIDRVAHRVKRNGAEVHLGPTEFRLLDHFMQHPGRVFSREQLLDAV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E + +DV I +LRK L NAA + I TV GY L +A Sbjct: 185 WGSDVYVEARTVDVHIGRLRKAL-NAADAGDPIRTVRSAGYSLDVDA 230 >gi|139438103|ref|ZP_01771656.1| Hypothetical protein COLAER_00644 [Collinsella aerofaciens ATCC 25986] gi|133776300|gb|EBA40120.1| Hypothetical protein COLAER_00644 [Collinsella aerofaciens ATCC 25986] Length = 230 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++AL +I L++ ++V G + ++L FD ++LDL L + G Sbjct: 7 MRILIVEDERALCATIARSLRNLAYSVDCCHDGREALDLLGVEVFDLVVLDLNLPHVDGM 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR T V ILS + DKV GL +GA+DY++KPF+ +EL ARIR++ R Sbjct: 67 TVLGELRKTDCETKVLILSARGEVSDKVAGLDAGANDYLTKPFHLDELAARIRSLTLRRF 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ L + A+ V + LT KE ++E L L + +++E + H++D Sbjct: 127 TQSDVVLTCRKLRFDTKARIASVDSETLSLTRKETGILEYLMLNQGRPVSQEELIEHVWD 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 V I LRKKL A G + I G GYV+ ++ Sbjct: 187 SSVNSFSNATRVHISSLRKKL-RIALGYDPIRNRIGEGYVMEDS 229 >gi|330466506|ref|YP_004404249.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809477|gb|AEB43649.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 222 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 119/220 (54%), Gaps = 6/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I L+ V V G+ G E+ +D ++LD L + G Sbjct: 1 MRVLVVEDERHLADAIARGLRKRGMAVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGMHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ L + T V +L+ ++ D+V GLQ GADDY+ KPF +ELVAR++A+ RR+ Sbjct: 61 QICAELASSGALTRVLMLTASGTVADRVEGLQLGADDYLPKPFAFDELVARVQALGRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI-ELLSLRKNTTLTKEMFLNHLY 179 A ++ DL V+ +T G + LT KE+ ++ ELL R ++ E L ++ Sbjct: 121 PAAPPVLELADLVVDPARRTATRGGAPVELTNKEFGVLCELLKAR-GAVVSSEELLERVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P I+ V + LR+KL G IETV G GY Sbjct: 180 DANTDPFTTIVRVTVMTLRRKL----GDPPLIETVVGAGY 215 >gi|317405506|gb|EFV85814.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 237 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A ++ L++ F V G G++ + FDA+ILD+GL + G Sbjct: 12 RILIVEDDHIIAGNLYTFLEARGFLPDVAYSGPAGLQRLEEQRFDAVILDIGLPGMDGHA 71 Query: 62 VLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR ++ PV +L+ S+EDK+ G GADDY++KPF E+ AR+ A+++R++ Sbjct: 72 VLHALRADRRLPVPVLVLTARDSLEDKLAGFSHGADDYLTKPFALLEVEARLLALIQRAK 131 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + V GDL+ + ++T + G +HLT K ++E L +++E + L+ Sbjct: 132 GSTVDTVRVFGDLAYDTRSRTASIGGKPVHLTRKATLILEALLRDPGRVVSREELESQLW 191 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G + P + + LR+ L++A G + IET+ G G+ L Sbjct: 192 -GSEPPSSDALRSQVHLLRRALADA--GFDGIETLHGTGWRL 230 >gi|300689792|ref|YP_003750787.1| response regulator, cheY family [Ralstonia solanacearum PSI07] gi|299076852|emb|CBJ49465.1| putative response regulator, CheY family [Ralstonia solanacearum PSI07] Length = 236 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 124/237 (52%), Gaps = 15/237 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+A+A I L V G +E D +ILDLGL I G Sbjct: 1 MRILLIEDDRAIASGIHAGLTQVGHRVLAVHDGVFAVEHLARQSHDLVILDLGLPGIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R STPV IL+ S++DKV GL +GADDY+ KPF ELVAR++A++RR Sbjct: 61 TLLSQYRARDRSTPVLILTARDSLQDKVGGLNAGADDYLLKPFEMLELVARVQALLRRRG 120 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + V G L ++ + + V + L+ +E+ ++ELL R+ ++K + Sbjct: 121 DNGEPMPRPDTVVGRLRMSGAERRIFVDAAALELSPREFAVLELLMQRQGRVVSKVQLQD 180 Query: 177 HLYD--------GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 HL G D I+V++ ++R+K+ + + I TV G GY+L+ A Sbjct: 181 HLASFGHALGEAGHDVVGDTAIEVYVHRVRRKIEQS---EAEIVTVRGFGYLLQARA 234 >gi|191639614|ref|YP_001988780.1| Response regulator [Lactobacillus casei BL23] gi|190713916|emb|CAQ67922.1| Response regulator [Lactobacillus casei BL23] gi|327383726|gb|AEA55202.1| Two component transcriptional regulator, winged helix family [Lactobacillus casei LC2W] gi|327386919|gb|AEA58393.1| Two component transcriptional regulator, winged helix family [Lactobacillus casei BD-II] Length = 233 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +LL+ED+ ALA S+ + EN +V G + + L K E + IILD L + GF Sbjct: 5 LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R + P+ +L+ I DKV GL GADDYI+KPF EELVAR+ +R +R Sbjct: 65 SVLRKIRQSS-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNR 123 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ DL V+ D K V+ + LT +EY+++ L ++ +++ L + Sbjct: 124 QAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAAV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + I+DV+I LR K+ + +G K I TV G GY+L N Sbjct: 184 WGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229 >gi|171058380|ref|YP_001790729.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775825|gb|ACB33964.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 232 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 13/231 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR LL EDD LA ++ L++ F V V D G L FD I+DLGL + G Sbjct: 1 MRALLAEDDAILADALSANLQAAGFEVEVADNGAVAEYLLIRQSFDVGIVDLGLPMVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ +R AK P+ IL+ + +E +V GL +GADDY++KPF+ EL ARIRA++RRS+ Sbjct: 61 TVVSRVRQAKPKLPLIILTALDGLEHRVAGLNAGADDYLTKPFDFPELEARIRAVLRRSQ 120 Query: 121 G---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 G + + V L + D + V G I L+ +E+ +++LL ++ +TK Sbjct: 121 GGEPASASTDDSPAATVVAQLQFDRDTRRATVAGQPIELSPREWLLLDLLLSQRRKVITK 180 Query: 172 EMFLNHL-YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E D + ++V+I +LR+KL + G I TV G GY+L Sbjct: 181 EQIAQAWSADLSESGGPSSLEVYIHRLRRKLEGSGVG---IRTVRGLGYLL 228 >gi|182416578|ref|ZP_02947999.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237667380|ref|ZP_04527364.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379575|gb|EDT77058.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237655728|gb|EEP53284.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDDK++A + L+ F + G G+E E+D I+LD+ L GFE Sbjct: 3 KILIVEDDKSIAELEQDYLEINGFKAEIALTGVSGLEKAINKEYDLILLDVMLPGKDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K P+ +++ +RGL GADDYI KPF+ ELVAR+ A + R Sbjct: 63 ICQEIRKVK-EIPILLVTAKKDDIYIIRGLGIGADDYIVKPFSPSELVARVTAHMNRYER 121 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 G +Q++I G LS+N D++ V + I L KE++++ L+ N +K+ Sbjct: 122 LTSMDKEHGKSQNIISIGRLSINCDSRRVYIGDTEIKLANKEFELLVFLASNPNIVFSKD 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + V I ++R+K+ YIETVWG GY Sbjct: 182 TLLDRIWGEESFGDTSTVTVHINRIREKIEIDTSNPQYIETVWGAGY 228 >gi|261250867|ref|ZP_05943441.1| two-component system response regulator QseB [Vibrio orientalis CIP 102891] gi|260937740|gb|EEX93728.1| two-component system response regulator QseB [Vibrio orientalis CIP 102891] Length = 218 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L ++ L+ + V G ++ F IILDL L D G Sbjct: 1 MRILIIEDDLLLGRTLVSSLERCGYTVDWLTEGSGVKQVLSLETFTLIILDLSLPDGDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L++LR AK P+ ILS S +D + GL SGAD+YI KPF+ EEL+ARIR IVRR Sbjct: 61 TLLKSLRQAKYDLPIIILSARDSNKDIILGLDSGADEYIGKPFSFEELLARIRVIVRRQS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I G+ +NL+ V+ + LT E++++ L + ++K L + Sbjct: 121 SSSTHIITKGNFELNLNDYIVKYNDEVLKLTKNEFKILSYLVSNNSLVVSKPQLLQIING 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++V I LRKKL N N I+T+ G GY + + Sbjct: 181 WSETSTENSVEVHIHNLRKKLPN-----NVIKTIRGIGYTIEK 218 >gi|228919194|ref|ZP_04082567.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229176851|ref|ZP_04304250.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188529|ref|ZP_04315571.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594957|gb|EEK52734.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606633|gb|EEK64055.1| Two-component response regulator [Bacillus cereus 172560W] gi|228840472|gb|EEM85740.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 233 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R AK P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|163759095|ref|ZP_02166181.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162283499|gb|EDQ33784.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 241 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD A + + V G+ G L +DA+++D L G Sbjct: 17 MKILIIEDDLETAAYLSRAFREAGITVDHASDGDSGFFLASENTYDALVVDRMLPKRDGL 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR TP ILS + ++D+V GL++G DDY++KP+ EL+ARI + RR Sbjct: 77 SIISELRRNGDDTPALILSALGQVDDRVTGLRAGGDDYLTKPYAFSELLARIEILGRRKG 136 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q GDL ++ + V G I L +EY+++E L +T+ M L H++ Sbjct: 137 ARDQETTYRVGDLELDRLSHEVRRAGQPIPLQPREYRLLEYLMKNAGQVVTRTMLLEHVW 196 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV I +LR K+ G+ ++TV G GY+++ Sbjct: 197 DYHFDPQTNVIDVHISRLRSKIEKDF-GEPLLKTVRGAGYMMK 238 >gi|28210164|ref|NP_781108.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Clostridium tetani E88] gi|28202600|gb|AAO35045.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Clostridium tetani E88] Length = 228 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 135/227 (59%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++IED+ ++ + LK E + V T ++ ++ K + + ++LD+ L D GFE Sbjct: 4 KIIVIEDEFSINDILTFALKEEGYRVKSTFSSQEARKIMKEFRPNLVLLDINLPDESGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + + K P+ +++ + + DKV GL+ GADDYI+KPF+ +E++ R+R +RR + Sbjct: 64 LCKFI-TCKYKIPILMITARNDLVDKVLGLELGADDYITKPFHIKEVMTRVRVALRRVKK 122 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ + + + ++ +NL+++ V I L KEY ++ L+ +N ++E L Sbjct: 123 YSVVKENKEFIELNDEVKINLESREVFKNNREIKLKPKEYDLLVFLAQNRNIVFSRETIL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++ + E++ +D+ + +LR KL ++ G++ IETV+G GYV+R Sbjct: 183 DRVWELEYDGEIRTVDIHVRRLRAKL-DSNNGQSIIETVFGVGYVMR 228 >gi|300855161|ref|YP_003780145.1| putative response regulator [Clostridium ljungdahlii DSM 13528] gi|300435276|gb|ADK15043.1| predicted response regulator [Clostridium ljungdahlii DSM 13528] Length = 217 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED+ +++ I+L L N+ GED +E + FD I+LD+ L I GF Sbjct: 2 IKILVVEDELPISNLIKLNLNMSNYECKTAFNGEDALEEIENDSFDLILLDVMLPKIDGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ++ + PV L+ +S+ DKV GL++GADDYI+KPF EL+ARI ++R Sbjct: 62 TLLE--KIKPLGIPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYN 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++I D+ +NL T G + LT KE++++ L KN LT+E + ++ Sbjct: 120 KNT-NVINFEDVEINLREMTARKAGEAVELTLKEFELLVFLVQNKNVVLTREKLIEKIWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ID I KLRKKL K+ I+TV+ GY L Sbjct: 179 YDYVGETRTIDNHIQKLRKKLQ----WKDKIKTVFKLGYRL 215 >gi|255282006|ref|ZP_05346561.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM 14469] gi|255267325|gb|EET60530.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM 14469] Length = 247 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 126/235 (53%), Gaps = 12/235 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA +EL L E + V G + +E+ +F I+LD+ L + G EV Sbjct: 11 ILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLNGLEV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116 LR L+ K TPV +L+ ++ DKV GL +GA DYI+KPF EEL+ARIR + Sbjct: 71 LRRLQQEK-PTPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGDT 129 Query: 117 ----RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RR + G L ++ V G I LT +E+QM++ L ++ LT+E Sbjct: 130 RRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTRE 189 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + LN + E ++DV+I LR K+ A K I+TV G GYV++ A D Sbjct: 190 VLLNRVCGYDYVGETNVVDVYIRFLRAKIDEAFQIK-MIQTVRGVGYVIKSEAPD 243 >gi|116496108|ref|YP_807842.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|116106258|gb|ABJ71400.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] Length = 233 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +LL+ED+ ALA S+ + EN +V G + + L K E + IILD L + GF Sbjct: 5 LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR +R + P+ +L+ I DKV GL GADDYI+KPF EELVAR+ +R +R Sbjct: 65 SVLRKIRQSS-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNR 123 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ DL V+ D K V+ + LT +EY+++ L ++ +++ L + Sbjct: 124 QAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAAV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + I+DV+I LR K+ + +G K I TV G GY+L N Sbjct: 184 WGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229 >gi|41407100|ref|NP_959936.1| hypothetical protein MAP1002c [Mycobacterium avium subsp. paratuberculosis K-10] gi|254774011|ref|ZP_05215527.1| hypothetical protein MaviaA2_04954 [Mycobacterium avium subsp. avium ATCC 25291] gi|41395451|gb|AAS03319.1| hypothetical protein MAP_1002c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 257 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 131/230 (56%), Gaps = 13/230 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKF--YEFDAIILDLGLTDI 57 +R+LL++D+ AL + +++ L E +V D+ +G E + KF D ++LD+ L D+ Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEG---WVVDIAHNGREAMAKFDRAAPDVLVLDIMLPDV 88 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L +R + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++R Sbjct: 89 DGLRILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLR 148 Query: 118 RSRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R+ A++L V GDL V+ ++ V + L+ E++++ L L++ Sbjct: 149 RASQQPAPTAETLKV-GDLVVDTASREVTRGDTPVSLSSTEFELLRFLMRNPRRALSRTE 207 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ +++ I+D++I LRKK+ + G + I TV G GY+LR Sbjct: 208 ILDRVWNYDFAGRTSIVDLYISYLRKKIDS--GREPMIHTVRGVGYMLRP 255 >gi|295693701|ref|YP_003602311.1| response regulator [Lactobacillus crispatus ST1] gi|295031807|emb|CBL51286.1| Response regulator [Lactobacillus crispatus ST1] Length = 228 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLSTTPDIVLMILDVMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IDVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ ++ G L +N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G++ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGY 224 >gi|323528170|ref|YP_004230322.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385172|gb|ADX57262.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 231 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ L+ S+ L S V GE + + ++ +ILD+GL + G Sbjct: 9 MRVLLVEDNPILSRSLTDALTSAKLTVDCMHDGESADHVLRTQDYALVILDIGLPKLDGL 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV +L+ S+E++VRGL GADDY++KPF EL AR RA++RR Sbjct: 69 EVLRRLRARRNAVPVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGH 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G SL G L+ + + + G + LT +E ++E+L LR + KE ++ Sbjct: 129 GQEASLAQCGTLTYDSVDRGFTLDGEPLALTPRERSVLEVLMLRNGRAINKETLSEKIFG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL ++ G I T+ G GY+L Sbjct: 189 LDESVNADAIEIYVHRLRKKLERSSVG---IVTLRGLGYLL 226 >gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 225 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 124/220 (56%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ + ++ +L+ E F V V + G D ++ D ++LDL L + G E Sbjct: 3 RVLVVEDEESYSDALSYVLRKEGFEVAVAETGPDALDEYDRAGADIVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RALR + + PV I+S + DKV GL+ GADDY++KP++ EL+ARI+A++RR + Sbjct: 63 VCRALR-TRGNVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVLRRGQD 121 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + G + ++++ V V G I L KE++++E+L LT+ ++ ++ Sbjct: 122 VELLPDTLEAGPVRMDVERHVVTVSGTEIRLPLKEFELLEMLLRNTGRVLTRGQLIDRIW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + K +DV + +LR KL ++ TV G GY Sbjct: 182 GADYVGDTKTLDVHVKRLRSKLEKDPSNPAHLVTVRGLGY 221 >gi|312891526|ref|ZP_07751040.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311295989|gb|EFQ73144.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 226 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI LIED+ +A I+ L+ + V V G GIEL + +D +ILD+ L + G + Sbjct: 3 RICLIEDEHKVAAFIKNGLEEHEYLVNVATDGARGIELIENNNYDLLILDIMLPVVSGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R P+ +L+ + +++DKV GL++GADDY+ KPF+ EL+ARI A++RR Sbjct: 63 VCKHVRATNPHIPILMLTALGAVDDKVAGLKAGADDYLVKPFHFIELLARIEALLRRQTM 122 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ DL ++ KT G I LT KEY ++EL + LT++ ++ Sbjct: 123 EKVDAEILKFDDLELDTSGKTATRAGKTIVLTAKEYALLELFMRNQGKILTRQYIAERVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + IDV++ LR K+ GK + T G GYVL++ Sbjct: 183 GIGFDTGTNFIDVYMSFLRNKIEKGFDGK-LLHTAIGMGYVLKK 225 >gi|228937554|ref|ZP_04100195.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970441|ref|ZP_04131095.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977011|ref|ZP_04137418.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782721|gb|EEM30892.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228789290|gb|EEM37215.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822128|gb|EEM68115.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938044|gb|AEA13940.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 233 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R +K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|126700886|ref|YP_001089783.1| two-component response regulator [Clostridium difficile 630] gi|255102435|ref|ZP_05331412.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255308339|ref|ZP_05352510.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|296451936|ref|ZP_06893652.1| response regulator [Clostridium difficile NAP08] gi|296879670|ref|ZP_06903646.1| response regulator [Clostridium difficile NAP07] gi|115252323|emb|CAJ70164.1| Two-component response regulator [Clostridium difficile] gi|296259250|gb|EFH06129.1| response regulator [Clostridium difficile NAP08] gi|296429339|gb|EFH15210.1| response regulator [Clostridium difficile NAP07] Length = 225 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 125/220 (56%), Gaps = 3/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +L+++DD + + ++ + FNVY ++ +D +++ + D IILD+ L DI G++ Sbjct: 3 NLLVVDDDVDILNINQIYFSNIGFNVYTSETAKDAMDIVESIVLDCIILDISLPDIDGYK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + ++ K++ P+ LS E+KVRG +G DDYI+KP++ +EL RI A +R+ + Sbjct: 63 MCNDIK-EKVNIPIIFLSNYEHEEEKVRGFLAGGDDYITKPYSLKELELRIYARMRQYKN 121 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ L +N++++ V G I LT E++++ L+ K +K N ++ Sbjct: 122 ITSVPNVLKFSALVINVNSRKVTFDGESIDLTTMEFEILLFLAENKEQVFSKIEIYNQVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D + + V I ++RKK+++ + YI+TVWG+GY Sbjct: 182 KMPDIGDQHTVQVHIAQMRKKINSLSREHQYIQTVWGKGY 221 >gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 250 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 129/239 (53%), Gaps = 11/239 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPG 59 +RILL++D+ L + L L E + V V G G I+ E D I+LD L D G Sbjct: 12 IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ + +R + ++TP+ +L+G I D+V+ L +G DDY+ KPF+ EEL+AR+RA+ RR+ Sbjct: 72 VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131 Query: 120 RGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +G S + G L++N + + V G +I L+ KEY+++ L L Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + + ++ + ++DV+I LR+K+ N + I TV G G++LR+ + T Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVEN-KDLPSLIHTVRGVGFILRDESTSTT 249 >gi|118466262|ref|YP_880424.1| TrcR family transcriptional regulator [Mycobacterium avium 104] gi|118167549|gb|ABK68446.1| two component transcriptional regulator trcr [Mycobacterium avium 104] Length = 254 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 131/230 (56%), Gaps = 13/230 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKF--YEFDAIILDLGLTDI 57 +R+LL++D+ AL + +++ L E +V D+ +G E + KF D ++LD+ L D+ Sbjct: 29 IRVLLVDDEPALTNLVKMALHYEG---WVVDIAHNGREAMAKFDRAAPDVLVLDIMLPDV 85 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L +R + TP L+ S+ D+V GL +GADDY++KPF+ EELVAR+R ++R Sbjct: 86 DGLRILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLR 145 Query: 118 RSRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R+ A++L V GDL V+ ++ V + L+ E++++ L L++ Sbjct: 146 RASQQPAPTAETLKV-GDLVVDTASREVTRGDTPVSLSSTEFELLRFLMRNPRRALSRTE 204 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ +++ I+D++I LRKK+ + G + I TV G GY+LR Sbjct: 205 ILDRVWNYDFAGRTSIVDLYISYLRKKIDS--GREPMIHTVRGVGYMLRP 252 >gi|312794869|ref|YP_004027791.1| transcriptional regulatory protein [Burkholderia rhizoxinica HKI 454] gi|312166644|emb|CBW73647.1| Transcriptional regulatory protein [Burkholderia rhizoxinica HKI 454] Length = 228 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 125/229 (54%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LLIEDD+ +A I+ L+ F V D+ DGI + + +ILDLGL I Sbjct: 1 MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L R A TPV +L+ + D+V+GL SGADDY+ KPF EL ARIRAI+R Sbjct: 58 DGMTLLARFRQANRHTPVIVLTARDELNDRVQGLNSGADDYMIKPFEPAELEARIRAIMR 117 Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RS H + + G L ++ + + + L+ +E+ ++E+L LR ++K Sbjct: 118 RSGSHGDMPRPEVSLGGLRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +HL + I+V++ ++RKKL + + I TV G GY+L+E Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLEHC---RVEIVTVRGFGYLLQE 223 >gi|301166631|emb|CBW26207.1| putative two-component system response regulator [Bacteriovorax marinus SJ] Length = 224 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 11/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD +L S++ L E V EL E IILD L D G + Sbjct: 3 KVLLVEDDDSLGSSLKSYLTGEGHEVVWAQSLSMARELKSDEEI--IILDWMLPDGQGVD 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 L+ LR A+I+ PV +L+ + + DKV GL++GA+DY++KPF EL+ARIR +R Sbjct: 61 FLKELREAEINKPVIMLTARTDLIDKVIGLEAGANDYMTKPFEPRELIARIRVQIRDHAK 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + ++ GDL +N + + + G I T E+ + LL+ N ++E LN Sbjct: 121 KDHDSSDGVLTRGDLVINQNEREIRWHGEVIEFTKMEFDFLTLLAESPNRAFSREEILNK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + P + +D + ++R+KLS+ IETV G GY R N Sbjct: 181 VWGYENYPSTRTVDTHVLQIRQKLSD-----ELIETVRGIGYRFRFN 222 >gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ +A +EL L+ E + V G DG+E FD IILD+ L + G E Sbjct: 5 KILIVEDEVKIARFVELELQHEGYIVDKAVDGRDGLEKALNENFDLIILDVMLPSLNGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR LR PV +L+ I DKV GL GADDYI+KPF EEL+ARIR + R Sbjct: 65 VLRRLR-QNSEVPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIRVTFKHKRV 123 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +I G L +N+ + LT E+ +++ L + KN L++E L ++ Sbjct: 124 TPDKSGIIEIGKLKLNVSKYLTTYDDEVVELTKTEFDLLKYLMVNKNIVLSRENILEKVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DV+I LR K+ + K +I TV G GY L++ Sbjct: 184 GYDYTGDTNVVDVYIRYLRSKIDDRFNHK-FIYTVRGVGYQLKD 226 >gi|170761752|ref|YP_001787320.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408741|gb|ACA57152.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 229 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I+ + + + V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 ICQKIR-DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I L+++++++ V + I T KE+ +IELL+L +KE + Sbjct: 122 VPLNNRSKISFEKLTLDINSRKVHYEEEEILFTAKEFDIIELLALHPEQVFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + + I K+R KL N+I TVWG GY +N Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKLIKRNASLNHIATVWGVGYRWEKN 227 >gi|146329260|ref|YP_001209793.1| two-component copper resistance response regulator [Dichelobacter nodosus VCS1703A] gi|146232730|gb|ABQ13708.1| two-component copper resistance response regulator [Dichelobacter nodosus VCS1703A] Length = 229 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD+ A I L + V G G+ + + ++D +I+D L ++ G Sbjct: 1 MHILVIEDDQDAAAYIAKGLTESGYVVDTAHTGSKGLMIAQKGQYDVLIVDRMLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR STPV ILS + ++D+V GL +G DDY+ KP+ EL+AR++++ RR Sbjct: 61 SLIQQLRAQGASTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQSLARRRN 120 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H Q ++ DL ++ + V G +I+L +E++++E L +T+ M L + Sbjct: 121 TDVHDQMVLEIADLHLDRLRRKVTRAGKKINLQPREFRLLEYLMSNSGQVVTRTMLLEKV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P+ +IDV I +LR K+ + I T G GY + Sbjct: 181 WEYNFDPQTNVIDVHISRLRSKI-DKDFNPPLIHTERGAGYSM 222 >gi|88858419|ref|ZP_01133061.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas tunicata D2] gi|88820036|gb|EAR29849.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas tunicata D2] Length = 227 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLI+DD AL + L ++ FN+ + + G+ G+ +F I+LD+ L GF Sbjct: 1 MQILLIDDDIALCELLNEYLGAQGFNLVIKNDGDAGLRAALADDFALILLDVMLPKRDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVL+ LR K+ TPV +L+ D++ GL+ GADDY++KPFN EL+AR++AI RR Sbjct: 61 EVLKLLRQQKL-TPVIMLTARGEDFDRIFGLELGADDYLAKPFNHRELLARVKAITRRIE 119 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + ++ D+ V ++ V GH + LTG EY+++ LL ++KE Sbjct: 120 HITAANKTQNLLWHDIEVKTQSREVYAAGHALLLTGTEYEILHLLLKNAGEIISKEQISE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R + ID+ + +RKK++ + I+T+ G GY+ Sbjct: 180 QVLGRRLAAFDRSIDMHVSNIRKKIAEHISDER-IKTIRGTGYIF 223 >gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 230 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I+ L+ E + + + GED + K FD ++LD+ L + GF V Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKITTSYDGEDALNKIKNENFDMVLLDVMLPKMDGFTV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ +++ + DKV GL+ GADDYI+KPF EL+ARIRA +RR+ Sbjct: 66 CKKVREFS-EVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTSQQ 124 Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S ++ G L++N + V+ G I LT +EY++++ L +K ++E L ++ Sbjct: 125 SNSDGKVLKAGKLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D +V+ +DV + +LR+K+ + +I T G GY N Sbjct: 185 DYEYYGDVRTVDVTVRRLREKIEDNPSEPVFILTKRGIGYYFNPNV 230 >gi|325845377|ref|ZP_08168676.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] gi|325488592|gb|EGC91002.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] Length = 230 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 130/233 (55%), Gaps = 13/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ ++ ++ L F V + GE+G++ ++D I+LD+ L GF Sbjct: 4 RILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKDGFA 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR IST + +LS D+V GL GADDY++KPF+ E+V++I+AI+RR Sbjct: 64 VCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKEV 123 Query: 121 -GHAQSLIVTGDLSVNLDAKTVE--VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G S+ LD E V G I T KEY+++E L K +++++ L+ Sbjct: 124 LSSEKNKNYLGYGSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLDR 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY---IETVWGRGYVLRENAKD 227 L+ + + +I+DV I K+R+KL K+Y I+T+ G GY+L + D Sbjct: 184 LWGFEYDGDTRIVDVHIFKIREKL------KDYGIKIKTIRGIGYMLEDEVHD 230 >gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 238 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 125/223 (56%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+K + ++ L + V GE+ +E + ++D I+LD+ L + G Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL GADDYI+KPFN E+ AR++AI+RR+ Sbjct: 73 VCQQIREFS-NVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q ++I GD+ ++ D++++ + I+LT KE+ ++E+L++ +++ L Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +DV + +LR+K+ N Y+ T WG GY Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGY 234 >gi|153939321|ref|YP_001389971.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935217|gb|ABS40715.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318056|gb|ADF98433.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 227 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L+IED+ ++ + L+++ + V L +D + F+ D ++LD+ L D GF Sbjct: 3 FKVLVIEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFRPDLVLLDINLPDESGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R + K P+ +L+ + I DKV GL+ GADDYI+KPFN +E++ R++ +RR Sbjct: 63 ELCRHIN-DKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVN 121 Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + + + VNL+ + V + L +EY+++E +N ++E+ L Sbjct: 122 KYKEKSDEEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ E EV+ +DV + +LR KL + + I+T +G GYV+R Sbjct: 182 NKVWGFDYEGEVRTVDVHVRRLRSKL-DKENATSIIDTAFGIGYVMR 227 >gi|330721725|gb|EGG99721.1| two component transcriptional regulator2C winged helix family [gamma proteobacterium IMCC2047] Length = 219 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD LA +++ L+ + V GE + + + D +ILDLGL DI G Sbjct: 1 MQILLVEDDYPLAKALQQALQEQQHTVNAVGTGEAALHIIDTEKPDIVILDLGLPDIDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R P+ +L+ + ++D++ GL SGADDY++KPF EL AR+R + RR Sbjct: 61 DVLKKARKKHSDLPILLLTARAELDDRITGLDSGADDYLAKPFEMAELFARLRVLERRLG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S IV ++ ++ + +V+ G + L+ KEY +++ L T+ LY Sbjct: 121 TAHSSEIVIHNVCLDCNNNSVKFNGTELELSRKEYMLLKSLMENAGRIQTRSTLERRLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E ++V + LRKKL G N+I+TV G GY Sbjct: 181 WDEEVASNALEVHVHHLRKKL-----GSNFIKTVRGVGY 214 >gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1] gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1] Length = 226 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+++D+K +A +EL LK++ F VY G + ++ + D ILD+ L DI G Sbjct: 1 MKVLVVDDEKEIADLVELYLKNDGFEVYKFYTGNEALQCVDVQDIDLAILDIMLPDISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R + P+ +L+ + DK+ GL GADDY++KPF EL+AR++A +RR + Sbjct: 61 EICQTIR-ENYNFPIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQLRRYK 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++++ G L+++ D + + LT E+ ++ LL K +T + Sbjct: 120 TMTPKEEKNMVTIGALTIDQDNHQCILNNQTLSLTPTEFSILWLLCKHKGKVVTVDQIFQ 179 Query: 177 HLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ + I V I LR+K+ ++A YI+TVWG GY Sbjct: 180 ELWGEKYYTNSSSSIMVHIRHLREKMDDSAENPKYIQTVWGVGY 223 >gi|302549204|ref|ZP_07301546.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302466822|gb|EFL29915.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 247 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ L + L+SE + V + G +E + DA++LD L D G Sbjct: 21 VRVLVVDDEPDLTDVLGAALRSEGWEVRIACDGAGALEAADGFHPDAVVLDWMLPDTDGL 80 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL ALR V L+ ++ED++ G+ +G DDY++KPF EE++AR+R +VRR Sbjct: 81 GVLHALRRRIPQVCVLFLTARDAVEDRIAGITAGGDDYVTKPFALEEVLARLRGLVRRAG 140 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 SR +V DL ++ +A+ V G + L+ E++++ L L+KE L+ Sbjct: 141 MSREADAPRLVVADLVMDEEAREVTRSGRIVELSRTEFELLRFLMRNPRRVLSKEQILDR 200 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +++++I LRKK+ AG I TV G GYVL+++ Sbjct: 201 VWSYDFGGRAHVVELYISYLRKKID--AGQAPLIHTVRGVGYVLKQD 245 >gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB [Hyphomonas neptunium ATCC 15444] gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB [Hyphomonas neptunium ATCC 15444] Length = 228 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ ED+ A++ + LK E+++V + GE+ + + D ++LD L + G E+ Sbjct: 5 VLVAEDESAVSELLLYNLKREDYDVAIAADGEEALMMIDERIPDLLLLDWMLPKVSGIEI 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R +R ++ P+ +L+ D++RGL +GADDY++KPF+ EL+AR+RA++RR R Sbjct: 65 CRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVLRRIR 124 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + I GD+ ++ A V IHL E+++++ ++E L+ ++ Sbjct: 125 PGLKEDRITVGDIEIDRVAHRVSRNNEDIHLGPTEFRLLDYFMQHPGRVFSREQLLDTVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +DV + +LRK L +GG++ I TV GY LR + Sbjct: 185 GSDVYVEARTVDVHVGRLRKALRQ-SGGEDPIRTVRSAGYALRAD 228 >gi|15894147|ref|NP_347496.1| two-component response regulator [Clostridium acetobutylicum ATCC 824] gi|15023754|gb|AAK78836.1|AE007601_7 Two-component response regulator [Clostridium acetobutylicum ATCC 824] gi|325508275|gb|ADZ19911.1| Two-component response regulator [Clostridium acetobutylicum EA 2018] Length = 231 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 129/227 (56%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + I+++EDD + + +++ML+ + +NV G + + K EF ++LDL L I G Sbjct: 5 INIIVVEDDNDINNMLKIMLERKGYNVVQAYSGTEALLHVKTQEFQLMLLDLMLPGISGD 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+L+ +R + PV ++S S + KVR L+ GADDYI+KPF+ +++ ARI + +RR Sbjct: 65 ELLQKVRGIS-AMPVIVISAKLSKDTKVRMLKIGADDYITKPFDMDDVDARIYSNLRRYI 123 Query: 119 SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G +S IV D+ ++ A V V G R+ LT +E++++E+L L K +K Sbjct: 124 KFGKDESFNSKIVFKDMILDSVAMEVIVNGQRMSLTNREFKILEVLLLNKRKVFSKANLF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + ++V I LR KL A + YIETVWG GY L+ Sbjct: 184 ESVWEDTYMGDDNTLNVHISNLRNKLLKANSKEEYIETVWGMGYRLK 230 >gi|293607417|ref|ZP_06689756.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|292814261|gb|EFF73403.1| two component response regulator [Achromobacter piechaudii ATCC 43553] Length = 223 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD + ++ L+ + V +G +DA++LDLGL G Sbjct: 1 MRILIIEDDPLIGDGLKSGLRLLGYAVDWFTSSREGDHAMGVVHYDAVVLDLGLPLEDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R A S PV IL+ +++ ++ GL +GADDY+ KP +EL AR+RA+ RR Sbjct: 61 TLLARWRNAGRSVPVVILTAREAVDSRIAGLDAGADDYLIKPIALDELAARLRAVTRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + GDL + V +G ++ LT +E ++EL + LT++ + LYD Sbjct: 121 GKPEPVWRHGDLDYHPALHEVHWKGQKVDLTTREALLLELFLTHPHRVLTRDFIRDKLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E ++VF+ LRKK+ + TV G GY L Sbjct: 181 WDAELESNALEVFVHHLRKKIH-----PKIVRTVRGSGYAL 216 >gi|284046586|ref|YP_003396926.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950807|gb|ADB53551.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 224 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 8/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L +EDD + + L+L++ F V VT G+ G++ + F +LD+ L I G Sbjct: 7 RVLFVEDDPTIRETTALVLETFGFEVRVTADGQAGLDAFRAEPFHVALLDVMLPRIDGIS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++R +R PV +LS S D V GL++GADDY++KPF+ L AR+RA++RR+ Sbjct: 67 LVRMIRETS-PIPVVLLSARSEPLDVVAGLEAGADDYVAKPFDGPVLAARLRAVLRRAER 125 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + ++ GDL ++ + + G + LT E +++ L+ L++ + L ++ Sbjct: 126 QADERRVVTIGDLELDAAGMSARIAGRPVSLTTTEARLLIELAQNAGVVLSRAVLLERVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +++DV I +LR K+ G+ IETV G GY L Sbjct: 186 EHAWDGDTRLVDVHIQRLRAKI-----GRERIETVRGAGYKL 222 >gi|227885266|ref|ZP_04003071.1| response regulator [Escherichia coli 83972] gi|227837792|gb|EEJ48258.1| response regulator [Escherichia coli 83972] gi|307556495|gb|ADN49270.1| putative response regulator [Escherichia coli ABU 83972] Length = 239 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 6 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 66 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125 Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++++ G L +N ++ V + ++ LT +E+ ++ + + ++ L Sbjct: 126 MGQNILLAGRLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPSEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + E ++ I +LR K+ A I+TVWG+GY Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 229 >gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Carnobacterium sp. AT7] gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Carnobacterium sp. AT7] Length = 242 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 133/240 (55%), Gaps = 15/240 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ + L+ E ++V G +G E+ + +D IILDL L + G + Sbjct: 3 KVLIVDDEQSILTLLAFNLEKEGYHVDTALDGLEGYEMALAHAYDFIILDLMLPSMGGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 + + LR KI P+ +L+ +K+ GL+ GADDY++KPF+ E++AR++AI+RR S Sbjct: 63 ICKKLRQEKIDAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMSS 122 Query: 120 RGHAQ-------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166 + +A+ L+ GD+ ++ V V+ ++ +T KE++++ + R N Sbjct: 123 KSNAEEALKTKDTIKEEAELVQVGDIRIDPSQYEVIVRDEKVDVTPKEFELLMYMIKRIN 182 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L++E L+ +++ E +I+DV I LR+K+ YI TV G GY + K Sbjct: 183 RILSREQLLDAIWNFDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGYKFEDPKK 242 >gi|134293532|ref|YP_001117268.1| two component heavy metal response transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136689|gb|ABO57803.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 231 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ + ++ L E + V GEDG +++D ++LD+ L + GF Sbjct: 1 MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRALR K TPV +L+ ++D+VRGL+ GADDY++KPF+ EL+ R+RA+ RR+R Sbjct: 61 GVLRALRGQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +LI GDL V+L + G R+ LT +E+Q++ +L+ R L+K ++D Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGDVLSKTTIAELVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++ I +LR KL K + T+ G GYVL Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFTDK-LLHTIRGMGYVL 219 >gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624] gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624] Length = 244 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 14/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 +IL+++DD + + L E F V+ L EDG L + D I+LDL + Sbjct: 11 KILVVDDDARIRDLLRRYLTQEGFEVF---LAEDGKALTRILLRESVDLIVLDLMMPGED 67 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 68 GLSICRRLRAANDRTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRR 127 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + Q ++ G +L A+T+ G + LT E+ M++ L ++ Sbjct: 128 RPAPEAPGAPSSEQEVVAFGPYVFDLSARTLRKDGEELPLTTGEFAMLKALVRHPRQPMS 187 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E EP + +DV + +LRK + YI+TVWG GYV Sbjct: 188 REKLAQQARGREFEPFDRSLDVQVSRLRKLIELDPASPRYIQTVWGVGYVF 238 >gi|317406334|gb|EFV86566.1| hypothetical protein HMPREF0005_05179 [Achromobacter xylosoxidans C54] Length = 222 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 121/220 (55%), Gaps = 7/220 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M++LL+EDD L ++ + V +V D+ + L + + + A++LDLGL G Sbjct: 1 MQVLLVEDDAMLGDALRSSMVGAGLRVDWVRDVPAARLALVE-HGYGAVLLDLGLPGGSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ LR +TPV I++ + ++V+GL +GADDYI KPF +EL+AR+RA+VRRS Sbjct: 60 LAVLKHLRARYDATPVLIITARDRLSERVQGLDAGADDYIVKPFQLDELLARLRAVVRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S++ D+ ++ + V G + L+ EY+ + L R T+++E +Y Sbjct: 120 SNSVVSVLRCRDVQLDPARRVVTRAGAEVVLSASEYRTLLALMERAGQTVSREQLEAAVY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G E + V++ +LR+KL G + + TV G GY Sbjct: 180 GGSGTIESNTVAVYVHQLRRKL-----GDDLVATVHGLGY 214 >gi|315606091|ref|ZP_07881122.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312373|gb|EFU60459.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 225 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 3/218 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD A++ + L E ++V G G L D ++LDLGL DI G +V Sbjct: 4 VLLVEDDPAISEPLARALGREGYDVRAHATG--GQALADARGVDLVVLDLGLPDIDGLDV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 62 ARELRASGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQTSE 121 Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ + D+ +++ A + LT KE+ ++ +L + + +E + ++ Sbjct: 122 PAEGELRAQDIRMDVAAHRAFAGDTELSLTAKEFDLLRVLLREAGSVVARETLMREVWGS 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +D+ + LR+KL + A +YI TV G G+ Sbjct: 182 DPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGF 219 >gi|308176012|ref|YP_003915418.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743475|emb|CBT74447.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 222 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ ++ + L++ + + G+DG L + + IILDLGL D GF Sbjct: 3 QILIIEDEPRISSFVAKGLRAAGLTSSIAETGQDGFNLAIEGDHELIILDLGLPDEDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LRVA+I TPV IL+ S+ED V GLQ+GADDY++KPF+ +EL+AR+R +R Sbjct: 63 VLRRLRVAQIDTPVIILTARGSVEDTVAGLQNGADDYMAKPFHFDELLARVRLRLRTEDN 122 Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S + +L ++L + V V + L+ +E+ + E L++E L+ ++ Sbjct: 123 APEVSSLTHENLHMDLLRRRVTVNEREVDLSAREFALAEAFLRNPGQVLSREQLLSRVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ LR KL G ETV G GY L Sbjct: 183 YDFDPGSNVVDVYVRYLRNKL-----GSERFETVRGFGYRL 218 >gi|255065068|ref|ZP_05316923.1| QseB protein [Neisseria sicca ATCC 29256] gi|255050489|gb|EET45953.1| QseB protein [Neisseria sicca ATCC 29256] Length = 223 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 13/226 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG- 59 MR+LL EDD +A +I LK Y D ++G ++ + L L +PG Sbjct: 1 MRVLLAEDDNMIAQAIAANLKDSG---YAVDWVKNGSQVSTALQAQNYDLLLLDLGLPGK 57 Query: 60 --FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 +VL +R TPV I++ + ++ GL GADDYI KPF+ EL AR+RA++R Sbjct: 58 DGLDVLTQIRHEGSQTPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R GH+Q+L+ G L++N VEV+G + L+ KE+ +++ L +R L++ Sbjct: 118 RHSGHSQTLLTNGALTLNPATYQVEVKGENKPVLLSNKEFAVLQALMMRPGIILSRSDLE 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +Y +E E +D I LRKKL GK +I+ V G G+++ Sbjct: 178 DKIYGWGEEVESNAVDFLIHALRKKL-----GKEHIQNVRGVGWLV 218 >gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876] gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876] Length = 237 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +DDK + + +++ L+ E + V GE+ + L +++ +ILDL + I G Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + LR K + P+ +L+ DK+ GL GADDYI+KPF+ E++AR++A++RR Sbjct: 64 EVCKKLR-DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ + L++NL+ TV I LTGKE ++++ + TK Sbjct: 123 VLGSNNTVQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+T+WG GY Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228 >gi|255036915|ref|YP_003087536.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254949671|gb|ACT94371.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 225 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 129/221 (58%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+K LA SI L E F V + E Y++D I+DL L D GF Sbjct: 1 MKILVVEDEKGLAESITDYLSREGFVCEVANTFWQADEKISLYQYDCTIVDLTLPDGNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ L+ +T + I+S +++EDK++GL+ G+DDY++KPF+ EL AR+++++RR Sbjct: 61 DIIQTLKKIAAATGIIIISARNTLEDKLKGLEIGSDDYMTKPFHLSELNARVKSLIRRRN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 + + D+ VNL A+ V ++ L+ KEY ++ + LTKE HL+ Sbjct: 121 FGGNNDMTWKDIRVNLPARKVFIKDIETTLSKKEYDLLLYFLSNIDVALTKESIAEHLWG 180 Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D D + + ++ I LR+K+ GGK+YI++++G GY Sbjct: 181 DNMDSADSLDMVYSHIKNLRRKIV-EKGGKDYIQSIYGIGY 220 >gi|300690116|ref|YP_003751111.1| transcriptional regulatory protein [Ralstonia solanacearum PSI07] gi|299077176|emb|CBJ49802.1| Transcriptional regulatory protein [Ralstonia solanacearum PSI07] Length = 243 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 125/237 (52%), Gaps = 18/237 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLIEDD LA I L + F V V G+ + + ++ +ILDL L + G E Sbjct: 9 KVLLIEDDDRLAQLISEYLGNYEFTVAVVRRGDTAVAAVREHQPALVILDLMLPHLDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A PV IL+ D+V GL+ GADDY+ KP LVAR+RA++RR+ Sbjct: 69 VCRRIR-AFSRVPVLILTARVDPYDQVAGLEIGADDYVLKPIEPRLLVARVRALLRRAAP 127 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + +V G+L ++ +TV +G + L E+ ++ +L+ T L+++ Sbjct: 128 AMSTSEPAVPHDDTLVFGELVISPPNRTVTWRGQPVELKTAEFNLLLILARAAGTVLSRD 187 Query: 173 MFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L L +DG D + +D I +LR++ +A+ + I+T+WGRGY+ +A Sbjct: 188 DILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSA 240 >gi|118591736|ref|ZP_01549132.1| two-component system, regulatory protein [Stappia aggregata IAM 12614] gi|118435729|gb|EAV42374.1| two-component system, regulatory protein [Stappia aggregata IAM 12614] Length = 212 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 4/178 (2%) Query: 45 FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104 +D I+LD+ L D G E+L+ +R TPV +L+ S++D+V L SGADDY+ KPF+ Sbjct: 34 YDVIVLDINLPDGLGTELLKEIRARGERTPVLMLTAEFSVDDRVSSLNSGADDYLVKPFD 93 Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164 EL ARIRA+ RR +G + G L+ N A+ V G I LT +E+ ++E+L Sbjct: 94 HRELEARIRALYRREQGDKAEELTLGSLTFNASARVVRQDGSPITLTRREFSLLEILVRN 153 Query: 165 KNTTLTKEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + T++KE ++ +D + + +++++ +LRKKLS GG IET G GY L Sbjct: 154 RGKTVSKERLFEGVFSFQDTDVSMNALELYVARLRKKLS---GGSVRIETQRGLGYKL 208 >gi|332533733|ref|ZP_08409591.1| two component transcriptional regulator, winged helix family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332036788|gb|EGI73250.1| two component transcriptional regulator, winged helix family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 224 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED +AL S+++ L + F V T G +G+ + +D ++LDL L + G Sbjct: 1 MKILVIEDSEALRRSLQVGLSNLGFTVDETGDGSEGLSMALSGNYDLLVLDLMLPSVDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +L+ALR + + V ILS S +DK+ GL GADDY++KPF+ EEL AR+ A++RR S Sbjct: 61 SILQALRSSNSQSRVLILSARSEPQDKISGLMKGADDYLTKPFSFEELHARVLALLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + Q+ + GD ++L KT+ + H I LT EY++IE L L E+ + Sbjct: 121 LQNQQNTLTVGDCVLDLSLKTLHYKQHAIELTPNEYKIIECLFNAPERVLGLELISEAVV 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 D ++ I +RKK+ G+ I+ G GYV Sbjct: 181 GQFDMLSKNALEAHISTIRKKVRQ-FDGELPIKNKRGFGYV 220 >gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 238 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + +++ L+ EN+ V + GE + L ++D I+LD+ + + G E Sbjct: 6 KILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLALEIDYDLILLDIMMPGMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR K +TPV +L+ ++V+G + G DDYI KPF+ E+V R++A++RRS Sbjct: 66 VCQELRKTK-ATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSST 124 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++V L+++ DA V V G I LT KEY+++ L+ + ++E Sbjct: 125 TKFLQTDTQTKDVLVFPHLTIDNDAHRVSVNGDEISLTPKEYELLHYLAQSPDKVFSREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219 L +++ +++ +D I +LR+KL+ + I TVWG GY Sbjct: 185 LLKDVWNYDFFGDLRTVDTHIKRLREKLNRISPEAAAMISTVWGVGY 231 >gi|262376401|ref|ZP_06069630.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262308540|gb|EEY89674.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 223 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 12/226 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A S E +LK F+V+ + G +G++ + +D ++LDLGL + G Sbjct: 3 KILIIEDDFMIAESTETLLKLHQFDVHWVNNGIEGLKQLQQQVYDIVLLDLGLPMMDGIL 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV I+S ++++V GL GADDY+ KP+ +EL+ARI A++RRS G Sbjct: 63 VLKNIRQKFPNLPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALIRRS-G 121 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I T G L ++L+ G I L+ +E+ ++ + N +K Sbjct: 122 LKNTGIDTNKKLSHGSLELDLEQHIALFNGQAIELSNREWSILMAMLNHPNKIFSKNDLE 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + LYD + ++V+I LR KL GK++I T+ G GY L Sbjct: 182 DKLYDFDSDVSSNTVEVYIHHLRAKL-----GKDFIRTIRGLGYRL 222 >gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 223 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|312888723|ref|ZP_07748290.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311298826|gb|EFQ75928.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 225 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED++ L +I L E I+ Y +D I+LD+GL D GF Sbjct: 1 MKLLVIEDEQKLLENIVTYLNGEGDICESCSTLTAAIDKLSVYNYDCILLDIGLPDGEGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR A + V I+S +SI+DK++GL GADDY++KPF+ EL AR+ AI RR Sbjct: 61 AVLDFLRTAMRNEAVLIISARNSIDDKIKGLNIGADDYLTKPFHLAELKARLAAIYRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 ++ +L+V +++++L ++V V + LT KEY M+ K ++K HL+ Sbjct: 121 SNSSNLLVFNEITIDLLGRSVYVNDTTLILTRKEYDMLLYFIANKGKVVSKNALAEHLWG 180 Query: 180 DGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D D I I LRKK+ + +Y+++V+G GY Sbjct: 181 DEMDMHDNFDFIYTHIKNLRKKMLD-LNAHDYLKSVYGIGY 220 >gi|284038331|ref|YP_003388261.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283817624|gb|ADB39462.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 223 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED++ LA I+ L+ +T G +G++ +D ++LDL L GF Sbjct: 1 MKILVIEDERKLARFIKQGLEQHGHVADLTYSGSEGLDHIAGGLYDLVLLDLMLPGQTGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR ++ PV ILS +S E V+GL GA DY+ KPF+ EL+ARIR + RR+ Sbjct: 61 EVLQNLRAFGLTVPVMILSALSDPERVVQGLDLGAVDYLRKPFDFNELLARIRVLQRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ DL + L + V + LT +E+ ++ELL R +TK ++ Sbjct: 121 MGNDVVLRVADLEMRLVSHEVHKNNVHLELTNREFALLELLMRRAGQLVTKNEIAEKVWA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +I+V I +LRKK+ +A G IET+ GRGY L+ Sbjct: 181 MDFDMGSNVIEVHIYQLRKKI-DATGIPGLIETLIGRGYRLK 221 >gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 242 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A + + L+ E + + G G+ + +DA++LDL L + G E Sbjct: 6 RVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHAGLRELERGNWDALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR+ Sbjct: 66 ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRRTDA 125 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ + G+L + A+ V V G I LT +E+ ++ + ++ L Sbjct: 126 LARNARMESGSLTLGNLDIEPLAREVRVDGKLIELTPREFDLLYFFARNPGKVFSRLDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N ++ + + ++ I +LR K+ I TVWGRGY L Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRTKVETDPAEPRRILTVWGRGYKL 231 >gi|187919636|ref|YP_001888667.1| two component heavy metal response winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718074|gb|ACD19297.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 223 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ L+ + V + G DG+ + +D ++LD+ L I G+ Sbjct: 1 MTILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++RALR + PV L+ + D++RGL+ GADDY+ KPF+ ELV RIR ++RR Sbjct: 61 EIMRALRTRR-DLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DL +++ + V +G I LT KE+ ++ LL R+ L++ + ++D Sbjct: 120 IRESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++DV I +LR K+ + K I TV GY Sbjct: 180 MNFDSDTNVVDVAIKRLRAKVDHPF-EKKLIHTVRSIGYTF 219 >gi|229917477|ref|YP_002886123.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229468906|gb|ACQ70678.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 236 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 132/233 (56%), Gaps = 9/233 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ +A ++ L+ E + V+V GE+ + + + D I+LD+ L G EV Sbjct: 5 ILVVDDEQPIADILKFKLEKEGYQVHVAYDGEEALVKVEEIQPDLILLDIMLPLKDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 CREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSSRELLARVKANMRRHATA 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++G + IV GDL+++ D+ V + +I LT +E+++I L+ +T+E Sbjct: 124 PAPEAKGANANDIVIGDLTIHPDSYMVTKRDEKIELTHREFELIHYLAQNIGQVMTREHL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + YI T G GY L+ +D Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSTPTYIITRRGVGYYLKAGEED 236 >gi|325525528|gb|EGD03325.1| signal transduction response regulator [Burkholderia sp. TJI49] Length = 196 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 3/193 (1%) Query: 33 GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92 GE + K +DA++LD+ L I G EVL LR + PV +L+ S++DKV Sbjct: 4 GERADTVLKTERYDAVLLDMRLPGISGKEVLARLRRRNDNVPVLMLTAHGSVDDKVDCFG 63 Query: 93 SGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTG 152 +GADDY+ KPF ELVARIRA++RR G + + GDL + + L Sbjct: 64 AGADDYVVKPFESRELVARIRALIRRQAGVGATQLACGDLVYAFGTREFRCGDAPLALRR 123 Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212 +E+ ++E L L++N T++K ++ ++ DEP ID++I +LRK L A I Sbjct: 124 REHAILETLMLQQNKTVSKARLMDSVFALDDEPSADAIDIYIHRLRKHL---AASTAEII 180 Query: 213 TVWGRGYVLRENA 225 T+ G GY+LR + Sbjct: 181 TLRGLGYILRAKS 193 >gi|325275439|ref|ZP_08141370.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099415|gb|EGB97330.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ A ++ L+ + V G DG+ L + + +D +ILD+ L ++ G+ Sbjct: 1 MRLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQHPYDLVILDVNLPELDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR A+ +T + +L+ + D+V+GL GADDY+ KPF EL+ARIR+++RR+ Sbjct: 61 TVLQRLR-AESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q S + DL ++ G RI LT KE+ ++ LL + L++ ++ ++ Sbjct: 120 QQLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFDTK-LIHTLRGVGYVL 220 >gi|311106334|ref|YP_003979187.1| transcriptional regulator QseB 2 [Achromobacter xylosoxidans A8] gi|310761023|gb|ADP16472.1| transcriptional regulatory protein QseB 2 [Achromobacter xylosoxidans A8] Length = 222 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ + I L++ V + F+A++LDLGL D G Sbjct: 1 MRVLLVEDDELIGKGIVAGLRAHGIMVQHVCTAVEAEAAQTGNSFNALVLDLGLPDRDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R + PV ILS +IE ++ GL GADDY++KPF+ EL AR+ A+VRR++ Sbjct: 61 ELLSVVRAIEPCLPVLILSARDAIEHRIAGLHQGADDYMTKPFDLRELAARLHALVRRTQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I G L + ++ ++G I L+ +E ++ L+ + ++ LY Sbjct: 121 GRAAQIIAAGPLRLEPESGLAWLEGQAISLSRREVDLLAHLATADARWIAPDLLSERLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V I LR+KL G IET G GY L Sbjct: 181 LGEEVSSNALNVHIHNLRRKL-----GAEVIETSRGLGYRL 216 >gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp. subtilis str. 168] gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp. subtilis str. SMY] gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5] gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto BEST195] gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus subtilis subsp. spizizenii str. W23] gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5] Length = 236 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E L+ E + V+ G + +E+ + + D I+LD+ L + G E Sbjct: 5 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVR-KKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 124 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR +D Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 236 >gi|170759704|ref|YP_001785583.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] gi|169406693|gb|ACA55104.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 132/227 (58%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60 +IL+IEDD+ + ++L L+ +++ + + G + +L K + D +ILDL L DI G Sbjct: 3 KILIIEDDEDIRDILKLYLEGQSYEILEAENGAEATKQLVK--QPDLVILDLMLPDIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + +++R K P+ +++ ++ +DK+ GL GADDYI+KPFN E+VAR++A +RR + Sbjct: 61 SICKSIR-KKYYYPIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYK 119 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++ I L++N +K V + I LT E++++E+L +K L+ E Sbjct: 120 QYDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEVLLKKKGEVLSGEELF 179 Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N ++ D I V + LR+K+ ++ YI+TVWG GY++ Sbjct: 180 NLIWEDEYYSKSTNTITVHVRNLREKMGDSFEKPEYIKTVWGVGYII 226 >gi|330957821|gb|EGH58081.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 223 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G E+ ILD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALSSEEYAVAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+ +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQCCGVLTYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+++I +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GHAVAIVTFRGLGYLL 218 >gi|299769446|ref|YP_003731472.1| putative two component heavy metal response transcriptional regulator [Acinetobacter sp. DR1] gi|298699534|gb|ADI90099.1| putative two component heavy metal response transcriptional regulator [Acinetobacter sp. DR1] Length = 223 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGMQGLEMLKRDQYDLLILDVMLPDIDGW 60 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ LR +KI PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR Sbjct: 61 SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL ++L A V G+ I L+ E+ ++ L L K +T+ + ++ Sbjct: 119 QYLQENELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + IDV + +LR K+ K I T+ G GY Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEGYDLK-LIHTIRGLGY 217 >gi|26988153|ref|NP_743578.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24982886|gb|AAN67042.1|AE016333_3 transcriptional regulatory protein TctD [Pseudomonas putida KT2440] gi|313500352|gb|ADR61718.1| TctD [Pseudomonas putida BIRD-1] Length = 223 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ L LKS V V G E+ +LD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVALALKSHGLTVDVLHDGVAADLALASEEYAVAVLDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRGRGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGPLVYDLDTRRFTLGDDNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+++I +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GHPVAIVTFRGLGYLL 218 >gi|26988171|ref|NP_743596.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440] gi|148549489|ref|YP_001269591.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|24982905|gb|AAN67060.1|AE016334_9 DNA-binding response regulator CzrR [Pseudomonas putida KT2440] gi|148513547|gb|ABQ80407.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 224 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ A ++ L+ + V G DG+ L + +D +ILD+ L +I G+ Sbjct: 1 MRLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQAYDLVILDVNLPEIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR A+ +T + +L+ + D+V+GL GADDY+ KPF EL+ARIR+++RR+ Sbjct: 61 TVLQRLR-AESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q S + DL ++ G RI LT KE+ ++ LL + L++ ++ ++ Sbjct: 120 QQLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFDNK-LIHTLRGVGYVL 220 >gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545] Length = 234 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNSREALEQFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS+ Sbjct: 63 VAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 121 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 122 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ +V+ +DV + +LR+K+ + YI T G GY +R NA Sbjct: 182 HLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 234 >gi|332716740|ref|YP_004444206.1| two component response regulator [Agrobacterium sp. H13-3] gi|325063425|gb|ADY67115.1| two component response regulator [Agrobacterium sp. H13-3] Length = 217 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L ++ + + V L +D + I+LD+ L D G Sbjct: 1 MRVLLVEDDHVLGEALRDHVAAAGHAVDWFKLLDDATAATLTMAYGLILLDMRLPDGDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L++LR STPV IL+ + D++ GL +GADDY+ KPF+ EL AR+ A+ RR Sbjct: 61 TLLQSLRNRDDSTPVIILTAHDQVSDRIAGLNAGADDYLVKPFDLNELSARMLAVSRRYE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I + +N A+ + V G L+ +E+ ++E L ++K + LY+ Sbjct: 121 GRSAPVIRLPGIEINQVARNIVVDGTAQTLSAREWAVLEKLVEHPGAVVSKSQLHDTLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E E ++V+I +LRKK+ G + +ETV G GY +R Sbjct: 181 FGAEIESNTVEVYISRLRKKI-----GHDRVETVRGVGYTIR 217 >gi|320527273|ref|ZP_08028458.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320132297|gb|EFW24842.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 221 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 124/219 (56%), Gaps = 4/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD A+ HS++ L E F+ ++ +L K ++ ++LD+ L D GF Sbjct: 3 KILLVEDDFAIVHSLQEYLNLEGFSSDYASGQKEAEQLLKTKQYQLLLLDVSLKDGDGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V KI PV LS S E VRGL GADDYI+KPF +EL++RI+ ++RR G Sbjct: 63 VCNM--AQKIQLPVIFLSASSDEETVVRGLNIGADDYITKPFRPKELLSRIKNVLRRHTG 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180 H Q++I+ ++ V+++ V+ + I+L+ EY+++ L + LT++ L+ +++ Sbjct: 121 H-QTIILLDEIQVDIEKAIVKKKEKEINLSALEYKLLTLFIDHRGKLLTRDQLLDEIWNI 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D I V+I +LR+K+ + I+TV G GY Sbjct: 180 AGDFVNDNTITVYIKRLREKIEDDPTNPKIIKTVRGLGY 218 >gi|298491318|ref|YP_003721495.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233236|gb|ADI64372.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 236 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+ L + +L E + V G +G +L + +D +ILD L G Sbjct: 7 MRILLVDDEAELTDPLSRVLIREGYIVDAAYHGINGSQLAQIGTYDLLILDWMLPGKTGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR +TPV L+ +++D+V+GL +GADDY+ KPF EL+AR+RA++RR Sbjct: 67 EICQELRRQAKTTPVLFLTAKDTLDDRVQGLDAGADDYLIKPFELRELLARVRALLRRCS 126 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +V DL ++++ + QG I L+ KE Q+++ L+ + Sbjct: 127 IEFYNTTTAHLVVADLELDVENQIAYRQGRIIELSQKESQLLQYFMEYTGQLLSHSQIMQ 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 HL+ +P +I I LR+K+ A I TV+G+GY Sbjct: 187 HLWPNGQQPGSNVIAALIRLLRRKI-EAGNESALIRTVYGKGY 228 >gi|296159560|ref|ZP_06842384.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295890268|gb|EFG70062.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 245 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 12/228 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59 IL+++DD + + L+ F V D E G+ L + + + I+LD+ + ++ G Sbjct: 5 ILVVDDDPVVRELVSGYLQGRGFKV---DTLEHGMALQRQLQDERPALIVLDIMMPELDG 61 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 LRALRVA PV +L+ + D+V GL+ GADDY+ KPF ELVARIR ++RR Sbjct: 62 ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S ++ G VN A+ + G RI L E+ M+++ T LT+ Sbjct: 122 GSIAPSAPEQRAPYRFGRFEVNFPARELRRDGERIALRSSEFAMLKIFVSHAMTVLTRAQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L L+ + + +DV I +LR+ + Y++TVWGRGYV Sbjct: 182 LLEKLHGNSELHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229 >gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 232 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 130/224 (58%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L L E + V V + GE+G+E + D ++LD+ + + G E Sbjct: 5 KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A +TPV +L+ DKV GL+ GADDY+ KPF+ +E+VARI+A++RR + Sbjct: 65 VCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + T +L +++++ + V+G + KE +++ L+ N T++ L Sbjct: 124 TSAAAESTEGVSEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + + IDV + +LR+KL+ A+ K ++TVWG GY Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKLAGAS-DKWELKTVWGVGY 226 >gi|291294702|ref|YP_003506100.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469661|gb|ADD27080.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 221 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL++DD A+ + + L+ E V G + ++L + D +ILDL L + G++ Sbjct: 3 RVLLVDDDPAIREVLGVYLRQEGCEVLEATNGLEALQLLP--QADVVILDLMLPQLTGWQ 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ ++++GL+ GADDY++KPF+ E+VAR+RA++RRS G Sbjct: 61 VAQELRRDYPDLPLLMLTARGEEAERIQGLELGADDYVTKPFSPREVVARVRALLRRS-G 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q L V GDL + + +G ++L+ E+ ++ L+ ++E L ++ G Sbjct: 120 FKQEL-VFGDLILRPRQREALFKGQALNLSKLEFDLLLTLAQHPGLVWSRERLLERVW-G 177 Query: 182 RDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D P V +++DV + LRKKL A YIETV G GY R Sbjct: 178 SDFPGVDRVVDVHVAGLRKKLGEDAENPLYIETVRGVGYRFR 219 >gi|119962132|ref|YP_946602.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119948991|gb|ABM07902.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 246 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L+++D+ +LA + + L+ ++V V G ++L K + D ++LD+ L G Sbjct: 22 IRALVVDDEPSLAELMSMGLRMAGWSVAVAGDGPGAVKLAKDFRPDVLVLDVMLPGFDGV 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R P L+ +++D++ GL +G DDY++KPF+ EE++ R+ +V+RS Sbjct: 82 EVLNRIRTFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A +V GDL++N+D + V G I LT +++++ L ++K L+ + Sbjct: 142 VAAMDTAELVVGDLTLNVDTREVTRGGEDISLTATQFELLRYLMENPKRVVSKAQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + I++++I LRKK+ A I T+ G GYV++ Sbjct: 202 WDYDFGGQANIVELYISYLRKKIE--ANHPPMIHTIRGAGYVIKP 244 >gi|269125708|ref|YP_003299078.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310666|gb|ACY97040.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 225 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 9/223 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ A+A ++ L++E F + G D +E + D ++LDL L + G E Sbjct: 5 RILVVEDEPAIAEAVAERLRAEGFTAVIARDGLDAVERFRRSAPDLVVLDLMLPGLDGLE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 V R L+ A+ PV +L+ D++ GL GADDY++KPF+ LVAR+RA++R R Sbjct: 65 VCRRLQ-AERPVPVLMLTARGEETDQLIGLGVGADDYLTKPFSMRVLVARVRALLRRIER 123 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +R ++ G L V+ A+ V ++G ++HLT E++++ L+ T ++ L + Sbjct: 124 ARSGTHPVVRLGGLEVDRAARRVRLRGAQVHLTPTEFELLAFLAGAPGTVFSRAELLERV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +D + LR+KL G I T G GY L Sbjct: 184 WGWTAGAGTRTVDSHVRALRRKL-----GDEIIRTAHGVGYAL 221 >gi|254976866|ref|ZP_05273338.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094253|ref|ZP_05323731.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255316006|ref|ZP_05357589.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518663|ref|ZP_05386339.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651785|ref|ZP_05398687.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260684811|ref|YP_003216096.1| two-component response regulator [Clostridium difficile CD196] gi|260688469|ref|YP_003219603.1| two-component response regulator [Clostridium difficile R20291] gi|306521574|ref|ZP_07407921.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260210974|emb|CBA66251.1| two-component response regulator [Clostridium difficile CD196] gi|260214486|emb|CBE06969.1| two-component response regulator [Clostridium difficile R20291] Length = 225 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + + ++ + FNVY ++ +D +++ + D IILD+ L DI G+++ Sbjct: 4 LLVVDDDVDILNINQIYFSNIGFNVYTSETAKDAMDIVERIVLDCIILDISLPDIDGYKM 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 ++ K++ P+ LS E+KVRG +G DDYI+KP++ +EL RI A +R+ + Sbjct: 64 CNDIK-EKVNIPIIFLSNYEHEEEKVRGFLAGGDDYITKPYSLKELELRIYARMRQYKNI 122 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ L +N++++ V G I LT E++++ L+ K +K N ++ Sbjct: 123 TSVPNVLKFSALVINVNSRKVTFDGESIDLTTMEFEILLFLAENKEQVFSKIEIYNQVWK 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D + + V I ++RKK+++ + YI+TVWG+GY Sbjct: 183 MPDIGDQHTVQVHIAQMRKKINSLSREHQYIQTVWGKGY 221 >gi|326384127|ref|ZP_08205810.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197287|gb|EGD54478.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 230 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ L ++ + L++ F V G +E D ++LDLGL D+ GF V Sbjct: 7 VLVVDDEPQLLRALRINLRARGFEVTTAATGAQALEAASKRPPDVVVLDLGLPDMDGFTV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L LR S PV +LS + DKV+ L +GADDY++KPF EE +AR+RA +RR Sbjct: 67 LAGLR-GWTSVPVIVLSARTDAADKVQALDAGADDYVTKPFGMEEFLARLRAAIRRGTAS 125 Query: 123 ---AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A++ +V G L V+L AK V G + LT E+ ++ELL + + + L + Sbjct: 126 GIPAEAPVVRAGALEVDLAAKRVTRDGEPVRLTPTEWGVLELLVRSEPNLVGQREILTAV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + V++ LR+KL ++ T G GY Sbjct: 186 WGPTYVNQTNYLRVYLAALRRKLEADPSHPRHLITEAGMGY 226 >gi|297617001|ref|YP_003702160.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144838|gb|ADI01595.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 237 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 120/231 (51%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + ++ L+ E F V V G + + D IILD+ L + G E Sbjct: 5 RILVVDDEVHIVELVKFNLEKEGFQVRVAYDGITALTQAELVRPDLIILDIMLPQLDGLE 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR + STP+ +L+ D V GL+ GADDYI KPF+ E+VAR++A +R Sbjct: 65 VCRRLRSMQDFSSTPIIMLTAKGEEFDTVLGLEMGADDYIKKPFSPREMVARVKARLRAK 124 Query: 120 R------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R + +V DL V D V R+ LT KE+++++LL+ + ++E+ Sbjct: 125 RILEAEKATGRKTLVFKDLIVIPDKHEAFVGERRLELTPKEFELLKLLASNQGKVFSREV 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + + +DV I LR+KL + YIETV G GY +E Sbjct: 185 LLEKVWGYEFSGDTRTVDVHIRHLRQKLGESPSSPQYIETVRGVGYRFKER 235 >gi|255523314|ref|ZP_05390284.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188247|ref|ZP_06856639.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255512968|gb|EET89238.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047373|gb|EFG86815.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 232 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKA-LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++ I DD+ + + I+ L E F V + + G +E E D +ILD+ + ++ GF Sbjct: 4 KLIYIGDDEVNICNIIKSFLVKEGFEVELFNDGLSVLEAFNTKEPDMLILDIMMPEMDGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 + +R K P+ I+S + DK+ GL G DDY++KPF+ EL+ARI++I RR Sbjct: 64 SLCSLIR-QKSCIPIIIVSAKDTEPDKIAGLTLGCDDYLTKPFSPMELIARIKSIFRRIE 122 Query: 119 --SRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + H + +I GD+SVNLD K + G+ I LTG E+ I L KN +++ Sbjct: 123 LDKKQHIEDNKVITIGDISVNLDIKEIHYHGNNIGLTGMEFSFIYYLITNKNRAVSRSEL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ ++ E + D + ++RKKL N AG I+TVWG G+ ++ Sbjct: 183 LDKVWGFENDVETRATDDMVKRIRKKLLN-AGSSLKIDTVWGFGFKIQ 229 >gi|295096184|emb|CBK85274.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 225 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 3 MRVLVVEDNALLRHHLKVQLQEMGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R +S PV +L+ +DKV L +GADDY++KPF+ EE+ AR++A++R Sbjct: 60 DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + I LT EY ++E L ++K+ + Sbjct: 120 RNSGLASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 180 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 222 >gi|284029587|ref|YP_003379518.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808880|gb|ADB30719.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 225 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 126/218 (57%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD AL+ + ++L++E ++ Y+ G+ + + ++ D ++LDL L + G + Sbjct: 4 RILIVDDDTALSEMLSIVLRNEGYDTYLCATGDKAVPAFREFKPDLLLLDLMLPGMDGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R A+ P+ +L+ S D V GL+SGADDY+ KPF +ELVARIRA +RR Sbjct: 64 VCRAIR-AESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARLRRMDE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL++++ +V+ G I LT E+ ++ L+ + T+E+ L ++ Sbjct: 123 PGPESLTIGDLTIDVAGHSVKRSGETIQLTPLEFDLLVCLASKPWQVFTREVLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPEHPEIVVTVRGVGY 220 >gi|166033308|ref|ZP_02236137.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC 27755] gi|166027665|gb|EDR46422.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC 27755] Length = 236 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDDK + I+ +L++ +++V T+ G++ L D +ILDLGL D+ G + Sbjct: 6 RVLIVEDDKNIRKFIQTILEANDYDVIATETGKEAYSLITSRCPDVVILDLGLPDMDGMK 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R A + P+ ++S +DKV L GADDYI+KPF EL+ARIRA +R RG Sbjct: 66 ILKEVR-AWSNMPIIVVSARDHEKDKVEALDMGADDYITKPFGTSELLARIRAAIRHFRG 124 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++ + G L ++ D V V+ LT E++++ LL LT + Sbjct: 125 TSKNQGERQKVTFLNGKLVIDYDKHRVYVEEQDAGLTQNEFRLLSLLGKYAGKVLTYDYM 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + + +I+ V + +R+K+ G +I T G GY Sbjct: 185 MKEIWGPNMKGDNRILRVNMANIRRKIEKNPGQPQFIFTEVGVGY 229 >gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC 25986] gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC 25986] Length = 240 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+KA+ ++ L+ E + V G+ IE + ++FD ++LDL L IPG Sbjct: 7 KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAIEEFEKHQFDLVVLDLMLPKIPGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ IED++ GL+ GADDY+ KPF+ ELVAR+RA+ RR+ Sbjct: 67 VCRTIRDTS-DVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 125 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 A ++ GDL +++ + V+G + LT E++++ L+ + E Sbjct: 126 ADEPAVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L + ++G + + ID + LR KL + ++ TV G GY AK + + Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAKTDKSD 238 >gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 230 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ LK E ++ GE+ + L D I+LD+ L + GF Sbjct: 4 KILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQSPDLILLDIMLPKMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + ISTP+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VCRKLRQS-ISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRMIP 122 Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q S+ GDL+++ D V+ I LT +E+++++ L+ ++ T ++E L Sbjct: 123 GEQPVSNNSVNQYGDLTIDTDRYEVKRGEETIELTLREFELVKFLAAQQGTIFSRETLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +V+ +DV + ++R+KL YI T G GY Sbjct: 183 KVWGYEYYGDVRTVDVTVRRVREKLEKDPANPQYIVTKRGVGY 225 >gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 228 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + + L++ENF + ++ I++ E + ++LD+ + I G E Sbjct: 5 ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQIDGIEA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 +R K + P+ ++S S DK+ GL +GADDYI+KPFN EL+AR+++ +RR + Sbjct: 65 CMRIRKDK-NMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQKY 123 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + +I GDL++N D + + V + LT KE+ ++ELL+ K L+ Sbjct: 124 NTGSNNQKVIIEIGDLTINTDTRQIWVGEKEVRLTPKEFDILELLARNKGIVLSIRKIYE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I LR+K+ YI+T+WG GY Sbjct: 184 EVWKEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGY 226 >gi|226199397|ref|ZP_03794955.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|225928473|gb|EEH24502.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] Length = 217 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 11/225 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP---GF 60 +L+EDD+ +A + LK++ V D +DG +A L L +P G Sbjct: 1 MLVEDDRMIAEGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKRDGI 57 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR ++ PV IL+ ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR Sbjct: 58 DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++S+I G L+++ + V + G + L+ +E+ ++E L R L+K +Y Sbjct: 118 GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 177 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E ++V+I LRKKL G + I V G GY++ + A Sbjct: 178 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 217 >gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp. subtilis str. 168] gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis] gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis] gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp. subtilis str. 168] Length = 235 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E L+ E + V+ G + +E+ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 123 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR +D Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 235 >gi|218442075|ref|YP_002380404.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174803|gb|ACK73536.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 228 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 1/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + L + GE L E+D +ILD + +I G Sbjct: 1 MRILLVEDDLEQLEPLSFALSETGHIIDAVQDGETAQWLINEKEYDLLILDWMIPNISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R ++PV +L+ + DKV GL +GADDY+ KP + EL+AR+RA+ RRS Sbjct: 61 QLCTYYRYLGKTSPVLMLTAKDTTLDKVTGLDAGADDYLVKPVDLLELLARVRALGRRSP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + DLS++L++ +E I L+ +E+Q++E LT+E L++ Sbjct: 121 LWQGDSLKIEDLSLDLNSLKLERNSVTIELSVREFQLLEYFMRHPQQVLTREQIEQSLWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +EPE + I +LRK+L ++IETV+G GY L +AK Sbjct: 181 WGNEPESNAVSTLIRRLRKRL-QLVEVHHWIETVYGVGYRLNPSAK 225 >gi|169632218|ref|YP_001705954.1| osmolarity response regulator [Acinetobacter baumannii SDF] gi|169794452|ref|YP_001712245.1| osmolarity response regulator [Acinetobacter baumannii AYE] gi|184159742|ref|YP_001848081.1| osmolarity response regulator [Acinetobacter baumannii ACICU] gi|213158975|ref|YP_002320973.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|215482041|ref|YP_002324223.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii AB307-0294] gi|260550801|ref|ZP_05825008.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260556885|ref|ZP_05829102.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|262280372|ref|ZP_06058156.1| two-component system response regulator protein [Acinetobacter calcoaceticus RUH2202] gi|293610675|ref|ZP_06692975.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|299768511|ref|YP_003730537.1| osmolarity response regulator [Acinetobacter sp. DR1] gi|301346029|ref|ZP_07226770.1| osmolarity response regulator [Acinetobacter baumannii AB056] gi|301512909|ref|ZP_07238146.1| osmolarity response regulator [Acinetobacter baumannii AB058] gi|301595102|ref|ZP_07240110.1| osmolarity response regulator [Acinetobacter baumannii AB059] gi|332850218|ref|ZP_08432581.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013150] gi|332868815|ref|ZP_08438420.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013113] gi|332874244|ref|ZP_08442164.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6014059] gi|169147379|emb|CAM85240.1| two-component response regulator [Acinetobacter baumannii AYE] gi|169151010|emb|CAO99647.1| two-component response regulator [Acinetobacter baumannii] gi|183211336|gb|ACC58734.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|193078590|gb|ABO13619.2| two-component response regulator [Acinetobacter baumannii ATCC 17978] gi|213058135|gb|ACJ43037.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|213986795|gb|ACJ57094.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii AB307-0294] gi|260406111|gb|EEW99596.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260409491|gb|EEX02792.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|262258150|gb|EEY76884.1| two-component system response regulator protein [Acinetobacter calcoaceticus RUH2202] gi|292827019|gb|EFF85384.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|298698599|gb|ADI89164.1| osmolarity response regulator [Acinetobacter sp. DR1] gi|322509655|gb|ADX05109.1| ompR [Acinetobacter baumannii 1656-2] gi|323519675|gb|ADX94056.1| osmolarity response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332730862|gb|EGJ62170.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013150] gi|332733129|gb|EGJ64327.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6013113] gi|332737528|gb|EGJ68435.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii 6014059] Length = 254 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V L + F I+LD L G Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G S++L +T+ +G + LT E+ +++ L LT++ Sbjct: 142 EVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQIVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +N L GR+ + + IDV + +LR+ + + YI+TVWG GYV Sbjct: 202 MN-LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVF 248 >gi|169343156|ref|ZP_02629700.2| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169298794|gb|EDS80869.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 223 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ I++ L+ E + D +EL + D IILD L DI GF Sbjct: 1 MKILVVDDEVSILQLIKMNLEIEGHVPITAENALDALELVIKEKPDIIILDAMLPDISGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116 ++ ++ P+ +L+ S I DK+ GLQ GADDYI+KPFN EL+ RI + I Sbjct: 61 NLIPKIKNID-DIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHIS 119 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + L V GDL++ LD + ++ I+LT KE++++ L KN ++E LN Sbjct: 120 SDSKKKVKDLTV-GDLTLFLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLN 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + +D+ I +LRKKL +NYI+T++ GY L E Sbjct: 179 KVWGYDFEGTTRAVDILIQRLRKKLGPC---QNYIKTLYKAGYKLDE 222 >gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905] gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905] Length = 713 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIED+ ++A L+ +F V + G++G++ ++D IILD+ L + GFE Sbjct: 488 KILLIEDEVSIAELQRDYLEINDFMVDIQHNGDEGLKQALHGDYDLIILDIMLPGMNGFE 547 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R + P+ +S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 548 ICKQIRAVN-NIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 606 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S +++ ++++ A+ V V G + T KE+ ++ N L+KE Sbjct: 607 LASNKPTNNMLSIHGITIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYE 666 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +V + V I KLR+K+ ++ETVWG GY L Sbjct: 667 RNWGYESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRL 711 >gi|83718337|ref|YP_439100.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|167577524|ref|ZP_02370398.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] gi|167615672|ref|ZP_02384307.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257142209|ref|ZP_05590471.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83652162|gb|ABC36226.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 219 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 121/225 (53%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD L ++ ++ + +V +L D +D I+LDL L D G Sbjct: 1 MRVLLVEDDPWLGEAVRDQIEKDGHPTDFVGNLA-DARRHVAVATYDLILLDLLLPDGRG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + LR LR + PV IL+ + + ++ GL +GADDY+ KPF+ EL AR+ A+ RR Sbjct: 60 LDFLRELRAGGSTVPVIILTALDQVASRIAGLNAGADDYLVKPFDLSELSARVSAVARRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G+ L+ G+LSV+ A++V G RI LT E+ ++E L L+K LY Sbjct: 120 SGNPNPLVKLGELSVDTAARSVMRGGARIDLTASEWALLETLIQHPGMLLSKSQLEERLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DE I+V + +LRKKL G + IETV G GY LR + Sbjct: 180 SFSDEVGSNTIEVHVSRLRKKL-----GADLIETVRGLGYRLRRD 219 >gi|317047742|ref|YP_004115390.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316949359|gb|ADU68834.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 222 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MR+L++ED+ L H + + L+ V D ED E F + D ++DLGL Sbjct: 1 MRVLVVEDNALLRHHLAVQLREMGHQV---DAAEDAKEADYFLQEHVPDIALVDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R I P+ +L+ + KV L++GADDY++KPF+ EE+ AR++A++R Sbjct: 58 DGMSLIRRWRGDAIRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ GHA +I V+L + + + ++ LT EY ++E L ++K+ + Sbjct: 118 RNSGHASQIISMSPFQVDLSRRELTINEEQVKLTAFEYTIVETLIRNAGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKK+ A I TV G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIL-ALYPTEVINTVRGQGY 218 >gi|256376335|ref|YP_003099995.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255920638|gb|ACU36149.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 244 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 123/221 (55%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED + + IE+ L F+V G+ +EL + ++ + ++LDL + G E Sbjct: 19 KVLVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELVRQWDPEVVLLDLNIPGPDGLE 78 Query: 62 VLRALRVAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + ST V +L+ + DK+ GL +GADDY++KPF+ ELVAR+ ++RR R Sbjct: 79 VCRRLR--QFSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRRPR 136 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A S V G + V+LDA++VEV G+ + T E++++ ++ T++ Sbjct: 137 IPAARDSRRVVGPVEVDLDARSVEVNGNHVATTKIEFELLAAITENTRQVRTRDQLRRRA 196 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +DV + LR+KL A +++I TV G GY Sbjct: 197 WGEEWLADDHAVDVHVSNLRRKLVAAGAPRDFIATVRGVGY 237 >gi|255281457|ref|ZP_05346012.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM 14469] gi|255267945|gb|EET61150.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM 14469] Length = 232 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RILL+EDD L ++ LK F V V + L ++D ++LD+ L D GF Sbjct: 3 RILLLEDDANLIDGLQYSLKKNGFEVDTVRSVHAAMQRLADMGKYDLLLLDVTLPDGSGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV +R P+ L+ + +RGL G DDYI+KPF EL +RIRA++RR+ Sbjct: 63 EVCGYVREKNPRIPIIFLTAADEEVNIIRGLDLGGDDYITKPFKLGELCSRIRALLRRA- 121 Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A+S +V GD++V+L V + G + LTG EY+++ LL N +T+E LN Sbjct: 122 GIAESSGDTALVCGDITVDLLGSRVLLGGVNLELTGAEYRLLCLLVRNANRIVTRETILN 181 Query: 177 HLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+DG D + + V++ +LR+K+ ++ TV G GY RE Sbjct: 182 ELWDGTGDYVDDNTLSVYVRRLREKVEKEPSRPQHLITVRGFGYQWRE 229 >gi|167761025|ref|ZP_02433152.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704] gi|167661404|gb|EDS05534.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704] Length = 228 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI L+EDDK +A ++ L+L++E FNV + I + FD ++D+ L D GF Sbjct: 3 RIFLVEDDKEIAKNLALLLRTEGFNVTHASSQSEAISVLDGNRFDLALVDISLPDGNGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ++ A+ + PV L+ V GL GADDYI KPF EL ARIR +R+ G Sbjct: 63 VCTEIKQAQ-NIPVIFLTASGDEASVVTGLNMGADDYIIKPFRPRELTARIRTALRKY-G 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H+ + DL V+ + V+ G + L+ EY+++ + N +T++ L+ L+D Sbjct: 121 HSPAAFEMCDLHVDTASGVVKKGGREVFLSALEYRLLLIFINNPNVIITRDRLLDELWDA 180 Query: 182 RDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + V+I +LR+K+ N G I TV G GY L Sbjct: 181 AGEFVNNNTLTVYIKRLREKIENDPGNPQIILTVRGTGYRL 221 >gi|149923814|ref|ZP_01912205.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] gi|149815326|gb|EDM74870.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] Length = 231 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ EDD LA + + + G + + D ++LDL L GFE Sbjct: 5 RILIAEDDVRLAQLMREAFVRRGYEALLLHGGGEVVPAVWRLRPDLLVLDLMLPGADGFE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +LR LR + + P+ IL+ D+V GL+ GADDYI+KP L+AR+RA++RRSR Sbjct: 65 ILRHLR-PRWTGPILILTARDGDFDQVSGLELGADDYIAKPVATPVLLARVRALLRRSRS 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178 G ++ + G+L + A+ V QG + L+ EY+++ L+ R +T+E L Sbjct: 124 GPREAELELGELRITPSAREVRAQGRLLSLSDSEYELLVFLAARAGEVVTREQLFRELRG 183 Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 YDG D + +D+ + KLR +L G+ I TV GRGY+ Sbjct: 184 IEYDGLD----RSMDLRVSKLRARLREQLEGRAPIRTVHGRGYLF 224 >gi|75520327|sp|Q70FH0|PMRA_PECCC RecName: Full=Transcriptional regulatory protein pmrA gi|37495404|emb|CAE47079.1| response regulator pmrA [Pectobacterium carotovorum subsp. carotovorum] Length = 222 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDDK L + L L E + ++ L + +ILDLGL D G Sbjct: 1 MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDLGLPDDDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R PV IL+ ++D+V GL GADDY++KPF EL AR+RA++RR++ Sbjct: 61 ALLSRWRKNNYQHPVLILTARDKVDDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I +++++L+ + V + + LT KE+ ++ L L+ + +E+ +Y Sbjct: 121 GSSNSKIQVDNITLDLNNQQVLLDEKPVVLTPKEFAILSRLVLKAGYQVHRELLHQDIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+P ++V I LR+K+ GK+ I T+ G GY+L Sbjct: 181 WNDDPSSNSLEVHIHNLRQKI-----GKDRIRTLRGFGYLL 216 >gi|29826613|ref|NP_821247.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29603709|dbj|BAC67782.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 248 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 133/222 (59%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED++ LA ++ L L +E + V V G +G+ + ++ ++LDL L + G+ Sbjct: 1 MRILVVEDERELAQTLRLGLTAEGYRVDVAHDGREGLWKARTGDYAVVVLDLMLPLLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR I+TPV +L+ D+ L +GADDY++KPF LVAR+RA++RR+R Sbjct: 61 RVCAQLRREGITTPVLVLTAKDGDWDQAEALDTGADDYVTKPFTYLVLVARLRALMRRAR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A L+ GDL +++ A+T G + LT +E+ + E+L+ R +TK L+H + Sbjct: 121 GAASPLLAVGDLVLDVAARTCLRSGVAVPLTPREFAVAEVLARRPGEAVTKSEILHHAWP 180 Query: 181 GRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E + +++V + LR+K+ A G ++ + TV G GY L Sbjct: 181 --DEAEDLNLVEVRVSALRRKIDTAFGRQSLL-TVRGVGYRL 219 >gi|53803482|ref|YP_114746.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] gi|53757243|gb|AAU91534.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] Length = 228 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ A + L E F V ED + + IILD L G Sbjct: 1 MRILLVEDDRKAAGLLTRGLGEEGFRVDTAHSAEDTEQKNLHTGYGLIILDWNLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR +I TPV +L+ ++ D+VRGL +GADDY++KPF EEL+AR+RA++RR+ Sbjct: 61 TFCEELRKREIRTPVLMLTARDALTDRVRGLDTGADDYLTKPFAFEELLARVRALLRRAE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ DL ++ ++ V G + LT KEY ++ELL R +++ ++ Sbjct: 121 QARPAMLSVADLVLDPRSRRVTRSGRPLSLTPKEYAILELLLRRAGEVVSRTQLAEEIWR 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +IDV I LR+K+ + G I TV G G+ L Sbjct: 181 TGLIALDNLIDVHISNLRRKV-DPPGVPPLIRTVRGCGFSL 220 >gi|239815987|ref|YP_002944897.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239802564|gb|ACS19631.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 226 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD ++ +++ L +V + G +E + E D + LDL L ++ G Sbjct: 1 MKLLLVEDDPSMQVTLQRALARSRIDVRICGDGALAVEQWRALEPDVVALDLSLPNLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R A + TPV +L+ ++ D++ GL +GADDY+ KPF+ +EL ARIRA+ RR + Sbjct: 61 QVLAQARAAGLRTPVLLLTARGTVGDRIMGLNAGADDYLPKPFDLDELEARIRALRRRHQ 120 Query: 121 GHAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ G L + ++ + + + LT +E +++ L ++ ++KE Sbjct: 121 NAGADAVLNPQEVGGLRFDPESGAIYHRAGILELTPRELALLKALMMKPGHAVSKERLFE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G + + + I+V + +LRKKL AG + T+ G GY+LR Sbjct: 181 LVFPGETDVQYEAIEVVVYRLRKKL---AGTGAALMTLRGLGYLLR 223 >gi|146306491|ref|YP_001186956.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145574692|gb|ABP84224.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 223 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED LA S+ LK + V V G ++ ILD+GL + GF Sbjct: 1 MRILLVEDHPQLAESVAQALKGAGWTVDVLHDGVAADLALSSEDYALAILDIGLPRLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV +L+ ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 AVLARLRDRGQRLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L GDL +L A+ ++G + LT +E ++E + R ++KE ++ Sbjct: 121 LGGEQLQRCGDLVYDLGARRFSMKGEALSLTAREQAVLEAMIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ I+++I +LRKKL G I T G GY+L Sbjct: 181 LDEDASPDAIEIYIHRLRKKLE---GSGVRIVTFRGLGYLL 218 >gi|119510886|ref|ZP_01630010.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119464495|gb|EAW45408.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 250 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 118/228 (51%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54 RIL++ED++ + + + L+ E F V G +E K E FD IILDL L Sbjct: 20 RILVVEDEELIQEMLAVALEEEGFGVITAPDGRSAVEYLKSCEPNSGEPPFDLIILDLML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 I G ++ R LR P+ ILS S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PHINGLDICRLLRHQGNPVPILILSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139 Query: 115 IVRRSR-GHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++RR R L V +V L+ + V V+ + L+ KE++++EL ++ Sbjct: 140 LLRRQRLSSLPQLQVLKHKNVTLNPQECRVLVRDQEVSLSPKEFRLLELFMSYARRVWSR 199 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L+ ++ + K +DV I LR+KL YI TV G GY Sbjct: 200 EQLLDQVWGPEFVGDSKTVDVHIRWLREKLEEDPSHPEYIVTVRGFGY 247 >gi|119486828|ref|ZP_01620803.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119456121|gb|EAW37254.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 824 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 1/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR L+IE+D A AH I+ L + + V V GE G + + +D ++++ L + G Sbjct: 1 MRFLVIENDAAQAHQIKKALIEQGYIVDVVIDGEQGWAYVEAFTYDLLLVNAHLPKLNGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R S P+ +L+ +S D V L++G DD++ KPF+ EL ARIRA++R R Sbjct: 61 DLCQRIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLRSPR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ L ++ ++ V Q H + L+ KEY ++EL LT+ L HL+ Sbjct: 121 QANAPLLKWNSLHLDPISREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +P + I +LR+KL K IETV+G GY L+ ++ ++ Sbjct: 181 FESQPNEHTVRAHIKRLRRKLKTVNADK-IIETVYGVGYRLKPLSQSQS 228 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL ++DD + + +L S V D E + + +ILDL + G E Sbjct: 529 QILAVDDDPVTLNRLLELLPSYGLEVTPLDDPRLFWETLEKTAPELLILDLEMPFFNGVE 588 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 + + +R + + P+ LS + Q+GADDYISKPF + EL+ RI Sbjct: 589 LCQTVRTDRSWNALPILFLSARKEPQTIQDIYQAGADDYISKPFAEAELITRI 641 >gi|332295042|ref|YP_004436965.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] gi|332178145|gb|AEE13834.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] Length = 224 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 1/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD ++++I+ L F V D ++ + IILDL L D+ G E+ Sbjct: 5 ILLVEDDIDISNNIKTFLSLNGFEVIQAFSASDAFDVFDEAKVSLIILDLMLPDMFGSEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR + P+ +LS ++ +KV L GADDY++KPF +EL+ARIR+++RR G Sbjct: 65 LKVLRARGLEIPILVLSALTEEHNKVSLLDLGADDYLTKPFGMKELLARIRSLIRRKNGF 124 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ G V+ + + QG+ ++LT EY+++ L T ++E ++ ++ Sbjct: 125 GL-VVEKGPFRVDKEKSQIYFQGNLMNLTATEYKLLLFLFENNGRTYSREKLIDKVWGEE 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +++DV+I +LR+K+ ++T G GYVL Sbjct: 184 YFVEARMVDVYIRRLREKIETDPSNPQILKTRRGFGYVL 222 >gi|319763004|ref|YP_004126941.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330825084|ref|YP_004388387.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117565|gb|ADV00054.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329310456|gb|AEB84871.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 224 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD AL+ ++ L+++ F V ++ A++LDL L D G Sbjct: 1 MRVLLVEDDAALSEAVCGYLRAKAFVVDAVPSLAQASAALHAAQYAAVLLDLHLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R K V +L+ + D++ GL +GADDY+ KP++ EL+AR+RA+ RR Sbjct: 61 GLLPQVRSLKQRPIVIVLTARDQVSDRIHGLDAGADDYLVKPYDPGELLARLRAVERRRN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++L + V G I LT KE+ ++ +++ T+E + LY Sbjct: 121 AAHVPVLALGDLQIDLSREQVRRAGVPIALTQKEWALLRVMATHPERLHTRESLQDALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE + ++VF+ +LR+KL G+ +IET+ G GY L Sbjct: 181 FDDETDSNTLEVFVSRLRRKL-----GREHIETLRGLGYRL 216 >gi|152965772|ref|YP_001361556.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151360289|gb|ABS03292.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ LA ++ L +E V + G G + + +D ++LDL L G+ Sbjct: 1 MRVLLVEDEVLLADTVRRGLAAEGVEVDLAHDGPTGYRRAREHAYDVLVLDLMLPGRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR A + TPV +L+ D+V GADDY++KPF+ L+AR+RA+ RR Sbjct: 61 EVCRDLRAAGVWTPVLVLTAKDGEYDQVDAFDLGADDYLTKPFSFPVLLARLRALHRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL ++ + V + LT +E+ ++E L R++ + K L ++D Sbjct: 121 PERPVVLRAGDLVLDPATRRVHRGETPLTLTAREFALLEFLLRRRDEVVPKAEILRAVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++V++ LR+K+ +A ++ ++TV G GY L Sbjct: 181 PEVSTDPNVVEVYVGYLRRKV-DAPFARHALQTVRGAGYRL 220 >gi|251797185|ref|YP_003011916.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544811|gb|ACT01830.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 219 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 129/219 (58%), Gaps = 7/219 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++IEDD+A++ I+L L+ + G++ + + D +LD+ L D+ G+E+ Sbjct: 4 IIIIEDDRAISDLIKLNLELAGYVCRQAYSGQEAQSILPDFSPDLALLDISLPDMEGYEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L R ++ PV L+ +++ DKV+GL+ GADDYI KPF EL+ARI A++RR G Sbjct: 64 LE--RFKRMEVPVIFLTARNALVDKVKGLKMGADDYIVKPFEAMELLARIEAVLRRY-GR 120 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + G L ++L+ + V+ +G I LT KEY+++ LL +N L++E L ++D Sbjct: 121 KSDRLNFGGLEIHLEERIVKKEGVIIELTMKEYELLLLLINNRNKALSREKILELVWDYE 180 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +D+ I K+RKKL G ++ I+TV+ GY L Sbjct: 181 YSGETRTVDIHIQKIRKKL----GWEDLIKTVYKFGYRL 215 >gi|148657588|ref|YP_001277793.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148569698|gb|ABQ91843.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 236 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 120/220 (54%), Gaps = 5/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ AL + L L+ E F+V G + + + + D ++LDL + ++ G+E Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LRA AK S TPV +L+ DK+ GL+ GADDY++KPFN EL+ARIRA++RR++ Sbjct: 64 LRAF--AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ D+ ++ +TV V G + LT E+ ++ L ++ L+ + Sbjct: 122 TPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVS 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + IDV I LR K+ YIETV+G GY Sbjct: 182 GDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGY 221 >gi|323693830|ref|ZP_08108022.1| response regulator receiver protein [Clostridium symbiosum WAL-14673] gi|323502133|gb|EGB18003.1| response regulator receiver protein [Clostridium symbiosum WAL-14673] Length = 225 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD+ L +I++ L ++ + G DG +D +I+D L ++ G Sbjct: 1 MKILLIEDDEVLCKTIQMSLTKAGYDTEICHTGTDGFLYACSGAYDCLIIDRMLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +L+ALR KI TP + + + D++ GL +GADDYI+KP+ EEL+ARIRA+ RR Sbjct: 61 TLLQALRRRKIQTPAIFSTALDGLNDRINGLDAGADDYIAKPYAIEELLARIRAVTRRLG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R + + DL + + + Q + L+ KE ++E TL +E+ L +++ Sbjct: 121 RIEEECTLTFEDLVFLPEHRELRYQNASVSLSKKESSLLEYFFRNPGRTLNREVILGYVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E +D +I LR++L I TV G GY L Sbjct: 181 GASSEVEDGNLDNYIYFLRRRLRTLNAPVK-ITTVHGVGYRL 221 >gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42] gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42] gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens LL3] Length = 236 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E L+ E ++V+ G + +E+ + + D I+LD+ L + G E Sbjct: 5 KILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKDGVE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVR-KKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 124 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR +D Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 236 >gi|26990087|ref|NP_745512.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24985016|gb|AAN68976.1|AE016529_7 DNA-binding response regulator CpxR [Pseudomonas putida KT2440] Length = 233 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 121/235 (51%), Gaps = 24/235 (10%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++DD+ L + L L E F D GE+G L F ++LD+ L I G EV Sbjct: 4 VLLVDDDRELTEMLSLYLAREGFQATAADTGEEGETLALSGHFQVVVLDVMLPGISGIEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR +R A+ PV +L+ D++ GL+ GADDY+ KP + ELVAR+RAI+RR Sbjct: 64 LRRVR-ARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRRVQPY 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE- 172 S + +G L + + + LTG E+ ++E L+ + ++K+ Sbjct: 123 LMGETSAPEVPEQVRSGALKMWPGRREARWGAATLELTGSEFSLLEALARQAGQLVSKQD 182 Query: 173 MFLNHL------YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + LN L YD R IDV + +R+KL A G ++I++V G GY+L Sbjct: 183 LSLNALGRPLTRYDRR-------IDVHVSSIRQKLGPRADGSSWIQSVRGMGYML 230 >gi|331268624|ref|YP_004395116.1| DNA-binding response regulator [Clostridium botulinum BKT015925] gi|329125174|gb|AEB75119.1| DNA-binding response regulator [Clostridium botulinum BKT015925] Length = 227 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 128/226 (56%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D++++ + +++ L EN++V + G+D I+L + D I+LDL L D+ GF Sbjct: 1 MKILLVDDEESILNLVKMNLMFENYDVVTAECGKDAIKLFQSELPDLIVLDLMLPDMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V+ ++ P+ +LS + I D++ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 QVIHEIQNINSEIPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + +I G + + + + V + ++ T E++++ L+ T+E Sbjct: 121 KVKLTTNKETKKIIEKGFIKIMVLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTREE 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + +D+ I ++RKKL N I+T++G GY Sbjct: 181 LLDKIWGYDFSGNTRAVDIHIKRIRKKLLNHEEA---IKTIYGVGY 223 >gi|288573784|ref|ZP_06392141.1| two component transcriptional regulator, winged helix family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569525|gb|EFC91082.1| two component transcriptional regulator, winged helix family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 222 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 +RIL++EDD + I+ L + V +V D+ E F +ILDLGL D G Sbjct: 3 IRILIVEDDGMIGEEIQEGLSRRGYTVDWVRDM-ESAATALDLENFSMMILDLGLPDGSG 61 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+L+ +R PV IL+ ++ +++ GL +GADDY+ KPF EEL ARIRA+ RR Sbjct: 62 LELLQKMRDGGNRLPVIILTAWDTVPNRINGLDNGADDYMVKPFELEELSARIRALARRV 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 RG + I DL ++ K V G + L+ EY ++ L++E LY Sbjct: 122 RGDSSPTIRIADLEIDPATKRVSKDGREVRLSHSEYVLLTTFVENVGIVLSRERLEASLY 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E I V I LR+KL G + ++ V G GY++ Sbjct: 182 GWEKDVESNAIQVHIHNLREKL-----GTDIVKNVRGFGYLM 218 >gi|160936076|ref|ZP_02083449.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC BAA-613] gi|158440886|gb|EDP18610.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC BAA-613] Length = 219 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 128/221 (57%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+K + I+L L + ++ G + + L + FD I+LD+ L + G+ Sbjct: 2 IKVLIVDDEKPICDLIDLNLSASGYHCTSVQDGAEALRLIENQFFDLILLDIMLPGVDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R I PV ++ ++D+V+GL+ GADDY+ KPF+ ELVAR+ A++RR Sbjct: 62 DIMSYIRPMDI--PVIFITARHEVKDRVKGLRLGADDYLVKPFDVVELVARVEAVLRRY- 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+ GD++V+++A+ V G + LT KE+ ++ L KN L +E +++ Sbjct: 119 NKTERLLTAGDVTVDVEARRVTRAGRNVELTNKEFGLLVLFIQNKNVALFRETLYEKVWE 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G + + +D+ + +LR+KL G +N + V+ GY L Sbjct: 179 GEYSGDSRTLDLHVQRLRRKL----GWENNLVAVYKVGYRL 215 >gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13] Length = 227 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 127/219 (57%), Gaps = 7/219 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + + L+ EN+ V + GE+ +++ +E D IILD+ + D+ GF Sbjct: 7 VLVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEVDLIILDVMMPDMDGFTA 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R K P+ +L+ S DKVRGL+ GADDY+ KPF+ +EL+AR+ A++RRS Sbjct: 67 CKKIR-EKYMMPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALLRRSNQA 125 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ +++V A+ V V G RI+L +EY ++ L + ++E + ++ G Sbjct: 126 FFDVVSHSEITVQKSARQVLVGGERINLARREYDLLLFLMEHEGKVFSREQLHDVIW-GL 184 Query: 183 D--EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D + + +D + LR KL + AG K I+TVWG GY Sbjct: 185 DTEKGSYRTVDTHVKTLRFKLKD-AGAK--IKTVWGIGY 220 >gi|15896909|ref|NP_350258.1| KDP operon transcriptional regulatory protein KdpE [Clostridium acetobutylicum ATCC 824] gi|15026780|gb|AAK81598.1|AE007863_1 KDP operon transcriptional regulatory protein KdpE (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|1747435|gb|AAB39096.1| KdpE [Clostridium acetobutylicum ATCC 824] gi|325511085|gb|ADZ22721.1| KDP operon transcriptional regulatory protein KdpE (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 232 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 114/224 (50%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK + + I L ++ + TD G + I L D I+LDLGL DI G EV Sbjct: 7 ILVVEDDKPIRNFITTALSTQGYKYSETDKGNEAIALSMANSPDLIVLDLGLPDIDGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 + +R P+ I+S + KV L GADDYI+KPF EL+ARIR +R Sbjct: 67 IGKIREWS-KVPIIIVSARENERQKVEALDKGADDYITKPFGIGELLARIRVSLRHVNAG 125 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++ + +LSV+ + + V V G +HLT EY+++ LL LT +N Sbjct: 126 KAKDKSIDFFKVKNLSVDFEKRRVSVNGKEVHLTPIEYKIMFLLCKYSGRVLTHNFIINE 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E + + VF+ LR+K+ YI T G GY L Sbjct: 186 IWGASVGNENQSLRVFMANLRRKIEKDPAQPEYIYTEVGVGYRL 229 >gi|83955132|ref|ZP_00963788.1| two-component transcriptional regulator [Sulfitobacter sp. NAS-14.1] gi|83840461|gb|EAP79634.1| two-component transcriptional regulator [Sulfitobacter sp. NAS-14.1] Length = 232 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 2/163 (1%) Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E +RA+R A PV +L + +D L GADD I P E+++R +I+RR Sbjct: 60 EYIRAMRTAGCVNPVIVLKDFRNAKDTSDLLNLGADDVIVSPIRGAEVLSRTNSIIRRHY 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G+L+ D + V G RI L+ +EY + + L+L N ++K+ + +Y Sbjct: 120 GHASESVIVGELTAYFDGRDPIVSGSRIKLSKREYSVFQHLALNSNKVISKDAIYDAIYG 179 Query: 181 GR-DEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVL 221 D+P K+IDV+ICKLRKKL++A+ G YIETV GRGY L Sbjct: 180 SSIDQPFDKVIDVYICKLRKKLASASKSGWQYIETVHGRGYKL 222 >gi|332186432|ref|ZP_08388176.1| response regulator [Sphingomonas sp. S17] gi|332013415|gb|EGI55476.1| response regulator [Sphingomonas sp. S17] Length = 236 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 124/220 (56%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD A A +I LK V G+ G+EL FDAI LD L + G + Sbjct: 16 ILVIEDDGATAAAIIAELKQHGHEVTHASDGDAGLELATREAFDAITLDRMLPGLDGLSL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR I+ PV +LS +S +++++ GL++G DDY++KPF+ E+ R+ ++RR R Sbjct: 76 VARLRERHITIPVLMLSALSDVDERIAGLRAGGDDYLTKPFDFAEMAMRVEVLLRR-REQ 134 Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+++++ G + +L +TV+V G + L E++++E L + +T+ + ++ Sbjct: 135 AEAVVLRGGGIECDLVRRTVKVDGEPVRLLHMEFRLLEFLMRNQGEVMTRRIIFERVWGY 194 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +I V I +LRKK+ + + I+TV G GY+ Sbjct: 195 YFDPGANLISVHIARLRKKI-DRPDRSSPIQTVKGEGYLF 233 >gi|237745639|ref|ZP_04576119.1| response regulator receiver:Transcriptional regulatory protein [Oxalobacter formigenes HOxBLS] gi|229376990|gb|EEO27081.1| response regulator receiver:Transcriptional regulatory protein [Oxalobacter formigenes HOxBLS] Length = 223 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED++ + +++ L+++ TD G + L FD IILD+ L + G + Sbjct: 3 KILIIEDNQDIRYNLVDFLEAKGHKTDNTDDGLKALALLTLQSFDLIILDIMLPGMDGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR TPV LS +++D+++GL +GADDY+ KPF+ EL RI AI+RR + Sbjct: 63 LCRELRARGNETPVLFLSARDTVQDRIQGLSTGADDYLVKPFSLAELELRISAILRRVKR 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A L+ D+ +NLD TV + L +++++LL L+ + +++E N L+ G Sbjct: 123 PAFHLLQVADIVMNLDELTVTRADVPVRLNPMMFKILKLLMLKSPSVVSREEMENELW-G 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D P+ + I LR + + G + ++TV G G+ LRE Sbjct: 182 DDRPDSDSLRTHIHNLRAVI-DGPFGTSLLKTVSGFGWTLRET 223 >gi|218680536|ref|ZP_03528433.1| two component transcriptional regulator [Rhizobium etli CIAT 894] Length = 228 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD L S++ L+ + V G+ G+E + +F A++LD+ L + G Sbjct: 11 VRILLVEDDSILGSSLKKALEKHAYGVDWMRDGQSGLEATEHSDFAALVLDINLPLLSGI 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R + P+ +L+ + ++ KV GL GADDY+ KPF+ +EL+AR+RA++RR Sbjct: 71 EVLKGIRRKGNTVPILLLTALDNVRRKVEGLDEGADDYLVKPFDLDELLARLRALIRRRD 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +SL+ GD+ V+ A ++H T KE+ +++LL R +TK LYD Sbjct: 131 GRTESLLRCGDVEVDPSAMVARKGNIQVHTTAKEFHLLKLLMERSGRYVTKNDIEYALYD 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E I+V I LRKKL G +I+++ G GY++ Sbjct: 191 AYSSVESNAIEVTIYNLRKKL-----GTEFIKSIRGIGYMI 226 >gi|187934305|ref|YP_001885328.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187722458|gb|ACD23679.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 229 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+K++ + I L L+ E + ++ GED I + + + +ILDL L DI G Sbjct: 1 MKILVVDDEKSIVNLIRLNLEVEGYEPIISMTGEDAIHKFETEKPELVILDLMLPDISGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V++ + PV +L+ S I DK+ GLQ GADDYI KPFN EL+ RI+A+ +R Sbjct: 61 DVIKRFQKIDSEVPVIMLTAKSQINDKLLGLQLGADDYIIKPFNSTELILRIKAVTKRIT 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S + I L + D + V ++ I +T KE+ + L+ N T+E L Sbjct: 121 KKSCSKNNNEIKIEKLKILKDERKVFIEEKEIFMTYKEFDTLLLMMENHNKVFTRENLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + +D+ I ++RKK+ + N ++TV+G GY L Sbjct: 181 RVWGDEYDVNTRAVDILIQRVRKKMGKYS---NKLKTVYGVGYKL 222 >gi|83944168|ref|ZP_00956624.1| two-component transcriptional regulator [Sulfitobacter sp. EE-36] gi|83845035|gb|EAP82916.1| two-component transcriptional regulator [Sulfitobacter sp. EE-36] Length = 234 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 2/163 (1%) Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E +RA+R A PV +L + +D L GADD I P E+++R +I+RR Sbjct: 62 EYIRAMRTAGCVNPVIVLKDFRNAKDTSDLLNLGADDVIVSPIRGAEVLSRTNSIIRRHY 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA ++ G+L+ D + V G RI L+ +EY + + L+L N ++K+ + +Y Sbjct: 122 GHASESVIVGELTAYFDGRDPIVSGSRIKLSKREYSVFQHLALNSNKVISKDAIYDAIYG 181 Query: 181 GR-DEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVL 221 D+P K+IDV+ICKLRKKL++A+ G YIETV GRGY L Sbjct: 182 SSIDQPFDKVIDVYICKLRKKLASASKSGWQYIETVHGRGYKL 224 >gi|330504045|ref|YP_004380914.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918331|gb|AEB59162.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 236 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL +EDD LA ++ L F+V ++ G +G++L + +FD I++D+ L G E Sbjct: 10 RILAVEDDPLLARHLQSHLVGCGFDVTLSHDGSEGLQLAESEDFDLILMDILLPGTNGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 L+ LR + S PV ++S + ++++ G GADDY+ KPF+ EL R+ AI+RR Sbjct: 70 ALQRLRRQR-SVPVLLMSALGDEQNRIAGFSQGADDYLPKPFSLGELSVRVEAILRRVAY 128 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R Q+ L + V +G+ I LT EY+++ELL K+ L+K Sbjct: 129 ERREPQASAEGNGLQFDEGRSDVAFRGNWIGLTPSEYRVLELLWRHKDEALSKPFLYQQA 188 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +D+ + +R+KL ++TVWG+GYVL Sbjct: 189 LRRAYAQHDRSLDMHVSHIRRKLQAVGHEATRVDTVWGKGYVL 231 >gi|228991458|ref|ZP_04151410.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442] gi|228768260|gb|EEM16871.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442] Length = 231 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +++Y G++ + + Y+ D +ILD+ + G EV Sbjct: 6 ILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLYQIDLMILDIMMPKRNGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN EL+AR++A++RRS Sbjct: 66 CQQVREEN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSFQ 124 Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 125 QVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR+KL G+ I TVWG GY Sbjct: 185 RVWNEDGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGY 227 >gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115] gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 222 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ + ++ L+ + V G G+ + + D ++LDLGL D G E Sbjct: 4 RILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSAREHAPDLVVLDLGLPDFDGAE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S P+ IL+ M +++ KV L++GADDY++KPF+ EELVAR++ +R + Sbjct: 64 VARRLRKTS-SVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQ- 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H + +I G L ++ + GH + L+ KE+ ++ L+ + +++ +++G Sbjct: 122 HGE-VISIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++DV + +R KL + G I TV G GY L+ Sbjct: 181 ELPSNSNVVDVHMANMRAKLRD-LDGYGIIRTVRGIGYALK 220 >gi|254486503|ref|ZP_05099708.1| two-component response regulator [Roseobacter sp. GAI101] gi|214043372|gb|EEB84010.1| two-component response regulator [Roseobacter sp. GAI101] Length = 223 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD I L+ E V + G +G+ +D +++D L ++ G Sbjct: 1 MKLLVVEDDATTGSYIARGLREEGHTVDLVPHGREGLFQASSGSYDVLVIDRMLPEVDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A +TPV L+ M S++D++ GL +G DDY+ KPF EL AR+ A+ RR + Sbjct: 61 TLVKTLRGAGNTTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVAALARRPQ 120 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q ++ GDL ++L + V G I L +E+ ++E L RK T+ M L ++ Sbjct: 121 VLEQDTVLRAGDLEMHLITRKVTRGGQDIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P +++ I +LR K+ + I TV G GY Sbjct: 181 DISFDPMTNVVETHISRLRAKVDKPF-DRELIHTVRGAGY 219 >gi|188589555|ref|YP_001920458.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|188499836|gb|ACD52972.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E3 str. Alaska E43] Length = 226 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+K++ + I L L+ E + ++ GED I + + + +ILDL L DI G Sbjct: 1 MKILVVDDEKSIVNLIRLNLEVEGYEPIISMTGEDAIHKFETEKPELVILDLMLPDISGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V++ + PV +L+ S I DK+ GLQ GADDYI KPFN EL+ RI+A+ +R Sbjct: 61 DVIKRFQKIDSEVPVIMLTAKSQINDKLLGLQLGADDYIIKPFNSTELILRIKAVTKRIT 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S + I L + D + V ++ I +T KE+ + L+ N T+E L Sbjct: 121 KKSCSKNNNEIKIEKLKILKDERKVFIEEKEIFMTYKEFDTLLLMMENHNKVFTRENLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + +D+ I ++RKK+ + N ++TV+G GY L Sbjct: 181 RVWGDEYDVNTRAVDILIQRVRKKMGKYS---NKLKTVYGVGYKL 222 >gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 273 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+K +A ++ L E F V G++ ++ D I+LDL L G E Sbjct: 42 KILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEPPDLILLDLMLPGTDGIE 101 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R K P+ +++ S DKV GL+ GADDY++KPF+ EL+ARI+A +RR R Sbjct: 102 ICRKVR-EKYRMPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANLRRVRD 160 Query: 122 HAQSLIVTGDL----SVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H +S GD S+ +D + V H+ + LT +E++++ ++ N LT+E L Sbjct: 161 HGESSTDPGDQVQVGSLTIDQGSYLVTKHQKTLDLTHREFELLLYMAKHVNQVLTREHLL 220 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV I +LR+K+ YI T G GY +R+ D Sbjct: 221 QSVWGYDYFGDVRTVDVTIRRLREKIEQDPSQPQYIITRRGIGYTMRDPGTD 272 >gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola F0402] Length = 228 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 125/228 (54%), Gaps = 3/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++EDD+ +A + L+ E + V G +EL + D ++LD+ L + G E Sbjct: 3 KVLIVEDDEGIADFLRFELEHEGYGVLHAADGRTALELFESDTPDILLLDIMLPQLNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R S PV +L+ DKV GL SGADDY++KPF EEL+AR+RA++RR+ Sbjct: 63 VLRRIRKTS-SVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIRRNEV 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 S++ + ++ A V V L+ EY +++ KNT L+++ + ++ Sbjct: 122 RGTSVLKLRAIELDPAAMKVMVNKKHTILSKTEYLLLKTFIENKNTVLSRDRIIGEVWGE 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 + +DV++ LR K+ G+ YI TV G GYV+R + DE+ Sbjct: 182 NYYIDENSVDVYVRHLRSKIDEKT-GEEYISTVRGVGYVMR-DGNDES 227 >gi|222147648|ref|YP_002548605.1| two component response regulator [Agrobacterium vitis S4] gi|221734636|gb|ACM35599.1| two component response regulator [Agrobacterium vitis S4] Length = 225 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +++LIEDD+ A I LK + V G G+E + D +I+D L + G Sbjct: 3 KVILIEDDEDTAQDICAELKDYGYAVDWESDGARGLERARNGGADILIVDRMLPGMDGLA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ LR ++ TPV ++S +S++ D+VRGL++G DDY++KPF ELVAR+ A++RR Sbjct: 63 VIDTLRREQVRTPVLVISALSAVNDRVRGLRAGGDDYLTKPFAILELVARVEALLRRPAD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + ++ G L ++L ++ I L +E++++E + LT+ M ++ Sbjct: 123 MSAKVLRVGPLELDLLERSACRGEREIELLPREFKLLEYMMRHCEQLLTRGMLFEEVWKY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P+ +IDV + +LR+K+ + G I V G G+VLR Sbjct: 183 KFVPDSNLIDVHMGRLRRKIDH-PGDHPMISNVRGEGFVLR 222 >gi|75908637|ref|YP_322933.1| response regulator receiver modulated diguanylate cyclase [Anabaena variabilis ATCC 29413] gi|75702362|gb|ABA22038.1| response regulator receiver modulated diguanylate cyclase [Anabaena variabilis ATCC 29413] Length = 684 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + + L S+++ V GE+G + Y +D I+LDL L + G Sbjct: 1 MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGEEGWNFAELYTYDLILLDLILPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + TPV +L+ + KV GL +GADDY++KPF+ +EL+ARIRA++RR Sbjct: 61 SFCRQLRASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L+ +L LD T EV G +HLT KEY ++EL + + ++ L Sbjct: 121 SALPPLLEWNNL--RLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQL 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + P + I LR+KL A ++ I+TV+G GY L+ Sbjct: 179 WSFEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLK 222 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+++++DD + +++ +L + VY + +E E + +IL + + G E Sbjct: 396 RVMIVDDDPQILTALQTLLSAWGIKVYTLAHSQGFLEAMALAEPELLILKMEMPSTSGIE 455 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 + + R P+ L+ + + +GADDYISKP + EL+ RI Sbjct: 456 LCQIARQEPQWAGLPILFLTNRHDTLTRQQIFIAGADDYISKPIVEPELIGRI 508 >gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens TA208] Length = 235 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 129/233 (55%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E L+ E ++V+ G + +E+ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 123 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR +D Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 235 >gi|297160788|gb|ADI10500.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA ++ L +E F V V G G+ + + ++D I+LD+ L + G+ Sbjct: 1 MRLLIVEDEKRLATALARGLAAEGFAVDVAHDGVSGLHMAQEQDYDLIVLDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR TP+ +L+ D+ GL +GADDY++KPF+ L ARIRA++RR Sbjct: 61 RVCAQLRAVGDETPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLQARIRALLRRRT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL+V+ A+ VE G + LT KE+ ++E L+L ++K L H++D Sbjct: 121 RAGVQVLKIGDLTVDPGARRVERAGAEVTLTAKEFAVLEQLALHAGRVVSKADVLAHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I++V++ LR+KL + G+ I TV G GY L + Sbjct: 181 FAYDGDPNIVEVYVSALRRKL-DLPFGRRSITTVRGAGYRLEADG 224 >gi|296444506|ref|ZP_06886471.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296258153|gb|EFH05215.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 225 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 126/227 (55%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILLIED+ +A I ++ F + V LG D + + +D ++LD L D G Sbjct: 1 MRILLIEDESEMARLIASLVAHAGFVIDRVGTLG-DALASLRVNAYDLLLLDRRLPDGDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L +R A+ V +++ + + +K+ GL++GADDY++KPF EL+ARIRA +RR Sbjct: 60 ISLLPEVRAAQPGIRVMMITALDGLTEKISGLEAGADDYLTKPFQGAELIARIRACLRRP 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G I G ++ +LD+ V V G I LT +E ++ L R + +E + +Y Sbjct: 120 GGDVLPPIRVGAVAFDLDSNEVTVAGRTIILTRREMMLLRSLMQRASRVAARETLIQEIY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +E + +D + +LRK+L+ A G + I TV GRGY+L E A+ Sbjct: 180 GVDEEVQANALDSIVSRLRKQLA-AYGARIEIHTVKGRGYLLTEQAR 225 >gi|254520350|ref|ZP_05132406.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226914099|gb|EEH99300.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 118/218 (54%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++++ +++ L+ N V GE+G++L +LD+ L I GF+ Sbjct: 3 KILLVEDEESIRAFLKINLQRNNLQVIEASTGEEGLKLANIENPKIAVLDVMLPGIDGFK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ DK+ GL+ GADDYI KPFN E+V RI+A++RR Sbjct: 63 VCNKLRSEFPGMGIIMLTAKGQDMDKIMGLEYGADDYIVKPFNPLEVVLRIKALLRRLGD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + G ++L ++ V I +T KEY ++++ N T++ L+ ++ Sbjct: 123 EDKDKLELGPFLIDLYSQKVLKDNIEIDVTPKEYLLMKIFLENPNKAFTRDELLDLVWGE 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + KIIDV I +LR K+ + A YIET+WG GY Sbjct: 183 NYFGDAKIIDVNIRRLRAKIEDNASDPKYIETIWGIGY 220 >gi|303242250|ref|ZP_07328738.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590238|gb|EFL59998.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD ++ + L+ F+V + + G G+ K EFD +ILD+ L I GFE Sbjct: 3 RILIVEDDHSIGELEKDYLEINGFSVKICNEGVSGLNCIKEEEFDLLILDIMLPGIDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +L+ +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR+ A + + Sbjct: 63 ILKRVRDVK-DIPILLVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVNAHISKYER 121 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + ++ + G L + +++ V V G +++ KEY+++ + N +E Sbjct: 122 LKSKYGNENPNETFTIRG-LEIQKESRRVFVNGKELNMAQKEYELLLFMVQNPNRVFGRE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V I ++R+K+ Y+ETVWG GY R Sbjct: 181 ELFERIWGFDSLGDAATVTVHIARIREKIETDPSNPQYVETVWGAGYRFR 230 >gi|227326776|ref|ZP_03830800.1| DNA-binding transcriptional regulator BasR [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|301069186|dbj|BAJ11972.1| response regulator PmrA [Pectobacterium carotovorum subsp. carotovorum] Length = 222 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDDK L + L L E + ++ L + +ILDLGL D G Sbjct: 1 MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALISSAHYSLVILDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R PV IL+ + D+V GL GADDY++KPF EL AR+RA++RR++ Sbjct: 61 TLLSRWRKNHYQHPVLILTARDKVNDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + S I +++++L+ + V + + LT KE+ ++ L L+ + + +E+ +Y Sbjct: 121 GSSNSKIQVDNITLDLNNQQVLLDDKPVVLTPKEFAILSRLVLKAGSQVHREVLHQDIYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+P ++V I LR K+ GK+ I T+ G GY+L Sbjct: 181 WNDDPSSNSLEVHIHNLRHKI-----GKDRIRTLRGFGYLL 216 >gi|328944343|ref|ZP_08241807.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] gi|327491262|gb|EGF23037.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] Length = 234 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 126/221 (57%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED+K LA +I +L +++ G+ G+ C+ +DA I+D L + G Sbjct: 12 MNILVIEDEKNLADAIVRILTDAHYHAEAVYDGKSGLISCQSGLYDAAIVDRMLPGMDGL 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R + S P+ IL+ +S +DKV GL +GADDY++KPF EL+AR+RA+ RR Sbjct: 72 DIVKEVRRSGDSMPILILTARTSTQDKVDGLDAGADDYLTKPFEAPELLARLRALTRRQG 131 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + D S++L + + H +HL+GKE++++++L + ++K+ L +++ Sbjct: 132 DVIIEQMKFADFSLDLSTHDLMCKNHSVHLSGKEFEVLKMLLSAPSRVVSKQDLLTYVWG 191 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ ++ LRKKL+ K I T+ GY L Sbjct: 192 TTADASENSVEAYVSFLRKKLAY-VHSKVQITTLRMLGYRL 231 >gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 236 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 15/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E + VY GE+ +E + + D I+LD+ L G E Sbjct: 4 KILVVDDEKPIADILQFNLTKEGYTVYCAYDGEEALEKVEEVQPDLIVLDIMLPKRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K + P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR--- 119 Query: 122 HAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 H Q+ I G L ++ DA V +G I LT +E++++ L+ +T Sbjct: 120 HQQTPAAPGEEEESNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMT 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV + +LR+K+ + +I T G GY LR Sbjct: 180 REHLLETVWGYDYYGDVRTVDVTVRRLREKVEDNPSHPEWIVTRRGVGYYLR 231 >gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 230 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + + I++ L E F V D G ++ K FD ++LD+ L G Sbjct: 3 KLLIVDDEEKIRNLIKVYLVKEGFEVDELDNGNRVVDSIKSSHFDMVVLDIMLPGPDGLS 62 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R KIS P+ +L+ D++ GL+ GADDYI KPF+ ELVARI AI+RR Sbjct: 63 LCKEIR--KISNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAILRRVA 120 Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++ +L++N D +TVEV+G I LT KE+ ++ ++ ++E Sbjct: 121 AQPIIQEDRTAILSFSELTINPDNRTVEVRGSEIALTPKEFDLLYFMAKTPGRAFSRENL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L +++ +++ +D I +LR KL N G K I TVWG GY Sbjct: 181 LENVWGYDFYGDLRTVDTHINRLRDKL-NMEGTKQAITTVWGVGY 224 >gi|317968518|ref|ZP_07969908.1| two-component system response regulator [Synechococcus sp. CB0205] Length = 268 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 126/240 (52%), Gaps = 17/240 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +++++D+ A+ + + L+ + V + GE+ + L + D ++LD+ L + GF V Sbjct: 25 VMVVDDEPAVRRVLVMRLQLAGYQVVCAEDGEEALALFHKEQPDLVVLDVMLPKLDGFAV 84 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR RG Sbjct: 85 CRRLR-AESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 143 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A Q ++ GDL V+ + + V G RI LT E+ ++ELL + + Sbjct: 144 SATNEPRDVPAGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPR 203 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV---LRENAK 226 L L Y R +++++DV++ +LR KL I TV G GY + ENA Sbjct: 204 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGYASQRMGENAP 263 >gi|150390837|ref|YP_001320886.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950699|gb|ABR49227.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 236 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 11/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + I + L F + G D IE+ D I+LDL L DI G E Sbjct: 5 KLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDIDGLE 64 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R +R+ + TP+ +L+ S DKV GL GADDYI+KPF EL AR+R ++RR Sbjct: 65 VCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLRRV 124 Query: 120 RGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + +I D++++++ V+ Q I T E+++++ L+ L+ Sbjct: 125 MDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESLEHVLS 184 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + L + + P+++I+DV I +RKKLS+ YIET+ G GY ++ Sbjct: 185 RSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKMK 236 >gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 231 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +N+Y G++ +++ YE D +ILD+ + G EV Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + P+ +LS + DK+ GL +GADDY+ KPFN ELVAR++A++RR Sbjct: 65 CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + +I ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 124 NATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR KL + +I TVWG GY Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNEEKFIHTVWGVGY 227 >gi|294620680|ref|ZP_06699887.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291599660|gb|EFF30670.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] Length = 218 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ A+ + L+ + VY G++ ++ + EFD +LD+ L +I G+ Sbjct: 1 MKILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV +R + PV L+ I D+V GL+SGA+DYI+KPF+ EEL+AR+ ++RR+ Sbjct: 61 EVFAYMR--EYDLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVLRRNG 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L+ + +N + V + + LT KEY+++ L K L +E ++ Sbjct: 119 KSSSNKLLKWKYIEINEKTRAVTARNQAVSLTPKEYELLLYLIRNKAIILPREKIYQKIW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +EP + +D+ I ++R KL + T++G GY+L Sbjct: 179 GREEEPNSRTLDLHIQRIRNKLQLGQD----LRTIYGVGYLL 216 >gi|257455860|ref|ZP_05621080.1| transcriptional activator protein CopR [Enhydrobacter aerosaccus SK60] gi|257446745|gb|EEV21768.1| transcriptional activator protein CopR [Enhydrobacter aerosaccus SK60] Length = 244 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+K L I+ L F V G DG +F +++D+ L D+ GF Sbjct: 1 MKVLLVEDEKNLGEYIKKGLTEAGFIVDHHMTGLDGYHALMTEDFSVVVMDVMLPDVSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ R A TPV L+ + D+++G++ G DDY++KPF EL+ RI++++RR+ Sbjct: 61 ELIQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S+I DL +++ +TV I LT KE+ +++ R+ L + + + + Sbjct: 121 QSDYKSSVIHIADLKMDIAKRTVYRGNTNIKLTAKEFALLQFFLERQGEVLPRTVIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +IDV I +LR K+ + K I TV G GY L Sbjct: 181 WDINFDSDTNVIDVAIRRLRIKIDDGFDTK-LIHTVRGMGYRL 222 >gi|209515806|ref|ZP_03264669.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209503833|gb|EEA03826.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 228 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LLIEDD+ +A I+ L+ F V D+ DGI + + +ILDLGL I Sbjct: 1 MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L R + TPV IL+ + D+V+GL SGADDY+ KPF EL ARIRA++R Sbjct: 58 DGMTLLSRFRQSNRHTPVIILTARDELNDRVQGLNSGADDYLLKPFEPAELEARIRAVMR 117 Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RS H + + G + ++ + + + L+ +E+ ++E+L LR ++K Sbjct: 118 RSGPHGDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +HL + I+V++ ++RKKL N + I TV G GY+L+E Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLENC---RVEIVTVRGFGYLLQE 223 >gi|329116852|ref|ZP_08245569.1| putative sensory transduction protein RegX3 [Streptococcus parauberis NCFD 2020] gi|326907257|gb|EGE54171.1| putative sensory transduction protein RegX3 [Streptococcus parauberis NCFD 2020] Length = 220 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 123/219 (56%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL++ED++ +A+ ++ L+ EN+ V + GE I L + Y IILD+ L ++ GF Sbjct: 2 LDILIVEDNQEIANILQEFLRKENYTVATAESGEKAITLYQKYGAKLIILDIMLPEMDGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V +R + + + I S + D ++GL GADDYI KP++ + L+A+I I +R Sbjct: 62 QVCSKIRESS-NAHILIASAKNQKADNLKGLYLGADDYIGKPYDIDILLAKINGIFKRK- 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + Q + G L +N +T+ V H+++LT KE+++++LL + TL K+ ++ Sbjct: 120 -YNQEEFILGGLKLNTIMRTLTVNDHQVNLTEKEFELLKLLMENRGVTLKKDYLFTTIWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E++ + V I LR+K+ +I TVWG GY Sbjct: 179 SDSLSELQTLAVHIRWLREKIEKDPKNPEHIVTVWGIGY 217 >gi|170757250|ref|YP_001780246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122462|gb|ACA46298.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 227 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L++ED+ ++ + L+++ + V L +D + F+ D ++LD+ L D GF Sbjct: 3 FKVLVVEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFHPDLVLLDINLPDESGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R + K P+ +L+ + I DKV GL+ GADDYI+KPFN +E++ R++ +RR Sbjct: 63 ELCRHIN-DKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVN 121 Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + + + VNL+ + V + L +EY+++E +N ++E+ L Sbjct: 122 KYKEKSDEEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ E EV+ +DV + +LR KL + + I+T +G GYV+R Sbjct: 182 NKVWGFDYEGEVRTVDVHVRRLRSKL-DKENATSIIDTAFGIGYVMR 227 >gi|152965198|ref|YP_001360982.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151359715|gb|ABS02718.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 254 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 19/238 (7%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +++ED+ +A ++ L++E + V G G+ELC+ D ++LD+ L G EV Sbjct: 21 VVVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVC 80 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR----- 118 R ++ A+ PV +L+ DK+ GL GADDY++KPF+ ELVAR+ +VRR Sbjct: 81 RRVQAAR-PVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERAR 139 Query: 119 -------SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 A V+ G+L ++ + V G +HLT E+ ++ L+ T LT Sbjct: 140 ALVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLT 199 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +E L ++D D + +D + LR+KL G + + TV G GY E Sbjct: 200 REKLLEEVWDWADASGTRTVDSHVKALRRKL-----GADLVRTVHGVGYAFEPGGVQE 252 >gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 227 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED++ +A +EL L+ E + V GE+G+E +FD ++LD+ L + G E Sbjct: 5 QVLIIEDEEKIARFLELELEHEGYEVEAVYNGEEGLEAIIEGDFDLVLLDIMLPGLSGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ DKV GL GA DYI+KPF EEL+AR+R ++RR++ Sbjct: 65 ICRRVR-KESEIPIIMLTAKDDTTDKVMGLDLGAHDYITKPFAIEELLARMRGVLRRNKR 123 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A S++ +L +N + + V V + LT KEY ++ L K L++E + ++ Sbjct: 124 DAGMDSILRVKNLVLNQETREVRVNDEVVELTKKEYNLLLYLLKNKGIVLSREQIIEDVW 183 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 G D P + I+DV+I LR K+ + + YIETV G GYV++ Sbjct: 184 -GYDYPGDTNIVDVYIRYLRSKIDDEC-KETYIETVRGVGYVIK 225 >gi|300786954|ref|YP_003767245.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796468|gb|ADJ46843.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 223 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 9/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ +A + E + + + G + E DA ILD+ L D+ GF Sbjct: 1 MRLLIVEDEGYMAKLLGRGFAEEGYATDIAESGSQALVTAASMEHDAAILDVMLPDVDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ LR + PV +L+ S+ D+V+GL +GADDY+ KPF+ EL AR+RA+ RR+ Sbjct: 61 ELCARLRQSGWHVPVLMLTARDSVSDRVKGLDAGADDYLCKPFSFVELCARVRALTRRA- 119 Query: 121 GHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + + V G L ++ ++ V ++L+ E+ ++ELL ++ LT+ L+ Sbjct: 120 GIGRDVAVRLQAGSLRLDPLSRRVWSGPSEVYLSATEFTLLELLMHHQDQVLTRSRILDQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ R ++D ++ LR K+ G++ IETV G GY LR Sbjct: 180 VWGYRYPVTSNVVDQYVRYLRHKV-----GQDLIETVRGVGYRLR 219 >gi|167724100|ref|ZP_02407336.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] Length = 219 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 118/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L ++ ++ + +D I+LDL L D G Sbjct: 1 MRVLLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLILLDLLLPDGRGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR LR + PV IL+ + + +++ GL +GADDY+ KPF+ EL AR+ A+ RR Sbjct: 61 DFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ L+ G+L+V++ A++V G R+ LT E+ ++E L L+K LY Sbjct: 121 GNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DE I+V++ +LRKKL G IETV G GY LR + Sbjct: 181 FSDEVGSNTIEVYVSRLRKKL-----GAELIETVRGLGYRLRRD 219 >gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 249 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 130/237 (54%), Gaps = 13/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + L + + V G + +E + + D I+LD+ + + G + Sbjct: 6 KILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEKPDLIVLDVMMPRMNGLQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + LR P+ +L+ + + D+++GL+ GADDY+ KPF+ +EL +RI+AI+RR+ Sbjct: 66 VCQTLR-ESTGVPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRRTVP 124 Query: 120 ------RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 GHA Q ++ G L + + V + G RI LTG E+ +++LL + T+++ Sbjct: 125 GKGKAGAGHAAEQVIMEIGPLRIETHKRQVYLHGQRIQLTGIEFDVLKLLVSKAGQTVSR 184 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L + Y +++++DV + +LR K+ +++ YI T WG GY ++ K Sbjct: 185 SDILQQVWGYSANHYADLRVVDVNVSRLRSKIGDSSKQPEYIHTDWGIGYFFQKMRK 241 >gi|110802073|ref|YP_699510.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682574|gb|ABG85944.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 227 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED++++ + + + ENF V + GE+G+ + D ILD+ L + GF Sbjct: 1 MKILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR + + +L+ DK+ GLQ GADDY+ KPFN E+ R++A++RR Sbjct: 61 EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120 Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G I + ++L ++++ + I +T KE+ ++++ T++ LN Sbjct: 121 GINEEDNNDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180 Query: 177 HLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ D +P KI+DV I +LR K+ + YIETVWG GY Sbjct: 181 LVWGIDFFGDP--KIVDVNIRRLRSKIEENSSKPKYIETVWGTGY 223 >gi|229815822|ref|ZP_04446146.1| hypothetical protein COLINT_02870 [Collinsella intestinalis DSM 13280] gi|229808517|gb|EEP44295.1| hypothetical protein COLINT_02870 [Collinsella intestinalis DSM 13280] Length = 245 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 12/228 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIED LA ++ +L+ + V +G DG+ + +D ++LD+ L D+ G Sbjct: 16 MRVLLIEDTPRLAEAVAEILRKSGYGADVAHIGADGLAMALTGAYDVLLLDIMLPDMSGM 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR LR A PV +L+ + D+V GL +GADDY+ KPF+ EL+ARIRA+ RR Sbjct: 76 DVLRKLREAGSVVPVILLTARQGVGDRVAGLDAGADDYLPKPFHASELLARIRAVTRRPA 135 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + I L ++++ +V+ +G + LT KE ++E R + ++K Sbjct: 136 TYRPNNAIEACGLVLDVEKLSVQARGGAVAVELTPKEALLLEAFMGRSGSPVSKSDLAVR 195 Query: 178 LYDGRDEPEVKIID----VFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ P V ++D V + LR KL IETV G GY L Sbjct: 196 LWG----PHVSLVDNRIEVLVHALRGKLEKLE-SPARIETVRGVGYRL 238 >gi|206970362|ref|ZP_03231315.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206734939|gb|EDZ52108.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 220 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 9/224 (4%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGFEV 62 +I+++++ A I L E ++ L + +L YE +D IILD I G E+ Sbjct: 1 MIKNERSSAKKIVSGLTQEGH--FILKLHNENQDLNIAYEQDWDIIILDWDSLSISGPEI 58 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R+ K +TP+ I++ S ED + GLQ+GADDYI KPF KEELVAR++AI+RRS + Sbjct: 59 CRQIRLVK-TTPIIIVTNNISSEDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDYN 117 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + DL V+ + V+ G + LT +EY ++ L KNT L++EM LN ++ Sbjct: 118 QQNETNFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 177 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D++I +RKKL + YI+T+ GRGY + E Sbjct: 178 GYDVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 220 >gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] Length = 233 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 8/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E + V GE+G+EL D ++LDL L I G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELFTHGGIDLVLLDLMLPGIDGTT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDY++KP++ EL+ARIRA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQS 121 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + GD+ + + V V+G + KE++++E L K LT+ Sbjct: 122 AQQQGSADDDVPLTCGDIVMRVGQHQVIVRGESVFFPLKEFELLEYLMQNKGRVLTRHQL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ ++ + K +DV + ++R K+ Y+ TV G GY + E A Sbjct: 182 IDRIWGADYVGDTKTLDVHVKRVRAKIEEEPSHPKYLSTVRGLGYKIDEPA 232 >gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 237 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 129/227 (56%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ EN++V + GE ++ Y++D I+LDL + + G E Sbjct: 6 RILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKALDYDYDLIVLDLMMPGMDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 66 VCEKIRKQK-ATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAST 124 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + ++V L+++ DA V I LT KEY+++ L+ + +E Sbjct: 125 TAFLQTETSTKDVLVFPHLTIDNDAHRVTADDKHISLTPKEYELLHYLASAPDKVFAREQ 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219 L +++ +++ +D + +LR+KL+ + N I TVWG GY Sbjct: 185 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAGNMISTVWGVGY 231 >gi|260906859|ref|ZP_05915181.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 226 Score = 121 bits (304), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 119/218 (54%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++LKSE F + G+ + + D ++LDL L G E Sbjct: 4 RILVVDDDTALAEMIGIVLKSEGFEPFFCATGDQAFDEFQKVNPDLVLLDLMLPGKDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R S P+ +L+ S D V GL+SGADDY+ KPF +EL+AR+RA +R S Sbjct: 64 VCREIREIS-SVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELIARVRARLRISEP 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A L+ GD+ V++ TV G I LT E+ ++ L+ + ++E L ++ Sbjct: 123 QAPELLTVGDVVVDVAGHTVTKGGSPISLTPLEFDLLVALARKPWQVFSRETLLEEVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + I TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEKPDIIVTVRGVGY 220 >gi|260576068|ref|ZP_05844062.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] gi|259021767|gb|EEW25069.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] Length = 225 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MRILLIEDD + A + L N +V D+ G DG+ +D +++D + I Sbjct: 1 MRILLIEDDPSAADYVARGLSE---NGHVCDILADGTDGLFQATRESYDVLVVDRMIPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++RALR A TPV L+ + I+D+V GL++G DDY++KPF EL+AR+ A+ R Sbjct: 58 DGLSLVRALRAAGRKTPVLFLTALGGIDDRVEGLEAGGDDYLTKPFAFAELMARVNALAR 117 Query: 118 RSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R ++L+ DL ++L + G +I L KE+ ++E+L + +T+ M L Sbjct: 118 RPPVQEVKTLLRVADLELDLMRREARRAGQQIDLLPKEFTLLEVLMRNEGRVVTRTMLLE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D +P+ +++ I +LR K+ + TV GY Sbjct: 178 RVWDFHFDPKTSVVETHISRLRAKIDRPF-AVALLHTVKNMGY 219 >gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268] gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268] Length = 224 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 127/220 (57%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59 ++IL+++D++ + ++ LK +++ V + GE+ I+L K IILD+ + + G Sbjct: 4 IKILVVDDEERMQKLLKDFLKMKDYEVLLAGNGEEAIDLFFKEKSIALIILDVMMPKMDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + L+ +R PV +L+ S D+++G GAD+YISKPF+ + LVAR+ A++RRS Sbjct: 64 WTALKTIR-EHSKVPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRRS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L+ G + ++ A +V V G I L+ KEY++++ K L++E LN+++ Sbjct: 123 GVQKEELLEVGGIVIDEAAHSVTVDGKPIELSFKEYELLQYFVENKGIALSREKILNNVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + ID + KLR KL + YI+TVWG GY Sbjct: 183 NYDYFGDARTIDTHVKKLRAKLMDKG---EYIKTVWGMGY 219 >gi|226953701|ref|ZP_03824165.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244] gi|294651821|ref|ZP_06729115.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus ATCC 19194] gi|226835573|gb|EEH67956.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244] gi|292822285|gb|EFF81194.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus ATCC 19194] Length = 254 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 15/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 RIL+++DD L ++ L+ + F V D ++ + + F I+LD L Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGF---VVKTAHDATQMDRLLQRELFSLIVLDFMLPVED 78 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 79 GLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + ++ G +++L +T+ +G + LT E+ +++ L LT+ Sbjct: 139 QVREVPGAPSQQVEVVSFGPWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTR 198 Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +N L GR+ + + IDV + +LR+ + + YI+TVWG GYV Sbjct: 199 DKLMN-LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVF 248 >gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 133/223 (59%), Gaps = 11/223 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ +A I++ L++ ++ V G++ E Y+ D ++LD+ L I G + Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K ST P+ +L+ DKV L+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 VLKWIR--KDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYN 124 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + L+V++++ TV + I + KE++++ L+ KN T+E L + Sbjct: 125 VDNENKEALNFEQLTVDVNSYTVVYKNKEIKMPPKEFELLYYLAKNKNRVFTREQLLCEV 184 Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 + G D P + + +DV I +LR+KL GG N+ IETVWG GY Sbjct: 185 W-GYDYPGDSRTVDVHIKRLREKLE---GGPNWEIETVWGVGY 223 >gi|167909712|ref|ZP_02496803.1| DNA-binding response regulator [Burkholderia pseudomallei 112] Length = 246 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ + V G + FD +ILDLGL + G Sbjct: 4 MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S++++V+GL GADDY++KPF EL AR+RA+ RR Sbjct: 64 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGG 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ G LS + + + L+ +E ++E+L R ++KE ++HL + Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E I+V++ +LRKK+ + I TV G GY L + A Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 225 >gi|160892841|ref|ZP_02073630.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50] gi|156865400|gb|EDO58831.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50] Length = 226 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K + + L + V GE+ +E ++D I+LDL L + G Sbjct: 1 MRLLIVEDEKQICDMVAKSLYGVGYEVDTCYDGEEALECILTEDYDLIVLDLNLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR T V ILS I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR Sbjct: 61 EILRELRRENEETKVIILSARGQIADKVEGLDAGANDYMEKPFHIKELEARIRSLTRRKF 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +G +S + + +G ++ LT KE ++E L L +++E + H++D Sbjct: 121 VQKDVCLESGGISFDTIKREAYAKGKKVSLTRKENGILEYLLLNLGRPVSQEELMEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I V + LR+KL G + V G GY +RE A Sbjct: 181 ASVDSFSGAIRVHMSSLRRKLKAVLGYDPILNKV-GEGYKIREEA 224 >gi|298489232|ref|ZP_07007250.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156251|gb|EFH97353.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 224 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +ST V +L+ +E+KV+GL+ GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 EVLSRLR-KTVSTRVMMLTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220 >gi|154483122|ref|ZP_02025570.1| hypothetical protein EUBVEN_00823 [Eubacterium ventriosum ATCC 27560] gi|149735930|gb|EDM51816.1| hypothetical protein EUBVEN_00823 [Eubacterium ventriosum ATCC 27560] Length = 236 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 18/235 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIED+K +A +E +L+S ++ V G +G+ L K D I+LDLGL D+ G +V Sbjct: 6 ILLIEDEKNIADFVEKILRSNDYKVVTASTGGEGLSLIKSRCPDIILLDLGLPDMDGLDV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + ++R + P+ +LS ++ DKV L GADDYI+KPF+ EL+ARIR +R S Sbjct: 66 ISSVRSWSL-CPIIVLSARTTDNDKVSSLDLGADDYITKPFSTNELLARIRTSLRHS--- 121 Query: 123 AQSLIVTGD-----------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + +VT D L ++ + + G IHLT EY+++ ++ +T Sbjct: 122 --NRVVTNDSVSEKPYAALGLKIDFMKRIITRDGEPIHLTPVEYKIVAYIAKNSGKVITY 179 Query: 172 EMFLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L +++ DE + KI+ V + +R+K+ YI T G GY + E++ Sbjct: 180 SSILKNVWGPNMDENDNKILRVNMANIRRKIEPNPAEPTYILTELGVGYRMLEDS 234 >gi|148652516|ref|YP_001279609.1| two component heavy metal response transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571600|gb|ABQ93659.1| two component heavy metal response transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 244 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+K L I+ L F V G DG +F +++D+ L D+ GF Sbjct: 1 MKVLLVEDEKNLGEYIKKGLTEAGFIVDHHMTGLDGYHALMTEDFSVVVMDVMLPDVSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ R A TPV L+ + D+++G++ G DDY++KPF EL+ RI++++RR+ Sbjct: 61 ELIQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S+I DL +++ +TV I LT KE+ +++L R+ L + + + + Sbjct: 121 QSDYKSSVIHMADLKMDIAKRTVYRGDTNIKLTAKEFALLQLFLERQGEVLPRTVIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +IDV I +LR K+ + K I TV G GY L Sbjct: 181 WDINFDSDTNVIDVAIRRLRIKIDDGFDIK-LIHTVRGMGYKL 222 >gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 223 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 119 KKKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|300854564|ref|YP_003779548.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434679|gb|ADK14446.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 238 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILLI+D+ L +E +LK E F ++ G +GI+LCK + D ++LD+ + D+ GF Sbjct: 9 KILLIDDEVELLKLLETVLKKEGFRRIFKAKNGTEGIKLCKTEKPDIVVLDIMMPDMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R PV LS S DK+ L GADDY++KPF+ +E+ RI+A +RR+ Sbjct: 69 EVCKNIRNFSF-VPVIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 127 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I GD+ ++L+ V + LT KEY ++ ++ N LTK+M Sbjct: 128 YIKNEISMKKEKISFGDIIIDLEKGEVSKSDKNVVLTPKEYHLLCYMAQNANQILTKQMI 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +++ E I V I KLR+KL + YI T G GY L+ Sbjct: 188 CDEVWNDNYEGYDNTIMVHIRKLRQKLEDNPSSPKYIVTAKGLGYKLK 235 >gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122] gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122] Length = 239 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+KA+ ++ L+ EN+ V G+D ++ + FD ++LDL L +PG Sbjct: 8 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALDEFGKHHFDLVVLDLMLPRVPGER 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA++RR Sbjct: 68 VCRVIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 126 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 ++ ++ G+L++++ V V + LT E++++ LS ++ E Sbjct: 127 DSEPQREVLEFGELTIDVSGHKVLVNDKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L + ++G + + ID + LR K+ + ++ TV G GY + K + + Sbjct: 187 LGYDFEGYE----RTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTKQPSQQ 239 >gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC 10379] gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC 10379] Length = 234 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A+ +E LK E ++V V + GE +EL D I+LDL L G E Sbjct: 5 KILVVDDEEPIANILEFNLKKEGYDVIVANDGEKAVELAFNDNPDLILLDLMLPKKDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK + P+ +L+ +S DKV GL+ GADDY++KPF+ EL+AR++ +RR Sbjct: 65 VCREVR-AKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + +V D+ + +A ++ G I LT +E+ + L+ + LT+E Sbjct: 124 QQEEVAEEKNGGDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ +V+ +DV + +LR+K+ + + YI T G GY + E Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGYFIGE 233 >gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] Length = 230 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA + L E + V V GE+ + + D +ILD L + G EV Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERGPDLVILDWMLPKVSGIEV 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + P+ +L+ D++RGL +GADDY+ KPF+ EL AR+RA++RR R Sbjct: 65 CRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIR 124 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A I GD+ ++ A V+ G IHL E+++++ L ++E L+ ++ Sbjct: 125 PGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I +LRK+L N + I TV GY L +A Sbjct: 185 GSDVYVEARTVDVHIGRLRKEL-NGTTDADPIRTVRSAGYSLDMDA 229 >gi|191170729|ref|ZP_03032281.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Escherichia coli F11] gi|300974717|ref|ZP_07172706.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300981340|ref|ZP_07175476.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301050614|ref|ZP_07197482.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|190908953|gb|EDV68540.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Escherichia coli F11] gi|300297680|gb|EFJ54065.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300308850|gb|EFJ63370.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300409000|gb|EFJ92538.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|307629398|gb|ADN73702.1| DNA-binding response regulator [Escherichia coli UM146] gi|324010967|gb|EGB80186.1| response regulator receiver domain protein [Escherichia coli MS 60-1] Length = 239 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 6 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 66 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125 Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++++ G L +N ++ V + ++ LT +E+ ++ + ++ L Sbjct: 126 MGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + E ++ I +LR K+ A I+TVWG+GY Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 229 >gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 250 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 4/232 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ + L + F+V G + + ++LDLGL D+ GFE Sbjct: 3 KILVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAQCHPEVVLLDLGLPDMDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL LR PV +LS + +KV L +GADDY++KPF +EL+AR+RA VRR Sbjct: 63 VLAGLR-GWTKIPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRRGAN 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ + ++ V+L AK V +HLT E+ ++ELL + ++++ L+ + Sbjct: 122 NQPGGEPVVAADSFVVDLVAKKVTKDDKEVHLTPTEWGVLELLVRNQGKLVSQKEILSEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 + + E + V++ +LR+KL ++ T G GY +AK Sbjct: 182 WGPSYKTETHYLRVYLAQLRRKLEADPANPRHLLTEAGMGYRFEPSAKQRPA 233 >gi|288555474|ref|YP_003427409.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288546634|gb|ADC50517.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 246 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD+ ++ + L E + V + GEDG+ +++DL L + GFEV Sbjct: 16 ILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDGFEV 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ ++S S DK+ L GADDYI+KPF+ ELVAR+++ +RR + Sbjct: 76 CRQVR-QQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYHRY 134 Query: 123 ----AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q +++ D L++N + + VE G + LT KE++++ L+ +KE N Sbjct: 135 NGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLYNR 194 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ D +++ + V I +R+KL + + +I+TVWG GY Sbjct: 195 VWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGY 236 >gi|257056405|ref|YP_003134237.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586277|gb|ACU97410.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 231 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 120/219 (54%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA ++ L+ E V V G++G E +D ++LD L + G Sbjct: 1 MRVLVVEDEAPLAEAVARGLRREGMAVDVAFTGDEGHEKATVTRYDVVVLDRDLPGMSGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R + + T V +L+ ++ D+V GL GADDY++KPF ELVAR+RA+ RR+ Sbjct: 61 DLCREIVNSDELTRVLMLTASGTVSDRVEGLSLGADDYLAKPFAFPELVARVRALGRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++V GD++++ +TV + LT KE+ ++E+L K ++ E L ++D Sbjct: 121 PATPPVLVAGDVTLDPAKRTVHRGERLVELTRKEFGVLEVLLSAKGAVVSSEELLERVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P + V + LRKKL G IETV G GY Sbjct: 181 ENADPFTTTVRVTVMTLRKKL----GEPGIIETVVGSGY 215 >gi|239628736|ref|ZP_04671767.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239518882|gb|EEQ58748.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 229 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 12/224 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDDK + + +++ LK+ ++ + D G GI L D I+LDLGL DI G EV Sbjct: 6 ILVIEDDKTIQNFMKISLKTRGYSYILADNGLSGISLFYANHPDLILLDLGLPDIDGMEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R + +TPV ++S +K+ L GADDY++KPF+ EEL+ARIR +R H Sbjct: 66 LKQIR-QQSNTPVIVVSARGQEREKINALDQGADDYVTKPFSAEELLARIRVGLR----H 120 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + D LD + + V IHLT EY+M+ LL LT Sbjct: 121 KNSFVSRQDQEFELDYFRMDFEKRKIFVHDQEIHLTPLEYKMMVLLVNNSGKVLTHHYIQ 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + + VF+ +R+K+ + +I T G GY Sbjct: 181 QEVWGYDTTDDYQSLRVFMANIRRKIEDNTANPRFILTEVGVGY 224 >gi|168177977|ref|ZP_02612641.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670984|gb|EDT82958.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 227 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L++ED+ ++ + L+++ + V L +D + F+ D ++LD+ L D GF Sbjct: 3 FKVLVVEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFHPDLVLLDINLPDESGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+ R + K P+ +L+ + I DKV GL+ GADDYI+KPFN +E++ R++ +RR Sbjct: 63 ELCRHIN-DKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVS 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + + + VNL+ + V + L +EY+++E +N ++E+ L Sbjct: 122 KYKEKSDEEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ E EV+ +DV + +LR KL + + I+T +G GYV+R Sbjct: 182 NKVWGFDYEGEVRTVDVHVRRLRSKL-DKENSASIIDTAFGIGYVMR 227 >gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BGSC 6E1] gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BGSC 6E1] Length = 227 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++L L+ E + + G + +E + +D I+LD+ L +I G E Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMENFENGNWDLILLDVMLPNISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR +R+ P+ +L+ S+ DKV GL GA DYI+KPF EEL+ARIRA +R S Sbjct: 64 VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + S DL LD KT EV+ I LT +E+ ++ L +N L +E + Sbjct: 124 VKEEENSSYQIADLY--LDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVT 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + ++DV+I LRKK+ + I TV G GYVL+ Sbjct: 182 NVWGFDYYGDTNVVDVYIRYLRKKV-DCNVDVPLIHTVRGVGYVLK 226 >gi|160881990|ref|YP_001560958.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430656|gb|ABX44219.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 15/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ A+A + L+ F V + + G+ G+ ++ IILDL L ++ GFE Sbjct: 3 KILIVEDEAAIAELEKDYLELSGFEVDIENTGDKGLAAALTGDYKLIILDLMLPNVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + PV ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKRVREEK-NIPVIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARY-- 119 Query: 122 HAQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + LI TG + ++ A+ V V G T KE+ ++ L+ N TK Sbjct: 120 --ERLIGTGMKENEMIEIRGIKIDKTARRVYVNGEERAFTTKEFDLLTFLAQNPNHVYTK 177 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 178 EELFQEIWDMESIGDIATVTVHIKKIREKIEANTSKPQYIETIWGVGYRFK 228 >gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601] gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601] Length = 237 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 128/229 (55%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ ++L + + D I+LD+ L G E Sbjct: 5 KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALQLVEEVQPDLILLDIMLPGRDGVE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R K P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVR-KKYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + S + G L+++ DA V +G I LT +E++++ L+ +T+E Sbjct: 124 VSSQAAEDQENSELEVGSLTIHPDAYVVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLR 232 >gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 248 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + L+ F V G + E D ++LD+ L D+ GF Sbjct: 15 RLLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEEPDLVVLDVMLPDMDGFT 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR ++TP+ L+ + DKV+GL G DDY++KPF EE+VARIRAI+RR+ Sbjct: 75 VARRLRERDVTTPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRT-- 132 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 HA ++ DL ++ DA V G + L+ E++++ L L ++K L+ Sbjct: 133 HATQDENDGIVRVADLVLDEDAHEVHRAGVEVDLSPTEFKLLRYLMLNAGRVVSKAQILD 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSN--AAGGKNY---IETVWGRGYVLRE 223 H+++ + I++ +I LR+K+ A G+ I+T G GY+LRE Sbjct: 193 HVWEYDWNGDAAIVESYISYLRRKIDQIETADGQPVAPLIQTRRGVGYMLRE 244 >gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42] gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42] Length = 227 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ ++ E+ E F G +G + ++D +ILD+ L + G Sbjct: 1 MKILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R S P+ +L+ + D+V G + GADDY++KPF+ LVARI+A++RR R Sbjct: 61 TICRKIRETS-SVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYR 119 Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ LI T S+N + V + G + +LT KE+ ++ L+ ++E Sbjct: 120 ATGQAVKSDDLIETACFSINKKTREVFLHGKPVENLTPKEFDLLFYLAQNPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + + + +DV I +LRKKLS+ K ++ TVWG GY E+ Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLSSEE--KPFLYTVWGVGYKFDED 227 >gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 237 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/239 (33%), Positives = 132/239 (55%), Gaps = 16/239 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E + V GE+ ++ + D I+LD+ L G E Sbjct: 4 RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR--- 119 Query: 122 HAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 HAQ+ IV G L + DA V+ +G I LT +E++++ L+ +T Sbjct: 120 HAQTATQEEEESETNEIVVGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMT 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +E L ++ +V+ +DV + +LR+K+ + ++I T G GY LR N + E+ Sbjct: 180 REHLLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLR-NPEQES 237 >gi|91213879|ref|YP_543865.1| putative response regulator [Escherichia coli UTI89] gi|91075453|gb|ABE10334.1| putative response regulator [Escherichia coli UTI89] Length = 240 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 7 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 67 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 126 Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++++ G L +N ++ V + ++ LT +E+ ++ + ++ L Sbjct: 127 MGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + E ++ I +LR K+ A I+TVWG+GY Sbjct: 187 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 230 >gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 233 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 128/232 (55%), Gaps = 7/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E ++V GE+ + + + D I+LDL L I G E Sbjct: 3 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALAQVEEEKPDLILLDLMLPKIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VARQVR-AKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q + I G L +N D+ +V G ++ LT +E++++ L+ +T+E L Sbjct: 122 LQQDDETVKNNIKIGPLVINSDSYSVTRDGMQLDLTHREFELLHYLAQHTGQVMTREHLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ +V+ +DV + +LR+K+ G + T G GY LR D Sbjct: 182 QTVWGYDYFGDVRTVDVTVRRLREKIEETPGNPQILVTRRGVGYYLRNPEND 233 >gi|239502003|ref|ZP_04661313.1| osmolarity response regulator [Acinetobacter baumannii AB900] Length = 254 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V L + F I+LD L G Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R LR I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 82 ICRRLRQTNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G S++L +T+ +G + LT E+ +++ L LT++ Sbjct: 142 EVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQIVTLTTGEFAVLKALVQHPREPLTRDKL 201 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +N L GR+ + + IDV + +LR+ + + YI+TVWG GYV Sbjct: 202 MN-LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVF 248 >gi|229826994|ref|ZP_04453063.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC 49176] gi|229788612|gb|EEP24726.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC 49176] Length = 245 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 20/235 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ ++ I L L E F+ + G+ I L + Y+ D I+LD+ L G++ Sbjct: 6 KILIVDDDEDISELISLYLVKECFDTKRAEDGDVAIRLFQEYQPDLILLDIMLPGKDGYD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +LS I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 66 VCREIRKTS-KVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRFSS 124 Query: 119 ----SRGHAQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164 + + IV G DL +NL +V R+ + KE ++ L+ Sbjct: 125 DEGVDKSAENTTIVEGTSNINRVIYADLEINLTNYSVTYNNKRVDMPPKELELFYFLASH 184 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 N T+E L+ ++ + + +DV + +LR+K+++ A + + TVWG GY Sbjct: 185 PNQVFTREQLLDRIWGYEYIGDTRTVDVHVKRLRQKINDHAEWR--LSTVWGVGY 237 >gi|34498090|ref|NP_902305.1| two-component response regulator [Chromobacterium violaceum ATCC 12472] gi|34103945|gb|AAQ60305.1| probable two-component response regulator [Chromobacterium violaceum ATCC 12472] Length = 221 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ +A I L++ V D +IL+LGL D G Sbjct: 1 MRVLLVEDNRLIAQGIVTGLRANGCIVDAVGSAAQADLALATLNVDVMILNLGLPDENGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR + P+ +L+ S+ED+V L++GADDY+ KPF+ +ELVAR+ A+ RR Sbjct: 61 SLLRRLRTRGVRVPILVLTARDSVEDRVAALRAGADDYLLKPFDLDELVARLHALTRRMA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I G L ++ V + + LT +E ++ L L+ + + LYD Sbjct: 121 GRSVDVIEDGRLRLDPARGEVWLDESPVALTRREMALLMALLRADGRILSPDQLKDRLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E E ++V IC LR+KL G N ++TV G GY Sbjct: 181 YSEEIESNALNVHICHLRRKL-----GPNVVKTVRGLGY 214 >gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L] gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L] gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 233 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKIREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus NA1000] gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus NA1000] Length = 230 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA + L E + V V GE+ + + D +ILD L + G EV Sbjct: 5 VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERAPDLVILDWMLPKVSGIEV 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + P+ +L+ D++RGL +GADDY+ KPF+ EL AR+RA++RR R Sbjct: 65 CRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIR 124 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A I GD+ ++ A V+ G IHL E+++++ L ++E L+ ++ Sbjct: 125 PGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I +LRK L N + I TV GY L +A Sbjct: 185 GSDVYVEARTVDVHIGRLRKAL-NGTTDADPIRTVRSAGYSLDMDA 229 >gi|328463725|gb|EGF35301.1| two-component response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 224 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 121/219 (55%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++EDD+ I +L+ + V + EL + +FD ++ D+ + + G+ Sbjct: 2 VKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYELLQSEQFDLVLSDIMMPQVDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR S P+ ++ I K +G SG DDY+ KP N EL+ RI+A++RR++ Sbjct: 62 QFAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRAK 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +L++ G+L++N +A T +V + +T +E+Q++ L + ++ +N +D Sbjct: 122 ITADNLLIVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFWD 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ +DV+I KLR+K A G I+T+ G GY Sbjct: 182 LASDTSMRAVDVYITKLREKFKAADGFT--IKTIHGLGY 218 >gi|282882277|ref|ZP_06290909.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis 315-B] gi|281297871|gb|EFA90335.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis 315-B] Length = 233 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 131/228 (57%), Gaps = 13/228 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 ++IL+++D++A+A I+ + E + V D+ +DG+E F + + I+LD+ + + Sbjct: 3 IKILVVDDEQAIADIIKFNFEREGYGV---DIAKDGLEALNFVKDNTYSLILLDIMMPKL 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF+ L+ +R + TPV +L+ DKV GL+ GADDY+ KPF+ EL+AR++A++R Sbjct: 60 NGFDTLKEIRKSH-KTPVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVLR 118 Query: 118 R------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R G +I G+L ++++ V+ G I LT +E+++++ LS ++ Sbjct: 119 RFGPPTEEEGSEDEIITVGELEIDINKYEVKKNGKIIDLTLREFELLKFLSSNPGVVFSR 178 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L +++ +++ +DV I +LR+K+ + + YI T G GY Sbjct: 179 EELLEKVWEYEYYGDIRTVDVTIRRLREKVEDTSKDYKYILTKRGVGY 226 >gi|221308070|ref|ZP_03589917.1| hypothetical protein Bsubs1_01408 [Bacillus subtilis subsp. subtilis str. 168] gi|221312393|ref|ZP_03594198.1| hypothetical protein BsubsN3_01411 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317326|ref|ZP_03598620.1| hypothetical protein BsubsJ_01413 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321590|ref|ZP_03602884.1| hypothetical protein BsubsS_01434 [Bacillus subtilis subsp. subtilis str. SMY] gi|255767066|ref|NP_388137.2| two-component response regulator YcbM [Bacillus subtilis subsp. subtilis str. 168] gi|238054356|sp|P42244|YCBL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein ycbL gi|225184693|emb|CAB12049.2| two-component response regulator [YcbM] [Bacillus subtilis subsp. subtilis str. 168] Length = 226 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +L+EDD +++ ++ L E F + GE+GI L + +D ++LD+ L + G + L Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + +R K + PV ++S DK GL GADDYI+KPF+ EL AR++A +RR+ ++ Sbjct: 61 KIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119 Query: 124 ------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +I L++++D +V G + LT E+Q++ L + TKE Sbjct: 120 AEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRS 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 180 VWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 225 >gi|110799909|ref|YP_694689.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168206598|ref|ZP_02632603.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168210569|ref|ZP_02636194.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168217561|ref|ZP_02643186.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182625212|ref|ZP_02952987.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674556|gb|ABG83543.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170661960|gb|EDT14643.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170711371|gb|EDT23553.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177909524|gb|EDT71964.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182380359|gb|EDT77838.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 223 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ I++ L+ E + D +EL + D IILD L DI GF Sbjct: 1 MKILVVDDEVSILQLIKMNLEIEGHVPITAENALDALELVIKEKPDIIILDAMLPDISGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116 ++ ++ P+ +L+ S I DK+ GLQ GADDYI+KPFN EL+ RI + I Sbjct: 61 NLIPKIKNID-DIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHIS 119 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + L V GDL++ LD + ++ I+LT KE++++ L KN ++E LN Sbjct: 120 SDSKKKVKDLTV-GDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLN 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + +D+ I +LRKKL +NYI+T++ GY L E Sbjct: 179 KVWGYDFEGTTRAVDILIQRLRKKLGPC---QNYIKTLYKAGYKLDE 222 >gi|307731193|ref|YP_003908417.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585728|gb|ADN59126.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 247 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + + L+ F V + G + ++LD+ + ++ G Sbjct: 5 ILVVDDDPVVRNLVSQYLEGRGFKVATLEHGMALQSKLRDERPALVVLDIMMPELDGISA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LRALRVA PV +L+ + D+V GL+ GADDY+ KPF ELVARIR ++RR Sbjct: 65 LRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRRGSI 124 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S ++ G VN A+ + G RI L E+ M+++ T LT+ L Sbjct: 125 APSAPEQRAPYRFGRFEVNFPARELRRDGERIALRSSEFAMLKVFVTHAMTVLTRAQLLE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ + + +DV I +LR+ + Y++TVWGRGYV Sbjct: 185 KLHGNSEAHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229 >gi|323527869|ref|YP_004230022.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384871|gb|ADX56962.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 228 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LLIEDD+ +A I+ L+ F V D+ DGI + + +ILDLGL I Sbjct: 1 MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L R + TPV IL+ + D+V+GL SGADDY+ KPF EL ARIRA++R Sbjct: 58 DGMTLLSRFRQSNRHTPVIILTARDELNDRVQGLNSGADDYMLKPFEPTELEARIRAVMR 117 Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RS H + + G + ++ + + + L+ +E+ ++E+L LR ++K Sbjct: 118 RSGPHGDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +HL + I+V++ ++RKKL N + I TV G GY+L+E Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLENC---RVEIVTVRGFGYLLQE 223 >gi|219556445|ref|ZP_03535521.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis T17] Length = 289 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 105/206 (50%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ + + L E V G + ++DA++LD+ L I GF Sbjct: 1 MRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 61 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 121 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAG 206 E I+DV+I LR K+ G Sbjct: 181 AAYEARSNIVDVYIRYLRDKIDRPFG 206 >gi|153939783|ref|YP_001391249.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935679|gb|ABS41177.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319285|gb|ADF99662.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 229 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + ++ + + + V G + IE C + D I+LD+ + +I GF+ Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K+S P+ LS S DK++GL G DDYI KPF+ +EL AR++A +RR + Sbjct: 63 VCQKIR-DKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +S I G L+++++++ V + I T KE+ ++ELL+L +KE + Sbjct: 122 IPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + I K+R K N+I TVWG GY Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGY 222 >gi|94480746|emb|CAK02710.1| putative response regulator [Escherichia coli] Length = 239 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 6 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 66 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125 Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++++ G L +N ++ V + ++ LT +E+ ++ + ++ L Sbjct: 126 MGQNILLAGRLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + E ++ I +LR K+ A I+TVWG+GY Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 229 >gi|85713829|ref|ZP_01044819.1| two component transcriptional regulatory protein, winged-helix family protein [Nitrobacter sp. Nb-311A] gi|85699733|gb|EAQ37600.1| two component transcriptional regulatory protein, winged-helix family protein [Nitrobacter sp. Nb-311A] Length = 224 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 1/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED + LA + L++ + + + D + A+ILDLGL D G Sbjct: 1 MRVLIVEDSEELADLLAKGLQAAGYEIDLLTNVADAFSALGTTRYAALILDLGLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR K PV +L+ +ED+V GL+SGADDY+ KPF+ +ELVAR+ A++RR Sbjct: 61 SILRELRHRKDPLPVLVLTARGGVEDRVSGLRSGADDYLVKPFSFDELVARLEALLRRPG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + +++ + + + V +L+ +E ++ELL RK ++K++ + ++ Sbjct: 121 QLLGSSLKLANVTFDSEGRQAFVDMKPQNLSAREIAVLELLLRRKGNVVSKKLLEDQIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++V++ +LRK+L + G K I T+ G GYV+ E+ Sbjct: 181 LTGDVASNAVEVYVHRLRKQLLD-IGAKVKISTIRGVGYVMMES 223 >gi|330896968|gb|EGH28534.1| two component transcriptional regulator [Pseudomonas syringae pv. japonica str. M301072PT] gi|330977797|gb|EGH77700.1| two component transcriptional regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 227 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 118/230 (51%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD+ +A I L ++ N+ + +FD +ILDLGL D G Sbjct: 1 MHVLLCEDDELIASGIVAGLHAQGLNLDRVGSASAAHAILDAAQFDVMILDLGLPDEDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR+LR + PV IL+ ++D+V+GL +GADDY+ KPF+ EL AR+ +VRR Sbjct: 61 SLLRSLRSRGHNIPVLILTARDDVDDRVKGLHAGADDYMVKPFDLRELFARLHTLVRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G L+ + + + G I L+ +E ++ L L+ E + +Y Sbjct: 121 GRTVNHIEHGILTYDPSTRETWLSGTAIDLSRREQAVLLALLNNPGRVLSLEQLKDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 DE E ++V I LR+KL G IETV G GY L + ++C Sbjct: 181 FTDEVESNALNVHIFHLRRKL-----GGQIIETVRGSGYRLGVASSLQSC 225 >gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 234 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ A+ + LK N+ V D G D ++ + D +I+DL L + G Sbjct: 3 MTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLDGV 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E + +R P+ +L+ SS DK+ GL+ GADDY++KPF+ +EL++RI+AI+RR+ Sbjct: 63 EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L VTG ++++ TV+ G + LT E+++++ L N L+++ Sbjct: 123 RVVDLKKIVPELPVTG-VTIDFKRLTVQKNGQPVALTPNEFRLLKFLFQNSNQVLSRDQI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ + +I+D+ I LR KL + I+T+ G GY Sbjct: 182 LEQVWGYEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGY 226 >gi|300088634|ref|YP_003759156.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528367|gb|ADJ26835.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 223 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLI+DD+ L + V G DG FD IILD+ L D GF Sbjct: 1 MKILLIDDDEQLCATFSRAAGEAGHVVECVYTGGDGETFAGNTPFDLIILDIMLPDKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR A ++TP+ +L+ + ++K +GL +GADDY++KPF EL ARI A+ RR R Sbjct: 61 SVCQDLRKAGVTTPILMLTARGTAQEKAQGLNTGADDYLAKPFEYNELFARICALGRRPR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK---EMFLNH 177 A +I +++++ A V ++G + LT E++++EL + N + + E +++ Sbjct: 121 QMAPLVIEIDGITIDITAHRVSLKGETVELTANEFRVLELFANNPNVIIERVRIEEYIST 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVL 221 +D + + ++DV I +LR+KL + G I+TV G GY L Sbjct: 181 THD--KDFKSNVVDVIIKRLREKLGWDPQTGP--IQTVRGCGYRL 221 >gi|295678163|ref|YP_003606687.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295438006|gb|ADG17176.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 228 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LLIEDD+ +A I+ L+ F V D+ DGI + + +ILDLGL I Sbjct: 1 MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L R + TPV IL+ + D+V+GL SGADDY+ KPF EL ARIRA++R Sbjct: 58 DGMTLLSRFRQSNRHTPVIILTARDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMR 117 Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RS H + + G + ++ + + + L+ +E+ ++E+L LR ++K Sbjct: 118 RSGPHGDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +HL + I+V++ ++RKKL N + I TV G GY+L+E Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLENC---RVEIVTVRGFGYLLQE 223 >gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri] gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112] Length = 235 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 129/227 (56%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E + V V GE +E + D IILDL L I G E Sbjct: 4 KILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R AK + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAKRVR-AKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + I GDL+++ +A TV +G I+LT +E++++ L+ + +E Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +V+ +DV + +LR+K+ + ++ T G GY L Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229 >gi|228905009|ref|ZP_04069054.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228854640|gb|EEM99253.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 233 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R +K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGDEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 242 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD +A + + L+ E + + G G+ + +DA++LDL L + G E Sbjct: 6 RVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHTGLRELERGHWDALVLDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS ++ GL+ GADDY++KPF+ ELVAR++A++RR+ Sbjct: 66 ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRTDA 125 Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ + G+L ++ A+ V V I LT +E+ ++ + ++ L Sbjct: 126 LARNARLESGSLTLGNLDIDPVAREVRVDARLIELTPREFDLLYFFARHPGKVFSRLDLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 N ++ + + ++ I +LR K+ I TVWGRGY L E Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRTKVEADPAEPRRILTVWGRGYKLSPTGAGE 238 >gi|163858929|ref|YP_001633227.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163262657|emb|CAP44960.1| two-component response regulator [Bordetella petrii] Length = 232 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+IED++ LA ++ L N+ V + G G+ L + ++D I+LD+ L GF Sbjct: 4 LKILVIEDERKLAEYLKRALSEHNYVVDIAMDGISGLHLAQETQYDLILLDVMLPGRDGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR P+ +L+ +ED+VRGLQ GADDY++KPF EL+AR+ A+ RR Sbjct: 64 SVLAELRKGD-RVPILMLTARDKLEDRVRGLQDGADDYLAKPFALSELLARVLALSRRQS 122 Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+++ GDL ++L + G R+ LT KE+ ++ LL ++ L++ Sbjct: 123 NSVIEPNRQNVLKVGDLELDLLRRRASRGGVRLDLTAKEFTLLALLMKKQGQVLSRLDLA 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D +++V + +LR K+ + K + TV G GYVL Sbjct: 183 EQVWDINFNSNTNVVEVAVRRLRGKVDDPFPTK-LLHTVRGMGYVL 227 >gi|261381187|ref|ZP_05985760.1| QseB protein [Neisseria subflava NJ9703] gi|284795806|gb|EFC51153.1| QseB protein [Neisseria subflava NJ9703] Length = 225 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A ++ LK + V LG + +D ++LDLGL G Sbjct: 1 MRVLLVEDDAMIAQAVSANLKDTGYAVDWVSLGSEVASAVAAQAYDLLLLDLGLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + PV I++ + ++ GL GADDYI KPF+ EL AR+RA++RR Sbjct: 61 DVLAQIRNGGCTVPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRRHG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G AQ+L+ G + +N EV G I L+ KE+ +++ L LR L++ + + Sbjct: 121 GQAQTLLTNGIIMLNPSTHQAEVVGQEQAIMLSNKEFAVLQALLLRPGMILSRSDLEDKI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 Y +E E +D I LRKKL GK I+ V G G+++ +N Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKEAIQNVRGVGWLVPQN 221 >gi|168214081|ref|ZP_02639706.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170714439|gb|EDT26621.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 223 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ I++ L+ E + D +EL + D IILD L DI GF Sbjct: 1 MKILVVDDEISILQLIKMNLEIEGHVPITAENALDALELVIKEKPDIIILDAMLPDISGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116 ++ ++ P+ +L+ S I DK+ GLQ GADDYI+KPFN EL+ RI + I Sbjct: 61 NLIPKIKNID-DIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHIS 119 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + L V GDL++ LD + ++ I+LT KE++++ L KN ++E LN Sbjct: 120 SDSKKKVKDLTV-GDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLN 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + +D+ I +LRKKL +NYI+T++ GY L E Sbjct: 179 KVWGYDFEGTTRAVDILIQRLRKKLGPC---QNYIKTLYKAGYKLDE 222 >gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 227 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++L L+ E + + G + +E ++ I+LD+ L +I G E Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVMLPNISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR +R+ P+ +L+ S+ DKV GL GA DYI+KPF EEL+ARIRA +R S Sbjct: 64 VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + S DL LD KT EV+ H + LT +E+ ++ L +N L +E + Sbjct: 124 IKEEENSSYQIADLY--LDEKTREVKRGNHFVELTPREFDLLLFLMKHENQVLNREQIVT 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + ++DV+I LR+K+ + I TV G GYVL+ Sbjct: 182 NVWGFDYYGDTNVVDVYIRYLRRKI-DCNVDVPLIHTVRGVGYVLK 226 >gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820] gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 223 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 119 KKTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] Length = 234 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+K + + L E + G+ G++L + D ++LDL L + GF+ Sbjct: 4 RILIVEDEKNIVDILSFNLGREGYETLEAYDGQSGLQLALEQDPDLVLLDLMLPKMNGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R++R +TPV +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VCRSIRAEGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANIRRREM 123 Query: 121 -GHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G+A + V G +SV+ D G + LT +EY+++ L+ R ++E Sbjct: 124 AGNAPAAPVGSNRLEAGRISVDQDLMVAYKDGKALDLTQREYELLRFLAARPGKVFSREA 183 Query: 174 FLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ Y+G +V+ +DV + +LR+K+ + I T G+GY+L Sbjct: 184 LMENVWNYEGY-VGDVRAVDVAVRRLREKVEDDPAQPQIIVTRRGQGYLL 232 >gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 223 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 10/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + L K+ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREA--LAKWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 119 KKAEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +D+ + +LRKKL N+ YI+T++G GY Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGY 219 >gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 227 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A L+ F+ + GE+G+ L K E+ I+LDL L I GF+ Sbjct: 3 RILIIEDETDIAELERDYLEVSGFDSDIASNGEEGLRLAKTNEYSLILLDLMLPGIDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R + P+ +++ DK+RG GADDYI KPFN ELVAR++A R Sbjct: 63 LCREMR-EFLDIPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAHTARYDR 121 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 SR + + L ++ D++ V G T KE+ ++ L+ + +KE Sbjct: 122 VISRQPEKREVRKRGLVMDADSRRVYADGEEKVFTAKEFDLLWFLASNPDRVFSKEHLFE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 RIWGYDSLGDITTVTVHIRKIREKIEKDPSSPEYIETIWGMGYRFK 227 >gi|148547607|ref|YP_001267709.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148511665|gb|ABQ78525.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 253 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 122/235 (51%), Gaps = 24/235 (10%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++DD+ L + L L E F D GE+G F ++LD+ L I G EV Sbjct: 24 VLLVDDDRELTEMLSLYLAREGFQAMAVDTGEEGETQALSGNFQVVVLDVMLPGISGIEV 83 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R A+ PV +L+ D++ GL+ GADDY+ KP + ELVAR+RAI+RR + H Sbjct: 84 LRRVR-ARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRRVKPH 142 Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE- 172 + +G L + + + LTG E+ ++E+L+ + ++K+ Sbjct: 143 LMGDTSAPEVPEQVRSGALKMWPGRREARWGTATLELTGSEFSLLEVLARQAGQLVSKQD 202 Query: 173 MFLNHL------YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + LN L YD R IDV + +R+KL A G ++I++V G GY+L Sbjct: 203 LSLNALGRPLTRYDRR-------IDVHVSSIRQKLGPRADGSSWIQSVRGMGYML 250 >gi|114565051|ref|YP_752565.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114336344|gb|ABI73726.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 225 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 129/229 (56%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDDK + +++ LK + V ++ D GE + + ++D ++LDLGL + G Sbjct: 1 MRILLVEDDKMIGDAMQSALKDVAYAVDWICD-GEAALHSLRCQQYDVVLLDLGLPKLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R + V IL+ S+ED+V+GL GADDY+ KPF+ EL+ARIRA+ RR+ Sbjct: 60 LQVMQYIRAQHPALAVIILTARDSLEDRVKGLDLGADDYLVKPFDITELLARIRAVTRRN 119 Query: 120 RGHAQSLIVTGDLSVNL---DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S + + +N +AKT+ I L+ +E+ +++ L +R + +K Sbjct: 120 ANQHTSELTNNIVWLNPATHEAKTLTQDN--ILLSNREFALLQTLLIRPGSIHSKSDLEE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +Y +E E ++ I LRKKL G I+ V G G+++ +NA Sbjct: 178 RIYGWGEEVESNAVEFLIHCLRKKL-----GTETIKNVRGVGWMVSKNA 221 >gi|257884194|ref|ZP_05663847.1| two component transcriptional regulator [Enterococcus faecium 1,231,501] gi|257820032|gb|EEV47180.1| two component transcriptional regulator [Enterococcus faecium 1,231,501] Length = 222 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ A+ + L+ + VY G++ ++ + EFD +LD+ L +I G+ Sbjct: 5 MKILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGY 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV +R + PV L+ I D+V GL+SGA+DYI+KPF+ EEL+AR+ ++RR+ Sbjct: 65 EVFAYMR--EYDLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVLRRNG 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L+ + +N + V + + LT KEY+++ L K L +E ++ Sbjct: 123 KSSSNKLLKWKYIEINEKTRAVTARNQAVSLTPKEYELLLYLIRNKAIILPREKIYQKIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +EP + +D+ I ++R KL + T++G GY+L Sbjct: 183 GREEEPNSRTLDLHIQRIRNKLQLGQD----LRTIYGVGYLL 220 >gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25] gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25] Length = 223 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 122/219 (55%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ + + L+ ++V + G DG+ FD I+LD+ + + G+ Sbjct: 1 MNILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQALETPFDVIVLDVMMPKMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + TPV L+ I D+++GL+ GADDY+ KPF+ ELVAR+R + RR Sbjct: 61 EVLRRLR-KEADTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL +++ + V G RI LT KE+ ++ L + ++ L++ + + ++D Sbjct: 120 SREEEQLQIADLQIDVLKRRVTRAGTRITLTNKEFALLHLFATHQDQVLSRSLIASRVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++DV + +LR K+ + K I +V G GY Sbjct: 180 MNFDSDTNVVDVAVRRLRLKIDDPFQLK-LIHSVRGIGY 217 >gi|91976489|ref|YP_569148.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91682945|gb|ABE39247.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 241 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 128/230 (55%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L+IEDD+ S + ++K+ +V DL GE+G+ L ++D +++D L Sbjct: 16 MRLLIIEDDR---ESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVVDRMLPKR 72 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G V+ LR TP ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + R Sbjct: 73 DGLSVIGTLREKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSR 132 Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R G A ++ GDL ++ + V G + L +E++++E L +T+ M L Sbjct: 133 RHGGPAEETSYRVGDLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLE 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++D +P+ +IDV I +LR K+ + + T+ G GY++R+ + Sbjct: 193 NVWDYHFDPQTNVIDVHISRLRAKIDKGF-DRPLLHTIRGAGYMIRDGIR 241 >gi|302870597|ref|YP_003839234.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506834|ref|YP_004085721.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302573456|gb|ADL49658.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315413453|gb|ADU11570.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 227 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 5/218 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A+A + L L + F V++ GE G+ + A +LD+ L + G E+ Sbjct: 10 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGEAGLAAARRLRPVACVLDIALPGLAGTEI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R LR A TPV L+ D+V GL+ GADDY++KPF+ EL+AR+RA++RR+ G Sbjct: 70 CRRLRAAGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELLARLRAVLRRTAGV 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ G ++++ +TV G + LT E+ ++ L R T+E L ++ Sbjct: 130 PAEQPRTLGAVTLDPARRTVTAGGTPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWGY 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +DV + ++R KL G + I T G GY Sbjct: 190 AAHAGTRTVDVHVAQVRAKL----GPDSVIRTHRGVGY 223 >gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8] gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8] gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000] Length = 229 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+ +DDK + + + + +E + V G++ + +L + D +ILD+ + + G Sbjct: 1 MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ LR + P+ +L+ ++ DK++GL +GADDY++KPFN E++AR+++I+RRS Sbjct: 61 MEVVKELR-KESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R + G L +N D+ V+ ++G I LT E+ ++ LL+ N + + Sbjct: 120 RMQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG+ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGY 224 >gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ + +++ L E F V G + + L K +D ++LDL L + G Sbjct: 3 KILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHYDLVLLDLMLPGVDGLT 62 Query: 62 VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 + + +R K S PV IL+ D+V GL+ GADDYI KPF+ E+VAR++A++RR Sbjct: 63 ICKEIR--KFSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVLRRMA 120 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + L+ DL +N +++ V V+G I LT +E+ ++ L+ ++E Sbjct: 121 PGTVNLPQPERLLTFPDLEINPESRVVVVKGQEISLTPREFDLLLFLASFPGRAFSREQL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L +++ +++ +D I +LR KLS G + I TVWG GY Sbjct: 181 LTNVWGYDYFGDLRTVDTHINRLRDKLS-VNGARQPIATVWGVGY 224 >gi|317401619|gb|EFV82245.1| response regulator protein [Achromobacter xylosoxidans C54] Length = 225 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILLIED+ LA + L +V + +DG+ EFDA+ILDLGL + Sbjct: 1 MRILLIEDEAELARWLSRSLARHAG--FVVEWADDGLVAERRLAVEEFDAVILDLGLPGM 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L +R TPV +L+ S+ +K+ L GADD++ KPF EEL AR+ A+VR Sbjct: 59 DGHTLLAKIRARDDRTPVLVLTARDSLAEKIGTLHEGADDFLPKPFVVEELEARLIALVR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG + G+L + V G + L+ +E+ ++ +L + + K+ L+ Sbjct: 119 RSRGREHPRLTLGNLVFETSGQKFTVSGQALQLSPREHAVLRVLIQKSGEPINKQQILDR 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++ I+V + +LRKKL+ I T+ G GY L ENA D Sbjct: 179 IVTDDADINLEAIEVLVHRLRKKLAETG---VQITTMRGMGYCL-ENAVD 224 >gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 232 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +D+ +A I + L+ E ++V GE+ + + + D +ILD+ + I G+ Sbjct: 4 ISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKIDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R+ K + P+ LS +S DKV GL GADDY++KPF+ ELVAR+ A +RR Sbjct: 64 EVARQIRI-KHNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFSPIELVARVNAQLRRFL 122 Query: 121 GHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q S++ T +++NLD + V V G +I LT KE+ ++ LL+ + E Sbjct: 123 TLNQPKVEEKKSVLETSGVAINLDQRKVNVYGEQIELTPKEFDILYLLASHPKKVYSVEH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ G + V I LRKK+ I+TVWG GY Sbjct: 183 IFQQVWTGDYYDGGSTVAVHIRTLRKKIGEDTRKDKLIKTVWGVGYTF 230 >gi|254486691|ref|ZP_05099896.1| two component transcriptional regulator, winged helix family [Roseobacter sp. GAI101] gi|214043560|gb|EEB84198.1| two component transcriptional regulator, winged helix family [Roseobacter sp. GAI101] Length = 218 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED+ ALA + L++++ NV ++ ++D ++LDL L D G Sbjct: 1 MRILLIEDEAALARPLMEHLEADHHNVEWFGTLDEADSAILALDYDVVLLDLQLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R + TP+ IL+ + D++ GL GADDY+ KPF+ +E+ ARI + RRS Sbjct: 61 SFLSTVRGRGLRTPIIILTARDKVSDRIDGLNRGADDYVIKPFDLDEVTARIHTVCRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I DL++ L +V G+ + LT +E+ ++++L RK + KE +Y Sbjct: 121 DLLTQTISIRDLTICLSDHSVSRAGNPVRLTAREWGVLDVLLRRKTQIVPKETLETAIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E E ++ I +LR KL GK+ I T G GY L+ Sbjct: 181 YGEEVESNALEAHISRLRTKL-----GKDLIATHRGIGYSLQ 217 >gi|45441575|ref|NP_993114.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis biovar Microtus str. 91001] gi|51596756|ref|YP_070947.1| DNA-binding transcriptional regulator PhoP [Yersinia pseudotuberculosis IP 32953] gi|145599096|ref|YP_001163172.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis Pestoides F] gi|153948628|ref|YP_001400585.1| PhoP family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162418657|ref|YP_001607237.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis Angola] gi|186895824|ref|YP_001872936.1| DNA-binding transcriptional regulator PhoP [Yersinia pseudotuberculosis PB1/+] gi|229894482|ref|ZP_04509664.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis Pestoides A] gi|14133539|gb|AAK54056.1|AF333124_1 regulator protein PhoP [Yersinia pseudotuberculosis] gi|14133543|gb|AAK54058.1|AF333125_1 regulator protein PhoP [Yersinia pseudotuberculosis] gi|45436436|gb|AAS61991.1| response regulator protein [Yersinia pestis biovar Microtus str. 91001] gi|51590038|emb|CAH21672.1| response regulator protein [Yersinia pseudotuberculosis IP 32953] gi|145210792|gb|ABP40199.1| response regulator protein [Yersinia pestis Pestoides F] gi|152960123|gb|ABS47584.1| transcriptional regulatory protein PhoP [Yersinia pseudotuberculosis IP 31758] gi|162351472|gb|ABX85420.1| transcriptional regulatory protein PhoP [Yersinia pestis Angola] gi|186698850|gb|ACC89479.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229703501|gb|EEO90518.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis Pestoides A] Length = 223 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + ++ V D ED E F + D I+DLGL Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + + P+ +L+ S +DKV L++GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + V +I LT EY +IE L ++K+ + Sbjct: 118 RNIGLASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKKL G+ I T+ G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLLAEHQGE-VITTIRGQGY 218 >gi|332686801|ref|YP_004456575.1| DNA-binding heavy metal response regulator [Melissococcus plutonius ATCC 35311] gi|332370810|dbj|BAK21766.1| DNA-binding heavy metal response regulator [Melissococcus plutonius ATCC 35311] Length = 228 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 129/226 (57%), Gaps = 8/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K LA +EL L+ E + V G G+E ++AI+LDL L ++ G EV Sbjct: 4 ILIIEDEKNLARFVELELEHEGYTAEVHYNGRTGLEAALNNNWNAILLDLMLPELNGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116 R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+RA I Sbjct: 64 CRRIRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+ I DL++ + + V + I LT +EY+++ L N L +++ LN Sbjct: 123 GNKNITKQTTITYRDLTIEKENRIVRRESEIIELTKREYELLLALMKNVNVVLARDVLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV+I LR K+ + ++YI+TV G GYV+R Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DLPREESYIQTVRGTGYVMR 227 >gi|332283869|ref|YP_004415780.1| two-component response regulatory protein [Pusillimonas sp. T7-7] gi|330427822|gb|AEC19156.1| two-component response regulatory protein [Pusillimonas sp. T7-7] Length = 224 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG- 59 MR+L+IEDD L H+++ L + Y D DG ++ + L L ++PG Sbjct: 1 MRVLVIEDDTTLGHALQEFLVEQG---YAVDWLADGDQVLGAVAGQSYDLLLLDLNLPGH 57 Query: 60 --FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 ++L LR PV IL+ +ED+V GL +GADDY++KPF+ EL AR+RA R Sbjct: 58 SGLDILAKLRAEGEQVPVLILTARDGVEDRVAGLDAGADDYVTKPFDLTELAARVRAFGR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G AQ I G L + + V G R+ L+ +E ++E+L R +TK +N Sbjct: 118 RRTGQAQPFIEAGPLLFDTVGREVRGNGERLSLSVREISVLEMLMARAGRVVTKRQIVNS 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L + ++V++ +LRK+L G I+TV G GY+L Sbjct: 178 LSAWDADFSENAVEVYVYRLRKRLE---GTGASIQTVRGFGYLL 218 >gi|312898268|ref|ZP_07757659.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310620765|gb|EFQ04334.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 229 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD A+A L+++ F + + G+ G+E +D +++D+ L GF++ Sbjct: 4 ILLIEDDLAIAELERDYLEADGFEITIETDGQKGLESALTENYDLLLVDVMLPGKDGFQI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-------I 115 +R +R K P+ ++S DK+RGL GADDYISKPF+ ELVAR++A + Sbjct: 64 VREVRKKK-DIPILMISAKREDIDKIRGLGLGADDYISKPFSPSELVARVKAHSARYERL 122 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ S I G L + + V ++G I LT KE++++ L+ + +K+ Sbjct: 123 IAKADKSLASFIEVGSLEIQPEGHRVFIRGKEISLTHKEFELLLFLARNRGIVFSKDALF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + V + +LR+KL +IETVWG GY L+ Sbjct: 183 ERVWGLDAVGDTATVMVHVNRLREKLEKDPSKPEFIETVWGVGYRLK 229 >gi|256390046|ref|YP_003111610.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356272|gb|ACU69769.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 222 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 17/225 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL EDD A++ + L+ E + V V G G L D ++LDLGL + G E Sbjct: 3 RVLLAEDDAAISEPLARALRREGYEVTVRADGP-GALLAGQSGVDLVVLDLGLPGMDGLE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV +L+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 62 VCRRLRADGHTFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRG-- 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174 T DL + ++++ HR ++LT KE+ ++ +L +T++ Sbjct: 120 -------TPDLGNGVHGVRIDIESHRAYLGDQELNLTAKEFDLLRVLVREVGRVVTRDQL 172 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++D K +D+ I LRKKL + A +I TV G G+ Sbjct: 173 MREVWDTTWWSSTKTLDMHISWLRKKLGDEASRPRFITTVRGVGF 217 >gi|75907669|ref|YP_321965.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701394|gb|ABA21070.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 224 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 9/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY----EFDAIILDLGLTD 56 MRILL+EDD ++ +L Y+ D EDG E+ ++ ++D +ILD L Sbjct: 1 MRILLVEDDYEQLEPLQGILSEAG---YIVDTAEDG-EIAEWLISQKDYDLLILDWMLPT 56 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 I G + R R + + P+ +L+ + DKV GL +GADDY+ KP + EL+AR+RA+ Sbjct: 57 ISGLSLCRQYRCSGKTAPILMLTARDTTPDKVMGLDAGADDYLVKPADLVELLARVRALA 116 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RR + DL ++L TVE + ++ L+ +E +++E L N LT+ Sbjct: 117 RRVPNWQGDSLRVADLQLHLAYLTVEREQLKVELSPREARLLEYLMRHPNQVLTRSQIEE 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L++ EPE + V + KLR +L + +I TV+G GY L Sbjct: 177 ALWEWGMEPESNALTVLVRKLRHRLQQVDAAE-WIRTVYGMGYRL 220 >gi|327470410|gb|EGF15866.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 234 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 3/203 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVWS 180 Query: 181 GRDEPEVK--IIDVFICKLRKKL 201 ++ ++ + ++I LR+KL Sbjct: 181 KEEDKDLDEGFVWIYISYLRQKL 203 >gi|331674568|ref|ZP_08375328.1| transcriptional regulatory protein QseB [Escherichia coli TA280] gi|331068662|gb|EGI40057.1| transcriptional regulatory protein QseB [Escherichia coli TA280] Length = 219 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +D +ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDTVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 234 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 123/225 (54%), Gaps = 10/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+K + I + LK+E + V + GE+G+EL K E I+LD+ + I G + Sbjct: 6 IMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 ++V +I+ P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + GD+ +N+ V + + LT +E+ ++ELL+ + ++ E Sbjct: 124 MNGGISAQNENEVEIGDMKINVTTHKVTIADQEVKLTPREFAILELLARNQGMVMSAEQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R+K+ Y++TVWG GY Sbjct: 184 YERVWKEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGY 228 >gi|66047192|ref|YP_237033.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257899|gb|AAY38995.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330973017|gb|EGH73083.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 223 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G E+ ILD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALNSEEYAVAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+ +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQCCGVLAYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I++++ +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVAIVTFRGLGYLL 218 >gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ L + L+ + + + GE+ ++ FD IILDL L I G E Sbjct: 4 KLLVVDDEPLLVKGLRYSLEQDGYEILSASDGEEALDKFNKGSFDLIILDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R TP+ +L+ K+ GL+ GADDY++KPFN EL ARI+A++RR++ Sbjct: 64 VCQTIRQTS-QTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVLRRAQS 122 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +I D +N + V + G ++LT KE+ ++ LL+ ++E L Sbjct: 123 KEGNVGERVIHIDDFKINTMGRKVSIHGEEVNLTAKEFDLLLLLASNHGKVYSREALLEI 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +DV + +LR+K+ + + YI T WG GY R Sbjct: 183 IWGYEYFGDLRTVDVHVRRLREKVESNSSQPKYILTKWGVGYYFR 227 >gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G + LT +E+ + +L ++ L Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|220910718|ref|YP_002486028.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] gi|219867490|gb|ACL47827.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 234 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 10/233 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD LA ++ L S + V D G G+ L + +D ++LD L + G Sbjct: 1 MKILLVEDDPDLATALMKGLTSNLYQVDWADDGAAGLALAQVKAYDLVLLDFYLPKLSGL 60 Query: 61 EVLRALR---------VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111 E+ R +R P+ +L+G S+ KV L +GADD++ KP + +EL+AR Sbjct: 61 ELCRKIRRGSERVTDAAPNQEIPILVLTGESATAQKVLCLDAGADDHVVKPVDLDELLAR 120 Query: 112 IRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 IRA++RR G ++ G+L ++ + V+ + + LT KEY ++ELL + Sbjct: 121 IRALLRRGMGQRSPILHWGELQLDPSSYEVKFRQQVVPLTSKEYAVLELLLRHPTQVFSP 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ L+ G D I +I LR+KL G + IET G GY L+ Sbjct: 181 AHMIDRLWAGDDSRADATIRFYIQTLRQKLKQ-VGAEEIIETKHGLGYRLKPQ 232 >gi|163758770|ref|ZP_02165857.1| probable two-component response regulator protein [Hoeflea phototrophica DFL-43] gi|162284060|gb|EDQ34344.1| probable two-component response regulator protein [Hoeflea phototrophica DFL-43] Length = 225 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ L I L+ V G+D + ++D +ILD + + G Sbjct: 1 MRILLLEDDRDLGPWITKGLREAGHVVDHFPDGKDALIAAMGQDYDLLILDRMVPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL++LR +K +TP L+ + ++ +V G ++G DDY++KPF EL AR+ A+ RR Sbjct: 61 AVLKSLRASKNTTPALFLTALGEVDSRVEGFEAGGDDYLTKPFAFVELSARVNALGRRRE 120 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G S++ L ++L A++ E QG I L KE++++E R +T+ M L Sbjct: 121 GTQDSEPSVLHYAGLKLDLLARSCERQGQPIDLMAKEFKLLEYFMRRPGRLVTRTMLLEQ 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D +P +++ I +LR K+ + I T G GYV Sbjct: 181 VWDMSFDPTTSVVETHISRLRAKVDKPF-DEELIRTRRGEGYVF 223 >gi|330808523|ref|YP_004352985.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376631|gb|AEA67981.1| Putative response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 226 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED + L FN + G G +L E+ +ILD+ L G+ Sbjct: 1 MKLLIVEDQTKTGQYLRQGLGEAGFNADLVADGITGQQLVLSGEYALLILDVMLPGRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 ++L+A+R A + TPV L+ +++D+V GL+ GADDY+ KPF EL+AR+R+++RR S Sbjct: 61 QILQAVRGAGLDTPVLFLTARDAVQDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + DL ++L + VE G RI LT KE+ ++E+L R+ L K + + ++ Sbjct: 121 STQQETSLQLADLRLDLIRRRVERSGRRIDLTAKEFALLEMLLRRQGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +I+V I +LR K+ + K I TV G GYVL E + Sbjct: 181 DMNFDSDTNVIEVAIRRLRIKIDDDFPSK-LIHTVRGMGYVLEERS 225 >gi|209885691|ref|YP_002289548.1| transcriptional activator protein CopR [Oligotropha carboxidovorans OM5] gi|209873887|gb|ACI93683.1| transcriptional activator protein CopR [Oligotropha carboxidovorans OM5] Length = 226 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 124/227 (54%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + GE+G+ L + +D +++D L G Sbjct: 1 MRLLIIEDDRESAEYLAKAFREAGHVAELARDGEEGLALAQSGGYDVLVVDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR +TP ILS + ++D+++GL++G DDY+ KP++ EL+AR+ + RR Sbjct: 61 SVIGTLRETGDTTPALILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + ++ GDL ++ + V+ G I L +E++++E L +T+ M L +++ Sbjct: 121 GPSEETSYRVGDLELDRLSHQVKRGGTEITLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ + T+ G GY++R+ + Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKGQ-EVPLLHTIRGAGYMIRDGLR 226 >gi|206978308|ref|ZP_03239184.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217957829|ref|YP_002336373.1| DNA-binding response regulator [Bacillus cereus AH187] gi|225862313|ref|YP_002747691.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|229137101|ref|ZP_04265723.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206743476|gb|EDZ54907.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068004|gb|ACJ82254.1| DNA-binding response regulator [Bacillus cereus AH187] gi|225789374|gb|ACO29591.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228646361|gb|EEL02573.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 233 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|270307528|ref|YP_003329586.1| DNA-binding response regulator [Dehalococcoides sp. VS] gi|270153420|gb|ACZ61258.1| DNA-binding response regulator [Dehalococcoides sp. VS] Length = 226 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAH--SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M+ILLIEDDK + +I L + ++ +++ + G+ G+E+ + + D ++LDL L D+ Sbjct: 1 MKILLIEDDKDIIEYITIALEMGHKDISLFTSMDGKRGLEILETQQPDLVMLDLMLPDMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF +L++++++ +TPV I++ +S D V+GL GAD+YI KPF + E++ARI A+VR Sbjct: 61 GFNLLKSIKLSS-NTPVIIITARASEIDIVKGLMLGADEYIIKPFGQMEIIARIMAVVRS 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +A I+ GD+ N T+ I L+ E +I L + T E L Sbjct: 120 HKSNALDDIIRGDIRFNAFKSTISFYDKVISLSRTEALIINELFNKDEQVTTYEEIGQAL 179 Query: 179 YDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + G P ++ I V+I +LR KLS A+ GK I T G GY L N+ Sbjct: 180 W-GESYPGMQNAIRVYIMRLRTKLSQASSGKVLIRTKPGIGYYLSLNS 226 >gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 241 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 19 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 76 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 77 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 136 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 137 KKTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 196 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 197 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 239 >gi|330964534|gb|EGH64794.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 223 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G E+ ILD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALSSEEYAVAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+ +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGVLAYDLDTRRFTLSDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I++++ +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVCIVTFRGLGYLL 218 >gi|318041850|ref|ZP_07973806.1| two-component response regulator [Synechococcus sp. CB0101] Length = 227 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD +A ++ +L+ T G + + L + FD ++LDL L + G Sbjct: 1 MKVLIVEDDPVIAGAVAELLQHWGLVTETTGNGLEALALLEASPFDLVLLDLNLPGLDGL 60 Query: 61 EVLRALRVAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R LR + P V +L+ S++D V GL+ GADDY+ KPF L ARI+A++RR+ Sbjct: 61 EVCRRLRRMPGNQPLVLMLTARDSLDDNVLGLEQGADDYLVKPFEPALLKARIQALLRRA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q G L ++LD +T + LT KE+ ++E L T +K+ + + Sbjct: 121 SRPLQEDWSWGGLKLSLDGRTASFNQQDLRLTPKEHALLEALMKAGGRTCSKDQLIEAAW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D P + + + +R KL+ + IETV+G G+ L Sbjct: 181 AWADVPGDESVKTHVKNIRAKLNQTGAPADLIETVYGVGFRL 222 >gi|251790853|ref|YP_003005574.1| winged helix family two component transcriptional regulator [Dickeya zeae Ech1591] gi|247539474|gb|ACT08095.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 232 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L H + L +E F+ G++G++ ++ A+ILD+ L D+ G Sbjct: 7 MKILLVDDDAELGHMLCEYLTAEGFSTSQVMTGKEGVDGAMSDQYTAMILDIMLPDMSGI 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R + S P+ +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 67 DVLRQVRRNR-SIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 125 Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ I G+L ++ ++ E +G LT E+ ++ELL +TK+ Sbjct: 126 DKAEKSEDAGTINYGELVISPSTRSSEWRGKAFDLTASEFNLLELLIRSSERVVTKDELS 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R E + +DV I +R+KL+ G IETV GY +R Sbjct: 186 EKCLGRRREAYDRSVDVHISNIRQKLAALDGCSLTIETVRSVGYRIR 232 >gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 242 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 7/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +D+ + ++ L L E F V + GE+ + L + + D I+LD+ L + G +V Sbjct: 13 VLIADDEPSFVEALVLGLTREGFETIVANDGEEALALSRSHHPDLILLDVMLPRLSGLDV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R +R + S P+ +++ S D V GL+ GADDY++KPF ELVARIRA +RR++ Sbjct: 73 CRTIR-QESSVPIIMVTARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRRTKHQ 131 Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G AQ+ ++ + ++V +D V+V+G + L KE+ ++ L LT+++ L+ Sbjct: 132 GQAQAAEEILESHGITVYVDRHQVDVRGTEVRLPPKEFDLLLLFLRNPGRVLTRDLILDR 191 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAK 226 ++ + K +DV + +LR K+ + I TV G GY L R++A+ Sbjct: 192 VWGSDYYGDTKTLDVHVKRLRSKIEPDPNNPSIIATVRGVGYRLERDHAR 241 >gi|225571191|ref|ZP_03780189.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM 15053] gi|225160022|gb|EEG72641.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM 15053] Length = 229 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 126/230 (54%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A IEL L+S+ ++V+ G++ ++ + D ILD+ L DI GF Sbjct: 1 MNILVVDDEKEIADVIELYLQSDQYDVHKCYTGQEALDYIGSMKIDLAILDIMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R K + PV +L+ + DK+ GL GADDYI KPFN ELVAR++A +RR Sbjct: 61 QILKQIR-GKYTFPVIMLTAKTEYMDKITGLTMGADDYIPKPFNPLELVARVKAQLRRCT 119 Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I G L +N + + LT E+ ++ LL + ++ E Sbjct: 120 QYNDGSREEGDIIDFGGLFLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEEL 179 Query: 175 LNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + + + V I LR+K+S G ++I+TVWG GY + E Sbjct: 180 FEKVWNEQYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVEE 229 >gi|62261777|gb|AAX78015.1| unknown protein [synthetic construct] Length = 263 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 123/236 (52%), Gaps = 11/236 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L + L+ E V + GE + +D ++LD+G+ G Sbjct: 27 MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 86 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 EVLR +R I P+ +L+ +ED+++GL GADDY++KPF +ELVARI+AI R Sbjct: 87 EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 146 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RS I GD S N ++TV G I ++ KE ++ +L + K L Sbjct: 147 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 206 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 +Y E + ++V + LRKK++ N+I+T+ G GY ++ KD+ +Y Sbjct: 207 EVYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYFVQ---KDKVIKY 255 >gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 234 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 12/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + IEL + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTEL 121 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A QSL + DL + DA + G + LT +E++++ L+ +T+ Sbjct: 122 VAVDNQEEDTKLQSLQIR-DLEILPDAYVAKKYGEELDLTHREFELLHHLASHLGQVITR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 181 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233 >gi|239815564|ref|YP_002944474.1| osmolarity response regulator [Variovorax paradoxus S110] gi|239802141|gb|ACS19208.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 243 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 +I++++DD + + L E F V V EDG L + D I+LDL + Sbjct: 10 KIVIVDDDARIRDLLRRYLTQEGFEVIV---AEDGKALNRILLRDTVDLIVLDLMMPGED 66 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G V R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+AR+ A++RR Sbjct: 67 GLSVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRR 126 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + + G + +L ++T++ G + LT E+ M++ L L+ Sbjct: 127 RPPLEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLS 186 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L L GR+ EP + +DV I +LRK + A YI+TVWG GYV Sbjct: 187 REK-LAQLARGREFEPFDRSLDVQISRLRKLVEADAAAPRYIQTVWGVGYVF 237 >gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341] gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341] Length = 234 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 129/230 (56%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A+ ++ LK E ++V V + GE +EL D I+LDL L G E Sbjct: 5 KILVVDDEEPIANILDFNLKKEGYDVIVANDGEKAVELAFSENPDLILLDLMLPKKDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK + P+ +L+ +S DKV GL+ GADDY++KPF+ EL+AR++ +RR Sbjct: 65 VCREVR-AKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123 Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ V D+ + +A ++ G I LT +E+ + L+ + LT+E Sbjct: 124 QQEEVVEEKSGSDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ +V+ +DV + +LR+K+ + + YI T G GY + E Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGYFIGE 233 >gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 233 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 11/235 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+++D+ A+ S+ L +NV + G +E+ + + +ILD+ + + G Sbjct: 1 MKVLVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREHPEIVILDVMMPRMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R LR + IL+ ++ D+V GL +GADDY++KPF EEL+AR+R++VRRS Sbjct: 61 EVCRTLRSQGDDRSILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLVRRSA 120 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + Q+ + GDL++N + + V I LT E+ ++ELL L + Sbjct: 121 VESNNNAASNRQTELTFGDLTLNPETRDVSRAVRPISLTRTEFALLELLMKNPRKVLPRN 180 Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++ G D P ++V+I LR+K + G I TV G GYVLRE A Sbjct: 181 TILEEVW-GYDFPTSGNALEVYIGYLRRK-TEQEGESRVIYTVRGVGYVLRETAP 233 >gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp. subtilis str. 168] gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp. subtilis str. 168] gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp. subtilis str. SMY] gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein ykoG gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis] gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp. subtilis str. 168] gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto BEST195] Length = 228 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ +A ++L L+ E ++V + G +G++ + ++LD+ L + G EV Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR TPV +L+ SI DKV GL GA+DY++KPF EEL+ARIRA +R++ Sbjct: 66 LRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTK 125 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + DL VN + V + LT +E+ ++ + LT+E L+ ++ Sbjct: 126 TEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++DV+I +RKKL + K I T+ G GY ++ Sbjct: 186 GFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGYAIK 227 >gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 228 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++D+ +L + L+ E F V GE +E +E IILD+ L + G E Sbjct: 7 RILLVDDEPSLQKMLTHALEREGFQVQAVGDGEAALEAFNTFEPHLIILDIMLPKLDGTE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R A+ P+ +L+ D+V GL+ GADDY++KPF ELVAR+RAI+RR++ Sbjct: 67 VCRRIR-AQSDVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMRRAQV 125 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + L +NL ++ V V G + LT E++++ L+ ++ L + Sbjct: 126 PAGQRPDELNYDGLKINLPSRRVSVDGREVDLTYTEFELLVTLASNPGKVFSRSALLRRV 185 Query: 179 Y--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + RDE + +DV I LR+K+ +I T G GYV R Sbjct: 186 WGDEFRDE---RTVDVHIRHLREKIERDPRNPEFIHTARGVGYVFR 228 >gi|116495160|ref|YP_806894.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191638669|ref|YP_001987835.1| Response regulator [Lactobacillus casei BL23] gi|199597204|ref|ZP_03210636.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|227534824|ref|ZP_03964873.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632042|ref|ZP_04675073.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|258508721|ref|YP_003171472.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258539900|ref|YP_003174399.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|301066724|ref|YP_003788747.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116105310|gb|ABJ70452.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712971|emb|CAQ66977.1| Response regulator [Lactobacillus casei BL23] gi|199592008|gb|EDZ00083.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|227187580|gb|EEI67647.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526507|gb|EEQ65508.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|257148648|emb|CAR87621.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257151576|emb|CAR90548.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259650027|dbj|BAI42189.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|300439131|gb|ADK18897.1| DNA-binding response regulator, OmpR family [Lactobacillus casei str. Zhang] gi|327382710|gb|AEA54186.1| DNA-binding response regulator YycF [Lactobacillus casei LC2W] gi|327385897|gb|AEA57371.1| DNA-binding response regulator YycF [Lactobacillus casei BD-II] Length = 228 Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL LK E + V G G+E ++DAI+LDL L ++ G E Sbjct: 3 KILIIEDEKNLARFVELELKHEGYETEVHFNGRTGLEAALAEDWDAILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AI 115 V R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+R +I Sbjct: 63 VCRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRISI 121 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ I DL + + + V I LT +EY+++ L N L +++ L Sbjct: 122 EGENNTAKQTTIKYRDLVIEKENRVVRRGDDIIELTKREYELLLTLMENVNVVLARDVLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + E ++DV++ +R K+ + G +YI+TV G GYV+R Sbjct: 182 SKVWGYNSDVETNVVDVYVRYIRNKI-DRPGEPSYIQTVRGTGYVMR 227 >gi|49479989|ref|YP_034596.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218901462|ref|YP_002449296.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228913000|ref|ZP_04076642.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228983517|ref|ZP_04143725.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089394|ref|ZP_04220667.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229154029|ref|ZP_04282157.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|301051996|ref|YP_003790207.1| response regulator [Bacillus anthracis CI] gi|49331545|gb|AAT62191.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218538182|gb|ACK90580.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228629449|gb|EEK86148.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228693943|gb|EEL47633.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228776224|gb|EEM24582.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228846654|gb|EEM91664.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300374165|gb|ADK03069.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 233 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|323439204|gb|EGA96931.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus O11] gi|323442418|gb|EGB00047.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus O46] Length = 231 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD A+ H +++ L + +NV + + + D I+LDLGL D G Sbjct: 4 KILIIEDDHAITHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLC 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R P+ ++S + ++ L +GA+DY++KPFN +EL ARIR I R ++ Sbjct: 64 LISEIR-QHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H ++ IV G LS++ +K+V + +HLT E+ ++ELL+ K LT EM L +Y Sbjct: 123 HQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLANHKGKVLTYEMILKRIY 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219 ++ E+ + V + LR+KLS K+ I+T GY Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGY 223 >gi|229552527|ref|ZP_04441252.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314079|gb|EEN80052.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 237 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL LK E + V G G+E ++DAI+LDL L ++ G E Sbjct: 12 KILIIEDEKNLARFVELELKHEGYETEVHFNGRTGLEAALAEDWDAILLDLMLPELNGLE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AI 115 V R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+R +I Sbjct: 72 VCRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRISI 130 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ I DL + + + V I LT +EY+++ L N L +++ L Sbjct: 131 EGENNTAKQTTIKYRDLVIEKENRVVRRGDDIIELTKREYELLLTLMENVNVVLARDVLL 190 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + E ++DV++ +R K+ + G +YI+TV G GYV+R Sbjct: 191 SKVWGYNSDVETNVVDVYVRYIRNKI-DRPGEPSYIQTVRGTGYVMR 236 >gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112] gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112] gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 241 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 129/227 (56%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E + V V GE +E + D IILDL L I G E Sbjct: 10 KILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKIDGLE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R AK + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 70 VAKRVR-AKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 128 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + I GDL+++ +A TV +G I+LT +E++++ L+ + +E Sbjct: 129 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 188 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +V+ +DV + +LR+K+ + ++ T G GY L Sbjct: 189 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235 >gi|219848756|ref|YP_002463189.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543015|gb|ACL24753.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 227 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 2/220 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD L + + L+ E + V T G + I L + D +ILD+ L D+ G V Sbjct: 7 ILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQRPDLVILDIMLPDLDGLTV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R STP+ +L+ ++ D + GL GADDY++KPFN +EL+ARIR ++RR Sbjct: 67 CQRVR-EFASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRRVPSV 125 Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L V G +++N + V V+G I LT EYQ++ +L+ + +T E L ++ Sbjct: 126 NRPLTVGNGLITINPRQREVRVRGTIIDLTPTEYQLLMVLAEQAGAVVTHEQLLRAVWGN 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + V+I LR+K+ + T WG GY L Sbjct: 186 EPNRDNDYLKVYIWHLRRKIEFDPRQPQLLLTEWGVGYRL 225 >gi|222056727|ref|YP_002539089.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221566016|gb|ACM21988.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 226 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 1/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI+++ED+ + +I+ L++E F G + + D IILD+GL D+ GFE Sbjct: 4 RIMIVEDEPGIVDAIQYALETEGFETLCFPSGTQVVSSLADHAVDLIILDVGLPDMSGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R + S P+ L+ + D++ GL+ GADDYI+KPF+ E+ AR++A++RR+ Sbjct: 64 LCKQIRQLR-SVPIIFLTARADEIDRIVGLEIGADDYITKPFSPREVSARVKAVLRRTGT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + TG +VN + + G + L+ E+ +++ R +++ + +++ Sbjct: 123 GNKPSPCTGTFAVNESKRQISYLGRVLDLSRYEFDILKTFIRRPGHVFSRDQLMQIVWEH 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D + ID I +R KL GK+ I T G GY LRE+ Sbjct: 183 PDCSLDRTIDAHIKNIRAKLRTIEPGKDPIVTYRGTGYALRED 225 >gi|158319899|ref|YP_001512406.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140098|gb|ABW18410.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 231 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57 +RIL+IEDDK + + I L LK+ N YV D + GI+ + FY D I+LDLGL DI Sbjct: 5 LRILIIEDDKYILNFISLSLKT---NGYVFDTAKTGIQGMSLFYSNNPDVILLDLGLPDI 61 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++++++R+ P+ I+S ++K+ L +GADDYI+KPF+ EL+ARIR + R Sbjct: 62 DGIDIIKSIRMIS-EVPILIVSARGEEKEKISALDAGADDYITKPFHMGELLARIRVVER 120 Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + Q + L+++ + + V V IHLT EY+++ LL K LT Sbjct: 121 KLKKAVQGDNAEIFQLDYLTIDYERRMVLVDHKEIHLTPIEYKLLLLLVENKGKVLTHNY 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ + + K I VF+ LR+K+ +I T G GY Sbjct: 181 ILKKIWGYGETGDSKSIRVFMANLRRKIEKDKTSPRFIFTEVGVGY 226 >gi|330962432|gb|EGH62692.1| DNA-binding response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 227 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 124/233 (53%), Gaps = 9/233 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M +LL+EDDK +A + L ++ FNV + G + + L F+ +ILDLGL D Sbjct: 1 MHVLLVEDDKLIAEGVIAGLGAQGFNVEHVINAAGAEAMLLAA--RFEVMILDLGLPDKD 58 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +LR LR PV IL+ SI D+V GLQ+G DDY+ KPF+ EL AR+ + RR Sbjct: 59 GLTLLRLLRERSFHLPVLILTARDSIADRVAGLQAGGDDYLLKPFDLRELAARLHTLHRR 118 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + +LI G L ++ + + G I L+ +E +++ L K ++ + + + Sbjct: 119 FLGRSTNLIQHGSLGIDPTTRETFLAGEPIDLSRREQSLLKALLDSKGRIVSADQLKDAV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 Y D+ E ++V I LR+KL N N + TV G GY + A DE+ E Sbjct: 179 YGFADDVESNALNVHIHNLRRKLGN-----NIVHTVRGLGYRIGSAATDESDE 226 >gi|307946640|ref|ZP_07661975.1| transcriptional activator protein Irlr [Roseibium sp. TrichSKD4] gi|307770304|gb|EFO29530.1| transcriptional activator protein Irlr [Roseibium sp. TrichSKD4] Length = 226 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR++++EDD + + L E V G + + +D +ILD + G Sbjct: 1 MRLMVLEDDPEIGQWVYDGLTREGHVVDWLKDGREALAAGSINSYDVLILDRMTPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ALR AK++TPV L+ M ++D+V GL++G DDY++KPF EL AR+ A+ RRS Sbjct: 61 SVLKALRAAKVATPVLFLTAMGDVDDRVEGLEAGGDDYLAKPFAFSELKARVGALGRRSS 120 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ T D+ ++L + G + L GKE+ ++E L T+ M L Sbjct: 121 FASEQTETTKLNVKDIELDLLRRKCTRAGQDVDLNGKEFALLEALIRSNGRIQTRNMLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ +P +++ I +LR K+ G I TV G GYV+ + Sbjct: 181 KVWNMNFDPTTSVVETHISRLRGKIEKPF-GDTVIRTVRGAGYVIED 226 >gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 233 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNSGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|104782714|ref|YP_609212.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila L48] gi|95111701|emb|CAK16425.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila L48] Length = 226 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED + L F + G+ G L + D +ILD+ L G+ Sbjct: 1 MKLLIVEDQAKTGQYLCQGLSEAGFATELATDGDTGQHLALTGDHDLLILDVMLPGRNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+++R A + TPV L+ ++ED+V GL+ GADDY+ KPF EL+AR+R+++RR Sbjct: 61 QILQSVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q + + DL ++L + E G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 NASQDTHLALADLRLDLIRRRAERSGQRIDLTAKEFALLELLLRRQGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + +I+V I +LR K+ ++ K I TV G GYVL E Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDSHPTK-LIHTVRGMGYVLEE 223 >gi|42779375|ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735291|gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 233 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I++ LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|85704878|ref|ZP_01035979.1| two-component response regulator [Roseovarius sp. 217] gi|85670696|gb|EAQ25556.1| two-component response regulator [Roseovarius sp. 217] Length = 223 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD I L+ E +V + G D + +D +I+D L +I G Sbjct: 1 MKLLVVEDDATTGAYIARGLREEGQSVDLVSNGRDALIQATSGPYDVLIIDRMLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A TPV L+ + S++++V GL +GADDY+ KPF EL AR+ A+ RR Sbjct: 61 TLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRPH 120 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q +++ G L ++L A+ V + H I L +E+ ++E L RK T+ M L ++ Sbjct: 121 ALDQETMLRAGPLEMDLIARKVTRERHEIDLLPREFAILEHLMRRKGRVQTRTMLLEAIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P +++ I +LR K+ + I+TV G GY Sbjct: 181 DISFDPMTNVVETHISRLRAKVDRPF-ATDLIKTVRGAGY 219 >gi|120611675|ref|YP_971353.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590139|gb|ABM33579.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 258 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 128/233 (54%), Gaps = 13/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58 M++LL+EDD A+ +++ L V T LG+ L ++ DA++LDL L + Sbjct: 31 MQLLLVEDDPAMQATLQRSLARRGMEV--TALGDGRAALAQWASRPPDAVVLDLTLPGLD 88 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +VL+ R + TPV +L+ ++ D+V GL +GADDY+ KPF+ +EL AR+RA+VRR Sbjct: 89 GLQVLQQARARGLRTPVLLLTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALVRR 148 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +R A S + G + D+ + G + LT +E ++ L + + KE Sbjct: 149 LGDLSEARPPAPSTVSIGAIRYEKDSGAIYRDGEVMELTPRELALMHALLAQPGHAVAKE 208 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ G+ + + + I+V + +LRKKL AG + T+ G GY+L+ +A Sbjct: 209 RLYELVFPGQLDVQYEAIEVVVYRLRKKL---AGTGLTLMTLRGLGYLLKADA 258 >gi|325840156|ref|ZP_08166964.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325490395|gb|EGC92718.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 218 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 132/225 (58%), Gaps = 13/225 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDIP 58 ++L++EDD ++A I+L L N Y+T+ EDG+ E + +FD I+LD+ + + Sbjct: 4 KVLIVEDDLSIARLIKLNL---NLAGYLTESVEDGLLAFERIQKEKFDLILLDVMIPGMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF+++ +R ++ PV L+ +S DKV GL+ GADDY+ KPF EL+ARI A++RR Sbjct: 61 GFKLMEKIR--PLNIPVIFLTAKTSTMDKVDGLRLGADDYMVKPFEAIELLARIEAVLRR 118 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G L+ +++VN + + VE+ G+ ++LT KEY + L KN L++E + + Sbjct: 119 Y-GKVHKLLTYKNITVNDEKREVELNGNVVYLTVKEYDLFLTLLKNKNIALSREQLIEKV 177 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + +D+ I LRKKL G + I+TV+ GY L + Sbjct: 178 WGIDYYGETRTVDMHINALRKKL----GLQEEIKTVYKIGYRLED 218 >gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] Length = 227 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++L L+ E + + G + +E +D I+LD+ L +I G E Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVMLPNISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R+ P+ +L+ S+ DKV GL GA DYI+KPF EEL+ARIRA +R S Sbjct: 64 VLRRVRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISHA 123 Query: 122 HAQSLIVTGDLS-VNLDAKTVEVQ-GHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + ++ + LD KT EV+ G+ + LT +E+ ++ L +N L +E + ++ Sbjct: 124 IKEEEYSSFHIADLFLDEKTREVKRGNNVAELTPREFDLLHFLMKHENQVLNREQIVTNV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + ++DV+I LRKK+ + I TV G GYVL+ Sbjct: 184 WGFDYYGDTNVVDVYIRYLRKKI-DCNVDVPLIHTVRGVGYVLK 226 >gi|153954880|ref|YP_001395645.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855334|ref|YP_002472456.1| hypothetical protein CKR_1991 [Clostridium kluyveri NBRC 12016] gi|146347738|gb|EDK34274.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569058|dbj|BAH07042.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 232 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 110/226 (48%), Gaps = 6/226 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDDK + + I L S+ + TD G++ I L D IILDLGL DI G EV Sbjct: 7 ILIVEDDKPIRNFIAAALSSQGYKYIETDKGKEAIALSMANNPDIIILDLGLPDIDGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + +R + P+ I+S KV L GADDY++KPF EL+ARIR +R S Sbjct: 67 ISKIRELS-NIPIIIVSAREKERQKVEALDKGADDYLTKPFGIGELLARIRVSLRHSISN 125 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A L V+ D + V V IHLT EY+++ELL LT Sbjct: 126 EKENTAMHTFKVKQLFVDFDKRRVTVNDDEIHLTPIEYRIMELLCKYSGKVLTHNFITRE 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + + VF+ LR+KL YI T G GY L E Sbjct: 186 IWGTSLGNETQSLRVFMANLRRKLEKDPSQPEYIYTEVGVGYRLVE 231 >gi|220930052|ref|YP_002506961.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220000380|gb|ACL76981.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 234 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 10/226 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + I + L++E +NV V G++G+E+ + +ILD+ L G ++ Sbjct: 6 ILVIDDDKEIVELIRIYLQNEGYNVLVGFNGDEGVEILAKQKIHLLILDIMLPGEDGLQI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R + I P+ ++S S DK+ GL +GADDY++KPFN EL+AR+++ +RRS Sbjct: 66 CRKIRESYI-IPIIMVSAKSCDMDKIMGLGTGADDYLAKPFNPMELMARVKSQLRRSFYM 124 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + H +++I LS+N + TV + G+ + LT EY+++ LL+ + E Sbjct: 125 NTQVLDKQHDENIINICGLSINKNNHTVSLLGNIVDLTPTEYEILLLLAGSPGKVFSVEK 184 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I ++R+KL + I+T+WG GY Sbjct: 185 IFESVWKQKFYESNNTVMVHIWRMREKLESNPKEPKIIKTIWGVGY 230 >gi|47567511|ref|ZP_00238223.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47555913|gb|EAL14252.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 233 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYTVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanibulbus indolifex HEL-45] gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanibulbus indolifex HEL-45] Length = 229 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+ED+ A + L++E F V + GE+ + L D +ILD + + G E Sbjct: 7 QVLLVEDEPAQREVLAYNLEAEGFEVRRAEDGEEAMLLVSEAAPDLVILDWMMPLMSGIE 66 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ + + PV +LS S D VRGL++GADDY+ KP+N EL+AR+R +RR+ Sbjct: 67 VCRQLKTRESTRHIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRRT 126 Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A +L+ D+ ++ + V G + L EY+++ L + +++ L+H+ Sbjct: 127 RPAAAGALLSFDDIQLDPERHRVSRAGSELKLGPTEYRLLTTLLEKPGRVFSRDQLLDHV 186 Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + GRD + + +DV I +LRK L+ GG + I TV G GY L Sbjct: 187 W-GRDIYVDTRTVDVHIARLRKALTREGGG-DPIRTVRGAGYAL 228 >gi|330502429|ref|YP_004379298.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328916715|gb|AEB57546.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 230 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 118/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+ED LA S+ LK + V V G ++ ILD+GL + GF Sbjct: 8 VRILLVEDHPQLAESVAQALKGAGWTVDVLHDGVAADLALSSEDYALAILDIGLPRLDGF 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + PV +L+ ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 68 AVLARLRDRGQTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 127 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L GDL +L A+ ++G + LT +E ++E + R ++KE ++ Sbjct: 128 LGGEQLQRCGDLVYDLGARRFSLEGEALSLTAREQAVLEAMIARPGRVMSKEQLAAQVFG 187 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ I+++I +LRKKL +A I T G GY+L Sbjct: 188 LDEDASPDAIEIYIHRLRKKLEGSA---VRIVTFRGLGYLL 225 >gi|324991294|gb|EGC23227.1| DNA-binding response regulator [Streptococcus sanguinis SK353] Length = 234 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179 Query: 181 GRDEPE---VKIIDVFICKLRKKL 201 +DE E + ++I LR+KL Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203 >gi|319764977|ref|YP_004128914.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330827171|ref|YP_004390474.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317119538|gb|ADV02027.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329312543|gb|AEB86958.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 225 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L + + V G L FDA++LDLGL + G Sbjct: 1 MRILVVEDEPTLCAQLVQAIAGAGHTVESAGDGVQAHYLGDVESFDAVVLDLGLPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR R A + PV IL+ S ++KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 SVLRRWRAAGRNMPVLILTARGSWQEKVAGMDAGADDYLAKPFHMEELLARLRALLRRVG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G + ++ V V G + LT E++++ LL RK L++ H+Y Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGRPLTLTSHEFKLLSLLMQRKGEVLSRTELAEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + I+VF+ +LRKKL IETV G GY L Sbjct: 181 QDSERDSNTIEVFVGRLRKKLPEGC-----IETVRGLGYRL 216 >gi|295398157|ref|ZP_06808206.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973676|gb|EFG49454.1| response regulator [Aerococcus viridans ATCC 11563] Length = 227 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59 M+IL+ +DDK + + + +E++ V G++ ++ + + + ++LD+ + G Sbjct: 1 MKILITDDDKEIVELLTIYATNEDYEVIQAFDGDEALKKIAENPDIAMMVLDIMMPGKDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V++ LR + P+ +LS SS DK+ GL +GADDY++KPFN E++ARI++++RR+ Sbjct: 61 ITVIKELRKRDVDMPILLLSAKSSDMDKISGLTTGADDYVTKPFNPLEVMARIKSLLRRA 120 Query: 120 R--GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + I G L +N ++ V+ G +I LT E+ ++ LL+ N + + Sbjct: 121 STAGDDSATIEVGPLVINKNSHEVKTTDGQQIQLTALEFGILYLLASNPNNVFSADEIFE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG I TVWG GY Sbjct: 181 RVWQQESVVSAKTVMVHVSHLRDKIGEATGGDKVISTVWGVGY 223 >gi|283771249|ref|ZP_06344138.1| two-component system OmpR family KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus H19] gi|283459454|gb|EFC06547.1| two-component system OmpR family KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus H19] Length = 231 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD A H +++ L + +NV + + + D I+LDLGL D G Sbjct: 4 KILIIEDDHATTHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLC 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R P+ ++S + ++ L +GA+DY++KPFN +EL ARIR I R ++ Sbjct: 64 LISEIR-QHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H ++ IV G LS++ +K+V + +HLT E+ ++ELLS K LT EM L +Y Sbjct: 123 HQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIY 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219 ++ E+ + V + LR+KLS K+ I+T GY Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGY 223 >gi|269839127|ref|YP_003323819.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269790857|gb|ACZ42997.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 231 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ + + L+S V + +E + D I+LDL L D G E Sbjct: 8 RVLVVEDEPPILRMLASNLRSHGMQVLTAATLREAMEKHATFRPDVILLDLRLPDGRGEE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++R +R+ + P+ +LS KV L+ GADDY++KPF +EL+ARIR +RR+ G Sbjct: 68 LIRQVRLTS-TVPIIVLSAYGEEGQKVAALEMGADDYLTKPFGVKELLARIRVALRRAAG 126 Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + G+L+++L + V V G ++ LT EY ++++L++ N LT LN ++ Sbjct: 127 KASGEPEVRVGELTLDLANRRVTVDGQQVQLTPTEYALLKVLAVHLNKVLTDSQLLNEVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + V++ +LR+KL AA Y+ T G GY L Sbjct: 187 GQAYGSEPHYLHVYVSRLRRKLGPAA---KYLVTEPGVGYRL 225 >gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium botulinum H04402 065] Length = 228 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 11/223 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ +A I++ L++ ++ V G++ E Y+ D ++LD+ L I G + Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K ST P+ +L+ DKV L+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 VLKWIR--KDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYN 124 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + L++++++ TV + I + KE++++ L+ KN T+E L + Sbjct: 125 VDNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEV 184 Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 + G D P + + +DV I +LR+KL GG N+ IETVWG GY Sbjct: 185 W-GYDYPGDSRTVDVHIKRLREKLE---GGPNWEIETVWGVGY 223 >gi|50086362|ref|YP_047872.1| osmolarity response regulator [Acinetobacter sp. ADP1] gi|49532338|emb|CAG70050.1| two-component response regulator [Acinetobacter sp. ADP1] Length = 254 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 15/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 RIL+++DD L ++ L+ + F V D ++ + + F I+LD L Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGF---VVKTAHDATQMDRLLQRELFSLIVLDFMLPVED 78 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 79 GLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + ++ G +++L +T+ +G + LT E+ +++ L LT+ Sbjct: 139 QVREVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTR 198 Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +N L GR+ + + IDV + +LR+ + + YI+TVWG GYV Sbjct: 199 DKLMN-LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVF 248 >gi|85715372|ref|ZP_01046354.1| Two-component transcriptional regulator, winged helix family protein [Nitrobacter sp. Nb-311A] gi|85697793|gb|EAQ35668.1| Two-component transcriptional regulator, winged helix family protein [Nitrobacter sp. Nb-311A] Length = 230 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L+IEDD+ S + ++K+ +V +L GE+G+ L ++D +++D L Sbjct: 1 MRLLIIEDDR---ESADYLVKAFREVGHVAELAGDGEEGLSLADGGDYDVLVIDRMLPKR 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G V+ LR I TPV ILS + ++D+V+GL++G DDY+ KP++ EL+AR+ + R Sbjct: 58 DGLSVIGCLRDKGIQTPVLILSALGQVDDRVKGLRAGGDDYLPKPYSFAELLARVEVLSR 117 Query: 118 RSRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R G A+ + GDL ++ + V + L +E++++E L +T+ M L Sbjct: 118 RHVGRAEETVYRVGDLELDRLSHRVVRGVEELTLQPREFRLLEYLMKHAGQVVTRTMLLE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++D +P+ +IDV I +LR K+ + + T+ G GY++R Sbjct: 178 NVWDYHFDPQTNVIDVHISRLRSKIDKGF-EQPLLHTIRGAGYMIR 222 >gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 222 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ + ++ L+ + V G G+ + D +ILDLGL D G E Sbjct: 4 RILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSARENSPDLVILDLGLPDFDGAE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR S P+ IL+ M +++ KV L++GADDY++KPF+ EELVAR++ +R + Sbjct: 64 IARRLRKTS-SVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQ- 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H + +I G L ++ + GH + L+ KE+ ++ L+ + +++ +++G Sbjct: 122 HGE-VISIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++DV + +R KL + G I TV G GY L+ Sbjct: 181 ELPSNSNVVDVHMANMRAKLRD-LDGYGIIRTVRGIGYALK 220 >gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH) [Anoxybacillus flavithermus WK1] gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH) [Anoxybacillus flavithermus WK1] Length = 244 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 127/228 (55%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D++ + + + L+ E + + + GE+ + L ++D I+LDL L G Sbjct: 11 VKILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDYDLILLDLMLPGKDGI 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + LR K +TPV +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 71 EVCKQLREKK-ATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRTA 129 Query: 121 GH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ ++V L+++ DA V GH + LT KEY+++ L+ + +E Sbjct: 130 NSPYVPTDTTARDVLVFPHLTIDHDAHRVTADGHEVSLTPKEYELLHFLAKSPDKVFDRE 189 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 190 QLLKEVWHYEFFGDLRTVDTHVKRLREKLNKVSPAAAKMIVTVWGVGY 237 >gi|116334617|ref|YP_796144.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116099964|gb|ABJ65113.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 229 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 128/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK +A +E+ +K+E + G++ + +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIAQLLEIYIKNEGYEPITAYNGKEALTKLHTTPDIALMILDIMMPEMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ ILS + DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 IEVVKEVR-KDSQIPILILSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L++N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 120 QDQVTDDSPDILDIGTLTINKDSHEVKTIAGLTISLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224 >gi|113952823|ref|YP_729925.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113880174|gb|ABI45132.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 240 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 17/235 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE----FDAIILDLGLTDI 57 +LL +D+ + +E+ L++E F V DGI L K E D +LD + I Sbjct: 8 VLLADDEVNIVTLLEMELQAEGFTVVT---ATDGISALKKLREPDTPVDLALLDWNMAGI 64 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ R LR +S PV I++ I+D++ L++GADD+ISKPFN E++AR++A++R Sbjct: 65 TGLDICRRLRETDVSLPVIIMTSRDEIDDRIAALETGADDFISKPFNVREVLARVKALIR 124 Query: 118 R--------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 R S + L+ G L++N +T + G + LT +E+ +++ L Sbjct: 125 RATFCKSTFSNEFSSDLLEIGKLALNRAERTCTINGTALILTVREFDLLDCFMRHPRQAL 184 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + H++ + ++DVF+ LRKKL A G + I+TV G G+ LR N Sbjct: 185 SRGQLIQHVWGDDYFGDENVVDVFVRYLRKKL-EAGGSERVIQTVRGVGFALRMN 238 >gi|163938261|ref|YP_001643145.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229009761|ref|ZP_04166983.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229131266|ref|ZP_04260170.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|163860458|gb|ABY41517.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228652204|gb|EEL08137.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228751521|gb|EEM01325.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 233 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ + + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R AK P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ TV V G + LT +E+ ++ELL + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGY 227 >gi|94312466|ref|YP_585676.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356318|gb|ABF10407.1| two component transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] Length = 234 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 127/236 (53%), Gaps = 15/236 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A +E L V V G + + D +ILDLGL I G Sbjct: 1 MRILLIEDDRQIASGVEAGLSRAGHQVRVVHDGVYATDHLLREQHDLVILDLGLPGIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R +TPV IL+ +EDK+ GL +GADDY+ KPF EL AR+R ++RRS+ Sbjct: 61 TLLARYRARNRTTPVIILTARDELEDKLSGLNAGADDYLVKPFALPELEARVRVLLRRSQ 120 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H ++ + G L ++ + + + V G + L+ +E+ ++ELL R+ ++K + Sbjct: 121 -HGEAAPERDVRLGRLRLSGNDRRMFVDGRPLELSPREFAVLELLLQRQGRVVSKAQLQD 179 Query: 177 HLY-------DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 HL +G D I+V++ ++RKKL + G I TV G GY+L+ A Sbjct: 180 HLATFAHPAGEGGDTVGDTAIEVYVHRVRKKLED---GDVEIVTVRGFGYLLQIRA 232 >gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 221 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 R+L+++DD A+ + L E F V EDG++ L + D +ILDL L + G+ Sbjct: 3 RVLVVDDDPAIREVLAAYLARERFEVLEA---EDGLQALEQAPGADLVILDLMLPGMDGW 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR P+ +L+ E++VRG + GADDY++KPF+ E+VAR+RA++RR Sbjct: 60 RVAQELRRDWPDLPILMLTARGEEEERVRGFELGADDYVTKPFSPREVVARVRALLRRV- 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V G L + A+ V ++G + L+ E+ ++ L+ T+E L ++ Sbjct: 119 -GLKDELVYGPLVIRPRAREVLLEGQPVALSRLEFDLLLTLARHPGMVFTRERLLERVWG 177 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E +++DV + LRKKL + A +IETV G GY RE+ Sbjct: 178 PGFEGVDRVVDVHVALLRKKLGDDAEHPRFIETVRGVGYRFRES 221 >gi|297624706|ref|YP_003706140.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165886|gb|ADI15597.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 223 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 6/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD ++ + L L+ F V + G G+ + D I+LDLGL D+ G E+ Sbjct: 7 ILIVEDDLDISRLLTLELEEAGFRVTACETGMRGLAAVRELNPDLIVLDLGLPDLSGAEI 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSRG 121 R +R STP+ IL+ + KV L +GADDY++KPF+ EEL+ARIR +R ++ G Sbjct: 67 ARRVRKTS-STPIIILTAADDVATKVEMLNAGADDYLAKPFHTEELLARIRVQLRHQNAG 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 AQ++ GD+ ++++ + + I L+ +E+ ++ L T++ +++ Sbjct: 126 SAQTV---GDMVIDINRRQLYWDKQEIRLSPREFDLLVYLCGSPGRVYTRQEIEQNVWGE 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 P ++DV I +R KL + AGG I TV G GY ++ Sbjct: 183 ELPPSSNVVDVHIANIRAKLRD-AGGYGLIRTVRGIGYAIK 222 >gi|212712243|ref|ZP_03320371.1| hypothetical protein PROVALCAL_03329 [Providencia alcalifaciens DSM 30120] gi|212684989|gb|EEB44517.1| hypothetical protein PROVALCAL_03329 [Providencia alcalifaciens DSM 30120] Length = 227 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED L+ ++ L + F V + G +L + + ++LD+ L + G Sbjct: 6 MRMLLVEDHDELSLWLQKALAASGFAVDIASDGYIADQLLQTENYSLVVLDVSLPRMNGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R TPV +L+ S + D+V+GL +GADDY++KPF+ EL ARIRA++RRS Sbjct: 66 DVLAQMRKRHQETPVLLLTANSDVADRVKGLNAGADDYLTKPFDIAELEARIRALLRRSH 125 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ GDL + + ++ + LT +EY ++ L R+ ++K ++ Sbjct: 126 GNINESQCFGDLCFH-EEGYFSLKMEPLGLTPREYAVLNTLFHRRGRPVSKTQLFEQVFS 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE ++ I++++ ++RKKL AG I T+ G GY L + Sbjct: 185 LSDEANLQSIELYVHRVRKKL---AGSDVNINTLRGLGYRLEQ 224 >gi|284035664|ref|YP_003385594.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283814957|gb|ADB36795.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 231 Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +A I+ L++++ V V G +G L FD +ILD+ L + G E+ Sbjct: 9 LLVVEDETKVALFIKKGLETQSLTVTVAADGREGKRLISSERFDLVILDVNLPFVSGLEL 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R P+ +L+ + S DK+ G ++GADDY++KPF+ ELVAR+RA++RRS Sbjct: 69 AEYIRTKNAQMPILMLTALDSTTDKLMGFEAGADDYLAKPFDFLELVARVRALLRRSAPP 128 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +Q ++ DL ++ K G I LT +E+ +++ L + +++ ++D Sbjct: 129 EESQPILRLADLELDRQQKVARRAGRTIDLTAREFALLDYLLRNQGRVVSRVDIAEQVWD 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +IDV++ LR K+ K I TV G GYVL+E Sbjct: 189 VGFDTGTNVIDVYVNYLRNKIDKGEPVK-LIHTVVGFGYVLKE 230 >gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 226 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 130/226 (57%), Gaps = 4/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+I+D++ + ++ L+ F+V V+ IEL + D ++LD L I G Sbjct: 1 MKILVIDDEEHILELLKFNLELSGFDVCVSTEANQTIELIGREKPDLLLLDWMLPKISGI 60 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 ++L+ +R + PV +L+ + +DK++GL GADDYI+KPF+ +EL+ARI ++RR Sbjct: 61 DILKKIRQDEDIYDLPVIMLTAKNMEDDKIQGLNVGADDYITKPFSIKELMARINTVLRR 120 Query: 119 SR--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R +Q +I G++ +N D + V G ++ LT KE+++++LL + L ++ L Sbjct: 121 YRISDKSQPVIEAGNIVLNTDQYKLTVDGLKVDLTRKEFELLKLLMENRGKVLKRDYLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E + +DV I LRKKL +N I+T+ G GY ++ Sbjct: 181 KVWGYEFYGETRTVDVHIRHLRKKLGLDETSENGIDTIRGLGYKMK 226 >gi|294085650|ref|YP_003552410.1| DNA-binding response regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292665225|gb|ADE40326.1| DNA-binding response regulator [Candidatus Puniceispirillum marinum IMCC1322] Length = 221 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED LA S+ + N + + + EL +D ++LD+ L D G Sbjct: 1 MKILIVEDTAKLAKSLADHFTLQGHNADIAETVKLAEELRSLTHYDIMLLDIMLPDGDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR+LR KIS P+ +++ S + DKV L GADDYI KPF+ EL AR RA++RR Sbjct: 61 TFLRSLRSQKISLPIIVMTARSEVSDKVDLLDIGADDYIIKPFDFAELEARCRAVLRRHT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q+ +V GD+++N ++ L +E +++E+ + TKE + +++ Sbjct: 121 GTTQTQLVFGDIALNPLTAELQTPETSHMLRNRELRLLEIFMNAPDILFTKEQLTDRIFN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + I+V+I ++RKKL G YI+T+ G GY L ++ Sbjct: 181 ISETISENAIEVYIARVRKKL---VGCNVYIQTMRGIGYKLTQS 221 >gi|291563054|emb|CBL41870.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 235 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDDK +++ I+ +L++ N++V V G + + D +ILDLGL D+ G + Sbjct: 6 RVLVVEDDKRISNFIKTVLEANNYDVIVAQTGAEAYSMVTSQCPDVVILDLGLPDMDGMK 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L+ +R + PV ++S + DKV L GADDYI+KPF EL+ARIR +R +R Sbjct: 66 ILQGVREWS-AMPVIVVSARTHERDKVEALDLGADDYITKPFGTSELLARIRTAIRHTRS 124 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G + +G L+++ D V + G LT EY+++ LL +T + Sbjct: 125 GIPNQPGGQTGVFKSGGLTIDYDKHRVFIDGVDAGLTQNEYKIVSLLGKYAGKVMTYDYI 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + + +I+ V + +R+K+ YI T G GY + E Sbjct: 185 IKEIWGPNMKNDNRILRVNMANIRRKIEKNPAEPQYIFTEVGVGYRIVE 233 >gi|229165243|ref|ZP_04293033.1| Two-component response regulator [Bacillus cereus AH621] gi|228618238|gb|EEK75273.1| Two-component response regulator [Bacillus cereus AH621] Length = 233 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ + + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R AK P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ TV V G + LT +E+ ++ELL + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGY 227 >gi|182418119|ref|ZP_02949419.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum 5521] gi|237666207|ref|ZP_04526194.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377937|gb|EDT75477.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum 5521] gi|237658297|gb|EEP55850.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum E4 str. BoNT E BL5262] Length = 230 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDDK + + I L LK+ +N G +G+ L + D ++LDLGL D G E Sbjct: 5 RILIIEDDKYILNFISLSLKTSGYNFQCASTGLEGLSLFYSNKPDIVLLDLGLPDSDGIE 64 Query: 62 VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 +++++R +IS P+ ++S DK+ L SGADDY++KPF+ EL+ARIR + R Sbjct: 65 IIKSIR--EISECPIIVVSARGQEIDKISALDSGADDYVTKPFHMGELLARIRVVERKMN 122 Query: 118 RSRGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + + + D L+++ + + V V + IHLT EY+++ L+ K LT L Sbjct: 123 RDKVPVKDELFKCDYLTIDYEKRKVLVDDNEIHLTPIEYKLLTLMVANKGKVLTHNYILK 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + K I VF+ LR+K+ +I T G GY Sbjct: 183 EVWGYGENGDSKSIRVFMASLRRKIEKNTAKPRFILTEVGIGY 225 >gi|291541568|emb|CBL14678.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 233 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+ + + I LK+ +++ + G I + D ++LDLGL DI G +V Sbjct: 6 VLVVEDDRPIRNLIVTTLKAHDYHYLTAENGHSAIIEATSHNPDIVLLDLGLPDIDGTQV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + ++R + + P+ ++S S +DK+ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IESIR-SWSNMPIIVISARSEDKDKITALDAGADDYLTKPFSIEELLARLRVTQRRLLLL 124 Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G A S + G L ++ A + G +HLT EY+++ LLS LT Sbjct: 125 QASGDADSPVFQNGKLKIDYAAGCAYLNGEELHLTPIEYKLLCLLSHNVGKVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E ++ + VF+ LRKKL YI+T G GY Sbjct: 185 QIWGSSWENDIASLRVFMATLRKKLEPQRDCPQYIQTHIGVGY 227 >gi|238754271|ref|ZP_04615628.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC 29473] gi|238707518|gb|EEP99878.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC 29473] Length = 224 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRILL+ED L+H ++ L F V D+ DGIE L + ++ ++LD+ L + Sbjct: 1 MRILLVEDHPELSHWLQKALTHVGFAV---DVANDGIEADHLLQHEKYALVVLDVALPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G E+L LR + PV +L+ + + D+V+GL SGADDY++KPF +EL ARIRA++R Sbjct: 58 NGLELLARLRKRGQTLPVLLLTARTDVADRVKGLNSGADDYLTKPFELDELEARIRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G Q + G L+ + D + + LT +E ++ L R+ + K+ Sbjct: 118 RSVGVTQQALQFGSLTYH-DEGYFLLDNKPLALTPRESAVLTTLMHRRGRPVAKQQLFEQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ DE + I++++ ++RKKL G I T+ G GY L N Sbjct: 177 IFTLSDEANPESIELYVHRVRKKLQ---GTDVAIITLRGLGYSLECN 220 >gi|260589379|ref|ZP_05855292.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM 20583] gi|331082774|ref|ZP_08331897.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540460|gb|EEX21029.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM 20583] gi|330400393|gb|EGG80035.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium 6_1_63FAA] Length = 224 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD L + + + + V G++ IE + D I+LD+ + + G E Sbjct: 4 KILLVDDDTELVKMLSKYFERKKYRVITAQNGKEAIEKLQTAP-DIILLDINMPQMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R KIS P+ L+ ED+V GL SG DDYI KPF+ +EL ARI A ++R + Sbjct: 63 VCRKIR-DKISCPILFLTARVEEEDRVNGLLSGGDDYILKPFSLKELDARITAHLKREQR 121 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H+Q+ G+L ++ K V++ I T EY++IELLS KE Sbjct: 122 HSQNTEFRFHGELCIDYGQKNVQINEEIIEFTKLEYEIIELLSTHPGQVFDKERIYEITC 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + ++I I ++RKK+ N + + YIETVWG GY Sbjct: 182 GYDAEGDSRVITELIRRIRKKIGNYSDTE-YIETVWGMGY 220 >gi|138894005|ref|YP_001124458.1| transcriptional regulatory component of sensory transduction system [Geobacillus thermodenitrificans NG80-2] gi|196250325|ref|ZP_03149018.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134265518|gb|ABO65713.1| Transcriptional regulatory component of sensory transduction system [Geobacillus thermodenitrificans NG80-2] gi|196210214|gb|EDY04980.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 234 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD++LA IE L+ E + V E+G L FD IILD+ L D G++ Sbjct: 3 KLLLVEDDESLALGIEFALQDEGYEVCRASTLEEGKALFASQSFDLIILDINLPDGSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R A P+ L+ + + + GL+ G DDYI+KPF ++RI+A++RRS G Sbjct: 63 LCKHIR-ATSDVPILFLTALDEEVNIILGLELGGDDYITKPFGVGVFLSRIKALLRRSAG 121 Query: 122 H-AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H A +I+ +G ++V+ A TVE G +I L+ +EY+++ L R T ++++ L L Sbjct: 122 HRATGMILKSGTITVDPLAATVEKNGQKISLSAQEYKLLLTLMDRPCTVMSRDEILRELA 181 Query: 180 DGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +G + + + V+I +LR+K+ + YI T G GY Sbjct: 182 EGTEAFFDENTLAVYIRRLREKIEDDPKEPQYIVTQRGLGY 222 >gi|332308798|ref|YP_004436648.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176127|gb|AEE25380.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 223 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+EDD +A +I + L + V + I FD +LD+ L D G Sbjct: 1 MKILLVEDDPIIADAICVYLGNAIMQVTHAATLSEAIHYVAVCSFDICLLDISLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ +R K++ P+ +L+ +IEDKV+GL GADDY++KPF+ EEL+ARI+++ RR Sbjct: 61 ELIKVVRKKKLALPIILLTAKDAIEDKVQGLNDGADDYVTKPFDFEELMARIKSVYRRFT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + G+L + ++K ++ R+ L+ E +++ N L + ++LY Sbjct: 121 HQQNSYLQYGELKYDSNSKVAQLGDKRLALSASELKLLVAFLSNPNRILDENHLKDYLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++V + LRKK+ GKN I T G G+ L Sbjct: 181 VNEDVSSNALNVHLFNLRKKV-----GKNIIVTERGLGFRL 216 >gi|269794287|ref|YP_003313742.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096472|gb|ACZ20908.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 244 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 15/233 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+A +I L +E + V G G+E DA++LD+ L I G EV Sbjct: 17 ILIVEDEPAIATAIAQRLGAEGWRTEVARDGLSGVEAAARMLPDAVVLDVMLPGIDGLEV 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R ++ A+ P+ +L+ D + GL GADDY++KPF+ ELVAR++A++RR Sbjct: 77 CRRIQ-AERPVPILMLTARDDETDMLIGLGVGADDYMTKPFSMRELVARLKALLRRVDRA 135 Query: 123 AQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ+ +V GD+ ++ + V IHLT E++++ +L+ T T+E Sbjct: 136 AQASSAPDGAEPPMVIGDVVIDRAQRRVHRAEQEIHLTPTEFELLVMLASSPKTVQTRER 195 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L ++D D + +D I LR+KL G + I TV G GY A Sbjct: 196 LLAEVWDWADASGTRTVDSHIKALRRKL-----GADLIRTVHGVGYAFEPPAS 243 >gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E + D +ILD+ L D G+ Sbjct: 3 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWN-EQPDVLILDVMLPDTDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR R Sbjct: 62 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVR 121 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G+L + + V V G I LT +E+ + +L ++ L Sbjct: 122 KEEVSSTHEVIRAGELVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ +I+T++G GY L Sbjct: 182 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EHIKTIYGVGYKL 223 >gi|209550917|ref|YP_002282834.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536673|gb|ACI56608.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 225 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ ALA + +L+ V V G + FD +ILDL L ++ G Sbjct: 1 MRILLTEDNTALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVILDLNLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R + V IL+ + E++V+GL GADDY+ KPF+ E AR+R ++RR Sbjct: 61 DVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDISEFEARVRVLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G +S +L+++ + + +E ++E+L +R + KE + L Sbjct: 121 GLRSATVSFGGISFDLNSRAFSAGATPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ I+ ++ +LRK+LS ++T G GY L Sbjct: 181 FDDDISSNAIEQYVSRLRKRLSPHG---LTVKTARGIGYYL 218 >gi|158336595|ref|YP_001517769.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306836|gb|ABW28453.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 231 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 13/230 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 MR+LL+ED+ L +I+ L E Y+ D +DG E + E + I D L Sbjct: 1 MRVLLVEDEPDLGAAIQRTLTQE---AYIVDWAKDGREAWGYLESQWTQYTLAIFDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G ++ + LR + PV +L+ ED GL +GADDY+ KPF K EL+AR+RA+ Sbjct: 58 GLSGIDLCQRLRAQQSPLPVLMLTAKDQPEDTATGLDAGADDYLVKPFRKIELLARLRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEV----QGHRIHLTGKEYQMIELLSLRKNTTLTK 171 RRS + G L+++ V + QG + LT KE+Q++E +++ Sbjct: 118 QRRSPHFQPQQLQVGPLTLDYGTHNVSILNQEQGQSVLLTHKEFQLLEYFMQHPRQIVSR 177 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + LN L+ + ++ + +LR+KL+ G + IETV+G GY L Sbjct: 178 DQILNQLWGAEADTISNVVAALMRQLRRKLAE-LGCDDAIETVYGVGYRL 226 >gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO] gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family [Thermotoga lettingae TMO] Length = 263 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD ++ + L E ++V E+ +++ D I+D+ L + GFE Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++R LR + +TPV LS DKV GL+ GADDYI+KPF+ E++ARI+A+ RR Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + AQ IV L ++++ V+V ++ LT E++++ L+ + ++++ Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K+E Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKEE 263 >gi|304317190|ref|YP_003852335.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778692|gb|ADL69251.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 235 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 140/228 (61%), Gaps = 10/228 (4%) Query: 3 ILLIEDDKALAHSIELM---LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 IL+IED+ AH +EL+ L+++ +NV +TD G++G+E C+ D ++LDL L DI G Sbjct: 5 ILVIEDE---AHILELLRYNLEAQGYNVILTDNGKEGLEKCRELSPDLVLLDLMLPDIDG 61 Query: 60 FEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 +V + ++ + + P+ +L+ S DK+ GL+ GADDYI+KPF+ EL+ARI+ ++R Sbjct: 62 IDVCKKIKSDEHLKNIPIIMLTAKSEEFDKILGLELGADDYITKPFSIRELLARIKVVLR 121 Query: 118 RSRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RS+ + +I GD++++ + V + LT KE+++++LLS + LT++ L Sbjct: 122 RSKNETEENEIIKFGDITIDTEKHIVYKGNEILDLTLKEFELLKLLSKNRGKVLTRDYLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ E + +DV I LRKK+ + YIETV G GY L++ Sbjct: 182 DKVWGYEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKLKD 229 >gi|17547783|ref|NP_521185.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430088|emb|CAD16773.1| probable response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 243 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 18/240 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD LA + L + F V V G+ + + + +ILDL L + G E Sbjct: 9 RVLLIEDDDRLAQLVSEYLGNYEFTVEVVRRGDIAVAAVREHRPALVILDLMLPHMDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A PV IL+ D+V GL+ GADDY+ KP LVAR RA++RR Sbjct: 69 VCRRIR-AFSRVPVLILTARVDTYDQVAGLEIGADDYVLKPVEPRLLVARARALLRRVAS 127 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + +V G+L+++ +TV +G + L E+ ++ +L+ T L+++ Sbjct: 128 AMPAAEPATPRDDTLVFGELAISPPNRTVTWRGQPVELKTAEFNLLLILARAAGTVLSRD 187 Query: 173 MFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L L +DG D + +D I +LR++ +A+ + I+T+WGRGY+ +A +E Sbjct: 188 DILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 243 >gi|268593356|ref|ZP_06127577.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM 1131] gi|291311053|gb|EFE51506.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM 1131] Length = 232 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV + GE ++ D ++LD+ + G E Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQID-SSIDLLLLDVMMPKKNGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S DKV GL+ GADDY+ KPFN ELVARIRA++RRS Sbjct: 62 TLKELRQIH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSNW 120 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ ++ L +N + + LTG E+ ++ LL+ +++E Sbjct: 121 SEQTQGDNSNTPVLQVDKLQLNPGRQEASFDDEILDLTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G+ + +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLM 228 >gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 11/223 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ +A I++ L++ ++ V G++ E Y+ D ++LD+ L I G + Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R K ST P+ +L+ DKV L+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 VLKWIR--KDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYN 124 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + L++++++ TV + I + KE++++ L+ KN T+E L + Sbjct: 125 VDNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEV 184 Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 + G D P + + +DV I +LR+KL GG N+ IETVWG GY Sbjct: 185 W-GYDYPGDSRTVDVHIKRLREKLE---GGSNWEIETVWGVGY 223 >gi|152990660|ref|YP_001356382.1| two-component response regulator [Nitratiruptor sp. SB155-2] gi|151422521|dbj|BAF70025.1| two-component response regulator [Nitratiruptor sp. SB155-2] Length = 222 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 131/225 (58%), Gaps = 10/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 M IL IEDD + I+ ++EN +V T E+GI E+ Y DA+ILD L D Sbjct: 1 MYILCIEDDSEIQKIIKENFRNENIDVEFTYSLEEGIYKLEMNSLY--DAVILDRVLPDG 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L+ + +I+ P ILS + S+E+K+ GL GA DY++KPF+ EL+ R++ I++ Sbjct: 59 DGITLLKYMEQKQINIPCLILSVLGSVENKIEGLSLGAYDYLTKPFDIRELLIRVKNIIK 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++ G++S+NL ++ V V+ I LT +EY++++LL +N + K ++ Sbjct: 119 IRYNIQTNIVRIGNVSINLFSRKVYVKDKNIKLTPQEYKILKLLMTNRNKVIEKSEIMDR 178 Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++E I+DV + +LRKKL G +++I+ + GYV+ Sbjct: 179 LGIEQNESHNSNIVDVLVYRLRKKL----GKQDFIQNIKKIGYVI 219 >gi|150018489|ref|YP_001310743.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904954|gb|ABR35787.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 226 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +IEDD + + + LK + + +++ G DG+ + +D +ILDL L G E Sbjct: 4 RISIIEDDLEICNLLREFLKESGYEIKISNTGIDGMRELRTLTYDLVILDLMLPYKSGDE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR + PV +LS + KV L+ GADDY++KPF+ E++AR+ + +RR Sbjct: 64 ILRELRSFS-NIPVIVLSAKDMVHTKVDLLRLGADDYVTKPFDLNEILARVESNLRRCSS 122 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S++ D+++ + K V V G+ + LT KEY ++ LL +K + Sbjct: 123 DLNIKKSILTYKDITLYEEEKKVIVNGNTLVLTSKEYGILFLLLSHPQKVFSKANLFESI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E ++V I +R KL +A + YIET+WG GY L+ Sbjct: 183 WNEEYFSEDNTLNVHISNIRNKLKSANANEEYIETIWGMGYKLK 226 >gi|134098396|ref|YP_001104057.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291006902|ref|ZP_06564875.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911019|emb|CAM01132.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 233 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED++ LA +I L+ E V + GE G E +D I+LD L + G Sbjct: 11 VRILVVEDEQPLADAIARGLRREGMAVDIAYDGESGQEKASITRYDVIVLDRDLPGMSGD 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R++ + T V +L+ ++ D+V GL GADDY++KPF EL AR+RA+ RR+ Sbjct: 71 ELCRSVVTSGQLTRVIMLTASGTVADRVEGLSLGADDYLAKPFAFAELTARVRALGRRAT 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 L+ DL+++ +TV G I LT KE+ ++E+L ++ E L ++D Sbjct: 131 PAVPPLLTARDLALDPARRTVSRSGGEIELTRKEFGVLEVLLGAGGAVVSSEELLERVWD 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P + V + LRKKL G I+TV G GY Sbjct: 191 ENADPFTTTVRVTMMTLRKKL----GEPGVIDTVVGSGY 225 >gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 235 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 127/228 (55%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I++++D+ ++A ++ L+ F V G G++L + + I+LDL L ++ G E Sbjct: 4 KIIVVDDELSIATLLKFNLEQAGFVVETAHDGMTGLKLAEKQDAALIVLDLMLPELDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR KI+TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR Sbjct: 64 VCKRLRQQKINTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRMNQ 123 Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 I+ GD+ + D R+ LT KE++++ L+ K LT++ L Sbjct: 124 QTVAEEVTDGTILIGDVKIVPDNYEAFKAEERLELTPKEFELLVYLAKNKGRVLTRDQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++ + +I+DV I +R+K+ YI+T+ G GY + E Sbjct: 184 SAIWNYDFVGDTRIVDVHISHVREKIEPNTKKPIYIKTIRGLGYKMEE 231 >gi|220908331|ref|YP_002483642.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] gi|219864942|gb|ACL45281.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 652 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 3/236 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD L + L+ + + V G G + + +D I++D+GL G Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR P+ +++ + D++ GL +GADDY++KP + EL AR+RA++RR Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+L ++ + V ++LT KEY ++EL ++ + HL+ Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236 D P + + + LR+KL AAG ++IE ++G GY R N D + ++A Sbjct: 181 FDDPPLEESVKAHVKGLRQKL-KAAGAVDWIENIYGIGY--RLNPPDSEQKSSDSA 233 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 8/125 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF---DAIILDLGLTDI 57 + +LL++DD I L+L+ + +++T + + +EL D +ILD+ + Sbjct: 380 VNVLLVDDDPIFLEQIVLLLQP--WGIHLTGIN-NPLELWSVLPSTRPDLLILDVEMPQT 436 Query: 58 PGFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 G E+ ++LR S P+ L+ E + GADD+++KP EL+ RI Sbjct: 437 SGIELCQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINR 496 Query: 116 VRRSR 120 + R+R Sbjct: 497 LERTR 501 >gi|166031390|ref|ZP_02234219.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC 27755] gi|166028795|gb|EDR47552.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC 27755] Length = 229 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++ +A + L+ F V V + GE G+E E+ ILDL L + GFE Sbjct: 3 KILIVEDEETIADLEKDYLELSGFEVEVANDGETGLEKALKDEYSLFILDLMLPGVDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K +TP+ ++S DK+RGL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKKIREEK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++ A+ V V T KE+ ++ L+ N TKE Sbjct: 122 LTGSAVEKNKIIEIRGLRIDTTARRVWVNDVEKTFTTKEFDLLTFLASHPNHVYTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGYRFK 228 >gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 229 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ L + + L+ E F+V + G G+++ + D +ILD+ + ++ G+E Sbjct: 8 RILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQHPDLMILDVMMPEMDGWE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +L+ + +D V GL+SGADDY++KPFN +EL ARIRA++RR Sbjct: 68 VCRRLREFS-QMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126 Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G++ ++ + V V+G + LT EY ++ LL+ L E L ++ Sbjct: 127 PNRPIVAGGGEIMIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + V+I LR+K+ + T WG GY L Sbjct: 187 HEYTKDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRL 227 >gi|91788575|ref|YP_549527.1| osmolarity response regulator [Polaromonas sp. JS666] gi|91697800|gb|ABE44629.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 245 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 120/232 (51%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIP 58 +IL+++DD + + L E F V L ED L + DA I+LDL + Sbjct: 12 KILILDDDARIRDLLRRYLAQEGFEVI---LAEDSKALNRIMLRDAVDLIVLDLMMPGED 68 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR A TP+ +L+ D++ GL+ GADDY++KPFN EL+ARI A++RR Sbjct: 69 GLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRR 128 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + Q +I G S ++ +T+ G + LT E+ M++ L L+ Sbjct: 129 RPTAEVPGAPSSDQEVITFGPFSFDMGLRTLHKNGEELPLTTGEFAMLKTLVRHPRQPLS 188 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L L GR+ EP + +DV + +LRK + A YI+TVWG GYV Sbjct: 189 REK-LAQLARGREFEPFDRSLDVQVSRLRKLIEVDAAVPRYIQTVWGIGYVF 239 >gi|170023956|ref|YP_001720461.1| DNA-binding transcriptional regulator PhoP [Yersinia pseudotuberculosis YPIII] gi|1617255|emb|CAA47148.1| phoP [Yersinia pseudotuberculosis] gi|49617497|gb|AAT67459.1| nonfunctional two-component system response regulator [Yersinia pseudotuberculosis] gi|169750490|gb|ACA68008.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] Length = 223 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + ++ V D ED E F + D I+DLGL Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + + P+ +L+ S +DKV L++GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + V +I LT EY +IE L ++K+ + Sbjct: 118 RNIGLASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIEPLIRNAGKVVSKDTLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKKL G+ I T+ G+GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLLAEHQGE-VITTIRGQGY 218 >gi|29827189|ref|NP_821823.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29604287|dbj|BAC68358.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 228 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + +++L L E F V + + GE+ +E I+LD+ + + G EV Sbjct: 1 MLVVDDDPGVREALDLGLGLEGFTVRLAEDGENALEQVADRLPSVIVLDVTMPGLSGVEV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 +++LR + PVC+LS ++D+V GL + ADDY+ KPF+ EL AR+ AIVR Sbjct: 61 VQSLRAQGRTLPVCMLSARDEVDDRVAGLAARADDYVVKPFSIAELAARLHAIVRLHAIV 120 Query: 120 RGHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R H + + V GD+++ + G +HLT +E+ ++ L+ R L++ L Sbjct: 121 RLHESTAVRPLVIGDVTIEPARRVAARAGRDLHLTTREFDLLLALAHRPGQVLSRAQLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + + ++DVFI LRKKL A G ++TV G G VLR Sbjct: 181 QVWGYTWDVDTNVVDVFIGYLRKKL-EADGRPRILQTVRGIGLVLR 225 >gi|4530445|gb|AAD22036.1| response regulator PnpR [Streptococcus pneumoniae] Length = 250 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 9/228 (3%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 L+ + + + ++ L E F+ + G + L + FD I+LD+ L + G EV + Sbjct: 22 LVHNSCXILNLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGMEVCK 81 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-- 122 LR + TP+ ++S S DKV L+ GADDY++KPF+ EL+AR++A++RR++G Sbjct: 82 RLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGEQE 141 Query: 123 -------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A + G L V + V + LT KE++++ L N TLT+E L Sbjct: 142 GDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRERLL 201 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E +++DV I KLR+K+ + +I T+ G GY +E Sbjct: 202 ERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 249 >gi|308205569|gb|ADO19044.1| two component transcriptional regulator [Nostoc flagelliforme str. Sunitezuoqi] Length = 232 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+ L + +L E + V G G E + +D +ILD L G Sbjct: 1 MRILLVDDEVELTEPLSRLLTREGYTVDAAYDGTSGNEHAQTGSYDLLILDWMLPGKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR +TPV L+ +++D+V+GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 EICQQLRRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSG 120 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ DL ++ + + QG I L+ KE Q+++ +T + Sbjct: 121 SQTYETTTGRLIVADLELDCENQVAYRQGRIIELSQKESQLLQYFMEHTGQLMTHAQIME 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +L+ ++P +I I LR+K+ I TV+G+GY Sbjct: 181 NLWQEEEQPSSNVIAALIRLLRRKI-EVGKETTLIHTVYGKGY 222 >gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 240 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL +ED+ A+ + L+ E +NV + G ++ FD IILD+GL D GFE Sbjct: 6 QILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQNGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K TP+ L+ D+V GL+ GADDY +KPF+ E+VARI+AI RR Sbjct: 66 VCKQLR-QKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEI 124 Query: 122 HAQSL------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 AQ++ + + + N + ++ G + LT EY+++ LL Sbjct: 125 QAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPEKVF 184 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ ++H+++ + + +D I LR+KL + I T G GY L Sbjct: 185 SRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSL 236 >gi|238758418|ref|ZP_04619595.1| Two-component response regulator of virulence determinant [Yersinia aldovae ATCC 35236] gi|238703322|gb|EEP95862.1| Two-component response regulator of virulence determinant [Yersinia aldovae ATCC 35236] Length = 223 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + ++ V D ED E F + D I+DLGL Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDTKEADYFLQEHAPDIAIIDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + + P+ +L+ S +DKV L++GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + V +I LT EY +IE L ++K+ + Sbjct: 118 RNIGLASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LY + E IDV + +LRKKL G+ I T+ G+GY N Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLLAEHEGE-VITTIRGQGYRFDAN 223 >gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 226 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++++A + +L+ E F+ + G D +E D ++LDL L + G E Sbjct: 3 RVLIVEDEESMAEPLAFLLRKEGFSTEIATNGPDALETFDRVGADIVLLDLMLPGMSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR + + PV +++ S DKV GL+ GADDYI+KP++ EL+ARIRA++RR Sbjct: 63 VCKQLR-GRGAVPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARIRAVLRRGAD 121 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H+ ++ G + +++D V V G L KE+ ++E L LT+ ++ Sbjct: 122 ADDAHS-PVLQAGPVRMDVDRHVVSVHGVPTSLPLKEFDLLEYLIRNAGRVLTRGQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + K +DV + +LR K+ Y+ TV G GY L Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPAEPRYLVTVRGLGYKL 224 >gi|254437616|ref|ZP_05051110.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] gi|198253062|gb|EDY77376.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] Length = 221 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ LL+ED+ LA++I + + V D I + E+D I+LD+ L D G Sbjct: 1 MKYLLVEDNLELANAICSRIGLDGHTVDHAARMADAIAFAQTGEYDLILLDIMLPDGDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ R AK TPV +L+ S + D++ L GADDY++KPF+ EL AR RA++RR Sbjct: 61 SFLKQHRAAKNDTPVIVLTARSEVSDRISLLDLGADDYVTKPFDHAELQARCRAVLRRKA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +Q+ I GD+ + + V+G+ I+L +E +++E+L K K+ ++ LY Sbjct: 121 GASQTTIKVGDVEFDPVGGHLTVKGNVINLRNRELRLLEILMNAKGQVFHKQKLVDRLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V++ +LR+ L G I T+ G GY L Sbjct: 181 YDDDVSENAVEVYVGRLRRHLE---GSAVQITTLRGLGYRL 218 >gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ L + + L+ E F+V + G G+++ + D +ILD+ + ++ G+E Sbjct: 8 RILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMVREQHPDLMILDVMMPEMDGWE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV +L+ + +D V GL+SGADDY++KPFN +EL ARIRA++RR Sbjct: 68 VCRRLREFS-QIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126 Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G++ ++ + V V+G + LT EY ++ LL+ L E L ++ Sbjct: 127 PNRPIVAGGGEIVIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + V+I LR+K+ + T WG GY L Sbjct: 187 HEYTRDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRL 227 >gi|108803229|ref|YP_643166.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764472|gb|ABG03354.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 234 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 11/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPGF 60 R+L++EDD A+ +E L E GE +EL FD ++LD+ L + G Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 61 EVLRALRVAKI---STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 V R LR + + PV +L+ V GL+ GADDYI+KPF+ +L +R+RA +R Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 118 RSRGHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R R +AQ+ L G L ++L + V +G ++ LT +E++++ LL+ ++ Sbjct: 123 RQRMNAQASPEQRKLEFPG-LEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++HL+ G E + DV I LR+K+ YI+TV G GY E Sbjct: 182 EQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >gi|320449570|ref|YP_004201666.1| two-component response regulator [Thermus scotoductus SA-01] gi|320149739|gb|ADW21117.1| two-component response regulator [Thermus scotoductus SA-01] Length = 227 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 119/232 (51%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD +A +EL LK F V G +G+ + + D ++LDLGL D+ G E Sbjct: 3 RILLIEDDAEVARLVELELKEAGFTVEWAKSGMEGLVRHREKKPDLVVLDLGLPDLDGAE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A TP+ +L+ ++E KV L GADDY+ KPF+ EL+ARI+ +R G Sbjct: 63 VARRIR-ATDDTPILVLTAQDAVERKVGLLSDGADDYLVKPFHPAELLARIQVQLRHKEG 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180 ++ G L + + V + L+ KE+ ++ LL R +E ++ Sbjct: 122 --SEVLSVGKLELYPKRRQVFFGETEVRLSPKEFDLLHLLMSRPGRVFPREEIEEKIWGK 179 Query: 181 --GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 GRD ++DV + LR KL AG Y+ TV G GY +R +E Sbjct: 180 PLGRDS---NVLDVHVANLRAKLRE-AGAYGYLRTVRGLGYAVRPGRGEEET 227 >gi|319762606|ref|YP_004126543.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330824696|ref|YP_004387999.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117167|gb|ADU99655.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329310068|gb|AEB84483.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 227 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD + +++ L V G + + + DA++LDL L + G Sbjct: 1 MQLLLVEDDATMQATLQRSLARRGMAVTALADGRAALAEWRAHPPDAVVLDLTLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 +VL R + TPV +L+ ++ D+V GL +GADDY+ KPF+ +EL AR+RA+VRRS Sbjct: 61 QVLEQARAGGLRTPVLLLTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALVRRSG 120 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A S + G +S ++ + G + LT +E ++ L + +TKE Sbjct: 121 DAMEAKSAASALAMGAISYEKESGIIYAHGAPMDLTPRELALLRALLAQPGHAVTKERLY 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ G+ E + + I+V +LRKKL AG + T+ G GY+L+ A Sbjct: 181 ELVFPGQSEVQYEAIEVVAYRLRKKL---AGTGVVLMTLRGLGYLLKPEA 227 >gi|229101075|ref|ZP_04231844.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228682343|gb|EEL36451.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 233 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R +K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ TV V G + LT +E+ ++ELL + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGY 227 >gi|126650356|ref|ZP_01722584.1| two-component response regulator [Bacillus sp. B14905] gi|126593006|gb|EAZ86988.1| two-component response regulator [Bacillus sp. B14905] Length = 241 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 8/237 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D+ + +E+ L+ ENF N+ G+D ++L K +D I+LD+ L DI GF Sbjct: 6 KILIVDDEVGILKLLEITLRKENFINIDAASTGKDTLQLVKENHYDIILLDIMLPDISGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ +R +TP+ +S S+ DK+ GL G DDYI+KPFN E+VARI+ I+RR + Sbjct: 66 ELCTEIR-KHTNTPIIFVSARSTDFDKLTGLGIGGDDYITKPFNPLEVVARIKVILRRQK 124 Query: 121 ----GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H Q S G ++N ++ T+ V + T KE +++ N T Sbjct: 125 MYESSHQQQSSKFDFGYFALNPESATLIVNNQLVDCTAKELELLHFFCKNPNRIFTTSQL 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ E K + + I KLRKKL + I + G GY +D CE Sbjct: 185 YEFVWGNDVYGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKFIPPKEDSLCE 241 >gi|319936869|ref|ZP_08011281.1| two-component system response regulator [Coprobacillus sp. 29_1] gi|319808137|gb|EFW04709.1| two-component system response regulator [Coprobacillus sp. 29_1] Length = 231 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+K + IE+ L E ++V +E + Y+ D +ILD+ + +I G + Sbjct: 6 ILVIDDEKEITDLIEIYLSQEGYHVEKRYNALTLLEDIRTYQIDLVILDVMMPEINGIQA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+ +R K + PV I+S ++ DK+ GL +GADDY+SKPFN ELVAR+++ +RR + Sbjct: 66 LKMIR-EKYNIPVIIVSAKTADNDKIEGLLTGADDYVSKPFNAMELVARVKSQLRRFQVF 124 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I DL ++ K+V + + LT EY+++ LL+ + T + E Sbjct: 125 NKPINDSSHIIEASDLIIDTQKKSVTLDNQSLALTRIEYEILVLLASQPGTVFSIEDIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + I V I KLR+K+ +I+TVWG GY Sbjct: 185 KIWHEKSTNSNNTIMVHIRKLREKIERQPRNPRHIKTVWGIGY 227 >gi|253991781|ref|YP_003043137.1| DNA-binding transcriptional regulator CpxR [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638556|emb|CAR67177.1| transcriptional two-component response regulatory protein cpxr [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783231|emb|CAQ86396.1| transcriptional two-component response regulatory protein cpxr [Photorhabdus asymbiotica] Length = 231 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E NV + GE ++L D ++LD+ + G Sbjct: 3 KILLVDDDRELTSLLKELLEMEGLNVVIAHDGEQALKLLD-ESIDLLLLDIMMPRKNGIA 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR+ TPV +L+ S D+V GL+ GADDY++KPFN ELVARIRAI+RRS Sbjct: 62 TLKELRLHH-QTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + + +L +N + + LTG E+ ++ LL+ +++E Sbjct: 121 SEQQQTDNSPATLQVDNLQLNPGRQEASFANQILDLTGTEFTLLYLLAQHLGQVVSREHL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G+ + +T+ GRGY++ Sbjct: 181 SQEVLGKRLTPFDRAIDMHISNLRRKLPEREDGQPWFKTLRGRGYLM 227 >gi|158422753|ref|YP_001524045.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158329642|dbj|BAF87127.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 223 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD L + L + V GE+G L +DA++LD+GL + G Sbjct: 1 MRLLVIEDDPDLNRQLVNALGEAGYAVDTAFDGEEGHFLGDSEPYDAVVLDIGLPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R A PV IL+ DKV+G +GADDY++KPF+ EE++AR+RA++RR+ Sbjct: 61 SVLEHWRRAGRRMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALLRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GHA S + G + ++ + V V G + LT EY+++ L +++ + HLY+ Sbjct: 121 GHASSELTCGPVRLDTRSGRVSVGGSPVKLTSHEYRLLSYLMHHAGRVVSRAELVEHLYE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+VF+ +LRKK+ + I+TV G GY+L Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIDC-----DVIQTVRGLGYLL 216 >gi|169350865|ref|ZP_02867803.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552] gi|169292451|gb|EDS74584.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552] Length = 216 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 123/220 (55%), Gaps = 7/220 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K +++ ++L L N+ GE G+ +++ I+LDL L I G EV Sbjct: 2 ILIIEDEKNISNLLKLELTHANYECDQAFDGESGLNKALNQDYELILLDLMLPRINGIEV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR+ K TP+ +L+ + DKV GLQ GADDY++KPF EEL+ARI A++RR Sbjct: 62 CRQLRLKK-QTPIIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRVSNQ 120 Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +SL G++ +++ V+ + I LT E+ ++ LL +TK LN ++ Sbjct: 121 NKSLKYKYGEIEIDVINHHVKFKDETITLTTTEFDLLSLLVQNGGNIVTKNDILNKVWGY 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++V+I LR KL+ G N IET+ G GY L Sbjct: 181 EKNVSTNVVEVYIRYLRNKLA----GIN-IETIRGIGYRL 215 >gi|332359136|gb|EGJ36957.1| DNA-binding response regulator [Streptococcus sanguinis SK49] Length = 234 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMTREGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179 Query: 181 GRDEPE---VKIIDVFICKLRKKL 201 +DE E + ++I LR+KL Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203 >gi|317051237|ref|YP_004112353.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316946321|gb|ADU65797.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 235 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+IEDD+ LA I L+S V V GE G+ + +D I+LDLGL G Sbjct: 7 IHILIIEDDRRLAQLISEYLQSHGLVVRVETDGERGLREALRHRYDVILLDLGLPGRDGI 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR P+ I + DKV GL+ GADDYI+KP++ EL+ARIRA RR R Sbjct: 67 SVCQQLR-GHSDIPILITTARGEEADKVLGLEVGADDYIAKPYSPRELLARIRAFTRRMR 125 Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G +++ G L + +A + R+ LT E+ ++ L+ L++E + Sbjct: 126 GQVGPRHAVLQVGSLCLEPEALQATLDSSRLDLTSYEFALLYALASNAGQVLSRERLMEL 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D+ + +DV I +LR+KL + + I TV G GY Sbjct: 186 ARGSSDDAFDRSVDVHISRLRQKLGDNSRPVKMIRTVRGAGY 227 >gi|229032673|ref|ZP_04188636.1| Two-component response regulator vanRB [Bacillus cereus AH1271] gi|228728672|gb|EEL79685.1| Two-component response regulator vanRB [Bacillus cereus AH1271] Length = 247 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 123/221 (55%), Gaps = 9/221 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + I L ++NF V V G +GI L + +D ++LD+ L DI G+ Sbjct: 29 HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 88 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + +R + P+ +L+G+ + E +++G + G DDYI+KPF+ + R+ A++RR+ Sbjct: 89 ICKIMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 147 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++ +L +N A V G++I LT KE+++I L + L++ LN + Sbjct: 148 KEAETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 207 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +V++ID I LRKKL G YI+TV G GY Sbjct: 208 WGYEHYGDVRVIDTHIKNLRKKL-----GIPYIKTVKGIGY 243 >gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 236 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 131/228 (57%), Gaps = 14/228 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 +ILL+EDD+ ++ I+L L+ E F V DGI C+ + ++D ++LDL L + Sbjct: 5 KILLVEDDENISKIIKLYLEKEGF---VVSCCYDGIVACETFLKNKYDLVLLDLMLPGLD 61 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G++V + +R TP+ +L+ +E+KV+GL GADDY++KPF EL+ARI A++RR Sbjct: 62 GYQVCQKIRETS-YTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRR 120 Query: 119 -SRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + H + + + +L ++DA + + I++ +E Q+++ L + N + Sbjct: 121 IEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + ++ E E ++ID++I +LRK+L + I+TVWG GY Sbjct: 181 EELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGY 228 >gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 230 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 8/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D++ + H I + L++ F+ G++ +E + D I+LD+ + GF Sbjct: 7 LEILIVDDEEDMRHLIGMYLENAGFSCRYAAGGKETLEEIQKNLPDLILLDIMMPGEDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 V +R A+ PV LS DKV+GLQ G DDYI KPF+ EL ARI A++RRS Sbjct: 67 SVCERVR-AQYEVPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVLRRSG 125 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G ++ G ++++ A++V+V+G I LT KEY+++ ++ L++E L Sbjct: 126 SISGADSNITSAGKITIDKKARSVKVEGSYIMLTLKEYELLMFFIGHQSHALSREQLLEQ 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ +D I LR KL G +YI+TVWG GY Sbjct: 186 IWGMDYLGSLRTVDTHIKTLRMKL----GAGDYIKTVWGIGY 223 >gi|301053448|ref|YP_003791659.1| response regulator [Bacillus anthracis CI] gi|300375617|gb|ADK04521.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 232 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ + ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIVNYNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G I+LT EY+++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGY 228 >gi|326317092|ref|YP_004234764.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373928|gb|ADX46197.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 242 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 14/234 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58 M++LL+EDD A+ +++ L V T LG+ L ++ DA++LDL L + Sbjct: 14 MQLLLVEDDPAMQATLQRSLARRGMEV--TALGDGRAALAQWASRPPDAVVLDLSLPGLD 71 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +VL+ R + + TPV +L+ ++ D+V GL +GADDY+ KPF+ +EL AR+RA+VRR Sbjct: 72 GLQVLQQARASGLRTPVLLLTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALVRR 131 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A S + G + D+ + G + LT +E ++ L + + K Sbjct: 132 LGDLSEARPAAAPSTVSIGAIRYEKDSGAIYRDGEVMELTPRELALMHALLAQPGHAVAK 191 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E ++ G+ + + + I+V + +LRKKL AG + T+ G GY+LR +A Sbjct: 192 ERLYELVFPGQLDVQYEAIEVVVYRLRKKL---AGTGLTLMTLRGLGYLLRADA 242 >gi|255523826|ref|ZP_05390791.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512529|gb|EET88804.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 230 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD + ++ L+ +++ V+ G DG+ + ++ ++LDL L G E Sbjct: 4 KILIIEDDLEICSLLKEFLEESGYDIKVSHTGIDGMRELRTLNYNLVLLDLMLPFKSGDE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +LR LR PV ILS + KV L+ GADDY++KPF+ E++ARI + +RR + Sbjct: 64 ILRELRSFS-DIPVIILSAKDMVHTKVDLLRLGADDYVTKPFDLNEVLARIESNLRRCKS 122 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S ++ D+++N + K V V G+ + LT KEY ++ LL +K Sbjct: 123 DTSSTIEKEPILTYKDITLNEEEKKVVVNGNTLVLTSKEYGILLLLLSHPQKVFSKANLF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E ++V I +R KL +A + YIET+WG GY L E Sbjct: 183 ESIWKEEYFSEDNTLNVHISNIRNKLKSANPNEEYIETIWGMGYKLHE 230 >gi|292670812|ref|ZP_06604238.1| two component response regulator [Selenomonas noxia ATCC 43541] gi|292647433|gb|EFF65405.1| two component response regulator [Selenomonas noxia ATCC 43541] Length = 225 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL EDD L I+ ML+ + +V +VTD G D + E+D +ILD + G Sbjct: 1 MRVLLAEDDMRLGKLIQYMLEQNDIDVEWVTD-GNDIYSYATYAEYDILILDWMMPGETG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E LR + +L+ ++ED+V GL +GADDY+ KPF EL+AR+RA+ RR+ Sbjct: 60 VEACARLRRNGYDRAILVLTARDAVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRT 119 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q + G +N A +E G I L+ +E+Q+ +LL+ + +++ L+ + Sbjct: 120 TQRIQHEVDEIGGFKLNRTANILEKNGKMIQLSPREFQLFDLLAQNIGIVVPRDIILDRI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ID ++ LRKKL +AAG + I+T+ G GY L Sbjct: 180 WGLESDVSSNNIDSYMKMLRKKL-DAAGEGSVIKTIRGVGYKL 221 >gi|226357957|ref|YP_002787697.1| response regulator, OmpR [Deinococcus deserti VCD115] gi|226320200|gb|ACO48193.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 227 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD +A + ++ + V G+ + D +ILDLGL D+ G EV Sbjct: 5 ILVIEDDPDIAQILTTEIEDAGYRVLTAPNRMSGLTCARSEAPDLVILDLGLPDMHGTEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR TP+ +L+GM ++ KV L++GA DY++KPF+ EELVAR+R +R+ H Sbjct: 65 ARRLRRTS-RTPIVVLTGMDTVASKVGLLEAGASDYLTKPFHPEELVARVRVQLRK---H 120 Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q+ V+ G L + L + QG + L+ KE++++ LL+ ++++ + L+ G Sbjct: 121 QQAGEVSVGALKLYLQQQVCLYQGREVRLSPKEFELLGLLAEVPGRVYSRDVIVAELWPG 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++V + LR KL GG + TV G GY LR+ Sbjct: 181 VVDVGRSVVEVHMANLRSKLRE-VGGAGVLRTVRGVGYALRD 221 >gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577] Length = 242 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 126/238 (52%), Gaps = 12/238 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ A+ +E LK +F+V G D + + + +D ++LDL L ++ G E Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R+ + TPV +L+ + DKV GL+ GADDY+ KPF+ E++ARI A++RR Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 122 HAQS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 S + TG +++ V V + LT KE+++++ L +N L Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++ L ++ + +++D+ I LR+K+ Y++T+ G GY D Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGDD 240 >gi|239827570|ref|YP_002950194.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239807863|gb|ACS24928.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 240 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 129/228 (56%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D++ + +++ L+ EN+ + D G+D +E ++D I+LDL L G Sbjct: 7 VKILVVDDEERIRRLLKMYLERENYIIDEADNGDDALEKALENDYDVILLDLMLPGRDGI 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR+ Sbjct: 67 EVCKGIREKK-ATPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAA 125 Query: 121 G--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ ++V L+++ DA V V G ++LT KEY+++ L+ + +E Sbjct: 126 NTAYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLARSPDKVFDRE 185 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219 L ++ +++ +D I +LR+KL+ + I TVWG GY Sbjct: 186 QLLKEVWHYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGY 233 >gi|125718593|ref|YP_001035726.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|125498510|gb|ABN45176.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] Length = 234 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179 Query: 181 GRDEPE---VKIIDVFICKLRKKL 201 +DE E + ++I LR+KL Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203 >gi|325690941|gb|EGD32941.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 234 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 3/203 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVWA 180 Query: 181 GRDEPEVK--IIDVFICKLRKKL 201 ++ ++ + ++I LR+KL Sbjct: 181 NDEDEDLDEGFVWIYISYLRQKL 203 >gi|312621388|ref|YP_004023001.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312201855|gb|ADQ45182.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 221 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 8/222 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED + L I LK++ FNV + +D L K + D +ILD+ L D+ G+EV Sbjct: 4 ILVVEDQQDLNQIITRFLKNDGFNVINSYTAKDA--LNKLNDADLVILDIMLPDMEGYEV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +K P IL+ S DK++G + GA+DYI+KPF+ EL+AR++ ++RR+R Sbjct: 62 LK--EASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRNF 119 Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +S+ ++ G + + V V G ++LT KE++++ L+ K+ +++ L ++ Sbjct: 120 EESIKLLGGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +DV I +LR+KL + K I+TVWG GY L E Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSE 218 >gi|229007521|ref|ZP_04165116.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228753659|gb|EEM03102.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] Length = 223 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 124/225 (55%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G++ ++ E + +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGKEALQRWD-EEPNVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVM 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H +I G+L + + V V G I LT +E+ + +L + K ++ L Sbjct: 120 KHGVPKDDKVIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASNKQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL A+G +I+T++G GY L Sbjct: 180 KVWGFEYSGNTRAVDIMVQRLRKKLG-ASG--EHIKTIYGVGYKL 221 >gi|226358137|ref|YP_002787876.1| response regulator, OmpR; phosphate regulon transcriptional regulatory protein phoB [Deinococcus deserti VCD115] gi|226319780|gb|ACO47774.1| putative response regulator, OmpR; putative phosphate regulon transcriptional regulatory protein phoB [Deinococcus deserti VCD115] Length = 223 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD A+ + L +E V G++ L D ++D L G Sbjct: 3 RVLIVDDDPAILEILRAYLGAEGHEVLEAQDGQEARALLP--RADVAVMDWMLPGAAGPV 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R A + P+ +L+ EDK+ GL+ G DDY+ KPF+ E+VAR+RA++RR Sbjct: 61 LAREARAAGLDLPILMLTARGEEEDKLHGLEEGVDDYVVKPFSPREIVARVRALLRRVGV 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H + + L+++L +TV V G + L+ E+ ++ L+L T+E L L+ G Sbjct: 121 HQD--VRSDSLTMDLKRRTVMVDGLPVELSRLEFDLLAALALHPGLAWTRERLLERLW-G 177 Query: 182 RDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D P +++DV I LRKKL + YIETV G GY RE Sbjct: 178 PDFPGTERVVDVHITALRKKLGDDPERPRYIETVRGVGYRFRERG 222 >gi|255280825|ref|ZP_05345380.1| KDP operon transcriptional regulatory protein KdpE [Bryantella formatexigens DSM 14469] gi|255268762|gb|EET61967.1| KDP operon transcriptional regulatory protein KdpE [Bryantella formatexigens DSM 14469] Length = 233 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + I LK+ ++ G I + D I+LDLGL D+ G EV Sbjct: 6 ILVVEDDAPVRNLITTTLKTNDYRYLAAVNGATAILEASSHNPDIILLDLGLPDMDGVEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + + P+ ++S S DK++ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IENIR-SWSNLPIIVISARSEDTDKIKALDAGADDYLTKPFSVEELLARLRVTQRRLSFM 124 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A S+ V G L V+ + G +HLT EY+++ LLS LT Sbjct: 125 SAEMLSASSVFVNGKLKVDYVGGCAYLDGQELHLTPIEYKLLCLLSKNVGKVLTHTFLTQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + +V + VF+ LRKKL A YI+T G GY Sbjct: 185 NIWGRSWDNDVASLRVFMATLRKKLEPDADSPQYIQTHIGVGY 227 >gi|186477801|ref|YP_001859271.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184194260|gb|ACC72225.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 228 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LLIEDD+ +A I+ L+ F V D+ DGI + + +ILDLGL I Sbjct: 1 MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L R + TPV +L+ + D+V+GL SGADDY+ KPF EL ARIRA++R Sbjct: 58 DGMTLLSRFRQSNRHTPVIVLTARDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMR 117 Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RS H + + G + ++ + + + L+ +E+ ++E+L LR ++K Sbjct: 118 RSGPHGDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +HL + I+V++ ++RKKL N + I TV G GY+L+E Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLENC---RVEIVTVRGFGYLLQE 223 >gi|20809033|ref|NP_624204.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20517704|gb|AAM25808.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 231 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K L I+ L+ E + + GE+ +++ K D IILD+ L + GF Sbjct: 4 KILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL+ LR + ++ P+ +L+ DKV GL+ GADDYI+KPF+ ELVAR++A +RR Sbjct: 64 VLKTLRQS-MTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELVARVKANLRRVSF 122 Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G Q+ I+ +L +++ VE I LT +E++++ L L K ++E L + Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++ +DV I +LR+K+ + +I T G GY Sbjct: 183 WGYEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGY 223 >gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 235 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + + + LK + + V G +++ + ++ D ++LD+ + + GF Sbjct: 9 KVLVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVMMPGMDGFG 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +LR LR I P LS S+EDKV GL G DDY++KPF+ EE+VAR+ ++RRS Sbjct: 69 LLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRRSGF 128 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + IV DL ++ + V G + L+ E+ ++ + T L+K L+H Sbjct: 129 GVGDEEPTRIVFSDLELDDETHEVFKNGELVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G K I T+ G GYV+RE Sbjct: 189 VWSYDFGGDVNVVESYVSYLRRKVDT--GPKRLIHTLRGVGYVMRE 232 >gi|253998110|ref|YP_003050173.1| two component heavy metal response transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] gi|253984789|gb|ACT49646.1| two component heavy metal response transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] Length = 226 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 129/224 (57%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57 MRIL++ED+ + L F VTDL +DG++ + +D IILD+ L Sbjct: 1 MRILVVEDEHKTGEYLRKGLTEAGF---VTDLIQDGLDGQHMALAEHYDLIILDVMLPRA 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++++ ALR A TPV L+ +ED+V+GL+ GADDY+ KPF EL+ARIR ++R Sbjct: 58 SGWQIIAALRKAGKHTPVLFLTARDLVEDRVKGLELGADDYLVKPFAFSELLARIRTLLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R R ++ +L V++ + V+ G +I LT KE+ ++ELL R+ L++ + + Sbjct: 118 RGRTREADVLQVANLEVDVLRRRVQRDGKKIELTAKEFGLLELLVRRRGEVLSRSLIASQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +I+V + +LR K+ + K I TV G GYVL Sbjct: 178 VWDMNFDSDTNVIEVAMRRLRAKIDDPFEPK-LIHTVRGMGYVL 220 >gi|197336815|ref|YP_002157801.1| transcriptional regulator [Vibrio fischeri MJ11] gi|197314067|gb|ACH63516.1| transcriptional regulator [Vibrio fischeri MJ11] Length = 228 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED + L S+ + L + F V T G G+ + ++D IILDL L ++ G Sbjct: 1 MKILLIEDSEHLRRSLIVGLSNLGFTVDETGDGSKGLSMAITNDYDFIILDLMLPNVDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+++R V ILS S ED+V GL SGADDY+ KPF+ +EL ARI + RR + Sbjct: 61 TLLKSIRKMGNDVKVIILSAKSQPEDRVEGLMSGADDYLVKPFSFDELHARILTVGRRGQ 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ I G ++L KT+E I LT EY++IE L L KN +T E +++ Sbjct: 121 VKNSDDDISIGLFKLDLAKKTLEFDTKFIDLTKNEYKIIECLFLSKNQVMTTENISDYVV 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D I+ + +RKK+ A GG+ ++ G GY + ++A Sbjct: 181 GSFDSLSKNTIESHLSSVRKKV-KALGGELPVKNKRGFGYYVEKDA 225 >gi|84496068|ref|ZP_00994922.1| putative two component response regulator [Janibacter sp. HTCC2649] gi|84382836|gb|EAP98717.1| putative two component response regulator [Janibacter sp. HTCC2649] Length = 247 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L++EDD +A I L+ E + V ++ G ++ + ++ D ++LDLGL G Sbjct: 19 VRALVVEDDLPMATLIGNYLEHEGYEVRLSHDGVAAVQAARGFDPDVVVLDLGLPGQDGI 78 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + V +L+ + D + GL GADDY++KPF+ ELVAR+RA+ RR R Sbjct: 79 EVCRQLRTFSDAY-VVMLTARADELDTLIGLSVGADDYMTKPFSPRELVARLRAMQRRPR 137 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H +L G L+++ + V + + LT E+ ++ +LS R ++ + Sbjct: 138 PIDGANHGPTLRRFGTLAIDPIGRDVWLDDQPVSLTRTEFDVLAVLSERPGMAFSRRQLI 197 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ G + ++DV I LR+KL + AG +I TV G GY Sbjct: 198 DQVWGGTWVGDDHLVDVHIGHLRRKLGDDAGAARFIRTVRGIGY 241 >gi|332992601|gb|AEF02656.1| two component transcriptional regulator [Alteromonas sp. SN2] Length = 237 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 132/224 (58%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60 +ILL++DD L + L+++ F V + G+ + L + EFD ++LD+ + + G Sbjct: 7 KILLVDDDAELCALLSEFLQTDGFAVETLNSGDAAVARLLQSDEFDTVVLDIMMPGMSGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R AK TP+ +L+G D++ GL+ GADDY++KP N EL ARIRAI+RR++ Sbjct: 67 DVLRNVR-AKKQTPILMLTGRGDDIDRILGLEMGADDYLAKPCNPRELGARIRAIIRRTQ 125 Query: 121 -GHAQS-LIVTGDL-SVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G+A + +V +L + LD A+T V + LTG E+ + LL R T+TK+ Sbjct: 126 NGNAPTQTVVHAELHGIVLDSGARTALVDNTPLPLTGAEFNALSLLMERVGQTITKQEMT 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + E + +DV + ++R+KL+ A G + I++V G GY Sbjct: 186 EEVLNRPLEAYDRAMDVHVSRIRQKLT-AVGINDVIKSVRGVGY 228 >gi|319796195|ref|YP_004157835.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315598658|gb|ADU39724.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 257 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 15/230 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLI+DD+ LA + + +G+ + ++DA ILD+ L ++ GF Sbjct: 25 RILLIDDDEHLAAPLTTYFARFGCTLESAVRPSEGLAKLRAGQYDAAILDVMLPEMDGFA 84 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +L+ + D+V GL+ GADDY+ KPF ELVAR++ I+RR R Sbjct: 85 LCREIR-KESDIPIVMLTARGEVTDRVVGLELGADDYVPKPFEPRELVARVQTILRRQRS 143 Query: 121 ------GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 GH + L V LS++LD + V QG R+ LTG E++++ LL+ ++ Sbjct: 144 TPAVANGHGNNGTQLRVFDGLSIDLDRRQVLRQGERVELTGTEFELLALLAAEPGKVFSR 203 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + LN L E + +D+ + +LRKKL + I+T+ GY L Sbjct: 204 DDILNRLRGHEAELYTRAVDIVVSRLRKKLEPL----DCIKTLRNAGYAL 249 >gi|209517424|ref|ZP_03266266.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209502191|gb|EEA02205.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 224 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+L++EDD + S+ L+ ++V +V D G G E+ ++LDLGL + G Sbjct: 1 MRVLIVEDDLQIGQSLLRALQDAEYSVDWVRD-GNAGSAAIAAVEYTLVLLDLGLPGMGG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E+L++ R P+ IL+ ++ +V+GL GADDY+ KPF+ EL+ARIRA++RR Sbjct: 60 IELLKSSRDKGSKVPILILTARDDLDARVQGLDFGADDYVLKPFHLPELLARIRAVLRRK 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A S + L+++LD +T+ G L+ +E+ ++ R T L+++ LY Sbjct: 120 AGFASSRLGNDTLNLDLDKRTLCCNGVSSVLSAREFALMFAFLERPGTILSRDQLEGKLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E +DV I +RKK G++ I V G G+ + Sbjct: 180 GWGKEVESNAVDVLIHGVRKKF-----GQSVIRNVRGLGWTV 216 >gi|73543071|ref|YP_297591.1| two component transcriptional regulator [Ralstonia eutropha JMP134] gi|72120484|gb|AAZ62747.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 234 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 15/236 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A +E L V V G E + D +ILDLGL I G Sbjct: 1 MRILLIEDDRQIASGVEAGLTRAGHQVRVVHDGVYATEHLLREQHDLVILDLGLPGIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R +TPV IL+ +EDK+ GL +GADDY+ KPF EL AR+R ++RRS+ Sbjct: 61 TLLARYRARNRTTPVIILTARDELEDKLSGLNAGADDYLVKPFALPELEARVRVLLRRSQ 120 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H +++ + G L ++ + + + + G + L+ +E+ ++ELL R+ ++K + Sbjct: 121 -HGEAVPDRDVRLGRLRLSGNDRRMFIDGKPLELSPREFAVLELLLQRQGRVVSKAQLQD 179 Query: 177 HLY-------DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 HL +G D I+V++ ++RKKL + I TV G GY+L+ A Sbjct: 180 HLATFAHPAGEGGDTVGDTAIEVYVHRVRKKLEES---DVEIVTVRGFGYLLQARA 232 >gi|158317452|ref|YP_001509960.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158112857|gb|ABW15054.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 220 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 119/220 (54%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ ED+ +A IE L++ F G +E+ E D I+LDLGL D+ GF Sbjct: 4 RVLIAEDEYRIASFIEKGLRANGFLPVCVGDGASALEVALRGEVDLIVLDLGLPDMDGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A + PV +L+ + D V L+ GADDY+SKPF EEL+ARIR +R R Sbjct: 64 VLRRLRGAGVDVPVVVLTARDGVRDTVAALEGGADDYMSKPFRFEELLARIRLRLRADRA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ +S++L + +V G + LT +E+ + E L +E L+ ++ Sbjct: 124 PEATVLRVRGVSLDLRTRRAQVGGRTVDLTAREFVLAETFLRHPGQVLAREQLLSAVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ LR+K+ G + I TV G GY L Sbjct: 184 DYDPGSNVVDVYVGYLRRKI-----GADCITTVRGMGYRL 218 >gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 239 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ + + + LK + F V + G+ +E+ + + +A ILD+ + + GF Sbjct: 10 VKVLVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMARELKPEAYILDVMMPGMDGF 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + PV L+ ++ED++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 70 ELLGKLRAEGLDAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGN 129 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S I DL++N D V G + L+ E+ ++ L L L+K L+ Sbjct: 130 VTETETGDSTIRYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMLNAEVVLSKAKILD 189 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 190 NVWHYDFGGDGNVVESYISYLRRKVDQ--GEPQLINTVRGVGYVLR 233 >gi|255531250|ref|YP_003091622.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255344234|gb|ACU03560.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 227 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 126/228 (55%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +I L EDD +A I+ L+ + + + G+ +E FD +ILD+ + + G Sbjct: 2 FKIALAEDDPKIADLIKSGLEEQGYEITSIADGQQALESFGINHFDLVILDIMMPGLNGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+ R LR + + P+ +L+ +S+++DKV GL++GADDY++KPF+ +EL+ARI A++RR Sbjct: 62 ELCRQLRSSHKNLPILMLTALSTVDDKVMGLKAGADDYLAKPFHFKELLARIEALLRRYS 121 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + H L ++++N +K V+ G I LT KE+ ++EL N L+++ Sbjct: 122 TGTIQKQHQHELTFE-NITLNTYSKEVKRAGINIELTAKEFTLLELFLRNPNRLLSRQYI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + +IDV++ LR K+ K I T GY+L+ Sbjct: 181 AENAWDINFDTGTNVIDVYVNFLRNKIEKGFDRK-VIHTKINMGYILK 227 >gi|196036852|ref|ZP_03104240.1| DNA-binding response regulator [Bacillus cereus W] gi|195990534|gb|EDX54514.1| DNA-binding response regulator [Bacillus cereus W] Length = 233 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDDLEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium Broad-1] gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium Broad-1] Length = 225 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ + + ++ ML+ E F V V + G D ++ D ++LDL L + G E Sbjct: 3 RVLVVEDEASYSEALSYMLRKEGFEVAVAEDGTDALKEFDRNGADIVLLDLMLPGLSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R A S PV +++ DKV GL+ GADDY++KP++ ELVARIRA++RR Sbjct: 63 VCRQIR-ATSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGTE 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + G + ++++ V V G+ L KE++++E+ LT+ ++ ++ Sbjct: 122 PDAAPATLEAGPVRMDVERHVVTVDGNEQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + K +DV + +LR KL ++ TV G GY L Sbjct: 182 GSDYVGDTKTLDVHVKRLRAKLEPDPSEPKFLVTVRGLGYKL 223 >gi|324993651|gb|EGC25570.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324995037|gb|EGC26950.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|327462920|gb|EGF09241.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327474524|gb|EGF19929.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 234 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179 Query: 181 GRDEPE---VKIIDVFICKLRKKL 201 +DE E + ++I LR+KL Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203 >gi|302524998|ref|ZP_07277340.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302433893|gb|EFL05709.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 264 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ +A + + + E + G D + + D ++LDL L D GF Sbjct: 38 VRLLVVDDEPHIADLVATVARYEGWQAVTAGCGADALARAAEFAPDIVVLDLMLPDFDGF 97 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR + PV L+ + D++ GL G DDY+ KPF+ EEL+AR+RA++RR+ Sbjct: 98 TVLDKLREKHDAVPVVFLTAKDATADRIAGLTRGGDDYLVKPFSVEELMARLRAVLRRTS 157 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + V+ GDL+++ + V G LT EY+++ L LTK L+H Sbjct: 158 EKPDARAVSLQVGDLTLDEETHEVRRGGQLAELTPTEYELLRYLMRHSPAVLTKAQILDH 217 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ ++++ I +LR+KL A + I TV G GY +R+ + Sbjct: 218 VWEYDFGGRSNVVELAISRLRRKLDAEA--EPLIHTVRGVGYSVRQAGR 264 >gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 226 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 1/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ +I+ L++E F G I + D +ILD+GL DI G E+ Sbjct: 5 ILIVDDEPAIVDTIQYALETEGFETLCFSTGMPVIAALAGHPADLVILDIGLPDIGGLEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R S P+ L+ + D++ GL+ GADDYI+KPF+ E+ AR++A++RR+ Sbjct: 65 CRLIRQTS-SVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVLRRTSNP 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ G SVN + + G + L+ EY+M++ R ++E + +++ Sbjct: 124 GNAMSSPGTFSVNESKRQISYFGRMLALSRYEYEMLKTFIRRPGHVFSREQLMQLVWENP 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + ID I +R KL + I T G GY LR++ Sbjct: 184 ECSLDRTIDAHIKNIRAKLKKIQPDREPIVTYRGTGYALRDD 225 >gi|91787344|ref|YP_548296.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91696569|gb|ABE43398.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 226 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ AL + L+ V D G +++DA++LDLGL G Sbjct: 1 MRILLAEDEHALGEWLTKALEQSGNRVDWRDDGRLVERALVDHDYDAVVLDLGLPGRSGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR LR PV IL+ S+ D+V L GADD+++KPF EL AR+ A+VRR+R Sbjct: 61 EILRRLRAQDKRLPVLILTARDSLADRVNALNEGADDFLAKPFALAELEARLTALVRRAR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G G L + ++ + + L+ +E+ +++ L R L+++ ++ ++ Sbjct: 121 GSEHPRFACGPLLFDTVSRQFTLGSENLPLSPREHALLKALIQRSGEPLSRQQVMDRVFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +IDV + +LRK+L ++ I+T G GYVL Sbjct: 181 DEEDVQPSVIDVLVHRLRKRLDHSG---VRIQTYRGLGYVL 218 >gi|125974818|ref|YP_001038728.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004925|ref|ZP_05429898.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418728|ref|ZP_06249747.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125715043|gb|ABN53535.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255991105|gb|EEU01214.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407812|gb|EFB38071.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941938|gb|ADU75972.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 232 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ L E F+ + GE IEL + D I+LD+ L + GF Sbjct: 4 KILVVDDEKNIVDILKFNLAKEGFSTLEANDGEQAIELALSEKPDLILLDIMLPKLDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + ISTP+ +++ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VCRKLRES-ISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVAS 122 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A++ + GDL ++++ V I LT +E+++++ L+L+ ++E L Sbjct: 123 SAETQKKQSNYLKFGDLEIDIEHYEVRRNNEVIELTLREFELVKFLALQPGQIFSRETLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +V+ +DV + ++R+K+ YI T G GY Sbjct: 183 EKVWGYEYYGDVRTVDVTVRRVREKIEKDPSNPCYIMTKRGVGY 226 >gi|330964376|gb|EGH64636.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 229 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD ++ L + V T G DG+ L +D I+LD+ L I G+ Sbjct: 1 MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A+ + PV L+ ++D++RGL+ GADDY+ KPF+ EL+ RIR I+RR Sbjct: 61 QIIEVLR-ARQNVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++L + V Q I LT KE+ ++ LL R+ L++ + ++D Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++DV I +LR K+ K I TV G GYV Sbjct: 180 MNFDSDTNVVDVAIKRLRSKVDLPYPVK-LIHTVRGIGYV 218 >gi|323359874|ref|YP_004226270.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323276245|dbj|BAJ76390.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 224 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD+ + S+ L++E F G D + D ++LD + G Sbjct: 6 RVLVLDDDETIRLSVVTALRAEGFTAEGAPDGTDLTARLSAFRPDLVVLDWMMPGPAGIR 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L +R A+ T V +L+ ++D++RG GADDY++KPF ELVAR A++RR RG Sbjct: 66 LLPVIR-AEGDTAVIMLTARDEVDDRLRGFAEGADDYVTKPFTVAELVARTGAVLRR-RG 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 I GDL V+ DA G + LT E+++++LL+ + TL+K L ++ G Sbjct: 124 RLPQTIAIGDLVVDPDAAVAHRAGGPLDLTATEFRLLQLLAESRGRTLSKGQILTQVW-G 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ + +++V + LR+K+ A G I TV G GY L Sbjct: 183 YDDYDPNLVEVHLSALRRKME--ARGPRLIHTVRGLGYRL 220 >gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 232 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 128/231 (55%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ LK + V + G +E+ + +ILD+ + ++ G Sbjct: 1 MKILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEHPELLILDVMMPNMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R++VRR+ Sbjct: 61 EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120 Query: 121 GH--AQSLIVTGDLS---VNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEM 173 A+ V LS + LDA T EV +G R I LT E+ ++ LL L++ Sbjct: 121 AESIAKKQPVETQLSFEDLKLDADTREVTRGERQISLTRTEFALLRLLMENPRKVLSRNT 180 Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ G D P ++V+I LRKK + +G I TV G GYV+RE Sbjct: 181 ILEEVW-GYDFPTSGNALEVYIGYLRKK-TEESGEPRLIHTVRGVGYVMRE 229 >gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] Length = 232 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + G+ Sbjct: 4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIEAQPIDLVVLDIMMPKMDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R AK P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 64 EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++S + G + +N + +TV+V G +I LT KE+ ++ LL+ E Sbjct: 123 TLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ + V I LRKKL I+TVWG GY Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|167033602|ref|YP_001668833.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166860090|gb|ABY98497.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 221 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 126/223 (56%), Gaps = 8/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD +A +++ L + + V +V D G + +D ++LDLGL G Sbjct: 1 MRVLLVEDDSMIAQALQDALATAGYAVDWVAD-GPTAEAALRTQAYDQVLLDLGLPGQDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++L+ LR A P+ I++ + ++D+VRGL GADD++ KPF EL+AR+RA++RR Sbjct: 60 LQLLQQLRAADNPVPLLIITARAELDDRVRGLDGGADDFLQKPFEMAELLARMRAVMRRK 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G A + G +S++L +K V + L+ +E+ +++ L +R L++ + L Sbjct: 120 GGRATPELGNGTVSLDLVSKCARVMAQPPVQLSNREFALLQALLIRPGAILSRAELEDRL 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y +E E ++ I LR+KL GK+ I + G G+++ Sbjct: 180 YGWGNEVESNAVEFLIHALRRKL-----GKDVIRNIRGLGWMV 217 >gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 235 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I L+ E ++ GE+ +E Y+ D I+LDL L G E Sbjct: 3 KILVVDDEKPISDIITFNLQKEGYDTLAAFDGEEALESFASYQPDLIVLDLMLPKKDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R S P+ +L+ DKV GL+ GADDY++KPF+ EL ARI+A +RRS+ Sbjct: 63 VCREIRKTS-SVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANLRRSQV 121 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++ + G+L+++ DA V G + LT +E++++ LS +T+E Sbjct: 122 NVEAAEEKEDSNELNVGNLTIHEDAYYVSKNGKEVDLTHREFELLHYLSKHLGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + + T G GY L++N ++ Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDTPSHPKLLMTRRGVGYYLQDNDQE 235 >gi|307129681|ref|YP_003881697.1| putative two-component system response regulator [Dickeya dadantii 3937] gi|306527210|gb|ADM97140.1| Putative two-component system response regulator [Dickeya dadantii 3937] Length = 226 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L H + L +E F+ G++G++ ++ A+ILD+ L D+ G Sbjct: 1 MKILLVDDDAELGHMLCEYLTAEGFSTSQVMTGKEGVDGAMSDQYTAMILDIMLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R + S P+ +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 61 DVLRQVRRNR-SIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119 Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+ + G+L++ ++ E +G LT E+ ++ELL +TK+ Sbjct: 120 DKAEKSEDTGTLNYGELAICPSTRSSEWRGKAFDLTASEFNLLELLMRSSERVVTKDELS 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R E + +DV I +R+KL+ G IETV GY +R Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLAALDGCNLTIETVRSVGYRIR 226 >gi|168178452|ref|ZP_02613116.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182671490|gb|EDT83464.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 228 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 12/224 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G +GIE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 R +R + + +L+ ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR + Sbjct: 64 CRIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 +LI G L ++ D + V+V G + +T E+ ++ L K L++E +N + Sbjct: 123 NSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++G D + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFNGYD----RTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222 >gi|152974099|ref|YP_001373616.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022851|gb|ABS20621.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 246 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E +N+ G +G+E+ + E ++LD+ + I G + Sbjct: 19 ILVVDDEKEIRDLITIYLKNEGYNILQAGDGAEGLEILENNEVHLVVLDIMMPKIDGIHM 78 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R K P+ +LS + DK+ GL +GADDY++KPFN ELVAR+++ +RR Sbjct: 79 CMKVREQK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELVARVKSQLRRYMKM 137 Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ I GD+ +N+ V V + LT +E+ ++ELL + E Sbjct: 138 SGFMIENENEIEIGDIKINVSTHEVVVADREVKLTPREFSILELLVRNSGMVFSTEQIYE 197 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ A YI+TVWG GY Sbjct: 198 KVWNERSFQSDNTVMVHIRKIREKVEENARKPRYIKTVWGVGY 240 >gi|78066346|ref|YP_369115.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77967091|gb|ABB08471.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 221 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M ILL+EDD LA ++ L+ + + D+ + L + +DA++LDL L G Sbjct: 1 MHILLVEDDVMLADAVCAGLRQNGWRADWSADVPAARLALVG-HGYDAVLLDLQLPGASG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F +L A+R TPV I++ + D++RGL +GADDY+ KPF +EL AR+RA+ RRS Sbjct: 60 FTLLAAMRANYDPTPVLIVTARDQLSDRIRGLDAGADDYLVKPFQLDELYARLRALTRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G ++ D+ V+ K V G + L+ EY+ + L R+ +T+ +Y Sbjct: 120 QGRVSERLIYRDVHVDPARKEVTRAGEPVALSIHEYRTLLALMERQGRVVTRTQLEERVY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E I V+I +LR+KL G I TV G GY + E+ Sbjct: 180 GNDSAIESNTIAVYIHQLRRKL-----GDELIVTVHGFGYRVGES 219 >gi|257886987|ref|ZP_05666640.1| response regulator [Enterococcus faecium 1,141,733] gi|257823041|gb|EEV49973.1| response regulator [Enterococcus faecium 1,141,733] Length = 218 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 123/222 (55%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ A+ + L+ + VY G++ ++ + EFD ++LD+ L +I G+ Sbjct: 1 MKILVVEDNPAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLVLLDIMLPEIDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV + + PV L+ + D+V GL+SGA+DYI+KPF+ EEL+AR+ ++RR+ Sbjct: 61 EVFAYM--WEYDLPVIFLTAKDQLSDRVSGLRSGAEDYITKPFDLEELLARVEVVLRRNG 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + L+ + +N + V + + LT KEY+++ L K L +E ++ Sbjct: 119 KNDSNKLLKWQYIEINEKTRAVTARNQAVSLTPKEYELLLYLIRNKGIILPREKIYQKIW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +EP + +D+ I ++R KL + T++G GY+L Sbjct: 179 GREEEPNSRTLDLHIQRIRNKLQLGQD----LRTIYGVGYLL 216 >gi|18309218|ref|NP_561152.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18143894|dbj|BAB79942.1| two-component response regulator [Clostridium perfringens str. 13] Length = 223 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ I++ L+ E + D +EL + D IILD L DI GF Sbjct: 1 MKILVVDDEVSILQLIKMNLEIEGHIPITAENALDALELVIKEKPDIIILDAMLPDISGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116 ++ ++ P+ +L+ S I DK+ GLQ GADDYI+KPFN EL+ RI + I Sbjct: 61 NLIPKIKNID-DIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHIS 119 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + L + GDL++ LD + ++ I+LT KE++++ L KN ++E LN Sbjct: 120 SDSKKKVKDLTI-GDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLN 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + +D+ I +LRKKL +NYI+T++ GY L E Sbjct: 179 KVWGYDFEGTTRAVDILIQRLRKKLGPC---QNYIKTLYKAGYKLDE 222 >gi|269793614|ref|YP_003313069.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095799|gb|ACZ20235.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 253 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++D++A+ ++ L+ F V V G++ ++ + D ++ D+ + + G E+ Sbjct: 23 VLLVDDEEAITGALAPFLERSGFEVRVAHDGQEALDTLDVWHADVVVSDVMMPRLDGREL 82 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R LR TPV +L+ + ++ L GADDY++KPFN +EL +RIRA++RRS G Sbjct: 83 VRRLRTRDDWTPVVLLTQVGESFERSAALDEGADDYLNKPFNPQELASRIRAVLRRSVGG 142 Query: 123 AQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + L +V+GDL V+ A+ V + G + LT + +++ L T+E L Sbjct: 143 EKPLSAADRLVSGDLLVDRTARRVFLAGAEVVLTPRASLLLDYLMTHPRELHTRERLLQA 202 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ P + +D + ++R+ L + AG Y+ETV GY Sbjct: 203 LWGFDLVPSTRAVDHRVAEIRRVLHDDAGAPRYVETVPNLGY 244 >gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + G+ Sbjct: 4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R AK P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 64 EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++S + G + +N + +TV+V G +I LT KE+ ++ LL+ E Sbjct: 123 TLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ + V I LRKKL I+TVWG GY Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|17227568|ref|NP_484116.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17135050|dbj|BAB77596.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 224 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 9/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY----EFDAIILDLGLTD 56 MRILL+EDD ++ +L Y+ D EDG E+ ++ ++D +ILD L Sbjct: 1 MRILLVEDDYEQLEPLQGILSEAG---YIVDTAEDG-EIAEWLISQKDYDLLILDWMLPT 56 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 I G + R R + + P+ +L+ + DKV GL +GADDY+ KP + EL+AR+RA+ Sbjct: 57 ISGLSLCRQYRCSGKTAPILMLTARDTTPDKVMGLDAGADDYLVKPADLVELLARVRALA 116 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RR + DL ++L TVE + ++ L+ +E +++E L N LT+ Sbjct: 117 RRVPNWQGDSLRVADLQLHLAYLTVEREQIKVELSPREARLLEYLMRHPNQVLTRSQIEE 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L++ EPE + V + KLR +L + +I TV+G GY L Sbjct: 177 ALWEWGMEPESNALTVLVRKLRHRLQQVDAAE-WIRTVYGMGYRL 220 >gi|253687171|ref|YP_003016361.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753749|gb|ACT11825.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 226 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL++DD L + L +E F+ G++G++ ++ A+ILD+ L D+ G Sbjct: 1 MNILLVDDDVELGDMLCEYLNAEGFSTSRVLTGKEGVDGAMSGDYTAMILDVMLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +VLR +R + PV +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 61 DVLRQIRKTQ-QLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +S+ +GDL +N + E +G LT E+ ++ELL ++K+ Sbjct: 120 DQPSTKRDESVAASGDLVLNPATRISEWRGQPFDLTASEFNLLELLLRSPERVVSKDELS 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R E + +DV I +R+KLS G IETV GY +R Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLSALPGSTMTIETVRSVGYRIR 226 >gi|224823765|ref|ZP_03696874.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224604220|gb|EEG10394.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED LA + L + + V V G + + +D ++LDL L + G Sbjct: 1 MRILLVEDQADLARWLARALTASGYVVDVIHDGLNADTALQTEPYDLVVLDLNLPRLSGK 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + PV IL+ + DKV GL+ GADDY+ KPF EL AR++A++RR + Sbjct: 61 DVLVRLRARHQTLPVLILTAHGELSDKVEGLELGADDYLVKPFELVELEARLKALLRRHQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + G L + + + R+ LT +E+ ++E L R + +E + ++ Sbjct: 121 GHDNEPLRCGALVFDKQERLFRLGTERLVLTRREHAVLEALMRRAGQPVNRERLFSQVFS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + I+++I +LRKKL G I T+ G GY+L E Sbjct: 181 LDDEVNPEAIEIYIHRLRKKLE---GSDVAITTLRGLGYLLEE 220 >gi|86605140|ref|YP_473903.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86553682|gb|ABC98640.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 246 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIP 58 RILL++D+ LA S+ L+ E +V V G EL + +D ++LD L + Sbjct: 3 RILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLS 62 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + + +R +TP+ L+ +++D+V GL +GADDY+ KPF EL+AR+RA++RR Sbjct: 63 GLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122 Query: 119 SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G + + + GDL ++ + + QG IHL+ KE++++E LT E Sbjct: 123 AAGPGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ G D P ++ + L ++ G I V+G+GY A+D Sbjct: 183 RVWAGEDPPSSNVLAAQVRLL-RRRLRLPGSPELIHAVYGKGYRFGPVAED 232 >gi|77745283|gb|ABB02542.1| response regulator [Lactobacillus reuteri] Length = 229 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 129/226 (57%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + G+ + +L + IILDL + +I G Sbjct: 1 MKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKKALTKLNTNPDIGLIILDLMMPEIDG 60 Query: 60 FEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 +V++ RV K S P+ +LS + DK++GL +GADDY++KPFN E++AR+++++RR Sbjct: 61 MDVIK--RVRKDSDIPILVLSAKPADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118 Query: 119 SRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S+G + ++ G L +N D+ V+ ++G I LT E+ ++ LL+ N + + Sbjct: 119 SQGEVTNDQPHILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADD 178 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 179 IFERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224 >gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 331 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 +IL+++D+ + EL+ + ++ Y+ + DG FD +ILDL + + Sbjct: 106 KILIVDDEPRIR---ELIREHLQYSGYICEEAADGTAALTQLSGGAFDLVILDLMMPFMD 162 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G LR +R I+TPV IL+ DK+ GL+SGADDY+ KPF+ ELVAR++A++ R Sbjct: 163 GMTCLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLNR 222 Query: 119 S---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + A + G+L+++ + TV V G + LT KE+ ++ L+ K L++E L Sbjct: 223 TMPKPAAASDTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKIL 282 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ E + +D + LR L ++YI TVWG GY +A Sbjct: 283 QKVWNYDYFGEDRTVDTHVKMLRGHLGKC---RSYIATVWGIGYKFDPDA 329 >gi|254380481|ref|ZP_04995847.1| turgor pressure regulator [Streptomyces sp. Mg1] gi|194339392|gb|EDX20358.1| turgor pressure regulator [Streptomyces sp. Mg1] Length = 229 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ LA + + LK+ ++V G +E DA++LDLGL D+ G E Sbjct: 4 RVLVVDDEPQLARLLVINLKARKYDVDCAQDGGTALETVATCRPDAVLLDLGLPDMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V++ LR PV ++S E+K++ L +GADDYI+KPF+ +EL+AR+ A++RR+ Sbjct: 64 VIKQLR-GWSQVPVLVVSARHGSEEKIQALDAGADDYITKPFSMDELMARLGAVIRRTPT 122 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H ++++ T + +V+L A+ +G I LT E+ ++E+L + +++ L Sbjct: 123 HEPAAADEAVVETEEFTVDLLARKARRRGKSIRLTPTEWHLLEVLIRNRGRLVSQRRLLQ 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V++ LR+KL ++ T G GY Sbjct: 183 EVWGSSYGTQTNYLRVYMAHLRRKLEADPSHPRHLITASGMGY 225 >gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +ILL+ED++ ++ IE+ L E + V V G + +E + E+ I+LD+ + + G Sbjct: 4 FKILLVEDEEQMSMFIEMELTHEGYKVDVAYDGREALEKVENTEYQLILLDIMIPGLNGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R P+ +L+ S + DKV GL GA+DY++KPF EEL+ARIR R Sbjct: 64 EVCRRIRQFS-CVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARIRVYEREKL 122 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + D+ ++ V G I LT KEY +++ L + KN LT+E + ++ Sbjct: 123 VKSKFDEVKVKDIVMDNKTHQVWRSGREIELTKKEYDLLQKLLINKNIVLTRERLIEEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++DVFI LR K+ N + K I T+ G GYV+++N Sbjct: 183 GYDYVGDTNVVDVFIRYLRSKIDNGSKEK-LITTIRGVGYVIKDN 226 >gi|158336600|ref|YP_001517774.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306841|gb|ABW28458.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 114/221 (51%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD +A + L+ +++ V V GE G + +++ I+LDL L + G Sbjct: 1 MRILLVEDDDRIAKPLAEDLRHQHYVVDVAADGESGWHYTQTADYELILLDLMLPRLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR + S V +L+ ++ DKV GL +GADDY+ KPF +EL ARIRA+ RR Sbjct: 61 SLCQQLRRSGYSGFVLMLTAKDTLTDKVMGLDAGADDYVVKPFELDELAARIRALCRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ G L ++ + LT KEY ++E L T+ M L+ L++ Sbjct: 121 QIQPSILKQGALQLDPIHHHAHYGETLLDLTPKEYILLEHLLQHPGQVFTRAMLLDRLWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I LR KL A G IET++G GY L Sbjct: 181 LDRASSEGTVKTHISNLRCKLKAAGGSDQLIETLYGVGYRL 221 >gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + + +L+ E ++V V + G DG+ D ++LDL L + G + Sbjct: 3 RILIVEDEVSFSDPLSYLLRKEGYDVAVAETGPDGLAEFDKNGADLVLLDLMLPGLSGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V RALR + S PV +L+ S DKV GL+ GADDY++KP++ EL+AR++A++RR Sbjct: 63 VCRALR-QRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVKAVLRRLAE 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I G + ++++ TV V G L KE++++E+L LT+ ++ + Sbjct: 122 PEDLLPPTIEAGPVRMDVERHTVTVNGAPTSLPLKEFELLEMLLRNSGRVLTRMQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ +I TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKVEPDPARPVHIVTVRGLGY 222 >gi|313115387|ref|ZP_07800858.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622301|gb|EFQ05785.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 233 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +L+I+DDK L ++ ++ EN + V G +G+ L + + IILD+ + D+ GF Sbjct: 4 VLIIDDDKKLCALMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTCSLIILDVMMPDMNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +VL+ +R K + PV +L+ S EDKV GL+ GADDY++KPF EL+AR+ +++RR Sbjct: 64 QVLQKIR-EKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYT 122 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G+ + ++ D+ ++ +TV VQ + LTGKE+ ++ L+ K TK+ Sbjct: 123 TLNPVTGNEAATMLLKDMVIDKINRTVTVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + + + FI KLRKK+ YI+TV G GY + A Sbjct: 183 YTQVWTEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFNKEA 233 >gi|289677021|ref|ZP_06497911.1| two component transcriptional regulator [Pseudomonas syringae pv. syringae FF5] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 118/230 (51%), Gaps = 5/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD+ +A I L ++ N+ + +FD +ILDLGL D G Sbjct: 1 MHVLLCEDDELIASGIVAGLHAQGLNLDRVGSASAAHAILDAAQFDVMILDLGLPDEDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR+LR + PV IL+ ++D+V+GL +GADDY+ KPF+ EL AR+ +VRR Sbjct: 61 SLLRSLRSRGHNIPVLILTARDDVDDRVKGLHAGADDYMVKPFDLRELFARLHTLVRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G L+ + + + G I L+ +E ++ L L+ E + +Y Sbjct: 121 GRTVNHIEHGILTYDPSTRETWLSGTAIDLSRREQAVLLALLNNPGRVLSLEQLKDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 DE E ++V I LR+KL G IETV G GY L + ++C Sbjct: 181 FTDEVESNALNVHIFHLRRKL-----GVQIIETVRGSGYRLGVASSLQSC 225 >gi|325696360|gb|EGD38251.1| DNA-binding response regulator [Streptococcus sanguinis SK160] Length = 234 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 3/203 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVWA 180 Query: 181 GRDEPEVK--IIDVFICKLRKKL 201 ++ ++ + ++I LR+KL Sbjct: 181 NDEDEDLDEGFVWIYISYLRQKL 203 >gi|325275459|ref|ZP_08141389.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099410|gb|EGB97326.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 223 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ L LKS V V G E+ +LD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVALALKSLGLTVDVLHDGVAADLALASEEYAVAVLDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRGRGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGPLVYDLDTRRFALGDDNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+++I +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GQPVAIVTFRGLGYLL 218 >gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] Length = 237 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ ++ L+ F V GE+G+ + D ++LDL L + G E Sbjct: 4 KVLVVDDEQSIVTLLQYNLEQSGFEVITAFDGEEGLSKIFSEDPDIVVLDLMLPKMDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +A+R K P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RRS+ Sbjct: 64 VCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRRSQA 123 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q I+ G L + + G I LT KE++++ L R+ +T+E Sbjct: 124 LRQHESEKENKEIIIGKLKILPEHFEAYRNGELIDLTPKEFELLIYLIERQGRVITREHM 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN +++ + +I+DV I LR+K+ YI+TV G GY L Sbjct: 184 LNSVWNYEFAGDSRIVDVHISHLREKIEENPKQPQYIKTVRGLGYKL 230 >gi|218662767|ref|ZP_03518697.1| probable two-component response regulator protein [Rhizobium etli IE4771] Length = 223 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED+K LA ++ L T D +EL + +DAI+LD L D G Sbjct: 1 MRILLIEDEKELAEALTAALGKHGIVTDHTVHLADAVELTRQNPYDAILLDRRLPDGEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR TP+ +L+ +++ +++V GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 61 RFIPELRRTGKDTPIIVLTALNAPKERVEGLDLGADDYLGKPFLVEELMARLRAVLRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ I G + ++ +V V + L +E ++ L+ RK T+ + +Y+ Sbjct: 121 SLSELKITAGRMVIDPLHLSVTVGDTPLDLPRRELLVLAALARRKEKTVLRSTLEAAVYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E + +D I +LRK+L++ AG + I + G GY+++E Sbjct: 181 YEEEIQSNALDAHISRLRKRLAD-AGAEVSIHNIRGVGYLMKE 222 >gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72] gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115] gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150] gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330] gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408] gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355] gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 233 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G++ +E+ + + D +ILDL L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRADL 121 Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + G+L + DA + G + LT +E++++ L+ +T+E Sbjct: 122 VVENQVEESGPNELTIGELQILPDAFVAKKHGKELELTHREFELLHHLATHIGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232 >gi|19553859|ref|NP_601861.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391500|ref|YP_226902.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|145296659|ref|YP_001139480.1| hypothetical protein cgR_2566 [Corynebacterium glutamicum R] gi|21325434|dbj|BAC00056.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41326842|emb|CAF20686.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|140846579|dbj|BAF55578.1| hypothetical protein [Corynebacterium glutamicum R] Length = 241 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++ LA I L L F+ G + D +ILDLGL + G E Sbjct: 15 RVLIVEDERPLARMISLYLSKAGFDTTTIHDGAAAPDKVAHLRPDVVILDLGLPGLDGLE 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R A + +L+ S D++ GL+ GADDYI+KPFN ELV RI++++RR R Sbjct: 75 VCKRIR-AFTDCYILMLTARGSERDRITGLEIGADDYITKPFNIRELVIRIQSVMRRPRK 133 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ + G + ++ A V V+G + LT E+++++ L + +++ ++ Sbjct: 134 IDETIQNGLTLTYGHIELDTLAHEVTVKGVGVTLTRTEFELLQALMHKPGEAVSRRDLVS 193 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + +I+DV I LR+KL A G ++I+T+ G GY Sbjct: 194 QVWDTTWVGDERIVDVHIGNLRRKLEAPAPGSHFIDTIRGVGY 236 >gi|158318242|ref|YP_001510750.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113647|gb|ABW15844.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 270 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ F+V G++ + + D +ILD+ L D GFE Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR V L+ + DK+ GL G DDYI+KPF EEL+AR+RA++RR+R Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A L+ D+ ++ DA V + L+ E+ ++ N L++ L Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++D + E ++D ++ LR+KL G I T G GY LR Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQ--HGPPLIHTQRGFGYALR 246 >gi|116629368|ref|YP_814540.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|282850958|ref|ZP_06260332.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311110978|ref|ZP_07712375.1| DNA-binding response regulator DltR [Lactobacillus gasseri MV-22] gi|116094950|gb|ABJ60102.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|282557910|gb|EFB63498.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311066132|gb|EFQ46472.1| DNA-binding response regulator DltR [Lactobacillus gasseri MV-22] Length = 221 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 119/203 (58%), Gaps = 1/203 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ + ++S N++V G D +EL K +D IILD+ + + G Sbjct: 1 MKILLAEDEEQLSRVLVAAMQSVNYDVDAVFNGRDAVELAKKNSYDVIILDIMMPIMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ +R + T V +L+ + I+D+V GL SGADDY++KPF+ +EL+AR+R+ RR Sbjct: 61 TALKQIRKSGDKTYVLMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLRSKERRDD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + GDL++N+ + + V + I L KE Q++ L L + + L H++ Sbjct: 121 QYTPNEVEVGDLALNVSEQEL-VSHNSIRLGSKETQLLNYLMLNEGKEFSTSDLLAHVWK 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203 D+ +++ ++I LR+KL + Sbjct: 180 DEDDANEEVVWIYISYLRQKLQS 202 >gi|295110799|emb|CBL24752.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 221 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 12/221 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNV----YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 IL+I+DD+ + ++ +LK+E++ V YV D + +F FD I+LD+ L + Sbjct: 4 ILVIDDDEKILELVQEVLKNEHYIVETRSYV-----DNTNIGEFEGFDLILLDIMLPFLD 58 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+E+L ++ I+ PV LS SS KV+GL SGADDYI+KPF+ ELVAR++ +RR Sbjct: 59 GYEILERIKNI-ITCPVIFLSAKSSEGAKVKGLMSGADDYITKPFSIRELVARVKVALRR 117 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + I+ L N D+ ++++ I LT E+++ ++L +K+ +L Sbjct: 118 NLKNGSNGILINGLVFNQDSNSIKLDNGEILLTKNEFRICKILVQNSGKIFSKDELYEYL 177 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 YD +++ I FI +RKK G + I+T+WG GY Sbjct: 178 YDLDANAQLRTITEFIYSIRKKFKTL--GLDPIKTIWGIGY 216 >gi|262279620|ref|ZP_06057405.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus RUH2202] gi|262259971|gb|EEY78704.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus RUH2202] Length = 228 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 6 MRILIIEDEIKIATYLVKGLKESGYQAECIHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 65 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ LR +KI PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR Sbjct: 66 SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL ++L A V G+ I L+ E+ ++ L L K +T+ + ++ Sbjct: 124 QYLQENELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + IDV + +LR K+ K I T+ G GY Sbjct: 184 NINFDTDTNFIDVAVRRLRSKIDEGYELK-LIHTIRGLGY 222 >gi|226312596|ref|YP_002772490.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095544|dbj|BAH43986.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 225 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFN--VYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 MR+LL ED L I MLK + + +VT+ G++ L +D ++LD + Sbjct: 1 MRVLLAEDQLLLGKIIAHMLKEKGGHDVKWVTN-GQEAYNLIIDSYYDVLVLDWMMPQKD 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + + LR S + +L+ ++E+++ GL +GADDY+ KPF +EL+AR+RA+ RR Sbjct: 60 GVTLCKELREQGYSGAILMLTAKDTLEERIEGLDAGADDYLVKPFESDELLARLRALSRR 119 Query: 119 SRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + Q +I + +N +++ G I LTGKE+ +++LL + T LT+++ L+ Sbjct: 120 NFAPIQEDIIEVNGIRMNRSKQSITRDGEEIQLTGKEFALLDLLVRNQGTVLTRDLILDR 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ G E +DV+I LRKK+ +A K I ++ G GYV+ ++ Sbjct: 180 IWGGEMEVASNSVDVYITLLRKKI-DAPSQKPLIRSIRGVGYVIEKS 225 >gi|209520046|ref|ZP_03268823.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209499531|gb|EDZ99609.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 247 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 14/229 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59 IL+++DD + + L F V E+G+ L + + + ++LD+ + ++ G Sbjct: 5 ILIVDDDPVVRDLVSEYLHGRGFQVATL---ENGLALQRRLQRERPALVVLDIMMPELDG 61 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 LRALRVA PV +L+ + D+V GL+ GADDY+ KPF ELVARIR ++RR Sbjct: 62 ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRR- 120 Query: 120 RG-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RG ++ G VN A+ + G RI L E+ M+++ T LT+ Sbjct: 121 RGSIAPGAPEQRAPYHFGRFEVNFPARELRRDGERITLRSSEFAMLKVFVTHAMTVLTRA 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L L+ + + +DV I +LR+ + Y++TVWGRGYV Sbjct: 181 QLLEKLHGNSEAHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229 >gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 235 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 129/227 (56%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L+ E + V V GE +E + D IILDL L I G E Sbjct: 4 KILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAENPDLIILDLMLPKIDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R AK + P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 64 VAKRVR-AKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + I GDL+++ +A TV +G I+LT +E++++ L+ + +E Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +V+ +DV + +LR+K+ + ++ T G GY L Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229 >gi|71734320|ref|YP_276098.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. phaseolicola 1448A] gi|257486549|ref|ZP_05640590.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628131|ref|ZP_06461085.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649903|ref|ZP_06481246.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. aesculi str. 2250] gi|298488665|ref|ZP_07006694.1| DNA-binding response regulator TctD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554873|gb|AAZ34084.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. phaseolicola 1448A] gi|298156738|gb|EFH97829.1| DNA-binding response regulator TctD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871254|gb|EGH05963.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889487|gb|EGH22148.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. mori str. 301020] gi|330989046|gb|EGH87149.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010032|gb|EGH90088.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 223 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G E+ ILD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALSSEEYAVAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+ +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGVLAYDLDTRRFTLGEELLALTSREQAVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I++++ +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVAIVTFRGLGYLL 218 >gi|154245228|ref|YP_001416186.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159313|gb|ABS66529.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 225 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED++ ++ L++ F V D E FDAIILDLGL D G Sbjct: 1 MRILLVEDNERMSALAADALRTAGFAVDAVHAAADAEEAVSTTPFDAIILDLGLPDRDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR ++ P+ +L+ + GL GADDY+ KPFN +EL+AR+RA++RR Sbjct: 61 DLLDTLRRKGVAQPILVLTARDGAPSVIAGLNGGADDYMRKPFNVDELIARVRALLRRPG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G++ ++ A+ V G + L+ KE +ELL R ++K LY Sbjct: 121 SALGVSLKEGNVELDTIARQARVDGVGLDLSRKEAAALELLMRRTGAVISKPALEETLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V I +LRKKL+ AG I T+ G GY+L Sbjct: 181 YGEEVSSNAVEVLIHRLRKKLAG-AGAVVEIHTLRGIGYLL 220 >gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 119 KKTEVTVSHEVIEAGEITICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|289450472|ref|YP_003474684.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185019|gb|ADC91444.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 239 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 14/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ + ++L + + F V + GE +E Y + +ILDL L G+E Sbjct: 3 KVLVVDDDRNICELVQLYFEKDGFQVKTVNDGEMALEEIDKYNPNVVILDLMLPGKDGYE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ DK+ GL+ GADDYISKPF+ +ELV R + ++RR+ Sbjct: 63 VCREIRKTS-NVPILMLTARGDTLDKIVGLELGADDYISKPFDPKELVVRAKTVLRRTEA 121 Query: 122 ------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 H I DL ++ + TV G RI + KE +++ L+ N Sbjct: 122 ACPEAKAIDNDDHPAEQITHKDLVIDKSSYTVTFHGTRIDMPPKELELLYFLASHPNRVF 181 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 +E L ++ E + +DV I ++R+K+ + ++ I+TVWG GY Sbjct: 182 NREQLLGQVWGYDFYGESRTVDVHIKRVREKIDDIGEHPSWDIKTVWGVGY 232 >gi|81427892|ref|YP_394891.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104605|gb|AAD10265.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609533|emb|CAI54579.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 228 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + +K+E + G++ + ++ D +ILD+ + ++ G Sbjct: 1 MKILIVDDDKEIVELLSIYVKNEGYEPIQAFTGKEALTKIATNPGIDLMILDIMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++A+R P+ ++S ++ DK++GL +GADDY+SKPFN E++AR+++++RRS Sbjct: 61 IEVIKAVR-KDSQVPILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRRS 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L + D+ V + G +I LT E+ ++ LL+ N + + Sbjct: 120 QQQVTNEVPDILEVGPLVIKRDSHEVTTIAGKQIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ IETVWG GY Sbjct: 180 FERVWKQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGY 224 >gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 234 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------FDAIILDLGLT 55 R+L+++DD + ++E L E F V G I+ + FD ++LDL L Sbjct: 3 RLLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLMLP 62 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G +V R LR + TP+ ++S + D+V GL+ GADDY+ KPF ELVAR RA+ Sbjct: 63 GVGGLDVCRHLRRSDPHTPILMVSARDTETDRVLGLELGADDYLVKPFGLRELVARCRAL 122 Query: 116 VRRS-----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +RRS R +I GDLS+ D V +G R++L+ KEY+++E + Sbjct: 123 LRRSQQTIERFPVGQIIHHGDLSLYPDEFRVTREGERVNLSPKEYRLVEFFMQNPGRVWS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ ++ + K +DV I LR+KL +I TV G GY Sbjct: 183 RNQLIDQVWGTDYVVDTKTVDVHIRWLREKLEVNPSAPEHILTVRGFGY 231 >gi|126736726|ref|ZP_01752465.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] gi|126713841|gb|EBA10713.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] Length = 249 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD LA + L + F V GEDG+ + F A+ILD+ L I G EV Sbjct: 15 VLLVEDDTRLAEMVASYLGANGFGVTTAKTGEDGLGVLDDTPFKAVILDINLPGIDGLEV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R ++ A+ TP+ +L+ D++ GL+ GADDY+ KPF EL+AR+RAI+RR + Sbjct: 75 CRRMK-ARSETPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAIMRRGQTP 133 Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q++ G L ++ + +V G LT ++Q++ +L+ L++E+ ++ L Sbjct: 134 TQTVTTPLQFGRLQIDPGSMLAKVDGRSCDLTSHQFQLLLVLARAPGRVLSRELLMDALR 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IDV I ++R ++ + I TV G GYV Sbjct: 194 GETLEAFDRSIDVHISRIRAEIEDDPKNPRRIITVRGAGYVF 235 >gi|327490080|gb|EGF21868.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|332367393|gb|EGJ45126.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 234 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 3/203 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVWA 180 Query: 181 GRDEPEVK--IIDVFICKLRKKL 201 ++ ++ + ++I LR+KL Sbjct: 181 NDEDEDLDEGFVWIYISYLRQKL 203 >gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 226 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L+ E + V G + + + D ++LD+ L + GFE Sbjct: 4 RILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAFQEHHPDLVLLDVMLPGMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V ALR A+ + P+ +L+ S D V GL++GADDY+ KPF ELVAR+RA +R Sbjct: 64 VCAALR-AESNVPIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARLRGRED 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + I DL +++ V I LT E+ ++ L+ + ++E L ++ Sbjct: 123 AGEERIALADLEIDVPGHAVRRGDRLIALTPLEFDLLATLARTPSKVFSREELLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEKPEIVVTVRGVGY 220 >gi|188578300|ref|YP_001915229.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522752|gb|ACD60697.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 230 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 9/223 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDIPGF 60 +L+ED+ LA +I ++ + D DG+ + ++ FD ++LD+GL + G Sbjct: 1 MLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 57 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R +TPV +L+ IED+V+ L GADDY+ KPF+ E AR R ++RR+R Sbjct: 58 RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G + A T+ + G I L +EY++ ++L R + K+ N L+ Sbjct: 118 GKASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG 177 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D+ I++++ +LR+KL+ A I TV G GY L E Sbjct: 178 FDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 217 >gi|300932509|ref|ZP_07147765.1| two-component system response regulator [Corynebacterium resistens DSM 45100] Length = 235 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ ++ +++ LK + F+V D G+ +++ Y+ DA ILD+ + + GF Sbjct: 10 KVLVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVDEYQPDAFILDVMMPGMDGFS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR PV L+ +ED++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 70 LLNKLRAKGHDAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSP 129 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++I DL+++ D V G + L+ E++++ L + L+K L+H+ Sbjct: 130 EDEKESNVISYEDLTLDDDMHEVTKAGKVVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +++ ++ LR+K+ I TV G GYVLR+ Sbjct: 190 WNYDFGGDGNVVESYVSYLRRKID--TDDPRLIHTVRGVGYVLRK 232 >gi|261363894|ref|ZP_05976777.1| DNA-binding response regulator [Neisseria mucosa ATCC 25996] gi|288567893|gb|EFC89453.1| DNA-binding response regulator [Neisseria mucosa ATCC 25996] Length = 223 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 13/226 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG- 59 MR+LL EDD +A ++ LK Y D ++G ++ + L L +PG Sbjct: 1 MRVLLAEDDNMIAQAVAANLKDSG---YAVDWVKNGSQVSTALQAQNYDLLLLDLGLPGK 57 Query: 60 --FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 +VL +R TPV I++ + ++ GL GADDYI KPF+ EL AR+RA++R Sbjct: 58 DGLDVLTQIRHEGSKTPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R GH+Q+L+ G L++N VEV+G + L+ KE+ +++ L +R L++ Sbjct: 118 RHSGHSQTLLTNGALTLNPATYQVEVKGEDKPVLLSNKEFAVLQALMMRPGIILSRSDLE 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +Y +E E +D I LRKKL GK +I+ V G G+++ Sbjct: 178 DKIYGWGEEVESNAVDFLIHALRKKL-----GKEHIQNVRGVGWLV 218 >gi|212712531|ref|ZP_03320659.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM 30120] gi|212684747|gb|EEB44275.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM 30120] Length = 232 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV + GE ++ D ++LD+ + G E Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQID-SSIDLLLLDVMMPKKNGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S DKV GL+ GADDY+ KPFN ELVARIRA++RRS Sbjct: 62 TLKELRQIH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSNW 120 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ + L +N + + LTG E+ ++ LL+ +++E Sbjct: 121 SEQTQGDNSNTPTLQVDKLQLNPGRQEASFDNEILDLTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G+ + +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLM 228 >gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 236 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ LK E + V+ G + +E + + D I+LD+ L G E Sbjct: 4 KILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVEEVKPDLILLDIMLPQRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHQQ 122 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A I G L ++ DA V +G I LT +E++++ L+ +T+E Sbjct: 123 IAAKAGEEEETNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + +I T G GY LR Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLR 231 >gi|330468337|ref|YP_004406080.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811308|gb|AEB45480.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 230 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + ++ + L++ ++V V G D ++ + D ++LDLGL D+ G E Sbjct: 3 RILVVDDEPQILRALGINLRARGYDVQVAATGTDALKAAARHPPDLVVLDLGLPDLDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V+R LR P+ +LSG + +DKV L +GADDY++KPF +EL+ARIRA+ RR Sbjct: 63 VIRGLR-GWTGVPIIVLSGRAGSDDKVTALDAGADDYVTKPFGVDELLARIRAVTRRHTT 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + G A S G +V+L + V G + LT ++ ++E L +T+ Sbjct: 122 ADTADGRAGSQARVGRHTVDLAERIVTRDDGTEVRLTPTQWGVLERLLRHPGKLITQRQL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ + E + ++ +LR+KL ++ T G GY R Sbjct: 182 LQDVWGPEYQNETGYLRQYMAQLRRKLETDPARPRHLITEPGMGYRYRP 230 >gi|323351005|ref|ZP_08086662.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|322122729|gb|EFX94438.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] Length = 234 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESRMMEFLMLNAQKSLSTQEIFRHVW- 179 Query: 181 GRDEPE---VKIIDVFICKLRKKL 201 +DE E + ++I LR+KL Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203 >gi|257484807|ref|ZP_05638848.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011147|gb|EGH91203.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD ++ L + V T G DG+ L +D I+LD+ L I G+ Sbjct: 1 MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A+ PV L+ ++D++RGL+ GADDY+ KPF+ EL+ RIR I+RR Sbjct: 61 QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++L + V Q I LT KE+ ++ LL R+ L++ + ++D Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++DV I +LR K+ K I TV G GYV Sbjct: 180 MNFDSDTNVVDVAIKRLRSKVDLPYPVK-LIHTVRGIGYV 218 >gi|238920215|ref|YP_002933730.1| DNA-binding transcriptional regulator PhoP [Edwardsiella ictaluri 93-146] gi|238869784|gb|ACR69495.1| transcriptional regulatory protein PhoP [Edwardsiella ictaluri 93-146] Length = 224 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L H + + ++ V + ++ + D I+DLGL G Sbjct: 1 MRILVVEDNNLLRHHLSVQIRELGHQVDAAENAKEADFFVREQGPDIAIVDLGLPGEDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R R +I+ P+ +L+ S ++KV L++GADDY++KPF+ EE++AR++A++RR+ Sbjct: 61 SMIRRWRSEQITLPILVLTARESWQEKVAALEAGADDYVTKPFHLEEVLARMQALMRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I +L + + V I LT EY ++E L ++K+ + LY Sbjct: 121 GLASQIISMPPFQADLSRRELRVNETLIKLTAFEYTIMETLIRNSGKVVSKDALMLQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E IDV + +LRKKL + + I TV G+GY Sbjct: 181 DAELRESHTIDVLMGRLRKKLQSEYPA-DVITTVRGQGY 218 >gi|256379954|ref|YP_003103614.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255924257|gb|ACU39768.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 226 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + ++ + L + + V G + + D ++LDLGL D+ G E Sbjct: 3 KVLVVDDEPQIVRALRINLSARGYQVLTAHDGAAALRAAAEGKPDVVVLDLGLPDVDGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ LR + P+ +LS + DKV L +GADDY++KPF +EL+AR+RA VRRS Sbjct: 63 VIAGLR-GWTTVPIIVLSARADSTDKVEALDAGADDYVTKPFGMDELLARLRAAVRRSAA 121 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A ++++ TG +V+L AK V + +HLT E+ ++E+L + + L + Sbjct: 122 PADAGEAVVRTGAFTVDLVAKKVHREDAEVHLTPTEWGLLEVLVRNPGKLVAQRQLLQEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + V++ +LR+KL ++ T G GY Sbjct: 182 WGPAYAKETHYLRVYLAQLRRKLEPEPSRPRHLVTEPGMGY 222 >gi|170695744|ref|ZP_02886886.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170139349|gb|EDT07535.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 247 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 12/228 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59 IL+++DD + + L+ F V E G+ L + + + ++LD+ + ++ G Sbjct: 5 ILVVDDDPVVRELVSQYLEGRGFKVATL---EHGMALQRKLQDERPALVVLDIMMPELDG 61 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 LRALRVA PV +L+ + D+V GL+ GADDY+ KPF ELVARIR ++RR Sbjct: 62 ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S ++ G VN A+ + G RI L E+ M+++ T LT+ Sbjct: 122 GSIAPSAPEQRAPYRFGRFEVNFPARELRRDGERITLRSSEFAMLKVFVTHAMTVLTRGQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L L+ + + +DV I +LR+ + Y++TVWGRGYV Sbjct: 182 LLEKLHGNSETHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229 >gi|209548309|ref|YP_002280226.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534065|gb|ACI54000.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + I L V G DG+ + +D I++D L + G Sbjct: 1 MRILLIEDDRKTSDYIAKGLSEAGHVCDVFGDGRDGLFQAQREAYDVIVVDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R+LR AK+ T L+ + ++D+V GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 61 AIIRSLRAAKVGTSALFLTSIGGVDDRVEGLEAGGDDYLTKPFAFSELLARVNALGRRPP 120 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q ++ DL ++L + G I L +E+ ++E+L + +TK M L ++ Sbjct: 121 VQEQKTVLKVADLELDLIRREARRAGQAIELQPREFTLLEVLMRGEGRVITKTMLLERVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P+ +++ I +LR K+ + + TV GY L Sbjct: 181 DFHFDPKTSVVETHISRLRAKVDRPFQAQ-LLHTVRNTGYSL 221 >gi|53803484|ref|YP_114633.1| DNA binding response regulator KdpE [Methylococcus capsulatus str. Bath] gi|53757245|gb|AAU91536.1| DNA binding response regulator KdpE [Methylococcus capsulatus str. Bath] Length = 231 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD + + L+S+ F VY D G GI + ++LDLGL D G EV Sbjct: 8 VLVIEDDPPMRRFLRTSLRSQGFQVYEADTGNRGIIEAGLRRPEVVVLDLGLPDRDGVEV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ALR + P+ +LS S+ E K+ L +GADDY++KPF EL+ARIR +RRS G Sbjct: 68 VKALREWTL-LPIIVLSARSTEEHKIEALDAGADDYLTKPFGIGELLARIRVALRRSAGV 126 Query: 123 AQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G L ++L +TV V I L EY+++ L+ LT L + Sbjct: 127 TVNVPDEGGAGGGLRIDLLRRTVAVGEREIRLPPTEYRLLAALARHAGKVLTHRQLLLEV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + + +++ +LR+KL Y+ T G GY L+ Sbjct: 187 WGPSHVEDCHYLRIYMSQLRQKLETDPAKPEYLITESGVGYRLK 230 >gi|148549507|ref|YP_001269609.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148513565|gb|ABQ80425.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 223 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ L LKS V V G E+ +LD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVALALKSHGLTVDVLHDGVAADLALASEEYAVAVLDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRGRGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L +LD + + + LT +E +++ L R ++KE ++ Sbjct: 121 LGGERQQRCGPLVYDLDTRRFTLGDDNLTLTSREQSVLQALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+++I +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GHPVAIVTFRGLGYLL 218 >gi|150391046|ref|YP_001321095.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950908|gb|ABR49436.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 231 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+IEDDK + + I L LK+ + G +G+ L + D I+LDLGL DI G Sbjct: 5 LKLLIIEDDKYILNFISLSLKTSGYAFETARTGLEGMSLFYSHHPDIILLDLGLPDIDGI 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++++R+ P+ I+S +K+ L GADDYI+KPF+ EL+ARIR + R+ + Sbjct: 65 DVIKSIRMIS-QVPILIVSARGQENEKIAALDEGADDYITKPFHMGELMARIRVVQRKLK 123 Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q + L+++ + + V V + +H+T EY+++ LL K LT L Sbjct: 124 KAMQPENIEIFQMDYLTIDYEKRIVLVDNNEVHVTPIEYKLLLLLVANKGKVLTHNYILK 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + K I VF+ LR+K+ +I T G GY Sbjct: 184 EIWGYGETGDSKSIRVFMANLRRKIEKDKASPRFILTEVGVGY 226 >gi|330831577|ref|YP_004394529.1| transcriptional regulatory protein CpxR [Aeromonas veronii B565] gi|328806713|gb|AEB51912.1| Transcriptional regulatory protein CpxR [Aeromonas veronii B565] Length = 226 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 7/226 (3%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +++DD L + +L E F V V + GE+G++ FD ++LD+ + + GF +L Sbjct: 1 MVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQRLAEQSFDLVLLDVMMPKLNGFAMLT 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS----- 119 LR TPV +L+ +D+V GL++GADDY++KPF+ EL+AR+RAI+RR+ Sbjct: 61 KLRKTH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQSAPP 119 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 RG++ + D+ + + + LT E+ ++E L ++K + Sbjct: 120 QRGNSSDEVHFMDIVLQPGLQQARCGEQLLELTATEFGLLECLLRNPGQIVSKSHLSEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + EP + ID+ + LRKKL + G+ +TV GRGY+ E Sbjct: 180 LGKKLEPFDRAIDMHLSNLRKKLPDRTDGQPRFKTVRGRGYLWLEQ 225 >gi|304439017|ref|ZP_07398937.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372506|gb|EFM26092.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 228 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 129/224 (57%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ +D+ A+A I+ LK E + GE+ +E+ K E+D +ILD+ + + GFE Sbjct: 3 RVLVCDDETAIADIIKFNLKREGYEADTCSNGEECLEILKDNEYDLLILDVMMPKLDGFE 62 Query: 62 VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR LR K S PV +L+ D+V GL+ GADDY+ KPF+ EL+AR++A +RR Sbjct: 63 TLRELR--KFSYIPVIMLTAKDDEVDRVLGLELGADDYVVKPFSMRELIARVKANLRRRE 120 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +S+ I GDL ++L V+ +G I LT +E+++++ L+ + ++E L Sbjct: 121 VEVKSVEVEETIERGDLEIDLKRYMVKKRGKTIELTLREFELLKFLAQNEGKVFSREELL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ +++ +DV + +LR+K+ + YI TV G GY Sbjct: 181 SSVWGYEYFGDIRTVDVTVRRLREKIEDKDKDYRYIVTVRGVGY 224 >gi|227536214|ref|ZP_03966263.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300772173|ref|ZP_07082043.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|227244111|gb|EEI94126.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300760476|gb|EFK57302.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 234 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 21/237 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED++ L +I+L L+ E + V G+ +++ K F+ IILD+ + +I GF+ Sbjct: 6 RILLVEDEEHLLEAIKLNLELEGYRVTTATDGKKALKVFKEERFNLIILDVMIPEIDGFQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R+ P+ L+ +S ED++ GL+ GADDY+ KPFN EEL+ R+ +VRR Sbjct: 66 VAETIRLQNSEVPIMFLTAKNSSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRRG-- 123 Query: 122 HAQSLIVTGD-----LSVNLDAKTVEVQGHRIH--------LTGKEYQMIELLSLRKNTT 168 + GD S + KT+ + +H LT KE +++LL R+N Sbjct: 124 ------MKGDDLKELNSYTIGDKTIYFNSYELHHADGTITSLTKKETMLLKLLIERRNEA 177 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++E L +++ P + ID FI RK Y ++ G GY +N Sbjct: 178 VSREQILETVWNYDVYPSTRTIDNFILTFRKYFEPDQKHPIYFHSIRGVGYKFTDNP 234 >gi|329941810|ref|ZP_08291075.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299527|gb|EGG43427.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 217 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/211 (32%), Positives = 121/211 (57%), Gaps = 4/211 (1%) Query: 12 LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71 LAH++ L +E ++V + G G+ + + E+ ++LDL L + G++V LR Sbjct: 3 LAHTLRTGLTAEGYSVDLAHDGRQGLWMARTGEYALVVLDLMLPGLNGYKVCAQLRREGN 62 Query: 72 STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD 131 +TP+ +L+ D+ L +GADDY++KPF+ LVAR+RA+VRR+ A ++ GD Sbjct: 63 ATPILVLTAKDGEWDQAEALDTGADDYLAKPFSYLVLVARLRALVRRAATVAPPVLAVGD 122 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP-EVKII 190 LS+++ + G R+ LT +E+ ++ELL+ R ++K L H + DE + ++ Sbjct: 123 LSLDVAGRVCRRAGTRVDLTPREFAVLELLARRAGQAVSKGDLLYHAWP--DEAVDPNLV 180 Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + LRKK+ + A + ++TV G GY L Sbjct: 181 EARVSSLRKKV-DTAFRRQSLQTVRGTGYRL 210 >gi|297565507|ref|YP_003684479.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849956|gb|ADH62971.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 222 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +A +E L+ + + G+ + L + + D ++LD+ L ++ G EV Sbjct: 2 VLVVEDEPEIAEILEGYLRRDGYRTERAADGKAALGLYRAAKPDLVLLDIQLPELDGLEV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 LR +R A +TPV +++ S DK+ GL+ GADDY++KPF+ E+VAR++A++RR+ Sbjct: 62 LRRIR-ADGNTPVILVTARSEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRANPL 120 Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +++ G L ++ + V R+ LT E++++E L+ T++ L Sbjct: 121 ESAATVLRAGPLEIDTEWVMARVGASRLELTPTEFRLLETLARTPGRAFTRQELLEAALP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E ++IDV + LRKKL AAG +ETV G GY L Sbjct: 181 DSDALE-RVIDVHLKNLRKKL-EAAGATGLLETVRGVGYRL 219 >gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 228 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 128/222 (57%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ + I + L S + G + + ++ D ++LD+ L + G E Sbjct: 7 KVLIVDDDENICEVINMYLISAGYETRRCHNGREACAVFGDFKPDLVLLDIMLPGVDGIE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV L+ GADDYI KPF +EL+AR++A++RR Sbjct: 67 VLKWIRKSS-EIPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRRYNY 125 Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ +I DL ++ ++ V +G I + KE++++ L+ KN T+E L ++ Sbjct: 126 DEKNTEIINYSDLVIDANSYNVVYKGVEIKMPPKEFELLHYLASNKNKVFTREQLLCEVW 185 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 G D P + + +DV I +LR+K+S GG+N+ IETVWG GY Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKIS---GGENWLIETVWGVGY 223 >gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1] Length = 234 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 118/230 (51%), Gaps = 14/230 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ L + L+ F V G + + D I+LD+ L D GFE Sbjct: 6 RLLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAVREQRPDLIVLDVMLPDFDGFE 65 Query: 62 VLRALR-----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 V+R LR A PV L+ + ED++ GL++G DDY++KPFN EELV RIRAI+ Sbjct: 66 VVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAIL 125 Query: 117 RRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR+ G A +V G L ++ D+ V G + L+ E+ ++ +L L+K L Sbjct: 126 RRTSGRQADGRLVVGMLELDPDSHQVTRDGRPVQLSPTEFSLLRVLMENAGQVLSKSQLL 185 Query: 176 NHLYD---GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G D+ I+ +I LR+K+ I TV G GYVLR Sbjct: 186 ELVWQYDFGGDD---SIVASYISYLRRKVD--LDEPKLIHTVRGTGYVLR 230 >gi|296131372|ref|YP_003638622.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296023187|gb|ADG76423.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 224 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 126/219 (57%), Gaps = 2/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD AL ++EL L F+V+ T LG + L + ++ + I+DLGL D+ G E Sbjct: 3 RLLLVEDDDALVRTLELTLGVHGFDVHATGLGAQALVLARTFQPEIAIVDLGLPDLDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+RALR A PV +LS + DKV L +GADDY++KPF +EL+AR+RA +RR Sbjct: 63 VVRALR-AWSDVPVLVLSARDAQHDKVGALDAGADDYVTKPFGMDELLARLRAALRRVSP 121 Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++++ T L ++ ++ V G +HLT E+ ++E L +++ L ++ Sbjct: 122 ADRAIVFRTEHLVIDRASRRVARDGAPVHLTPTEWSLLEALLRFPGRVVSRRELLQDVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + EV + V++ +LR+KL + ++ T G GY Sbjct: 182 PQYVQEVTYLRVYVAQLRRKLEESPAAPRHLLTEPGVGY 220 >gi|317500101|ref|ZP_07958336.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331087672|ref|ZP_08336599.1| hypothetical protein HMPREF1025_00182 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898586|gb|EFV20622.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330410364|gb|EGG89797.1| hypothetical protein HMPREF1025_00182 [Lachnospiraceae bacterium 3_1_46FAA] Length = 230 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD + ++ L+ E + G + + + + I+LDL L IPG EV Sbjct: 7 VLIVEDDVNINGLLKEALEKEGYICTQAFSGTEARMILQGERYSVILLDLMLPGIPGEEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 LR +R K +TPV IL+ +I+DKV L+ GADDY++KPF+ +E+ AR+ +RR+ Sbjct: 67 LRDIR-KKGNTPVIILTAKDTIDDKVEFLRGGADDYVTKPFDIKEVTARVEVQIRRAETT 125 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + +L +N TV+V + H+T +E+ ++ELL +KE + Sbjct: 126 GRKEEEHRFTYQELELNKGDFTVKVGNTELPHITKQEFSILELLLKHPKKVFSKEEMFEY 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + E K +DV I +RKK+ A K YIETVWG GY L Sbjct: 186 AWEEQYMGETKTLDVHISNIRKKIK-AVTDKEYIETVWGIGYRL 228 >gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 249 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + L+ F V G++ ++ D ++LD+ L D+ GF V Sbjct: 17 LLVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAERPDLVVLDVMLPDLDGFTV 76 Query: 63 LRALR------VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 +R LR + PV L+ DKV+GL GADDY++KPF+ EEL+ARIRAI+ Sbjct: 77 VRRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRAIL 136 Query: 117 RRSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR+ G A +V DL+++ A V G + L+ E++++ L ++K L Sbjct: 137 RRAGGPADDGRLVVADLTLDPAAHEVTRGGVPVSLSPTEFKLLHYLMANVGRVVSKAQIL 196 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLR 222 +H++ ++ I++ +I LR+KL + G G I TV G GY LR Sbjct: 197 DHVWAYDFGGDLSIVESYISYLRRKLDSGPGHGPKLIHTVRGIGYALR 244 >gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. PCC 7002] gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein SYNPCC7002_A0851 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. PCC 7002] Length = 251 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA-------IILDLGL 54 RIL++ED+ + I + L+ E + V+ D G G+ + + EF+A +ILD+ L Sbjct: 20 RILVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDIML 79 Query: 55 TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 ++ G ++ R LR + P+ +LS +S D+V GL+ GADDY++KPF+ ELVAR RA Sbjct: 80 PEVNGLDLCRFLRYQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARCRA 139 Query: 115 IVRRSR----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 ++RR + S+ D+S+ + V V+G + L+ KEY+++EL + Sbjct: 140 LLRRQQFIRSTPKNSVRQFKDISLFPEECRVTVRGEEVSLSPKEYRLLELFMSYPRRVWS 199 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + ++ + K +DV I LR+KL Y+ TV G GY Sbjct: 200 RDQLIEQVWGADFLGDTKTVDVHIRWLREKLELDPSQPEYLITVRGFGY 248 >gi|150378031|ref|YP_001314626.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032578|gb|ABR64693.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 222 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 122/229 (53%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV---YVTDLGEDGIELCKFYEFDAIILDLGLTDI 57 MR+LL+EDD+ L +++ + + V D E +E + D ++LDL L D Sbjct: 1 MRVLLVEDDEMLGDAVKTHVHRQGHAVDWALTRDEAEASLEAAPY---DLVLLDLRLPDG 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++L+ALR + PV I++ + D++ GL +GADDY+ KP + EL ARI A+ R Sbjct: 58 SGLDILKALRARRDEMPVIIMTAHDQVSDRIAGLNAGADDYLVKPVDLGELQARIHAVAR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R H + G ++V + + Q G + L+ +E+ +++ L RK ++K Sbjct: 118 RYGTHKLPDLTIGGVAVYPSERRISAQDGEEVLLSSREWAVLDRLIARKRAIVSKSQIEE 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LY E E ++V++ +LR+KL GK+ IETV G GY + +A Sbjct: 178 ALYAFGAEVESNTVEVYVSRLRRKL-----GKDAIETVRGVGYRISADA 221 >gi|289672518|ref|ZP_06493408.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. syringae FF5] gi|302186898|ref|ZP_07263571.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. syringae 642] Length = 224 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 125/222 (56%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +ST + +++ +E+KV+GL+ GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 EVLSRLR-KTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220 >gi|270290038|ref|ZP_06196264.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Pediococcus acidilactici 7_4] gi|270281575|gb|EFA27407.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Pediococcus acidilactici 7_4] Length = 229 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + +++ +K+E + G++ + +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V+R +R P+ +LS + DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MQVVREVR-KDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRS 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A ++ G L++N D+ V+ + G + LT E+ ++ LL+ N + + Sbjct: 120 EKDVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG+ IETVWG GY Sbjct: 180 FERVWQQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGY 224 >gi|225375673|ref|ZP_03752894.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM 16841] gi|257437566|ref|ZP_05613321.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii A2-165] gi|225212443|gb|EEG94797.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM 16841] gi|257199873|gb|EEU98157.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii A2-165] gi|295109640|emb|CBL23593.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 221 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 5/219 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDDK + I+ L+ N+ V+ T G + +E K D IILDL L I G E Sbjct: 3 KVLIIEDDKEICFMIKDHLEKYNYQVFFTFTGANALERVKELTPDLIILDLMLPFISGDE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI-RAIVRRSR 120 ++R +R + PV ++S S +KV + GADDY++KPF+ +EL+ARI R ++R + Sbjct: 63 LIRTIRKFS-NVPVIVVSAKSLTFNKVELFRLGADDYLTKPFDLDELLARIERNLLRSQK 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+LS++ +K V V I LT KEYQ++ELL+ + +K+ ++ Sbjct: 122 CTPNLCLKFGELSIDTASKIVTVADEIIVLTAKEYQLLELLAKYPDKVFSKQNLYESIWQ 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +I+ I LRKKL + G + I+TVWG GY Sbjct: 182 EPFARDNDVINTHISNLRKKL-RSEGCR--IKTVWGLGY 217 >gi|325519053|gb|EGC98554.1| two component heavy metal response transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 124/217 (57%), Gaps = 2/217 (0%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 ++ED+ ++ L+ F+V + G +G+ L + +D I+LD+ L + G+ VL+ Sbjct: 1 IVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGWGVLK 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 LR +TPV L+ ++D+V GL+ GADDY+ KPF EL+ARIR + RR Sbjct: 61 RLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPPRET 119 Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184 +V GDL +++ + V+ RI LT +E+ +++LL+ R L++ ++++D + Sbjct: 120 ERLVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDMNFD 179 Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++V I +LR K+ +A K I TV G GYVL Sbjct: 180 SDTNVVEVAIRRLRAKVDDAFPVK-LIHTVRGVGYVL 215 >gi|302340428|ref|YP_003805634.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301637613|gb|ADK83040.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 232 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 6/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + + +L E + V + GE +E +FD ++LDL L I GF V Sbjct: 7 ILVVDDEPHILQILHFLLTDEGYQVTTVETGEAAVETADSEDFDLVVLDLALPGIDGFSV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR I P+ ILS + V GL+ GA DY+ KPFN EL+ R+ ++ R+ G Sbjct: 67 CRTLRDKGI--PILILSSHDEDDYVVSGLELGALDYVRKPFNHRELILRVANLIGRNDGE 124 Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + IV+ +SVNLD++ V +G R+ LT EY ++ LL +K +T E L ++ G Sbjct: 125 ERPQGIVSEGVSVNLDSEEVLCRGERVRLTPTEYLLLVLLMKQKGAVVTWEEILREVW-G 183 Query: 182 RDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E + ++I V I +LR K+ I WGRGY Sbjct: 184 TEEWDGYRQMIKVNIQRLRTKVEQDPHNPRIIVNQWGRGY 223 >gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876] gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876] Length = 242 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ I + +N+ ++TV + G ++LT EY ++ L++ KN T E Sbjct: 135 NQNAIQVMENKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I +LR K+ +I+ VWG GY Sbjct: 195 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238 >gi|222055335|ref|YP_002537697.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221564624|gb|ACM20596.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 234 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 4/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ LA I L+ EN V + GE+ +E KF FD IILD+ L I GF V Sbjct: 8 ILLVEDEIHLARGICFNLELENLRVSHVESGEEALERVKFERFDLIILDVMLPGIDGFVV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R PV +L+ S D++ GL GADDY++KPFN +E + R++ ++RRS + Sbjct: 68 CKKVRELDARVPVLMLTARSDERDRIAGLAGGADDYLTKPFNLDEFLLRVKGMLRRSAWY 127 Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 I G+ V L + + I LT E +M+ L ++ + +++ L ++ Sbjct: 128 RPDPIEEGYRFGENQVYLLSYRAKTPQGEIDLTDLEVKMLSLFFQKEGEAIPRKVLLENV 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + E + +D FI +LRK Y +TV G GY Sbjct: 188 WGYASDAETRTLDNFIVRLRKYFEPDPAKPVYFQTVRGVGY 228 >gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodospirillum centenum SW] gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodospirillum centenum SW] Length = 234 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ L ++ L+ E F V GE+ + L ++LD L + G EV Sbjct: 9 ILIVEDEADLVTLLKYNLEKEGFRVISASDGEEALLLANEQAPHLVLLDWMLPLMSGLEV 68 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 R LR + TPV +L+ DKVRGL SGADDYI+KPF+ ELVAR+RA++RR + Sbjct: 69 CRQLRRNPKTRDTPVIMLTARGEEADKVRGLNSGADDYIAKPFSPTELVARMRAVLRRAA 128 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+ L+ D+ ++L A V G +HL E++++ ++E L+ ++ Sbjct: 129 PGLAEELLRFADVVMDLAAHRVRRNGRDVHLGPTEFRLLRHFMQHPGRVFSREQLLDVVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +DV I +LRK L N ++ I TV GY L +N Sbjct: 189 GHDVYVEPRTVDVHIRRLRKAL-NETDDQDLIRTVRSAGYALDQN 232 >gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759] gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759] Length = 235 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 126/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K + ++ L+ ++ V G + +E K ++D ++LD+ + G E Sbjct: 10 KVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAVEKIKNNDYDIVLLDIMIPVYTGIE 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R + P+ +L+ DK+ GL+ GADDYI+KPFN E+ AR++AI+RRS G Sbjct: 70 VCQMVREFS-NVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAILRRS-G 127 Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + + V LD++ V V G ++LT KE+ ++ELL N ++ L Sbjct: 128 KKQAPVKQSNVMEVNGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELL 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ + + +DV + +LR+K+ G YI T WG GY + Sbjct: 188 STIWGDSYPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGYFFK 234 >gi|159040471|ref|YP_001539724.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157919306|gb|ABW00734.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 228 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 5/218 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ +A + L L + F V++ G+ G+ + A +LD+ L +PG E+ Sbjct: 11 VLLVEDEATIADLVRLYLNRDGFGVHLERDGDAGLAAARRLRPVACVLDIALPGLPGTEI 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR A TPV L+ D+V GL+ GADDY++KPF+ ELVAR+RA++RR G Sbjct: 71 CRRLREAGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELVARLRAVLRRVAGP 130 Query: 123 AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 G ++++ D +TV G + LT E+ ++ L R T+E L ++ Sbjct: 131 PPGQPRRVGVVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWGY 190 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + DV + ++R KL +A + I T G GY Sbjct: 191 AVPAGTRTADVHVAQVRAKLGSA----SVIRTHRGVGY 224 >gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 228 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 128/222 (57%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD+ + I+L L+S + +++ G+ + Y+ D ++LD+ L G + Sbjct: 7 KVLIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFVEYKPDIVLLDIMLPQEDGID 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R A +TPV +L+ DKV L+ GADDYI KPF +ELVAR++A++RR+ Sbjct: 67 VLKWIRKAD-NTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRRANS 125 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +Q L G L +++ + TV I + KE++++ L+ KN T+E L + Sbjct: 126 ENVSSQVLNFNG-LKIDMGSYTVIYNEKDIKMPPKEFELLYYLANNKNKVFTREQLLCEV 184 Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + G D P + + +DV + +LR+KL G I+TVWG GY Sbjct: 185 W-GYDYPGDSRTVDVHVKRLREKLHEGNGWD--IQTVWGVGY 223 >gi|332974949|gb|EGK11861.1| two component response regulator IrlR [Psychrobacter sp. 1501(2011)] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL+ED+ L I+ L F V G DG ++ II+D+ L DI GF Sbjct: 1 MKILLVEDEVTLGEYIKKGLTEAGFLVDHKLNGLDGYHALMSETYNVIIMDVMLPDISGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ R A TPV L+ +ED+++G++ G DDY++KPF ELV RI+ ++RR+ Sbjct: 61 ELVKNYRAAGHITPVLFLTAKDDLEDRIKGIEIGGDDYLTKPFAFAELVVRIKNLLRRAN 120 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + DL+++L +TV G I LT KE+ +++ + R+ L + + + + Sbjct: 121 QSEYLNTQLKIADLTLDLAKRTVHRGGVSIQLTSKEFALLQFMLEREGEVLPRSVIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +IDV I +LR K+ K I TV G GY L Sbjct: 181 WDMNFDSDTNVIDVAIRRLRVKIDEGFDLK-LIHTVRGMGYKL 222 >gi|296129143|ref|YP_003636393.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020958|gb|ADG74194.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 218 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 8/220 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+++D+ L ++ L +E F V GE G+ + +D +++D+ L G+ Sbjct: 1 MRVLVVDDEVGLVRALRRGLTAEGFAVDAAHDGETGLAMAVDGAYDVLVVDVMLPRRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+ ALR + TPV +LS D GL GADDY++KPF+ LVAR+RA+VRR Sbjct: 61 DVVTALRALDVWTPVLMLSAKDGEHDVADGLDVGADDYLTKPFSFVVLVARLRALVRRPV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ G L+++ + V G + LT +E ++E L + + K L+H++D Sbjct: 121 APRPAVLRAGALTLDPATREVTRDGRPVDLTARETALLEYLLRHADRVVGKIELLDHVFD 180 Query: 181 -GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G ++P V ++V++ LR+KL G++ + TV G GY Sbjct: 181 TGGEDPNV--VEVYVGYLRRKL-----GRDAVLTVRGTGY 213 >gi|261346810|ref|ZP_05974454.1| transcriptional regulatory protein CpxR [Providencia rustigianii DSM 4541] gi|282565210|gb|EFB70745.1| transcriptional regulatory protein CpxR [Providencia rustigianii DSM 4541] Length = 232 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV + GE ++ D ++LD+ + G E Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQID-SSIDLLLLDVMMPKKNGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S DKV GL+ GADDY+ KPFN ELVARIRA++RRS Sbjct: 62 TLKELRQLH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSNW 120 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ + L +N + + LTG E+ ++ LL+ +++E Sbjct: 121 SEQTQGDNSNTPTLQVDKLQLNPGRQEASFDNEILDLTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G+ + +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLM 228 >gi|224543644|ref|ZP_03684183.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM 15897] gi|224523417|gb|EEF92522.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM 15897] Length = 225 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +IEDD+ + I+L L+S + + + + D I D I D+ L ++ G Sbjct: 4 RIYVIEDDENIQEIIKLSLESSGYQITLFNNAIDAIVAIHEDTPDLAIFDVMLPELDGIS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R + P+ ILS DKVRGL SG DDY++KPF EL AR+R+++RRS+ Sbjct: 64 AIKQIRKTNTTLPILILSAKDREIDKVRGLDSGCDDYMTKPFGVLELAARVRSLLRRSQH 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H++ +I T L ++ + QG ++ LT KEYQ++ L K + +E LN+++ Sbjct: 124 HSK-VIKTTSLEIDKSKHIILKQGEKLELTHKEYQLLLYLVENKERVVEREELLNNIWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E + +DV I LR KL + G +YI+T+ GY E+ + Sbjct: 183 DFVGESRALDVHIRSLRAKLGD--DGHHYIKTIRSVGYRFIEDGQ 225 >gi|196048307|ref|ZP_03115484.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus 03BB108] gi|196021044|gb|EDX59774.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus 03BB108] Length = 230 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 128/227 (56%), Gaps = 3/227 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61 IL++ED+ + I L L+ FNV GE+ +E+ + ++ D +LD+ L I GFE Sbjct: 4 ILVLEDELTIRSFIVLNLQRAGFNVLEASTGEEALEIFRTHQAIDIALLDVMLPGIDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R V +L+ ++ ++GL GADDYI KPF+ EL+ARI++++RR Sbjct: 64 VCRKIRDFNDQLGVIMLTACVQNKEIIQGLTMGADDYIEKPFSPTELIARIKSLLRRINL 123 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + LI +G +N +++ +G +I LT EY ++ L + ++++ LN ++ Sbjct: 124 NMKDGDLIHSGPFVLNNLEESLYKKGKKIELTPTEYMILFQLMYNSSKPISRDELLNTIW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E E K++DV I ++R+K+ Y+ T+WG+GY+ + + + Sbjct: 184 GEHYEGETKVVDVNIRRIRQKIELNPSDPQYLLTIWGKGYIWKVSVR 230 >gi|153940791|ref|YP_001390392.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936687|gb|ABS42185.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318479|gb|ADF98856.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 228 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 12/224 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G + IE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 R +R + + +L+ ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR + Sbjct: 64 CRIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 +LI G LS++ D + V+V G + +T E+ ++ L K L++E +N + Sbjct: 123 NSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++G D + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFNGYD----RTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222 >gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905] gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 7/221 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + IE+ML + + + G + ++ + D ++LD+ + GF V Sbjct: 4 VLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDIIVREKIDLVLLDVMMPHEDGFVV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R A + P+ L+ + +DKV+GL G DDYI KPF +ELVARI A++RRS + Sbjct: 64 CQSIR-AMSNVPIIFLTARDANDDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +V G + ++ A+ V V G I LT KE++++ L T+E L + Sbjct: 123 IAELQQKYVVFGPIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +D + +D I LR KL A +I+TVWG GY Sbjct: 183 WDIDYVGGTRTVDTHIKTLRIKLGKEAAA--HIQTVWGVGY 221 >gi|219670685|ref|YP_002461120.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540945|gb|ACL22684.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 5/229 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+I+L +D++++ +E ++ + ++ G + + + + D +ILD+ + + GF Sbjct: 1 MKIMLADDEESIRIVVEYIITEDGYDFCYAADGAEALAVFEAENPDLVILDVMMPKLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V LR + P+ ILS I DK G ++GADDY+ KPF+ EL RI A++RR Sbjct: 61 DVCAQLRKKGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSSLELSLRIEALLRRRD 120 Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A + I GDL + ++G R+ LT KE++++ ++ T++ L Sbjct: 121 HQAGETEERESIKLGDLEIFFKRYEARLKGKRVELTPKEFKILAYMASHPGKVYTRKQLL 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ E+ I VFICK+R+K+ Y++TVWG GY E Sbjct: 181 TYVWGEDYVGELTGIAVFICKIREKIEEDPSKPKYLQTVWGVGYKFGEK 229 >gi|325695127|gb|EGD37029.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 234 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 3/203 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVWA 180 Query: 181 GRDEPEVK--IIDVFICKLRKKL 201 ++ ++ + ++I LR+KL Sbjct: 181 NDEDEDLDEGFVWIYISYLRQKL 203 >gi|311696859|gb|ADP99732.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 224 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 5/227 (2%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +LIEDD LA+++ ML+ E V D G+ + FD ILDL L + G +++ Sbjct: 1 MLIEDDHLLANTMLGMLRDEQNTVDWLDDGQQALNALLNDSFDLAILDLTLPRVDGLDIV 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + +R I TPV IL+ +++K++GL +GADDY++KPF EL ARIRA+ RR G Sbjct: 61 KKVRSQGIETPVIILTARGDLDEKLQGLNAGADDYLTKPFAMAELKARIRAVTRRGAGFR 120 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 + G L ++ D+ +++ L E+Q++ L + T+ LY Sbjct: 121 TGGLQVGRLILDPDSGQLKLGTETAALPRSEFQILHYLMRHPDQVATRRRLEEQLYGWEQ 180 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 E ++V + LR+++ GK I TV G GY+L A E Sbjct: 181 GAESNALEVHVHHLRRRV-----GKQTIRTVRGVGYMLDSKAAAEVS 222 >gi|119490531|ref|ZP_01622973.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119453859|gb|EAW35015.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 225 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 112/219 (51%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD I L V + G+ L ++D +I D L + G Sbjct: 1 MRILLVEDDIEQLEPIRTALSQAGHIVDGVETGDTAQWLMGETDYDLLIFDWMLPAVSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ R R + PV +L+ + DKV GL SGADDY+ KP + EL+ARIRA+ RRS Sbjct: 61 ELCRTYRSMGKTAPVLLLTAKDTTADKVIGLDSGADDYLVKPIDLLELLARIRALGRRSP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +NL V+ + ++ L+ +E Q++E N L+++ L++ Sbjct: 121 HWLGDSLKLGDLELNLARLCVQREEKQVQLSVRESQLLEYFLRHPNQVLSRDQIEQSLWE 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + PE + + +LR++L N+IETV+G GY Sbjct: 181 WDNPPESNAVSTLVRRLRQRLGQVDAA-NWIETVYGLGY 218 >gi|160900531|ref|YP_001566113.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160366115|gb|ABX37728.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 223 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 120/226 (53%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L + L+ V G L + EFDA +LDLGL G Sbjct: 1 MRILVVEDEPTLCGQLVQALQQAGHTVETAADGATAQYLGEVEEFDAAVLDLGLPVRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLRA R PV IL+ + +KV G+ +GADDY++KPF+ EEL+AR+RA++RR Sbjct: 61 TVLRAWRAQGRVMPVMILTARGAWHEKVAGMDAGADDYLAKPFHMEELMARLRALLRRLS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 HA + G + ++ V V G + LT E++++ LL R +++ H+Y Sbjct: 121 PHASAQWQCGPIVLDSRHARVSVAGQPLTLTSHEFKVLALLMQRVGQVISRTELSEHIYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I+VF+ +LRKKL + IETV G GY L E A Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLPAGS-----IETVRGLGYRLVEGAP 221 >gi|92114714|ref|YP_574642.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91797804|gb|ABE59943.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 233 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD+ +A I L+S + V + D ++LD GL D G Sbjct: 1 MHVLLVEDDELVAAGIRAGLESHGWAVDTVASMAAARHALQVVASDIVVLDRGLRDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R A PV +L+ +I D++ GL +GADDY+ KPF+ +ELVAR+ A++RR+ Sbjct: 61 TLVEEWREAGKRVPVLVLTARDAISDRIAGLDAGADDYLVKPFDLDELVARLHALLRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A IV G L + A+ V +G + L+ +E ++E + L+ + LY Sbjct: 121 GRAHPCIVHGALRFDPQARQVTWRGRPVTLSRRELVLLETFLQSPGSVLSANQLRDSLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+K++ A IETV G GY L Sbjct: 181 LDDEVESNALNVHIHHLRRKVAPA-----VIETVRGLGYRL 216 >gi|70730005|ref|YP_259744.1| transcriptional regulatory protein RstA [Pseudomonas fluorescens Pf-5] gi|68344304|gb|AAY91910.1| transcriptional regulatory protein RstA, putative [Pseudomonas fluorescens Pf-5] Length = 236 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 16/233 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPG 59 ++LL+EDD+ LA I L F V G+ L F EF ++LDL L G Sbjct: 8 KVLLVEDDEKLAGLIAHFLSQHGFEVLTVHRGDTA--LAAFLEFKPKLVVLDLMLPGQSG 65 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R +R A TP+ IL+ D + GL+SGADDY+ KP L+AR+RA+ RR Sbjct: 66 LHVCREIR-AVADTPIVILTAKEDDLDHILGLESGADDYVIKPIKPAVLLARLRALQRRQ 124 Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +L + G LS++ +++ V + G + LT E++++ LL+ TL+++ LN Sbjct: 125 VPETTTLRGALAFGVLSIDRNSREVRLAGEPVELTTMEFELLWLLASAPGKTLSRDDILN 184 Query: 177 HL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +DG + + +DV+I KLR KL + I+TVWG+GY+ A Sbjct: 185 RMRGIEFDGLN----RSVDVYISKLRGKLKDNPREPVCIKTVWGKGYLFNPFA 233 >gi|258591886|emb|CBE68189.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 126/230 (54%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+++D+K + + L+ E F V G +EL K ++LDL L + G Sbjct: 1 MKVLVVDDEKDITALVAYHLEREGFRVLQAHDGLQALELVKRERPSLLVLDLMLPHLSGL 60 Query: 61 EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 +V R LR + P+ +L+ + DKV GL+ G DDY++KPF +ELVAR++A++RR Sbjct: 61 DVCRRLRKEPDTARLPILMLTAKAEETDKVLGLELGGDDYLTKPFGPKELVARVKALIRR 120 Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S ++ G L ++LD TV ++ + LT KE+ +++ L L K LT+E L+ Sbjct: 121 SEEVQGGEIVKAGSLEIDLDRYTVAIRKRAVELTPKEFDLLKALVLAKGRVLTREYLLDR 180 Query: 178 L--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + Y+ E E + +DV + +LR+KL A I TV GY +++ Sbjct: 181 VWGYERASEIESRTVDVHVRRLREKLGPEAA---RIVTVKSVGYRFNQDS 227 >gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++L L+ E + + G + +E +D I+LD+ L +I G E Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR +R+ P+ +L+ S+ DKV GL GA DYI+KPF EEL+ARIRA +R S Sbjct: 64 VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + S DL LD KT EV+ I LT +E+ ++ L +N L +E + Sbjct: 124 VKEEQNSSYQIADLY--LDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVT 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + ++DV+I LRKK+ + I TV G GYVL+ Sbjct: 182 NVWGFDYYGDTNVVDVYIRYLRKKV-DCNVDVPLIHTVRGVGYVLK 226 >gi|116662230|ref|YP_829285.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116612982|gb|ABK05704.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K LA ++ L +E F V VT G G+ +D I+LDL L G+ Sbjct: 1 MRVLLVEDEKMLAETVRRGLVNEGFVVDVTHDGVSGLWAATENPYDVILLDLMLPLKNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR + TPV +L+ D+ GADDY++KPF+ LVARIRA++RR Sbjct: 61 DVLKELRERLVWTPVLMLTAKDGEYDQTDAFDLGADDYLTKPFSFIVLVARIRALIRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+++ +++V I LT +EY ++ L ++K L++++D Sbjct: 121 PERPVTLTVGSLTLDPGSRSVRRGDTVIELTAREYGLLHYLMRSHGQVVSKAQILDNVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E +++V+I LR+K+ + G + TV G GY+L Sbjct: 181 PAFEGGDNVVEVYIGYLRRKI-DVPFGLQTLATVRGMGYML 220 >gi|242372530|ref|ZP_04818104.1| KDP operon transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349747|gb|EES41348.1| KDP operon transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 232 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 120/216 (55%), Gaps = 10/216 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+A+ H I++ L + V G + + D I+LDLGL DI G + Sbjct: 5 LLVVEDDEAILHLIDVALTMNYYKVIKAKNGREAEFRIRTEHPDIILLDLGLPDIDGLSL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 ++ LR + TP+ ++S + E V+ L GA+DY++KPFN +EL ARIR +R SR Sbjct: 65 IQQLREC-VDTPIIVISARTEEETIVKALDCGANDYMTKPFNIDELQARIRVALRVSRKI 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ G L+++ + K+V + G IHLT E+Q++E+LS LT ++ L L+ Sbjct: 124 DTEQNNFENGPLTIDFNGKSVYIMGQSIHLTPNEFQLLEILSRHVGKVLTYQILLKSLFG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216 ++ E+ + V + LRKKL NY E + G Sbjct: 184 YVNKCEMASLRVHMASLRKKL-------NYSENIDG 212 >gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/218 (33%), Positives = 118/218 (54%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD L I + L+ E ++V T G + I++ + D +ILD+ L D+ G V Sbjct: 7 ILVVEDDSGLQELIRVRLEQEGYHVIQTISGLEAIKIIRQQRPDLVILDIMLPDLDGLTV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R S P+ +L+ + ED + GL GADDY+ KPFN +EL+ARIRA++RR Sbjct: 67 CQKVR-EFASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRRVPAT 125 Query: 123 AQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L V +L S++ + V V+G + LT EYQ++ +L+ +T E L ++ Sbjct: 126 NRPLTVGNNLISIDQRKREVRVRGELVDLTPTEYQLLLVLAEHAGEVVTHEQLLRAVWGS 185 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + V+I LR+K+ + T WG GY Sbjct: 186 EPMRDNDYLKVYIWHLRRKIEIDPRQPQLLLTEWGVGY 223 >gi|320546797|ref|ZP_08041105.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320448543|gb|EFW89278.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 224 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++SI L + V D G +G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GAEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR +STPV I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QILKELREKCVSTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + +L+ + T V G ++ L GKE+ ++ +N L K + ++ Sbjct: 121 KFNNNTLSYHELTADTSTNTTTVNGEKVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +++V++ K+RKKL + + ++T+ GY+L++ Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTSFADS-LQTLRSVGYILKD 222 >gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 269 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE+ + L + D ++LD+ L + GF V Sbjct: 26 LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALTLFHQEQPDLVVLDVMLPKLDGFAV 85 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR RG Sbjct: 86 CRRLR-AESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A Q ++ GDL V+ + + V G RI LT E+ ++ELL + + Sbjct: 145 SAAAEPREATPGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPR 204 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254 >gi|299065501|emb|CBJ36670.1| putative response regulator, CheY family [Ralstonia solanacearum CMR15] Length = 235 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL+ED++ LA + L F V + DG+ F EFDA++LDL L Sbjct: 1 MRILLVEDEEELAAWLARALAQSGF---VVERAADGLAAEAFLASGEFDAVVLDLRLPRK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VL +R TPV IL+ +++++VRGL +GADD+++KPF EL AR+ A++R Sbjct: 58 DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG A + G L + K + G + LT +E+ + L + ++K + Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ + ++V + +LRKKL AG I TV G GY+L A Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGSGVQIVTVRGLGYLLEAEA 222 >gi|291523001|emb|CBK81294.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 233 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD + + I LK+ + G + + D ++LDLGL D+ G E+ Sbjct: 6 VLVVEDDTPVRNLITTTLKTHEYRYLSAQNGASAVLEALSHNPDIVLLDLGLPDMDGVEI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R +R + + P+ ++S + DK+ L +GADDY++KPF+ +EL+AR+R RR Sbjct: 66 IRKIR-SWSNMPIIVISARTEDSDKIGALDAGADDYLTKPFSVDELLARLRVTQRRLALM 124 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G L ++ A + G +HLT EY+++ LLS LT Sbjct: 125 KADTAQETPIFTNGALKIDYAAGCAYIDGAELHLTPIEYKLLCLLSKNVGKVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E ++ + VF+ LRKKL N G+ YI+T G GY Sbjct: 185 QIWGSSWENDIASLRVFMATLRKKLENGKDGQQYIQTHIGIGY 227 >gi|257438091|ref|ZP_05613846.1| KDP operon transcriptional regulatory protein KdpE [Faecalibacterium prausnitzii A2-165] gi|257199422|gb|EEU97706.1| KDP operon transcriptional regulatory protein KdpE [Faecalibacterium prausnitzii A2-165] Length = 243 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 118/236 (50%), Gaps = 6/236 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L++ED+ + IE +L++ + V + G L + D IILDLGL D G Sbjct: 8 FKVLVVEDEANICSFIETLLETNGYQALVANTCAMGQTLFTSHNPDLIILDLGLPDRDGL 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++R +R K TP+ +LS ++ +DK+ L GA+DYI+KPF EL+AR+RA +R +R Sbjct: 68 ELIRFVR-QKFLTPIVVLSARTTEQDKIEALDLGANDYITKPFGTGELLARVRAALRTNR 126 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G L L +N + + V V G I LT EY ++ LS +T + Sbjct: 127 FGVLGGMPGGLFRAQGLEINYERRKVFVDGAEIKLTQTEYNIVAFLSEHAGRVMTYAAIV 186 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 ++ D K + V + +RKKL + G YI G GY + + D E Sbjct: 187 RAIWGDTDCGSTKKLQVNMANIRKKLGSVPGRNTYILNELGVGYRMIDEDTDARPE 242 >gi|219854871|ref|YP_002471993.1| hypothetical protein CKR_1528 [Clostridium kluyveri NBRC 12016] gi|219568595|dbj|BAH06579.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 236 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDDKALA IE L E ++V + +E FD ++LD+ L D G++ Sbjct: 8 KILLLEDDKALALGIEFTLMDEGYDVVKCSYAREAVEAFNSEVFDILVLDIMLPDGNGYD 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K PV L+ + V GL GADDYI+KPF +E V+RI+AI+RR+ Sbjct: 68 VCKYVR-KKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 126 Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + L+A+T+E +GH + L+ +EY+++ L +++E L++L Sbjct: 127 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 186 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG E + + V+I ++R+K+ + YI+T G GY Sbjct: 187 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGY 227 >gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis] Length = 239 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 11/237 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ ++ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEESVT-LLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RRS Sbjct: 63 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEM 122 Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A S IV GDL + D + ++ LT KE++++ L K LT+ Sbjct: 123 AAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 182 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ N YI+T+ G GY L E +E Sbjct: 183 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 239 >gi|149203784|ref|ZP_01880753.1| two-component response regulator [Roseovarius sp. TM1035] gi|149142901|gb|EDM30943.1| two-component response regulator [Roseovarius sp. TM1035] Length = 223 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++EDD I L+ E +V + G D + +D +I+D L +I G Sbjct: 1 MKLLVVEDDATTGAYIARGLREEGQSVDLVSNGRDALIQATSGPYDVLIIDRMLPEIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A TPV L+ + S++++V GL +GADDY+ KPF EL AR+ A+ RR Sbjct: 61 TLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRPH 120 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q ++ G L ++L A+ V +G I L +E+ ++E L RK T+ M L ++ Sbjct: 121 ALEQETVLRAGPLEMDLIARKVTREGQEIDLLPREFAILEHLMRRKGRVQTRTMLLEAIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P +++ I +LR K+ I+TV G GY Sbjct: 181 DISFDPMTNVVETHISRLRAKVDKPF-TTELIKTVRGAGY 219 >gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 226 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++L+ + +L+ E F V + D G + + + D ++LDL L PG E Sbjct: 3 RILIVEDEESLSDPLSYLLEREGFEVRIADDGLKAVTEFERHGADLVLLDLMLPGQPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R+ PV +L+ S DKV GL+ GADDY++KP++ EL+ARIRA++RR +G Sbjct: 63 VIRQIRLNS-QVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRR-QG 120 Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + LI G + ++++ V V+ + + KE++++E+L LT+ ++ Sbjct: 121 EGEELISNVVTAGPVRMDVERHVVSVENTEVSMPLKEFELLEMLLRNAGRVLTRGQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ + TV G GY Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRSKIEADPAVPERLVTVRGLGY 222 >gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 234 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK +NF VY + G + + + + DA ILD+ + + GFE Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRIAREVNPDAYILDVMMPGMDGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + PV L+ ++ ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S + DL++N D V G I L+ E+ ++ L K L+K L++ Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKID--TGETQLIHTVRGVGYVLR 230 >gi|222094028|ref|YP_002528080.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229194647|ref|ZP_04321443.1| Two-component response regulator [Bacillus cereus m1293] gi|221238078|gb|ACM10788.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228588840|gb|EEK46862.1| Two-component response regulator [Bacillus cereus m1293] Length = 233 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227 >gi|149908632|ref|ZP_01897294.1| transcriptional regulator CpxR [Moritella sp. PE36] gi|149808466|gb|EDM68403.1| transcriptional regulator CpxR [Moritella sp. PE36] Length = 288 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLI+DD+ LA + L E+F+V + GE G+ + ++D ++LD+ + + GFE Sbjct: 64 KLLLIDDDRELAELLAEFLSLEDFDVDMVHDGEAGLAAIRGNQYDMVLLDVMMPKLNGFE 123 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL+ LRV + PV +L+ D+V GL+ GADDY+ KPF++ EL+ARIRA++RR Sbjct: 124 VLKKLRVDN-NIPVLMLTAKGDEIDRVLGLEMGADDYLPKPFSERELLARIRAVLRRIEP 182 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L+ D+ +N + Q + LT E ++E L T LTK + Sbjct: 183 PTTKKTELLTHLDIEINSRTQEAWCQTILLDLTSTELMLLEALISSPGTILTKADLSEQV 242 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + P + ID+ + LRKKL K I T+ GRGY+ Sbjct: 243 LGKKLTPFDRSIDMHLSNLRKKLPERKDEKMRIRTLRGRGYM 284 >gi|313906136|ref|ZP_07839485.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469023|gb|EFR64376.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 229 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++++A + L+ F V + GE G + +FD ILDL L I GF Sbjct: 3 RILIIEDEESIAELEKDYLELSGFEVAIETDGESGRDRALEEDFDMFILDLMLPGIDGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K +TP+ I+S DK+ GL GADDY++KPF+ ELVAR++A + R Sbjct: 63 ICKQIREKK-NTPIIIVSAKKDDIDKIHGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 119 --SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S G ++ +I + ++ A+ V V + T KE+ ++ L+ N TKE Sbjct: 122 LVSSGQPKNDVIEIRGIRIDKTARRVWVNKEEKNFTNKEFDLLTFLAENPNHVFTKEELF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ ++ + V I K+R+K+ YIET+WG GY + Sbjct: 182 QKIWNMDSVGDIATVTVHIKKIREKIEYNTAKPQYIETIWGVGYRFK 228 >gi|242239495|ref|YP_002987676.1| DNA-binding transcriptional regulator PhoP [Dickeya dadantii Ech703] gi|242131552|gb|ACS85854.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 223 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L H + + + V ++ + D I+DLGL G Sbjct: 1 MRILVVEDNVLLRHHLTVQMNELGHQVDAAADAKEADYFLHEHAPDIAIVDLGLPVEDGT 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R R + P+ +L+ S ++KV L++GADDY++KPF+ EE++ARI+A++RR+ Sbjct: 61 SLIRRWRARQEKLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVMARIQALMRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I V+L + + V G + LT EY +IE L ++KE + LY Sbjct: 121 GLASQVISLPPFEVDLSRRELMVHGAPVKLTAFEYTIIETLIRNIGKVVSKESLMLQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E IDV + +LRKKL AA I TV G+GY Sbjct: 181 DAELRESHTIDVLMGRLRKKL-QAANTNEVITTVRGQGY 218 >gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1] gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1] Length = 239 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+G +L D +ILDL L I G E Sbjct: 4 KILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEEVPDLMILDLMLPKIDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R K+ P+ +L+ DKV GL+ GADDY++KPF+ E++AR++AI+RRS Sbjct: 64 VCKQIRQQKVMIPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAILRRSQA 123 Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R + + GDL V + + + LT KE++++ L+ + LT+ Sbjct: 124 VIDVAEHLRSEQKDYLQVGDLKVFPEQYEAYFAENLLELTPKEFELLMYLTENRGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + L+ +++ + +I+DV I LR+K+ YI+T+ G GY L E Sbjct: 184 DQLLSAVWNYDFAGDTRIVDVHISHLREKIETNTKKPAYIKTIRGLGYKLEEQ 236 >gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 227 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ +A +EL L E ++V G +G++ + FD IILD+ L I G E Sbjct: 5 KILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEPFDLIILDIMLPHINGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R + P+ +L+ + DKV GL GA+DY++KPF EEL+ARIRA ++ R Sbjct: 65 VLRKIRQTS-TIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALKAGRQ 123 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + G+L ++ D V I LT KE+ ++ KN LT++ L ++ Sbjct: 124 LVSKENTLQLGNLKLDTDMYKVTYGTEIIELTKKEFDLLHYFLENKNIVLTRDKILQAVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I+DV+I LR K+ + K I TV G GY+L+ Sbjct: 184 GYDYIGDTNIVDVYIRYLRSKIDDKYNIK-LIHTVRGVGYILK 225 >gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 239 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ + F V G ++ + + A+I+D+ + I GF Sbjct: 13 RVLVVDDEPMIVELLSVSLRFQGFEVETAVDGAQALDKARSFRPQAMIVDVMMPGIDGFG 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR I PV L+ ++DKV GL GADDYI+KPF+ EE+VAR+R ++RR+ G Sbjct: 73 LLPRLRADGIDAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRRA-G 131 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H S I D+ ++ D V G + L+ E+ ++ + T L+K L+ Sbjct: 132 HGAPVRESSRIRFEDIELDDDTHEVWKAGVPVSLSPTEFTLLRYFMVNAGTVLSKPRILD 191 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 H++ EV +++ ++ LRKK+ G + I T+ G GYV+R + Sbjct: 192 HVWRYDFGGEVGVVETYVSYLRKKVDT--GERRLIHTLRGVGYVMRAPGR 239 >gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 229 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 133/223 (59%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D++ + I + L +E + V GE+ + + +D IILD+ + + G Sbjct: 4 LRVLVVDDEEKIRQVIGIYLTNEGYRVEEAVDGEEALRKFRAESWDLIILDVMMPKMDGI 63 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R V+K+ P+ +L+ + D++ GL+ GADDY+ KPF+ ELVARI+A++RR+ Sbjct: 64 AVCQEIRRVSKV--PIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRRA 121 Query: 120 RGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ ++ + ++L ++ ++V+ + LT KE++++ LL+ + ++E L Sbjct: 122 GTESKKEEHILKFPGMRIDLISREIQVKEKPVTLTPKEFELLALLAKTAGRSYSREQLLE 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +V+ +D + +LR KL AAG N+I+TVWG GY Sbjct: 182 EVWGFDYYGDVRTVDTHVNRLRDKL-RAAGAPNFIKTVWGVGY 223 >gi|223983544|ref|ZP_03633727.1| hypothetical protein HOLDEFILI_01008 [Holdemania filiformis DSM 12042] gi|223964472|gb|EEF68801.1| hypothetical protein HOLDEFILI_01008 [Holdemania filiformis DSM 12042] Length = 237 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 130/229 (56%), Gaps = 1/229 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++ LA ++ L+ + V G DG+ L ++ ++LDL L + G Sbjct: 10 MKLLIVEDEEDLAMGLKRGLRKNGYEVEWIGEGRDGLALALAEDYGCVLLDLNLPGLDGL 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR K V ILS S+ DKV+GL GADDY+ KPF+ EEL+ARIR + R Sbjct: 70 DLLRRLRAEKPQQKVLILSARGSVGDKVKGLDLGADDYLVKPFHFEELLARIRNLTGRRF 129 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L ++ + V V+ R+ LT KE Q++E L+L + L+ E ++ ++ Sbjct: 130 IRQDVVVCRGSLRIDTGSHQVYVRDQRLKLTAKETQILETLALHEGKRLSAETIISQVWG 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ V + LR+KL+ AA G+++IE G GY L+EN ++ Sbjct: 190 EDEDLFSNAFKVHLSSLRRKLA-AASGEDWIECQRGLGYCLKENPNEKA 237 >gi|116669221|ref|YP_830154.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609330|gb|ABK02054.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 246 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L+++D+ +L+ + + L+ ++V V G D ++L K + D ++LD+ L G Sbjct: 22 IRALVVDDEPSLSELMSMGLRMAGWSVAVAGDGPDAVKLAKEFRPDVLVLDVMLPGFDGV 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R P L+ +++D++ GL +G DDY++KPF+ EE++ R+ +V+RS Sbjct: 82 ELLTRIRAFAPEVPALFLTAKDAVQDRILGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A +V GDL +N+D + V G + LT +++++ L ++K L+ + Sbjct: 142 VAAMDTAELVVGDLVLNIDTREVTRAGEELQLTATQFELLRYLMENPRRVVSKAQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + I++++I LRKK+ A I TV G GYV++ Sbjct: 202 WDYDFGGQANIVELYISYLRKKVD--AVHPPMIHTVRGAGYVIKP 244 >gi|229119055|ref|ZP_04248396.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228664407|gb|EEL19907.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] Length = 229 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 125/228 (54%), Gaps = 4/228 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + I L +K FNV TD GE ++L + + D IILD+ L I GF+V Sbjct: 4 ILVLDDEITIRSFITLKMKHAGFNVLETDTGEKALDLLENHNVDIIILDVMLPGIDGFQV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + +L+ +D+V GL GADDYI KPF+ ELVAR+++++RR + Sbjct: 64 CKQIRKNNEKIGIIMLTSRVQGKDQVHGLTIGADDYIKKPFSINELVARVQSLLRRVKET 123 Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I + +N+ + + G +I LT EY ++ L + ++ LN ++ Sbjct: 124 KKDMASIHSEPFKLNILQEKLYKDGIKIDLTPTEYIILRYLMENSIKPIPRDELLNKIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + K++DV I +LR+K+ + ++ TVWG+GY R N + + Sbjct: 184 INCLSDTKVVDVNISRLRQKIEPSPSNPQFLLTVWGKGY--RWNGRKQ 229 >gi|229132743|ref|ZP_04261589.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196] gi|228650753|gb|EEL06742.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196] Length = 242 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I + L+ E F V+ D GE+ +E+ + ILD+ + + G E+ Sbjct: 16 ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKYSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G I+LT EY ++ L++ N T E Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238 >gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 229 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ L ++ L+ + + + GE+ +E K D I+LDL L I G + Sbjct: 4 KILIVDDEPLLVKGLKYSLEQDGYEILTAFDGEEALEKAKIANADLILLDLMLPKIDGLQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R+ TP+ +L+ K+ GL+ GADDY++KPFN EL ARI+A++RR + Sbjct: 64 VCQQIRLNS-QTPIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRRYQS 122 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + I D +N + V ++G ++LT KE+ ++ LL+ ++E L Sbjct: 123 SDKPIEERVIKIDDFKINTLGRKVSLKGEEVNLTAKEFDLLLLLASNPGKIYSREELLEI 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +DV I +LR+K+ + YI T WG GY R Sbjct: 183 IWGYEYFGDLRTVDVHIRRLREKIEINSSNPEYILTKWGVGYYFR 227 >gi|163942563|ref|YP_001647447.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864760|gb|ABY45819.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 233 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 125/224 (55%), Gaps = 9/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+E+ K + I+LD+ + I G + Sbjct: 6 ILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++V +I+ P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++ GD+ +N+ + V + + LT +E++++ELL+ + L E Sbjct: 124 MSGASVKDENVFEVGDIKINIATRQVIIANKEVKLTPREFEVLELLARNQGMVLNAEQIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I K+R+K+ YI+TVWG GY Sbjct: 184 ERVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGY 227 >gi|261211256|ref|ZP_05925545.1| transcriptional regulator CpxR [Vibrio sp. RC341] gi|260839757|gb|EEX66368.1| transcriptional regulator CpxR [Vibrio sp. RC341] Length = 228 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD L + +L+ E F++ + GE G+ E D I+LD+ + + G E Sbjct: 4 ILLIDDDTELTSLLTEVLQYEGFDISEANDGEAGLAAVS-DEVDLILLDVMMPKLNGMET 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 L+ LR K +TPV +L+ D+V GL+ GADDY+ KPF+ EL+ARIRAI+RR++ Sbjct: 63 LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNA 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I DL V + QG + LT E+ ++ TLTKEM + Sbjct: 122 LPPKNSDVIECQDLQVYPGKQEAYCQGQLLDLTTTEFALLTHFVQSPGETLTKEMLSVEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R + ID+ + LRKKL GK I+T+ GRGY++ Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERQDGKARIKTLRGRGYLM 224 >gi|238854218|ref|ZP_04644563.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri 202-4] gi|238833154|gb|EEQ25446.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri 202-4] Length = 221 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 118/201 (58%), Gaps = 1/201 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ + ++S N++V G D +EL K +D IILD+ + + G Sbjct: 1 MKILLAEDEEQLSRVLVAAMQSVNYDVDAVFNGRDAVELAKKNSYDVIILDIMMPIMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ +R + T V +L+ + I+D+V GL SGADDY++KPF+ +EL+AR+R+ RR Sbjct: 61 TALKQIRKSGDKTYVLMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLRSKERRDD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + GDL++N+ + + V + I L KE Q++ L L + + L H++ Sbjct: 121 QYTPNEVEVGDLALNVSEQEL-VSHNSIRLGSKETQLLNYLMLNEGKEFSTSDLLAHVWK 179 Query: 181 GRDEPEVKIIDVFICKLRKKL 201 D+ +++ ++I LR+KL Sbjct: 180 DEDDANEEVVWIYISYLRQKL 200 >gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 231 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 8/222 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++ + + L L+ E F V + GE+ ++ K IILDL L + G++V Sbjct: 6 ILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKAKSTTPQLIILDLMLPKLDGWDV 65 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R +R K S P+ +L+ DKV GL+ GADDY++KPF+ ELVAR++AI+RR+ Sbjct: 66 CREVR--KFSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRRATP 123 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q+ ++ L++N ++ V V + LT KE+ ++ L+ T+E L Sbjct: 124 EEQTDTEDVLTFPGLAINHSSREVHVDDREVTLTPKEFDLLWFLATHPGKVFTREQLLTA 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +++ +D I +LR+K+ G +++T+WG GY Sbjct: 184 VWGYDYYGDLRTVDTHIKRLREKVER-DGNTPHVKTIWGVGY 224 >gi|82545283|ref|YP_409230.1| DNA-binding transcriptional regulator QseB [Shigella boydii Sb227] gi|81246694|gb|ABB67402.1| QseB [Shigella boydii Sb227] gi|332092043|gb|EGI97121.1| transcriptional regulatory protein qseB [Shigella boydii 3594-74] Length = 219 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|320450615|ref|YP_004202711.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01] gi|320150784|gb|ADW22162.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01] Length = 220 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 10/215 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDI-- 57 MRIL++ED+ +A + L+L E + + DL E E ++LD+ L + Sbjct: 1 MRILVVEDEPDIAEPVTLLLSREGYEAAWAPDLDSAWEEFLA-AEPALLVLDVMLPEGED 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF R +R S + L+ S+ED+V GL G DDY+ KPF EEL+AR+RA++R Sbjct: 60 AGFTFARQVREGGYSGSILFLTARDSLEDRVAGLNLGGDDYLVKPFALEELLARVRALLR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R H GDL+V+L A+ +G I LT KE+ ++E L L + T E + Sbjct: 120 RGAQHKGGRFQRGDLAVDLVARKAYWKGEEIGLTLKEFALLETLCLNPDRLFTPEELADR 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLS-----NAAGG 207 L+ GRD V+++ ++I +LR+KL+ AGG Sbjct: 180 LFPGRDT-AVRMVRIYIHRLRQKLAPEVVRTGAGG 213 >gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101] Length = 254 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 130/238 (54%), Gaps = 13/238 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+ +D+ + +E L + V + G + +EL + E D ++LD+ + ++ GF Sbjct: 13 LKILVADDEANIRRILETRLTMQGHEVLMASNGAEALELFRGSEPDLVVLDVMMPELDGF 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ +R A+ P+ +L+ + + D++ GLQ GADDY+ KPF+ +EL ARIR ++RR+ Sbjct: 73 AVVERIR-AQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRAN 131 Query: 121 GH----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 A +++V GDLSV+ + + RI LTG E+ ++ELL R ++ Sbjct: 132 TSQAGGGSGGGAAANVVVVGDLSVDFNRRQAFRAEERIRLTGMEFNLLELLISRSGEPIS 191 Query: 171 KEMFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + L ++ + E + +++DV I +LR KL + I T G GY+ + A+ Sbjct: 192 RLDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEHDPENPELILTARGMGYMFQRIAQ 249 >gi|317501873|ref|ZP_07960058.1| winged helix family Two component transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316896763|gb|EFV18849.1| winged helix family Two component transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 235 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 15/232 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K + + +LK ++ V D G+ G+E+ + D I+LDLGL DI G + Sbjct: 6 VLIIEDEKNIQTFMGKVLKRHDYQVLYADTGKQGLEMIRSRCPDLILLDLGLPDIDGCSI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R STP+ ++S ++ +KV L GADDYI+KPF EL+ARIRA +R H Sbjct: 66 IRDVRTWA-STPIIVISARTAEREKVAALDLGADDYITKPFGTSELLARIRASLR----H 120 Query: 123 AQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + L+ DL ++ + + ++G+ +HLT EY+++ L+ +T Sbjct: 121 SNRLLTDSTFYIRPYRHKDLILDFSKRLLTIRGNAVHLTPIEYKIVAYLAQNSGKVITYA 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L++++ + + KI+ V + +R+K+ YI T G GY + E+ Sbjct: 181 SILSNVWGPYADNDNKILRVNMANIRRKIEEDPAQPQYIFTEVGVGYRMAED 232 >gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 229 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK +A +E+ +++E + G++ + L + +ILD+ + + G Sbjct: 1 MKILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGQEALTRLRTESDIGLMILDIMMPGMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ ILS + DK++GL SGADDY++KPFN E++AR+++++RR+ Sbjct: 61 IEVVKEVR-KDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H + ++ G L++N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 120 EEHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224 >gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453] gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453] Length = 231 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+ +A IEL LK E ++V G++ ++ + + D ILD+ + + G+EV Sbjct: 6 ILIADDEAEIADLIELHLKKEGYDVLKAADGQEAVQAAQTHSVDLAILDIMMPKLDGYEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R + P+ LS +S DK+ GL GADDY++KPFN EL+AR+ A +RR Sbjct: 66 IRQIR-EQHHMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNAHLRRYMQM 124 Query: 123 AQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q + G + + D + V + G I LT KE+ ++ LL+ + E Sbjct: 125 SQPTTSGKPALEAGGVIIYPDQRIVTLYGETIELTPKEFDILHLLASYPKKVFSTENIFQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ + V I LRKKL I+TVWG GY Sbjct: 185 HVWGEAYFETSNTVMVHIRTLRKKLHEDTNKNKLIKTVWGVGYTF 229 >gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + +++ L + + V+ GE+ +E + D I+LDLGL I G E Sbjct: 7 RILVVDDEIEIVRALQRSLTAYGYEVFSASSGEEALEEVVRHRPDLILLDLGLPGISGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + + P+ +LS + DKV+ L GADDY+SKPF E++AR+R +R S Sbjct: 67 VCRKVR-EQSNLPIIVLSVKDTERDKVQALDLGADDYVSKPFGLNEVLARVRVALRHSAQ 125 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + G L V+ + V+V+G + LT EY +++ L +T++M L+ + Sbjct: 126 VKVGTEPVFQAGPLRVDFSQRLVQVEGKEVKLTPTEYDLLKALIRNSGKIMTRQMLLSQV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + V+I +LR+K+ +I T+ G GY Sbjct: 186 WGTGYGTEAHYLHVYIGQLRRKIEPDPAHPRFILTISGVGY 226 >gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] Length = 228 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K + ++L L+ E ++V GE+G+E K +D I+LDL + + G EV Sbjct: 4 ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +L+ I +KV L GADDY++KPF EEL ARIR +R Sbjct: 64 CKIIRKTS-NIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSNF 122 Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + + D L +NL + I LT EY + L L K +++E LN ++ Sbjct: 123 SNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E KI+DV+I LRKK+ +I TV G GYVL++ + Sbjct: 183 DYMGEEKIVDVYINALRKKIDYDEN--KFIHTVRGFGYVLKKES 224 >gi|28870763|ref|NP_793382.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|71737671|ref|YP_275453.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|213968943|ref|ZP_03397083.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|289625628|ref|ZP_06458582.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646477|ref|ZP_06477820.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298487733|ref|ZP_07005774.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|301382821|ref|ZP_07231239.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato Max13] gi|302062977|ref|ZP_07254518.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato K40] gi|302134596|ref|ZP_07260586.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302187955|ref|ZP_07264628.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. syringae 642] gi|28854011|gb|AAO57077.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|71558224|gb|AAZ37435.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|213926242|gb|EEB59797.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|298157825|gb|EFH98904.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323963|gb|EFW80047.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328099|gb|EFW84104.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330869074|gb|EGH03783.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330875974|gb|EGH10123.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330876559|gb|EGH10708.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330953840|gb|EGH54100.1| DNA-binding heavy metal response regulator [Pseudomonas syringae Cit 7] gi|330986579|gb|EGH84682.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331015882|gb|EGH95938.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 229 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD ++ L + V T G DG+ L +D I+LD+ L I G+ Sbjct: 1 MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A+ PV L+ ++D++RGL+ GADDY+ KPF+ EL+ RIR I+RR Sbjct: 61 QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++L + V Q I LT KE+ ++ LL R+ L++ + ++D Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++DV I +LR K+ K I TV G GYV Sbjct: 180 MNFDSDTNVVDVAIKRLRSKVDLPYPVK-LIHTVRGIGYV 218 >gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314] gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 240 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 126/227 (55%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ + + + LK + FNV G +G+++ + + DA ILD+ + + GF Sbjct: 13 VKVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGF 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + PV L+ ++E+++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 73 ELLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRG- 131 Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G +S + DL++N + V G + L+ E+ ++ L L L+K L Sbjct: 132 GSVESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKIL 191 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ + +++ +I LR+K+ I+TV G GYVLR Sbjct: 192 DNVWHYDFGGDGNVVESYISYLRRKVDTHE--PQLIQTVRGVGYVLR 236 >gi|289678852|ref|ZP_06499742.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. syringae FF5] Length = 236 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD ++ L + V T G DG+ L +D I+LD+ L I G+ Sbjct: 12 MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 71 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A+ PV L+ ++D++RGL+ GADDY+ KPF+ EL+ RIR I+RR Sbjct: 72 QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 130 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++L + V Q I LT KE+ ++ LL R+ L++ + ++D Sbjct: 131 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++DV I +LR K+ K I TV G GYV Sbjct: 191 MNFDSDTNVVDVAIKRLRSKVDLPYPVK-LIHTVRGIGYV 229 >gi|302537327|ref|ZP_07289669.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302446222|gb|EFL18038.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 234 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 17/233 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 MR+LL+EDD +A ++ +L F V GE+ ++ F ++LDLGL D Sbjct: 1 MRLLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPAGAKPFGVVLLDLGLPDQ 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EV +R + STPV +++ + ++ GL GADDY+ KP++ EL+ARI A+ R Sbjct: 61 DGYEVCGKIR-KRTSTPVIMVTARGDVRSRIHGLNMGADDYVVKPYDTGELLARIHAVAR 119 Query: 118 RSRG---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 R+ A + G ++V L + V V G + LT KE+ ++ LL+ R Sbjct: 120 RTGATDEGAATPETAPGTVRLGPVAVELPTRRVTVNGTDVPLTRKEFDLLALLAQRPGVV 179 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++ ++ E + ++V + LR KL A IETV G GY L Sbjct: 180 FRREQIISEVWRTSWEGTGRTLEVHVASLRSKLGMPA----LIETVRGVGYRL 228 >gi|255654521|ref|ZP_05399930.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-23m63] gi|296449247|ref|ZP_06891033.1| response regulator [Clostridium difficile NAP08] gi|296880778|ref|ZP_06904727.1| response regulator [Clostridium difficile NAP07] gi|296261916|gb|EFH08725.1| response regulator [Clostridium difficile NAP08] gi|296428225|gb|EFH14123.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+ L +E LK++ V + G+ GIEL K E D IILD+ + + GFE Sbjct: 3 KILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIELSK-NEPDLIILDIMMPKMDGFE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V +A+R + P+ LS S DK++GL G DDY++KPF EL+ARI A +RR + Sbjct: 62 VCQAIR-DDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +S + L + + + +++ G I LT EY ++ELL+L ++E Sbjct: 121 SQYINEENKRSTLYFEKLCLYMKERAIKIDGKDIDLTKIEYDIVELLALHAGQVFSREQI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + + + K+R K S K YI TVWG GY Sbjct: 181 YEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGY 225 >gi|162147357|ref|YP_001601818.1| transcriptional regulatory protein kdpE [Gluconacetobacter diazotrophicus PAl 5] gi|161785934|emb|CAP55510.1| putative transcriptional regulatory protein kdpE [Gluconacetobacter diazotrophicus PAl 5] Length = 228 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ A+ + L ++++ V G + K E D ++LDLGL D+ G E Sbjct: 5 RVLVVDDEPAIRRLLRTSLATQDWRVIEAGNGISALAAVKAEEIDVVLLDLGLPDMDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V+R +R+ + P+ +LS KV L GADDY++KPF ELVAR+RA +R + Sbjct: 65 VIRQIRLVLPTLPIVVLSVRDDERGKVAALDLGADDYVTKPFGMAELVARLRAALRHALQ 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + L V+GDLSV+L + V G +HL+ +E+ ++ LL LT + L L+ Sbjct: 125 KEGTIPLYVSGDLSVDLVRRIVTRSGEEVHLSPREWDILRLLIRHAGRVLTHKHILGQLW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +V+ + V+I +LR+KL +I T G GY L Sbjct: 185 GANG--DVQQLRVYIRQLRQKLEINPERPRHIITETGIGYRL 224 >gi|289674703|ref|ZP_06495593.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] gi|330898490|gb|EGH29909.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937668|gb|EGH41572.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330950073|gb|EGH50333.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] gi|330981459|gb|EGH79562.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 223 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G E+ ILD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALNSEEYAVAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+ +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGVLAYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I++++ +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVAIVTFRGLGYLL 218 >gi|111027030|ref|YP_709008.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110825569|gb|ABH00850.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 252 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 13/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D++ LA + L+ E+F V V G D + L + + D ++LDLGL + G E Sbjct: 18 RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALALAREIDPDVVVLDLGLPGMDGIE 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R LR + V +L+ S+ D + GL GADDY++KPF+ ELVARIRA++RR Sbjct: 78 VCRQLRTFSDAY-VVMLTARSAEVDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRK 136 Query: 120 ----------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RG ++ V G LS+++ + V + + LT E+ ++ +LS R Sbjct: 137 APVYETPSPDRGGEEAPRVFGALSIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAF 196 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + ++ ++DV + LR+KL + Y+ TV G GY Sbjct: 197 SRRQLIEAVWGESWVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGY 246 >gi|54302523|ref|YP_132516.1| putative DNA-binding response regulator [Photobacterium profundum SS9] gi|46915945|emb|CAG22716.1| putative DNA-binding response regulator [Photobacterium profundum SS9] Length = 199 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 114/197 (57%), Gaps = 6/197 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57 M+IL++ED+ L I L+S N ++ +L DGI+ +D I+LDLGL + Sbjct: 1 MKILVVEDEITLGEQIIDGLES---NGWIAELSSDGIDALYRATSEPWDVIVLDLGLPKL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL+++R ++TPV ILS + + +V GL +GADDY++KPF EL+AR+RA +R Sbjct: 58 DGLTVLKSIRDENVNTPVVILSARNELTQRVEGLNAGADDYLTKPFQMVELIARLRAQLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G+A +I +LS++ V QG + LT +++++ L + +++ + H Sbjct: 118 RSTGNASPVIQVQELSLDTRTSNVLWQGQVVDLTALKFKVLSYLMHNTDKVISRTELVEH 177 Query: 178 LYDGRDEPEVKIIDVFI 194 +Y + + I+VFI Sbjct: 178 IYKQDFDRDSNTIEVFI 194 >gi|332358234|gb|EGJ36062.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 234 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTYVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESRMMEFLMLNAQKSLSTQEIFRHVW- 179 Query: 181 GRDEPE---VKIIDVFICKLRKKL 201 +DE E + ++I LR+KL Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203 >gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 231 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 120/229 (52%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L+ E F V + G G+++ + D IILD+ L + G Sbjct: 3 KILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTEAPDLIILDIMLPGMDGLS 62 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 V R L A + P+ +LS DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 63 VCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARLRRQ 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + I G L ++ D V V G + LT KE++++ L+ +++ L Sbjct: 123 TTDNATQETGRIAVGKLIIDQDRFVVSVNGVKQDLTPKEFELLRYLARHPGKVFSRDFLL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + +DV I +R+KL G +IETV G GY +E Sbjct: 183 EQIWGYEYTGDSRTVDVHIRHIRQKLEQIPGAPQFIETVRGVGYRFKEG 231 >gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 236 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 126/227 (55%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ + + + LK + FNV G +G+++ + + DA ILD+ + + GF Sbjct: 9 VKVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + PV L+ ++E+++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 69 ELLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRG- 127 Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G +S + DL++N + V G + L+ E+ ++ L L L+K L Sbjct: 128 GSVESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKIL 187 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++++ + +++ +I LR+K+ I+TV G GYVLR Sbjct: 188 DNVWHYDFGGDGNVVESYISYLRRKVDTHE--PQLIQTVRGVGYVLR 232 >gi|302530944|ref|ZP_07283286.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439839|gb|EFL11655.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 250 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 130/228 (57%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + L+ E + V G + + + + + DA++LD+ L D G Sbjct: 24 VRVLVVDDESTLAELVSMALRMEGWEVRSAGTGAEAVRIGRDFRPDAVVLDVMLPDFDGL 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVLR +R PV L+ ++ED++ GL +G DDY++KPF+ EE+ R+RA++RR+ Sbjct: 84 EVLRRMRAETPYLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRLRALLRRAG 143 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G S +V GDL+++ D++ V G + LT E++++ L L+K L+ Sbjct: 144 GVSGATGSQLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPRRVLSKAQILDR 203 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + I++++I LRKK+ A + I T+ G GYVL+ A Sbjct: 204 VWSYDFGGQANIVELYISYLRKKID--ADREPMIHTMRGAGYVLKPAA 249 >gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGRAALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 119 KKAEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|219523854|gb|ACL14890.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica] Length = 224 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L ++ L+ V D ED E + + D I+DLGL D Sbjct: 2 MRVLVVEDNALLRLHPKVHLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 59 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 221 >gi|254479597|ref|ZP_05092907.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034471|gb|EEB75235.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 231 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K L I+ L+ E + + GE+ +++ K D IILD+ L + GF Sbjct: 4 KILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL+ LR + ++ P+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VLKTLRQS-MTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELIARVKANLRRVSF 122 Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G Q+ I+ +L +++ VE I LT +E++++ L L K ++E L + Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++ +DV I +LR+K+ + +I T G GY Sbjct: 183 WGYEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGY 223 >gi|317499546|ref|ZP_07957810.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893200|gb|EFV15418.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 224 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59 +IL+++DDK L ++++ N Y T DG+E E D I+LD+ + + G Sbjct: 4 KILVVDDDKEL---VKMLCSYFNMKQYETITATDGMEALNKIEMKPDIILLDINMPRMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R +K+ P+ L+ +DK+ GL SG DDYI+KPF+ EL ARI ++R Sbjct: 61 IEVCRLIR-SKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKRE 119 Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H Q ++ ++ K V + GHR+ T EYQ+IE LS+ KE Sbjct: 120 ERHQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYAQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + I + ++RKK+++ + K YIETVWG GY Sbjct: 180 VCGYDAEGDSRTITELVRRIRKKIADYS-EKEYIETVWGIGY 220 >gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM 14600] gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM 14600] Length = 233 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 10/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 +I++++D+ + + L + ++V GE+ ++L FY E IILD+ L + Sbjct: 12 KIMVVDDEMRIRKIVRDFLVRDGYDVVEAQDGEEALDL--FYQDHEIGLIILDVMLPKLS 69 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF+V R +R P+ IL+ S +D+++G G D+YISKPF+ + LVAR++AI+RR Sbjct: 70 GFDVAREIRETS-KVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILRR 128 Query: 119 SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S Q+ L+ G + ++ A TV V G I L+ KE++++ + L++E LN Sbjct: 129 SGVEEQAKLLEAGGIRLDFVAHTVTVDGREIMLSAKEFELLAYFMENRGIALSREKILNS 188 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++D + + ID + KLR K+ +YI T+WG GY Sbjct: 189 VWDYDYFGDARTIDTHVKKLRAKIGEKG---SYIRTIWGMGY 227 >gi|227529760|ref|ZP_03959809.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350244|gb|EEJ40535.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 229 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + +E+ +++E + G++ + +L + IILDL + ++ G Sbjct: 1 MKILVVDDDKEIVQLLEIYIRNEGYEPVTAYDGKEALTKLNTNPDIGLIILDLMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ +LS ++ DK++GL SGADDY++KPFN E++AR+++++RRS Sbjct: 61 MQVIKQVR-KDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +G + ++ G L++N D+ V+ ++G I LT E+ ++ LL+ N + + Sbjct: 120 QGEVTNDTPDILNVGPLTINKDSHEVKTIKGDTIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TV G GY Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVLGVGY 224 >gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 235 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 123/233 (52%), Gaps = 12/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I+LIED+ ++ I+ L+ + + V G G++L + +FD +ILD+ L ++ G + Sbjct: 3 KIILIEDETSVVSFIKKGLQENGYEISVAFDGRTGVQLVQANDFDLVILDIMLPEMNGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ L+ + + E+ V GL+SG DDY+ KPF ELVAR+++++RRS Sbjct: 63 VCKEIRKTNQSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLLRRSNN 122 Query: 122 HAQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + I DL VN K V G I LT EY+++ ++ Sbjct: 123 NGPQEIAEPEPDNEHVFQFSDLIVNDYTKKVTRGGEEISLTSTEYKLLLYFLNNPEKVIS 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + L+ ++ E ++DV++ LRKKL N K I TV G GYVL++ Sbjct: 183 RAEILDAVWGVNYELGTNVVDVYVNYLRKKLDNQEDNK-LIHTVIGMGYVLKK 234 >gi|153814388|ref|ZP_01967056.1| hypothetical protein RUMTOR_00598 [Ruminococcus torques ATCC 27756] gi|145848784|gb|EDK25702.1| hypothetical protein RUMTOR_00598 [Ruminococcus torques ATCC 27756] Length = 234 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD + ++ L+ E + G + + + + I+LDL L IPG EV Sbjct: 11 VLIVEDDVNINGLLKEALEKEGYICTQAFSGTEARMILQGERYSVILLDLMLPGIPGEEV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 LR +R K +TPV IL+ +I+DKV L+ GADDY++KPF+ +E+ AR+ +RR+ Sbjct: 71 LRDIR-KKGNTPVIILTAKDTIDDKVEFLRGGADDYVTKPFDIKEVTARVEVQIRRAETT 129 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + +L +N TV+V + H+T +E+ ++ELL +KE + Sbjct: 130 GRKEEEHRFTYQELELNKGDFTVKVGNTELPHITKQEFSILELLLKHPKKVFSKEEMFEY 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + E K +DV I +RKK+ A K YIETVWG GY L Sbjct: 190 AWEEQYMGETKTLDVHISNIRKKIK-AVTDKEYIETVWGIGYRL 232 >gi|54112871|gb|AAV29069.1| NT02FT1860 [synthetic construct] Length = 228 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L + L+ E V + GE + +D ++LD+G+ G Sbjct: 1 MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 EVLR +R I P+ +L+ +ED+++GL GADDY++KPF +ELVARI+AI R Sbjct: 61 EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RS I GD S N ++TV G I ++ KE ++ +L + K L Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y E + ++V + LRKK++ N+I+T+ G GY+++++ Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYLVQKD 224 >gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942] gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942] Length = 236 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E L+ E + V+ G + +E+ + + D I+LD+ L + G E Sbjct: 5 KILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVEEIQPDLILLDIMLPNKDGVE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVR-KKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQLT 123 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 124 TAPAEEESSSNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + N+I T G GY LR +D Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 236 >gi|256394226|ref|YP_003115790.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360452|gb|ACU73949.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 242 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 1/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD AL + L F V G+ + + DA++LD+ + I G + Sbjct: 9 RLLVVDDDPALRRGLGRALGLSGFAVETAADGQAALAVLGGGGVDAVVLDVSMPGISGVD 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R LR PV +LS + + D++ GL +GADDY+ KPF+ EL R+RA++RR R Sbjct: 69 VVRRLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRRGRP 128 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ + ++ DA+TV G + LT +E+ ++E+L LT++ L+ ++ Sbjct: 129 VPHGVVAACGIVMDTDARTVTAAGCPLELTRREFDVLEVLVRNAGAVLTRDQLLDRVWGY 188 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + +D + LR+KL A + TV G G+ LR Sbjct: 189 DFQVRSDAVDTVVSYLRRKL-EADDRPRVLHTVRGVGFALR 228 >gi|227821360|ref|YP_002825330.1| putative two-component response regulator transcriptional regulatory protein [Sinorhizobium fredii NGR234] gi|227340359|gb|ACP24577.1| putative two-component response regulator transcriptional regulatory protein [Sinorhizobium fredii NGR234] Length = 233 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 128/226 (56%), Gaps = 4/226 (1%) Query: 1 MRILLIEDD-KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+IL++EDD +A A+ + ++ + + +D GE G+ + +DA+++D L G Sbjct: 5 MKILIVEDDLEAAAYLAKAFREAGIVSDHASD-GESGLFMASENAYDALVVDRMLPRRDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ LR I TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ + RR Sbjct: 64 LSLISELRRRGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRK 123 Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q ++ GDL ++ A +V QG I L +E++++E L +T+ M L ++ Sbjct: 124 GTPDQDMVYRVGDLELDRLAHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +D +P+ +IDV + +LR K+ + TV G GY+++++ Sbjct: 184 WDYHFDPQTNVIDVHVSRLRSKIEKDF-EPPLLRTVRGAGYMIKDD 228 >gi|226304543|ref|YP_002764501.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183658|dbj|BAH31762.1| putative OmpR family two-component response regulator [Rhodococcus erythropolis PR4] Length = 237 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ ALA + L E F V + G + + +E I+LDL L G E Sbjct: 13 RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGME 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + + +LS DKV GL +GADDY+ KPF ELVAR++A++RR R Sbjct: 73 VCRRIRTFSDAY-ILMLSARGEESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRA 131 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + L L +++ A+TV V + + LT E+ ++ L+ R + ++ + + Sbjct: 132 SSLLPKVLPTPPGLDIDVLARTVRVDDNLVDLTPTEFTLLSALASRPDAAWSRAEIIASV 191 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + I+DV + LR+KL + A +I TV G GY LR + Sbjct: 192 WGSSWFGDQHIVDVHVRGLRRKLGDDATDPRFIRTVRGVGYSLRSS 237 >gi|282601049|ref|ZP_05980532.2| DNA-binding response regulator DltR [Subdoligranulum variabile DSM 15176] gi|282570439|gb|EFB75974.1| DNA-binding response regulator DltR [Subdoligranulum variabile DSM 15176] Length = 232 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 127/234 (54%), Gaps = 12/234 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+IEDDK L + L+ + GE G+EL +DA LD L + G Sbjct: 4 VRILIIEDDKNLCQIMRAGLQDAGIDSDFCHDGETGLELLLHNCYDACCLDRMLPSMDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R AK+S PV +L+ M ++DKV GL++GADDY++KPF ELVAR+ A++RR Sbjct: 64 TILKKARAAKVSAPVLMLTAMGGLDDKVDGLEAGADDYLAKPFAMRELVARLHALLRRP- 122 Query: 121 GHAQSLIVTGDLSVN-----LDAKTVEVQGHRIH--LTGKEYQMIELLSLRKNTTLTKEM 173 +Q++ V ++ LD +E+ G + H L+ KE ++E+ + T+E Sbjct: 123 --SQAMAVEESNQIHYEDATLDCNQLELCGPKGHCQLSKKEADLLEVFFRYPHQLFTRER 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L+ ++ E E ++ +I +RKKL AG I T+ G GY L EN D Sbjct: 181 LLSRVWGDDTEIEESNLNTYIHFVRKKLKK-AGICLTITTIRGVGYRL-ENIHD 232 >gi|153954268|ref|YP_001395033.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347149|gb|EDK33685.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 231 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDDKALA IE L E ++V + +E FD ++LD+ L D G++ Sbjct: 3 KILLLEDDKALALGIEFTLMDEGYDVVKCSYAREAVEAFNSEVFDILVLDIMLPDGNGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K PV L+ + V GL GADDYI+KPF +E V+RI+AI+RR+ Sbjct: 63 VCKYVR-KKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + L+A+T+E +GH + L+ +EY+++ L +++E L++L Sbjct: 122 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 181 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG E + + V+I ++R+K+ + YI+T G GY Sbjct: 182 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGY 222 >gi|119964678|gb|ABM17107.1| response regulator receiver [Sulfobacillus acidophilus DSM 10332] Length = 229 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 121/220 (55%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++DD + + L+ F+V G + + + D ++LDL L ++ GF+V Sbjct: 1 MLLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 L +R + PV +L+ + ED++ GL GADDY+ KPF+ ELV+R+RA++RR + Sbjct: 61 LAEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLA 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L+ L V++ + V+ ++LT +E+ ++ L+ ++E L+ ++ Sbjct: 121 PADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + +DV + +LR+KL + Y+ETVWG+GY Sbjct: 181 GLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGY 220 >gi|24214711|ref|NP_712192.1| response regulator containing a signal receiver domain and a DNA/RNA polymerase-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|45657759|ref|YP_001845.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24195704|gb|AAN49210.1| response regulator containing a signal receiver domain and a DNA/RNA polymerase-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|45600999|gb|AAS70482.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 240 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL ED+ + +I+++L+SE F + G++ I L K D ++LD+GL D GFE+ Sbjct: 22 ILLTEDEPGIRDTIQIVLESEGFKMIYAMTGKECISLLK-ESPDLLVLDVGLPDGSGFEI 80 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR K S PV +L+ S D+V GL+ GADDY+ KPF+ ELVARI+A++RR G+ Sbjct: 81 LKELR-KKNSIPVILLTARESELDRVLGLELGADDYMVKPFSPRELVARIKAVLRRYDGN 139 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ + + D K + G + LT EY+ + L R T+E ++ ++ Sbjct: 140 SEK--KQTEFLTDEDRKIIYYYGKSLSLTPYEYKTLLLFLKRPGKIFTREEIMDRVWTEP 197 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E + +D I +R +L + IET G+GY L++ Sbjct: 198 EESFDRAVDTVIKNIRFRLKEIRPDLDPIETKRGQGYGLKDT 239 >gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W] gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W] gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 227 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++L L+ E + + G + +E +D I+LD+ L +I G E Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR +R+ P+ +L+ S+ DKV GL GA DYI+KPF EEL+ARIRA +R S Sbjct: 64 VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + S DL LD KT EV+ I LT +E+ ++ L +N L +E + Sbjct: 124 VKEEENSSYQIADLY--LDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVT 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + ++DV+I LRKK+ + I TV G GYVL+ Sbjct: 182 NVWGFDYYGDTNVVDVYIRYLRKKV-DCNVDVPLIHTVRGVGYVLK 226 >gi|330718091|ref|ZP_08312691.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 229 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 128/230 (55%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ LK+E + + G++ + +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDNEIAELLEIYLKNEGYEPVMASDGKEALSKLNTNPDTSLMILDVMMPNMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+R+++RR+ Sbjct: 61 LDVVKTVR-KDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q ++ G L +N D+ V+ V G ++LT E+ ++ LL+ N + + Sbjct: 120 ENAVQDKAPDVLDIGSLIINKDSHEVKTVAGDLVNLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G I+TVWG GY + N Sbjct: 180 FEKVWQQESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGYKIEVN 229 >gi|229592497|ref|YP_002874616.1| putative two-component system response regulator protein [Pseudomonas fluorescens SBW25] gi|229364363|emb|CAY52131.1| putative two-component system, response regulator protein [Pseudomonas fluorescens SBW25] Length = 220 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 125/221 (56%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+AL I + L +E + + G + + FD ++LDLGL + G Sbjct: 1 MRLLLVEDDRALGQGIRVALGAEGYTLDWLQDGVAALHALRTESFDLLLLDLGLPRLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR + PV IL+ +++ GL +GADDY+ KPF+ EEL AR+RA++RRS+ Sbjct: 61 DLLQQLRAEQHDVPVLILTARDGTAERIAGLDAGADDYLVKPFDVEELKARVRALLRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ ++ +S++ + V Q I +T EYQ++ L +R +T+E LY Sbjct: 121 GRAQPMLEHAGISLDPATQQVRYQDADIIVTPMEYQLLHQLMVRPGKVVTRERLSRALYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D E ++V I LRKKLS I TV G GYVL Sbjct: 181 WQDRVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYVL 216 >gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 223 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E K+ E + +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--KWNEGPNVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 119 KKKEVTVSHEVIGAGEIKICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032] gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ + I L+ + F++ + G + + + D ++LD+ + D+ GF Sbjct: 5 MHILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPVDLVVLDIMMPDMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R P+ L+ S ED+++GL+ GADDYI KPF+ EL ARI +RR R Sbjct: 65 EVCQRIRQTS-QIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIETTLRRIR 123 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + +S I GD+ ++ D + V + I+LT +E+ ++ L L + ++E L Sbjct: 124 GLSLKRSRIQFGDMEIDQDGRQVYILQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKL 183 Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++ +D I LR KL G + +I+TVWG GY E Sbjct: 184 WESHSTSGSLRTVDTHIKTLRLKLK---GAERHIKTVWGVGYKFEE 226 >gi|110801905|ref|YP_697561.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682406|gb|ABG85776.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 223 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ I++ L+ E + D +EL D IILD L DI GF Sbjct: 1 MKILVVDDEVSILQLIKMNLEIEGHIPITAENALDALELVIKERPDIIILDAMLPDISGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116 ++ ++ P+ +L+ S I DK+ GLQ GADDYI+KPFN EL+ RI + I Sbjct: 61 NLIPKIKNID-DIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHIS 119 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ + L + GDL++ LD + ++ I+LT KE++++ L KN ++E LN Sbjct: 120 SDSKKKVKDLTI-GDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLN 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + +D+ I +LRKKL +NYI+T++ GY L E Sbjct: 179 KVWGYDFEGTTRAVDILIQRLRKKLGPC---QNYIKTLYKAGYKLDE 222 >gi|17232666|ref|NP_489214.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134312|dbj|BAB76873.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 601 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ + + L S+++ V G++G + + Y +D I+LDL L + G Sbjct: 1 MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGQEGWDFAELYTYDLILLDLILPKLDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + TP+ +L+ + KV GL +GADDY++KPF+ +EL+ARIRA++RR Sbjct: 61 SFCRQLRASGNQTPILLLTSQDTSITKVTGLDAGADDYVAKPFDFQELLARIRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 L+ +L LD T EV G +HLT KEY ++EL + + ++ L Sbjct: 121 SALPPLLEWNNL--RLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQL 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + P + I LR+KL A ++ I+TV+G GY L+ Sbjct: 179 WSFEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLK 222 >gi|332526604|ref|ZP_08402711.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332110867|gb|EGJ11044.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 224 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 123/230 (53%), Gaps = 15/230 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTD--- 56 MR+LL+EDD+ + S+ L+ E V +V D+ L FD ++LDLGL Sbjct: 1 MRLLLVEDDRMIGESLRAALRLEGHAVDWVRDVAAARATLAS-ERFDCVLLDLGLPPGGP 59 Query: 57 -----IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111 G +VLR LR +TPV +L+ + D+VRGL +GADDY+ KPF +EL AR Sbjct: 60 PGSPPADGLDVLRELRGRADTTPVIVLTARDASGDRVRGLDAGADDYLVKPFEFDELTAR 119 Query: 112 IRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 IRA+ RR G A L+ G ++++ + V G + L+ +E+ ++E L R L++ Sbjct: 120 IRAVTRRHGGRAAPLLTHGGVTLDPATRQVTKDGQPVLLSSREFAVLEALMQRPGAVLSR 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + LY D E + V++ +LR+KL G ++I + G GY L Sbjct: 180 AQLEDRLYGWGDAVESNAVSVYVHQLRRKL-----GADFIRNMRGVGYFL 224 >gi|295100030|emb|CBK89119.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium cylindroides T2-87] Length = 231 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDDK++ + I L++ ++ + G++ + + D ++LDLGL DI G EV Sbjct: 6 VLVVEDDKSVRNLIVTTLQANDYPYTSAENGKEALSKIETERPDVLLLDLGLPDIDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ LR + P+ ++S S +DK++ L GADDY++KPF+ +EL+AR+R RR Sbjct: 66 IKELRTWS-NMPIIVISARSEDKDKIQALDMGADDYLTKPFSVDELLARLRVTQRRLTMI 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S + S+ G L+++ A V ++HLT E++++ LLS LT + Sbjct: 125 SSNVSNSVFHNGKLTIDYSAGCAFVDEQQLHLTPIEFKLLCLLSKNVGKVLTHTYLTKEI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E ++ + VF+ LRKKL +YI+T G GY Sbjct: 185 WGTSWETDMASLRVFMATLRKKLEAKDNSAHYIQTHIGVGY 225 >gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] Length = 256 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++ + + L+ E + VY G +G +L ++ D IILDL + G+E Sbjct: 23 RVLIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDLFLTHQPDLIILDLMMPKKDGWE 82 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +R + + P+ +L+ D++ GL GADDY++KPF+ ELV R++ I+RR Sbjct: 83 LCEEIR-QQSNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGSQ 141 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ +I DL + + V V +++ LT KE++++ L++ ++ Sbjct: 142 VPIQAKESLTEVIEFPDLKIYPKTRCVLVCENKVELTAKEFEVLYLMAKHPKQVFSRSQL 201 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++D E I+ V + +LR KL +I TVWG GY N ET Sbjct: 202 LELIWDTEHEVATNIVTVLVSRLRDKLEKHTIKSRWIHTVWGIGYRFEPNGGSET 256 >gi|116620224|ref|YP_822380.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223386|gb|ABJ82095.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 231 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL EDD L ++ L++E + V G+ + +D I+LD+ L GF+ Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + LR ++I P+ +L+ + DKV GL+SGADDY++KPF EL+ARI A++RR+ Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R G ++V+ V G + L+ +EY+++ L T+T+E L + Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +DV + LR+KL Y++TV G GY L Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >gi|116617476|ref|YP_817847.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432676|ref|ZP_03914649.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096323|gb|ABJ61474.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351558|gb|EEJ41811.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 230 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 128/230 (55%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ LK+E + + D G++ + +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDIEIAELLEIYLKNEGYEPIMADDGKEALSKLNTNPDIALMILDVMMPNMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+R+++RR+ Sbjct: 61 LDVVKTVR-KDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q ++ G L +N D+ V+ G ++LT E+ ++ LL+ N + + Sbjct: 120 ENAVQDQTPDVLDIGSLIINKDSHEVKTSTGDLVNLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G I+TVWG GY + N Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229 >gi|213610069|ref|ZP_03369895.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 215 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL ED++ LAH +E L F V G L + ++LD+ + + G Sbjct: 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALMVLDINMPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ LR + PV +L+ S++ D+V+GL GADDY+ KPF EEL AR+RA++RRS Sbjct: 61 EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G+L + D +QG + LT +E ++ +L R+ ++++ ++ Sbjct: 121 GLVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DE + I+++I +LRKKL G I T+ G GY Sbjct: 180 LNDEVSPESIELYIHRLRKKLQ---GSDVRITTLRGLGY 215 >gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51] gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++DD+ + + L L++E +++ D G +E + FD +ILDL + + G+ Sbjct: 1 MKILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDSFDLVILDLMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V + LR + P+ +L+ D+V G GADDY+ KPF+ EL AR++A++RR Sbjct: 61 TVCKVLR-KETKIPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRRLE 119 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + LI ++N + V V + LT KE+ ++ +L+ + T++ LN + Sbjct: 120 GEPTKEHLITYPGFTINQITREVVVDETVVKLTAKEFDLLLVLAKNPSRIFTRDQLLNTV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +D I +LR KL + G ++I+TV G GY Sbjct: 180 WEYDYCGDSRTVDTHINRLRSKLESQVGLSDFIQTVRGVGY 220 >gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125] gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125] Length = 236 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 129/233 (55%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L+ E F V G + +E + D I+LD+ L + G E Sbjct: 5 KILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEKPDLILLDIMLPNKDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 65 VCREVR-KQFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQT 123 Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I GDLS++ +A V+ +G I LT +E+++I L+ +T+E L Sbjct: 124 SGDDQLSYKEISVGDLSIHPEAYLVKKRGESIELTHREFELIHYLAKHLGQVMTREHLLQ 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR----ENA 225 ++ +V+ +DV + +LR+K+ + +I T G GY LR ENA Sbjct: 184 AVWGYDYFGDVRTVDVTVRRLREKVEDNPSYPTWIITRRGVGYYLRHPEQENA 236 >gi|315150222|gb|EFT94238.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] Length = 230 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 9/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD ++A + L+ + V + G++G+E FD IILD+ L + GFE+ Sbjct: 5 VLIIEDDPSIADLQKDYLEINDMTVTIEHDGKNGLEAALNEPFDLIILDVMLPTMDGFEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 RA+R K TP+ I+S DK+RGL GADDYI KPF+ ELVAR +A + R + Sbjct: 65 CRAIRKKK-QTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 L+ +++V+ A V V + + T KEY+++ L N KE Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183 Query: 178 LY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ D D EV + V I ++R+KL A + IET+WG GY Sbjct: 184 VWGFDALDT-EVSTVVVHIKRIREKLKKANLSDSPIETLWGSGY 226 >gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] Length = 233 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K + ++L L+ E ++V GE+G+E K +D I+LDL + + G EV Sbjct: 9 ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSGEEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +L+ I +KV L GADDY++KPF EEL ARIR +R Sbjct: 69 CKIIRKTS-NIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSNF 127 Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + + D L +NL + I LT EY + L L K +++E LN ++ Sbjct: 128 SNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEVWGY 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E KI+DV+I LRKK+ +I TV G GYVL++ + Sbjct: 188 DYMGEEKIVDVYINALRKKIDYDEN--KFIHTVRGFGYVLKKES 229 >gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1] gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1] Length = 233 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 9/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E F V GE+G++L K ++ I+LDL + + G ++ Sbjct: 6 ILIVDDEKEIRNLISIYLKNEGFQVLEACDGEEGLQLVKKHKVHLIVLDLMMPKVDGIKM 65 Query: 63 LRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +R VA++ P+ +L+ S DK+ GL GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREVAEM--PIIMLTAKSQDMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRRYLK 123 Query: 119 -SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S H+ + + GDL +N V V R+ LT +E+ ++ELL ++ E Sbjct: 124 MSGLHSSNKEELEVGDLRINTATHEVFVNNERVKLTPREFAILELLVSNPGIVMSAEQIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R+++ + YI+TVWG GY Sbjct: 184 EKVWKEEAFQSENTVMVHIRKIRERIETNSRNPQYIKTVWGVGY 227 >gi|256833021|ref|YP_003161748.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686552|gb|ACV09445.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 232 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 14/233 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+A +I L +E + V G ++ + DA++LD+ L I G EV Sbjct: 4 ILIVEDEPAIATAIAQRLTAEGWRTEVARDGLAAVDAAARLQPDAVVLDVMLPGIDGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R ++ A PV +L+ D + GL GADDY++KPF+ ELVAR++A++RR Sbjct: 64 CRRIQ-ADRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARLKALLRRVDRA 122 Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 AQ S I GD+ V+ + V IHLT E+ ++ +L+ T LT+E Sbjct: 123 AQASVSPAEESKITVGDVVVDRQQRRVYRGVEEIHLTPTEFDLLVMLASAPKTVLTRERL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++D D + +D I LR+KL G + I TV G GY +D Sbjct: 183 LAEVWDWVDASGTRTVDSHIKALRRKL-----GADLIRTVHGVGYAFEPPEED 230 >gi|158318678|ref|YP_001511186.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158114083|gb|ABW16280.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 219 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ LA +I L+ V G +EL + +D I+LD L + G Sbjct: 1 MRILVVEDEAMLAEAIAEGLRQRAMAVDTCGDGASALELATLHPYDVIVLDRDLPAVHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V RA+ A T V +L+ I D+V G GADDY++KPF ELVAR++A+ RR+R Sbjct: 61 DVCRAVVAAGGDTRVIMLTAAGDIADRVHGFGVGADDYLTKPFAFAELVARVQALGRRAR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + +++ V G + L+ KE+ ++E+L + ++ E L +D Sbjct: 121 AAVPPVLTRAGVELDVPRHQVSRDGRFVPLSRKEFAVLEVLMRADGSVVSAEELLEKAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P + + + LR+KL G IETV G GY ++ Sbjct: 181 SNVDPFTNAVRMAVMTLRRKL----GPPPLIETVAGVGYRMK 218 >gi|300702737|ref|YP_003744337.1| transcriptional regulatory protein [Ralstonia solanacearum CFBP2957] gi|299070398|emb|CBJ41693.1| Transcriptional regulatory protein [Ralstonia solanacearum CFBP2957] Length = 243 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/240 (32%), Positives = 129/240 (53%), Gaps = 18/240 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLIEDD LA + L + F V V G+ + + ++ +ILDL L + G E Sbjct: 9 KVLLIEDDDRLAQLVSEYLGNYEFTVEVVRRGDTAVAAVREHQPALVILDLMLPHMDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R A PV IL+ D+V GL+ GADDY+ KP LVAR RA++RR Sbjct: 69 VCRRIR-AFSRVPVLILTARVDTYDQVAGLEIGADDYVLKPVEPRLLVARARALLRRVVP 127 Query: 119 SRGHAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + A+ ++ V G+L+++ +TV +G + L E+ ++ +L+ T L+++ Sbjct: 128 AMPAAEPVVPHDDVLVFGELAISPPNRTVIWRGQPVDLKTAEFNLLLILARAAGTVLSRD 187 Query: 173 MFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L L +DG D + +D I +LR++ +A+ + I+T+WGRGY+ +A +E Sbjct: 188 DILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 243 >gi|238061758|ref|ZP_04606467.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237883569|gb|EEP72397.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 231 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 6/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A+A + L L + F V++ G G+ + A +LD+ L + G E+ Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R LR A TPV L+ D++ GL+ GADDY++KPF+ ELVAR+RA++RR+ G Sbjct: 71 CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTVGV 130 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + G ++++ +TV V G I LT E+ ++ L R T+ L ++ Sbjct: 131 PEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELLAAVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +DV + ++R KL AAG I T G GY Sbjct: 191 GYAAHSSTRTVDVHVAQVRAKLGGAAG---VIRTHRGVGY 227 >gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 235 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ + + + L+ + F V + G + +++ + + DA ILD+ + + GF Sbjct: 8 VKVLVVDDEPNIVELLTVSLRFQGFEVESVNSGSEALKVAREFRPDAYILDVMMPGMDGF 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+L LR + PV L+ ++ED++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 68 ELLSKLRADGLDGPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGN 127 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + S + DL++N D V G I L+ E+ ++ L L L+K L+ Sbjct: 128 VTADADSDSTLRYADLTLNDDTHEVTKSGEIIDLSPTEFNLLRYLMLNAEVVLSKAKILD 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 188 NVWHYDFGGDGNVVESYISYLRRKVD--TGDVPLIHTVRGVGYVLR 231 >gi|254472679|ref|ZP_05086078.1| two-component response regulator [Pseudovibrio sp. JE062] gi|211958143|gb|EEA93344.1| two-component response regulator [Pseudovibrio sp. JE062] Length = 225 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + +E L + G D E+D I+LD + G Sbjct: 1 MRILLLEDDIEIGTWVEDGLSKAGHVIDWVKDGHDAFLNATTREYDVIVLDRMTPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 VL+ALR S PV L+ + S+ED+V GL +G DDY+ KPF EL+AR+ A+ RR Sbjct: 61 SVLKALRSTNNSVPVLFLTALGSVEDRVEGLDAGGDDYLPKPFAFSELLARVSALGRRPS 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G S + +NL + G + L KE+++ E K LTK M L Sbjct: 121 TNSGETTSCLEVEKFQLNLLKQQCTRAGQPVPLNAKEFRLFETFIRNKGRVLTKNMLLEK 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D +P +++ I +LR K+ I T+ G GY+L Sbjct: 181 VWDMNFDPTSSVVETHISRLRSKIEKPF-DIELIRTIRGAGYIL 223 >gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 226 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 5/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIED+ LA + L+ F V + G+ G+ L + ++ D ++LDL L + G +V Sbjct: 4 VLLIEDETELARVAQSYLEKAGFQVILASRGDTGLSLFRQHKPDLVLLDLNLPGMDGLDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 R +R + P+ +++ D++ GL+ GADDYI KP++ ELVAR+RA++RR S Sbjct: 64 AREIR-RQSDVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLRRFNRS 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G +Q ++ G+L V+LD TV+ I LT E+Q++ L + T+ L + Sbjct: 123 SGGSQ-ILREGNLEVDLDTHTVKRGDEEIFLTPTEFQLLSTLMAQPGRVFTRLQLLEAIQ 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + ID I LR K+ +Y+ETV+G GY R+ Sbjct: 182 GVAYEGYERTIDAHIKNLRAKIEEDPHHPHYVETVFGVGYRFRKG 226 >gi|258513128|ref|YP_003189384.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01] gi|258542677|ref|YP_003188110.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01] gi|256633755|dbj|BAH99730.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01] gi|256635031|dbj|BAI01005.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01] gi|256636814|dbj|BAI02783.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-03] gi|256638086|dbj|BAI04053.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-03] gi|256639867|dbj|BAI05829.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-07] gi|256641140|dbj|BAI07100.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-07] gi|256642923|dbj|BAI08878.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-22] gi|256644195|dbj|BAI10148.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-22] gi|256645978|dbj|BAI11926.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-26] gi|256647250|dbj|BAI13196.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-26] gi|256649031|dbj|BAI14972.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-32] gi|256650303|dbj|BAI16242.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-32] gi|256652018|dbj|BAI17952.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653294|dbj|BAI19226.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655075|dbj|BAI21002.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-12] gi|256656347|dbj|BAI22272.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-12] Length = 223 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L +++ ++ + V ED ++D ++LDLGL D G Sbjct: 1 MRILIVEDEHDLGAAVQERVRQDGHAVDWFMTLEDARAAVATVDYDFMLLDLGLPDGNGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR +R T + I + I D++ GL GADDYI KP++ ELVARI A+ RR Sbjct: 61 DLLREIRRTSFDTAILITTAEDQISDRIAGLSDGADDYIVKPYDLNELVARIAAVARRYV 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ G++ ++ + ++V + LT +E+ ++ELLS R +++ LY Sbjct: 121 APRRQACYQMGEIVIDRENRSVTRNEMELELTAREWAIMELLSRRPGRIYSRQQIDTALY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++VFI +LRKK+ N I+TV GRGY L + A Sbjct: 181 ALDQDVGSNTVEVFISRLRKKVGNTV-----IKTVRGRGYCLADRA 221 >gi|218134831|ref|ZP_03463635.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC 43243] gi|217990216|gb|EEC56227.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC 43243] Length = 231 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 11/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ +A I L L E F GE + + D +ILDL L + G++ Sbjct: 6 KILIVDDDENIAELIALYLTKECFETMTVHDGEAALAAVTEFRPDLMILDLMLPGMDGYQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R + P+ +LS DKV GL+ GADDY+ KPF+ +ELVAR++A++RR Sbjct: 66 VCREVRRNN-NLPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A+++ G LS+NL +V G + + KE +++ L+ N T+E Sbjct: 125 PKADTAADAKTVEYPG-LSINLANYSVIYDGTPVEMPPKELELLYFLASSPNQVFTREQL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+H++ + + +DV I +LR+K+ + I TVWG GY Sbjct: 184 LDHIWGYEYLGDTRTVDVHIKRLREKIKDHEQWS--IATVWGIGY 226 >gi|116490235|ref|YP_809779.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|118586491|ref|ZP_01543935.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163] gi|290889617|ref|ZP_06552707.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429] gi|116090960|gb|ABJ56114.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] gi|118433055|gb|EAV39777.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163] gi|290480815|gb|EFD89449.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429] Length = 230 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 125/224 (55%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 +IL+++DDK +A +E+ +++E + GE+ + L + +ILD+ + + GF Sbjct: 3 KILVVDDDKEIAELLEIYIRNEGNEPVLAYSGEEALSRLNTNPDIALMILDVMMPGMNGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V++A+R + P+ I+S + DK++GL +GADDY++KPFN E++AR+R+++RRS Sbjct: 63 DVVKAVR-KDTNIPILIVSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRSS 121 Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G L++N D+ V+ G + LT E+ ++ LL+ N + + Sbjct: 122 NEVKDEIPEVIDAGALTINKDSHEVKTSDGEIVQLTALEFGILYLLASHPNRVFSADEIF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G I+TVWG GY Sbjct: 182 ERVWQTESVVSAKTVMVHVSHLRDKIKEATNGDEVIQTVWGVGY 225 >gi|330955030|gb|EGH55290.1| DNA-binding heavy metal response regulator [Pseudomonas syringae Cit 7] Length = 224 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +ST + +++ +E+KV+GL+ GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 EVLSRLR-KTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220 >gi|294789087|ref|ZP_06754326.1| QseB [Simonsiella muelleri ATCC 29453] gi|294482828|gb|EFG30516.1| QseB [Simonsiella muelleri ATCC 29453] Length = 221 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 120/219 (54%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD + + L +F G+ G + +DA++LDLGL D G Sbjct: 1 MRILIIEDDPLIGDGLYHGLSKLSFTADWFQNGKLGADALNSASYDAVVLDLGLPDCDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ R PV IL+ ++ D++ GL SGADDY+ KPF +E+ AR+ A++RRS+ Sbjct: 61 VILQTWRQTNHDIPVLILTARDALPDRLAGLNSGADDYLCKPFALDEVAARLVALIRRSK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + I G L+++ AKT ++G + LT EY ++E+L L+ N ++ + LY Sbjct: 121 GRAAADIRCGALTLDTAAKTATLRGQSLPLTRHEYMLLEMLLLQPNFIHSRAQIEDKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E E I+V + LRKK+ GK++I GY Sbjct: 181 WEQEIESNAIEVHVYNLRKKI-----GKDFIRNHRNLGY 214 >gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 231 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+K +A ++ L+ + V G++GIE K D I+LD+ + DI G+E Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEMP-DLIVLDIMMPDIDGYE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R I P+ LS S D+++G G DDY+ KPF+ +EL+ARI A +RR + Sbjct: 62 VCRKIRDTVIC-PIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++L+ +++++L ++ V V+G+ I LT KE+ ++ELLSL +KE Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + + I +R K+ N YI+TVWG GY Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGY 225 >gi|325102980|ref|YP_004272634.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] gi|324971828|gb|ADY50812.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] Length = 234 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 126/223 (56%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED++ L +I+L L+ E F V G+ +++ K +F+ IILD+ + +I GF+ Sbjct: 6 RILLMEDEEHLLEAIKLNLEMEGFFVRAVTDGKKALKVFKEEKFNLIILDVMVPEIDGFQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 V +R+ P+ L+ ++ ED++ GL+ GADDY++KPFN EEL+ R+ +++RS + Sbjct: 66 VAETIRLENSEVPIMFLTAKNTSEDRITGLKKGADDYLTKPFNLEELILRVNNLIKRSMK 125 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + + GD ++ ++ ++ + G LT KE +++LL RKN +++E L Sbjct: 126 GDDLKELNSYKIGDKTIYFNSYELKNEDGTITPLTKKETMLLKLLIERKNEAVSREQILE 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ P + ID FI RK Y ++ G GY Sbjct: 186 TVWNYDVYPSTRTIDNFILTFRKYFEPDQKNPIYFHSIRGVGY 228 >gi|304385704|ref|ZP_07368048.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304328208|gb|EFL95430.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 229 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + +++ +K+E + G++ + +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V+R +R P+ +LS + DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MQVVREVR-KDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRS 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A ++ G L++N D+ V+ + G + LT E+ ++ LL+ N + + Sbjct: 120 EKDVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG+ IETVWG GY Sbjct: 180 FERVWQQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGY 224 >gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 252 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 14/234 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + L+ F+V G D + L + + D ++LD+ L D+ GF V Sbjct: 14 LLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQNDPDLLVLDVMLPDMDGFTV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R LR A PV L+ DK+ GL G DDY++KPF+ EE+VARIRA++RR+ Sbjct: 74 TRRLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHAL 133 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ GDL ++ D V G I L+ E++++ L L N L+K L+H++ Sbjct: 134 DEEDDAVLNAGDLELDDDTHEVRRAGIYIDLSPTEFKLLRYLMLNANRVLSKSQILDHVW 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA---GGKNYIETVW--------GRGYVLR 222 + + I++ +I LR+K+ A N I+ W G GY+LR Sbjct: 194 EYDFGGDTGIVESYISYLRRKIDVAPETDEAGNPIDMEWTPMIQTKRGVGYMLR 247 >gi|226324237|ref|ZP_03799755.1| hypothetical protein COPCOM_02016 [Coprococcus comes ATCC 27758] gi|225206685|gb|EEG89039.1| hypothetical protein COPCOM_02016 [Coprococcus comes ATCC 27758] Length = 233 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 7/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDDK + + I + LK E+++ + + L D IILDLGL D G E Sbjct: 6 KILIVEDDKYIINFISMSLKKEDYDYVIAKTCGEANALFYANRPDMIILDLGLPDGDGIE 65 Query: 62 VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R ++KI P+ ++S E+K++ L GADDY++KPF EL+ARIR +R+S Sbjct: 66 IIKNVREISKI--PIIVVSARQEEEEKIQALDLGADDYVTKPFYMGELLARIRVALRKSN 123 Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + L V+ + V + G +HLT EY++++LL + LT L Sbjct: 124 QIPEEKKEKIFQCDYLKVDWEKHQVSIDGKEVHLTPMEYKILKLLIDNRGKVLTHNYILG 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E + VF+ LR+K+ G +I T G GY RE A+ Sbjct: 184 QIWGSAQGVEAANLRVFMAALRRKIEKDPGNCRFILTEVGVGYRFRETAE 233 >gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 224 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ LA IEL L E + V V G + + D IILD L + G E+ Sbjct: 4 ILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARQLNLDLIILDWMLPGVSGLEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121 R LR + P+ +L+ + V GL +GADDY+ KPF+ EEL+AR+RA +RRS+ Sbjct: 64 CRRLRASGDKVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLRRSKET 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + +++ DLS+N V + LT KE+ +++ L +T++ L ++ Sbjct: 124 DSADILMFDDLSLNRSTGEVYRGQRLVELTAKEFDLLDYLLTHPRQVITRDRILEEVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +I+V+I LR KL A K ++TV G GYVLR+ Sbjct: 184 DFMGDSNVIEVYIRYLRLKL-EANNEKRLLQTVRGVGYVLRD 224 >gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 222 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 124/218 (56%), Gaps = 4/218 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + ++ + E + + G++ +E + FD I+LD+ + GF+ Sbjct: 3 KILIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKLTNHSFDLILLDVMMPGKDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R +TPV +++ DK+ G GADDYI+KPF+ +EL+ARI+A+++RS Sbjct: 63 TLSEIR-GSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 IV GDL VN+ + TV ++G+ + LT KE+ ++ L+ + L++E L ++ Sbjct: 122 FQFEKIVYGDLEVNVFSHTVTIKGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWGF 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +D I LR++L + + I+TVWG GY Sbjct: 182 DYFGDTRTVDTHIKSLRERLGDY---RELIQTVWGVGY 216 >gi|251779485|ref|ZP_04822405.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083800|gb|EES49690.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 229 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+K++ + I L L+ E + + GED I + + + +ILDL L DI G Sbjct: 1 MKILVVDDEKSIVNLIRLNLEVEGYEPITSMTGEDAIHKFETEKPELVILDLMLPDISGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +V++ + PV +L+ S I DK+ GLQ GADDYI KPFN EL+ RI+A+ +R Sbjct: 61 DVIKRFQKIDSEIPVIMLTAKSQINDKLLGLQLGADDYIIKPFNSTELILRIKAVTKRIT 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S + I L + D + V ++ I +T KE+ + L+ N T+E L Sbjct: 121 KKSCSKNNNEIKIEKLKILKDERKVFIEEKEIFMTYKEFDTLLLMMENHNKVFTRENLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + +D+ I ++RKK+ + N ++TV+G GY L Sbjct: 181 RVWGDEYDVNTRAVDILIQRVRKKMGKYS---NKLKTVYGVGYKL 222 >gi|146283738|ref|YP_001173891.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501] gi|145571943|gb|ABP81049.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501] Length = 243 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L + V G DG L ++D ++LD+ L + G+ Sbjct: 20 MRILVVEDEIKAAEYLQQGLIECGYTVDCVSDGLDGFHLALQNDYDIVLLDVNLPTMDGW 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R K T V +L+ +E KVRGL+SGADDY+ KPF EL+ARIR ++RR Sbjct: 80 EVLELIRRRK-QTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLLRRGE 138 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A S + DL ++ G RI LT KE+ ++ LL R LT+ ++ Sbjct: 139 AVALPSNLRVADLELDPGRHRAYRSGQRIDLTSKEFALLHLLMRRTGEVLTRTEITALVW 198 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + ++DV I +LR K+ G + I T+ G GYVL Sbjct: 199 DINFDCDTNVVDVAIRRLRMKVDEPFGDR-LIHTIRGVGYVL 239 >gi|86141861|ref|ZP_01060385.1| two-component system response regulator [Leeuwenhoekiella blandensis MED217] gi|85831424|gb|EAQ49880.1| two-component system response regulator [Leeuwenhoekiella blandensis MED217] Length = 227 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 12/222 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPG 59 +LL ED+ AL ++ L++ F V DL EDG + K +E +DA++LD+ + G Sbjct: 7 LLLAEDEAALGQIVKESLETRKFTV---DLAEDGEKALKLFEQKSYDALVLDVMMPKKDG 63 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F + + +R S P+ L+ S D V G G +DY+ KPF+ EEL+ RI +V R Sbjct: 64 FTLAKEIRAKDDSIPIIFLTAKSQTSDVVEGFSIGGNDYLKKPFSMEELIVRIHNLVARK 123 Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +QS +++ GD N +T++ Q I LT +E ++ L KN L + + LN Sbjct: 124 KLQSQSEVLSLGDYKFNFPKQTLQFQAEEAILLTHREAHLLFHLIKNKNQVLDRSLILNK 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L++ D + +DVFI KLRKKL+ +I+ + RG+ Sbjct: 184 LWNSDDFFAARSMDVFISKLRKKLAK----DEHIQIINVRGF 221 >gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5] gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5] Length = 228 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ +A ++L L+ E + V + G +G+E ++LD+ L + G EV Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYGVTIKHNGTEGLEAAAEGGHSLVLLDVMLPGLSGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR TPV +L+ SI DKV GL GA+DY++KPF EEL+ARIRA +R++ Sbjct: 66 LRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTK 125 Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + DL VN + V + LT +E+ ++ + LT+E L+ ++ Sbjct: 126 TEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++DV+I +RKKL + K I T+ G GY ++ Sbjct: 186 GFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGYAIK 227 >gi|317501465|ref|ZP_07959663.1| KDP operon transcriptional regulatory protein KdpE [Lachnospiraceae bacterium 8_1_57FAA] gi|316897094|gb|EFV19167.1| KDP operon transcriptional regulatory protein KdpE [Lachnospiraceae bacterium 8_1_57FAA] Length = 233 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD ++ + I LK+ ++ V G+ + + D ++LDLGL D+ G EV Sbjct: 6 ILVVEDDTSIRNLITTTLKTNDYRYVVAMNGKMALMEATSHRPDIVLLDLGLPDMDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + + P+ ++S S DK+ L +GADDY++KPF+ EEL+ARIR RR Sbjct: 66 INNIR-SWSNMPIIVISARSEDNDKIEALDAGADDYLTKPFSVEELLARIRVTQRRISLM 124 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A S V G L ++ A + +HLT EY+++ LLS LT + Sbjct: 125 TAEMMTADSKFVNGKLKIDYSAGCAFLNDKELHLTPIEYKLLCLLSKNVGKVLTHTFIME 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ E ++ + VF+ LRKKL YI+T G GY Sbjct: 185 NIWGRNWETDIASLRVFMATLRKKLEPTEDSPQYIQTHIGVGY 227 >gi|300790732|ref|YP_003771023.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800246|gb|ADJ50621.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 249 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + + L+ E + V G + + + + + DA++LD+ L D G Sbjct: 24 VRVLVVDDEATLAELVSMALRMEGWEVRSAGDGTEAVRIAREFRPDAVVLDVMLPDFSGL 83 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVLR +R PV L+ ++ED++ GL +G DDY++KPF+ EE+ R+RA++RR+ Sbjct: 84 EVLRRMRSEAPQLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRLRALLRRAG 143 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + S +V GDL+++ D++ V G + LT E++++ L L+K L+ Sbjct: 144 GVTGASGSTLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPKRVLSKAQILDR 203 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + I++++I LRKK+ A + I T+ G GYVL+ Sbjct: 204 VWSYDFGGQANIVELYISYLRKKID--ADREPMIHTMRGAGYVLK 246 >gi|300362057|ref|ZP_07058234.1| DNA-binding response regulator [Lactobacillus gasseri JV-V03] gi|300354676|gb|EFJ70547.1| DNA-binding response regulator [Lactobacillus gasseri JV-V03] Length = 221 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 119/203 (58%), Gaps = 1/203 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ + +KS N++V G D +EL K +D IILD+ + + G Sbjct: 1 MKILLAEDEEQLSRVLVAAMKSVNYDVDAVFNGRDAVELAKKNSYDVIILDIMMPIMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ +R + T V +L+ + I+D+V GL SGADDY++KPF+ +EL+AR+R+ RR Sbjct: 61 TALKQIRKSGDKTYVLMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLRSKERRDD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + GDL++N+ + + V + I L KE Q++ L L + + L H++ Sbjct: 121 QYTPNEVEVGDLALNVSEQEL-VSHNSIRLGSKETQLLNYLMLNEGKEFSTSDLLAHVWK 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203 ++ +++ ++I LR+KL + Sbjct: 180 DENDANEEVVWIYISYLRQKLQS 202 >gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725] gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726] gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725] gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 234 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK +NF VY + G + + + + DA ILD+ + + GFE Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRVAREVNPDAYILDVMMPGMDGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + PV L+ ++ ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S + DL++N D V G I L+ E+ ++ L K L+K L++ Sbjct: 128 AEESSNDATMSYADLTLNDDTHEVTKGGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKID--TGDTQLIHTVRGVGYVLR 230 >gi|71737192|ref|YP_276924.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|289646922|ref|ZP_06478265.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|71557745|gb|AAZ36956.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326322|gb|EFW82375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320331685|gb|EFW87623.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330872407|gb|EGH06556.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330891387|gb|EGH24048.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330989497|gb|EGH87600.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 224 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +ST V +++ +E+KV+GL+ GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 EVLSRLR-KTVSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220 >gi|116619023|ref|YP_819394.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097870|gb|ABJ63021.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 235 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 128/230 (55%), Gaps = 10/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K ++ I+ L E ++V G++ +++ D ++LD L ++ G E Sbjct: 3 KVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R +K PV +++ S DKV GL+ GADDY++KPF+ ELVAR++A +R + Sbjct: 63 VLRQIR-SKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKS 121 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +Q+ I GDL ++ A V G I LT +E++++ L+ +T+E Sbjct: 122 VSQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFELLYYLAQHIGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + N++ T G GY LR Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLR 231 >gi|229015664|ref|ZP_04172650.1| Two-component response regulator [Bacillus cereus AH1273] gi|229021856|ref|ZP_04178428.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739444|gb|EEL89868.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745636|gb|EEL95652.1| Two-component response regulator [Bacillus cereus AH1273] Length = 233 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + I G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R +K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKVEENPRKPIYIKTVWGVGY 227 >gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 226 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ + + + +L+ E V V + G G+E D ++LD+ L + G E Sbjct: 3 RILIVEDEASFSDPLSWLLEREGHEVVVREDGRSGLEEFTRNPADLVLLDVMLPGMSGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR + S P+ +L+ S DKV GL+ GADDY++KP++ EL+ARI A++RR Sbjct: 63 VCRELR-RESSVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLRRRIA 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ GD+ ++ D+ V V+G + + KE++++E+L LT+ ++ + Sbjct: 122 PPAQEDHIVRVGDVELDADSHVVVVRGEPVSMPLKEFELLEMLMRNHGRVLTRAQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV I ++R K+ I T+ G GY Sbjct: 182 WGADYVGDTKTLDVHIKRVRGKVEENPSSPRMITTIRGLGY 222 >gi|226314263|ref|YP_002774159.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097213|dbj|BAH45655.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD +A + L++ ++V V G+ G++ E+D +ILDL L + GFE+ Sbjct: 4 ILIIEDDTVIAEVQKDYLEANGYSVDVATSGDRGLQKALQEEYDLLILDLMLPIVDGFEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121 + +R K + P+ ++S DK+RGL GADD+ISKPF+ ELVAR++A + R R Sbjct: 64 CKQVRKVK-NIPILLVSAKKEDIDKIRGLGLGADDHISKPFSLGELVARVKAHLARYDRL 122 Query: 122 HAQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + S +T + L A+ V + G+ + T KEY ++ L N +K Sbjct: 123 VSDSKPLTAKEEIRLRGIRIDKLARRVYINGNEVAFTSKEYDLLLFLVTHPNWVFSKTEL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ + YIETVWG GY Sbjct: 183 FEKIWGLDSYGDIATVTVHISKLREKIESDPAKPQYIETVWGVGY 227 >gi|225567891|ref|ZP_03776916.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM 15053] gi|225163292|gb|EEG75911.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM 15053] Length = 236 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD + + I L+S+N+ + G + D I++DLGL D+ G +V Sbjct: 9 VLVVEDDAPVRNLITTTLESQNYKYMTSANGSQAVMSAASGNPDIILMDLGLPDMDGVDV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ +R ++ P+ ++S S +DKV L +GADDY++KPF+ EEL+AR+R+ +RR + Sbjct: 69 IKKIRTWSVA-PIIVISARSDDKDKVDALDAGADDYLTKPFSVEELLARLRSTLRRIQYL 127 Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q S+ G L+++ A TV V IHL EY ++ LL+ LT + L+ Sbjct: 128 TQKGEEEPSVFHNGSLTIDYGAGTVYVGEQEIHLMPLEYSLLCLLAQNVGKVLTYQFILD 187 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E ++ + V++ LRKK+ + I+T G GY Sbjct: 188 KVWVNAIESDMSSLRVYMASLRKKIEKNSSQPQCIQTHIGIGY 230 >gi|222111264|ref|YP_002553528.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|221730708|gb|ACM33528.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 228 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD + +++ L V G + + + DA++LDL L + G Sbjct: 1 MQLLLVEDDATMQATLQRSLARRGMAVTALADGRAALAEWRAHPPDAVVLDLTLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R + TPV +L+ ++ D+V GL +GADDY+ KPF+ +EL AR+RA++RRS Sbjct: 61 QVLQQARAGGLRTPVLLLTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALLRRSG 120 Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G A + +V G L ++ + + + LT +E ++ L + + KE Sbjct: 121 GDTADDKQASNALVMGALRYEKESGAIYLHDAPMDLTPRELALLRTLLTQPGRAVAKERL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G+ E + + I+V + ++RKKL AG + T+ G GY+L+ Sbjct: 181 YELVFPGQSEVQYEAIEVVVYRVRKKL---AGTGVALMTLRGLGYLLK 225 >gi|121594013|ref|YP_985909.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120606093|gb|ABM41833.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 243 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD + +++ L V G + + + DA++LDL L + G Sbjct: 16 MQLLLVEDDATMQATLQRSLARRGMAVTALADGRAALAEWRAHPPDAVVLDLTLPGLDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R + TPV +L+ ++ D+V GL +GADDY+ KPF+ +EL AR+RA++RRS Sbjct: 76 QVLQQARAGGLRTPVLLLTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALLRRSG 135 Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G A + +V G L ++ + + + LT +E ++ L + + KE Sbjct: 136 GDAADDKQASNALVMGALRYEKESGAIYLHDAPMDLTPRELALLRTLLAQPGRAVAKERL 195 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ G+ E + + I+V + ++RKKL AG + T+ G GY+L+ Sbjct: 196 YELVFPGQSEVQYEAIEVVVYRVRKKL---AGTGVALMTLRGLGYLLKP 241 >gi|86609935|ref|YP_478697.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558477|gb|ABD03434.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 233 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 121/231 (52%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIP 58 RILL++D+ LA S+ L+ E + V V G EL + ++ ++LD L ++ Sbjct: 3 RILLVDDEVELADSLAQQLRREGYTVDVAYTGGRAWELLQKTGSLPYNLLVLDWMLPELS 62 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + + +R +TP+ L+ +++D+V GL +GADDY+ KPF EL+AR+RA++RR Sbjct: 63 GLSLCQRVRQVDCTTPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122 Query: 119 SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G + + + GDL ++ + + QG IHL+ KE++++E LT + Sbjct: 123 TTGTGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMTHPGQLLTHDQIYE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ G D P ++ + L ++ G I V+G+GY A D Sbjct: 183 QVWAGEDPPSSNVLAAQVRLL-RRRLRLPGAAELIHAVYGKGYRFGPVAGD 232 >gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 235 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 124/233 (53%), Gaps = 9/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + +L+ E F+V V G I+ + Y D I+LDL L I G E Sbjct: 3 KILIVDDEHHIIELVRFVLQKEGFDVKVAQDGLTAIKETENYRPDLILLDLMLPGIDGLE 62 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR + PV +++ S DK+ GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARLRRR 122 Query: 120 RG---HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 G HA + I G L V V + G ++ LT KEY+++ LL +++ Sbjct: 123 TGLIKHADRKVEEEIAYGPLVVRPARYEVFLNGEKLDLTLKEYELLVLLINNPGKVFSRD 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+ ++ + + +DV I LR+K+ +IETV G GY +E A Sbjct: 183 FLLSTIWGFDYTSDTRTVDVHIYHLRQKIERDPSQPGFIETVRGVGYRFKELA 235 >gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 207 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/198 (34%), Positives = 113/198 (57%), Gaps = 2/198 (1%) Query: 25 FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84 F V + G DG + ++D ++LD+ L D+ G+ ++++LR A PV L+ + Sbjct: 5 FMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGWRIVKSLREAGKQMPVLFLTARGGV 64 Query: 85 EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS-LIVTGDLSVNLDAKTVEV 143 +D+V+GL+ GADDY+ KPF EL+AR+R ++RR +QS + DL ++L + Sbjct: 65 DDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSAPSQSERLEVADLILDLPRRKATR 124 Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 G +I LT KE+ ++ELL+ R+ L + + + ++D + + IDV I +LR K+ + Sbjct: 125 MGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVWDMNFDSDSNAIDVAIRRLRAKIDD 184 Query: 204 AAGGKNYIETVWGRGYVL 221 K I TV G GY L Sbjct: 185 PFEPK-LIHTVRGMGYTL 201 >gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] Length = 234 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 128/232 (55%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VARTIRKTS-NVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121 Query: 121 GHAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q+ I V GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 122 AETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ +A YI T G GY ++ N Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDAPSRPEYILTRRGVGYFIKGN 233 >gi|327192961|gb|EGE59877.1| two component transcriptional regulator, winged helix family [Rhizobium etli CNPAF512] Length = 223 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED+K LA ++ L T D +EL + +DAI+LD L D G Sbjct: 1 MRILLIEDEKELAEALSAALGKHGIVTDHTAHLADAVELTRQNLYDAILLDRRLPDGEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR TP+ +L+ + +++V GL GADDY+ KPF EEL+AR+RA++RR Sbjct: 61 RFIPELRRTGRDTPIIVLTARNEPKERVEGLDLGADDYLGKPFLVEELMARLRAVLRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ I G + ++ +V V + L +E ++ L+ RK T+ + +Y+ Sbjct: 121 NLAELKITAGRMVIDPLHLSVTVDDAPLDLPRRELLVLAALAKRKEKTVLRATLEAAVYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E + +D I +LR++L+ AG + I + G GY+LRE Sbjct: 181 YEEEIQSNALDAHISRLRRRLAE-AGAEVSIHNIRGVGYLLRE 222 >gi|218508571|ref|ZP_03506449.1| probable two-component response regulator protein [Rhizobium etli Brasil 5] Length = 216 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 110/202 (54%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ ALA + +L+ V V G + FD +ILDL L ++ G Sbjct: 1 MRILLTEDNIALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVILDLNLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R + V IL+ + E++V+GL GADDY+ KPF+ E AR+R ++RR Sbjct: 61 DVLRAMRARQNQAAVLILTARGAPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G +S +L+++T + + +E ++E+L +R + KE + L Sbjct: 121 GLRSATVGFGGISFDLNSRTFSAGSTPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLS 202 D+ I+ ++ +LRK+LS Sbjct: 181 FDDDISANAIEQYVSRLRKRLS 202 >gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDD+ + L LK ++ V+ G +GI + + ++LD+ L + G+E Sbjct: 4 KVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + +R+ P+ LS I DKV+GL +GADDY++KPF+ EL ARI+A +RRS Sbjct: 64 ICQKIRMLS-EAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKM 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R + + G+L ++LD+ V +G+++ L KE Q++ LL KN + E + Sbjct: 123 NANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYD 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++K + V I LR+K+ I+TV G GY Sbjct: 183 QIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGY 225 >gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 229 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK +A +E+ +++E + G + + +L + +ILD+ + + G Sbjct: 1 MKILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTESDIGLMILDIMMPGMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ ILS + DK++GL SGADDY++KPFN E++AR+++++RR+ Sbjct: 61 IEVIKEVR-KDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H + ++ G L++N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 120 EEHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224 >gi|166033144|ref|ZP_02235973.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC 27755] gi|166027501|gb|EDR46258.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC 27755] Length = 260 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 126/231 (54%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A IEL LK++ +NV G++ ++ + D ILD+ L D+ GF Sbjct: 32 MNILVVDDEKEIADVIELYLKNDQYNVLKFYTGQEALDCIASTKIDLAILDIMLPDVDGF 91 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R K + PV +L+ + DK+ GL GADDYI KPFN ELVAR++A +RR Sbjct: 92 QILKQIR-EKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQIRRYT 150 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEM 173 + + GD+ ++ + Q H + LT E+ ++ LL + ++ E Sbjct: 151 QYNEGTKDEGDV-IDFGGLFLNRQSHECTYNEVPLTLTPIEFDILWLLCENRGKVISSEE 209 Query: 174 FLNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + + V I LR+K++ G ++I+TVWG GY + E Sbjct: 210 LFHKVWKEECYKNSNNTVMVHIRHLREKMNGPTGKSDFIKTVWGVGYKVEE 260 >gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 233 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D++ + ++ L+ E++ V GE+ I+L K F IILDL L + G Sbjct: 5 FKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGE 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV +R + + P+ +L+ EDK+ GL GADDY++KPF+ ELVAR++A++RR+ Sbjct: 65 EVCSKIRESS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAY 123 Query: 120 RGH---AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RG A+ LI+ GDL V++ V G + LT E++++ L T+E + Sbjct: 124 RGKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLV 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 184 EQAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 227 >gi|148555862|ref|YP_001263444.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501052|gb|ABQ69306.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 226 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 118/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + +LL+EDD AL +E L+ +V V G +E FDA+ILDL L + G Sbjct: 3 LNLLLVEDDAALVAMLERDLREMGHHVSVAMDGRSAVEAVTRDRFDAMILDLMLPTVDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R + PV ILS + +KV GL +GADDY+ KP EL AR+ AI+R R Sbjct: 63 SVLQRIRQDGMGLPVIILSALGRPVEKVEGLDAGADDYVVKPVTAAELNARLNAILRGRR 122 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 AQ + GD+ V+ G + L+ E+ ++ L ++ +T+ M L + Sbjct: 123 QPAQDGDTLRAGDIVVSPARFRAWRDGKAVDLSKIEFNLLLELVRNVDSIVTRAMLLEKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + EP ++DV I +LR KL+ A GG + I TV G GY+L Sbjct: 183 WGYDFEPATNLVDVHIRRLRAKLT-ANGGGDPISTVRGVGYLL 224 >gi|32487234|emb|CAD91201.1| putative response regulator [Nonomuraea sp. ATCC 39727] Length = 217 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED LA S+ +L+ E V V+ G+D E ++D ++LD + + G Sbjct: 1 MRVLVVEDQVDLADSVARVLRREGMAVDVSHDGDDAQERLSVIDYDVVVLDRDIPGVHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + V T V +L+ + D+V GL GADDY+ KPF ELVARIRA+ RR+ Sbjct: 61 ELCAEIAVDDRRTRVLMLTASGTTADRVAGLSLGADDYLPKPFAFAELVARIRALGRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++V GDL ++ + G R+ LT KE ++E L + ++ E L ++D Sbjct: 121 PPAPPILVHGDLRLDPAQRVAIRGGMRLPLTTKELAVLEHLLTARGRVVSAEELLERVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +P + I +LR KL G IETV GY Sbjct: 181 EQADPFTTTVKATINRLRSKL----GQPPVIETVPREGY 215 >gi|311109658|ref|YP_003982511.1| transcriptional regulator TctD 4 [Achromobacter xylosoxidans A8] gi|310764347|gb|ADP19796.1| transcriptional regulatory protein TctD 4 [Achromobacter xylosoxidans A8] Length = 225 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MRILLIED+ LA + L +V + +DG+ EFDA+ILDLGL + Sbjct: 1 MRILLIEDEAELARWLSRSLARHAG--FVVEWADDGLVAERRLAMEEFDAVILDLGLPGM 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L +R TPV +L+ S+ +K+ L GADD++ KPF EEL AR+ A++R Sbjct: 59 DGHALLAKIRARDDRTPVLVLTARDSLAEKIGTLHQGADDFLPKPFVVEELEARLIALIR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG + G+L A+ V G + L+ +E+ ++ +L + + K+ L+ Sbjct: 119 RSRGREHPRLTLGNLVFETSAQKFTVNGQPLQLSPREHSVLRVLIQKSGEPINKQQILDR 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + ++ I+V + +LRKKL++ I T+ G GY L EN D Sbjct: 179 ILTDDADINLEAIEVVVHRLRKKLADTG---VQIVTMRGMGYCL-ENLVD 224 >gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 235 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++++ +++ LK + F+V V G ++ + + D ++LD+ + + G Sbjct: 11 RVLVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIMMPGMDGLG 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ LR I P L+ S+EDKV GL G DDY++KPF+ EE+VARI ++RRS G Sbjct: 71 LLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRS-G 129 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q +T DL ++ + V G + L+ E+ ++ + L+K L+H Sbjct: 130 FGQKEEITRLKFADLELDDETHEVWKAGELVSLSPTEFTLLRYFMVNAGVVLSKPRILDH 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ +V +++ ++ LR+K+ G I T+ G GYVLRE Sbjct: 190 VWHYDFGGDVNVVESYVSYLRRKVDT--GEPRLIHTLRGVGYVLRE 233 >gi|187777705|ref|ZP_02994178.1| hypothetical protein CLOSPO_01297 [Clostridium sporogenes ATCC 15579] gi|187774633|gb|EDU38435.1| hypothetical protein CLOSPO_01297 [Clostridium sporogenes ATCC 15579] Length = 227 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++L++ED+ ++ + L+++ + L +D + + + D I+LD+ L D GF Sbjct: 3 FKVLIVEDEVSINDILVSALRADGYTAKGVFLAKDAQDALEIFHPDLILLDINLPDENGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+ R + K P+ +L+ + I DKV GL+ GADDYI+KPFN +E++ R++ +RR Sbjct: 63 ELCRYIN-NKYCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVN 121 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + + + VNL+ + V + L +EY+++E +N ++E+ L Sbjct: 122 KYKEKSEEEFIYINKFVKVNLEGRIVFKDDEEVKLKPQEYELLEFFIKNRNIVFSREIIL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 N ++ E EV+ +DV + +LR KL + + I+TV+G GYV+R Sbjct: 182 NKVWGFDYEGEVRTVDVHVRRLRSKL-DKENATSIIDTVFGIGYVMR 227 >gi|70728820|ref|YP_258569.1| DNA-binding response regulator TctD [Pseudomonas fluorescens Pf-5] gi|68343119|gb|AAY90725.1| DNA-binding response regulator TctD [Pseudomonas fluorescens Pf-5] Length = 223 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA SI LKS V V G E+ ILD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESIAQALKSTGLTVDVLHDGVAADLALGSEEYAVAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+ +LD + + + LT +E ++E L R ++KE + ++ Sbjct: 121 LGGERQQRCGVLAYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQLASQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I++++ +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHAVAIVTFRGLGYLL 218 >gi|146339743|ref|YP_001204791.1| putative two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|148254517|ref|YP_001239102.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146192549|emb|CAL76554.1| putative Two-component transcriptional regulator; putative transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis [Bradyrhizobium sp. ORS278] gi|146406690|gb|ABQ35196.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 234 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 130/230 (56%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L+IEDD+ S + ++K+ +V DL GE+G+ + + ++D +++D L Sbjct: 9 MRLLIIEDDR---ESADYLVKAFREVGHVADLAGDGEEGLAMAESGDYDVLVVDRMLPKR 65 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ ALR TPV ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + R Sbjct: 66 DGLSLIGALRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSR 125 Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R G A ++ GDL ++ + V + L +E++++E L +T+ M L Sbjct: 126 RHGGPAEETTYKVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLE 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++D +P+ +IDV I +LR K+ + + T+ G GY++R+ + Sbjct: 186 NVWDYHFDPQTNVIDVHISRLRSKIDKGF-DRPLLHTIRGAGYMIRDGLR 234 >gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis Bt407] gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis Bt407] gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 243 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 77 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + +N+ ++TV + G ++LT EY ++ L++ +N T E Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I +LR K+ +I+ VWG GY Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 239 >gi|199599197|ref|ZP_03212599.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258507151|ref|YP_003169902.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258538344|ref|YP_003172843.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199589878|gb|EDY97982.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257147078|emb|CAR86051.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150020|emb|CAR88992.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259648521|dbj|BAI40683.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 224 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 121/219 (55%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++EDD+ I +L+ + V + +L + +FD ++ D+ + + G+ Sbjct: 2 VKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDGY 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR S P+ ++ I K +G SG DDY+ KP N EL+ RI+A++RR++ Sbjct: 62 QFAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRAK 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +L++ G+L++N +A T +V + +T +E+Q++ L + ++ +N +D Sbjct: 122 ITADNLLIVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFWD 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ +DV+I KLR+K A G I+T+ G GY Sbjct: 182 LASDTSMRAVDVYITKLREKFKAADGFT--IKTIHGLGY 218 >gi|293605203|ref|ZP_06687591.1| response regulator [Achromobacter piechaudii ATCC 43553] gi|292816388|gb|EFF75481.1| response regulator [Achromobacter piechaudii ATCC 43553] Length = 233 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 + LL+EDD L+ I L+ FNV G+ +E + ++ ILDL L G + Sbjct: 3 KALLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFRRHDPAITILDLMLPGRDGLQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 V R LR A S P+ +L+ D++ GL+SGADDY+ KP L+ARIRA++RR ++ Sbjct: 63 VCRDLR-AFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHNK 121 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 G Q+ + G LS++ ++V G + LT E++M+ L+ + LT++ LN + Sbjct: 122 GQEQADQLEFGPLSIDRHTRSVRHAGVEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVR 181 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++G D + +DV + KLR+KL + I+T+WG+GY+ A Sbjct: 182 GIEFNGLD----RSVDVCVSKLRRKLDDDPRDPARIKTIWGKGYLFSPKA 227 >gi|167578493|ref|ZP_02371367.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] Length = 220 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +E LK E F V G+ + + ++LDLGL D G Sbjct: 1 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR + PV +++ ++ D++ GL GADDY+ KPF EEL+ARIRA+ RR Sbjct: 61 AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+++ G L ++ V G + L+ KE+ ++ L +++E F LY Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E + V I LRKKL G + I TV G GY + + A Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 220 >gi|160947486|ref|ZP_02094653.1| hypothetical protein PEPMIC_01420 [Parvimonas micra ATCC 33270] gi|158446620|gb|EDP23615.1| hypothetical protein PEPMIC_01420 [Parvimonas micra ATCC 33270] Length = 216 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 120/214 (56%), Gaps = 3/214 (1%) Query: 12 LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71 +A ++ +LK E ++V + G+ + + +D +LD+ + ++ GFEV R R I Sbjct: 1 MARALVELLKQEKYDVDHMEDGDSALMALESGIYDIAVLDVMMPEMNGFEVARRARKNGI 60 Query: 72 STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD 131 TP+ +L+ S ++DKV GL SGADDY++KPF +EL+ARIRA+ RRS + ++ GD Sbjct: 61 KTPILMLTAKSQLDDKVEGLDSGADDYLTKPFQTKELLARIRALGRRSSSFQEDILNYGD 120 Query: 132 LSVNLDAKTV--EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189 L+++ + + G + L+ KE +++E + +T+E ++ E E Sbjct: 121 LTIDKTTAMLNCDTTGQNVRLSEKELRILEYMFNNNGQIMTREQLAVKIWGFESETEYNN 180 Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++V++ RKKL+ G I+ V G GY LRE Sbjct: 181 VEVYMSFTRKKLT-FVGSNVEIKAVRGLGYELRE 213 >gi|156740374|ref|YP_001430503.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231702|gb|ABU56485.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 17/228 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ + + + LK++ F V+ GE + L + + D I+LDL L + G E+ Sbjct: 5 ILVVEDEEPILNLVVAYLKADGFAVHTARDGESALMLAQTLQPDLIVLDLLLPGMDGLEI 64 Query: 63 LRALRVAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R R+ + P V +L+ + DKV GL GADDY++KPF+ ELVAR++AI+RR R Sbjct: 65 CR--RLQRDGGPYVLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRRH 122 Query: 121 ----GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A+S ++T DL +++ + V+ +G + LT +E+ ++ L+ T+E L Sbjct: 123 TSVASPAESALLTFRDLQIDVARREVQRRGVPVTLTAREFDLLYTLAAMPGRVFTREQLL 182 Query: 176 ----NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 H +DG D +++DV I LR+KL + I+TV G GY Sbjct: 183 ERVWGHDFDGVD----RVVDVHISLLRRKLEDDPTEPTLIQTVRGVGY 226 >gi|320325554|gb|EFW81616.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. glycinea str. B076] gi|320327160|gb|EFW83174.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. glycinea str. race 4] gi|330879271|gb|EGH13420.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. glycinea str. race 4] Length = 223 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G E+ ILD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALSSEEYAVAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+ +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGEWQQRCGVLAYDLDTRRFTLGEELLALTSREQAVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I++++ +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVAIVTFRGLGYLL 218 >gi|228475679|ref|ZP_04060397.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|228270461|gb|EEK11896.1| transcriptional regulatory protein [Staphylococcus hominis SK119] Length = 233 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 8/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++D+K +A +E LK E + V+ G D ++L E D ++LD+ L G E Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYA 122 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D+ + +A +++ +G I LT +E+++ LS +T+E Sbjct: 123 QPAQESEGTTNEIAIKDIVIYPEAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY L+++ Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >gi|229819772|ref|YP_002881298.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565685|gb|ACQ79536.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 242 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 119/232 (51%), Gaps = 17/232 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ +A SI +E + V + G G+E K Y D I+LD+ L I G E Sbjct: 11 RVLVVEDEPDIATSIARRFTAEGWTVEIASDGLAGVEAAKRYAPDVIVLDVMLPGIDGLE 70 Query: 62 VLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 V R ++ + P+ +L+ D + GL GADDY++KPF+ EL+AR++A++RR Sbjct: 71 VCRRIQAEDPRAVPILMLTARDDETDLLVGLGVGADDYMTKPFSMRELLARVKALLRRHE 130 Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + A+ + GDL ++ + V G HLT E+ ++ L+ T L Sbjct: 131 RVSRLAAVPADPRAEPPLELGDLVIDRAQRRVHRAGTEAHLTPTEFDLLVCLASSPRTVL 190 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 T+E L ++D D + +D + LR+KL G + I TV G GY L Sbjct: 191 TREQLLEEVWDWVDASGTRTVDSHVKALRRKL-----GADLIRTVHGVGYSL 237 >gi|163736175|ref|ZP_02143594.1| two-component response regulator [Phaeobacter gallaeciensis BS107] gi|161390045|gb|EDQ14395.1| two-component response regulator [Phaeobacter gallaeciensis BS107] Length = 221 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 119/220 (54%), Gaps = 4/220 (1%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 ++EDD + L + V + G + + ++D ++ D D+ G L+ Sbjct: 1 MLEDDPEIGTWTVKGLTAAGHVVDWIENGREALLAATTRDYDVLVFDRMTPDLDGLSALK 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA- 123 LR A+I+TP+ +L+ + ++ED+V GL++GADDY+SKPF EL+ARI A+ RR R A Sbjct: 61 TLRSARITTPLILLTALGAVEDRVEGLEAGADDYLSKPFAMTELLARITALGRRGRAEAA 120 Query: 124 --QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + L ++L ++T G + L KE++++E+L K T+ M L ++D Sbjct: 121 ETATRLSHRGLDLDLLSQTCACNGTTVLLNPKEFRLLEVLMRSKGRIQTRAMLLERVWDI 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P +++ + +LR K+ G +I+TV G GY+ Sbjct: 181 NFDPSTSVVETHMSRLRNKIEKPF-GLEFIKTVRGSGYMF 219 >gi|89255956|ref|YP_513318.1| two-component response regulator [Francisella tularensis subsp. holarctica LVS] gi|115314439|ref|YP_763162.1| two-component response regulator [Francisella tularensis subsp. holarctica OSU18] gi|156501952|ref|YP_001428017.1| two-component response regulator [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954599|ref|ZP_06559220.1| two-component response regulator [Francisella tularensis subsp. holarctica URFT1] gi|295311942|ref|ZP_06802766.1| two-component response regulator [Francisella tularensis subsp. holarctica URFT1] gi|89143787|emb|CAJ78992.1| Two-component response regulator [Francisella tularensis subsp. holarctica LVS] gi|115129338|gb|ABI82525.1| two-component response regulator [Francisella tularensis subsp. holarctica OSU18] gi|156252555|gb|ABU61061.1| Two-component response regulator [Francisella tularensis subsp. holarctica FTNF002-00] Length = 228 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L + L+ E V + GE + +D ++LD+G+ G Sbjct: 1 MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 EVLR +R I P+ +L+ +ED+++GL GADDY++KPF +ELVARI+AI R Sbjct: 61 EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RS I GD S N ++TV G I ++ KE ++ +L + K L Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y E + ++V + LRKK++ N+I+T+ G GY ++++ Sbjct: 181 EIYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYFVQKD 224 >gi|146295477|ref|YP_001179248.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409053|gb|ABP66057.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 221 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 8/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED + L I LK+E F V + + L K E D IILD+ L D+ G+EV Sbjct: 4 ILVVEDQQDLNQIITRFLKNEGFEVINSYTAKGA--LSKLNEADLIILDIMLPDMEGYEV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +K P IL+ S DK++G + GA+DYI+KPF+ EL+AR++ ++RRS+ Sbjct: 62 LK--EASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRSKNF 119 Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +S+ ++ G + + V V G ++LT KE++++ L+ K+ +++ L ++ Sbjct: 120 EESIKLLDGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +DV I +LR+KL + K I+TVWG GY L E+ Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSED 219 >gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] Length = 232 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +D+ +A IE+ L+ E ++V GE+ I + + D +ILD+ + + G+ Sbjct: 4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKMDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R K P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 64 EVTRQIR-TKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++S + G + +N + +TV+V G +I LT KE+ ++ LL+ E Sbjct: 123 TLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ + V I LRKKL I+TVWG GY Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 236 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+K +A ++ + E + V G++ + + K D I+LD+ L G + Sbjct: 3 KLLVVDDEKPIADILKFTFEKEGYQVVCAYDGDEALVVVKDERPDLILLDVMLPGRDGMD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR+R Sbjct: 63 VCRTVR-QTYDVPIIMLTAKDSELDKVLGLELGADDYVTKPFSTRELVARVKAHLRRNRS 121 Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +Q ++ +L ++L++ TVE G + LT +E++++ L+ + LT+E L Sbjct: 122 KVEEKDSQHVLRVHELEIDLNSYTVEKVGEALELTHREFELLVYLARHQGQVLTREHLLQ 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV I +LR+K+ + YI T G GY LR Sbjct: 182 SVWGFDYFGDVRTVDVTIRRLREKIEDDPSQPKYIITRRGLGYTLR 227 >gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB [Magnetospirillum gryphiswaldense MSR-1] Length = 233 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ ALA + L+ E + V GE+ + L + D ++LD L + G EV Sbjct: 7 ILIVEDEAALATMLRYNLEKEGYRVCEAGDGEEALTLVSERKPDLMVLDWMLPSLSGIEV 66 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR A P+ +L+ DK+RGL +GADDY++KPF+ EL+ARIRA++RR + Sbjct: 67 CRQLRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAMLRRVQ 126 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q ++ GD++++L A V +HL E+++++ ++E LN ++ Sbjct: 127 PVPQKGMLEYGDIAMDLAAHRVTRGDRPVHLGPTEFRLLQFFMQHPGNVFSREELLNAVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L N + I TV GY L Sbjct: 187 GPDIYVEPRTVDVHIRRLRKAL-NGDNDADIIRTVRAAGYAL 227 >gi|237799359|ref|ZP_04587820.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|237805509|ref|ZP_04592213.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806273|ref|ZP_04592977.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022215|gb|EGI02272.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331026616|gb|EGI06671.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027387|gb|EGI07442.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 229 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD ++ L + V T G DG+ L +D I+LD+ L I G+ Sbjct: 1 MHILLIEDDTKTGEYLKKGLGESGYRVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A+ PV L+ ++D++RGL+ GADDY+ KPF+ EL+ RIR I+RR Sbjct: 61 QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++L + V Q I LT KE+ ++ LL R+ +++ + ++D Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVMSRAQIASEVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++DV I +LR K+ K I TV G GYV Sbjct: 180 MNFDSDTNVVDVAIKRLRSKIDLPYPVK-LIHTVRGIGYV 218 >gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 224 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E K+ E D +ILD+ L D G Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--KWSEGPDVLILDVMLPDTDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 119 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G + LT +E+ + +L ++ L Sbjct: 120 KKKEVTVSHEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL ++ YI+T++G GY L Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGSSG---EYIKTIYGVGYKL 222 >gi|110644669|ref|YP_672399.1| DNA-binding response regulator [Escherichia coli 536] gi|23954247|emb|CAD42044.1| hypothetical protein [Escherichia coli] gi|110346261|gb|ABG72498.1| DNA-binding response regulator [Escherichia coli 536] Length = 239 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 6 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 66 ICRYIRQMTSYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ LI L +N ++ V + ++ LT +E+ ++ + ++ L Sbjct: 126 MGQNILLASGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + E ++ I +LR K+ A I+TVWG+GY Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 229 >gi|332184581|gb|AEE26835.1| DNA-binding response regulator [Francisella cf. novicida 3523] Length = 228 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L + L+ E V + GE + +D I+LD+G+ G Sbjct: 1 MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIIVLDIGMPIKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 EVLR +R I P+ +L+ +ED+++GL GADDY++KPF +ELVARI+AI R Sbjct: 61 EVLRNVRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RS I GD S N ++TV G I ++ KE ++ +L + K L Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y E + ++V + LRKK++ N+I+T+ G GY ++++ Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYFVQKD 224 >gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family [Bacillus pseudofirmus OF4] Length = 229 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 133/233 (57%), Gaps = 20/233 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 +RIL++ED+ + ++L L+ E YV D GIE + E + ++LD+ + ++ Sbjct: 4 IRILIVEDEAPMRELLQLYLRKEG---YVVDEAITGIEALEKVEKTLYSVVLLDVMMPEM 60 Query: 58 PGFEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 GFEV R +R K+S PV +L+ + DKV+GL+ GADDY++KPF +EEL+AR+ A++ Sbjct: 61 DGFEVCREIR--KVSQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAVL 118 Query: 117 RR-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 RR SRG+ +L G L + +A V + LT KE+ ++EL L KN Sbjct: 119 RRYGVSEPESRGN--TLFFKG-LVMKRNAYQVYYNEEELSLTPKEFAILELFLLNKNRVF 175 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVL 221 +++ L ++ + + +D + LR KL+ A G++ I+TVWG GY L Sbjct: 176 SRDDILELVWGYDFIGDYRGVDTHVKHLRDKLTEAGISGRSVIKTVWGVGYKL 228 >gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS] gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS] Length = 233 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 128/229 (55%), Gaps = 6/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A+A + +KS + G + + + D ++LD L D+ G + Sbjct: 8 ILVVEDEPAIAELVAFSVKSAGWMPVTVYSGTEAWTALQRFRPDVVLLDWMLPDLSGMRL 67 Query: 63 LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 L +R + + PV +L+ + EDKV GL GADDYI+KPF+ +ELVARI A++RR + Sbjct: 68 LSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKA 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+SL+ G ++++ ++ V++ I + E+++++ L + ++ L+ ++ Sbjct: 128 PERAKSLLRAGAVTLDPESCQVKIGNGEIEMGHSEFRLLKFLMANPDRVFSRGQLLDKVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + + E + +DV I +LRK L G +N I TV G GY+L E K E Sbjct: 188 SNQLDIEERTVDVHILRLRKALK---GQENLIRTVRGMGYMLSEKDKSE 233 >gi|167033576|ref|YP_001668807.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166860064|gb|ABY98471.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 230 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 21/232 (9%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++DD+ L + L L E F D GE+G + ++LD+ L I G EV Sbjct: 4 VLLVDDDRELTEMLSLYLAREGFQATAVDTGEEGEAQALSGNYQVVVLDVMLPGISGIEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR +R A+ PV +L+ D++ GL+ GADDY+ KP + ELVAR+RAI+RR Sbjct: 64 LRRVR-ARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRRVQPQ 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFL 175 A + TG L + + + LTG E+ ++E L+ + ++K+ + L Sbjct: 123 QMGEASAPEQLRTGALKMWPGRREAHWGDATLELTGSEFSLLEALARQAGQLVSKQDLSL 182 Query: 176 NHL------YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N L YD R IDV + +R+KL A G ++I++V G GY+L Sbjct: 183 NALGRPLTRYDRR-------IDVHVSSIRQKLGPRADGSSWIQSVRGMGYML 227 >gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens DSM 7] gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens TA208] gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 227 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 9/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ ++ E+ E F G +G + ++D +ILD+ L + G Sbjct: 1 MKILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R S P+ +L+ + D+V G + GADDY++KPF+ LVARI+A++RR R Sbjct: 61 TICRKIRETS-SVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYR 119 Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ LI T S+N + V + G + +LT KE+ ++ L ++E Sbjct: 120 ATGQAVKSDDLIETACFSINKKTREVFLHGKSVENLTPKEFDLLFYLVQNPRQVFSREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ + + + +DV I +LRKKLS+ K ++ TVWG GY E+ Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLSSDE--KPFLYTVWGVGYKFDED 227 >gi|300697997|ref|YP_003748658.1| DNA-binding response regulator in two-component system [Ralstonia solanacearum CFBP2957] gi|299074721|emb|CBJ54279.1| DNA-binding response regulator in two-component system [Ralstonia solanacearum CFBP2957] Length = 232 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ + L++E + V + G +G++L + E ++LDL L I G Sbjct: 7 MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGISGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR + P+ +L+ ++ I+D+V GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 67 ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 126 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V DL ++ + V G I LT KE +ELL ++E L+++ Sbjct: 127 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++P I+DV++ +LR K+ + ++TV G GY L Sbjct: 187 WGANEDPLTNIVDVYVRRLRSKI-DEGHPVPLLKTVRGLGYRL 228 >gi|299133554|ref|ZP_07026748.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298591390|gb|EFI51591.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 239 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 124/227 (54%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + GE+G+ L + ++D +++D L G Sbjct: 14 MRLLIIEDDRESAEYLAKAFREVGHVAELAGDGEEGLALAQSGDYDVLVVDRMLPKRDGL 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR +TP ILS + ++D+++GL++G DDY+ KP++ EL+AR+ + RR Sbjct: 74 SVIGTLREKGDTTPALILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 133 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + ++ GDL ++ + V I L +E++++E L +T+ M L +++ Sbjct: 134 GPSEETSYRVGDLELDRLSHQVRRGTTEITLQPREFRLLEYLMKHAGQVVTRTMLLENVW 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ + + T+ G GY++R+ + Sbjct: 194 DYHFDPQTNVIDVHISRLRSKIDKGQ-ERPLLHTIRGAGYMIRDGLR 239 >gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 236 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I L+ E + V G+ +E + D I+LD+ L + G E Sbjct: 5 KILVVDDEQYIVELIRFNLEKEGYTVITAGDGKIALEQTFREKPDLIVLDIMLPGVDGLE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ K + P+ +L+ DKV GL+ GADDY++KPF+ ELVARI+A +RR+ Sbjct: 65 VCRTLQRDKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKARLRRN 124 Query: 120 RGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 QS ++ G L ++++ +V + G ++ T KE+++++LL+ T+E Sbjct: 125 FKAQQSDNQEKENILAIGGLKIDIEKFSVYLNGQKVDFTPKEFELLKLLASNPGKVFTRE 184 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ + + +DV I +RKK+ G K ++ETV G GY RE A Sbjct: 185 YLLEKIWGYDFAGDTRTVDVHIRHIRKKIEPEQGEK-FVETVRGVGYKFREMA 236 >gi|294638408|ref|ZP_06716644.1| transcriptional activator protein Irlr [Edwardsiella tarda ATCC 23685] gi|291088473|gb|EFE21034.1| transcriptional activator protein Irlr [Edwardsiella tarda ATCC 23685] Length = 187 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 104/181 (57%), Gaps = 1/181 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F V +TD G G L +D IILD+ L D+ G+ Sbjct: 1 MKILIVEDEVKTGKYLSKGLTEAGFVVDLTDNGLTGYHLAMTAGYDLIILDILLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V+R LR A P+ +LS + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DVVRMLRNANQGVPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + DL+++L ++ V G R+ LTGKE+ ++E + L + + + ++ Sbjct: 121 SHIPERQFQVADLTLDLLSRKVTRSGKRLTLTGKEFTLLEFFIRHQGEVLPRSLIASQVW 180 Query: 180 D 180 D Sbjct: 181 D 181 >gi|300775304|ref|ZP_07085166.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300506044|gb|EFK37180.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 223 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 128/223 (57%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ L +++ L++E+F V + G+E YE+D I+LD+ L D G Sbjct: 1 MKILIIEDEPELKDTVQNFLEAEHFIVEYAENYSAGLEKIISYEYDCILLDIMLPDGNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ ++ PV ILS S++DKV GL+ GADDY++KPF+ EL+ARI++++RR Sbjct: 61 DLLKEIKKMHKKDPVIILSAKDSVDDKVAGLEIGADDYLAKPFHLAELLARIKSVIRRKN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 +++I ++S++ +++ V+V + L KEY ++ + TL K ++ Sbjct: 121 QDGENIIRYKNISIDPESRIVKVGNGELILNRKEYDLLYYFVIHPEKTLQKTTLAEAIWG 180 Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D D+ + + I I LRKKL ++ + V+G GY L Sbjct: 181 DYIDQADSLDFIYSQIKNLRKKLKTLHAEADF-QAVYGIGYKL 222 >gi|239817851|ref|YP_002946761.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239804428|gb|ACS21495.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 249 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLI+DD+ LA + + + +G+ + FDA ILD+ L ++ GF Sbjct: 20 RILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGPFDAAILDVMLPEMDGFA 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ +L+ + D+V GL+ GADDY+ KPF ELVAR++ I+RR R Sbjct: 80 LCREIR-KESDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRRQRS 138 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G+ V LS++LD + V G R+ LTG E++++ LL+ +++ Sbjct: 139 TPAAANGNGTQHRVFDGLSIDLDRRQVLRHGERVELTGTEFELLALLAAEPGKVFSRDDI 198 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN L E + +D+ + +LRKKL + I+T+ GY L Sbjct: 199 LNRLRGHEAELYTRAVDIVVSRLRKKLEPL----DCIKTLRNAGYAL 241 >gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus flavithermus WK1] gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus flavithermus WK1] Length = 223 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + L L+ E F D GE G+ + D I+LD+ + + G+ Sbjct: 4 ILIVDDEKEMRELLRLYLEPEGFTCIEADDGEAGLAEFGRKQIDLILLDIMMPKLDGYRF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R + P+ L+ S D+V GLQ GADDYI KPF+ E+VAR+ A++RR++G Sbjct: 64 CMHVR-ERSQVPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVLRRTKGT 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G + ++ A+ V+V G + LT KE++++ L + T+E L+ ++ Sbjct: 123 DVTTSYEAGPIVIDEKARKVKVNGKPVVLTLKEFELLTLFVKHRGQVFTREQLLDRVWGI 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +D I LR KL A YI+TVWG GY E Sbjct: 183 HYVGSTRTVDTHIKTLRIKLGEAG---QYIQTVWGVGYKFDET 222 >gi|226944540|ref|YP_002799613.1| Response regulator KdpE [Azotobacter vinelandii DJ] gi|226719467|gb|ACO78638.1| Response regulator KdpE [Azotobacter vinelandii DJ] Length = 232 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 120/226 (53%), Gaps = 3/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ + + + L + + V G +G+ L D ++LDLGL D+ G E+ Sbjct: 8 ILVIDDEAQIRKFLRISLVAHGYRVLEAGCGREGLTLAAEARPDLLVLDLGLPDMDGKEL 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 L LR PV +LS + +KV L GA+DY++KPF+ EL+AR+R ++RR S Sbjct: 68 LAELR-RDSQVPVLVLSVRAGDGEKVLALDGGANDYVTKPFSIRELLARVRVLLRRPASP 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G L+V+LD + V++ G I LT KEY ++ +L+ +T++ L ++ Sbjct: 127 GQGPGTLNCGPLAVDLDNRRVDLDGREIALTRKEYDVLAMLARHPGRIVTQQQLLRDIWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + V + LR+KL + +I T G GY LRE A Sbjct: 187 PTHVEDSHYLRVVVGHLRQKLGDDPADPRFIVTEAGIGYRLREQAP 232 >gi|308234693|ref|ZP_07665430.1| response regulator receiver domain protein [Gardnerella vaginalis ATCC 14018] Length = 246 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F+V G + I++ + D I++D+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R ++ PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 69 TRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQDP 128 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ DL +N D+ V G I L+ EY+++ L + L+K LNH++ Sbjct: 129 DEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLR 222 + I++ +I LRKK+ N G IET G GY++R Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMIR 239 >gi|296531946|ref|ZP_06894739.1| response regulator [Roseomonas cervicalis ATCC 49957] gi|296267727|gb|EFH13559.1| response regulator [Roseomonas cervicalis ATCC 49957] Length = 258 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + L+ ++ V + L + ++LDL L G + Sbjct: 11 ILVVDDDREIRDLLSKFLERQSCRVTAARDAREARRLWPLGRYHLVVLDLMLPGESGLDF 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR ++ P+ +L+ MS D++ GL+ GADDY++KPFN EL+ARIRA++RR+ G Sbjct: 71 ARWLR-SQSDVPIVMLTAMSEETDRIVGLELGADDYVAKPFNPRELLARIRAVLRRAHGE 129 Query: 123 --------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A+S+ G + + + + G + LTG EY+++ +L R N LT++M Sbjct: 130 GTTSQEPPAKSIRFAGWVLEPARRRLMNLDGVEVPLTGGEYELLMVLVERPNRVLTRDML 189 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ L + P + IDV + +LR+KL + I+TV G GYVL Sbjct: 190 MDLLRGRQAGPFDRAIDVAVSRLRRKLEDDGRNPTLIKTVRGGGYVL 236 >gi|190893427|ref|YP_001979969.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190698706|gb|ACE92791.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] Length = 225 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ ALA + +L+ V V G + FD +ILDL L ++ G Sbjct: 1 MRILLTEDNIALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVILDLNLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R + V IL+ + E++V+GL GADDY+ KPF+ E AR+R ++RR Sbjct: 61 DVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDISEFEARVRVLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G +S +L ++T + + +E ++E+L +R + KE + L Sbjct: 121 GLRSATVGFGGISFDLTSRTFSAGSTPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ I+ ++ +LRK+LS ++T G GY L Sbjct: 181 FDDDISSNAIEQYVSRLRKRLSPHG---LTVKTARGIGYYL 218 >gi|254302887|ref|ZP_04970245.1| OmpR family response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323079|gb|EDK88329.1| OmpR family response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 224 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDDK + + L L+ +N++V GE GIE+ +D ++LDL L G E Sbjct: 3 KILIIEDDKNIQRLLGLELRHKNYSVDSAYDGEQGIEIFSKNSYDVVLLDLMLPKKSGKE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120 V R LR P+ +++ S+ DKV L GA+DYI KPF EEL+ARIR + R + Sbjct: 63 VCRELRKLG-DAPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVVTRNKEN 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + ++ +++ AK V + I LT E+ ++E K + ++E + ++ Sbjct: 122 SNNKHFYIENEIKMDISAKKVFLNEVEISLTKTEFLILEYFMKNKGLSCSREKIIVGVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E KI+DV+I LRKK+ + NYI T+ G GY+ + Sbjct: 182 YDFDGEEKIVDVYINSLRKKIDPKS---NYIHTIRGFGYIFQ 220 >gi|24114327|ref|NP_708837.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a str. 301] gi|30064375|ref|NP_838546.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a str. 2457T] gi|24053488|gb|AAN44544.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 301] gi|30042632|gb|AAP18356.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 2457T] gi|281602412|gb|ADA75396.1| Two component transcriptional regulator, winged helix family precursor [Shigella flexneri 2002017] gi|313648139|gb|EFS12585.1| transcriptional regulatory protein qseB [Shigella flexneri 2a str. 2457T] gi|332998724|gb|EGK18320.1| transcriptional regulatory protein qseB [Shigella flexneri VA-6] gi|332999777|gb|EGK19361.1| transcriptional regulatory protein qseB [Shigella flexneri K-272] gi|333014732|gb|EGK34077.1| transcriptional regulatory protein qseB [Shigella flexneri K-304] gi|333015645|gb|EGK34984.1| transcriptional regulatory protein qseB [Shigella flexneri K-227] Length = 219 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV L+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGE 218 >gi|84515095|ref|ZP_01002458.1| Two component Transcriptional regulator, Winged helix family [Loktanella vestfoldensis SKA53] gi|84511254|gb|EAQ07708.1| Two component Transcriptional regulator, Winged helix family [Loktanella vestfoldensis SKA53] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 9/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ + ++E L+ V G+D + + DA+ILDL L G Sbjct: 1 MKVLLVEDNHDIGEAVERRLRMAGHVVTWNRTGDDVVAMLDHDPVDAVILDLMLPAADGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR +R + PV +++ + I+DKV L GADDY+ KPF+ E+ AR+RA+VRR Sbjct: 61 AILRQIRRQQRDLPVLVITARAEIDDKVSLLDLGADDYLVKPFDMREMEARLRALVRRPV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF---LNH 177 G S++ GDL ++ ++ V G I L +E+ ++E L + +T+E L+H Sbjct: 121 GQFTSVLQLGDLELDPASRIVRQAGQLIDLGRREFGLLEALMTQAGRVVTRERLMSRLSH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L DG E +++ + +LR+K+ A + T+ G GY+ R A +T Sbjct: 181 LDDGGSE---NALELLVSRLRRKI---AASNVEVVTMRGVGYMARVVADAQT 226 >gi|119776564|ref|YP_929304.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119769064|gb|ABM01635.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 228 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 127/223 (56%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++DD L+ ++ +L+ E F + + G +G+ FD I+LD+ L + GFEV Sbjct: 4 LLLVDDDPGLSELLKELLELEGFVLTLAHDGAEGLSKAVSSHFDLILLDVMLPKLNGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121 L+ LR K TPV +L+ D+V GL+ GADDY+ KPFN ELVARIRAI+RR++ G Sbjct: 64 LKQLRNHK-QTPVLMLTARGDDIDRVVGLEIGADDYLPKPFNDRELVARIRAILRRAQPG 122 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 QS I GDL ++ + I+LTG E+ ++ L+ + ++KE Sbjct: 123 TPQSQPPEEIQLGDLKLDPSRQEAWCAQSLINLTGTEFALLLQLASQAGELVSKETLSET 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + R P + +D+ + LRKKL + G+ ++T+ G+GY+ Sbjct: 183 VLGKRLMPFDRSLDMHLSNLRKKLPERSDGRPRVKTIRGKGYI 225 >gi|257865655|ref|ZP_05645308.1| response regulator [Enterococcus casseliflavus EC30] gi|257871990|ref|ZP_05651643.1| response regulator [Enterococcus casseliflavus EC10] gi|257799589|gb|EEV28641.1| response regulator [Enterococcus casseliflavus EC30] gi|257806154|gb|EEV34976.1| response regulator [Enterococcus casseliflavus EC10] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 124/224 (55%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 LLIEDD + +E++L+ E++N G + + L + D I+LDLGL DI G E+ Sbjct: 5 FLLIEDDSNIVDFMEVVLQREHYNFTSVGTGMETLMLLQEETIDFILLDLGLPDIDGMEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R +++TP+ ++S +DKV+ L GADDY++KPF+ EL ARIR +R Sbjct: 65 LKIIR-KRMNTPIIVISARKDEQDKVQALDLGADDYVTKPFSTNELFARIRTALRHKETA 123 Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A S ++V +L+++ + K + + IHLT EY+++ ++ +T + + ++ Sbjct: 124 AFSSSPILVNKELTIDFEKKILYKNQNEIHLTKNEYRIMAVMFKNLGKVVTYDTLTSEVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G + + + V I +RKK+ Y+ T G GY LRE Sbjct: 184 -GPFAADAQTLRVNISNIRKKIETNTLQPEYLITEIGVGYRLRE 226 >gi|284037378|ref|YP_003387308.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283816671|gb|ADB38509.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 244 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD +A I L + T+LG +G+EL FD ILDL L D GFE Sbjct: 3 RLLLIEDDPDVARLIHDHLHQLPGELTTTELGNEGLELLAMQPFDICILDLLLPDASGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R + P+ ILSG + DKV GL++GADDY++KPF+ EL+AR+RA++RRS Sbjct: 63 ICRRIRQRHPAVPLLILSGRAEERDKVTGLEAGADDYLTKPFSVPELLARLRALLRRSEL 122 Query: 121 ----GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 QS I+ G L + + A+ V V G RI LT KE+ ++ LL+ + +++ Sbjct: 123 TGVSKPIQSTILVYQHGALRIEVQARIVTVSGQRIELTPKEFDLLTLLASYPGKSFSRQK 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + I +LR K+ YI T WG GY Sbjct: 183 ILSLVWGYHHDGYEHTVTAHINRLRIKIEPDFTRPIYILTTWGIGY 228 >gi|170766034|ref|ZP_02900845.1| transcriptional regulatory protein QseB [Escherichia albertii TW07627] gi|170125180|gb|EDS94111.1| transcriptional regulatory protein QseB [Escherichia albertii TW07627] Length = 219 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTLPRMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWRNKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GLASNELRHGNVMLDPGKRIATLAGESLTLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGE 218 >gi|167616629|ref|ZP_02385260.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257143130|ref|ZP_05591392.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 220 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +E LK E F V G+ + + ++LDLGL D G Sbjct: 1 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR + PV +++ ++ D++ GL GADDY+ KPF EEL+ARIRA+ RR Sbjct: 61 AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+++ G L ++ V G + L+ KE+ ++ L +++E F LY Sbjct: 121 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E + V I LRKKL G + I TV G GY + + A Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 220 >gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DDK + I + LK E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + +N+ ++TV + G ++LT EY ++ L++ +N T E Sbjct: 125 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I +LR K+ +I+ VWG GY Sbjct: 185 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228 >gi|325272287|ref|ZP_08138697.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324102580|gb|EGC00017.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L IEDD I L S V D G +G+ +D I LD L ++ G Sbjct: 3 RVLTIEDDAVTGQEIVAELTSHGLEVEWADNGREGLAKAIAGGYDLITLDRMLPEVDGLT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 ++ LR KI+TP+ ++S +S ++++VRGL++G D ++KPF +E+ AR+ ++RR S Sbjct: 63 IVTTLRNLKIATPILMISALSDVDERVRGLRAGGDASLTKPFASDEMAARVEVLLRRNSV 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ + DL ++L + + ++L EY+++E L +T+ M ++ Sbjct: 123 PMTQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P +IDV I +LRKK+ ++ G I TV G GY + E Sbjct: 183 YHFDPGTNLIDVHIGRLRKKI-DSPGQSPLIRTVRGSGYAIAE 224 >gi|291008487|ref|ZP_06566460.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 227 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++ L +E +V V G + + L FD ++LD+ L + G+ Sbjct: 4 RVLVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIMLPGLSGYR 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR ++TPV +LS D+ GL GAD Y+ KPF+ LVA++RA++RR Sbjct: 64 VLERLRADDVATPVLLLSAKDGEVDQADGLDLGADGYLVKPFSFLVLVAQVRALLRRGEA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + G+L ++ ++ V G + L+ +EY ++ L+ R ++KE L ++ G Sbjct: 124 AGRGELRVGELLIDRGSREVRWAGTEVSLSPREYGLLVALAGRSGAVVSKEDLLRTVW-G 182 Query: 182 RDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D+ + +++V++ LR+KL+ AAG + ++TV G GY Sbjct: 183 EDQFVTRNVVEVYVGYLRRKLA-AAGAGHLVQTVRGHGY 220 >gi|260587288|ref|ZP_05853201.1| KDP operon transcriptional regulatory protein KdpE [Blautia hansenii DSM 20583] gi|331083607|ref|ZP_08332718.1| hypothetical protein HMPREF0992_01642 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542483|gb|EEX23052.1| KDP operon transcriptional regulatory protein KdpE [Blautia hansenii DSM 20583] gi|330403818|gb|EGG83370.1| hypothetical protein HMPREF0992_01642 [Lachnospiraceae bacterium 6_1_63FAA] Length = 231 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+++EDD A+ + I L++ + GE I + D I+LDLGL D+ G EV Sbjct: 6 IMVVEDDAAVRNLITTTLETHEYRFQEAATGETAILEVATHNPDVILLDLGLPDMDGIEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ +R TP+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IQKIRTWA-KTPIIVISARSEDIDKIEALDAGADDYLTKPFSVEELLARLRVTFRRLNDM 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S S+ GDL ++ A ++ +HLT EY+++ LLS LT Sbjct: 125 KSDMVQSSVFQNGDLKIDYAAGCAFMKNTELHLTPIEYKLLCLLSQNVGKVLTHTYITKE 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +V + VF+ LRKK+ YI+T G GY Sbjct: 185 IWGSAWDNDVASLRVFMATLRKKIEENPSEPKYIQTHVGVGY 226 >gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 257 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 15/231 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE +EL + D ++LD+ + + GF V Sbjct: 15 LLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASEQPDLVVLDVMMPKLDGFAV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 R LR A+ + P+ LS + +I +KV GL GADDY+SKPF+ +EL ARI I+ R R Sbjct: 75 CRRLR-AESAVPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRILGRVVGR 133 Query: 121 GHAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G A ++ GDL V+ + + V G RI LT E+ ++ELL + Sbjct: 134 GTASQDPREPVAGLGVLRLGDLVVDTNRRQVSRGGERISLTYTEFSLLELLFREPGRVVP 193 Query: 171 KEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 194 RAEILEQLWGYPPRRTADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 244 >gi|108761671|ref|YP_629606.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108465551|gb|ABF90736.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 232 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 4/221 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD ++ + + L+ E + V G G+ D ++LD+ L ++ GFEV Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 L+ LR TPV +LS DK+ GL GADDY+ KPF +EL+ARI+A++RR S Sbjct: 68 LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127 Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G VT GD+SV++ A+TV + LT +E++++ T T+E L+ Sbjct: 128 AGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSGA 187 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + +D F+ +LR K + TV G GY Sbjct: 188 WGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGY 228 >gi|325264454|ref|ZP_08131184.1| DNA-binding response regulator DltR [Clostridium sp. D5] gi|324030116|gb|EGB91401.1| DNA-binding response regulator DltR [Clostridium sp. D5] Length = 227 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 115/209 (55%), Gaps = 2/209 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L ED+ +++ ++ +L + V GE +E + ++D IILD+ + + G Sbjct: 4 MKLLFAEDEISMSEAVVDILTYHKYIVDAVYDGEAALEYARSAQYDGIILDIMMPKMSGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR TP+ +L+ + +ED+++GL GADDY+ KPF EL+ARIRA++RR Sbjct: 64 EVLGCLRREGYRTPILLLTAKAEVEDRIQGLDLGADDYLPKPFAMGELLARIRAMLRRRE 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I G++ +N + + G L EY+++E L L + L+ E L ++ Sbjct: 124 EFTPDIITCGNIYLNQKSYELSGNGQTFVLAKLEYRLMETLLLNQGMYLSSEELLVKVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKN 209 E E+ + V+I LRK+L AA G N Sbjct: 184 YETEAELGTVWVYISYLRKRL--AALGAN 210 >gi|222836662|gb|EEE75055.1| predicted protein [Populus trichocarpa] Length = 234 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD A+A ++ L+ + V D + DA++LD+GL D G + Sbjct: 6 RVLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGNGLD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 R LR A + P+ +LS D+V GL+ GADDY++KPF+ ELVAR RA++RR++ Sbjct: 66 WCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRAQR 125 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A + S++ + V +QG + LT +EYQ++ L R L++E L+ Sbjct: 126 LQPAPTASAAPADAMFSIDTQGQRVRMQGVALDLTRREYQLLRCLLERPGRILSREFLLD 185 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + +D + LR KL A +++I T G GY L Sbjct: 186 SIWGQDSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 230 >gi|167627435|ref|YP_001677935.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668005|ref|ZP_04755583.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876539|ref|ZP_05249249.1| two-component system response regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167597436|gb|ABZ87434.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842560|gb|EET20974.1| two-component system response regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 228 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL EDD L + L+ E V + GE + +D ++LD+G+ G Sbjct: 1 MRLLLAEDDLNLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 EVLR +R I P+ +L+ +ED+++GL GADDY++KPF +ELVARI+AI R Sbjct: 61 EVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RS + I GD S N ++TV G I ++ KE ++ +L + K L Sbjct: 121 TRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y E + ++V + LRKK++ N+I+T+ G GY ++++ Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYFVQKD 224 >gi|327482088|gb|AEA85398.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A ++ L + V G DG L ++D ++LD+ L + G+ Sbjct: 1 MRILVVEDEIKAAEYLQQGLIECGYTVDCVSDGLDGFHLALQNDYDIVLLDVNLPTMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R K T V +L+ +E KVRGL+SGADDY+ KPF EL+ARIR ++RR Sbjct: 61 EVLELIRRRK-QTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLLRRGE 119 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A S + DL ++ G RI LT KE+ ++ LL R LT+ ++ Sbjct: 120 AVALPSNLRVADLELDPGRHRAYRSGQRIDLTSKEFALLHLLMRRTGEVLTRTEITALVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + ++DV I +LR K+ G + I T+ G GYVL Sbjct: 180 DINFDCDTNVVDVAIRRLRMKVDEPFGDR-LIHTIRGVGYVL 220 >gi|329116733|ref|ZP_08245450.1| putative response regulator ArlR [Streptococcus parauberis NCFD 2020] gi|326907138|gb|EGE54052.1| putative response regulator ArlR [Streptococcus parauberis NCFD 2020] Length = 224 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILL+EDD +L++SI L + V D G++G+ + +D I+LDL L + GF Sbjct: 2 IKILLVEDDLSLSNSIFDFLDDFADVLQVFD-GDEGLYEAESGVYDLILLDLMLPEKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ LR I T V I++ S++DK G + GADDY++KPF EEL RI+A+++RS Sbjct: 61 QVLKELREKDIHTAVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + +L V+ + V V + L GKE++++ +N L K + ++ Sbjct: 121 KLMDSSLYYKNLKVDTERNVVTVDEKEVELLGKEFELLVYFLQNQNVILPKSQIFDRIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + +++V++ K+RKKL + ++T+ GY+L+ N Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTKFVAD-LQTLRSVGYILKTN 223 >gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 121/217 (55%), Gaps = 4/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ALA I L+L E FN + G E D ++LDL L + G EV Sbjct: 9 ILVVDDDDALAEMIGLVLAQEGFNAVFCENGSRAFETFMRSTPDLVLLDLMLPGMNGIEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + + P+ +L+ S ED V+GL++GADDYI+KPF EL+ARIR + R R Sbjct: 69 CQQIRRSS-NVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRL-RPRES 126 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q ++ GD+ +++D +TV+ + +T E+ ++ L L+++ L+ ++ G Sbjct: 127 RQLVVSIGDIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVW-GY 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++V + +LR K + G +I+TV G GY Sbjct: 186 TDVSDSLVNVHVQRLRAKF-DELGADRFIQTVRGVGY 221 >gi|229550945|ref|ZP_04439670.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315770|gb|EEN81743.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 258 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 121/219 (55%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++EDD+ I +L+ + V + +L + +FD ++ D+ + + G+ Sbjct: 36 VKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDGY 95 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR S P+ ++ I K +G SG DDY+ KP N EL+ RI+A++RR++ Sbjct: 96 QFAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRAK 155 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +L++ G+L++N +A T +V + +T +E+Q++ L + ++ +N +D Sbjct: 156 ITADNLLIVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFWD 215 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ +DV+I KLR+K A G I+T+ G GY Sbjct: 216 LASDTSMRAVDVYITKLREKFKAADGFT--IKTIHGLGY 252 >gi|229028114|ref|ZP_04184260.1| Two-component response regulator [Bacillus cereus AH1271] gi|228733205|gb|EEL84041.1| Two-component response regulator [Bacillus cereus AH1271] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEKNEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R +K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGY 227 >gi|710006|dbj|BAA06476.1| ycbL [Bacillus subtilis] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 7/226 (3%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +L+EDD +++ ++ L E F + GE+GI L + +D ++LD+ L + G + L Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 + +R K + PV ++S DK GL GADDYI+KPF+ EL AR++A +RR+ ++ Sbjct: 61 KIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119 Query: 124 ------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +I L++++D +V G + LT E+Q++ L + TK+ Sbjct: 120 AEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKDQIYRS 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ + II+V + +LR+K+ + YI+T+WG GY L E Sbjct: 180 VWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 225 >gi|295702415|ref|YP_003595490.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294800074|gb|ADF37140.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 225 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD +L H I LK E + V G++G+ L + +DA+ILD+ L + G Sbjct: 1 MRVLVVEDDASLLHGIVEGLKEEGYEVDCASEGDEGLFLAEQNIYDALILDIMLPGMTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR K+ T V L+ S+ED+V+GL GADDY+ KPF EL AR+R ++R + Sbjct: 61 DILKKLRKQKVLTKVIFLTAKDSVEDRVKGLDYGADDYLVKPFAMAELFARLRVMLRDLQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I G +S+ V + + LT KE+Q++E K L ++ N ++ Sbjct: 121 AE-EGMISYGPISIREANHEVMINESALTLTIKEFQLLEYFIRNKEQILIRDQIFNRVWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVLR 222 + V ++DV++ LRKKL N G Y+ TV G G++L+ Sbjct: 180 FTSDVGVGVVDVYVHHLRKKLQPFNCDG---YVRTVRGVGFMLK 220 >gi|269217233|ref|ZP_06161087.1| DNA-binding response regulator MtrA [Slackia exigua ATCC 700122] gi|269129370|gb|EEZ60455.1| DNA-binding response regulator MtrA [Slackia exigua ATCC 700122] Length = 237 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I+LI+DD++L + + E ++ +D G G+E+ + D ++LD+ L D+ GF+ Sbjct: 3 KIMLIDDDESLRELVGQIAAREGWDYCCSDNGAAGLEMLRRERPDVLVLDVMLPDMNGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V R +R PV LS I DK G SGADDY+ KPF EELV R++ + Sbjct: 63 VCRLIRSEGRRVPVVFLSAKGDIVDKSVGFNSGADDYLVKPFLTEELVLRVKVWLNRRAR 122 Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A+ GDL V ++G + L+ +E++++ LL+ T T+E Sbjct: 123 AAAATDARAKGSFRVGDLEVFFKKYEARLRGEAVALSSREFELLALLASEAGTVFTREQI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ L++ R+ + + V + K+R+K+ + Y+ TVW GY L Sbjct: 183 IDALWEHREAADPNTVTVLVRKIREKIEDDPSKPRYVLTVWRVGYKL 229 >gi|259648971|dbj|BAI41133.1| putative two-component response regulator [Lactobacillus rhamnosus GG] Length = 266 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 127/229 (55%), Gaps = 12/229 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED++ + ++L L+ E + + G+ ++ K FD ++LD+ L + GF Sbjct: 36 KILLVEDNREFSELLKLYLQGEGYILTRVFDGKIAMDTIKNNTFDVVLLDIMLPEKNGFN 95 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL+ LR K+ TPV I++ +D+V GL GADDY+ KPF+ L ARI+A +RR+ Sbjct: 96 VLKELRQTKM-TPVIIITARDMDQDEVLGLSLGADDYLKKPFSLVALNARIKAQIRRTTQ 154 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + H QS + DL ++ +TV R++LT KEY++++LL + +K+ Sbjct: 155 YAVYGYEKMHTQSQVTFADLRLDNLNQTVYKNDRRLNLTVKEYRLLKLLMIHPGHVFSKQ 214 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + ++V I +LR K+ + + YI TVWG GYVL Sbjct: 215 AIYEKVWGESYIGDENTVNVCIKRLRDKIQDV--NQRYIRTVWGIGYVL 261 >gi|242240600|ref|YP_002988781.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] gi|242132657|gb|ACS86959.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + + L +E F+ G +G++ ++ A+ILD+ L D+ G Sbjct: 1 MKILLVDDDAELGNMLCEYLTAEGFSTSQVMTGREGVDGAMSDQYTAMILDIMLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +VLR +R + PV +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 61 DVLRQVRRDR-QIPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119 Query: 119 SRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R A + + T GDL +N ++ E G LT E+ ++ELL +TK+ Sbjct: 120 DRSEASADVSTVSYGDLVINPSTRSSEWCGKAFDLTASEFNLLELLMRSSERVVTKDELS 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R E + +DV I +R+KL+ G IETV GY +R Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLALLDGCTLTIETVRSVGYRIR 226 >gi|258514614|ref|YP_003190836.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778319|gb|ACV62213.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 228 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+ +DDK + +IE+ L++E + ++ G + +EL + E II+D+ + + G Sbjct: 1 MNILVCDDDKTIVEAIEIYLENEGYKIFKASNGIEALELIEGNEIHLIIMDIMMPKMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +R K + PV +LS S DK+ GL GADDYI+KPFN EL+ARI++ +RR Sbjct: 61 RATMKIREEK-NIPVIMLSAKSEDTDKIIGLNLGADDYITKPFNPLELIARIKSQLRRFT 119 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S ++ TG L+++ ++K + V G IHLT +Y++++LL+ + + Sbjct: 120 ILGSLESKSNVYSTGGLAIDDESKIITVDGDEIHLTPVQYKILKLLTANAGRVFSIDEIY 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + V I K+R+K+ Y++ VWG GY Sbjct: 180 EKVWNETAFSPENTVAVHIRKIREKIEINPKEPKYLKVVWGIGY 223 >gi|229094974|ref|ZP_04225973.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229113927|ref|ZP_04243356.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669527|gb|EEL24940.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228688444|gb|EEL42323.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 239 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+ + + E ++LD+ + + G + Sbjct: 12 ILVVDDEKEIRKLITIYLKNEGYKVLQAGDGEEGLRMLEENEVHLVVLDIMMPKVDGIHM 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R AK P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 72 CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 130 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G++ +N+ V V G + LT +E+ ++ELL+ + E Sbjct: 131 NGFVIQNEDELEIGEMRINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 190 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 191 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 233 >gi|86356687|ref|YP_468579.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86280789|gb|ABC89852.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 230 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I V G DG+ + +D I++D L + G Sbjct: 4 MRILLIEDDIKTSDYIAKGFTEAGHVCDVFGDGRDGLFQAQREAYDVIVVDRMLPGLDGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R+LR AK+ TP L+ + ++D+V GL++G DDY++KPF EL+AR+ A+ RR Sbjct: 64 AIIRSLRAAKVGTPALFLTSIGGVDDRVEGLEAGGDDYLTKPFAFSELLARVNALGRRPP 123 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q ++ DL ++L + G I L +E+ ++E+L + +TK M L ++ Sbjct: 124 VQEQRTVLKVADLELDLIRREARRAGQAIELQPREFTLLEVLMRGEGRVITKTMLLERVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D +P+ +++ I +LR K+ + + T+ GY L Sbjct: 184 DFHFDPKTSVVETHISRLRAKVDKPFQAQ-LLHTIRNTGYSL 224 >gi|121583131|ref|YP_973572.1| two component heavy metal response transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120596393|gb|ABM39830.1| two component heavy metal response transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ A + L + V V G DG+ + +ILD+ L I GF Sbjct: 1 MKILVIEDEPRAADYLRQGLMESGYAVEVAHNGTDGLHAAVNGDHGLVILDIMLPGIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR ++ PV +L+ + +DKVRG GADDY+ KPF EL+AR+RA+++R + Sbjct: 61 AVLSALRTSR-QIPVLMLTARGNTDDKVRGFDLGADDYLLKPFQFPELLARVRALLKRGQ 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ DL ++ G RI L+ KE+ ++ LL+ R L++ + ++ Sbjct: 120 PVVKDPVLRAADLEIDPVRHRATRAGQRIDLSAKEFALLTLLAQRAGEVLSRTQIASLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D + + +++V I +LR K+ + K I TV G GYVL A Sbjct: 180 DIHFDSDTNVVEVAIRRLRAKIDDPFDDK-LIHTVRGVGYVLERRA 224 >gi|302188270|ref|ZP_07264943.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G E+ ILD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALNSEEYAVAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+ +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGVLAYDLDTRRFMLGEELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I++++ +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVAIVTFRGLGYLL 218 >gi|300771736|ref|ZP_07081610.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761402|gb|EFK58224.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD +A IE ++ + F + G G +L ++F II D+ L I G Sbjct: 1 MDILIIEDDLRVAQLIERAVREQGFQTMLAYDGMSGKKLALQHDFSLIITDIILPKIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++ + +R K P+ +L+ + + ++KV G +GADDY+ KPF EL+ARIRA+++R Sbjct: 61 DLCKEVRQLKPDLPIIMLTALGTTDNKVEGFDAGADDYLVKPFEMRELIARIRALLKRKD 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S A ++ DL +NL+ K V+ G I LT KE+ +++ L++ + Sbjct: 121 QSASVASFVLKYHDLEMNLNTKMVKRAGIEIELTPKEFNLLQYFLSHPEKVLSRSDIAEN 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + IDV+I LRKK+ K I T G G++LR Sbjct: 181 VWETHFDTGTNFIDVYINYLRKKIDKDFNHK-LIHTKPGMGFILR 224 >gi|237803881|ref|ZP_04591466.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025861|gb|EGI05917.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD ++ L + V T G DG+ L +D I+LD+ L I G+ Sbjct: 1 MHILLIEDDTKTGEYLKKGLGESGYRVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A+ PV L+ ++D++RGL+ GADDY+ KPF+ EL+ RIR I+RR Sbjct: 61 QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++L + V Q I LT KE+ ++ LL R+ +++ + ++D Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVMSRAQIASEVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++DV I +LR K+ K I TV G GYV Sbjct: 180 MNFDSDTNVVDVAIKRLRSKIDLPYPVK-LIHTVRGIGYV 218 >gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 236 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 14/236 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K +A ++ L+ E + V GE+ ++ + D I+LD+ L G E Sbjct: 5 RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR+RA +RR Sbjct: 65 VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRR--- 120 Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 H Q + I+ G L + DA V +G I LT +E++++ L+ +T+ Sbjct: 121 HTQIVAQEETNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E L ++ +V+ +DV + +LR+K+ + ++I T G GY LR ++ Sbjct: 181 EHLLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQE 236 >gi|332669109|ref|YP_004452117.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338147|gb|AEE44730.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 238 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 15/236 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+++ + L+ E + V G IEL + + D ++LDL L +PG E Sbjct: 3 RILLVEDEESYREPLTYQLEREGYEVVAAADGLQAIELFEEHGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR+ PV +L+ DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCRRLRLTS-DVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARMRAVLRRREA 121 Query: 121 -------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 L+V+G + +++D TV+V+G + KE+ ++E+L Sbjct: 122 AVVAGAGAPAPVLDEEDGLLVSGPVEMDVDRHTVKVRGELVAFPLKEFDLLEMLLRNAGR 181 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LT+ ++ ++ + K +DV + ++R K+ + TV G GY L E Sbjct: 182 VLTRGQLIDRIWGSDYVGDTKTLDVHVKRVRAKIEADPANPTLLLTVRGLGYKLEE 237 >gi|307945464|ref|ZP_07660800.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4] gi|307771337|gb|EFO30562.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4] Length = 228 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 3/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+IEDD A + L + + GE G+E +D +I+D L G Sbjct: 2 LKLLIIEDDAEAAAYLAKGLDELGHSADRAEDGEAGLEQAMAGSYDVLIVDRMLPKRDGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ +LR A TPV ILS + ++D+V+GL++G DDY+ KP+ EL AR+ A+ RR + Sbjct: 62 SVIESLRSAGDHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELQARVEALARRPK 121 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++ GDL ++ A + I L +E++++E L +T+ M L ++ Sbjct: 122 ASGDLETTYQVGDLVLDRLAHSCRRGDVEIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ +P+ +IDV I +LR K+ K ++T+ G GY +RE + Sbjct: 182 WEYHFDPQTNVIDVHISRLRAKIDKDF-DKPLLQTIRGAGYSIREQTR 228 >gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848 str. F0332] gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848 str. F0332] Length = 246 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 127/233 (54%), Gaps = 13/233 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ ++ + L+ F+V G++ ++ D +LD+ L D+ GF + Sbjct: 11 VLVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDHQAGAHLDLAVLDVMLPDMDGFTI 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121 LR LR PV L+ ++DK++GL G DDYI+KPF+ EE+VARIRA++RR+ Sbjct: 71 LRKLRERDAELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRRTHPS 130 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + ++T GDL +N + V G + L+ E++++ L + ++K L+H++D Sbjct: 131 DADAAVLTYGDLELNEETYDVRRAGQIVELSPTEFKLLRYLLINAERVVSKMQILDHVWD 190 Query: 181 GRDEPEVKIIDVFICKLRKKLSNA-AGGKN----------YIETVWGRGYVLR 222 EV I++ +I LR+K+ +A A G I T G GYVLR Sbjct: 191 YNWNGEVSIVESYISYLRRKIDSAEALGITDPEEAKAIVPLIHTKRGIGYVLR 243 >gi|329939961|ref|ZP_08289243.1| two-component system regulator [Streptomyces griseoaurantiacus M045] gi|329300787|gb|EGG44683.1| two-component system regulator [Streptomyces griseoaurantiacus M045] Length = 228 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 12/228 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58 MR+LL+EDD +A ++ +L F V GE+ + + + FD ++LDLGL D Sbjct: 1 MRLLLVEDDNHVAAALSAVLARHGFEVTHARSGEEALRALVPESAGFDVVLLDLGLPDQD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+EV +R + STPV +++ S + ++ GL GADDY+ KP++ EL+ARI A+ RR Sbjct: 61 GYEVCGKIR-KRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRR 119 Query: 119 S-----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + G+ ++ + G + + L + V V G + LT KE+ ++ LL+ R +E Sbjct: 120 TPHTDDTGNVETALRLGAVHIELPTRQVRVDGTPVQLTRKEFDLLALLAQRPGVVFRREQ 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ E + ++V + LR KL A IETV G GY L Sbjct: 180 IISEVWQTSWEGTGRTLEVHVASLRSKLRMPA----LIETVRGVGYRL 223 >gi|238926849|ref|ZP_04658609.1| two component response regulator [Selenomonas flueggei ATCC 43531] gi|238885381|gb|EEQ49019.1| two component response regulator [Selenomonas flueggei ATCC 43531] Length = 225 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL EDD L I+ ML+ + +V +VTD G D + E+D +ILD + G Sbjct: 1 MRVLLAEDDLRLGKLIQYMLEQNDISVEWVTD-GSDIYAYATYTEYDILILDWMMPGESG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + LR + +L+ S+ED+V+GL +GADDY+ KPF EL+AR+RA+ RRS Sbjct: 60 VDACARLRRNGYDRAILMLTARDSVEDRVKGLDAGADDYLVKPFEFSELLARLRALGRRS 119 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q + G +N A +E G I L+ +E+Q+ +LL+ + +++ L+ + Sbjct: 120 TQRIQHEVDEIGGFKLNRTANILEKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ID ++ LRKKL +AAG + I+T+ G GY L Sbjct: 180 WGLEADVSSNNIDSYMKMLRKKL-DAAGEEASIKTIRGVGYKL 221 >gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 227 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A ++L L+ E + + G + +E +D I+LD+ L +I G E Sbjct: 4 RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR +R+ P+ +L+ S+ DKV GL GA DYI+KPF EEL+ARIRA +R S Sbjct: 64 VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + S DL LD KT EV+ I LT +E+ ++ L +N L +E + Sbjct: 124 VKEEENSSYQIADLY--LDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVT 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + ++DV+I LRKK+ + + TV G GYVL+ Sbjct: 182 NVWGFDYYGDTNVVDVYIRYLRKKV-DCNVDVPLVHTVRGVGYVLK 226 >gi|167759612|ref|ZP_02431739.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704] gi|167662738|gb|EDS06868.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704] Length = 229 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A IEL L+++ ++VY G++ ++ + D ILD+ L DI GF Sbjct: 1 MNILVVDDEKEIADVIELYLQNDQYSVYKFYTGQEALDCIGGMKIDLAILDIMLPDIDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R K + PV +L+ + DK+ GL GADDYI KPFN ELVAR++A +RR Sbjct: 61 QILKQIR-EKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYT 119 Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKEM 173 + + +I G L +N + + LT E+ ++ LL + + ++E+ Sbjct: 120 QYNEGAKEEGEIIDFGGLVLNRTSHECIYNEMPLTLTPIEFDILWLLCENRGKVISSEEL 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 F ++ + + V I LR+K++ G ++I+TVWG GY + E Sbjct: 180 FEKVWHEKYYKNSNNTVMVHIRHLREKMNAPTGKSDFIKTVWGVGYKVEE 229 >gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola ACS-139-V-Col8] gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola ACS-139-V-Col8] Length = 234 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 126/228 (55%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I LK+E +++ GE+ +E + D ++LDL L G E Sbjct: 3 KILVVDDEKPISDIITYTLKNEGYDIVTAFDGEEALEQFEKENPDLVLLDLMLPKKTGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R + P+ +L+ S DKV GL+ GADDY++KPF+ EL AR++A +RR Sbjct: 63 VCREIR-KDSAVPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASLRRNAL 121 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + S IV GDL V+ +A +G I LT +E++++ L+ +T+E Sbjct: 122 VTSDTSETESSDIVIGDLVVHQEAYIASKRGQEIELTHREFELLHYLAKHIGQVMTREHL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV I +LR+K+ + +YI T G GY L+ Sbjct: 182 LETVWGYDYFGDVRTVDVTIRRLREKIEDQPSHPSYIVTRRGVGYFLK 229 >gi|295106136|emb|CBL03679.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 238 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD A+ I LK + + + G + D IILDLGL D G ++ Sbjct: 13 VLIVEDDNAVKSLIATALKVQGYRLLEAGTGGAALLEATTKNPDVIILDLGLPDADGIDL 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R TP+ ++S + DKV L +GADDY+ KPF+ EEL+AR+R RR Sbjct: 73 IRQVRTWS-HTPIIVVSARTEDADKVAALDAGADDYLIKPFSVEELLARLRVATRRLAAD 131 Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + + GDL ++ A+TV + G +HLT EY+++ LL+ LT L Sbjct: 132 SGTDRDGPVYENGDLRIDYAARTVTLAGEEVHLTPIEYKLLALLARNTGKVLTHNAILKE 191 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + VF+ LRKK+ Y++T G GY Sbjct: 192 VWGNALASDLPSLRVFMATLRKKIERDPAHPAYLQTHVGIGY 233 >gi|225570581|ref|ZP_03779606.1| hypothetical protein CLOHYLEM_06683 [Clostridium hylemonae DSM 15053] gi|225160594|gb|EEG73213.1| hypothetical protein CLOHYLEM_06683 [Clostridium hylemonae DSM 15053] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DD + + ++ +L E + G + + L + D I+LDL L + G E Sbjct: 8 KILIIDDDMYIGNMLDELLTREGYFTGRAYSGTEALLLLSREKPDLILLDLMLPGLSGEE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L L PV I+S +S++DKV L GA DYI+KPF+ +EL+ARI +R + Sbjct: 68 ILPELE----GIPVIIMSAKTSVDDKVTLLLGGAADYITKPFDTKELLARIAVQLRSTAV 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A +V D++V+ + TV V G + +T EY +++LL + TK + L H+ + Sbjct: 124 TSAAHSLVFDDITVDTASHTVHVHGLPVRMTRTEYAILKLLMQNPSQVCTKSVILEHISE 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + V + +RKKL + AG K+YIE+VWG G+ ++EN Sbjct: 184 DTPDCTESSLKVHVSNMRKKLQD-AGRKDYIESVWGIGFKMKEN 226 >gi|158422761|ref|YP_001524053.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158329650|dbj|BAF87135.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 238 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD+ A + + V GEDG+ ++D +++D L G Sbjct: 13 MRLLLVEDDQDAADYLRKAFREAGHVVDHAADGEDGLAYALDGKYDVLVVDRMLPRRDGL 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR +TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ A+ RR Sbjct: 73 SLVAELRGRGDATPVLILSALGQVDDRVVGLRAGGDDYLPKPYAFTELLARVEALSRRGA 132 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ A V G I L +E++++E L +T+ M L +++ Sbjct: 133 PQAAETVYRVGDLELDRLAHRVARGGKEIPLQPREFRLLEYLMRHAGQVVTRTMLLENVW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 D +P+ +IDV + +LR K+ I TV G GY++R Sbjct: 193 DYHFDPQTNVIDVHVSRLRSKIDKGF-DVPLIHTVRGAGYMVR 234 >gi|154250109|ref|YP_001410934.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154154045|gb|ABS61277.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 229 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 133/233 (57%), Gaps = 10/233 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ +A +++ +LKS+ F V + D + ++ I+LDL L D Sbjct: 1 MRVLIVEDERIIAENLQKLLKSDGFESDVANGINDMYRKLEKNTYEVILLDLMLPDGNAI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ L+ + ++S S+ DK+ G++ GADDY+ KPFN E+VAR++A +RR++ Sbjct: 61 NEIQTLKNEFPDIGIIVISAKSTDIDKILGIELGADDYVGKPFNPREVVARVKAYLRRTK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +I G L + V G +I LT KE+++++LL+ R + ++E L ++ Sbjct: 121 G-IKEVIRYGKLEIYPSDYVVLYDGQKIDLTAKEFEILKLLAQRPDRVYSREEILETIW- 178 Query: 181 GRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 DE +V +++DV I LRKKL GK++I TV G GY + ++ E Sbjct: 179 -TDEYDVFDRVVDVHINSLRKKL-----GKDWIITVRGVGYKFSKKGDAQSSE 225 >gi|299065376|emb|CBJ36545.1| Transcriptional regulatory protein [Ralstonia solanacearum CMR15] Length = 243 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 126/241 (52%), Gaps = 20/241 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD LA + L + F V V G+ + + + +ILDL L + G E Sbjct: 9 RVLLIEDDDRLAQLVSEYLGNYEFTVEVVRRGDIAVAAVREHRPALVILDLMLPHMDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R A PV IL+ D+V GL+ GADDY+ KP LVAR RA++RR Sbjct: 69 VCRRIR-AFSRVPVLILTARVDTYDQVAGLEIGADDYVLKPVEPRLLVARARALLRRVAS 127 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + H +L V G+L ++ +TV +G + L E+ ++ +L+ T L++ Sbjct: 128 VMPAAEPAAPHDDTL-VFGELVISPPNRTVTWRGQPVDLKTAEFNLLLILARAAGTVLSR 186 Query: 172 EMFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + L L +DG D + +D I +LR++ +A+ + I+T+WGRGY+ +A + Sbjct: 187 DDILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWE 242 Query: 228 E 228 E Sbjct: 243 E 243 >gi|229159425|ref|ZP_04287444.1| Two-component response regulator [Bacillus cereus R309803] gi|228624055|gb|EEK80862.1| Two-component response regulator [Bacillus cereus R309803] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R +K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G A + + G++ +N+ V V G + LT +E+ ++ELL+ + E Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGY 227 >gi|261854834|ref|YP_003262117.1| transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261835303|gb|ACX95070.1| two component transcriptional regulator, winged helix family [Halothiobacillus neapolitanus c2] Length = 262 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 119/242 (49%), Gaps = 8/242 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLG-EDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+++DD + + L+ + F+V V G E I L D ++LD+ L G Sbjct: 16 RILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDGL 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 + R L K PV +LS D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 76 SIARRLD-PKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +RG I GD +++ + + + LT E+Q+++ R N + ++ Sbjct: 135 MEPDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVINRDQI 194 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234 +++L + IDV I +LR+K+ Y+ T+WG GY+ + + Sbjct: 195 MDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSGRSPRSPDAS 254 Query: 235 TA 236 TA Sbjct: 255 TA 256 >gi|207744605|ref|YP_002260997.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|206596011|emb|CAQ62938.1| response regulator protein [Ralstonia solanacearum IPO1609] Length = 243 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 127/240 (52%), Gaps = 18/240 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLIEDD LA + L + F V V G+ + + ++ +ILDL L + G E Sbjct: 9 KVLLIEDDDRLAQLVSEYLGNYEFTVEVVRRGDTAVAAVREHQPALVILDLMLPHMDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A PV IL+ D+V GL+ GADDY+ KP LVAR RA++RR Sbjct: 69 VCRRIR-AFSRVPVLILTARVDTYDQVAGLEIGADDYVLKPVEPRLLVARARALLRRVVP 127 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + ++V G+L+++ +TV +G + L E+ ++ +L+ T L+++ Sbjct: 128 ALPAAEPAVPHDDVLVFGELAISPPNRTVTWRGQLVDLKTAEFNLLLILARAAGTVLSRD 187 Query: 173 MFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L L +DG D + +D I +LR++ +A+ + I+T+WGRGY+ +A +E Sbjct: 188 DILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 243 >gi|167856144|ref|ZP_02478884.1| transcriptional regulatory protein CpxR [Haemophilus parasuis 29755] gi|167852740|gb|EDS24014.1| transcriptional regulatory protein CpxR [Haemophilus parasuis 29755] Length = 241 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 122/236 (51%), Gaps = 17/236 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD L + L E F+++ G+D + + +D I+LD+ + + G E Sbjct: 3 KILLVDDDVDLTELLSESLSLEGFDIHTVHNGQDALTELEIQNYDLILLDVMMPILNGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R K STPV +LS D+V GL+ GADDY+ KPFN ELVARI+AI+RRS Sbjct: 63 TLKQIR-QKYSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRSIT 121 Query: 122 HAQSLIVTGDLSVN--LDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRK 165 S+ V +N D K ++ G +H LTG E+ ++++L Sbjct: 122 QKPSIPVETTFVINDDDDRKLLQFGGVELHPGRQQAIYEGKDLDLTGTEFALLQILMRNP 181 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L +E+ + R P + ID+ I LRKKL + +T+ GRGY+L Sbjct: 182 GQILLRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 237 >gi|152967758|ref|YP_001363542.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151362275|gb|ABS05278.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 117/218 (53%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD ALA + ++L+ E G+ + + D ++LDL L G E Sbjct: 4 RVLVVDDDTALAEMLGIVLQGEGLETRFCADGDQAVGAFRATRPDLVLLDLMLPGTDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A+ P+ +L+ S D V GL++GADDY+ KPF +ELVAR+RA +R + Sbjct: 64 VCRQIR-AESGVPIVMLTAKSDTVDVVLGLEAGADDYVVKPFKPKELVARVRARLRSAGE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GDL++++ +V G + LT E++++ L+ + T+E+ L ++ Sbjct: 123 RPPETLRIGDLTIDVAGHSVRRDGRSLPLTPLEFELLVTLARKPWQAFTRELLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEHPEIVVTVRGVGY 220 >gi|329922877|ref|ZP_08278393.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] gi|328941650|gb|EGG37935.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] Length = 231 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 127/226 (56%), Gaps = 12/226 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ +++ ++ L+ E + V G++ +E + ++ D ++LD+ + + G++ Sbjct: 3 KVLVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVMMPRLSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R L + + +L+ I DKV GL+ GADDY++KPF+ E++AR++A+ RRSR Sbjct: 63 VCRKLE-DRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRT 121 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q +I L++NL +T+ +G + LT KE+ ++ LL+ ++E Sbjct: 122 PEAAGKQAPEQHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSREA 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++D + +D+ + +LRKKL N I+TV+G GY Sbjct: 182 LLEQVWDMDFAGGTRTVDIHVQRLRKKLGNQ---HEVIQTVYGIGY 224 >gi|315650084|ref|ZP_07903162.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315487667|gb|EFU77972.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 225 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 126/221 (57%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ LA S++ + + + G +G+EL + FD ++LDL L + GF Sbjct: 1 MNILIVEDEVLLASSLKEIFEECGHSTICAYDGMEGLELARSSHFDILVLDLMLPKLNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R LR K P+ +L+ S I D+V GL SGAD Y++KPF++ EL+A + A++RR Sbjct: 61 QVARTLRKEKNGLPILMLTAKSDILDRVEGLDSGADYYLTKPFDRRELLACVNALLRR-H 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G+ ++++D+ + + I L+ KE+QM+ LL ++K +FL +++ Sbjct: 120 GKEVNQISYGNTTLDIDSGELISGENSIRLSSKEFQMMRLLLKEGKNNISKNLFLEKIWE 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V+I LRKKL + + I + G GY L Sbjct: 180 YDSDATENNVEVYIGFLRKKLKTLSSDISIIAS-RGLGYHL 219 >gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896] Length = 230 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 127/225 (56%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ LK E +++ G DG + D I+LD+ L + GF+V Sbjct: 5 ILIIEDEKPISDIVKFNLKREGYDIITAFDGLDGYQKGIQENVDLILLDIMLPSMNGFDV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R K S P+ +++ DK+ GL+ GADDYI+KPF+ EL+AR++A +RR+ Sbjct: 65 CRHIR-EKSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKANIRRTSMP 123 Query: 120 -RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+S LI +L ++ +V + LT +EY++++ L+++ N ++E L Sbjct: 124 NNNSAESDLIQHKNLVIDTSKYSVTKNDTVLELTVREYELLKFLAVQPNQVFSREQLLKQ 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +++ +DV I +LR+KL + A YI T G GY + Sbjct: 184 VWGYEYYGDIRTVDVTIRRLREKLEDDASNPTYILTKRGVGYFFK 228 >gi|330992747|ref|ZP_08316691.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp. SXCC-1] gi|329760225|gb|EGG76725.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp. SXCC-1] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L +++ ++ + V ED +D ++LDLGL D G Sbjct: 1 MRILIVEDEHDLGAAVQECVRLDGHAVDWFTTIEDARAALATVAYDFMLLDLGLPDGNGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++LR +R + + + + D++ GL GADDYI KP++ ELVARI A+ RR Sbjct: 61 DLLREIRRTSSDIAILVTTAEDQVSDRIAGLSDGADDYIVKPYDLNELVARIAAVARRYA 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R AQ I GD++++ + ++V G ++LT +E+ ++ELLS +++ Sbjct: 121 APRRQAQYHI--GDITIDRENRSVSRAGQGLNLTAREWAIMELLSRSPGRIYSRQQIDTA 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LY + + ++VFI +LR+K+ G I T+ GRGY L E Sbjct: 179 LYALDQDVDSNTVEVFISRLRRKV-----GNTVIRTIRGRGYCLDE 219 >gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA] gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++AI+RRS Sbjct: 63 VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEF 121 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + G+L + DA + G + LT +E++++ L+ +T+E Sbjct: 122 AVDTQESEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232 >gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + + + G+DG++ ++D IILD+ L + GFE Sbjct: 3 RILIVEDDPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDYDLIILDIQLPGMSGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 + + +R ++ P+ I+S + DK+RG GADD+++KPF+ ELVAR +A + R R Sbjct: 63 ICKTIR-ERLDVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHLARYER 121 Query: 121 GHAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + I D L++N + V V + LT KE++++ ++ N +K+ Sbjct: 122 FKSGQKISPDDSLRIRELTINPSSHRVFVHEQEVFLTAKEFEVLVFMATNPNRVFSKDQL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I ++R+KL +IETVWG GY Sbjct: 182 FEKIWGLDSNGDIATVTVHISRIREKLEADPSNPQFIETVWGAGY 226 >gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIPG 59 RIL++ED+ A+ + + L+ ++V + GE ++ + EFD ILD+ + I G Sbjct: 3 RILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGIDG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117 V + LR + + +L+ + DKV GL GADDY++KPF+ ELVAR+ ++ R Sbjct: 63 LTVCKELRKKSGNLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSLYRRV 122 Query: 118 -----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 R + Q +V+GD +NL + ++ +G I LT E+Q++E L + Sbjct: 123 AIAEMREENNFQEELVSGDFVLNLRNRALKKKGRMIELTQVEFQIMEYFFSNPGVALDRT 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L H++ E KI+DV I +LR K+ + +I TVWG GY Sbjct: 183 NILTHVWGEAYYGEEKIVDVNIRRLRMKIEDEPSNPKHIVTVWGLGY 229 >gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL ++ YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGDSG---EYIKTIYGVGYKL 221 >gi|83718179|ref|YP_439959.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83652004|gb|ABC36068.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 255 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +E LK E F V G+ + + ++LDLGL D G Sbjct: 36 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 95 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR + PV +++ ++ D++ GL GADDY+ KPF EEL+ARIRA+ RR Sbjct: 96 AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 155 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+++ G L ++ V G + L+ KE+ ++ L +++E F LY Sbjct: 156 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 215 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E + V I LRKKL G + I TV G GY + + A Sbjct: 216 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 255 >gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 232 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +D+ +A IE+ L+ E ++V GE+ I + + D +ILD+ + + G+ Sbjct: 4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKMDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R K P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 64 EVTRQIR-TKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++S + G + +N + +TV+V G +I LT KE+ ++ LL+ E Sbjct: 123 TLNQPKVAESKSALELGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ + V I LRKKL I+TVWG GY Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|15801327|ref|NP_287344.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H7 EDL933] gi|15830856|ref|NP_309629.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H7 str. Sakai] gi|168749733|ref|ZP_02774755.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4113] gi|168756469|ref|ZP_02781476.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4401] gi|168762547|ref|ZP_02787554.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4501] gi|168770998|ref|ZP_02796005.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4486] gi|168776057|ref|ZP_02801064.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4196] gi|168782467|ref|ZP_02807474.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4076] gi|168787605|ref|ZP_02812612.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC869] gi|168800458|ref|ZP_02825465.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC508] gi|195938762|ref|ZP_03084144.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H7 str. EC4024] gi|208807257|ref|ZP_03249594.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4206] gi|208816336|ref|ZP_03257515.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4045] gi|208822245|ref|ZP_03262564.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4042] gi|209395806|ref|YP_002270047.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4115] gi|217328143|ref|ZP_03444225.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. TW14588] gi|254792590|ref|YP_003077427.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H7 str. TW14359] gi|261227231|ref|ZP_05941512.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli O157:H7 str. FRIK2000] gi|261258762|ref|ZP_05951295.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli O157:H7 str. FRIK966] gi|291282165|ref|YP_003498983.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli O55:H7 str. CB9615] gi|81764773|sp|Q8X738|PHOP_ECO57 RecName: Full=Transcriptional regulatory protein phoP gi|12514781|gb|AAG55956.1|AE005328_14 transcriptional regulatory protein [Escherichia coli O157:H7 str. EDL933] gi|13361066|dbj|BAB35025.1| transcriptional regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|187768498|gb|EDU32342.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4196] gi|188015943|gb|EDU54065.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4113] gi|188999973|gb|EDU68959.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4076] gi|189356343|gb|EDU74762.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4401] gi|189360170|gb|EDU78589.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4486] gi|189367118|gb|EDU85534.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4501] gi|189372453|gb|EDU90869.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC869] gi|189377228|gb|EDU95644.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC508] gi|208727058|gb|EDZ76659.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4206] gi|208732984|gb|EDZ81672.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4045] gi|208737730|gb|EDZ85413.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4042] gi|209157206|gb|ACI34639.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4115] gi|209772868|gb|ACI84746.1| transcriptional regulatory protein [Escherichia coli] gi|209772870|gb|ACI84747.1| transcriptional regulatory protein [Escherichia coli] gi|209772872|gb|ACI84748.1| transcriptional regulatory protein [Escherichia coli] gi|209772874|gb|ACI84749.1| transcriptional regulatory protein [Escherichia coli] gi|209772876|gb|ACI84750.1| transcriptional regulatory protein [Escherichia coli] gi|217318570|gb|EEC26996.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. TW14588] gi|254591990|gb|ACT71351.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli O157:H7 str. TW14359] gi|290762038|gb|ADD55999.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli O55:H7 str. CB9615] gi|320187857|gb|EFW62527.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7 str. EC1212] gi|320637598|gb|EFX07398.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H7 str. G5101] gi|320643158|gb|EFX12359.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H- str. 493-89] gi|320648095|gb|EFX16771.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H- str. H 2687] gi|320653928|gb|EFX22002.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659408|gb|EFX26977.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O55:H7 str. USDA 5905] gi|320664545|gb|EFX31696.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H7 str. LSU-61] gi|326339409|gb|EGD63221.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7 str. 1044] gi|326341468|gb|EGD65259.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7 str. 1125] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ ++ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ R +S P+ +L+ S +DKV L +GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLICRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + + I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + E IDV + +LRKK+ A + I TV G+GY+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220 >gi|90023343|ref|YP_529170.1| two component transcriptional regulator [Saccharophagus degradans 2-40] gi|89952943|gb|ABD82958.1| two component transcriptional regulator, winged helix family [Saccharophagus degradans 2-40] Length = 232 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 7/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED + + I + L+ +++V G +G+ L FD IILD+ L + G + Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR I TP+ +L+ S D+V GL++GADDY++KPF+ EL AR++A +RR Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S A + G+L ++ + + + I LT KE+ ++ ++ ++E Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + ++ I +LR KL Y+ TVWG GY Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGY 228 >gi|312130796|ref|YP_003998136.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311907342|gb|ADQ17783.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 225 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 125/229 (54%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 M IL+IEDD L +I L++E F+V D DG+ +F ++ IILD+ L Sbjct: 1 MNILVIEDDPTLNKNIAEALQAEGFHV---DGVFDGLLAERFLSKKDYHTIILDINLPGK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EVL + R TPV +L+ +EDKV+G GADDY++KPF ELV R++++ + Sbjct: 58 NGYEVLASFREKDEETPVLLLTAFGELEDKVKGFDLGADDYLTKPFFMRELVLRVQSLTK 117 Query: 118 R--SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R S ++++V D+ V+L KTVE QG I LT +E+Q++ L ++K + Sbjct: 118 RKLSGMGRKNVLVFEDIRVDLGRKTVERQGKEIILTPREFQILVRLCQTPGELVSKAELI 177 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E I+V+I LR KL K I+T G GY L E+ Sbjct: 178 EEIWGTTLEVNTNTIEVYINFLRNKLDKPF-HKQSIKTKVGYGYYLHED 225 >gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 232 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 8/232 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D++A+ S+ L+ ++V + G++ + + + D +LD+ + + G Sbjct: 1 MKILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQEQPDLTVLDVMMPQLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + P+ +L+ + D+V GL +GADDY+ KPF EEL+AR+R+++RR+R Sbjct: 61 GVCRELRSSGYDRPILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAR 120 Query: 121 GHAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A G DL +++ ++ V I LT E+ ++ LL LT++ Sbjct: 121 ADAIQQDAEGGSELSFEDLHLDISSRDVRRGDRHISLTRTEFSLLHLLLRNPRKVLTRQK 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ ++V+I LR+K + A G I TV G GYV+RE+A Sbjct: 181 ILEEVWGHEFPSSGNALEVYIGYLRRK-TEADGEPRLIHTVRGVGYVMRESA 231 >gi|311114543|ref|YP_003985764.1| response regulator [Gardnerella vaginalis ATCC 14019] gi|310946037|gb|ADP38741.1| response regulator [Gardnerella vaginalis ATCC 14019] Length = 250 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 11/231 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F+V G + I++ + D I++D+ L DI GF V Sbjct: 13 IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPDIDGFTV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R ++ PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 73 TRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQDP 132 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ DL +N D+ V G I L+ EY+++ L + L+K LNH++ Sbjct: 133 DEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 192 Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLR 222 + I++ +I LRKK+ N G IET G GY++R Sbjct: 193 YDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMIR 243 >gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii M21/2] gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii M21/2] gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 228 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + I L+ + G + FD +ILDL + + G Sbjct: 3 KILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQLSGGGFDLVILDLMMPFMDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR +R I+TPV IL+ DK+ GL+SGADDY+ KPF+ ELVAR+RA++ R+ Sbjct: 63 CLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLNRTMP 122 Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + G+L+++ + TV V G + LT KE+ ++ L+ K L++E L + Sbjct: 123 RPTEAADTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQKV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ E + +D + LR L ++YI TVWG GY +A Sbjct: 183 WNYDYFGEDRTVDTHVKMLRGHLGKC---RSYIATVWGIGYKFDPDA 226 >gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 290 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + V + GE+ +E+ + D ++LD+ L + GF V Sbjct: 28 ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPKMDGFAV 87 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDYI KPF+ +EL ARI I+RR G Sbjct: 88 CRRLR-AESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPG 146 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A Q ++ GDL V+ + + V G RI LT E+ ++ELL + + Sbjct: 147 SATAEIRDLPVGQGVLRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVPR 206 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 207 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256 >gi|15597719|ref|NP_251213.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107101969|ref|ZP_01365887.1| hypothetical protein PaerPA_01003016 [Pseudomonas aeruginosa PACS2] gi|116050466|ref|YP_790715.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|152984654|ref|YP_001348074.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|218891499|ref|YP_002440366.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254235520|ref|ZP_04928843.1| hypothetical protein PACG_01439 [Pseudomonas aeruginosa C3719] gi|254240954|ref|ZP_04934276.1| hypothetical protein PA2G_01634 [Pseudomonas aeruginosa 2192] gi|296389055|ref|ZP_06878530.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313107420|ref|ZP_07793610.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9948578|gb|AAG05911.1|AE004679_5 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|5921515|emb|CAB56468.1| czrR protein [Pseudomonas aeruginosa] gi|115585687|gb|ABJ11702.1| putative DNA-binding heavy metal response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126167451|gb|EAZ52962.1| hypothetical protein PACG_01439 [Pseudomonas aeruginosa C3719] gi|126194332|gb|EAZ58395.1| hypothetical protein PA2G_01634 [Pseudomonas aeruginosa 2192] gi|150959812|gb|ABR81837.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] gi|218771725|emb|CAW27499.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|261411913|gb|ACX81358.1| CzcR [Pseudomonas aeruginosa] gi|310880112|gb|EFQ38706.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 224 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A + L + V + G DG+ + + ++ +ILD+ L I G+ Sbjct: 1 MRILIIEDEVKTADYLHQGLTESGYIVDRANDGIDGLHMALQHPYELVILDVNLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 ++LR LR + S V +L+G + DKVRGL GADD++ KPF EL+AR+R+++RR Sbjct: 61 DLLRRLR-ERSSARVMMLTGHGRLTDKVRGLDLGADDFMVKPFQFPELLARVRSLLRRHD 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + Q ++ DL ++ RI+LT KE+ ++ LL R +T+ ++ ++ Sbjct: 120 QAPMQDVLRVADLELDASRHRAFRGRVRINLTTKEFALLHLLMRRNGDVITRTQIISLIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V IC+LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDNDSNVVEVAICRLRAKIDDGFDLK-LIHTIRGVGYVL 220 >gi|320332983|ref|YP_004169694.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754272|gb|ADV66029.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 249 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + + L L+ E F+V G +G+ + D ++LD+ L GF Sbjct: 31 RILIVEDDPGIREYLSLGLRYEGFDVRSAATGGEGLTQYAEHGADLVVLDVMLPGPDGFA 90 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LR LR A+ + PV +L+ S++D++ GL+SGADDY++KPF ELVARIR ++RR+R Sbjct: 91 FLRDLR-ARDAVPVVMLTARDSVDDRILGLESGADDYLTKPFAFGELVARIRTVLRRARP 149 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ DL +N ++ G R+ + + ++ L+ L K + L+ ++ Sbjct: 150 DTLGIVRYADLELNETSREARRGGQRLDMRPTTFDLLVFLARHPERVLPKSVILDAVWGP 209 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++++++ R+ L G + T+ G GY+L+E Sbjct: 210 QFLGSDNVVELYVGYARRAL----GTPPLLHTLRGAGYMLKEQ 248 >gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ L E + V GE+ IE+ + I+LD+ L GF+ Sbjct: 4 KILVVDDEKPIVDILKYNLAKEGYEVIAAYDGEEAIEVAFSQNPNLILLDVMLPKQDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K++ P+ +L+ DKV GL+ GADDY++KPF EL+ARI+A +RR Sbjct: 64 VCKKLR-EKLACPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANLRRLTL 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + Q L+ DL ++L + V +G+ + LT +E+++++ L+ + ++E L Sbjct: 123 SNPVEEQKLLKVKDLEIDLASFQVRKKGNTLELTFREFELLKFLAAQPGQVFSREKLLEE 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ +++ +DV I +LR+K+ + +YI+T G GY N Sbjct: 183 VWGYEYYGDIRTVDVTIRRLREKIEDDPSNPSYIKTKRGVGYYFNRN 229 >gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 240 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD+ +A + L L+ E + + G + L +DA+ILDL L + G E Sbjct: 6 KILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQVWDAVILDLMLPHVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+AR++A+ RR Sbjct: 66 ICRRIRQMARYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFRRQEA 125 Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ + G L+++ A+ V ++G + LT +E+ ++ + ++ L Sbjct: 126 MGQNIRLEGGMISCHGLAIDPLAREVRLRGELVDLTPREFDLLYWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + E ++ I +LR K+ A I TVWG+GY Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRTKIERDAAEPEVILTVWGKGY 229 >gi|294507174|ref|YP_003571232.1| phosphate regulon transcriptional regulatory protein phoB [Salinibacter ruber M8] gi|294343502|emb|CBH24280.1| Phosphate regulon transcriptional regulatory protein phoB [Salinibacter ruber M8] Length = 253 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60 R+L+ EDD L S+E + V+ GED + E+ +D ++LD+ L GF Sbjct: 14 RLLIAEDDPDLGSSLESFFAQHGYEVHHAMEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR R + + +PV +L+ E K+RG GADDY++KPF+ + L AR+ A++ RS+ Sbjct: 74 EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKVLAARVEAVLSRSQ 133 Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + G++SV+ +TV I LT E+ ++ + T+++E L Sbjct: 134 SALPDTGDVFAFGNVSVHFPDETVTRDSEPIGLTDLEFDILTYFIEHRGRTVSREQLLRD 193 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + ID + LRKK+ Y++TV+G GY Sbjct: 194 VWGISGDITTRTIDRHVASLRKKIEPTPDDPAYLQTVYGIGY 235 >gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis] Length = 241 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 131/238 (55%), Gaps = 11/238 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ ++ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RRS Sbjct: 64 VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123 Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A S IV GDL + D + ++ LT KE++++ L K LT+ Sbjct: 124 RAPSSEMKNDEMEGQIVIGDLKILPDHYEAIFKESQLELTPKEFELLLYLGRHKGRVLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRK-KLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ L+ +++ + +I+DV I LR K+ N YI+T+ G GY L E +E Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRPTKIENNTKKPIYIKTIRGLGYKLEEPKMNE 241 >gi|330825319|ref|YP_004388622.1| two component heavy metal response transcriptional regulator [Alicycliphilus denitrificans K601] gi|329310691|gb|AEB85106.1| two component heavy metal response transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 221 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/205 (34%), Positives = 117/205 (57%), Gaps = 1/205 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ + L F + G DG+ L E+D +ILD+ L + G+ Sbjct: 1 MKILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL++LR + PV L+ +ED+V+GL+ GADDY+ KPF+ EL+AR+R I+RR R Sbjct: 61 QVLQSLRNRGLQMPVLYLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ + DL ++L + V G RI LT KE+ ++ELL R L + + + ++ Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA 204 D + + +I+V + +LR K+ Sbjct: 181 DMNFDSDTNVIEVAMRRLRLKIDEG 205 >gi|172036610|ref|YP_001803111.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171698064|gb|ACB51045.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 231 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 14/229 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 MRILL+ED+ L ++I+ L N Y+ D +DG E E + I D L Sbjct: 1 MRILLVEDENDLGNAIKRALIQHN---YIVDWAQDGEEANDLIEIGLNLYTIGIFDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 I G ++++ +R P+ +L+ EDKV GL +GADDY+ KPF EL+AR+RA+ Sbjct: 58 KISGIDLIKKIRQQNSFLPILMLTAKDREEDKVIGLDAGADDYLVKPFGMAELLARLRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLT 170 RR + G ++++ T+ Q + LT KE+Q++E N +T Sbjct: 118 QRRFPTINPQKLTVGKITLDYSNYTIYFQEETGDNKPLSLTNKEFQLLEYFMKHPNQIIT 177 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ L+ L++ +EP ++ I LR+KL +G +N IETV+G GY Sbjct: 178 RDQILSQLWEWGNEPMSNVVAAQIRLLRRKLE-PSGMENCIETVYGLGY 225 >gi|220915559|ref|YP_002490863.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953413|gb|ACL63797.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 230 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD ++ ++L L E + V GE G++L + + D +++D+ L + G E Sbjct: 4 RILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMGGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R P+ ILS + DKV GLQ GADDY+ KPF +EL+ARI A++RR R Sbjct: 64 VIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRRA 123 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ G + ++LDA+ V G + LT +E+ ++ + ++E + Sbjct: 124 RGEGVQPKAIRRVGGIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLME 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + +D F+ +LR + + A ++ETV G GY Sbjct: 184 AVWGSRYFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGY 226 >gi|311107856|ref|YP_003980709.1| transcriptional activator protein IrlR 4 [Achromobacter xylosoxidans A8] gi|310762545|gb|ADP17994.1| transcriptional activator protein IrlR 4 [Achromobacter xylosoxidans A8] Length = 229 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+K LA + L N+ V V G G+ L + ++D ++LD+ L + GF Sbjct: 1 MKVLVIEDEKKLAEYLRRALTEHNYVVDVALDGVTGLHLVRESQYDLVLLDVMLPAMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL +R PV +L+ +ED+V+GL+ GADDY++KPF EL+AR+ A+ RRS Sbjct: 61 SVLAEIRKTS-RVPVLMLTARDKLEDRVKGLRDGADDYLAKPFALSELLARVLALGRRS- 118 Query: 121 GH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 GH AQ+++ L ++L + G R+ LT KE+ ++ LL ++ L++ Sbjct: 119 GHGQTETIAQNVLRIDGLELDLLRRRASRDGVRLDLTAKEFTLLALLMRKQGEVLSRLEL 178 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D +++V I +LR K+ + K + TV G GYVL Sbjct: 179 AEQVWDINFNSNTNVVEVAIRRLRGKV-DEPFDKKLLHTVRGMGYVL 224 >gi|298290746|ref|YP_003692685.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927257|gb|ADH88066.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 263 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ A + + V V GE+G+ L + +D +++D L G Sbjct: 38 MRLLIVEDDRDAADYLRKAFREAGHVVDVASDGEEGLMLAREGGYDVLLVDRMLPRRDGL 97 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR TP ILS + ++D+V GL++G DDY+ KP+ EL+AR+ A+ RR Sbjct: 98 ALIAELRGRGDKTPALILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEALARRGG 157 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + DL ++ A G I L +E++++E L +T+ M L +++ Sbjct: 158 PQAADTVYRVADLELDRLAHRCTRAGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLENVW 217 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D +P+ +IDV + +LR K+ + TV G GY++R+ + Sbjct: 218 DYHFDPQTNVIDVHVSRLRSKIDKGF-DPPLLHTVRGAGYIIRDGVR 263 >gi|227515346|ref|ZP_03945395.1| two component response regulator [Lactobacillus fermentum ATCC 14931] gi|227086260|gb|EEI21572.1| two component response regulator [Lactobacillus fermentum ATCC 14931] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 120/202 (59%), Gaps = 1/202 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL ED+K L+ ++ +++ ++V G++ ++L +D IILD+ + + G Sbjct: 1 MNILLAEDEKQLSRALVTAMQANGYHVDPAYNGQEAVDLAGQRAYDVIILDIMMPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ LR T V +L+ M+ I+DKV GL +GADDY++KPF+ +EL+AR+R++ RRS Sbjct: 61 EALKQLRQTGNKTYVIMLTAMAEIDDKVTGLDAGADDYLTKPFSLKELLARLRSLERRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ D++++ D + +E + I L+GKE +++ L + + L+ +D Sbjct: 121 DYQEDVLNFADITLDNDEQRLESH-NSISLSGKETKLLAYLMKNPGKAIESSILLDQGWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLS 202 DE + + ++I LR+KL Sbjct: 180 KDDEADETDLWIYISYLRQKLQ 201 >gi|187778164|ref|ZP_02994637.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC 15579] gi|187775092|gb|EDU38894.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 12/224 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G +GIE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIQLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 + +R + + +L+ ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR S Sbjct: 64 CKIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSAD 122 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 ++ S ++ G LS++ D + V+V G + +T E+ ++ L K L++E ++ + Sbjct: 123 NSTSNLIFDDGKLSIDYDKRVVKVNGKEVSITPNEFDILYALVSNKGKVLSREQLIDKIF 182 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++G D + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFNGYD----RTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222 >gi|153854770|ref|ZP_01996004.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814] gi|149752677|gb|EDM62608.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 126/230 (54%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+K +A +EL L+++ + V+ G+D ++ + D ILD+ L DI GF Sbjct: 5 MNILVVDDEKEIADVVELYLQNDQYKVFKFYNGQDALDCINSTKIDLAILDIMLPDIDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ +R K + PV +L+ + DK+ GL GADDYI KPFN ELVAR++A +RR Sbjct: 65 QILKQIR-QKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRCT 123 Query: 121 GHAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKEM 173 + + GD L +N + + LT E+ ++ LL + + ++E+ Sbjct: 124 QYNEGTKEEGDVLDFGGLLLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEEL 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 F ++ + + V I LR+K+S G ++I+TVWG GY + E Sbjct: 184 FEKVWHEKYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVEE 233 >gi|329896136|ref|ZP_08271349.1| two component transcriptional regulator, winged helix family [gamma proteobacterium IMCC3088] gi|328921955|gb|EGG29320.1| two component transcriptional regulator, winged helix family [gamma proteobacterium IMCC3088] Length = 214 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/216 (33%), Positives = 120/216 (55%), Gaps = 5/216 (2%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 +ED+ +LA + L+ E F V D G K D ++LDLGL D+ G ++L + Sbjct: 1 MEDEHSLAQGVVSGLEREGFVVDWVDSGRLAETAVKADPPDIMVLDLGLGDMDGLDLLAS 60 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 +R K P+ IL+ ++DKV+GL +GADDY++KPF+ EL AR+R + RR + S Sbjct: 61 IRQKKHRFPILILTARGEVDDKVKGLDAGADDYMAKPFDFLELCARLRVLERRLGTASTS 120 Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185 I ++ ++++ VEV G + L +EY +++ L + +T++ + LY DE Sbjct: 121 TISISNVVLHINTHQVEVGGKDLDLPRREYMLLKCLMENQGRVVTRDQLESRLYHWGDEI 180 Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++V + LRKKL +A +I+T+ G GY + Sbjct: 181 SSNALEVHVHHLRKKLPDA-----FIKTIRGLGYTV 211 >gi|289643275|ref|ZP_06475400.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506915|gb|EFD27889.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 253 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ F+V G++ + + D ++LD+ L+DI GFE Sbjct: 13 RVLVVDDEANITDLVRMSLRFHGFDVVTATCGQEAVAAVAEAKPDLMVLDVLLSDIDGFE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR PV L+ DK+ GL G DDY++KPF+ +ELVAR+RA++RR+R Sbjct: 73 VCRRLRDVGTDVPVIFLTARDRHADKIAGLTCGGDDYVTKPFSVDELVARVRAVLRRTRR 132 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + D+ +N D V GH I L+ E++++ L L++ L+ Sbjct: 133 DRPSAAAQTLAFADVVLNEDTHEVARAGHPIDLSPTEFKLLRYLLANPRRVLSRVQILDA 192 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + ++D ++ LR+KL A G I T G GY+L Sbjct: 193 VWNYDFDGAYTVVDQYVSYLRRKL--APYGPPLIHTQRGFGYML 234 >gi|282861156|ref|ZP_06270221.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282563814|gb|EFB69351.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 220 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 129/222 (58%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E F V V G +G+ L +D ++LD+ L + G+ Sbjct: 1 MRLLIVEDEKRLAVSLAKGLTAEGFAVDVVHDGLEGLHLAGQGGYDLVVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVARIRA++RR Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIRALLRRRG 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + S ++T G L ++ A+ V + LT KE+ ++E L++R ++K L H++ Sbjct: 121 GGSASPVLTAGTLRLDTAARRVHRGEDEVTLTAKEFAVLEQLAVRAGEVVSKADILEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + I++V+I LR+KL AA I TV G GY L Sbjct: 181 DFAYDGDPNIVEVYISTLRRKLGAAA-----IRTVRGAGYRL 217 >gi|269219051|ref|ZP_06162905.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269212162|gb|EEZ78502.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 227 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ++A + L+L+SE F V V G + + L + D ++LD+ L + G Sbjct: 4 RILVVDDDPSIAEMLALLLESEGFEVSVCATGNNALPLFRADRPDLVLLDVMLPGLDGVS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ ++S + D + GL++GADDY++KPF L+AR++A +RR Sbjct: 64 VCRLIR-EESDVPIIMMSARTDSVDVIAGLEAGADDYVTKPFENSVLLARVKARLRRQEP 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L V+ DL+++L A V+ G +HLT E++++ +L+ + ++E L ++ Sbjct: 123 EHEVLRVS-DLTIDLKAHQVQRAGKVLHLTPLEFELLSVLARKPWQVFSREELLEQVWGY 181 Query: 182 RDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V I +LR K+ + + TV G GY Sbjct: 182 RQSSHDPRVVNVHIQRLRSKVEHDPDHPEVVLTVRGVGY 220 >gi|255527946|ref|ZP_05394788.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255508373|gb|EET84771.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 217 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED+ +++ I+L L N+ GE+ ++ + FD I+LD+ L I GF Sbjct: 2 IKILVVEDELPISNLIKLNLNMANYECKTAFNGEEALKEIENDSFDLILLDVMLPKIDGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L ++ + PV L+ +S+ DKV GL++GADDYI+KPF EL+ARI ++R Sbjct: 62 TLLE--KIKPLGIPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYN 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++I D+ +NL+ T G + LT KE++++ +L KN LT+E + ++ Sbjct: 120 KNT-NVINFEDVEINLEEMTARKAGEAVELTLKEFELLVVLVQNKNVVLTREKLIEKIWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ID I KLRKKL K+ I+TV+ GY L Sbjct: 179 YDYVGETRTIDNHIQKLRKKLQ----WKDKIKTVFKLGYRL 215 >gi|160932717|ref|ZP_02080106.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753] gi|156867791|gb|EDO61163.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753] Length = 219 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 125/220 (56%), Gaps = 7/220 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ ++ I L + G + + + + EFD I+LD+ L + GF+ Sbjct: 3 KILIVEDDQTISKLIAASLSISGYESVPCFDGNEAVHMVRNEEFDLILLDIMLPGLDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+ +R + TPV L+ M + D+V+GL+SGA+DYI KPF EL+ARI ++RR Sbjct: 63 VMEKIR--ETGTPVIFLTAMGDVSDRVKGLKSGAEDYIVKPFEPLELLARIEIVLRRFNR 120 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++L D++VN++ ++V I LT KEY ++ L +N L+++ L +++ Sbjct: 121 EQKNLSFR-DITVNMEERSVRRGSEIIDLTPKEYDLLVLFLKHQNVALSRDKILMDVWEC 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +D + +LRKKL G ++ ++TV+ GY L Sbjct: 180 SANIETRTVDNHVQRLRKKL----GLEDCLKTVFKVGYRL 215 >gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ A + +L+ E F V G++ +E D ++LDL L + G + Sbjct: 3 RVLIVEDEESFADPLAFLLRKEGFTAAVATTGQEALEEFDRNGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + + PV +++ S DKV GL+ GADDY++KP++ EL+AR+RA++RR G Sbjct: 63 VCKQLR-QRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRG-G 120 Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+ ++ G + ++++ V V G + L KE+ ++E L LT+ ++ Sbjct: 121 EAEDMLPQVLEAGPVRMDVERHVVTVSGEEVSLPLKEFDLLEYLLRNVGRVLTRGQLIDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR KL Y+ TV G GY Sbjct: 181 VWGADYVGDTKTLDVHVKRLRSKLEPDPAEPRYLVTVRGLGY 222 >gi|53717517|ref|YP_105500.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|53722482|ref|YP_111467.1| two-component response regulator [Burkholderia pseudomallei K96243] gi|67640031|ref|ZP_00438853.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|76819653|ref|YP_335649.1| two component response regulator [Burkholderia pseudomallei 1710b] gi|124382891|ref|YP_001024486.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126443643|ref|YP_001063069.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126447886|ref|YP_001078807.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126457711|ref|YP_001076011.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|167002751|ref|ZP_02268541.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|167744626|ref|ZP_02417400.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167820246|ref|ZP_02451926.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167828621|ref|ZP_02460092.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167850081|ref|ZP_02475589.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167898689|ref|ZP_02486090.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167907033|ref|ZP_02494238.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167915377|ref|ZP_02502468.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167923219|ref|ZP_02510310.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|217425234|ref|ZP_03456729.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|254174447|ref|ZP_04881109.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254185252|ref|ZP_04891841.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254186777|ref|ZP_04893293.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254194369|ref|ZP_04900801.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254204224|ref|ZP_04910583.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254209196|ref|ZP_04915543.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254264284|ref|ZP_04955149.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254301543|ref|ZP_04968987.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|254355518|ref|ZP_04971798.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|52212896|emb|CAH38932.1| putative two-component response regulator [Burkholderia pseudomallei K96243] gi|52423487|gb|AAU47057.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76584126|gb|ABA53600.1| two component response regulator [Burkholderia pseudomallei 1710b] gi|124290911|gb|ABN00181.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126223134|gb|ABN86639.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126231479|gb|ABN94892.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|126240740|gb|ABO03852.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|147745108|gb|EDK52189.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147750419|gb|EDK57489.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148023611|gb|EDK82673.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|157811217|gb|EDO88387.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157934461|gb|EDO90131.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|160695493|gb|EDP85463.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|169651120|gb|EDS83813.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|184215844|gb|EDU12825.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217391839|gb|EEC31866.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|238520671|gb|EEP84129.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|243061632|gb|EES43818.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254215286|gb|EET04671.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 219 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L ++ ++ + +D I+LDL L D G Sbjct: 1 MRVLLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLILLDLLLPDGRGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR LR + PV IL+ + + +++ GL +GADDY+ KPF+ EL AR+ A+ RR Sbjct: 61 DFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ L+ G+L+V++ A++V G R+ LT E+ ++E L L+K LY Sbjct: 121 GNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DE I+V + +LRKKL G IETV G GY LR + Sbjct: 181 FSDEVGSNTIEVHVSRLRKKL-----GAELIETVRGLGYRLRRD 219 >gi|332160894|ref|YP_004297471.1| two-component regulatory protein response regulator KdpE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604799|emb|CBY26297.1| DNA-binding response regulator KdpE [Yersinia enterocolitica subsp. palearctica Y11] gi|325665124|gb|ADZ41768.1| two-component regulatory protein response regulator KdpE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862950|emb|CBX73085.1| KDP operon transcriptional regulatory protein kdpE [Yersinia enterocolitica W22703] Length = 229 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 3/219 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K + + + L+SE + V+ ++ + G+ + D IILDLGL D G Sbjct: 8 ILIVEDEKEIRRFVRIALESEGWRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLTY 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ LR S P+ +LS SS EDKV L +GADDY+SKPF EL+AR+R +RR G Sbjct: 68 IQDLRQWS-SIPIIVLSARSSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHSGG 126 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +Q LI D+SVNL + V G +HLT E++++ L +T+ LN ++ Sbjct: 127 SQESPLINFSDISVNLINRQVTRAGIDLHLTPIEFRLLSALLANAGKVITQRQLLNQVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++ LR+KL ++ T G GY Sbjct: 187 PNYVEHSHYLRIYMGHLRQKLETDPTRPKHLLTETGVGY 225 >gi|121597839|ref|YP_990168.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|134284304|ref|ZP_01770993.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|237508768|ref|ZP_04521483.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242310946|ref|ZP_04809963.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|121225637|gb|ABM49168.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|134244344|gb|EBA44453.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|235000973|gb|EEP50397.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242134185|gb|EES20588.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] Length = 232 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L ++ ++ + +D I+LDL L D G Sbjct: 14 MRVLLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLILLDLLLPDGRGL 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR LR + PV IL+ + + +++ GL +GADDY+ KPF+ EL AR+ A+ RR Sbjct: 74 DFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYS 133 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G+ L+ G+L+V++ A++V G R+ LT E+ ++E L L+K LY Sbjct: 134 GNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYS 193 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 DE I+V + +LRKKL G IETV G GY LR + Sbjct: 194 FSDEVGSNTIEVHVSRLRKKL-----GAELIETVRGLGYRLRRD 232 >gi|17547654|ref|NP_521056.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429958|emb|CAD16642.1| putative response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 235 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL+ED+ LA + L F V + DG+ F EFDA++LDL L Sbjct: 1 MRILLVEDEGELAAWLARALAQSGF---VVERAADGLAAEAFLASGEFDAVVLDLRLPRK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VL +R TPV IL+ +++++VRGL +GADD+++KPF EL AR+ A++R Sbjct: 58 DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG A + G L + K + G + LT +E+ + L + ++K + Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ + ++V + +LRKKL AG I TV G GY+L A Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGSGVQIVTVRGLGYLLEAEA 222 >gi|315170598|gb|EFU14615.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] Length = 230 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD ++A + L+ + V + G+ G+E FD IILD+ L + GFE+ Sbjct: 5 VLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMDGFEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 RA+R K TP+ I+S DK+RGL GADDYI KPF+ ELVAR +A + R + Sbjct: 65 CRAIRKKK-QTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 L+ +++V+ A V V + + T KEY+++ L N KE Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVVVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183 Query: 178 LY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ D D EV + V I ++R+KL A + IET+WG GY Sbjct: 184 VWGFDALDT-EVSTVVVHIKRIREKLKKANLSDSPIETLWGSGY 226 >gi|296115872|ref|ZP_06834496.1| two component response regulator KdpE [Gluconacetobacter hansenii ATCC 23769] gi|295977560|gb|EFG84314.1| two component response regulator KdpE [Gluconacetobacter hansenii ATCC 23769] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 14/231 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L +++ ++ + V ED ++D ++LDLGL D G Sbjct: 1 MRILIVEDEHDLGAAVQERVRLDGHAVDWFMTLEDARAAIATVDYDFMLLDLGLPDGNGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 ++LR +R + I + I D++ GL GADDYI KP++ ELVARI A+ R Sbjct: 61 DLLRDIRRTSSDIAILITTAEDQISDRIAGLSEGADDYIVKPYDLNELVARIAAVARRYA 120 Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 R RGH + G+++++ ++++V G + LT +E+ ++ELLS +++ Sbjct: 121 APRQRGHCR----IGEIAIDRESRSVSRDGRVLDLTAREWAIMELLSRNPGRIYSRQQID 176 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 LY + E ++VFI +LR+K+ N I T+ GRGY L E Sbjct: 177 TVLYALDQDVESNTVEVFISRLRRKVGNTT-----IRTIRGRGYCLGEKGN 222 >gi|213965336|ref|ZP_03393532.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium amycolatum SK46] gi|213951952|gb|EEB63338.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium amycolatum SK46] Length = 247 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD A+A ++ + LK+ + V + ++ DA++LDLGL D+ G E Sbjct: 19 KILIVEDDVAMARTVLVSLKARGYEPRVAQTATRALAAVSEWKPDAVLLDLGLPDVSGLE 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR+LR PV I+S K+ L GADDY++KPF+ EL+AR+R+ +RR+ Sbjct: 79 VLRSLRRWS-DIPVLIVSARHDEAGKINALNEGADDYVTKPFSMGELLARLRSTMRRASK 137 Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G L V+L + V V +HLT +E+ ++ L + +TK L Sbjct: 138 VVVEEVPKVASADGHLMVDLAKRQVLVADELVHLTPREWDILVYLVQHRGELVTKLELLK 197 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + E E + V+I +LR K+ Y+ T G GY Sbjct: 198 AVWGDQYEKETNYLRVYISQLRHKIEPQQAHNKYLRTEVGVGY 240 >gi|77359802|ref|YP_339377.1| response regulator (activator) in two-component regulatory [Pseudoalteromonas haloplanktis TAC125] gi|76874713|emb|CAI85934.1| response regulator (activator) in two-component regulatory [Pseudoalteromonas haloplanktis TAC125] Length = 230 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 11/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD L + L+ V V D G++ + D IILD+ L GF Sbjct: 3 KILLVEDDLGLQQLTKDYLEHNGLEVDVLDRGDEVFTYLESNPVDLIILDVMLPGKDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K +TP+ +L+ D+V GL+ GADDY+ KP L+ARI A++RR + Sbjct: 63 VCRQVR-DKYTTPILMLTAKGEDFDQVIGLELGADDYVIKPAEPRVLLARISALLRRGQP 121 Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 + A + GDL ++ ++ V++ G I LT E++++ LL+ L++E H+ Sbjct: 122 NLKATEELQFGDLFIDKTSRIVKLSGAEIVLTSHEFELLWLLASNAGEVLSREHVHQHMI 181 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 YDG D + +DV + ++RKKL + + I+TVWG+GY+ +A D Sbjct: 182 GRQYDGLD----RTVDVRVSRIRKKLGDNSDKPYRIKTVWGQGYLFVSDAWD 229 >gi|296444493|ref|ZP_06886458.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296258140|gb|EFH05202.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 220 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD+ +A I L + V GE+ L +F A++LDLGL + G Sbjct: 1 MRILLVEDDERIAGDIARALVEAGYVVETIGNGEEAWFLGDTEDFAAVLLDLGLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL R +TPV LS S ++V+G+ +GADDY+ KPF EEL+AR+R+++RRS Sbjct: 61 TVLERWREQGRNTPVLALSARGSWSERVQGIDAGADDYLPKPFRMEELMARLRSLIRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S+ G +S++ + +++ + +T EY++I L R+ + + H+Y Sbjct: 121 GRASSVTRNGRVSLDERSMQIKLGDAPVEMTAIEYRLIAYLMHRRGEVVAQSELAEHIY- 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 G D+ + I+V I ++RKK+ G +IET G GY++ Sbjct: 180 GHDQQQSNAIEVLIGRVRKKI-----GAGFIETRRGFGYLV 215 >gi|291531321|emb|CBK96906.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum 70/3] Length = 227 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L ED+ ++A ++ +L N+ V G D ++ + ++D IILD+ + G Sbjct: 1 MKLLFAEDEVSMAEAVTDILTYHNYTVDTVYDGADALDYARAEQYDGIILDIMMPKKSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR +TP+ +L+ + +ED++ GL GADDY+ KPF EL++R+RA++RR Sbjct: 61 EVLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRRKD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G++S+NL + ++ I L EY+++ELL L K L+ + L ++ Sbjct: 121 RFTPDIMTFGNVSLNLSSCELKGPLQSIVLPKIEYKLMELLMLNKGIYLSTDDILVKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + V+I +RK+L+ A G I GY L Sbjct: 181 YESDAESGAVWVYISYVRKRLA-AIGADIEIRAKRSVGYTL 220 >gi|254490751|ref|ZP_05103934.1| response regulator receiver domain protein [Methylophaga thiooxidans DMS010] gi|224463923|gb|EEF80189.1| response regulator receiver domain protein [Methylophaga thiooxydans DMS010] Length = 234 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDDK L + ++L F V + G+ G+ +FD I+LD+ L I G+ Sbjct: 10 RILIIEDDKILNKQLRVLLDGAGFEVTQSYDGDAGLLTAVSDQFDLILLDVALPGIDGYN 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR ++ TPV +L+ + E+++ GL++GADDY+SKPFN EL+ RI AI+RRS Sbjct: 70 VLKVLRQSR-ETPVIMLTAHGAEEERIIGLRNGADDYLSKPFNLTELLLRIEAILRRSLR 128 Query: 122 HAQSLIVTGDLS---VNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + ++ + LD T EV G +I T +++++ +L + TL+K Sbjct: 129 QTKPEVSVSHMNRSGLQLDKTTQEVYFDGKKITFTPLQFKLLWILMQHPSQTLSKPQLYR 188 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +D+ + ++R+KL A + ++TV G GY+L Sbjct: 189 LVLERDFSRYDRSLDMHMSRVRRKLVAAGMPADRLQTVHGTGYIL 233 >gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++AI+RRS Sbjct: 63 VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEF 121 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + G+L + DA + G + LT +E++++ L+ +T+E Sbjct: 122 AVDTQENEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232 >gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 232 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 2/227 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED++++ I L L + + V GE+ ++ K + D ++LD+ L I GF Sbjct: 6 IKILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKLKMLDPDIVVLDIMLPGIDGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + + T V +L+ DK+ GL+ GADDYI KPFN EL ARI+A++RR Sbjct: 66 EVCQHICATMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAVLRRRN 125 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++ ++ G L +++ A + I LT E+ +++ + L + LN + Sbjct: 126 GPKETKQVLNCGKLCLDITANKLFKDELEIELTPNEFALLKFFMENQGKALKRYEILNAV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + K +DV I +LR+K+ + +YI+TVWG GY ++ + Sbjct: 186 WGENYFGDTKTLDVHIRRLREKIEDHPSYPDYIKTVWGSGYRWQQES 232 >gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18] gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 121/217 (55%), Gaps = 4/217 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ALA I L+L E FN + G E D ++LDL L + G EV Sbjct: 9 ILVVDDDDALAEMIGLVLAQEGFNAVFCENGARAFETFMRSTPDLVLLDLMLPGMNGIEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + + P+ +L+ S ED V+GL++GADDYI+KPF EL+ARIR + R R Sbjct: 69 CQQIRRSS-NVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRL-RPRES 126 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 Q ++ GD+ +++D +TV+ + +T E+ ++ L L+++ L+ ++ G Sbjct: 127 RQLVVSIGDIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVW-GY 185 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++V + +LR K + G +I+TV G GY Sbjct: 186 TDVSDSLVNVHVQRLRAKF-DELGADRFIQTVRGVGY 221 >gi|260662341|ref|ZP_05863236.1| response regulator [Lactobacillus fermentum 28-3-CHN] gi|260553032|gb|EEX25975.1| response regulator [Lactobacillus fermentum 28-3-CHN] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 121/202 (59%), Gaps = 1/202 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL ED+K L+ ++ +++ ++V G++ ++L +D IILD+ + + G Sbjct: 1 MNILLAEDEKQLSRALVTAMQATGYHVDPAYNGQEAVDLAGQRAYDVIILDIMMPKLNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ LR T V +L+ M+ I+DKV GL++GADDY++KPF+ +EL+AR+R++ RRS Sbjct: 61 EALKQLRQTGNKTYVIMLTAMAEIDDKVTGLEAGADDYLTKPFSLKELLARLRSLERRSE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + ++ D++++ D + +E + I L+GKE +++ L + + L+ +D Sbjct: 121 DYQEDVLNFADITLDNDEQRLESH-NSISLSGKETKLLAYLMKNPGKGIESSILLDQGWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLS 202 DE + + ++I LR+KL Sbjct: 180 KDDEADETDLWIYISYLRQKLQ 201 >gi|227889684|ref|ZP_04007489.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|227849827|gb|EEJ59913.1| response regulator [Lactobacillus johnsonii ATCC 33200] Length = 236 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 19/233 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 ++IL++EDD ++A +++ E ++V D+ +DG+E + ++ +D + LDL L Sbjct: 2 LKILMVEDDNSVAEMMKMFFSKEQWDV---DIAKDGVEAVEMFKADPSSYDIVTLDLNLP 58 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 G EV + +R IS P+ +L+ S D++ GL GAD+Y++KPF+ L+ARI+A+ Sbjct: 59 KKDGIEVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKAL 118 Query: 116 VRRSR----GHAQSLI----VTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166 RRS HA + I VT L ++ D + V + LT KE+ ++ ++ ++ Sbjct: 119 YRRSHLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKQK 178 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ L ++ E + +D I KLR+KL A G ++TVWG GY Sbjct: 179 QVFSRDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGY 229 >gi|269839100|ref|YP_003323792.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269790830|gb|ACZ42970.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D+ + ++ +L + + V V GE+G+EL FDA++LDL + + G E Sbjct: 9 RVLVIDDEHEILRILKSVLTNAGYAVSVASSGEEGMELFGLQPFDAVLLDLRMPGLSGLE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V LR A+ P+ +LS M DKVR L +GADDY+ KPF EL+AR+RA +RR S Sbjct: 69 VCAWLR-ARSDVPIIVLSVMGEENDKVRALDTGADDYLVKPFGVAELLARLRAALRRAGS 127 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +G + ++ +GDL+++L+ + V V G + LT EY +++ L++ +T M L ++ Sbjct: 128 KGQPEMIVRSGDLTIDLERRAVYVAGQLVRLTPTEYDVLKCLAVHGGKVVTHRMLLREVW 187 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I ++R+KL + YI T G GY L Sbjct: 188 GSEQPADTSNLRYTITQIRRKLGDDPTHPRYILTEPGVGYRL 229 >gi|160893753|ref|ZP_02074537.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50] gi|156864738|gb|EDO58169.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50] Length = 238 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 125/235 (53%), Gaps = 23/235 (9%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIP 58 +IL+++DD+ +A I L L E Y T + DG L F EF + I+LD+ L + Sbjct: 5 KILIVDDDENIAELISLYLNKE---CYETQIAADGTSALEAFVEFAPNLILLDVMLPGMD 61 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G++V +R + + P+ +LS + DKV GL+ GADDYI KPF+ ELVAR+ A++RR Sbjct: 62 GYQVCTEIR-KQSNVPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRR 120 Query: 119 SRG--------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164 H + + +L VN+ TV ++G + + KE +++ L+ R Sbjct: 121 CNSRTDNSQNYNPTNADHIGTYVEYDNLVVNISNYTVTLEGKNLEMPPKELELLYFLASR 180 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 N T+E L+ L+ + + +DV I +LR+KL++ I TVWG GY Sbjct: 181 PNQVFTREQLLDKLWGYEYVGDTRTVDVHIKRLREKLTDKYNWS--IFTVWGIGY 233 >gi|109453254|gb|ABG34107.1| PhoP [Salmonella enterica subsp. enterica] Length = 213 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214 LY + E IDV + +LRKK+ A + I TV Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213 >gi|56708585|ref|YP_170481.1| two-component response regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|110671056|ref|YP_667613.1| two-component response regulator [Francisella tularensis subsp. tularensis FSC198] gi|118498037|ref|YP_899087.1| two-component response regulator [Francisella tularensis subsp. novicida U112] gi|134301461|ref|YP_001121429.1| two-component response regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|187931186|ref|YP_001891170.1| two-component response regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|194323262|ref|ZP_03057046.1| response regulator receiver domain protein [Francisella tularensis subsp. novicida FTE] gi|224457767|ref|ZP_03666240.1| two-component response regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|254368789|ref|ZP_04984802.1| two-component response regulator [Francisella tularensis subsp. holarctica FSC022] gi|254371214|ref|ZP_04987216.1| two-component response regulator [Francisella tularensis subsp. tularensis FSC033] gi|254373393|ref|ZP_04988881.1| two-component response regulator [Francisella tularensis subsp. novicida GA99-3549] gi|254374856|ref|ZP_04990337.1| hypothetical protein FTDG_01033 [Francisella novicida GA99-3548] gi|254875447|ref|ZP_05248157.1| two component system response regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|56605077|emb|CAG46190.1| Two-component response regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|110321389|emb|CAL09573.1| Two-component response regulator [Francisella tularensis subsp. tularensis FSC198] gi|118423943|gb|ABK90333.1| two-component response regulator [Francisella novicida U112] gi|134049238|gb|ABO46309.1| Two-component response regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|151569454|gb|EDN35108.1| two-component response regulator [Francisella tularensis subsp. tularensis FSC033] gi|151571119|gb|EDN36773.1| two-component response regulator [Francisella novicida GA99-3549] gi|151572575|gb|EDN38229.1| hypothetical protein FTDG_01033 [Francisella novicida GA99-3548] gi|157121710|gb|EDO65880.1| two-component response regulator [Francisella tularensis subsp. holarctica FSC022] gi|187712095|gb|ACD30392.1| two-component response regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|194322626|gb|EDX20106.1| response regulator receiver domain protein [Francisella tularensis subsp. novicida FTE] gi|254841446|gb|EET19882.1| two component system response regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|282159813|gb|ADA79204.1| Two-component response regulator [Francisella tularensis subsp. tularensis NE061598] gi|332678759|gb|AEE87888.1| DNA-binding response regulator [Francisella cf. novicida Fx1] Length = 228 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L + L+ E V + GE + +D ++LD+G+ G Sbjct: 1 MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 EVLR +R I P+ +L+ +ED+++GL GADDY++KPF +ELVARI+AI R Sbjct: 61 EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RS I GD S N ++TV G I ++ KE ++ +L + K L Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y E + ++V + LRKK++ N+I+T+ G GY ++++ Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYFVQKD 224 >gi|257875264|ref|ZP_05654917.1| response regulator [Enterococcus casseliflavus EC20] gi|257809430|gb|EEV38250.1| response regulator [Enterococcus casseliflavus EC20] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 LLIEDD + +E++L+ E++N G + + L + D I+LDLGL DI G E+ Sbjct: 5 FLLIEDDSNIVDFMEVVLQREHYNFTSVGTGMEALMLLQEETIDFILLDLGLPDIDGMEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ +R +++TP+ ++S +DKV+ L GADDY++KPF+ EL ARIR +R Sbjct: 65 LKIIR-KRMNTPIIVISARKDEQDKVQALDLGADDYVTKPFSTNELFARIRTALRHKETT 123 Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S ++V +L+++ + K + + IHLT EY+++ ++ +T + + ++ Sbjct: 124 SFSSSPILVNKELTIDFEKKILYKNQNEIHLTKNEYRIMAVMFKNLGKVVTYDTLTSEVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 G + + + V I +RKK+ Y+ T G GY LRE Sbjct: 184 -GPFAADAQTLRVNISNIRKKIETNTLQPEYLITEIGVGYRLRE 226 >gi|154503747|ref|ZP_02040807.1| hypothetical protein RUMGNA_01571 [Ruminococcus gnavus ATCC 29149] gi|153795847|gb|EDN78267.1| hypothetical protein RUMGNA_01571 [Ruminococcus gnavus ATCC 29149] Length = 237 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 127/235 (54%), Gaps = 15/235 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K + + +LK +++ V D G++G+ L D IILDLGL D+ G ++ Sbjct: 6 VLIIEDEKNIQTFVGKILKKQDYRVLYADCGKEGLNLIHSQCPDVIILDLGLPDMNGNDI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ +R STP+ ++S S+ ++KV L GADDYI+KPF EL+ARIR +R H Sbjct: 66 IQEVRTW-TSTPIIVISARSAEKEKVLALDQGADDYITKPFGTSELLARIRTSLR----H 120 Query: 123 AQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + L T DL ++ + + + +HLT EY+++ L+ +T Sbjct: 121 SNRLYTTDSLYIRPYRYEDLVLDFSKRELTLDKQPVHLTPIEYKIVSYLAQNSGKVMTYA 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +++++ + + KI+ V + +R+KL YI T G GY ++E++ + Sbjct: 181 AIISNVWGPYADDDNKILRVNMANIRRKLEKDPAQPKYIFTEVGVGYRMQEDSSE 235 >gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1] gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1] Length = 243 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 8/231 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++++ +E+ E G +G + K E+D +ILD L + G Sbjct: 10 MKVLVVEDNESVTSMLEMFFIKEGIQGEFVHDGAEGYQRYKEGEWDLVILDWMLPGMDGV 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R +R + P+ +L+ S D+V GL+ GADDY++KPF+ L+ARIRA+ RR + Sbjct: 70 TICRKIREERTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARIRAVTRRYQ 129 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMF 174 G + I T D ++ + + V ++G + +LT KE+ ++ LS ++E Sbjct: 130 GEKNNTAESTDISTTDFQISKETREVLLKGVPLTNLTPKEFDLLYYLSQHPRQVFSREQL 189 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ + + +DV I +LR K+ + K Y+ TVWG GY E A Sbjct: 190 LERVWGYDFYGDERTVDVHIKRLRNKI--GSNEKPYLHTVWGVGYKFDETA 238 >gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ ++ + L+ E F V G +E+ K D +ILD+ L ++ GFEV Sbjct: 6 ILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSPPDLMILDVMLPELDGFEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ +L+ DK+ GL+ GADDY++KPFN ELVAR++AI+RR+R Sbjct: 66 CKQLRAQNDPLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRRTRHQ 125 Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q++I G++ V+ V + I L +E++++ +L+ L++E L + Sbjct: 126 THEDQNVIRIGNIVVDPARYEVRNGDYLIPLRAQEFEVLCVLARNAGRVLSREQLLEKAW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LR+KL+++ IETV G GY L Sbjct: 186 GFDFYGQTRTVDVHIAQLRRKLADSG---VTIETVTGVGYKL 224 >gi|307332348|ref|ZP_07611420.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306881995|gb|EFN13109.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 239 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 1/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+ +DD A+ S+E L+ F+V + D G + + D ++LD+ + D+ G E Sbjct: 8 RVLVTDDDAAIRRSLERGLRLNGFSVTLADGGHAALAAVRDGAPDVVVLDISMPDLSGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RALR PV +LS + + D+V GLQ+G DDY+ KPF +ELV R+ A++RR Sbjct: 68 VCRALRGDGNDVPVLMLSALDEVSDRVAGLQAGGDDYLVKPFALQELVLRLHALLRRRPP 127 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + G L + +A+ + G + LT +E+++++ + LT++ L+ ++ Sbjct: 128 AATDRVRAGALEMAPEAQGAWLDGTPLRLTRREFELLDTFARNAGIVLTRDQLLDRVWGY 187 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 E +D F+ LR+KL A G + TV G G+VLR + E Sbjct: 188 DFEVRTDAVDTFVSYLRRKL-EAGGRPRMLHTVRGVGFVLRPSGPPE 233 >gi|293189340|ref|ZP_06608063.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus F0309] gi|292821803|gb|EFF80739.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus F0309] Length = 225 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD A++ + L E ++V G + L D ++LDLGL D+ G +V Sbjct: 4 VLLVEDDPAISEPLARALGREGYDVRAHATGAEA--LADVRGVDLVVLDLGLPDMDGLDV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 62 AREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQAAE 121 Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A+ + D+ +++ A V + LT KE+ ++ +L + + ++ + ++ Sbjct: 122 PAEGELRAQDIRMDVAAHRAFVGDVELSLTAKEFDLLRVLLREAGSVVARDTLMREVWGS 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 K +D+ + LR+KL + A +YI TV G G+ ENA+ Sbjct: 182 DPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRF-ENAR 225 >gi|289568536|ref|ZP_06448763.1| LOW QUALITY PROTEIN: two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T17] gi|289542290|gb|EFD45938.1| LOW QUALITY PROTEIN: two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T17] Length = 237 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 105/206 (50%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL++ED+ + + L E V G + ++DA++LD+ L I GF Sbjct: 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV LR ++ TPV +L+ ++ D++ GL GADDY++KPFN +EL AR+RA+ RR Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ V I L+ KE+ ++E L R T+ L +D Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAG 206 E I+DV+I LR K+ G Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPFG 228 >gi|300785656|ref|YP_003765947.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|7339508|emb|CAB82844.1| putative response regulator [Amycolatopsis mediterranei] gi|14530100|emb|CAC42209.1| rA protein [Amycolatopsis mediterranei] gi|299795170|gb|ADJ45545.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 224 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 113/217 (52%), Gaps = 1/217 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLIEDD + +EL L +V + GEDG+ + + ++LDL L I GFEV Sbjct: 4 ILLIEDDPLVRRGLELALGRHGHDVRTAETGEDGLRQFRSAPPELVVLDLMLPGIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A PV +L+ D V GL +GADDY+ KP L ARIRA++RR+ Sbjct: 64 CRGIRAAG-PVPVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVLRRAASS 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + V DL ++ + TV +G + LT E +++ LS L+++ L +++ Sbjct: 123 PDGVRVHRDLRIDTTSLTVSSRGEPVSLTPTELRLLLTLSRAPGRVLSRQQLLEEVWEHD 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++D + +LR K+ Y++TV G GY Sbjct: 183 YLGDSRLVDNCVQRLRAKIEADPAAPEYVQTVRGFGY 219 >gi|51891869|ref|YP_074560.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855558|dbj|BAD39716.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 231 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 2/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +DD +E L +E F V G++ ++L D +ILD+ + + GF Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R A + P+ +L+ DKV G + GADDY++KPF+ ELV R+ AI+RR Sbjct: 66 VCGRIRAAS-AVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPT 124 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S + G L +N +TV V LT +E+ ++ L++ T+E L ++ Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G + + V I +LR+K+ + +I+TVWG GY Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGY 223 >gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] Length = 246 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + +E+ + + I++D+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL +N D+ V G I L+ EY+++ L + L+K LNH++ Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGMPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223 + I++ +I LRKK +++ +G IET G GY++RE Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKPQKVVPLIETKRGIGYMIRE 240 >gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V V G + +E K+ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALE--KWKEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G+L + + + V G I LT +E+ + +L ++ L Sbjct: 119 KKEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] Length = 232 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +D+ +A IE+ L+ E ++V GE+ + + + D +ILD+ + + G+ Sbjct: 4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVILDIMMPKMDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R K P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 64 EVTRQIR-TKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++S + G + +N + +TV+V G +I LT KE+ ++ LL+ E Sbjct: 123 TLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ + V I LRKKL I+TVWG GY Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|302337766|ref|YP_003802972.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301634951|gb|ADK80378.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 231 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+ L ++E L+ E + V + G G + D IILD+ L GF V Sbjct: 4 ILIIEDEPGLQMTLEDRLRVEGYEVTLAGDGLRGEAAALTGQHDLIILDIMLPGRDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR A I+TPV +L+ S D V GL+ GADDY++KPF+ L+AR+ A++RR+ Sbjct: 64 CSRLRKAGINTPVLMLTARGSDIDIVAGLRQGADDYMAKPFDMNVLLARVEALLRRATMA 123 Query: 123 AQSLIVTGDLS--------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +L G+ ++LD + + + + L+ +EY+++E L R N L+++ Sbjct: 124 SSALAEEGEQPRYQFGTFLLDLDKRELYLDDDPVLLSAQEYRLLEYLVRRPNKVLSRDQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ E + +DV + KLR+KL A + +I T+ GRGY Sbjct: 184 MDEVWSYSSEATSRTVDVHVAKLRQKLGETAIPR-HILTIRGRGY 227 >gi|3401948|dbj|BAA32131.1| Orf3 [Streptomyces griseus] Length = 224 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L I L+ F + L +D ++LD + Sbjct: 1 MRVLLVEDDDDLRDVIGAGLRDGGFAWDCASDWPEADVLLHLSAYDCVVLDRMVPSGDTL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L R A S PV L+ + S+++++RGL+SGADDY++KPF+ ELV R+R + RR+ Sbjct: 61 APLEGRRRAGWSVPVLCLTALDSLDERLRGLESGADDYLAKPFSMRELVLRVRGLSRRAS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + D+ +++ V G + L+ KEY +++ L + ++T +T+ L H +D Sbjct: 121 ARLPSFLGCADVVMDVARHEVRRGGVLLSLSPKEYAVLQQLLVHRDTVVTRTGLLEHCWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +P ++D + LR+KL G + TV G+G++L + Sbjct: 181 EMADPVSNVVDAVVAGLRRKL----GSPGLVHTVRGQGFLLSAD 220 >gi|333030607|ref|ZP_08458668.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332741204|gb|EGJ71686.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 225 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+K L+ ++ L + N+ E+G+E Y + I+LDL L D G Sbjct: 1 MKILIIEDEKTLSDNMMRYLTANNYRCEQAFTYEEGLEKISLYSYSCILLDLNLPDGDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +R KI + V I+S +++DK+RGL +GADDY++KPF+ EL RI A++RR Sbjct: 61 HLLEEIRNNKIDSGVIIISARGALDDKIRGLMTGADDYLAKPFSLPELSVRIYALLRRRL 120 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + + + + ++L KT +V G ++LT EY ++ L KN ++K HL Sbjct: 121 GTTSTNTLESNGIVIDLLGKTAKVNGESLNLTKTEYNLLLFLIANKNRVISKNAIAEHL- 179 Query: 180 DGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D ++ I I L+ KL+ + I TV+G GY E Sbjct: 180 -SGDMADMFNSHNFIYTHIKNLKAKLAQYNVDSS-IRTVYGTGYQWAE 225 >gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 123/229 (53%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ +A IEL L+ E + + G +E + + I+LD+ L + G E Sbjct: 5 RILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGWSLILLDVMLPRLSGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR +R +TPV +L+ +I DKV GL GA+DY++KPF EEL+ARIRA +R Sbjct: 65 VLRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLRTQLS 124 Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + G DL VN + ++ I LT +E+ ++ L +T+E L Sbjct: 125 TSGTHLDEGELTLADLYVNERTREIKRGETTIELTPREFDLLVYLLRHPEQVMTREQILE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 H++ + ++DV+I +R+KL I TV G GYV++E+ Sbjct: 185 HVWGFDYFGDTNVVDVYIRYMRQKLDKPFDAP-LIHTVRGVGYVMKESV 232 >gi|327482737|gb|AEA86047.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri DSM 4166] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAI-ILDLGLTDI 57 MRILL+ED LA S+ L+ + V DL DGI +L E A+ ILD+GL + Sbjct: 1 MRILLVEDHPQLAESVAQALRGAGWTV---DLLHDGIAADLALASEDYALAILDVGLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF+VL LR + PV +L+ + D+V GL GADDY++KPF EL AR++A++R Sbjct: 58 DGFQVLARLRGRGKTLPVLMLTARGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G + G L +LDA+ + + LT +E ++E L R ++K+ Sbjct: 118 RSVGGGERQQRCGVLVYDLDARRFSLADEPLTLTSREQSVLEALIARPGRVMSKDQLAAQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ I++++ +LRKKL G I T G GY+L Sbjct: 178 VFGLDEDASADAIEIYVYRLRKKLE---GQPVRIVTFRGLGYML 218 >gi|308177887|ref|YP_003917293.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis Re117] gi|307745350|emb|CBT76322.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis Re117] Length = 226 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 15/225 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD+AL+ I ++L+++ F+ G +E + D ++LDL L I G + Sbjct: 4 RILVVDDDEALSEMIGIVLQNDGFDTSFCYEGSGALEAFRESNPDLVLLDLMLPGIDGIK 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + + A+ PV +L+ S D VRGL+SGADDY+ KPF ELVAR+RA +R + Sbjct: 64 VCKLIS-AESDVPVVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRPNET 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA + G++ T++V GHR + LT E+ ++ ++ + ++E Sbjct: 123 HAAETLQVGEV-------TIDVAGHRVTRGTDVVSLTPLEFDLLVTMARKPWQVFSREQL 175 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ R + ++++V + +LR K+ I+TV G GY Sbjct: 176 LEAVWGYRHAADTRLVNVHVQRLRSKIEIDPEKPQIIQTVRGVGY 220 >gi|307329229|ref|ZP_07608394.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885128|gb|EFN16149.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 236 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 20/236 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDI 57 MR+LL+EDD +A ++ +L F V GE+ ++ F ++LDLGL D Sbjct: 1 MRLLLVEDDNHVAAALSAILSRHGFEVTHARSGEEALQALLPDSGAPFGVVLLDLGLPDQ 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEV +R + +TPV +++ + + ++ GL GADDY+ KP++ EL+ARI A+ R Sbjct: 61 DGFEVCGKIR-KRTATPVIMVTARADVRSRIHGLNLGADDYVVKPYDTMELLARIHAVSR 119 Query: 118 RS----RGHA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165 R+ GH + G +++ L + V V G + LT KE+ ++ LL+ R Sbjct: 120 RTAPQDTGHGADEGPDGPHPPLRLGPVTIELPTRQVSVNGTTVSLTRKEFDLLALLAQRP 179 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++ ++ E + ++V + LR KL A IETV G GY L Sbjct: 180 GVVFRREQIISEVWRTSWEGTGRTLEVHVASLRSKLRMPA----LIETVRGVGYRL 231 >gi|167751597|ref|ZP_02423724.1| hypothetical protein EUBSIR_02598 [Eubacterium siraeum DSM 15702] gi|167655405|gb|EDR99534.1| hypothetical protein EUBSIR_02598 [Eubacterium siraeum DSM 15702] Length = 233 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD ++ + I LK+ ++ G I + D ++LDLGL DI G EV Sbjct: 6 ILVVEDDNSVKNLITTTLKAHDYRYLTAPNGATAILEASSHNPDIVLLDLGLPDIDGVEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ +R + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IKKIRTWS-NMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQRRLNMI 124 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ G L ++ A + +HLT EY+++ LLS LT Sbjct: 125 QNETAAEASVFTNGQLRIDYAAGCAYLGDDELHLTPIEYKLLCLLSRNIGKVLTHTFITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + ++ + VF+ LRKKL A YI+T G GY Sbjct: 185 NIWGSSWDNDIASLRVFMATLRKKLEKDADSPQYIQTHIGVGY 227 >gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104] gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22] gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322] gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200] gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2] gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5] gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96] gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704] gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1] gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1] gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6] gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis CH188] gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG] gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712] gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613] gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1] gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248] gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855] gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860] gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109] gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411] gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470] gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635] gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102] gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis] gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104] gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22] gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200] gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322] gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2] gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5] gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96] gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704] gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1] gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1] gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6] gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis CH188] gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG] gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712] gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613] gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1] gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411] gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109] gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860] gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855] gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248] gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102] gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635] gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470] gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137] gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017] gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027] gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141] gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244] gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012] gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031] gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043] gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312] gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645] gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302] gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341] gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342] gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346] gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B] gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630] gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A] gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62] gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF] Length = 229 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+ +DDK + + + + +E + V G++ + +L + D +ILD+ + + G Sbjct: 1 MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ LR + P+ +L+ ++ DK++GL +GADDY++KPFN E++AR+++I+RRS Sbjct: 61 MEVVKELR-KESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N D+ V+ ++G I LT E+ ++ LL+ N + + Sbjct: 120 QMQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG+ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGY 224 >gi|320184189|gb|EFW59005.1| Two-component system response regulator QseB [Shigella flexneri CDC 796-83] Length = 219 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLILTTRDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219 >gi|115351289|ref|YP_773128.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|172060316|ref|YP_001807968.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115281277|gb|ABI86794.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] gi|171992833|gb|ACB63752.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 241 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 133/238 (55%), Gaps = 16/238 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD LA + L + F V V G+ + + +E +ILDL L ++ G E Sbjct: 9 RVLLIEDDDRLAQLVREYLDNYEFTVTVVRRGDLAVAAVREHEPALVILDLMLPNLDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V R +R A + PV IL+ + + D+V GL++GADDY++KP LVAR RA++R Sbjct: 69 VCRRIR-AFTNVPVLILTARADVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRARP 127 Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +R A ++ G+L+++ +TV +G + L E+ ++ +L+ T L+++ Sbjct: 128 AATETRAAAPDALIFGELTISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDI 187 Query: 175 LNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L L +DG D + +D I KLR++ +A+ + I+T+WGRGY+ +A DE Sbjct: 188 LKQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDE 241 >gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2] gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2] gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7] Length = 236 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +D+K + + ++ L+ E + V V GE+ + L +++ +ILDL + + G Sbjct: 4 IRILIADDEKEIRNLLKKYLERELYKVDVAVNGEEALRLFDKNQYNLLILDLMMPKVDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ DKV GL GADDYI+KPF+ E++AR+++++RR Sbjct: 64 EVCRRLR-NKTNIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRRFL 122 Query: 119 ---SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S G + ++ I DL+++L + + G + LT KE+++++ L+ TK Sbjct: 123 ILGSDGESLEKTSIKYKDLTIDLKKYIIVIGGEEVPLTAKEFELLKFLAAHNEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWESDYIEDDNTVMVHIRKLRKKIEVDPSNPQFIQTVWGIGY 228 >gi|255533329|ref|YP_003093701.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255346313|gb|ACU05639.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 234 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+ED+ L +I+L L+ E + V+ G+ +++ K F+ IILD+ L ++ GF Sbjct: 5 LRILLVEDEDHLLDAIKLNLELEGYKVHAVKDGKTALKVFKEERFNLIILDVMLPEMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V +R+ P+ L+ ++ ED+V GL+ GADDY+ KPFN EEL+ R+ +V+RS Sbjct: 65 QVCETIRLENTEVPILFLTAKNTSEDRVMGLKKGADDYLVKPFNLEELILRVGILVKRSM 124 Query: 121 GHAQSL-----IVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A L GD ++ ++ + + G + LT KE +++LL RKN +++E Sbjct: 125 -KADDLKEINSYKIGDKTIYFNSFELKQDDGVIVPLTKKETMLLKLLIERKNEAVSREQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L +++ P + ID FI RK Y ++ G GY Sbjct: 184 LETVWNYDVYPSTRTIDNFILTFRKYFEPDQKNPVYFHSIRGVGY 228 >gi|109453258|gb|ABG34109.1| PhoP [Salmonella enterica subsp. enterica] Length = 213 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHPLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214 LY + E IDV + +LRKK+ A + I TV Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213 >gi|300721189|ref|YP_003710457.1| response regulator in two-component regulatory system with CpxA regulates genes involved in folding/degrading periplasmic proteins OmpR family protein [Xenorhabdus nematophila ATCC 19061] gi|139522417|gb|ABO77646.1| CpxR [Xenorhabdus nematophila] gi|297627674|emb|CBJ88197.1| response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 230 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV + GE ++ D ++LD+ + G E Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVVIAHDGEQALQYID-SSIDLLLLDIMMPRKNGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELRQYH-QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q ++ L ++ + G + LTG E+ ++ LL+ +++E Sbjct: 121 SEQQADIGTPILEIDKLQLSPGRQEASFDGTILDLTGTEFTLLYLLAQHLGQVVSREHLS 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL N + +T+ GRGY++ Sbjct: 181 QEVLGKRLTPFDRAIDMHISNLRRKLPNRTDELPWFKTLRGRGYLM 226 >gi|330808062|ref|YP_004352524.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376170|gb|AEA67520.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 223 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G E+ +LD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKSTGLTVDVLHDGVAADLALSSEEYAVAVLDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGGLVYDLDTRRFTLDDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I++++ +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHAVAIVTFRGLGYLL 218 >gi|325522087|gb|EGD00757.1| two component heavy metal response transcriptional regulator [Burkholderia sp. TJI49] Length = 153 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/154 (42%), Positives = 98/154 (63%), Gaps = 1/154 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ +A + L ++ V V + G+DG+ L FD I+LD+ L ++ GF Sbjct: 1 MRILIVEDEPKMASYLRKGLMEASYTVDVAENGKDGLFLALHENFDLIVLDVMLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR K TPV +L+ ++EDKV GL+ GADDY+ KPF E +ARIR+++RRS Sbjct: 61 EVLKRLREQK-QTPVLLLTAREAVEDKVAGLELGADDYLPKPFAYAEFLARIRSLLRRSP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKE 154 +A+ +++ DL V+L + V RI LT +E Sbjct: 120 RNARDMLLIADLEVDLIKRRVRRGDTRIDLTAQE 153 >gi|298249773|ref|ZP_06973577.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547777|gb|EFH81644.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 245 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 125/234 (53%), Gaps = 14/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ LA + L+ + V+ + G ++L + ++ D ++LD L + G E Sbjct: 12 KILLVEDENDLAKIVMRELRGAGYEVFHAEDGLKALDLHERHQPDVVLLDWMLPRLNGLE 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR LR + +TPV +L+ S D+V GL+ GADDY++KPF+ ELVAR+RA++RR+ Sbjct: 72 VLRRLRQSS-ATPVLMLTARSEEADRVIGLEIGADDYLTKPFSMRELVARVRALLRRAEL 130 Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R A + G+L +N V + G + L+ E+ +++LL ++ Sbjct: 131 IKLTISADRRVASEELCLGNLRLNPQTHEVTLDGALLDLSPTEFALLQLLLRSPGRAFSR 190 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + L+ G + +D + +LRKKL + IET+WG GY L A Sbjct: 191 SYLIETLWSGTYIGGDRSVDNVVLRLRKKLGKLG---DSIETIWGIGYRLHNGA 241 >gi|293395031|ref|ZP_06639318.1| response regulator protein OmpR [Serratia odorifera DSM 4582] gi|291422438|gb|EFE95680.1| response regulator protein OmpR [Serratia odorifera DSM 4582] Length = 226 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + L +E FN + G+ G+E E+ A+ILD+ L D+ G Sbjct: 1 MKILLVDDDLELGTMLSEYLTAEGFNASLVLTGKAGVEGALSGEYTAMILDIMLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLR +R K P+ +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 61 DVLRDVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRFE 119 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ +V G+L++N ++ E +G LT E+ ++ELL LR + + L Sbjct: 120 EQPAAVDDDAPLVLGELALNPSTRSSEWRGQGFDLTASEFNLLELL-LRAPERVVSKDEL 178 Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + GR E + +DV I +R+KL+ G IETV GY +R Sbjct: 179 SEKGLGRPREAYDRSVDVHISNIRQKLAALTGNTLSIETVRSIGYRIR 226 >gi|307592366|ref|YP_003899957.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] gi|306986011|gb|ADN17891.1| response regulator receiver modulated diguanylate cyclase [Cyanothece sp. PCC 7822] Length = 813 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL IEDD++LA + +L +++ V + GE G L +D I+LD L + G Sbjct: 1 MKILCIEDDESLAKLLYQILVKQHYEVEIATDGETGWNLVTTSAYDLILLDWMLPKLTGI 60 Query: 61 EVLRALRV-------AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 E+ LR TP+ +++G+ + KV GL +GADDY+ KP + EEL+ARIR Sbjct: 61 ELCEKLRTRNGLIPSQNQDTPILLMTGLDTTTSKVMGLDAGADDYLVKPLDFEELLARIR 120 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR G ++ G L + ++ V +I L KEY+++EL + Sbjct: 121 ALLRRKSGERAPMLKWGQLCLCPNSGQVTYLEQKIQLAQKEYKLLELFLRNPEQIFSLSR 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ L+ P + I LR+KL AG + +ET++ GY L++ Sbjct: 181 LVDSLWSIEKTPTEGAVRAHIKGLRQKLKQ-AGVPDPLETIYKMGYRLKK 229 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 24/123 (19%) Query: 35 DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSG 94 +GIELC+ D LR R+ PV +LS + +E RG +G Sbjct: 575 NGIELCQVIRND----------------LRWNRL-----PVILLSVHTDLETVQRGFMAG 613 Query: 95 ADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS-VNLDAKTVEVQGHRIHLTGK 153 ADD++SKP EL+ R+R+ +++ + +I +L+ V+L K +E IHL + Sbjct: 614 ADDFLSKPVVASELLIRVRSRLKQRK--MWKIIEYDELTGVSLRRKALEDLTRAIHLAQR 671 Query: 154 EYQ 156 + Q Sbjct: 672 QGQ 674 >gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 290 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + V + GE+ +E+ + D ++LD+ L + GF V Sbjct: 28 ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPRLDGFAV 87 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDYI KPF+ +EL ARI I+RR G Sbjct: 88 CRRLR-AESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPG 146 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A Q ++ GDL V+ + + V G RI LT E+ ++ELL + + Sbjct: 147 SATAEIRDLPVGQGVMRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVPR 206 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 207 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256 >gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] Length = 246 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+ ++ + L F V G + +E+ + + I++D+ L DI GF V Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R I PV L+ +DK+ GL G DDY++KPF+ EE+VARIRAI+RR++ Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I DL +N D+ V G I L+ EY+++ L + L+K LNH++ Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223 + I++ +I LRKK +++ +G + IET G GY++RE Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIRE 240 >gi|225848698|ref|YP_002728861.1| two-component response regulator [Sulfurihydrogenibium azorense Az-Fu1] gi|225644366|gb|ACN99416.1| two-component response regulator [Sulfurihydrogenibium azorense Az-Fu1] Length = 223 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI----ELCKFYEFDAIILDLGLTD 56 +++++IEDDK LA + L FN+ V + ED + EL K +D +ILDL L Sbjct: 2 IKVIMIEDDKELAELLTQYLAK--FNISVKNF-EDPVKALQELEKNKNYDIMILDLSLPQ 58 Query: 57 IPGFEVLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G EV + +VAK P+ I S S DK+ L+ GADDY++KP+N ELVARI+A+ Sbjct: 59 MDGIEVCK--KVAKEEDIPIIISSARSDDTDKIVALEVGADDYLAKPYNPRELVARIQAV 116 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +RR ++ IV G+ ++ + T++ G ++LT E++++ +L K LT++ L Sbjct: 117 LRRKEKKPKT-IVCGEFELDEEGFTIKKNGEPLNLTSAEFELLSMLIKNKGRVLTRDYIL 175 Query: 176 N---HL-YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + HL YD D + +DV I ++RKK+ + YI +V G GY Sbjct: 176 DNTIHLNYDSID----RTVDVIIGRIRKKIGDDPKNPKYIISVRGLGY 219 >gi|104774697|ref|YP_619677.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514824|ref|YP_813730.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423778|emb|CAI98784.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094139|gb|ABJ59292.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 228 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DD + + + LK+E + G++ + +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IDVVKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +G ++ G L +N D+ V+ V+G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGY 224 >gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 229 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D++ + ++ L+ + + GE+G+ +D IILD+ L I G E Sbjct: 4 KILIIDDERIMVKGLKFSLEQDGYETDAAYDGEEGLNKALNEHYDLIILDIMLPKINGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R + S P+ +L+ DK+ GL+ GADDY++KPFN EL AR++AI RR Sbjct: 64 VCRQVR-EQSSVPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIFRRLDL 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S + +L++N + +TV V G +LT KE+ ++E+L + ++E L Sbjct: 123 ASPKKNDKYLKIKNLTINFENRTVLVDGRDANLTAKEFDLLEVLVNGRGKIFSREQLLET 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ +++ +DV I +LR+KL I T WG GY Sbjct: 183 VWKYDYLGDLRTVDVHIRRLREKLEKNPSQPELIFTKWGVGY 224 >gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC 700633] gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC 700633] Length = 238 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E F V GE+G+ + D +ILDL L I G E Sbjct: 3 KILVVDDEKPISDIVKFSLSKEGFEVVTAFDGEEGLAVFSAENPDLVILDLMLPKIEGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 63 VCREIRKTS-NVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQHI 121 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + IV G L ++ DA V +G I LT +E++++ L+ +T+E Sbjct: 122 SPTEPDEEKSANEIVLGSLIIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + +I T G GY ++ Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYIK 230 >gi|257482938|ref|ZP_05636979.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011818|gb|EGH91874.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 224 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + + + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGMTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +ST V +++ +E+KV+GL+ GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 EVLSRLR-KTVSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220 >gi|254501423|ref|ZP_05113574.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222437494|gb|EEE44173.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 227 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD+ L + L+ E V + TD G++ + ++D +ILD ++ + G Sbjct: 1 MRILLLEDDRQLGPWVAGGLREEGHVVDHFTD-GKEALIAAMGQDYDVLILDRMVSGLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL++LR ++ TP L+ + ++ +V G +G DDY++KPF EL AR+ A+ RR Sbjct: 60 LSVLKSLRASEDPTPALFLTALGEVDARVEGFDAGGDDYLTKPFAFVELSARVNALGRRR 119 Query: 120 RGHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + S I G LS++L A+ E QG I L KE++++E R +T+ M Sbjct: 120 DSNGTSTIEPTTLRYGVLSLDLLARRCERQGQVIDLMAKEFKLLEYFMRRPGRLVTRTML 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++D +P +++ I +LR K+ I T G GYV Sbjct: 180 LEQVWDMSFDPTTSVVETHISRLRSKIDKPF-DDELIRTRRGEGYVF 225 >gi|187776724|ref|ZP_02993197.1| hypothetical protein CLOSPO_00239 [Clostridium sporogenes ATCC 15579] gi|187775383|gb|EDU39185.1| hypothetical protein CLOSPO_00239 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ + + I L ++ F TD G + I L Y+ D IILDLGL D+ G EV Sbjct: 7 ILVVEDDRPIRNFITASLAAQGFKYIETDKGNEAIALSMSYKPDLIILDLGLPDMDGIEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 ++ +R + P+ I+S + KV L GADDY++KPF EL+AR+R +R + Sbjct: 67 VKKVREWS-NIPIIIVSARENERQKVEALDQGADDYLTKPFGIGELLARVRVALRHAITD 125 Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +G Q+ + +L V+ + + V + IHLT EY+++ LL LT ++ Sbjct: 126 KGGNQNRDIFKVKNLIVDFNKRRVVINNEEIHLTPIEYKIMALLCKYPGKVLTHNFIIHD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E + + VF+ LR+K+ YI T G GY L Sbjct: 186 IWGSAIGNETQSLRVFMASLRRKIEKNPAQPEYIYTEVGVGYRL 229 >gi|158318231|ref|YP_001510739.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113636|gb|ABW15833.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 231 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ L+ + + L+ E + V G + + + DA++LD+ L D+ G E Sbjct: 7 RILVVDDENTLSELLSMALRYEGWEVRTAQDGRGALRAARDFRPDAVVLDIMLPDMDGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR Sbjct: 67 VLRKLRADSPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLHR 126 Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++V GDL +N +++ V G I LT E++++ L+K L+ + Sbjct: 127 STIWDGAVLVVGDLIMNEESREVTRAGREIRLTATEFELLRYFMRNPRRVLSKAQILDRV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + ++++++ LRKK+ AG I T+ G GYVLR Sbjct: 187 WNYDFGGQANVVELYVSYLRKKID--AGRPAMIHTMRGAGYVLR 228 >gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 228 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 127/222 (57%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD+ + I++ L++ +NV V G+ E + + ++LD+ L I E Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDRME 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R + PV +L+ DKV L+ GADDY+ KPF +EL+AR++A++RR G Sbjct: 67 VLKWIR-KDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +V + +DA + +V G + KE++++ L+ KN T++ L ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 G D P + + +DV I +LR+KL+ GG+ + +ETVWG GY Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLN---GGEEWQLETVWGVGY 223 >gi|315290879|gb|EFU50248.1| response regulator receiver domain protein [Escherichia coli MS 153-1] Length = 239 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G L +DA+ILDL L ++ G E Sbjct: 6 KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S +V GL+ GADDY+ KPF+ EL+ARI+A+ RR Sbjct: 66 ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125 Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++++ G L +N ++ V + ++ LT +E+ + + ++ L Sbjct: 126 MGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLRLWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + E ++ I +LR K+ A I+TVWG+GY Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 229 >gi|307329139|ref|ZP_07608305.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885169|gb|EFN16189.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 221 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/219 (35%), Positives = 127/219 (57%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD+AL S+ LK+E + V +T G +G+ L + ++FD I+LD+ L + G+ Sbjct: 1 MRILVIEDDEALGASLTWGLKAEGYVVCLTADGAEGLWLAQEHDFDLIVLDVMLPGLDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR A TP+ +L+ M + D+ GL GADDY++KPF+ L+A +RA++RRS Sbjct: 61 QICARLREAGKWTPILMLTAMDAPLDQAEGLDLGADDYLTKPFSYPVLLAHLRALLRRST 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + +G+L+++ V G + LT E ++E L + T++K L H +D Sbjct: 121 RERPAQLRSGELTLDPATHAVHFAGRPLALTPGEASVLEYLLRAEGRTVSKAELLEHCWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++V I LR+K + IETV GRGY Sbjct: 181 MASRADPAVVEVRIHHLRRKTD-----ASVIETVRGRGY 214 >gi|228997560|ref|ZP_04157173.1| Sensor histidine kinase [Bacillus mycoides Rock3-17] gi|228762188|gb|EEM11121.1| Sensor histidine kinase [Bacillus mycoides Rock3-17] Length = 231 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E +++Y G++ + + ++ D +ILD+ + G EV Sbjct: 6 ILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLHQIDLMILDIMMPKRNGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + + P+ +LS + DK+ GL +GADDY+ KPFN EL+AR++A++RRS Sbjct: 66 CQQVR-EENTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSFQ 124 Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 125 QVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR+KL G+ I TVWG GY Sbjct: 185 RVWNEDGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGY 227 >gi|229076471|ref|ZP_04209433.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|229099686|ref|ZP_04230613.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228683756|gb|EEL37707.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228706657|gb|EEL58868.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 223 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V V G + +E K+ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALE--KWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G+L + + + V G I LT +E+ + +L ++ L Sbjct: 119 KKEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|77460156|ref|YP_349663.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384159|gb|ABA75672.1| two-component system response regulator [Pseudomonas fluorescens Pf0-1] Length = 226 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+ EDD+ +A I L ++ V + + K EFD ++LDLGL D G Sbjct: 1 MHVLVCEDDELIASGIVAGLTAQGLTVEHVNTASKARAILKVAEFDVMVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR + PV IL+ S+ D+V GLQSGADDY+ KPF+ EL AR++ ++RR Sbjct: 61 KLLQQLRQQGLEIPVLILTARDSVTDRVDGLQSGADDYLLKPFDLRELFARLQTLLRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +LI G L+ + ++ + G + L+ +E +++ L + L+ E + +Y Sbjct: 121 GRSVNLIEHGALTYDPSSRETTLAGRPVDLSRREQSLLQALLHNRGRVLSTEQLKDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR KL GK +ETV G GY L Sbjct: 181 FNDELESNALNVHIHHLRSKL-----GKGIVETVRGLGYRL 216 >gi|332365635|gb|EGJ43394.1| two component response regulator [Streptococcus sanguinis SK355] Length = 225 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 133/222 (59%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED+ L S+ +LK E+F+V GE+ +E + ++D IILD+ + + GF Sbjct: 1 MKLLLVEDEADLNRSLTKLLKKEHFSVDSAFDGEEALEFLEMLDYDLIILDIMMPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L +R A V +L+ S+EDK+RGL GADDY+ KPF EEL+AR+RA++RR + Sbjct: 61 AFLEKIRQAGKQVIVLVLTARDSLEDKIRGLDLGADDYLVKPFEFEELLARLRALLRRQQ 120 Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S I G++ ++L K V + LT KEY+++E L+ ++ L++E +H++ Sbjct: 121 RELVSQKIDLGEIVLDLTKKAVLKDDQVLELTAKEYEVLEYLARNQDHILSREQIRDHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E E IIDV I +R+K+ + ++ I T G GYV+ Sbjct: 181 DFDYEGESNIIDVLIKNIRRKI-DQDKKQSIIHTKRGVGYVI 221 >gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC 35185] gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC 35185] gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] Length = 254 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 9/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+++ED++ +A +++ L+ E F + G E ++D ++LD+ L D+ G EV Sbjct: 31 IMIVEDERRIARFLQMELEHEGFETESEENGRRAYERIVQEQYDLVLLDIMLPDMDGLEV 90 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R RV +IS P+ +L+ +EDKV GL GADDYI+KPF +EL+AR+RA +R + Sbjct: 91 CR--RVREISDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIRVHKA 148 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + ++ DL + V V+G + LT KEY ++E + K LT++ L Sbjct: 149 NEAGNRDERVLAVKDLVLYPGRYEVRVKGDLVELTKKEYSLLEYMLRNKPNVLTRDQILQ 208 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + ++DV+I LR K+ K YI TV G GY ++ Sbjct: 209 EVWGYDYVGDTNVVDVYIRYLRAKIDERFDDK-YIYTVRGVGYAIK 253 >gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 237 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 14/229 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57 +RIL+ +DDK + ++ L+ E +Y+ D +G E LC F + ++ +ILDL + + Sbjct: 4 IRILIADDDKEIRDLLKRYLERE---LYMVDTAINGEEALCLFNQNNYNLVILDLMMPKV 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++R Sbjct: 61 DGIEVCRKLR-DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMR 119 Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R + ++ + L+++ TV G I+LTGKE ++++ + T Sbjct: 120 RFLVLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFT 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +++D + + V I KLRKK+ + +I+TVWG GY Sbjct: 180 KTQLFRNVWDDNYTEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGY 228 >gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603] gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 224 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E + D +ILD+ L D G+ Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWN-EQPDVLILDVMLPDTDGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R + PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 61 ELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L I GDL + + + V G I LT +E+ + +L ++ L Sbjct: 121 KKEVPLNHEVIGAGDLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL A+G YI+T++G GY L Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLG-ASG--EYIKTIYGVGYKL 222 >gi|124267939|ref|YP_001021943.1| two-component system response regulator [Methylibium petroleiphilum PM1] gi|124260714|gb|ABM95708.1| two-component system response regulator [Methylibium petroleiphilum PM1] Length = 225 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 113/224 (50%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL++EDD+ L + L+S F V + TD G +DAI+LDLGL G Sbjct: 1 MRILIVEDDRLLGDGLAAGLRSLGFAVDWFTD-GAQADAALSHTPYDAIVLDLGLPGRDG 59 Query: 60 FEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 L R STPV +L+ I+ ++ GL +GADDY+ KP EL AR+RA++R Sbjct: 60 LAWLARWRGPGPLQSTPVLVLTARDGIDHRIAGLDTGADDYLIKPIETTELAARLRAVLR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G Q L G LS AK V +G + LT +E ++ELL L K + Sbjct: 120 RSQGRPQPLWQHGALSYQPAAKAVLWRGKPVVLTARECALLELLLANPQRVLPKSLITEK 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY E E ++V I LR+K+ + TV G GY L Sbjct: 180 LYSFEQEIESNALEVHIHHLRRKID-----PKLVRTVRGMGYAL 218 >gi|332976592|gb|EGK13433.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 235 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 3/226 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD L S+ +L+ E F V G++G+ L + +D I+LD+ L +I G Sbjct: 12 MKILLIEDDLPLLESLRRILEKE-FEVETAATGDNGLFLAEQNIYDLIVLDIMLPEINGL 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR +I PV +L+ S+EDKVRGL GADDY+ KPF +EL+ARIRA++RR Sbjct: 71 DILTTLRKKEIEVPVLLLTAKDSVEDKVRGLDRGADDYLVKPFEVQELLARIRALLRRRG 130 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ G + ++L + V G + LT KE+ ++E L LTKE + ++ Sbjct: 131 AFKPDGILRYGAIRLHLKKQEGYVNGFPLQLTEKEFLLLEFLVQNAKQILTKEQLYDRVW 190 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I++++I LRKKLS A G I T+ G GY+L + + Sbjct: 191 GFDSLTSLSIVELYIHYLRKKLS-AHGLSGVIHTIRGVGYMLEDRS 235 >gi|255320247|ref|ZP_05361432.1| protein PetR [Acinetobacter radioresistens SK82] gi|262380462|ref|ZP_06073616.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255302686|gb|EET81918.1| protein PetR [Acinetobacter radioresistens SK82] gi|262297908|gb|EEY85823.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 254 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 15/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 RIL+++DD L ++ L+ + F V D ++ + + F I+LD L Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGF---VVKTAHDATQMDRLLQRELFSLIVLDFMLPVED 78 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR + I P+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 79 GLSICRRLRQSNIDIPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + ++ G S++L +T+ +G + LT E+ +++ L LT+ Sbjct: 139 QVREVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTR 198 Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +N L GR+ + + IDV + +LR+ + YI+TVWG GYV Sbjct: 199 DKLMN-LARGREWGAMERSIDVQVSRLRRLIEENPARARYIQTVWGVGYVF 248 >gi|170720246|ref|YP_001747934.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169758249|gb|ACA71565.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 223 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G E+ +LD+GL + GF Sbjct: 1 MRVLLVEDHVQLAESVAQALKSHGLTVDVLHDGVAADLALASEEYAVAVLDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRGRGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGPLVYDLDTRRFALGEDNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+++I +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GQSVAIVTFRGLGYLL 218 >gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580] gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2] gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580] gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2] Length = 240 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 12/233 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE G+ + D I+LDL L + G E Sbjct: 4 KILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEKPDLIVLDLMLPKMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RR++ Sbjct: 64 VCKELRQKKLMYPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRTQT 123 Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 A LI+ G+L + + V Q R+ LT KE++++ L K LT Sbjct: 124 LSVQPEETEEPDAGELII-GELKILPEHYEVYFQNERLELTPKEFELLLYLGRHKGRVLT 182 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +++ LN +++ + +I+DV I LR K+ YI+T+ G GY + E Sbjct: 183 RDLLLNAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPEYIKTIRGLGYKMEE 235 >gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] Length = 232 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 129/224 (57%), Gaps = 10/224 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + + LK + G+ ++L D IILDL L + G+E Sbjct: 5 RILIVDDEKGIQDIVSQALKRRGYETICASDGDSALDLAFAAHPDLIILDLMLPRMDGWE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ K + P+ +L+ D V GL+ GADDY+ KPF+ ELVAR+ ++RR+ Sbjct: 65 VCRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRRT 124 Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN-- 176 R ++ +T GDL ++++ + V ++G+ + L+ E++++ELL+ R T++++ L Sbjct: 125 RMTEETRQITNGDLVMDIENQWVMLRGNSLDLSPTEFRLLELLAHRFGRTVSRDELLGRI 184 Query: 177 -HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +LY G + + +DV I +LRKKL + I+T+ GRGY Sbjct: 185 WNLYGG----DTRTVDVHISRLRKKLDDNKHPALLIQTLRGRGY 224 >gi|256823535|ref|YP_003147498.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256797074|gb|ACV27730.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 240 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E LK ++F V + E + + ++LDL L G Sbjct: 7 KILVVDDDVRLRSLLERYLKEQDFMVRTVENAEQMDRFLERENYHLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR P+ +L+ D++ GL+ GADDY++KPFN EL+ARIRA++RR Sbjct: 67 ICRRLRSQNNPIPIIMLTAKGDEVDRIVGLEVGADDYLAKPFNPRELLARIRAVLRRQAK 126 Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H +++++ G ++NL + + G+ I LT E+ +++ L L+++ Sbjct: 127 HIPGAPSNSETVVSFGRFTLNLATREMTDDGNPISLTSGEFAVLKSLVEHARQPLSRDKL 186 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +N L GRD + + IDV + +LR+ + YI+TVWG GYV Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEADPAHPRYIQTVWGVGYVF 233 >gi|260589879|ref|ZP_05855792.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|260539686|gb|EEX20255.1| regulatory protein VanR [Blautia hansenii DSM 20583] Length = 243 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ILL+EDDK + + +LK ++NV G + IE ++D ++LDL L D+PG Sbjct: 21 INILLVEDDKEICFILTELLKRNHYNVSAYHNGIEAIEALSSKKYDLMLLDLMLPDLPGE 80 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L L+ S PV ++S + E ++ L+SGADDYI+KPF EE++ARI +++RR Sbjct: 81 KILFHLKKHNNSIPVIVISAKNQPEIRINLLRSGADDYITKPFYHEEVLARIESVLRRCS 140 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+ D+ +N+D V V + LT EY +++LL T TKE L L Sbjct: 141 ESPQTEYSFKDIRINVDDHKVLVNNTELSLTTTEYNLLQLLIKHPKQTFTKES-LYQLIW 199 Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 G+D + ++V I KLRKKL + YI+TVWG GY L Sbjct: 200 GKDYISDDNTLNVHISKLRKKLEHIGNQAPYIDTVWGIGYKLH 242 >gi|188532256|ref|YP_001906053.1| DNA-binding transcriptional regulator CpxR [Erwinia tasmaniensis Et1/99] gi|188027298|emb|CAO95141.1| Two-component response regulator [Erwinia tasmaniensis Et1/99] Length = 233 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 11/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FNV V GE + L D ++LD+ + G + Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALALLD-NTVDLLLLDVMMPKKNGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQ--------SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q S + D L +N + G + LTG E+ ++ LL+ +++E Sbjct: 121 SEQQQHQHDNSSPTLEVDLLRLNPGRQEASFDGETLDLTGTEFTLLYLLAQHLGQVVSRE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL + +T+ GRGY++ Sbjct: 181 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDAHPWFKTLRGRGYLM 229 >gi|320529002|ref|ZP_08030094.1| response regulator receiver domain protein [Selenomonas artemidis F0399] gi|320138632|gb|EFW30522.1| response regulator receiver domain protein [Selenomonas artemidis F0399] Length = 231 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL EDD L I+ ML+ + V G+D E + E+D +ILD + G Sbjct: 7 MRVLLAEDDLRLGKLIQYMLEQNDITVEWVTNGDDIYEYATYTEYDILILDWMMPGENGV 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR + + +L+ S+ED+V GL +GADDY+ KPF EL+AR+RA+ RRS Sbjct: 67 DACARLRKSGYDRAILMLTARDSVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRST 126 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + G +N A +E G I L+ +E+Q+ +LL+ + +++ L+ ++ Sbjct: 127 QKIQHEVDEIGGFRLNRTANILEKNGKMIQLSPREFQLFDLLAQNIGIVVPRDIILDRIW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ID ++ LRKKL A+ G+ I+T+ G GY L Sbjct: 187 GLESDVSSNNIDSYMKMLRKKLDAASEGEA-IKTIRGVGYKL 227 >gi|229178308|ref|ZP_04305678.1| Two-component response regulator vanR [Bacillus cereus 172560W] gi|228605187|gb|EEK62638.1| Two-component response regulator vanR [Bacillus cereus 172560W] Length = 242 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPITFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDLSVNL-------DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G ++LT EY ++ L++ +N T E Sbjct: 135 NQNAVQVMEKKINIRGLEIDEASRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I +LR K+ +I+ VWG GY Sbjct: 195 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238 >gi|262202521|ref|YP_003273729.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262204066|ref|YP_003275274.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262085868|gb|ACY21836.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087413|gb|ACY23381.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 244 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 10/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + L+IED+ +A + L+ F V V G++G+ + +ILDLGL + G Sbjct: 10 LHALVIEDEPDIAEVVADYLQRSGFTVTVAPDGQEGVAAARTASPAVVILDLGLPSLDGV 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + V + + + D V GL GADDY++KPF EL+ARI A++RR R Sbjct: 70 EVCRQLRTFTNAYIVMVTARADEV-DTVVGLSVGADDYLTKPFRPRELMARIDAMLRRPR 128 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H +++ G+L+++ + V+V+ + LT E+ ++E L+ R ++E Sbjct: 129 PTPTGESHPRTI---GELTLDPQGREVQVESTPVELTRTEFDVLEALTRRPGVVFSREQL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ + +++V + LR+KL ++A +I TV G GY Sbjct: 186 LTEIWGPDWVGDAHVVEVHVASLRRKLGDSAVAGRFIRTVRGVGY 230 >gi|146284354|ref|YP_001174507.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri A1501] gi|145572559|gb|ABP81665.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri A1501] Length = 271 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYE-FDAIILDLGLTDI 57 MRILL+ED LA S+ L+ + V DL DGI +L E + ILD+GL + Sbjct: 49 MRILLVEDHPQLAESVAQALRGAGWTV---DLLHDGIAADLALASEDYALAILDVGLPRL 105 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF+VL LR + PV +L+ + D+V GL GADDY++KPF EL AR++A++R Sbjct: 106 DGFQVLARLRGRGKTLPVLMLTARGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLR 165 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS G + G L +LDA+ + + LT +E ++E L R ++K+ Sbjct: 166 RSVGGGERQQRCGVLVYDLDARRFSLADEPLTLTSREQSVLEALIARPGRVMSKDQLAAQ 225 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ I++++ +LRKKL G I T G GY+L Sbjct: 226 VFGLDEDASADAIEIYVYRLRKKLE---GQPVRIVTFRGLGYML 266 >gi|91785765|ref|YP_560971.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|187925893|ref|YP_001897535.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|296157565|ref|ZP_06840400.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|307731487|ref|YP_003908711.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|91689719|gb|ABE32919.1| Two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] gi|187717087|gb|ACD18311.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|295892337|gb|EFG72120.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|307586022|gb|ADN59420.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 228 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LLIEDD+ +A I+ L+ F V D+ DGI + + +ILDLGL I Sbjct: 1 MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L R + TPV IL+ + D+V+GL SGADDY+ KPF EL ARIRA++R Sbjct: 58 DGMTLLSRFRQSNRHTPVIILTARDELNDRVQGLNSGADDYMLKPFEPTELEARIRAVMR 117 Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RS H + + G + ++ + + + L+ +E+ ++E+L LR ++K Sbjct: 118 RSGPHGDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +HL + I+V++ ++RKKL + + I TV G GY+L+E Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLESC---RVEIVTVRGFGYLLQE 223 >gi|27378858|ref|NP_770387.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27352007|dbj|BAC49012.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 224 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L+ + L + + + + E + A+ILDLGL D G Sbjct: 1 MRLLIVEDNAELSRLVAAGLSAAGYESDIVSSAAEAREAVGSVSYAAMILDLGLPDGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR PV +L+ ++D+V GL+SGADDY++KPF EELVAR+ AI+RR Sbjct: 61 SVLRELRRQMEPLPVLVLTARGGLQDRVNGLRSGADDYLAKPFAMEELVARLEAILRRPG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +L + +++ + + ++ +E ++E+L R+ + K+ +H++ Sbjct: 121 QLLGRSLRLANLVYDTESRQIFIDDQPRIISAREASVLEILLRRQGRVVPKKNVEDHIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++V++ +LRK+L+ G K I T+ G GY++ E Sbjct: 181 LEGEVASNAVEVYVSRLRKQLTE-HGAKVVIHTIRGVGYLMAE 222 >gi|328946836|gb|EGG40973.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] Length = 234 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 120/204 (58%), Gaps = 5/204 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E ++V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMIHEGYHVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLRIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179 Query: 181 GRDEPE---VKIIDVFICKLRKKL 201 +DE E + ++I LR+KL Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203 >gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334] gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334] Length = 234 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSHP 121 Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 I GDL + +A + G + LT +E++++ L+ +T+E Sbjct: 122 IPVDEQEADSKPQPIQIGDLEIVPEAYVAKKYGEELDLTHREFELLYHLASHIGQVITRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233 >gi|319639384|ref|ZP_07994134.1| BasR protein [Neisseria mucosa C102] gi|317399279|gb|EFV79950.1| BasR protein [Neisseria mucosa C102] Length = 225 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A ++ LK + V G + +D ++LDLGL G Sbjct: 1 MRVLLVEDDAMIAQAVSANLKDAGYAVDWVSRGSEVAAAVAAQAYDLLLLDLGLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + PV I++ + ++ GL GADDYI KPF+ EL AR+RA++RR Sbjct: 61 DVLAQIRNGGCTVPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRRHG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G AQ+L+ G +++N EV G + L+ KE+ +++ L LR L++ + + Sbjct: 121 GQAQTLLTNGIITLNPSTHQAEVVGQEQAVMLSNKEFAVLQALLLRPGMILSRSDLEDKI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 Y +E E +D I LRKKL GK I+ V G G+++ +N Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKEAIQNVRGVGWLVAQN 221 >gi|170780901|ref|YP_001709233.1| putative turgor pressure regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155469|emb|CAQ00578.1| putative turgor pressure regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 234 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 126/224 (56%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ +DD+ + ++ + L S +++ + G + + D ++DLG+ + G Sbjct: 1 MKILIADDDQQILRALRITLTSLGYDIVTAEDGAAAVRAAVAEKPDLYMIDLGMPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV++ALR+ + P+ ++SG S DKV L +GADDY++KPF+ +EL+ARIRA+ RR+ Sbjct: 61 EVIQALRLWS-TAPILVVSGRSGAADKVEALDAGADDYVTKPFSIDELLARIRALGRRAA 119 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RG + S D++V+L A+ V R+ LT E+Q++ELL + ++++ L Sbjct: 120 ADEDRGASVSF---ADVTVDLAARVVTRGDQRVRLTPTEWQVLELLVRNPDRLVSRQALL 176 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + +++ +LRKKL ++ T G GY Sbjct: 177 TEIWGPTHVNDSGYLRLYVAQLRKKLEPDPAHPRHLLTDPGMGY 220 >gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family [Spirochaeta thermophila DSM 6578] Length = 226 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 128/228 (56%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ + + L+ E + V T G D +E + DAIILDL L + G Sbjct: 1 MTILVVDDEPDIVELVRFHLEREGYEVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGL 60 Query: 61 EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV R LR ++ P+ +L+ S D V GL+ GADDYI+KPF+ L+AR++A+++R Sbjct: 61 EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120 Query: 119 SR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G + IV G+L ++ +V V+G + L+ E+ ++ L+ +++ + Sbjct: 121 THPPEGRSDEPIVVGELVIDPHRYSVRVRGREVILSATEFAILSFLARNPGWVFSRQQII 180 Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + G D P + +DV I +RKKL +A ++YI+TV G GY L+ Sbjct: 181 DAV-KGEDYPVTERAVDVQILSIRKKLGDA---RDYIQTVRGVGYRLQ 224 >gi|313200176|ref|YP_004038834.1| two component heavy metal response transcriptional regulator, winged helix family [Methylovorus sp. MP688] gi|312439492|gb|ADQ83598.1| two component heavy metal response transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 268 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MRIL++ED+ + L F VTDL G DG + +D IILD+ L Sbjct: 43 MRILVVEDEHKTGEYLRKGLTEAGF---VTDLVHDGLDGQHMALAEHYDLIILDVMLPRA 99 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++++ ALR A TPV L+ +ED+V+GL+ GADDY+ KPF EL+ARIR ++R Sbjct: 100 SGWQIIAALREAGKHTPVLFLTARDLVEDRVKGLELGADDYLVKPFAFSELLARIRTLLR 159 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R R ++ +L +++ + V+ G +I LT KE+ ++ELL R+ L++ + + Sbjct: 160 RGRTREADVLQVANLEIDVLRRRVQRDGKKIELTAKEFGLLELLVRRRGEVLSRSLIASQ 219 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++D + + +I+V + +LR K+ + K I TV G GYVL Sbjct: 220 VWDMNFDSDTNVIEVAMRRLRAKIDDPFEPK-LIHTVRGMGYVL 262 >gi|330940506|gb|EGH43585.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 224 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +ST + +++ +E+KV+GL+ GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 EVLSRLR-KTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + S ++ GDL ++ RI LT KE+ ++ LL ++ ++ ++ Sbjct: 120 QTSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSPTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220 >gi|220911674|ref|YP_002486983.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219858552|gb|ACL38894.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 236 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G D + + D +LD+ L D+ GF Sbjct: 9 KLLVVDDEPNIRELLSTSLRFAGFEVVSAANGRDALAAADAHAPDLAVLDVMLPDMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV L+ EDKV GL G DDY++KPF+ +E+VARIRA++RR++ Sbjct: 69 VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 128 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++I GDL ++ DA V G I L+ E++++ L L N L+K L+H++ Sbjct: 129 LLDDDAVIRVGDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I++ +I LR+K+ I+T G GYVLR K Sbjct: 189 EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVLRTAEK 235 >gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597] gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564] gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564] gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597] Length = 235 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 Q L + GDL + DA + G + LT +E++++ L+ +T Sbjct: 122 ASVDNQESDENKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|288918083|ref|ZP_06412440.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288350465|gb|EFC84685.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 267 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 5/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ L+ + + L+ E + V G +++ + + DA++LD+ L D+ G E Sbjct: 43 RILVVDDESTLSELLSMALRYEGWEVQTAPDGRGALKVARDFRPDAVVLDIMLPDMDGLE 102 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR PV L+ ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR Sbjct: 103 VLRKLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLHR 162 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S +V GDL +N +++ V G + LT E++++ L+K L+ + Sbjct: 163 STLSDGATLVVGDLIMNEESREVSRAGQEVRLTATEFELLRFFMRNPRRVLSKAQILDRV 222 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + ++++++ LR+K+ G + I T+ G GYVLR Sbjct: 223 WNYDFGGQANVVELYVSYLRRKID--VGRQPMIHTMRGAGYVLR 264 >gi|282857214|ref|ZP_06266458.1| two component transcriptional regulator, winged helix family [Pyramidobacter piscolens W5455] gi|282585000|gb|EFB90324.1| two component transcriptional regulator, winged helix family [Pyramidobacter piscolens W5455] Length = 231 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ +A L++ F V + G +G+ L + E+ ++LD+ L I GFE Sbjct: 3 KILIVEDDRPIAELERDYLEANGFAVEIAFDGREGLRLARTEEYALLLLDVMLPGISGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 + R +R +K + PV +++ DK+RGL GADDY+ KPF+ ELVAR RA ++ Sbjct: 63 ICREVRKSK-NVPVVMVTARKDDVDKIRGLGLGADDYVVKPFSPSELVARCRAHIQIHER 121 Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S G + + V G L + ++ V V G + L +EY+++ L+ + ++E Sbjct: 122 LSSGASSGAERPIEVKG-LKILPLSRRVFVGGREVALARREYELLLFLAANPDIVFSRET 180 Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ G D P + + V + ++R K+ YIETVWG GY Sbjct: 181 LFERIW-GEDHPGDAATVTVHVNRIRDKIEKDPSRPEYIETVWGAGY 226 >gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1] gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 223 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E K D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWKEGP-DVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I G++++ + V V G + LT +E+ + +L ++ L Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGKSG---EYIKTIYGVGYKL 221 >gi|210609626|ref|ZP_03288077.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787] gi|210152816|gb|EEA83822.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787] Length = 233 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD A+ + I L+++++ + G + + D ++LDLGL D+ G E+ Sbjct: 6 ILVVEDDTAIRNLITTTLETQDYRFHTAPNGVQALLESVSQKPDIMLLDLGLPDMDGIEI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ +R + + P+ ++S S DK+ L +GADDY++KPF+ +EL+AR+R +RR Sbjct: 66 IKKVR-SWSNLPIIVISARSEDRDKIDALDAGADDYLTKPFSVDELLARLRVTLRRLQYM 124 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S Q+ V GDL ++ + V ++ +HLT EY+++ LL+ LT + Sbjct: 125 SVSQEQTEFVNGDLRIDYVSGCVYLKEKELHLTSTEYKLLSLLAKNVGKVLTHTYITREI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +V + VF+ LRKK+ YI+T G GY Sbjct: 185 WGSAWDNDVASLRVFMATLRKKIEENPSQPQYIQTHIGIGY 225 >gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 232 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + + L L+ E V GE + L + D ++LDL L + G EV Sbjct: 4 ILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQPPDLVVLDLMLPKVTGLEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R L+ + TPV +L+ S D++ GL GADDY+ KPF+ ELVAR+ A++RR Sbjct: 64 CRRLQSDR-RTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLRRVQPQ 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + I G L V+ + V+V G I LT +E+ ++ L+ + T++ + Sbjct: 123 PDAPPPDERPIELGALRVDPRTRDVQVAGKSISLTAREFDLLYFLARHRERVFTRDQLME 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I +LR+K+ + Y++TVWG GY L Sbjct: 183 LVWGYTFSADTSTVTVHIRRLREKIEDDPTAPRYLQTVWGVGYKL 227 >gi|77457581|ref|YP_347086.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77381584|gb|ABA73097.1| two component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 223 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS V V G E+ ILD+GL + GF Sbjct: 1 MRVLLVEDHLPLAESVAQALKSTGLTVDVLHDGVAADLALGSEEYAVAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L+ +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGVLAYDLDTRRFTLGDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I++++ +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVAIVTFRGLGYLL 218 >gi|15894830|ref|NP_348179.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15024503|gb|AAK79519.1|AE007665_6 Response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325508968|gb|ADZ20604.1| Response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 227 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 12/223 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ + + L+ E +NVY T G DGIEL K +F +ILDL L DI G EV Sbjct: 4 ILVVEDEENVLEIVRAYLEKEGYNVYCTTQGLDGIELFKKVKFQLVILDLMLPDIDGEEV 63 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 R LR +IS + IL+ +++D++ GL GAD+Y+ KP + EL AR+ A+ RR + Sbjct: 64 CRILR--RISDVYIFILTAKVALKDRIEGLNMGADEYLLKPCSPRELTARVNALFRRVFK 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178 + G+L + D + V ++ +I LT E+ ++ L L K L++E + + Sbjct: 122 DENNTDFDDGNLQICSDKRIVRIKDQQISLTPNEFDILYALVLNKGRVLSREQLIERVFG 181 Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +DG D + IDV I +RKK+ YI TV GY Sbjct: 182 LDFDGFD----RTIDVHIKNIRKKIEEDTKKPKYIITVTKLGY 220 >gi|33864662|ref|NP_896221.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33632185|emb|CAE06641.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 253 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE +EL D ++LD+ L + GF V Sbjct: 13 VLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLVVLDVMLPKLDGFAV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I +KV GL GADDY+ KPF+ +EL ARI I+RR RG Sbjct: 73 CRRLR-AESCVPIIFLSAVDAISEKVAGLDLGADDYLPKPFSPKELEARISTILRRVGRG 131 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A Q ++ G+L V+ + + V RI+LT E+ ++ELL + + Sbjct: 132 AAEIESRELPTGQGVMCIGELVVDTNRRQVTRGAERINLTYTEFSLLELLFREPGEVVPR 191 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241 >gi|294638191|ref|ZP_06716446.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685] gi|291088686|gb|EFE21247.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685] Length = 237 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L ++V G+ G+ L + +DA+ILDL L + G + Sbjct: 5 RILVVEDDTLIAELLTLHLSDAGYHVTHAAEGDRGMALIEQGGWDALILDLMLPGVDGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R TP+ I+S SS +V GL+ GADDY++KPF+ ELVAR++A+ RR Sbjct: 65 ICRRVRAMTRYTPIIIISARSSEPHRVLGLELGADDYLAKPFSMVELVARVKALFRRQEA 124 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++L++ G L+++ A+ V I LT +E+ ++ + ++ L Sbjct: 125 MGRNLMLEAGRLTHGALTLDPIARQAWVAERAIELTPREFDLLYFFARHPGQVFSRLQLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + + ++ I +LR K+ + +I TVWG GY Sbjct: 185 DKVWGYQHDGYEHTVNTHINRLRTKIEDDPAEPVWILTVWGAGY 228 >gi|29375010|ref|NP_814163.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|227519052|ref|ZP_03949101.1| response regulator [Enterococcus faecalis TX0104] gi|227553742|ref|ZP_03983791.1| response regulator [Enterococcus faecalis HH22] gi|229547739|ref|ZP_04436464.1| response regulator [Enterococcus faecalis TX1322] gi|229548299|ref|ZP_04437024.1| response regulator [Enterococcus faecalis ATCC 29200] gi|255970931|ref|ZP_05421517.1| two-component response regulator [Enterococcus faecalis T1] gi|256617297|ref|ZP_05474143.1| two-component response regulator [Enterococcus faecalis ATCC 4200] gi|256761300|ref|ZP_05501880.1| two-component response regulator [Enterococcus faecalis T3] gi|256852353|ref|ZP_05557729.1| response regulator [Enterococcus faecalis T8] gi|256959583|ref|ZP_05563754.1| two-component system response regulator [Enterococcus faecalis Merz96] gi|257080788|ref|ZP_05575149.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083459|ref|ZP_05577820.1| two-component system response regulator [Enterococcus faecalis Fly1] gi|257088874|ref|ZP_05583235.1| two component system response regulator [Enterococcus faecalis CH188] gi|257415107|ref|ZP_05592101.1| two-component response regulator [Enterococcus faecalis AR01/DG] gi|257418153|ref|ZP_05595147.1| two component system response regulator [Enterococcus faecalis T11] gi|293384250|ref|ZP_06630138.1| DNA-binding response regulator SrrA [Enterococcus faecalis R712] gi|293387019|ref|ZP_06631587.1| DNA-binding response regulator SrrA [Enterococcus faecalis S613] gi|300861877|ref|ZP_07107957.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|307275240|ref|ZP_07556386.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307288746|ref|ZP_07568724.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307292514|ref|ZP_07572363.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312900547|ref|ZP_07759847.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312904930|ref|ZP_07764069.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312906317|ref|ZP_07765328.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909663|ref|ZP_07768517.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312952008|ref|ZP_07770892.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29342469|gb|AAO80234.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|44933142|gb|AAS49388.1| response regulator [Enterococcus faecalis] gi|227073499|gb|EEI11462.1| response regulator [Enterococcus faecalis TX0104] gi|227177124|gb|EEI58096.1| response regulator [Enterococcus faecalis HH22] gi|229306515|gb|EEN72511.1| response regulator [Enterococcus faecalis ATCC 29200] gi|229307231|gb|EEN73218.1| response regulator [Enterococcus faecalis TX1322] gi|255961949|gb|EET94425.1| two-component response regulator [Enterococcus faecalis T1] gi|256596824|gb|EEU16000.1| two-component response regulator [Enterococcus faecalis ATCC 4200] gi|256682551|gb|EEU22246.1| two-component response regulator [Enterococcus faecalis T3] gi|256712207|gb|EEU27239.1| response regulator [Enterococcus faecalis T8] gi|256950079|gb|EEU66711.1| two-component system response regulator [Enterococcus faecalis Merz96] gi|256988818|gb|EEU76120.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991489|gb|EEU78791.1| two-component system response regulator [Enterococcus faecalis Fly1] gi|256997686|gb|EEU84206.1| two component system response regulator [Enterococcus faecalis CH188] gi|257156935|gb|EEU86895.1| two-component response regulator [Enterococcus faecalis ARO1/DG] gi|257159981|gb|EEU89941.1| two component system response regulator [Enterococcus faecalis T11] gi|291078398|gb|EFE15762.1| DNA-binding response regulator SrrA [Enterococcus faecalis R712] gi|291083561|gb|EFE20524.1| DNA-binding response regulator SrrA [Enterococcus faecalis S613] gi|295114236|emb|CBL32873.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] gi|300848402|gb|EFK76159.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|306496436|gb|EFM66004.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306500215|gb|EFM69554.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306508108|gb|EFM77232.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|310627692|gb|EFQ10975.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310630008|gb|EFQ13291.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310631814|gb|EFQ15097.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311290065|gb|EFQ68621.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311292372|gb|EFQ70928.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315028498|gb|EFT40430.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315144040|gb|EFT88056.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315146803|gb|EFT90819.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315153816|gb|EFT97832.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315167757|gb|EFU11774.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315172811|gb|EFU16828.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315574822|gb|EFU87013.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315576415|gb|EFU88606.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315582269|gb|EFU94460.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323479529|gb|ADX78968.1| response regulator [Enterococcus faecalis 62] gi|327534112|gb|AEA92946.1| response regulator [Enterococcus faecalis OG1RF] Length = 230 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD ++A + L+ + V + G+ G+E FD IILD+ L + GFE+ Sbjct: 5 VLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMDGFEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 RA+R K TP+ I+S DK+RGL GADDYI KPF+ ELVAR +A + R + Sbjct: 65 CRAIRKKK-QTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 L+ +++V+ A V V + + T KEY+++ L N KE Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183 Query: 178 LY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ D D EV + V I ++R+KL A + IET+WG GY Sbjct: 184 VWGFDALDT-EVSTVVVHIKRIREKLKKANLSDSPIETLWGSGY 226 >gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1] gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1] gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1] gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1] gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 229 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK +A +E+ +K+E + G + + +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTNPDIALMILDIMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS + DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 IEVIKEVR-KDSQLPILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLLRRS 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L++N D+ V+ + G I LT E+ ++ LL+ N + + Sbjct: 120 ENNVTTTEPDILDIGPLTINKDSHEVKTLTGKDIQLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGY 224 >gi|330990821|ref|ZP_08314777.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp. SXCC-1] gi|329762261|gb|EGG78749.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp. SXCC-1] Length = 223 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 14/231 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL++ED+ L +++ + + V + T L ED ++D ++LDLGL D G Sbjct: 1 MRILIVEDEYDLGVAVQERVGLDGHAVDWFTTL-EDARAAMATVDYDFMLLDLGLPDGSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 ++LR +R + I + I D++ GL GADDYI KP++ ELVARI A+ RR Sbjct: 60 RDLLREVRRTSSDIAILITTAEDQISDRIAGLSEGADDYIVKPYDLNELVARIAAVARRY 119 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R HA + G+++++ + ++V G R+ LT +E+ ++ELLS +++ Sbjct: 120 ASPRRHAHCRV--GEITIDRENRSVSRDGERLDLTAREWSIMELLSRSPGRIYSRQQIDT 177 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 LY + + ++VFI +LR+K+ N I T+ GRGY L +A+D Sbjct: 178 ALYALDRDVDSNTVEVFISRLRRKVGNTV-----IRTIRGRGYCL--DARD 221 >gi|302538254|ref|ZP_07290596.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302447149|gb|EFL18965.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 222 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 123/218 (56%), Gaps = 1/218 (0%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +++ED++ LA +++ L+SE F+V V G G+ + +++D I+LD+ L + G+ V Sbjct: 1 MVVEDERRLALALQRGLRSEGFSVDVAHDGPQGLWMACEHDYDLIVLDIMLPGLNGYRVC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 LR A + + +L+ D+ L +GADD++SKPF+ LVAR+RA+ RR+ A Sbjct: 61 ARLRAAGNESGILMLTAKDGEYDEAEALDTGADDFLSKPFSYLVLVARLRALGRRTGRRA 120 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 + GDL V+ G I LT +E+ ++E L+ R + K L ++D Sbjct: 121 PRTMQFGDLLVDPARHLCSRGGTEIRLTAREFAVLECLARRAGEVVPKREILEQVWDSAF 180 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V + +R+K+ +A G++ +ETV G GY L Sbjct: 181 DGDPNVVEVHVSAVRRKI-DAPFGRSALETVRGAGYRL 217 >gi|260772017|ref|ZP_05880934.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14] gi|260612884|gb|EEX38086.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14] Length = 228 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD L + ++ +L E F+V + G+ G+ E D I+LD+ + + G E Sbjct: 4 ILLIDDDTELTNLLKEVLSYEGFDVSEANDGQSGLAALN-DEIDLILLDVMMPKLNGMET 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR +TPV +L+ D+V GL+ GADDY+ KPF+ EL+ARIRAI+RR++ Sbjct: 63 LKRLR-ENWTTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQHQ 121 Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +I D+ V + QG + LT E+ ++ + TLTKEM + Sbjct: 122 SVHKPSDVIECQDIQVYPGKQEAYCQGQLLDLTTTEFALLGHFAQNPGETLTKEMLSLDV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R + ID+ + LRKKL GK I+T+ GRGY++ Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERVDGKPRIKTLRGRGYLM 224 >gi|324324273|gb|ADY19533.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 233 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + I + LK+E + V GE+G+ L + E ++LD+ + + G + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R K P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + G++ +N+ V V+G + LT +E+ ++ELL+ + E Sbjct: 125 NGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K+ YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGY 227 >gi|300173928|ref|YP_003773094.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888307|emb|CBL92275.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 126/230 (54%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ LK+E + + G++ I +L + ++LD+ + ++ G Sbjct: 1 MKILVVDDDIEIAELLEIYLKNEGYEPVMASDGKEAISKLNTNPDIALMVLDVMMPNMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+R+++RR+ Sbjct: 61 LEVVKIVR-KDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q ++ G L +N D+ V+ G ++LT E+ + LL+ N + + Sbjct: 120 ENSVQDQTPDVLDIGSLVINKDSHEVKTADGDLVNLTALEFGIFYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G I+TVWG GY + N Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGNQVIQTVWGVGYKIEVN 229 >gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 227 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 120/221 (54%), Gaps = 7/221 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + IE+ML + + + G + ++ D ++LD+ + GF V Sbjct: 4 VLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDVIVRENIDLVLLDVMMPHEDGFVV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R A + P+ L+ + EDKV+GL G DDYI KPF +ELVARI A++RRS + Sbjct: 64 CQSIR-AMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122 Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q ++ G + ++ A+ V V G I LT KE++++ L ++E L + Sbjct: 123 ITELQQKYVIFGSIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYSREQLLERI 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +D + +D I LR KL A ++I+TVWG GY Sbjct: 183 WDIDYVGGTRTVDTHIKTLRIKLGKDAA--SHIQTVWGVGY 221 >gi|284039402|ref|YP_003389332.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283818695|gb|ADB40533.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 227 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 131/223 (58%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED+ AL +++ L+SE + V + E Y++D +++DL L D G Sbjct: 1 MKILLIEDEPALQTAVQHYLESEGYAVTTATTFAEAAEKINDYDYDCVVVDLMLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++RAL+ + + + +++ ++ DK+ GL +GADDY++KPF+ EL AR+R+++RR Sbjct: 61 DLVRALKQRQSTAGIIVVTAKDALADKLTGLDAGADDYLTKPFHLPELNARLRSVLRRRL 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 + Q+ + G L++ D + V + G I LTGKEY+++ L N L+K H++ Sbjct: 121 FNGQAQLTAGSLTLWPDQQRVTIDGSDIKLTGKEYELLLFLVTNANRLLSKSAIAEHVWG 180 Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D D + + + + LR+KL AG +YI+T +G GY+ Sbjct: 181 DAMDAADSHEFLYTHVKNLRRKLIT-AGCPDYIQTRYGAGYIF 222 >gi|225407891|ref|ZP_03761080.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme DSM 15981] gi|225042570|gb|EEG52816.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme DSM 15981] Length = 260 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ++ I +L SE + D G D + + + IILDL + D+ GF+ Sbjct: 27 RILVVDDDPSVRRIICRVLGSEGISTEEADGGVDAVRMAVSNPYSLIILDLMMDDMDGFQ 86 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V+ LR I TP+ +LSG + DKV L GADDYI+KPF+ L A+++A +RRS Sbjct: 87 VIHHLRTNGILTPLFVLSGRQAEVDKVLALGIGADDYITKPFSTMVLCAKVKACLRRSSL 146 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 GHA LI G D + QG I L+GKE +++ +N LTK+ ++ Sbjct: 147 LSGHANELI-AGPFRYICDEMRLFKQGEEIFLSGKECLLMKYFLSNQNKILTKDQIYRYV 205 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ D + I V I +LR K+ ++ G Y++ + G GY Sbjct: 206 WND-DFVDDNTIMVHIRRLRMKIEDSPGHPVYLKNIRGMGY 245 >gi|116333923|ref|YP_795450.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116099270|gb|ABJ64419.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 262 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/245 (28%), Positives = 128/245 (52%), Gaps = 19/245 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M++L+IED+ +++ + + K E ++ G + +E+ +D + LDL L + Sbjct: 19 MKLLMIEDNHSVSQMMSMFFKKEQWDAEFAYDGNEAVEMFSANPNIWDMVTLDLNLPGMD 78 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +V +R + P+ +L+ S D+V GL+ GADDY++KPF+ L+ARI+A+ RR Sbjct: 79 GMQVSAEIRKLSPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRR 138 Query: 119 SR-------GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSL 163 + A+ L +VT + +N + + GH+I LT KE+ +++ L+ Sbjct: 139 AELGPTAKPTEAEPLNETEAFDVVTENFKLNTKTREAYLNGHQIQDLTPKEFDLLKTLAQ 198 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++E L ++D + + +D I KLR+K+ G I+TVWG GY + Sbjct: 199 KPRQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDD 256 Query: 224 NAKDE 228 + D+ Sbjct: 257 SGADQ 261 >gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 268 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + + + L+ + V + GE + L + D ++LD+ L + GF V Sbjct: 26 VLVVDDEATVRRVLVMRLQLAGYRVVCAEDGEQALSLFHDEQPDLVVLDVMLPKLDGFAV 85 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR RG Sbjct: 86 CRRLR-AESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A Q ++ GDL V+ + + V +G RI LT E+ ++ELL + + Sbjct: 145 SAAAESRDVPAGQGVLRVGDLVVDTNRRQVTREGERIGLTYTEFSLLELLFRDPGRVVPR 204 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254 >gi|302866216|ref|YP_003834853.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315502774|ref|YP_004081661.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302569075|gb|ADL45277.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315409393|gb|ADU07510.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 218 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ LA ++ L +E F V V G DG++ + E+DA+ILD+ L + G+ Sbjct: 1 MRLLVVEDETRLAAALRRGLSAEGFVVDVAATGPDGLDAARHGEYDAMILDVMLPGLSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+R LR + PV +LS D+ GL GADDY++KPF+ L+AR+RA++RR Sbjct: 61 EVVRRLRAEQRWLPVLMLSAKDGEYDQADGLDCGADDYLTKPFSYVVLLARLRALLRRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +++ GDL ++ + V + LT +EY +++ L R ++K L+H++D Sbjct: 121 PRRPTVLTVGDLRLDPARRRVTRADTEVVLTSREYALLDYLMRRPGEVVSKTELLDHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++V++ LR+K+ G+ +ETV G GY L Sbjct: 181 ASVDTAPNAVEVYVGYLRRKI-----GRERLETVRGAGYRL 216 >gi|258516208|ref|YP_003192430.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779913|gb|ACV63807.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 227 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ ++ I+L L+ E + V G G+E D IILD+ L + G E Sbjct: 5 KILIIEDEVKISRFIQLELEHEGYIVEKEKDGRAGLEKALHGNHDLIILDVMLPSLNGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +LR LR PV +L+ + DKV GL GADDY++KPF EEL+ARIR + R Sbjct: 65 ILRRLRQVS-EIPVIMLTAKDDVMDKVMGLDFGADDYLTKPFAIEELLARIRVAFKHKRV 123 Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H +S +I G+L ++L TV I LT KE+ +++LL + LT++ L ++ Sbjct: 124 QHEKSDVIQIGNLKLDLYKYTVSFNNEPIDLTKKEFDLLKLLMVNNEIVLTRDTILEKVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I+DV++ LR K+ + K +I TV G GY L+ Sbjct: 184 GYNYAGDTNIVDVYVRYLRIKIDDRYHQK-FIHTVRGVGYQLK 225 >gi|240145280|ref|ZP_04743881.1| DNA-binding response regulator RegX3 [Roseburia intestinalis L1-82] gi|253578070|ref|ZP_04855342.1| DNA-binding response regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251850388|gb|EES78346.1| DNA-binding response regulator [Ruminococcus sp. 5_1_39BFAA] gi|257202635|gb|EEV00920.1| DNA-binding response regulator RegX3 [Roseburia intestinalis L1-82] Length = 233 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RILL+EDD +L ++ LK F+V +V + E L + ++D +ILD+ L D GF Sbjct: 4 RILLLEDDVSLIDGLQYSLKKNGFDVDFVRSVQETLTYLSEIEKYDMLILDVTLPDGTGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ +R P+ L+ +RGL G DDYI+KPF EL +RIRA++RR+ Sbjct: 64 EICEKVRKNGSQIPIIFLTASDEEVSIIRGLDCGGDDYITKPFKLGELCSRIRALLRRAG 123 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q +++ GD+ ++L V ++G + LT EY++I LL N +T+++ L+ Sbjct: 124 LSTQGTGAVMECGDIKIDLLGSRVLLKGKILELTAAEYRLICLLVKNANRIITRDIILDE 183 Query: 178 LYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+D D + + V++ +LR+K+ ++ TV G GY +E Sbjct: 184 LWDSTGDYVDNNTLSVYVRRLREKIETDPSHPEHLLTVRGFGYQWKE 230 >gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC 15579] gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC 15579] Length = 239 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D++ + ++ L+ E + V GE+ I+L K F +ILDL L + G Sbjct: 11 FKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKLSGE 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV +R + + P+ +L+ EDK+ GL GADDY++KPF+ ELVAR++A++RR+ Sbjct: 71 EVCSKIRESS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAY 129 Query: 120 RGH---AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RG A+ LI+ GDL V++ V +G+ + LT E++++ L T+E + Sbjct: 130 RGKYPLAEHLILNDGDLEVDIRKMKVLKKGNVVTLTPYEFKVLVSLLTNPGQVFTREQLV 189 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 190 EQAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 233 >gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W] gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W] Length = 223 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G I LT +E+ + +L ++ L Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|313837585|gb|EFS75299.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314927535|gb|EFS91366.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314972523|gb|EFT16620.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328907809|gb|EGG27572.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 237 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 3/219 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD ALA ++L+L E F+ G D +++ + ++LDL L G ++ Sbjct: 11 ILVVDDDAALAEMLQLVLVKEGFSTVWVGHGRDVMDVFRERRPALVLLDLMLPGRDGIQI 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +L+ S D VRGL +GADDY+ KPF ELVAR+RA +R Sbjct: 71 CQDIR-RESGVPIIMLTARSDTPDVVRGLGAGADDYVCKPFRSAELVARLRARLRTPAAQ 129 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +I GDL+++ A V++ G I LT EY ++ L+ N ++E L ++ Sbjct: 130 REEAGVITVGDLTIDPAAHVVQLGGEEISLTPLEYSLLLTLAQHPNQVFSRETLLREVWG 189 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++++V + +LR K+ A I TV G GY Sbjct: 190 YTNSADTRLVNVHVQRLRSKVERNADHPQMIITVRGIGY 228 >gi|310778072|ref|YP_003966405.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747395|gb|ADO82057.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 230 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 16/228 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++DD + I+ L EN G + + FD IILD+ L D GF+ Sbjct: 5 KVLLVDDDIEICQMIKKALDPENIETLTISTGREARNVINSQAFDLIILDIMLDDTDGFQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 +L+ ++ I PV LSG DK+ L GADDYI+KPF+ L+A+I+A +RRS Sbjct: 65 LLKKIQAEDIEIPVIFLSGKQQDYDKILALGMGADDYITKPFSMSVLIAKIKAHLRRSDK 124 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I +N+D + G I L+ KE +++ N TKE Sbjct: 125 IKELQTSSRKITKAPFVLNIDTYQLFKDGEEIFLSSKEIMLMKFFMENPNRVFTKEQLYE 184 Query: 177 HLYDGRDEPEVKIID-----VFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ IID V+I LRKK+ + + YI+TVWG GY Sbjct: 185 KVWNNT------IIDNNSIMVYIRHLRKKIEDDSKNPEYIQTVWGIGY 226 >gi|300855471|ref|YP_003780455.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435586|gb|ADK15353.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 220 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL ++DDK + I+ L+ + V +T + I + +F +D I+LD+ + +I GFE Sbjct: 3 KILAVDDDKRILKLIKNALELNHHEV-ITLQDPENIPIEEFCGYDLILLDVMMPEIDGFE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 + + +R + + +P+ L+ + V+GL G DDYISKPF EL AR+ A +RR +R Sbjct: 62 LCQKIR-STVDSPIIFLTAKTDESSIVKGLAFGGDDYISKPFGVMELNARVEAYLRRENR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +V GD++++ D K + V + I T EY + E L+L + TK+ +YD Sbjct: 121 GKSTKKLVYGDITIDFDKKEILVNNNVIAFTKNEYNICEFLALNRGKVFTKQAIFEAIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I +I +R K IETVWG GY+ + Sbjct: 181 LDSDTQFSVITEYIRLIRNKFKEYNCFP--IETVWGVGYMWK 220 >gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM 13280] gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM 13280] Length = 278 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 122/236 (51%), Gaps = 21/236 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+K + + + L++E F+V + G D L EFD +LD+ L D+ GFE Sbjct: 46 RILVVDDEKTITDLVGIYLRNEGFDVTLAYNGADAARLILEREFDLAVLDIMLPDVDGFE 105 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 +LR +R + + PV +L+ S DK+ GL GADDY+ KPF ELVAR +A +RR Sbjct: 106 LLRTIRTER-TYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRRYTR 164 Query: 119 --SRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 SR A +I L +N DA+TV V + T EY ++ L+ + + Sbjct: 165 YGSREQAAPVEDAGPIISFNGLEINRDARTVTVDEKSVRCTPLEYSILLYLAEHRGHVVP 224 Query: 171 KEMFLNHLYD-----GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++D G + + V I LR+KL + A +I+ +WG GY + Sbjct: 225 VEELFRAVWDEEFMAGSN----NTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTI 276 >gi|148654779|ref|YP_001274984.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566889|gb|ABQ89034.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 227 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 129/223 (57%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LLIEDD+ LA I +L+ E++ V + G+ G+E + I+D L + G Sbjct: 1 MKVLLIEDDQRLARLIARVLRDEHYQVDMVHDGDTGLEYALRGVYQVAIIDWMLPERDGP 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 + RA+R A++ T + +L+ +EDK+ G SGADDY+ KPF EEL+AR+RA+ RR Sbjct: 61 SICRAVRAARLPTALLLLTARGQVEDKIVGFDSGADDYLVKPFAFEELLARVRALGRRFS 120 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + GDL ++L T + LT E+ ++E L L+++ L+H+ Sbjct: 121 LQPDDSNELRVGDLVLDLRHHTARRGTRPLDLTPTEWNLLEYLMRNAGQALSRQQILDHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + +++DV+I LR+KL NA+G ++ I TV G GY L Sbjct: 181 WSYDHDVQPQMVDVYIAYLRRKL-NASGERDPIVTVRGVGYRL 222 >gi|255973443|ref|ZP_05424029.1| two-component response regulator [Enterococcus faecalis T2] gi|256957737|ref|ZP_05561908.1| two-component response regulator [Enterococcus faecalis DS5] gi|256963145|ref|ZP_05567316.1| two-component system response regulator [Enterococcus faecalis HIP11704] gi|257080045|ref|ZP_05574406.1| two-component system response regulator [Enterococcus faecalis JH1] gi|257085734|ref|ZP_05580095.1| two-component system response regulator [Enterococcus faecalis D6] gi|294780611|ref|ZP_06745972.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|307270032|ref|ZP_07551354.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307272184|ref|ZP_07553444.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307282378|ref|ZP_07562585.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|255966315|gb|EET96937.1| two-component response regulator [Enterococcus faecalis T2] gi|256948233|gb|EEU64865.1| two-component response regulator [Enterococcus faecalis DS5] gi|256953641|gb|EEU70273.1| two-component system response regulator [Enterococcus faecalis HIP11704] gi|256988075|gb|EEU75377.1| two-component system response regulator [Enterococcus faecalis JH1] gi|256993764|gb|EEU81066.1| two-component system response regulator [Enterococcus faecalis D6] gi|294452221|gb|EFG20662.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|306503741|gb|EFM72968.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306511073|gb|EFM80083.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306513608|gb|EFM82218.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|315026240|gb|EFT38172.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315032211|gb|EFT44143.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315035425|gb|EFT47357.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|329574672|gb|EGG56234.1| putative transcriptional regulatory protein ResD [Enterococcus faecalis TX1467] Length = 230 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD ++A + L+ + V + G+ G+E FD IILD+ L + GFE+ Sbjct: 5 VLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMDGFEI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 RA+R K TP+ I+S DK+RGL GADDYI KPF+ ELVAR +A + R + Sbjct: 65 CRAIRKKK-QTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 L+ +++V+ A V V + + T KEY+++ L N KE Sbjct: 124 SNAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183 Query: 178 LY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ D D EV + V I ++R+KL A + IET+WG GY Sbjct: 184 VWGFDALDT-EVSTVVVHIKRIREKLKKANLSDSPIETLWGSGY 226 >gi|171316609|ref|ZP_02905824.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171098247|gb|EDT43055.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 241 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 134/238 (56%), Gaps = 16/238 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD LA + L + F V V G+ + + ++ +ILDL L ++ G E Sbjct: 9 RVLLIEDDDRLAQLVREYLDNYEFTVTVVRRGDLAVAAVREHQPALVILDLMLPNLDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 V R +R A + PV IL+ + + D+V GL++GADDY++KP LVAR RA++R Sbjct: 69 VCRRIR-AFTNVPVLILTARADVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRARP 127 Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +R A + ++ G+L+++ +TV +G + L E+ ++ +L+ T L+++ Sbjct: 128 AATETRAAAPAALIFGELTISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDI 187 Query: 175 LNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L L +DG D + +D I KLR++ +A+ + I+T+WGRGY+ +A DE Sbjct: 188 LKQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDE 241 >gi|159898827|ref|YP_001545074.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891866|gb|ABX04946.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 225 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 63/208 (30%), Positives = 114/208 (54%), Gaps = 2/208 (0%) Query: 13 AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72 AH ++L L+ F Y+ G G+ L + ++ ++LDL L + G V + +R + Sbjct: 15 AHWMQLYLEQAGFTTYLASDGLAGLALVQQHQPSLVVLDLMLPKLDGLAVFKTIRQTS-N 73 Query: 73 TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-HAQSLIVTGD 131 TP+ +++ SS E+++ GL+ GADDY+ KPFN ELVAR+RA++RRS+ A ++ G Sbjct: 74 TPIIMVTARSSDEERIHGLELGADDYVGKPFNARELVARVRAVLRRSQPIQASQMLKRGP 133 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191 + ++L+ + V + L+ + ++ N L++E L ++ G + +D Sbjct: 134 IELDLEQHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVFAGDYAGFDRSLD 193 Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGY 219 I +LR+++ + YI TV+G GY Sbjct: 194 AHIARLRQRIEHDRTNPQYIVTVYGLGY 221 >gi|254387721|ref|ZP_05002959.1| response regulator receiver [Streptomyces clavuligerus ATCC 27064] gi|197701446|gb|EDY47258.1| response regulator receiver [Streptomyces clavuligerus ATCC 27064] Length = 217 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 114/218 (52%), Gaps = 4/218 (1%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 +++ED++ +A +E+ L+ E V V GE +E Y++DA++LD L + G EV Sbjct: 1 MVVEDERYMARVLEIGLRREAIAVDVAHDGEAALERLTVYDYDAVVLDRDLPGVHGDEVC 60 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 R + ++ V +L+ + DKV GL GADDY++KPF+ ELVAR+RA+ RRS Sbjct: 61 RRIVAMRLECRVLMLTAAGRLGDKVEGLGLGADDYLAKPFDFPELVARLRALYRRSPMAH 120 Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 ++ DL+ + + V G + LT KE ++ELL L+ E L+ +D Sbjct: 121 APVLTFADLAFDTHRRRVLRAGREVRLTPKELAVLELLMRADGGVLSAEHLLDKAWDAYA 180 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P + + + LR+KL G + T GY L Sbjct: 181 DPLTNAVRLVVHTLRRKL----GEPRLVHTAISAGYYL 214 >gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 242 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 9/234 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGFE 61 I+++EDD A++ + L L E + V ++ ++ + + D I+D+ L + GF+ Sbjct: 6 IMIVEDDPAISEMLSLNLTKEGYEVITAVSADEALKKLEEKDTDFFIVDIMLPGSMDGFD 65 Query: 62 VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++R L+ ++ +TPV ILS DKV GL+ G+DDY++KPFN EL+ARI++I RR Sbjct: 66 LIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKSIFRRQ 125 Query: 120 RGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 AQ I DL ++ + V V G+ + LT E+ ++ L+ + ++++ Sbjct: 126 AASAQMKEEGPKKITAKDLIIDTERLEVWVGGNPVSLTPLEFDLLVFLAKNEGKVFSRDV 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L+ L+ + + +DV I +LR K+ YI TV G+GY R+ K+ Sbjct: 186 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKE 239 >gi|66046603|ref|YP_236444.1| heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|63257310|gb|AAY38406.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|330970771|gb|EGH70837.1| heavy metal response regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 229 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD ++ L + V T G DG+ L +D I+LD+ L I G+ Sbjct: 1 MHILLIEDDTKTGEYLKKGLGESGYVVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A+ PV L+ ++D++RGL+ GADDY+ KPF+ EL+ RIR I+RR Sbjct: 61 QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++L + V Q I LT KE+ ++ LL R+ L++ + ++D Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++DV I +LR K+ K I TV G GYV Sbjct: 180 MNFDSDTNVVDVAIKRLRSKVDLPYPVK-LIHTVRGIGYV 218 >gi|327481402|gb|AEA84712.1| transcriptional activator CopR [Pseudomonas stutzeri DSM 4166] Length = 227 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L F V G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + PV L+ +ED+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 EVLRLVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A Q+ + DL V+L + G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 ATALQTQLQVADLQVDLLKRRATRAGQRIDLTAKEFALLELLLRRRGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + +I+V I +LR K+ + K I T G GY+L E Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDGFEPK-LIHTARGMGYMLDE 223 >gi|227489423|ref|ZP_03919739.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227541018|ref|ZP_03971067.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227090601|gb|EEI25913.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227183278|gb|EEI64250.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 233 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 125/229 (54%), Gaps = 6/229 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + +++ L+ + F+V GE+ +++ + DA ILD+ + + GFE Sbjct: 7 KVLVVDDEPNIVELLQVSLRFQGFDVVTASGGEEALKVAEESRPDAFILDVMMPGMDGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR PV L+ ++EDK+ GL GADDY+ KPF+ EE++ R+R I+RR + Sbjct: 67 LLTKLRETGHDGPVLFLTAKDAVEDKIHGLTIGADDYVVKPFSLEEVITRLRVILRRGKA 126 Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A ++ DL++N + V G + L+ E+ ++ L L ++K L++ Sbjct: 127 EETEEASGVLTYADLTLNDETHEVTKAGTIVDLSPTEFNLLRYLMLNAEVVVSKAKILDN 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ + +++ +I LR+K+ I+TV G GYVLR+ K Sbjct: 187 VWHYDFGGDGNVVESYISYLRRKIDTQE--PQLIQTVRGVGYVLRQPRK 233 >gi|222107155|ref|YP_002547946.1| two component response regulator [Agrobacterium vitis S4] gi|221738334|gb|ACM39230.1| two component response regulator [Agrobacterium vitis S4] Length = 220 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 111/219 (50%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L +I + + V +D + + I+LDL L D G Sbjct: 1 MRVLLVEDDAVLGQAIRDHVGAAGHAVDWMKGLQDAEACTRTVAYGLILLDLRLPDGNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ LR TP+ IL+ I D++ GL SGADDY+ KPFN +EL ARI A+ RR Sbjct: 61 DFLKRLREHGDVTPIIILTAHDQISDRIEGLNSGADDYLVKPFNLDELTARISAVARRYA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I G L +N + + I L+ +E+ +++ L R ++K LY Sbjct: 121 AKPNPIIRIGTLEINPAERRIADGADSISLSSREWAVLDALLARPGAVVSKSRIEEALYA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E E ++V++ +LRKK+ GK+ + TV G GY Sbjct: 181 FGSEIESNTVEVYVSRLRKKI-----GKDRLLTVRGVGY 214 >gi|331268770|ref|YP_004395262.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125320|gb|AEB75265.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 229 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+IEDD + + +++ + +NV G +G+ + +F I+LDL L + G Sbjct: 4 INILVIEDDNDINKMLSKLIEKKGYNVKQAYSGTEGMLYIESLDFQLILLDLMLPGMTGE 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 E+++ +R K P+ ++S E K+ + GADDY++KPF+ +EL ARI A +RR Sbjct: 64 ELIKKIRKTK-KLPIIVISAKLDKEIKLELFKLGADDYVTKPFDIDELSARIDANLRRYI 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + + IV D+ +N +AK V V G + LT +E+ ++ELL +K Sbjct: 123 DFNNSSNGEKDIVHKDIILNKEAKEVLVSGQELSLTSREFNILELLLTHPKKVFSKANLF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + ++V I LR KL+ A+ + YIETVWG GY L+ Sbjct: 183 ESVWGDEYLGDENTVNVHISNLRNKLNKASPNEEYIETVWGMGYKLK 229 >gi|326791727|ref|YP_004309548.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326542491|gb|ADZ84350.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 226 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL IEDD LA SI LK +N+ ++ G +G EL K +D +ILD L + G Sbjct: 1 MRILCIEDDTELAESICFHLKHVGYNIDCSEDGLEGFELVKTNTYDLVILDRMLPSLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +L+ +R + PV +++ + I D+V GL SGADDY+ KPF EEL+AR+ A+ RR S Sbjct: 61 SLLKRIRALNLQLPVIMVTALDGIGDRVAGLNSGADDYLVKPFAIEELIARVGALSRRPS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I D++++L + L+ KE + + N LT+E+ L+ ++ Sbjct: 121 QMINTEQIHFADVTLDLLGLCLTGPLRSCSLSKKEGDLADFFLRHPNEPLTRELLLSKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E E +D +I LR++L A G + +I+T+ GY L Sbjct: 181 GPDTEVEDGNLDNYIHFLRRRL-KAVGSELHIKTLRSIGYTL 221 >gi|253998963|ref|YP_003051026.1| winged helix family two component transcriptional regulator [Methylovorus sp. SIP3-4] gi|253985642|gb|ACT50499.1| two component transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] Length = 227 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLI+DD L ++ L+ E F+ V GE G E +D I+LD+ + + G + Sbjct: 3 KVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LRA+R K +TPV +L+ D++ GL+ GADDY+ KP E+VAR+RAI+RR++ Sbjct: 63 ALRAIRAEK-NTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRTQP 121 Query: 122 --HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK-EMFLNH 177 +AQ + +T G L++ + + E G+ + LT E+ ++E+L ++K ++ L Sbjct: 122 SDNAQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLSLQG 181 Query: 178 LYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L GR + IDV + +R+K+ A G++YI+TV+ GY L Sbjct: 182 L--GRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQL 224 >gi|229115399|ref|ZP_04244806.1| Two-component response regulator vanR [Bacillus cereus Rock1-3] gi|228668013|gb|EEL23448.1| Two-component response regulator vanR [Bacillus cereus Rock1-3] Length = 243 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + I + L E+F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 17 ILIVDDDLDIVQFINVNLTQEDFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 77 CRRIR-EKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q + + +N+ ++ V++ G I++T EY ++ L++ KN T E Sbjct: 136 NQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEIY 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I +LR K+ +I+ VWG GY Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPRFIQNVWGVGY 239 >gi|149921141|ref|ZP_01909599.1| two-component response regulator [Plesiocystis pacifica SIR-1] gi|149818028|gb|EDM77487.1| two-component response regulator [Plesiocystis pacifica SIR-1] Length = 230 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 11/226 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIP--GF 60 +++EDD+ LA ++L + E + V V + + G L + ++ A+ILD+ L D GF Sbjct: 1 MVVEDDRNLATGLKLNFELEGYTVDLVHSIRDAGAHLIESGKYAALILDVMLPDNEEGGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 + R LR A TPV +L+ I D+VRGL++GADDY+ KPF +EL+AR+R+++RR Sbjct: 61 VLCRKLRDAGDFTPVLMLTARDRISDRVRGLEAGADDYLVKPFELDELLARVRSLLRRRG 120 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S G A+ + + GD+ ++ A+ G + LT EY ++ N L+++ Sbjct: 121 WEQKSSEGPAERVHI-GDVEIDFAARVTARGGEELKLTALEYDLLRYFIENPNRVLSRQE 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + P +++D FI +LRK L + Y +V G GY Sbjct: 180 LQEKVWKLDNYPNSRMVDNFILRLRKHLEPSPKEPRYFVSVRGAGY 225 >gi|153815040|ref|ZP_01967708.1| hypothetical protein RUMTOR_01257 [Ruminococcus torques ATCC 27756] gi|331088614|ref|ZP_08337525.1| hypothetical protein HMPREF1025_01108 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847608|gb|EDK24526.1| hypothetical protein RUMTOR_01257 [Ruminococcus torques ATCC 27756] gi|330407571|gb|EGG87071.1| hypothetical protein HMPREF1025_01108 [Lachnospiraceae bacterium 3_1_46FAA] Length = 235 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 126/232 (54%), Gaps = 15/232 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IED+K + + +LK ++ V D G+ G+E+ + D I+LDLGL D+ G + Sbjct: 6 VLIIEDEKNIQTFMGKVLKRHDYQVLYADTGKQGLEMIRSRCPDLILLDLGLPDMDGCSI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R +R STP+ ++S ++ +KV L GADDYI+KPF EL+ARIRA +R H Sbjct: 66 IRDVRTWA-STPIIVISARTAEREKVAALDLGADDYITKPFGTSELLARIRASLR----H 120 Query: 123 AQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + L+ DL ++ + + ++G+ +HLT EY+++ L+ +T Sbjct: 121 SNRLLTDSTFYIRPYRHKDLILDFSKRLLTIRGNAVHLTPIEYKIVAYLAQNSGKVITYA 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L++++ + + KI+ V + +R+K+ YI T G GY + E+ Sbjct: 181 SILSNVWGPYADNDNKILRVNMANIRRKIEEDPAQPQYIFTEVGVGYRMAED 232 >gi|226315263|ref|YP_002775159.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098213|dbj|BAH46655.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++DDK + + + L +E + + G + +E + D +ILD+ + ++ G Sbjct: 3 VRILIVDDDKEIVELMAIYLSNEGYEIEKAFDGLEAMEKLEQKSIDLVILDVMMPNLDGL 62 Query: 61 EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV + R+ K ST P+ + S ++ DK+ GL +GADDY++KPFN E++AR+++++RRS Sbjct: 63 EVTK--RIRKNSTIPILMASAKTNDMDKILGLMTGADDYVAKPFNPLEVIARVKSLLRRS 120 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S +I G L ++ + V+ +G I LT E+ ++ LL+ N + E Sbjct: 121 NYTQASKQDHVIEAGPLIIDKQSHFVQTKEGTPIKLTALEFSVLHLLASHPNRVFSSEEI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + K + V I LR+KL A G+ I+TVWG GY Sbjct: 181 FDRCWKMENFVSYKTVMVHISNLREKLEKATNGEKVIQTVWGVGY 225 >gi|282854823|ref|ZP_06264157.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282581969|gb|EFB87352.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314924507|gb|EFS88338.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314967282|gb|EFT11381.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981749|gb|EFT25842.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315092512|gb|EFT64488.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315102919|gb|EFT74895.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327328604|gb|EGE70364.1| DNA-binding response regulator TrcR [Propionibacterium acnes HL103PA1] Length = 243 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED+ +L + + ++ E ++V + G + + D I+LD+ L D G Sbjct: 18 IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLPDFDGL 77 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV+R +R+ + + P L+ +I ++ GL +G DDYI+KPF+ EE++AR+RA++RR Sbjct: 78 EVMRQIRMNQPTVPAVFLTAKDAISGRIAGLTAGGDDYITKPFSLEEVIARLRALLRRAG 137 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + S++ GDL+++ D++ V G IHLT E++++ L+K L+ Sbjct: 138 ATEPKSDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++++I LRKK+ G I T+ G GYVL+ Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHTPMIHTMRGAGYVLK 240 >gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876] gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876] Length = 242 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 120/226 (53%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+ +D+K + ++ ++ E + V V GE + L ++D ILDL + I G Sbjct: 10 IRILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGI 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR K + P+ +L+ + DK+ GL GADDYI+KPF+ E+VAR++A++RR Sbjct: 70 EVCRKLR-EKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q+ I ++S+++ TV +G I LT KE +++ +L TK Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFALNPEQVFTKSQ 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + + V I KLRKK+ I+TVWG GY Sbjct: 189 LFRNVWGDNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGY 234 >gi|227510111|ref|ZP_03940160.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190490|gb|EEI70557.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 245 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 25/239 (10%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-----EFDAIILDLGLT 55 M++L+IED+K+++ + + + E ++V DGIE + +D I LDL L Sbjct: 1 MKLLMIEDNKSVSEMMSMFFQKEGWDV---SFAYDGIEAVDMFNEDPESWDMITLDLNLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 G EV + +R S P+ +L+ S D+V G + GADDY++KPF+ LVARI+A+ Sbjct: 58 KKDGMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKAL 117 Query: 116 VRRSRGHAQS--------------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIEL 160 RR+ AQ+ I T +N + + + G I LT KE++++ Sbjct: 118 QRRAHTEAQAEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNA 177 Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ + ++E L ++ + + +D I KLR+K+ G I+TVWG GY Sbjct: 178 LAQKPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERV--GPQVIQTVWGVGY 234 >gi|194290021|ref|YP_002005928.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424] gi|193223856|emb|CAQ69865.1| Putative response regulator, CheY family [Cupriavidus taiwanensis LMG 19424] Length = 224 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ LA S+ L F V G L ++ +ILDLGL + G Sbjct: 1 MRILLAEDNVMLASSLSQALDQAGFTVDCMHDGHSADTLLSTQDYALLILDLGLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + PV IL+ S+ED+VRGL GADDY++KPF+ EL AR RA++RR+ Sbjct: 61 EVLRRLRQRRNPLPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSELEARARALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 GH + I G L + ++ + G + LTG+E ++E+L LR + K ++ Sbjct: 121 GHDSTQIAFGPLHYDSVSRAFLLHGQLLPLTGRERAVLEVLLLRDGRAVNKGALSEKIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL G I T+ G GY+L Sbjct: 181 IDESVNPDAIEIYVHRLRKKLD---GSGVAIVTLRGLGYLL 218 >gi|327462011|gb|EGF08340.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|332362240|gb|EGJ40040.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 234 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ +E + E + V G++ ++L K +D +ILD+ + G Sbjct: 2 MKILLAEDEQQLSRVLETAMIHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR Sbjct: 62 EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G S+N+ + + + I L GKE +M+E L L +L+ + H++ Sbjct: 122 TFTPNLLRIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179 Query: 181 GRDEPE---VKIIDVFICKLRKKL 201 +DE E + ++I LR+KL Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203 >gi|312897337|ref|ZP_07756763.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310621555|gb|EFQ05089.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 227 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +IE D A I L +E+++ LG + FD I+LD+ L DI G Sbjct: 5 QIFIIEGDAKTAAYIRQELATEHYDCTTDTLGLSALNKLAGNRFDLIVLDIRLLDISGLL 64 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R KIS PV I+S I KV+ + GA+DY++KPFN EL ARI A++ + Sbjct: 65 LCKEIR--KISAVPVLIISDCDDITTKVKAFEYGANDYLTKPFNCRELSARIHALLHSGK 122 Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + DL V+LDA V ++ RI LT KE+ ++ L KN L++ L H Sbjct: 123 AVCNNFRRTLTLKDLLVDLDAHEVYIKERRISLTKKEFSLLTFLIHNKNIVLSRHSILEH 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ ++DV+I LR KL ++YI TV G GY++RE Sbjct: 183 VWGYDFFGTTNVVDVYIRYLRSKLCTDR-HESYITTVRGVGYIVRE 227 >gi|308185491|ref|YP_003929623.1| two-component system regulatory protein [Pantoea vagans C9-1] gi|308055771|gb|ADO07941.1| two-component system regulatory protein [Pantoea vagans C9-1] Length = 231 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IEDD A +E LK EN+ V + G G+E ++ D I+LD+ L + G E Sbjct: 5 RVLIIEDDADAAGVLEAYLKRENYEVMIAGDGPGGLETAGRWQPDLILLDIMLPGMNGTE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL ALR + TPV +++ M D++ L+ GADDY+ KP++ E+VAR++A++RRS+ Sbjct: 65 VLAALR-RRDDTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRSQS 123 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 HA + +V L++ + R+ LT E+ ++ L T+ Sbjct: 124 HAPAAESLRWAGLVVDPLALTAVVASDSDAPRRLDLTPTEFSLLVTLMRAPTRPFTRLFL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L H D E +++D + LR+KL AAG + + V GY R+ Sbjct: 184 LEHCLPESDALE-RVVDTHVYNLRRKL-EAAGISDVLPAVRSVGYRFRQ 230 >gi|289805396|ref|ZP_06536025.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 175 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 99/174 (56%), Gaps = 5/174 (2%) Query: 48 IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107 ++LDLGL D G L +R K + PV IL+ ++ D++ GL GADDY+ KPF EE Sbjct: 1 MVLDLGLPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKPFALEE 60 Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 L ARIRA++RR +S + G+L++N+ G + LT KEY ++ L L+ + Sbjct: 61 LHARIRALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGS 120 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +E+ N +Y+ +EP ++V I LR K+ GK+ I TV GY+L Sbjct: 121 PVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRRFGYML 169 >gi|116253844|ref|YP_769682.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258492|emb|CAK09596.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 225 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ ALA + +L+ V V G + FD +ILDL L ++ G Sbjct: 1 MRILLTEDNIALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVILDLNLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R + V IL+ + E++V+GL GADDY+ KPF+ E AR+R ++RR Sbjct: 61 DVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G ++ +L+++T + + +E ++E+L +R + KE + L Sbjct: 121 GLRSATVGFGGITFDLNSRTFSSGDTPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ I+ ++ +LRK+LS ++T G GY L Sbjct: 181 FDDDISANAIEQYVSRLRKRLSPYG---LTVKTARGIGYYL 218 >gi|319408250|emb|CBI81903.1| two-component response regulator [Bartonella schoenbuchensis R1] Length = 228 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 12/234 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ +E + + G+ G L + +D +++D L G Sbjct: 1 MKILVIEDDRETGRYLEKAFLEVGYTADIACDGDTGYSLAETGNYDVMVVDRMLPHRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 ++ LR TPV ILS + ++D+V GL++G DDY++KP+ EL+ARI + RR S Sbjct: 61 SIVSELRAKGNETPVLILSALGQVDDRVTGLRAGGDDYLTKPYAFLELLARIEVLQRRKS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ G+L ++ A TV+ G I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGGINIILQPREFRLLEYLMRYAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAKDET 229 D +P+ +IDV I +LR K+ K++ + TV G GY+L+ A D+T Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDIPLLHTVRGAGYMLK--APDKT 227 >gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus polymyxa SC2] Length = 233 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ +A +E+ L+ E + V G DG+E +D ++LD+ + I G E+ Sbjct: 5 ILIVEDEEKIARLLEIELEFEGYQVSKEKNGIDGLETYCKGSWDLVLLDIMIPGINGIEL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R + PV +L+ SSI DKV GL GA+DY++KPF EEL+AR+RA +R Sbjct: 65 LRRIRKHDANVPVILLTAKSSIADKVEGLDLGANDYVTKPFVIEELLARVRAALRVGATK 124 Query: 123 AQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +L V GDL ++ + V H I LT +E+ ++ L + L++E L Sbjct: 125 DMALQVADQWLSAGDLRLHEGTREVLRGEHNIELTPREFDLLVHLLRHQRQVLSREQLLE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++ + ++DV+I +R K+ I TV G GYVL+E+ Sbjct: 185 NVWGIDYIGDTNVVDVYIRYVRNKIDPTRQLPELIHTVRGIGYVLKES 232 >gi|239940925|ref|ZP_04692862.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987401|ref|ZP_04708065.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291444359|ref|ZP_06583749.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291347306|gb|EFE74210.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 219 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 127/221 (57%), Gaps = 6/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED++ +A ++ L++ F V + G+ + FD ++LD+GL GF Sbjct: 3 RILIAEDEERIASFVQKGLRANGFTTVVAEDGDLALGHALTGGFDLMVLDIGLPGRDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A+++ PV +L+ S+ D V GL+ GADD+++KPF EEL+AR+R R + Sbjct: 63 VLRELREARVTLPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRRRTAAR 122 Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +++ +G L+++L + + + LT +E+ ++E+ L++E L+H++ Sbjct: 123 APEVTMLRSGTLALDLRTRRARAEDRTVDLTAREFVLLEMFLRHPGQVLSREQILSHVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P I+DV++ LR+KL G +ETV G GY L Sbjct: 183 YDFDPGSNIVDVYVRALRRKL-----GAERLETVRGMGYRL 218 >gi|255658536|ref|ZP_05403945.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM 20544] gi|260849340|gb|EEX69347.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM 20544] Length = 230 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RI ++ED++ +A +++ L+ E F + + G E FD ++LD+ L + G Sbjct: 5 VRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGM 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + +R S P+ +L+ +EDKV GL GADDY++KPF EEL+ARIR +R+ Sbjct: 65 TICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHV 123 Query: 121 GHAQSLIVTGDLSV-NL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + L V NL VEV G +HLT KEY ++E + K T LT++ L Sbjct: 124 PDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQIL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + ++DV+I LR KL + K YI TV G GY ++E Sbjct: 184 EKVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEK-YIYTVRGVGYAVKE 230 >gi|197120859|ref|YP_002132810.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196170708|gb|ACG71681.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 230 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD ++ ++L L E + V GE G++L + + D +++D+ L + G E Sbjct: 4 RILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMGGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V+R +R P+ ILS + DKV GLQ GADDY+ KPF +EL+ARI A++RR R Sbjct: 64 VVREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRRA 123 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +++ G + ++LDA+ V G + LT +E+ ++ + ++E + Sbjct: 124 RGEGVQPKAIRRAGGIELDLDARRALVDGRALDLTSREFDLLAFFVTHPDRVYSREQLME 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + +D F+ +LR + + A ++ETV G GY Sbjct: 184 AVWGSRYFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGY 226 >gi|59713394|ref|YP_206169.1| transcriptional regulator [Vibrio fischeri ES114] gi|59481642|gb|AAW87281.1| transcriptional regulator [Vibrio fischeri ES114] Length = 228 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 2/226 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED + L S+ + L + F V T G G+ + ++D IILDL L ++ G Sbjct: 1 MKILLIEDSEHLRRSLIVGLSNLGFTVDETGDGSKGLSMAITNDYDFIILDLMLPNVDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+++R V ILS S ED+V GL SGADDY+ KPF+ +EL ARI + RR + Sbjct: 61 TLLKSIRKMGNDVKVIILSAKSQPEDRVEGLMSGADDYLVKPFSFDELHARILTVGRRGQ 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I G ++L KT+E I LT EY++IE L L KN +T E +++ Sbjct: 121 VKNNDDDINIGLFKLDLAKKTLEFDTKFIDLTKNEYKIIECLFLSKNQVMTTENISDYVV 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 D I+ + +RKK+ A GG+ ++ G GY + ++A Sbjct: 181 GSFDSLSKNTIESHLSSVRKKVK-ALGGELPVKNKRGFGYYVEKDA 225 >gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917] gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917] Length = 256 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + V + GE +EL D ++LD+ L + GF V Sbjct: 14 ILVVDDEPAVRRVLVMRLQLAGYQVICAEDGEKALELFHRDSPDLVVLDVMLPKLDGFAV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI +I+RR RG Sbjct: 74 CRRLR-AESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRIGRG 132 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A Q ++ GDL V+ + + V RI LT E+ ++ELL + + Sbjct: 133 SATAEPREVPVGQGVLRLGDLMVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPR 192 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 193 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 242 >gi|225077278|ref|ZP_03720477.1| hypothetical protein NEIFLAOT_02337 [Neisseria flavescens NRL30031/H210] gi|224951422|gb|EEG32631.1| hypothetical protein NEIFLAOT_02337 [Neisseria flavescens NRL30031/H210] Length = 225 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A ++ LK + V G + +D ++LDLGL G Sbjct: 1 MRVLLVEDDAMIAQAVSANLKDTGYAVDWVSRGSEVAAAVAAQAYDLLLLDLGLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + PV I++ + ++ GL GADDYI KPF+ EL AR+RA++RR Sbjct: 61 DVLAQIRSGGCTIPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRRHG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G AQ+L+ G +++N EV G I L+ KE+ +++ L LR L++ + + Sbjct: 121 GQAQTLLSNGIITLNPSTHQAEVVGQEQAIMLSNKEFAVLQALLLRPGMILSRSDLEDKI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 Y +E E +D I LRKKL GK I+ V G G+++ +N Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKEAIQNVRGVGWLVAQN 221 >gi|109453246|gb|ABG34103.1| PhoP [Salmonella enterica subsp. enterica] gi|109453248|gb|ABG34104.1| PhoP [Salmonella enterica subsp. enterica] gi|109453250|gb|ABG34105.1| PhoP [Salmonella enterica subsp. enterica] gi|109453252|gb|ABG34106.1| PhoP [Salmonella enterica subsp. enterica] gi|109453256|gb|ABG34108.1| PhoP [Salmonella enterica subsp. enterica] gi|109453260|gb|ABG34110.1| PhoP [Salmonella enterica subsp. enterica] gi|109453262|gb|ABG34111.1| PhoP [Salmonella enterica subsp. enterica] gi|109453264|gb|ABG34112.1| PhoP [Salmonella enterica subsp. enterica] gi|109453266|gb|ABG34113.1| PhoP [Salmonella enterica subsp. enterica] gi|109453268|gb|ABG34114.1| PhoP [Salmonella enterica subsp. salamae] gi|109453270|gb|ABG34115.1| PhoP [Salmonella enterica subsp. salamae] gi|109453272|gb|ABG34116.1| PhoP [Salmonella enterica subsp. salamae] gi|109453274|gb|ABG34117.1| PhoP [Salmonella enterica subsp. salamae] gi|109453276|gb|ABG34118.1| PhoP [Salmonella enterica subsp. salamae] gi|109453278|gb|ABG34119.1| PhoP [Salmonella enterica subsp. salamae] gi|109453280|gb|ABG34120.1| PhoP [Salmonella enterica subsp. salamae] gi|109453284|gb|ABG34122.1| PhoP [Salmonella enterica subsp. salamae] gi|109453286|gb|ABG34123.1| PhoP [Salmonella enterica subsp. salamae] gi|109453308|gb|ABG34134.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453310|gb|ABG34135.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453314|gb|ABG34137.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453324|gb|ABG34142.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453328|gb|ABG34144.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453330|gb|ABG34145.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453332|gb|ABG34146.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453334|gb|ABG34147.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453336|gb|ABG34148.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453338|gb|ABG34149.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453340|gb|ABG34150.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453342|gb|ABG34151.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453344|gb|ABG34152.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453346|gb|ABG34153.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453348|gb|ABG34154.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453350|gb|ABG34155.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453352|gb|ABG34156.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453354|gb|ABG34157.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453356|gb|ABG34158.1| PhoP [Salmonella enterica subsp. indica] gi|109453358|gb|ABG34159.1| PhoP [Salmonella enterica subsp. indica] gi|109453360|gb|ABG34160.1| PhoP [Salmonella enterica subsp. indica] gi|109453362|gb|ABG34161.1| PhoP [Salmonella enterica subsp. indica] gi|109453364|gb|ABG34162.1| PhoP [Salmonella enterica subsp. indica] gi|109453366|gb|ABG34163.1| PhoP [Salmonella enterica subsp. indica] gi|109453368|gb|ABG34164.1| PhoP [Salmonella bongori] gi|109453370|gb|ABG34165.1| PhoP [Salmonella bongori] gi|109453372|gb|ABG34166.1| PhoP [Salmonella bongori] gi|109453376|gb|ABG34168.1| PhoP [Salmonella bongori] gi|109453378|gb|ABG34169.1| PhoP [Salmonella bongori] Length = 213 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214 LY + E IDV + +LRKK+ A + I TV Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213 >gi|119716293|ref|YP_923258.1| two component transcriptional regulator [Nocardioides sp. JS614] gi|119536954|gb|ABL81571.1| two component transcriptional regulator, winged helix family [Nocardioides sp. JS614] Length = 228 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD LA +E L + V V G E L D +LD L + G Sbjct: 1 MRILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVALLDWMLPGLDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR ++ P+ +L+ + D+V GL +GADDY+ KPF+ +EL+AR+RA+ RR Sbjct: 61 VTVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRALYRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + GDL V+ A+ V G I L+ +E+ ++ LL +++ M L+ ++ Sbjct: 121 SLVGEAPVQLGDLVVDPVARRVTRGGVEIVLSAREFDILHLLVSHAGRVVSRLMILDEVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG + +IDV + +R K+ G + I T+ G GY Sbjct: 181 DGETDLRSNVIDVHLAAIRAKIDKPFGTET-ITTLRGVGY 219 >gi|293375797|ref|ZP_06622067.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292645574|gb|EFF63614.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 228 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 11/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIED+ + +++ L+ E + V+V G +G+ + + + D +ILDL L D+ G Sbjct: 1 MNILLIEDEVLVLDALKAYLEREQYRVFVATTGNEGLTIFEKEKIDFVILDLMLPDMKGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R A + +L+ S+E ++ GL GADDY+ KPF+ ELVARI+ +VRR Sbjct: 61 EICQQIR-AISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRMN 119 Query: 121 GHAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G Q++ + D L ++ + V+VQ + T E+ ++ LL K LT+E +N + Sbjct: 120 GPLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQI 179 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++G D + IDV I +RKK+ YI TV GY Sbjct: 180 LGFDFNGYD----RTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGY 220 >gi|291558106|emb|CBL35223.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 227 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 116/203 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L ED+ ++A ++ +L N+ V G D ++ + ++D IILD+ + G Sbjct: 1 MKLLFAEDEVSMAEAVTDILTYHNYTVDTVYDGADALDYARAEQYDGIILDIMMPKKSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR +TP+ +L+ + +ED++ GL GADDY+ KPF EL++R+RA++RR Sbjct: 61 EVLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRRKD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G++S+NL + ++ I L EY+++ELL L K L+ + L ++ Sbjct: 121 RFTPDIMTFGNVSLNLSSCELKGPLQSIVLPKIEYKLMELLMLNKGIYLSTDDILVKVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203 + E + V+I +RK+L+ Sbjct: 181 YESDAESGAVWVYISYVRKRLAT 203 >gi|283768598|ref|ZP_06341510.1| putative regulatory protein VanR [Bulleidia extructa W1219] gi|283104990|gb|EFC06362.1| putative regulatory protein VanR [Bulleidia extructa W1219] Length = 232 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++D+K + ++++ L E+F + G++ +E+ + + D +++D+ + + G + Sbjct: 3 RILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDGVK 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +R + + P+ LS EDK+ GL GADDYI+KPF+ EE++ARI+A +RR Sbjct: 63 ATKEIRKNQ-NIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFKE 121 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ Q + + G +++N K V V G I LT EY +++ LT + Sbjct: 122 LGSQQKDQEVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQDIYQ 181 Query: 177 HLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++EP I V I LR+K+ YI+ VWGRGY Sbjct: 182 EVW--KEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGY 224 >gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88] gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88] Length = 234 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ +A I+ ++ + V G++G E K F +++D+ + ++ G Sbjct: 4 RILIVEDDEEIALCIKEYVEKTGYEVLWASTGKEGYEEFKRENFSLLMIDIMMPEMDGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R+ P+ I+S + KV+GL GADDYI+KPF+ EL AR+ + +RR R Sbjct: 64 LCKNIRLTS-DVPILIISAKNEDGYKVKGLNIGADDYITKPFSLVELQARLESHLRRYRR 122 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + L L + + K VEV G IHLT KE++++ L++ T TK Sbjct: 123 YNGIENNEHILKFKRGLIIYQEGKYVEVDGRNIHLTSKEFELLMLMAENPKKTFTKSELY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ +D + V I +LR+KL N+IETVWG GY Sbjct: 183 EILWGEKDVHGNNTVTVHIKELREKLKENIKNPNFIETVWGVGY 226 >gi|332709036|ref|ZP_08429006.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332352225|gb|EGJ31795.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 231 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 120/231 (51%), Gaps = 14/231 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-----EFDAIILDLGLT 55 MR+LL+ED+ L +I+ ++ N YV DL +G E + ++ I D L Sbjct: 1 MRVLLVEDEPDLGAAIK---RALNIEKYVVDLVVNGTEAWGYLNNHETQYTLAIFDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G E+LR LR + P+ +L+ +ED+V GL +GADDY+ KPF EL+AR+RA+ Sbjct: 58 GLSGLELLRQLRYSNNPLPILMLTAKDRLEDRVMGLDTGADDYLVKPFLMAELLARVRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTV---EVQGHRIH--LTGKEYQMIELLSLRKNTTLT 170 RR+ + GDL ++ +TV G ++H LT KE+Q++E N +T Sbjct: 118 HRRTPLLQPQQLQVGDLILDYGNRTVYRLAANGEKLHVPLTNKEFQLLEYFMKHPNQVMT 177 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N L++ EP ++ + LR+KL + IETV G GY L Sbjct: 178 TNQIRNQLWEVNAEPISNVVAAQMRLLRRKLE-SINSSIPIETVHGLGYRL 227 >gi|309777246|ref|ZP_07672209.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915116|gb|EFP60893.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 226 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 129/222 (58%), Gaps = 9/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+L+IED++ +A + L LK + Y D GE G + + +D I+LD+ L I G Sbjct: 6 MRLLIIEDERPIAEVMMLNLKRIGYQCDYAMD-GEQGARMVEKQSYDLILLDIMLPKING 64 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E++ L +++ PV ++ S++++V+GL+ GADDY+ KPF +EL+AR+ ++RR Sbjct: 65 YELMEYL--SELEIPVIFITAKGSVQERVKGLRMGADDYLVKPFAIDELLARVDNVLRRY 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + V D++++ + V+ +G I LT KE+ ++ L KN L ++ L+ Sbjct: 123 HKSMQEIHVL-DVTIHTATRVVKKKGTVIPLTKKEFDLLLYLVQNKNIALYRDTMYEKLW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +D+ I +LRKKL+ + I+TV+ GY+L Sbjct: 182 REEDYEQTRTLDLHIQRLRKKLN----WHSVIQTVYKIGYML 219 >gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 226 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 124/219 (56%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED++ L + + V G +G++L + ++D +ILD+ L ++ GF Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV+ +R PV +L+ S+ED+V GL+ GADDY++KPF+ +EL+AR+ A++RRS Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +S++ G L+++ A+ V ++ L +E+ ++ELL +N +++ + ++ Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++DV I LR KL + TV G GY Sbjct: 181 KEYDGTSNVVDVHIKYLRDKL-RPFNLDMMVVTVRGVGY 218 >gi|254501155|ref|ZP_05113306.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222437226|gb|EEE43905.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 228 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+IEDD A+ + L D GE G+++ ++D +I+D L G Sbjct: 2 LQILVIEDDHEAANYLAKGLSELGHRADKADDGETGLQMALDRDYDILIVDRMLPKRDGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR + TPV ILS + ++D+V GL++G DDY+ KP+ EL AR+ A+ RR + Sbjct: 62 AVIEELRKSGNHTPVLILSALGQVDDRVTGLKAGGDDYLPKPYAFTELQARVEALARRPK 121 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +Q + GDL+++ A + I L +E++++E L +T+ M L ++ Sbjct: 122 SASQVETTYTVGDLTLDRMAHSCRRGDMEIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ +P+ +IDV I +LR K+ + T+ G GY +R+ A Sbjct: 182 WEYHFDPQTNVIDVHISRLRGKIDKGF-DVPLLHTIRGAGYTIRDTA 227 >gi|148556617|ref|YP_001264199.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501807|gb|ABQ70061.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 232 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 7/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLTDI 57 MR+L++ED+ +A I L+ F V D+ D + ++DAI+LDLGL D Sbjct: 8 MRLLVVEDNDRMAALIADGLRRRGF---VCDIALDLAQADDAMAGAQYDAIVLDLGLPDG 64 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G + L R + P I + ++ED+V GL +GADDY+ KP +EL ARIRA++R Sbjct: 65 DGIDWLAGRRKYQQMPPAIIQTARGALEDRVTGLDAGADDYVVKPVEVDELAARIRALLR 124 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R Q +I G L + +++ + + L+ +E ++ELL R T + +++ N Sbjct: 125 RPGVRTQPVIEVGTLCFDTASRSASIADRNVDLSRREADLLELLMRRAGTVVHRDVIENA 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 LY D ++ + +LR+KL AA + TV G GY+L++ Sbjct: 185 LYSFNDPVTPNAVEAAVSRLRRKLDEAA-MPGTLHTVRGVGYMLKDG 230 >gi|271501297|ref|YP_003334322.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270344852|gb|ACZ77617.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 224 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 128/238 (53%), Gaps = 17/238 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LL+ED LAH ++ L F V DL DG+ L + + ++LD+ L + Sbjct: 1 MRLLLVEDHPELAHWLKKALGEAGFAV---DLVGDGVAADHLLQQEAYTLVVLDVSLPRM 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L LR + PV +L+ +S+ D+V+GL GADDY++KPF EL AR+RA++R Sbjct: 58 DGLALLARLRKRGQNLPVLLLTARASVADRVKGLNLGADDYLTKPFELAELEARLRALLR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS+G Q + G+LS + D +Q + LT +E ++ L R+ ++++ Sbjct: 118 RSQGQVQDVQRLGNLSWH-DEGYFLLQDKPLALTPREQAVLHTLMQRRGRPVSRQYLYEQ 176 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235 ++ DE +D+++ ++RKKL AG I T+ G GY L C++ E+ Sbjct: 177 VFTLADEASTDSLDLYVHRIRKKL---AGSDVMIVTLRGLGYSLE-------CQHAES 224 >gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20] gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20] Length = 222 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 123/218 (56%), Gaps = 4/218 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + ++ + E + + G++ +E + FD I+LD+ + GF+ Sbjct: 3 KILIVDDDTHMRALVKTYAEIEGYLCFEAADGKETLEKLTNHSFDLILLDVMMPGKDGFQ 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L +R +TPV +++ DK+ G GADDYI+KPF+ +EL+ARI+A+++RS Sbjct: 63 TLSEIR-GSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 IV GDL VN+ + TV + G+ + LT KE+ ++ L+ + L++E L ++ Sbjct: 122 FQFEKIVFGDLEVNVFSHTVTINGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWGF 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +D I LR++L + + I+TVWG GY Sbjct: 182 DYFGDTRTVDTHIKSLRERLGDY---RELIQTVWGVGY 216 >gi|220929662|ref|YP_002506571.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999990|gb|ACL76591.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 231 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED++++ +++ K NF V GE+G+ + D ++LD+ L I GF+ Sbjct: 4 KVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGISGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ DK++GL+ GADDY+ KPFN EL+ R ++++RR G Sbjct: 64 VCETLRKEMPDVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRRLGG 123 Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + + +G + L ++ V + I LT KE+ ++++ KN T++ L+ Sbjct: 124 KSAGDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPKEFFLLKIFLENKNKAFTRDELLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + KI+DV I +LR K+ + YIETVWG GY R+ Sbjct: 184 KIWGYDYVGDTKIVDVNIRRLRSKIEDKDSHGMYIETVWGIGYRWRK 230 >gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM 16992] gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM 16992] Length = 234 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L + G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDYI+KP++ EL+AR+RA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + ++ GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 122 VADAAESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ Y+ TV G GY Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 227 >gi|325293818|ref|YP_004279682.1| two component response regulator [Agrobacterium sp. H13-3] gi|325061671|gb|ADY65362.1| two component response regulator [Agrobacterium sp. H13-3] Length = 232 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+ED++ L+ + +L+ + V V G FD +ILDL L ++ G Sbjct: 7 LRILLVEDNQVLSEGLCALLRGSGYAVDVVSDGASADAAIAAENFDLVILDLNLPEMDGI 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR++R + V IL+ + E+KV+GL GADDY+ KPF+ E AR+R ++RR+ Sbjct: 67 EVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNA 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S + G + +L ++T G + + +E ++E+L +R + KE + L Sbjct: 127 GLRSSTLSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE I+ ++ +LR++L A G ++T G GY L Sbjct: 187 FDDEISGNAIEQYVSRLRRRL--APHGLT-VKTARGIGYYL 224 >gi|313201066|ref|YP_004039724.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gi|312440382|gb|ADQ84488.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 234 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLI+DD L ++ L+ E F+ V GE G E +D I+LD+ + + G + Sbjct: 10 KVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNGID 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 LRA+R K +TPV +L+ D++ GL+ GADDY+ KP E+VAR+RAI+RR++ Sbjct: 70 ALRAIRAEK-NTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRTQP 128 Query: 122 --HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK-EMFLNH 177 +AQ + +T G L++ + + E G+ + LT E+ ++E+L ++K ++ L Sbjct: 129 SDNAQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLSLQG 188 Query: 178 LYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L GR + IDV + +R+K+ A G++YI+TV+ GY L Sbjct: 189 L--GRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQL 231 >gi|270261003|ref|ZP_06189276.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044487|gb|EFA17578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 237 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A ++L L+ E +++ G G+ + + +DA+ILDL L + G E Sbjct: 6 RILIVEDDGDIAELLQLHLRDEGYDISHAADGNQGMAMLEQGGWDALILDLMLPGVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I+S SS +V GL+ GADDY++KPF+ ELVAR++A+ RR Sbjct: 66 ICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125 Query: 122 HAQSL-IVTGDLS---VNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++L + G LS + +D EVQ +R I LT +E+ ++ + ++ L Sbjct: 126 MSRNLRMDAGTLSFDGLTIDPIAREVQLNRQPIDLTPREFDLLYFFARHPGKVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 N ++ + E ++ I +LR K+ + I TVWG GY Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRIKIESNPAEPLRILTVWGMGY 229 >gi|219523859|gb|ACL14892.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Hartford] Length = 215 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 2 MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 59 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214 LY + E IDV + +LRKK+ A + I TV Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 214 >gi|187933916|ref|YP_001884616.1| PhoP family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187722069|gb|ACD23290.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 231 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 14/232 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D++++ + I++ L EN+ V + G D I L K D I+LDL L D GF Sbjct: 1 MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV+ + P+ ILS + +K+ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 EVIHEFQSINSEIPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + +I G + + + + V + + T E+++I L+ Sbjct: 121 KAKAIGKSEVKNKTNDIIEKGFIKIIIPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 T+E L+ ++ + +D+ I ++R+KL G ++ I+T++G GY L Sbjct: 181 TREELLDKIWGYSFVGNTRAVDIHIKRIRQKL---VGNEDVIKTIYGVGYRL 229 >gi|94313751|ref|YP_586960.1| DNA-binding response regulator [Cupriavidus metallidurans CH34] gi|93357603|gb|ABF11691.1| DNA-binding response regulator in two-component regulatory system with QseC [Cupriavidus metallidurans CH34] Length = 235 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 107/221 (48%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD L ++ LK V + +DA++LDLGL D G Sbjct: 1 MRILIVEDDPMLGDGLQRGLKLIGHAVDWFGTAAEADRAIGMMHYDAVVLDLGLPDDDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R PV +L+ ++ ++ GL +GADDY+ KP +EL AR+RA+ RR+ Sbjct: 61 ALLGRWRQQGRQMPVVVLTARDAVASRISGLDAGADDYLVKPVELDELAARLRAVTRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G L A+ G + LT +E ++ELL N LT+E + LYD Sbjct: 121 GMPEPVWRHGPLEYQPAARLALWHGKAVDLTSRESMLLELLLTYPNRVLTREFLRDKLYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++V I LRKKL + T+ G GY L Sbjct: 181 WDKGSESNTLEVHIHHLRKKLH-----PGIVRTLRGAGYTL 216 >gi|320531577|ref|ZP_08032524.1| transcriptional regulatory protein CutR [Actinomyces sp. oral taxon 171 str. F0337] gi|320136213|gb|EFW28214.1| transcriptional regulatory protein CutR [Actinomyces sp. oral taxon 171 str. F0337] Length = 219 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 118/219 (53%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I L+ E V V G +E + ++D I+LD L + G Sbjct: 1 MRVLVVEDEEYLAEAIATGLRREAMAVDVVGDGASALEQVEINDYDIIVLDRDLPVVHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R + ST V +L+ +++ +V G + GADDY++KPF ELVAR+RA+ RRS+ Sbjct: 61 EVCRRVVSDHPSTRVLMLTASRTLDARVGGFELGADDYLTKPFEFPELVARLRALGRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I + ++ + V GH IHL+ KE+ ++++L + L+ E L +D Sbjct: 121 PARTPVIEAHGVRLDPFRREVYRDGHFIHLSPKEFAVLQVLMEAEGGVLSAETLLEKAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P V I LR+KL G I+TV G GY Sbjct: 181 ANADPFTNSTRVTISHLRRKL----GEPRVIQTVPGAGY 215 >gi|313888128|ref|ZP_07821802.1| response regulator receiver domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845818|gb|EFR33205.1| response regulator receiver domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 224 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED++ L SI+ L + V G++G + +D IILD+ L GF Sbjct: 1 MKILIVEDEEKLLKSIKEGLVHSGYAVDTALDGDEGSFMAFTNSYDLIILDVNLPGKNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R V +L+ +S ++D+VRGL GA+DYI KPF+ EEL ARIR+++RR Sbjct: 61 EILEEIRERDREVNVIMLTALSDVDDRVRGLDLGANDYILKPFHFEELKARIRSLLRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + S+I + + +T + + LT KE ++E L +T E ++H+++ Sbjct: 121 SISDSIIRAHGVEFDTAKRTFAIDKEALKLTAKEAGILEYLFFNLGRYVTAEELMDHVWN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ V + LRKKL + GKN I G+GY++ E Sbjct: 181 DEVDLFSNVVRVHMSALRKKLKDKL-GKNIIRNEIGKGYIIDE 222 >gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 234 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 9/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + L E ++V GE+G+EL D ++LDL L + G Sbjct: 3 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R + P+ +L+ S+ DKV GL+ GADDYI+KP++ EL+AR+RA++RR++ Sbjct: 63 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121 Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + ++ GD+S+ + V V+G + KE++++E L K +T+ Sbjct: 122 VADATESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + ++R K+ Y+ TV G GY Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 227 >gi|149278618|ref|ZP_01884754.1| two component transcriptional regulator, winged helix family protein [Pedobacter sp. BAL39] gi|149230613|gb|EDM35996.1| two component transcriptional regulator, winged helix family protein [Pedobacter sp. BAL39] Length = 234 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+ED+ L +I+L L+ E + V+ G+ +++ K F+ IILD+ L ++ GF Sbjct: 5 LRILLVEDEDHLLDAIKLNLELEGYKVHAVKDGKTALKVFKEERFNLIILDVMLPEMDGF 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V +R+ P+ L+ ++ ED+V GL+ GADDY+ KPFN EEL+ R+ +V+RS Sbjct: 65 QVCETIRLENTEVPILFLTAKNTSEDRVMGLKKGADDYLVKPFNLEELILRVGILVKRSM 124 Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A L GD ++ ++ ++ G + LT KE +++LL RKN +++E Sbjct: 125 -KADDLKEINSYKIGDKTIYFNSFELKHDDGVIVPLTKKETMLLKLLIERKNEAVSREQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L +++ P + ID FI RK Y ++ G GY Sbjct: 184 LETVWNYDVYPSTRTIDNFILTFRKYFEPDQKNPVYFHSIRGVGY 228 >gi|329901628|ref|ZP_08272867.1| Two-component system response regulator QseB [Oxalobacteraceae bacterium IMCC9480] gi|327549057|gb|EGF33661.1| Two-component system response regulator QseB [Oxalobacteraceae bacterium IMCC9480] Length = 220 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L IEDD L S+ L+ E + V G G++ + +D ++LDLGL I G Sbjct: 1 MRLLYIEDDAMLRDSVSKGLQHEGYTVDAVGDGRSGLQAMTTHAYDLLLLDLGLPRIDGN 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR + PV IL+ +I D VR L +GADDY+ KPF+ +EL AR++A++RR Sbjct: 61 AVLAALRQRGDTIPVLILTARDAIADCVRSLNAGADDYLVKPFDLQELAARVQALLRRRA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +L+ G L +N V + G + L+ +E+ +++ L R L+ +Y Sbjct: 121 GRADALVRHGALELNTTTHAVTLGGAGVALSAREFAVLQALLERPGAILSVPQLEEKIYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE ++V+I LRKKL G I V G GY++ Sbjct: 181 WGDEIGSNTVEVYIHGLRKKL-----GAGLIGNVRGVGYMM 216 >gi|320333134|ref|YP_004169845.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754423|gb|ADV66180.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 222 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 119/221 (53%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ + ++ L+ + V G G+ + D +ILDLGL D G E Sbjct: 4 RILLIEDNPDITRVVQYELEQSGYRVLSAPDGITGLTSARENNPDLVILDLGLPDFDGAE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR + P+ IL+ M +++ KV L++GADDY++KPF+ EELVAR++ +R + Sbjct: 64 IARRLRKTS-AVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQ- 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 H + +I G L ++ + GH + L+ KE+ ++ L+ + +++ +++G Sbjct: 122 HGE-VIQIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++DV + +R KL + G I TV G GY L+ Sbjct: 181 ELPSNSNVVDVHMANMRAKLRD-LDGYGIIRTVRGIGYALK 220 >gi|260752408|ref|YP_003225301.1| two component transcriptional regulator PhoB, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551771|gb|ACV74717.1| two component transcriptional regulator PhoB, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 231 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL+EDD ALA ++ +NF V T G++ + L + D ++LD + G Sbjct: 4 LRLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGI 63 Query: 61 EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV R LR + P+ +L+ +D++RGL++GADDY++KPF+ ELVAR+ A++RR Sbjct: 64 EVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123 Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ + D+ ++L + V+ G + + E++++ L ++E L++ Sbjct: 124 IRPALSKEQLTYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDY 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + E++ +DV I +LRK L N G + I TV GY L Sbjct: 184 IWGQDSDIELRTVDVHIRRLRKAL-NRDGLPDLIRTVRSAGYAL 226 >gi|295399015|ref|ZP_06808997.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110379|ref|YP_003988695.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978481|gb|EFG54077.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215480|gb|ADP74084.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 238 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 129/228 (56%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D++ + +++ L+ EN+ + D G+D + ++D I+LDL L G Sbjct: 5 VKILVVDDEERIRRLLKMYLERENYIIDEADNGDDALTKALENDYDVILLDLMLPGRDGI 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 65 EVCKEIREKK-ATPIIMLTAKGEESNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAA 123 Query: 121 G--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ ++V L+++ DA V V G ++LT KEY+++ L+ + +E Sbjct: 124 NTMYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLAKSPDKVFDRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219 L ++ +++ +D I +LR+KL+ + I TVWG GY Sbjct: 184 QLLKEVWHYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGY 231 >gi|167035362|ref|YP_001670593.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|166861850|gb|ABZ00258.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 224 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 126/222 (56%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ A ++ L+ + V G DG+ L + ++ +ILD+ L ++ G+ Sbjct: 1 MRLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYELVILDVNLPELDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR A+ +T + +L+ + D+V+GL GADDY+ KPF EL+ARIR+++RR+ Sbjct: 61 TVLQRLR-AESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q S + DL ++ G RI LT KE+ ++ LL + L++ ++ ++ Sbjct: 120 QQLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFDNK-LIHTLRGVGYVL 220 >gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Frankia alni ACN14a] gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Frankia alni ACN14a] Length = 240 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 14/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ F+V G ++L D +ILD+ L D+ GFE Sbjct: 6 RVLVVDDEPNIVDLLRMALRFHGFDVLTAATGRSALQLAVQARPDLMILDVMLPDVDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR S PV L+ + DK+ GL G DDY++KPF +ELVAR+RA++RR+ Sbjct: 66 VCRTLRAGGQSVPVVYLTARDAHRDKIAGLTYGGDDYVTKPFAVDELVARVRAVLRRTSP 125 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + D+ ++ D V G I L+ E+ ++ N L++ Sbjct: 126 PRPEPAPDPPATTLRFADVELDPDTHVVRRAGEPIELSPTEFTLLRYFLTNPNRVLSRVQ 185 Query: 174 FLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+ + YD EP V +D ++ LR+KL G + I T G GY LR A Sbjct: 186 ILDAVWSYDFAGEPTV--VDQYVSYLRRKLGRH--GPSLIHTQRGFGYALRLPA 235 >gi|94972032|ref|YP_594072.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554083|gb|ABF43998.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 244 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD A+ + + L+ + F V G + L + D +LD L + G E+ Sbjct: 18 VLIVDDDPAILEILRVYLRQDGFRVLEAREGAQALSLLP--QADVAVLDWMLPGMTGLEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R P+ +L+ EDK+ GL+ GADDY++KPF+ E+VAR++ ++RR Sbjct: 76 ARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRRM--G 133 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + +I G+L +++ A+ ++G + L+ E+ ++ L+ T+E L ++ G Sbjct: 134 VREVIEHGELHLDVRARAATLRGEALGLSKLEFDLLFTLAQYPGLAWTRERLLERVW-GV 192 Query: 183 DEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 D P + +++DV I LR+KL + A YIETV G GY REN + Sbjct: 193 DYPRMERVVDVHITGLRRKLGDHAEHPRYIETVRGVGYRFRENGQ 237 >gi|327395749|dbj|BAK13171.1| transcriptional regulatory protein CpxR [Pantoea ananatis AJ13355] Length = 249 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E F V V GE + L D ++LD+ + G + Sbjct: 20 KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLLD-NSIDLLLLDVMMPKKNGID 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 79 TLKELR-QQYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 137 Query: 122 HAQ-------SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q S + D L +N + + LTG E+ ++ LL+ +++E Sbjct: 138 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDSETLDLTGTEFTLLYLLAQHLGQVVSREH 197 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL + G + +T+ GRGY++ Sbjct: 198 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRRDGHPWFKTLRGRGYLM 245 >gi|326692153|ref|ZP_08229158.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ LK+E + + TD E +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDIEIAELLEIYLKNEGYEPIMATDGKEALSKLNTNPDIALMILDVMMPNMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+R+++RR+ Sbjct: 61 LEVVKTVR-KDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q ++ G L +N D+ V+ G ++LT E+ ++ LL+ N + + Sbjct: 120 ENAVQDQTPDVLDIGSLIINKDSHEVKTSDGDLVNLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G I+TVWG GY + N Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229 >gi|288960589|ref|YP_003450929.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288912897|dbj|BAI74385.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 224 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED + LA +I L+ + + G EL E+ +ILDL L G Sbjct: 1 MRILVVEDTEDLADAIIQRLRKHGYAIDWAADGYQAEELLAGEEYQLVILDLMLPGPDGQ 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR TPV +++ S ++ KV L GADDY+ KPF+ EL AR RA++RR Sbjct: 61 TLLRQLRRKGDQTPVLVVTARSRVDTKVDALDLGADDYVVKPFDFRELEARCRALLRRHH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A S V G+L + K V V+ + L+ +E++++EL +TK+ ++ L Sbjct: 121 GIATSEQVFGNLVFDTATKKVTVEAQAVDLSAREFRLLELFLSNLKRVMTKDTLIDRLC- 179 Query: 181 GRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 D+P I++++ +LR+KL A+ I TV G+GYV Sbjct: 180 SLDQPVAPNAIELYVSRLRRKLDRAS---VVIRTVHGQGYV 217 >gi|256848291|ref|ZP_05553734.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714889|gb|EEU29867.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 222 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 110/179 (61%), Gaps = 1/179 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ L+ + + + + ++V + G+ ++L K +D +I D+ + G Sbjct: 1 MRILLAEDEAQLSRVLTMAMTNAGYHVDHAENGQRAVDLAKDNAYDVMIFDIMMPVKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ +R T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR+ Sbjct: 61 EALKEIRATGDRTYVMMLTAMSEVDDKVTGLDAGADDYMTKPFSLKELLARLRSLERRNE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q ++ GDL+++ + +T+ V + I LT KE ++++ L L N L+ LNH + Sbjct: 121 GLDQDVLQFGDLTIDNNQQTL-VSNNSISLTSKEARLLQYLILNANKQLSINELLNHTW 178 >gi|42519762|ref|NP_965692.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|116630289|ref|YP_815511.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|227889299|ref|ZP_04007104.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|238853710|ref|ZP_04644077.1| regulatory protein VanR [Lactobacillus gasseri 202-4] gi|268320126|ref|YP_003293782.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|300362908|ref|ZP_07059078.1| response regulator [Lactobacillus gasseri JV-V03] gi|41584052|gb|AAS09658.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|116095871|gb|ABJ61023.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|227850101|gb|EEJ60187.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|238833646|gb|EEQ25916.1| regulatory protein VanR [Lactobacillus gasseri 202-4] gi|262398501|emb|CAX67515.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|300352958|gb|EFJ68836.1| response regulator [Lactobacillus gasseri JV-V03] gi|329668013|gb|AEB93961.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 228 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 124/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ + +L E +ILD+ + + G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ ++S +S DK++GL +GADDY+ KPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVR-KDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L +N D+ V+ + G I LT E+ ++ +L+ N + + Sbjct: 120 QKEVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYMLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGY 224 >gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 231 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED++AL + L++E F V G+D L D ++LD L + G Sbjct: 1 MQVLIVEDEEALTTLLRYNLEAEGFLVDSAARGDDAELLLAERIPDLVLLDWMLPGLSGI 60 Query: 61 EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E+ R +R + + PV +L+ D+VRGL +GADDYI KPF+ EL+ARIRA++RR Sbjct: 61 ELCRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLRR 120 Query: 119 SR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ H + GDL ++ V G +HL E++++E L L ++E L+ Sbjct: 121 AKPAHVSDRLAAGDLELDRTGHRVRRGGEELHLGPTEFRLLEFLMLAPGRVFSREQLLDG 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + + +DV + +LRK L N + I TV G GY E Sbjct: 181 VWGHDVYIDERTVDVHVGRLRKAL-NGPRQADPIRTVRGSGYAFDET 226 >gi|327402556|ref|YP_004343394.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327318064|gb|AEA42556.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 225 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 125/220 (56%), Gaps = 6/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ + +E+ L+S ++ V + + G++G+ + D IILDLGL D G V Sbjct: 6 ILIIDDEPHIRKLLEINLESNDYKVSMAETGQEGLLKAVNHPPDLIILDLGLPDKNGHIV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR P+ ILS + E V+ L +GA+DY++KPF +EL+ARIR+ +R S Sbjct: 66 LKELR-EWYGKPIIILSAQNEEESIVKALDNGANDYLTKPFRSQELLARIRSGIRHSE-- 122 Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q++I T GD+ ++L A+ V+ +G + LT EY ++ LL+ LT + L ++ Sbjct: 123 SQTVITTMEFGDIELDLTARVVKKRGQEVKLTFTEYSLLVLLAKYAGKVLTHQFILKEVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + VF+ ++RKK+ ++ T GY Sbjct: 183 GPGYQMETQYLRVFVAQIRKKIEENPNDPKHLLTESRVGY 222 >gi|310779378|ref|YP_003967711.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309748701|gb|ADO83363.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 230 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 10/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + + I+ +L+ EN + V G++ L FD IILD+ L D GF++ Sbjct: 6 ILIVDDDIKICNLIKEVLEPENISTTVATTGKEAQSLLISKTFDLIILDIMLEDTDGFQL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 +R ++V KI TP+ L+G DK+ GADDYI+KPF+ L+AR++A +RR R Sbjct: 66 MRNIQVEKIDTPIIFLTGKQQDYDKILAFGMGADDYITKPFSVSVLIARVKAHLRRGDRV 125 Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 L +V +NLD + G I L+ KE ++++ N TK+ Sbjct: 126 KELQLSSKKLVKEPFILNLDTYQLFKNGKEIFLSAKEIKIMKFFMENPNIIFTKDQLYEK 185 Query: 178 LYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ D V+ V+I LRKK+ + Y++T WG GY Sbjct: 186 IWNDVFIDNNSVR---VYILNLRKKIEDNPQKPKYLKTAWGIGY 226 >gi|311744153|ref|ZP_07717958.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312508|gb|EFQ82420.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 219 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 6/219 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ +A + L++ F V G GI+ EFD ++LD+GL GFE Sbjct: 3 RILIVEDEERIASFVAKGLRAHGFTPTVVADGITGIDYAVSGEFDLVVLDIGLPGADGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE-LVARIRAIVRRSR 120 VL LR + PV +L+ S+ D V L+ GA DY+SKPF +E L + S Sbjct: 63 VLERLRRERPGLPVIVLTARDSVTDTVAALEGGAADYMSKPFRFDELLARVRLRLRVASE 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + GD+ ++L + V G + L+ +E+ + E+L + L++E L+ ++ Sbjct: 123 PAADDAVEVGDVRLDLRTRRTTVAGREVDLSAREFTLAEVLMRHRGQVLSREQLLSQVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P ++DV++ LRKKL G + + TV G GY Sbjct: 183 YDFDPGSNVVDVYVGYLRKKL-----GADLVSTVRGVGY 216 >gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 233 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D++ + ++ L+ E++ V GE+ I+L K F IILDL L + G Sbjct: 5 FKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGE 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV +R + + P+ +L+ EDK+ GL GADDY++KPF+ ELVAR++A++RR+ Sbjct: 65 EVCSKIRESS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAY 123 Query: 120 RGH---AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RG A+ LI+ GDL V++ V +G + LT E++++ L T+E + Sbjct: 124 RGKYPLAEHLILNDGDLEVDIRKMKVLKKGKVVTLTPYEFKVLVSLLNNPGQVFTREQLV 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 184 EQAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 227 >gi|37526697|ref|NP_930041.1| DNA-binding transcriptional regulator PhoP [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786129|emb|CAE15181.1| Two-component response regulator PhoP [Photorhabdus luminescens subsp. laumondii TTO1] Length = 222 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 9/223 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY----EFDAIILDLGLTD 56 MRIL++ED+ L H + + L+ ++ D + E +Y E D I+DLGL Sbjct: 1 MRILIVEDNMLLRHHLTVQLRDTG---HLVDAAANAKE-ADYYLVESEPDIAIVDLGLPG 56 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G ++R R P+ +L+ S ++KV L +GADDY++KPF+ EE++AR++A++ Sbjct: 57 EDGLSLIRRWRQKDEKLPILVLTARESWQEKVTVLDAGADDYVTKPFHLEEIIARMQALL 116 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RR+ G +I ++L K V G + LT EY++IE+L + +TKE + Sbjct: 117 RRNNGLVSQIIEFPPFKIDLSRKEFTVYGESVKLTAFEYRIIEILMCNSDKVVTKESLMR 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV I +LRKK+ + + I TV G+GY Sbjct: 177 QLYPDAELREGHSIDVLIGRLRKKILDIWPYEA-IVTVRGQGY 218 >gi|325126518|gb|ADY85848.1| Two-component response regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 228 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 124/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DD + + + LK+E + G++ + L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTRLSTTPDIALMILDVMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IDVVKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +G ++ G L +N D+ V+ V+G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGY 224 >gi|157164687|ref|YP_001466781.1| extracellular solute-binding protein [Campylobacter concisus 13826] gi|112800153|gb|EAT97497.1| DNA-binding response regulator [Campylobacter concisus 13826] Length = 220 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL+EDD+ L I L ++V T+ +D ++L FD +ILD+ L GF Sbjct: 2 VRILLVEDDETLLDLISEYLGENGYDVTTTNNAKDALDLAYERNFDLLILDVKLPQGDGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L +LR ++TP + +++I+D +G +SG DDY+ KPF +EL+ R++A+++R+ Sbjct: 62 SLLSSLRELGVTTPSIFTTSLNTIDDLEKGYKSGCDDYLKKPFELKELLIRMQALIKRNF 121 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 H + + + DL + +KT+ G ++++ KE ++ L K LTK+ N + Sbjct: 122 SHQNGEDIKILDDLCFHPQSKTLSKNGENVNISSKESDLLALFLQNKGKILTKDEIFNKI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + +EP + V+I LR+ L GK+ I G GY+ Sbjct: 182 WKFDEEPSELSLRVYIKNLRQIL-----GKDAILNKRGDGYI 218 >gi|160932807|ref|ZP_02080196.1| hypothetical protein CLOLEP_01648 [Clostridium leptum DSM 753] gi|156867881|gb|EDO61253.1| hypothetical protein CLOLEP_01648 [Clostridium leptum DSM 753] Length = 225 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ ED++ L I+ LK ++V GE+ + E+DA++LD+ + + G Sbjct: 1 MRILIAEDERDLNQLIKKRLKDAGYSVDACFDGEEVFDYLLCAEYDALVLDIMMPKMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + + PV +L+ SIED+V GL +GADDY+ KPF EEL+AR+R ++R+ Sbjct: 61 TVLKKLRREENALPVLLLTAKDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVLLRKPV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S++ DLS+++D + V + L+ KEY ++ + L+++ H++D Sbjct: 121 TEKSSILNVADLSLHVDTRRVFRGNRELQLSSKEYSLLHYMMQNAGVVLSRDKLEQHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +IDV+I LRKK+ K I TV G GYVL+++ Sbjct: 181 YDFSGGSNVIDVYIRFLRKKVDEGY-DKKLIHTVRGHGYVLKDDT 224 >gi|115374028|ref|ZP_01461317.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1] gi|310819375|ref|YP_003951733.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|115368918|gb|EAU67864.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1] gi|309392447|gb|ADO69906.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 229 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD ++ + + L+ E ++V G G+ D ++LD+ L ++ GF+ Sbjct: 7 RILVVEDDLSILTGLSINLRIEGYDVLQAQDGRVGLAKALDEAPDLVVLDIMLPELNGFD 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR TPV +LS DK+ GL GADDY+ KPF +EL+ARI+A++RR Sbjct: 67 VLKELRQRGRDTPVVMLSAKGMEPDKILGLNLGADDYVVKPFGLQELLARIKAVLRRRHP 126 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + VT GD+ V++ KTV G + LT +E++++ T ++E L+ + Sbjct: 127 ASGAPPVTFGDVEVDMVGKTVARAGKAVELTAQEFKLLTHFLAHPGRTFSREELLSGAWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + +D F+ +LR K + T+ G GY Sbjct: 187 FDYEGSARTVDNFVRQLRLKFEPDPEAPRHFLTIRGLGY 225 >gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 222 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 8/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ ++ ++ L+ + G G+ L + D +ILDLGL D+ G E Sbjct: 4 RILVIEDNPDISRVVQYELEQAGYEALTAPDGISGLTLAREEHPDLVILDLGLPDLDGAE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR S P+ IL+ M +++ KV L++GADDY++KPF EELVAR++ +R Sbjct: 64 VTRRLR-KNSSMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARVKVQLR---- 118 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H Q +I GDL ++ + +GH + L+ +E+ ++ L+ + ++ ++ Sbjct: 119 HQQHGDVIRVGDLEIHPQKRLCYFKGHEVRLSPREFDLLTFLARQPGRVYSRAEIEREVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 G ++DV + +R KL + G I TV G GY L+ Sbjct: 179 SGDLPSNSNVVDVHMANMRSKLRD-LDGYGLIRTVRGIGYALK 220 >gi|300694393|ref|YP_003750366.1| DNA-binding response regulator in two-component system [Ralstonia solanacearum PSI07] gi|299076430|emb|CBJ35746.2| DNA-binding response regulator in two-component system [Ralstonia solanacearum PSI07] Length = 232 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ + L++E + V + G +G++L + E ++LDL L + G Sbjct: 7 MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR + P+ +L+ ++ I+D+V GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 67 ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 126 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V DL ++ + V G I LT KE +ELL ++E L+++ Sbjct: 127 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 186 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++P I+DV++ +LR K+ + ++TV G GY L Sbjct: 187 WGANEDPLTNIVDVYVRRLRSKI-DEGHPVPLLKTVRGLGYRL 228 >gi|320008511|gb|ADW03361.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 219 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E F V V G +G+ L +D ++LD+ L + G+ Sbjct: 1 MRLLIVEDEKRLATSLARGLTAEGFAVDVVHDGLEGLHLAGQGVYDLVVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + ALR A TP+ +L+ D+ GL +GADDY++KPF+ LVAR+RA++RR Sbjct: 61 RICAALRAAGHETPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++ G L ++ A+ V + LT KE+ ++E L R ++K L H++D Sbjct: 121 GSASPVLTAGTLRMDTAARRVHRGEDEVTLTTKEFAVLEQLVRRAGEVVSKADILEHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I++V+I LR+KL AA I TV G GY L Sbjct: 181 FAYDGDPNIVEVYISTLRRKLGAAA-----IRTVRGAGYRL 216 >gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 238 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 127/231 (54%), Gaps = 13/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59 +IL+++D+K ++ ++ L E F V GE+G L F+E D +ILDL L I G Sbjct: 3 KILVVDDEKPISDIVKFSLSKEGFEVITAFDGEEG--LAAFHEKNPDLVILDLMLPKIDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 61 LEVCREIRKTS-HVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQ 119 Query: 120 R--------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + IV G L+++ DA V +G I LT +E++++ L+ +T+ Sbjct: 120 QLAPAETEEEKTANEIVLGALTIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITR 179 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E L ++ +V+ +DV + +LR+K+ + +I T G GY ++ Sbjct: 180 EHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYIK 230 >gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 228 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 126/223 (56%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED + L+ + +L+ E F+V + G G+ +E ++LDL L + G EV Sbjct: 4 VLIVEDQETLSEPLAFLLRKEGFDVIIAPDGPTGLREFSQHEISIVLLDLMLPGMSGTEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR + + P+ +++ + DK+ GL+ GADDY++KP++ EL+ARIRA++RR RG Sbjct: 64 CKKLRQSS-TVPIIMVTARDTEMDKIVGLELGADDYVTKPYSARELIARIRAVLRRGRGT 122 Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ G++ ++++ +V V G I + KE+ ++E L + LT+ ++ Sbjct: 123 SGPDQFDDEILEVGNVRMDVERHSVWVDGKEISMPLKEFDLLEYLMRNEGRVLTRGQLID 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ + +++ TV G GY Sbjct: 183 RVWGLDYVGDTKTLDVHVKRLRSKVEDDPSHPHHLITVRGLGY 225 >gi|37958845|gb|AAP51109.1| putative two-component response regulator [uncultured bacterium] Length = 228 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD+ +A + L+ V V + FD ++LDLGL D G Sbjct: 1 MRVLVVEDDEGIADGLRTTLRQHGAVVDVAGTVAAAWAALRSEPFDLVLLDLGLPDADGG 60 Query: 61 EVLRALRVAKI------STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114 +L LR A +TPV I++ + ++ GL GADDY+ KPF+ EL AR+RA Sbjct: 61 TLLARLRAAPADGLPEPTTPVLIMTARDQVASRIAGLDMGADDYVVKPFDSNELAARMRA 120 Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + RRSRG A ++ G+L V+ A+ V G + L+ +EY ++ L + L++ Sbjct: 121 LQRRSRGRAHPVLSCGELEVDTAARQVRRAGVVVELSVREYALLLALVEVRPRVLSRTQI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY + I+V + LR+KL N + I T+ G GY + Sbjct: 181 EERLYSFDQALDSNAIEVHVHHLRRKLGN-----DIIRTMRGVGYFI 222 >gi|17549661|ref|NP_523001.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431915|emb|CAD18593.1| probable two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 226 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ + L++E + V + G +G++L + E ++LDL L + G Sbjct: 1 MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR + P+ +L+ ++ I+D+V GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 61 ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V DL ++ + V G I LT KE +ELL ++E L+++ Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRERILSNV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++P I+DV++ +LR K+ ++TV G GY L Sbjct: 181 WGANEDPLTNIVDVYVRRLRSKIDEGQ-PVPLLKTVRGLGYRL 222 >gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115] gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 225 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+DD + ++ L E F V GE G+ + D +ILD+ L + G E Sbjct: 4 RILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAVRDRPPDLVILDVMLPGLDGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL LR + PV +L+ +++VRGL+ GADDY++KPF+ + L AR+RA +RR Sbjct: 64 VLSRLRRVDANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQLRRRET 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A +++ G+L+++ +V G I LT +E+++++ + +K + L+ + Sbjct: 124 DAPAVLRFGNLTLDPAGHSVSRDGREITLTAQEFRLLQAFMEQPERVQSKSVLLDRAWGL 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +++ ++ +LR+KL G I T+ G GYVLR+ Sbjct: 184 GYLGDPNVVETYVKQLRQKL-EGDGQTRLIHTIRGVGYVLRQG 225 >gi|188591029|ref|YP_001795629.1| DNA-binding response regulator creb [Cupriavidus taiwanensis LMG 19424] gi|170937923|emb|CAP62907.1| response regulator, CheY family [Cupriavidus taiwanensis LMG 19424] Length = 231 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++A+A +I L+++ LG D + + + D +ILD+GL D+ GFE Sbjct: 8 RILVVEDEQAIADTILYALRTDGMLAEHCTLGGDALACLRAAQADLLILDVGLPDLSGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR PV L+ D++ GL+ GADDY+ KPF+ EL AR+RAI+RR+RG Sbjct: 68 VCRTLRTFS-DAPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126 Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + D + GH + LT EY ++ L ++ ++ ++ Sbjct: 127 GGATAKPGEAAGFTHDKDGARLAYHGHWLALTRYEYLLLAWLVAHPGRIYSRAQLMDAVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221 G + + +D I LR KL +A G I T G GY L Sbjct: 187 AGALDTSDRTVDTHIKTLRAKLREVSAEGAERIRTHRGMGYSL 229 >gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 243 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 +IL+++DD + + L E F V V EDG L + D I+LDL + Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEVMV---AEDGKALNRLLLRETVDLIVLDLMMPGED 66 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+AR+ A++RR Sbjct: 67 GLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRR 126 Query: 119 SRGHAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +GD + +L + ++ G + LT E+ M++ L L+ Sbjct: 127 RPAQEAPGAPSGDNEVVTFGPFTFDLGTRALQRNGEELPLTTGEFAMLKALVRHPRQPLS 186 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L L GR+ EP + +DV + +LRK + A YI+TVWG GYV Sbjct: 187 REK-LALLARGREFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237 >gi|227328253|ref|ZP_03832277.1| two-component system response regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 226 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL++DD L + L +E F+ G++G++ ++ A+ILD+ L D+ G Sbjct: 1 MNILLVDDDVELGDMLCEYLNAEGFSTSRVLTGKEGVDGATSGDYTAMILDVMLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +VLR +R + PV +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 61 DVLRQIRKTQ-QLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +SL +GDL +N + E +G LT E+ ++ELL ++K+ Sbjct: 120 DQPSTKRDESLAASGDLVLNPATRISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELS 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R E + +DV I +R+KL G IETV GY +R Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLGVLPGNTMTIETVRSVGYRIR 226 >gi|255658861|ref|ZP_05404270.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] gi|260849265|gb|EEX69272.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] Length = 230 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ +A L++ +F V + G G+E FD +ILDL L I GF Sbjct: 3 KILIVEDDREIAELERDYLEASDFEVAIEGDGRKGVEAALAGGFDLVILDLMLPGIDGFN 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR ++ PV I+S + DK+RG GADDY++KPF+ ELVAR++A + R Sbjct: 63 VCRRLR-EELDIPVIIVSARQTDIDKIRGFGLGADDYMTKPFSPSELVARVKAHIARYEQ 121 Query: 119 -SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +R Q + + G L++ + V G IHLT +E++++ L + ++E Sbjct: 122 LTRKEQQCVARLSCGKLALEAKSHRVFKDGEEIHLTNREFELLRFLMENRGLVFSRETLF 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I ++R+K+ YIETV G GY Sbjct: 182 ERIWGLDAMGDNATVAVHINRIREKIETDPAHPAYIETVRGAGY 225 >gi|219870598|ref|YP_002474973.1| transcriptional regulatory protein CpxR/response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Haemophilus parasuis SH0165] gi|219690802|gb|ACL32025.1| transcriptional regulatory protein CpxR/response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Haemophilus parasuis SH0165] Length = 241 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 123/236 (52%), Gaps = 17/236 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD L + +L E F+++ G+D + K +D I+LD+ + + G E Sbjct: 3 KILLVDDDVDLTELLSELLSLEGFDIHTVHNGQDALTELKIQSYDLILLDVMMPILNGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ +R K STPV +LS D+V GL+ GADDY+ KPFN ELVARI+AI+RRS Sbjct: 63 TLKQVR-QKYSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRSIT 121 Query: 122 HAQSLIVTGDLSVN--LDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRK 165 S+ V VN D K ++ G +H LTG E+ ++++L Sbjct: 122 QKPSMPVETAFIVNDDDDRKLLQFGGVELHPGRQQAIYEGKDLDLTGTEFALLQILMRNP 181 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L +E+ + R P + ID+ I LRKKL + +T+ GRGY+L Sbjct: 182 GQILLRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 237 >gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum Ice1] gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum Ice1] Length = 232 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ + + L+ E V V GE + + D IILDL L + G E Sbjct: 3 KILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAALACLQEELPDLIILDLMLPRLDGLE 62 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R +R S P+ +L+ DKV GL+ GADDY++KPF+ ELVARI+A++RR+ Sbjct: 63 LCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALLRRA 122 Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L + G+L+++ D + V G + +T KE++++ L+ T+E L Sbjct: 123 TRSDVRLGGPMQVGELTIDADRYEIRVGGVKQDMTPKEFELLRWLASHPGKVFTREFLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +DV I LR+K+ G YIETV G GY R+ Sbjct: 183 KIWGYDFFGDSRTVDVHIRHLRQKVEKDPGNPRYIETVRGVGYKFRD 229 >gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 239 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + + + L+ F+V G +EL D +ILD+ L DI GFE Sbjct: 6 RVLVVDDEPNIVDLLRMALRFHGFDVLTATTGRAALELAVAARPDLMILDVMLPDIDGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR PV LS ++ DK+ GL G DDY++KPF +EL+AR+RA++RR+ Sbjct: 66 ICRRLRADGHPVPVVYLSARNAHRDKIAGLTYGGDDYVTKPFAVDELLARVRAVLRRTSP 125 Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 D+ ++ DA V G I L+ E+ ++ N L++ Sbjct: 126 PPAEPAPAPPSPLRFADVELDPDAHLVRRAGEPIDLSPTEFSLLRYFLTNPNRVLSRTQI 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ E I+D ++ LR+KL G + I T G GYVLR Sbjct: 186 LDAVWSYDYGGESTIVDQYVSYLRRKLGRH--GPSLIHTQRGFGYVLR 231 >gi|304321183|ref|YP_003854826.1| two component response regulatorT [Parvularcula bermudensis HTCC2503] gi|303300085|gb|ADM09684.1| two component response regulatorT [Parvularcula bermudensis HTCC2503] Length = 225 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD A + L+ V G+ G + + +DA ++D L I G Sbjct: 1 MKILVVEDDADAAKFLIKGLREAGHAVDHALDGDTGKNMAESGGYDAYVIDRMLPGIDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R A TP LS + ++D+V GL++G DDY+ KP+ EL+AR+ A+ RR R Sbjct: 61 TMLEMRRSAGDQTPALFLSALGEVDDRVAGLKAGGDDYLVKPYAFSELIARVEALGRR-R 119 Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G + Q+ GDL +++ +TV G ++ L +E++++E L + +T+ M L ++ Sbjct: 120 GPTNIQTTFTVGDLEMDVLTRTVRRAGKKVDLQPREFRLLEYLIRHSDQVVTRTMLLENV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +P+ +IDV I +LR K+ K ++TV G GY L Sbjct: 180 WEYHFDPQTNVIDVHISRLRSKIDRDF-DKPLLKTVRGAGYTL 221 >gi|22125688|ref|NP_669111.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis KIM 10] gi|108807885|ref|YP_651801.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis Antiqua] gi|108812159|ref|YP_647926.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis Nepal516] gi|149366402|ref|ZP_01888436.1| response regulator protein [Yersinia pestis CA88-4125] gi|165925538|ref|ZP_02221370.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Orientalis str. F1991016] gi|165938457|ref|ZP_02227014.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Orientalis str. IP275] gi|166008412|ref|ZP_02229310.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Antiqua str. E1979001] gi|166210640|ref|ZP_02236675.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Antiqua str. B42003004] gi|167401723|ref|ZP_02307214.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421718|ref|ZP_02313471.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426336|ref|ZP_02318089.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469318|ref|ZP_02334022.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis FV-1] gi|218928770|ref|YP_002346645.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis CO92] gi|229841621|ref|ZP_04461779.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843738|ref|ZP_04463881.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis biovar Orientalis str. India 195] gi|229902480|ref|ZP_04517599.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis Nepal516] gi|270490340|ref|ZP_06207414.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294504168|ref|YP_003568230.1| response regulator protein [Yersinia pestis Z176003] gi|21958603|gb|AAM85362.1|AE013782_3 transcriptional regulatory protein [Yersinia pestis KIM 10] gi|1621018|emb|CAA70004.1| PhoP protein [Yersinia pestis] gi|108775807|gb|ABG18326.1| response regulator protein [Yersinia pestis Nepal516] gi|108779798|gb|ABG13856.1| response regulator protein [Yersinia pestis Antiqua] gi|115347381|emb|CAL20279.1| response regulator protein [Yersinia pestis CO92] gi|149290776|gb|EDM40851.1| response regulator protein [Yersinia pestis CA88-4125] gi|165913572|gb|EDR32192.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Orientalis str. IP275] gi|165922647|gb|EDR39798.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Orientalis str. F1991016] gi|165992794|gb|EDR45095.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Antiqua str. E1979001] gi|166207820|gb|EDR52300.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Antiqua str. B42003004] gi|166960203|gb|EDR56224.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048828|gb|EDR60236.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054691|gb|EDR64495.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680526|gb|EEO76623.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis Nepal516] gi|229689346|gb|EEO81409.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis biovar Orientalis str. India 195] gi|229694084|gb|EEO84132.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis biovar Orientalis str. PEXU2] gi|262362285|gb|ACY59006.1| response regulator protein [Yersinia pestis D106004] gi|262366219|gb|ACY62776.1| response regulator protein [Yersinia pestis D182038] gi|270338844|gb|EFA49621.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294354627|gb|ADE64968.1| response regulator protein [Yersinia pestis Z176003] gi|320014777|gb|ADV98348.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 223 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H + + ++ V D ED E F + D I+DLGL Sbjct: 1 MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + + P+ +L+ S +DKV L++GADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I ++L + + V +I LT EY +IE L ++K+ + Sbjct: 118 RNIGLASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV + +LRKKL G+ I T+ +GY Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLLAEHQGE-VITTIRSQGY 218 >gi|332289758|ref|YP_004420610.1| DNA-binding transcriptional regulator CpxR [Gallibacterium anatis UMN179] gi|330432654|gb|AEC17713.1| DNA-binding transcriptional regulator CpxR [Gallibacterium anatis UMN179] Length = 239 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 17/235 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD + +L E+F V V GED + +D I+LD+ + + G E Sbjct: 3 KILLVDDDVEFTSLLAEVLAMESFEVEVVHNGEDALHTLDL-SYDLILLDIMMPKLGGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 L+ +R K +TPV +L+ D++ GL+ GADDY+SKPFN ELVARI+AI+RR Sbjct: 62 TLKQIR-QKYTTPVLMLTARGDDVDRILGLELGADDYLSKPFNDRELVARIKAILRRVTK 120 Query: 119 ------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166 + G Q + D+ + + V QG + LTG E+ ++ +L Sbjct: 121 VPTPPNVSHIELNNGDDQKTLYFDDIVLYPGRQQVIYQGKDLELTGTEFALLSMLIRNPG 180 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L++E+ + R P + ID+ + LRKKL + +T+ GRGY+L Sbjct: 181 HILSRELLSIEILGKRLTPFDRAIDMHMSNLRKKLPPRKDNLPWFKTLRGRGYLL 235 >gi|327399578|ref|YP_004340447.1| winged helix family two component transcriptional regulator [Hippea maritima DSM 10411] gi|327182207|gb|AEA34388.1| two component transcriptional regulator, winged helix family [Hippea maritima DSM 10411] Length = 219 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 116/215 (53%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +IEDD +A + L N + + +G++ + +++D +ILDL L ++ G +V R Sbjct: 1 MIEDDPEIAELLAEYLAKFNMKLVNFESPTEGLKALEGHKYDLLILDLSLPEMDGIDVCR 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 + I P+ + S + DKV L+ ADDY++KP+N ELVARI+A++RR++ Q Sbjct: 61 EITQRNIDIPIIVSSARNDDSDKVLALELAADDYLAKPYNPRELVARIKALLRRAKPQGQ 120 Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184 S V D + +G ++ LT EY+++ LL KN L++E L + E Sbjct: 121 SDKSDNSFVVKKDEFAIYFKGEKLDLTTAEYEILALLIDNKNRVLSREFILKNTTTMDYE 180 Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +DV I ++RKK+ + YI+++ G GY Sbjct: 181 SIDRSVDVIISRIRKKIGDDPREPKYIKSIRGIGY 215 >gi|310826081|ref|YP_003958438.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308737815|gb|ADO35475.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 227 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/227 (35%), Positives = 128/227 (56%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IEDD L+ I + D GE+G+ +D I+LDL L I G+ Sbjct: 1 MKLLIIEDDPNLSDVIRQCVAPFYQTEQAFD-GEEGLYYASQNIYDLILLDLMLPLIDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR KI TPV IL+ ++ DK +G ++GADDY+ KPF+++EL+ RI AI+RRS Sbjct: 60 EVLRQLREQKIYTPVLILTARGTMTDKTKGFRTGADDYLVKPFDRDELLLRIEAILRRST 119 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 GH + + +L V +TV V G + L GK+Y ++E L + +TK + ++ Sbjct: 120 GHYDIAALCFKELRVETMTRTVTVAGEALDLRGKQYDILEYLVSHQEQLVTKAQIFDKIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + +++V++ LR+ LS G + ++T+ G GY+L K Sbjct: 180 GFTTDTSSNVVEVYVSALRRILS-GCGYDSCLKTIRGVGYMLTSGEK 225 >gi|311743633|ref|ZP_07717439.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312763|gb|EFQ82674.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 221 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 119/217 (54%), Gaps = 2/217 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD +LA + ++L++E V G+ + + + D ++LDL L + G V Sbjct: 1 MLVVDDDASLAEMLSIVLEAEGLTAAVCRSGDKVMTAFESFRPDLVLLDLMLPGMDGMSV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R A S P+ +L+ S D V GL +GADDY++KPF ELVARI+A +RR+ Sbjct: 61 CRQIR-ATSSVPIIMLTAKSDTPDVVAGLDAGADDYLTKPFKNVELVARIKARLRRTDQL 119 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + L+ GD+ ++ TV +G + LT E+ ++ L T+E+ L ++ Sbjct: 120 GEPLVF-GDIVLDPVGHTVTRKGEPLELTPLEFDLLACLLATPEQVFTREVLLQKVWGYH 178 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + K+++V + +LR K+ + A + I TV G GY Sbjct: 179 HPGDTKLVNVHMTRLRSKIEDDADNPSVIRTVRGVGY 215 >gi|294101700|ref|YP_003553558.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] gi|293616680|gb|ADE56834.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] Length = 226 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 68/201 (33%), Positives = 112/201 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+IED+K L + F+V GE+G+E K E + I+LDL L I G Sbjct: 1 MSLLIIEDNKDLVQVLAEGFAENGFSVERAYTGEEGLEKAKNPECECIVLDLMLPGISGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + P+ IL+ S+++KV GL GADD++ KPF+ EL+AR+R ++RR+ Sbjct: 61 EVLERLRSNGATLPIIILTAKDSVDEKVEGLNKGADDFLVKPFDFRELLARVRTLLRRTS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ G ++++ A+ V + L +E+ ++ELL +N T+E ++ ++ Sbjct: 121 ELQHNLLHCGSMTIDPVARECRVDNTILPLRRREFDILELLLRHENQVFTREKIISQVWQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKL 201 + ++DV I LR KL Sbjct: 181 KEYDGTSNVVDVHIKYLRDKL 201 >gi|253579586|ref|ZP_04856855.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849087|gb|EES77048.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 224 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59 +IL+++DDK L ++++ N Y T DG+E + D I+LD+ + + G Sbjct: 4 KILVVDDDKEL---VKMLCSYFNMKQYETITATDGMEALNKIKMKPDIILLDINMPRMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R +K+ P+ L+ +DK+ GL SG DDYI+KPF+ EL ARI ++R Sbjct: 61 IEVCRLIR-SKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKRE 119 Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H Q ++ ++ K V + GHR+ T EYQ+IE LS+ KE Sbjct: 120 ERHQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYEQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + I + ++RKK+++ + K YIETVWG GY Sbjct: 180 VCGYDAEGDSRTITELVRRIRKKIADYS-EKEYIETVWGIGY 220 >gi|237798700|ref|ZP_04587161.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806133|ref|ZP_04592837.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021553|gb|EGI01610.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027246|gb|EGI07301.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 223 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LK+ V V G E+ ILD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKAAGLTVDVLHDGVAADLALSSEEYAVAILDVGLPRMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGVLVYDLDTRRFTLSDELLTLTSREQAVLEALIARPGRVMSKEQVAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+++I +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GHSVAIVTFRGLGYLL 218 >gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] Length = 233 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++++ I L L NF E K E D I+LD L + G + Sbjct: 6 ILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGMDGIDF 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ +R + PV +L+ + +K+ G GADDY++KPF+++EL+ARI+AI+RR + Sbjct: 66 LKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAILRRKK 125 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 I G+L V+ D+ V Q I L E++++ LL + KN L++E+ ++ ++ Sbjct: 126 PDFFPKQIKHGNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREIIVDKIW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + E + + IDV + +LR L + G +N IET+ G GY L + Sbjct: 186 NNESEIDARTIDVHVKRLRSTLK-SHGIENSIETIRGAGYKLSD 228 >gi|170016613|ref|YP_001727532.1| response regulator [Leuconostoc citreum KM20] gi|169803470|gb|ACA82088.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 229 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 127/230 (55%), Gaps = 7/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ LK+E + + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDIEIAELLEIYLKNEGYEPVMAADGKEAISKLNTNPDIGLMILDVMMPNMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+R+++RR+ Sbjct: 61 LEVVKIVR-KDSRVPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q ++ G L +N D+ V+ G ++LT E+ ++ LL+ N + + Sbjct: 120 DNAVQDKTPDVLDIGSLVINKDSHEVKTANGDIVNLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ K + V + LR K+ A G I+TVWG GY + N Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229 >gi|146283051|ref|YP_001173204.1| transcriptional activator CopR [Pseudomonas stutzeri A1501] gi|145571256|gb|ABP80362.1| transcriptional activator CopR [Pseudomonas stutzeri A1501] Length = 243 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 2/224 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L F V G D ++ +D +ILD+ + + G+ Sbjct: 17 MKLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGW 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R + PV L+ +ED+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 77 EVLRLVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 136 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A Q+ + DL V+L + G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 137 ATALQTQLQVADLQVDLLKRRATRAGQRIDLTAKEFALLELLLRRRGEVLPKSLIASQVW 196 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + +I+V I +LR K+ + K I T G GY+L E Sbjct: 197 DMNFDSDTNVIEVAIRRLRAKIDDGFEPK-LIHTARGMGYMLDE 239 >gi|119513152|ref|ZP_01632202.1| OmpR subfamily protein [Nodularia spumigena CCY9414] gi|119462202|gb|EAW43189.1| OmpR subfamily protein [Nodularia spumigena CCY9414] Length = 231 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 125/233 (53%), Gaps = 22/233 (9%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LC---KFYEFDAIILDLGLT 55 MRILL+ED+ L +I+ +L SE YV D DG E LC ++ ++ I+D L Sbjct: 1 MRILLVEDEADLGLAIKQVLISER---YVVDWVTDGTEAWLCIESQWTDYTVAIVDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 ++ G ++ + LR+ + PV +L+ + E++V GL +GADDY+ KPF EEL+AR+RA+ Sbjct: 58 EMSGLQLCQKLRLHQNPLPVLMLTALGQPENRVAGLDAGADDYLVKPFVMEELLARLRAL 117 Query: 116 VRRS-RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166 RRS + +L V G L VN D T V I LT KE+Q++ L N Sbjct: 118 QRRSPQLQPSTLTVAGFTLDTANNVLQVNSDGSTPLV----IPLTTKEFQLLMYLMQNPN 173 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L+D +EP ++ + LR+KL+N G IETV G GY Sbjct: 174 RIIPGSKLRQQLWDMDEEPISNVVAAQMRLLRRKLAN-YGCPCPIETVPGAGY 225 >gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032] gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032] gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 235 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E L+ E + V+ G + +E+ + + D I+LD+ L + G E Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVEEIKPDIILLDIMLPNKDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQIA 122 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 123 TPQTEEESESNDIEIGSLVIYPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++I T G GY LR +D Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQD 235 >gi|24375094|ref|NP_719137.1| transcriptional regulatory protein RstA, putative [Shewanella oneidensis MR-1] gi|113971341|ref|YP_735134.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114048578|ref|YP_739128.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|24349856|gb|AAN56581.1|AE015796_3 transcriptional regulatory protein RstA, putative [Shewanella oneidensis MR-1] gi|113886025|gb|ABI40077.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113890020|gb|ABI44071.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 237 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 12/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD LA+ I LKS +V V G+ + Y+ D I+LD+ L I G Sbjct: 9 RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGIDGLS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + L + P+ ++S + S ED+++GL+ GADDY+ KP + LVARI ++RR Sbjct: 69 LCEKLP-DYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQNQ 127 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 Q+ + G LS++ + + + LT E++++ LL+ + L++ ++ Sbjct: 128 PPQAESHCLTFGKLSIDPHTHAIRLDNKEVDLTSHEFELLWLLASQAGQVLSRQYIYQLL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LN +DG+D + IDV I +LRKKL++ I+TVWG+GY+ A Sbjct: 188 LNIDFDGKD----RKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLFAPEA 234 >gi|325660821|ref|ZP_08149449.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472895|gb|EGC76105.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium 4_1_37FAA] Length = 233 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD ++ + I LK+ + G+ I Y D ++LDLGL D+ G E+ Sbjct: 6 ILVVEDDTSVRNLITTTLKAHGYRYQTAANGQTAILEASSYNPDIVLLDLGLPDMDGVEI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R +R + + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IRKIR-SWSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQRRLAIM 124 Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +G Q S G L ++ A + G +HLT EY+++ LLS LT Sbjct: 125 QGGTQEEKSTFTNGKLMLDYGAGCAYMDGKELHLTPIEYKLLCLLSKHVGKVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +V + V++ LRKK+ + YI+T G GY Sbjct: 185 EIWGRSWENDVASLRVYMATLRKKIESEPDMPQYIQTHIGVGY 227 >gi|304436456|ref|ZP_07396430.1| two component response regulator IrlR [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370502|gb|EFM24153.1| two component response regulator IrlR [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 225 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL EDD L I+ ML+ + +V +VTD G D + E+D +ILD + G Sbjct: 1 MRVLLAEDDLRLGKLIQYMLEQNDISVEWVTD-GSDIYAYATYTEYDILILDWMMPGESG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + LR + +L+ S+ED+V+GL +GADDY+ KPF EL+AR+RA+ RRS Sbjct: 60 VDACARLRRNGYDRAILMLTARDSVEDRVKGLDAGADDYLVKPFEFSELLARLRALGRRS 119 Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q + G +N A +E G I L+ +E+Q+ +LL+ + +++ L+ + Sbjct: 120 TQRIQHEVDEIGGFKLNRTANILEKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ID ++ LRKKL +AAG I+T+ G GY L Sbjct: 180 WGLEADVSSNNIDSYMKMLRKKL-DAAGEGASIKTIRGVGYKL 221 >gi|229100480|ref|ZP_04231337.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|228682935|gb|EEL36956.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 231 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + I L +K FNV TD GE +EL + + D +ILD+ L I GF V Sbjct: 4 ILVLEDDITIRSFITLNMKRAGFNVLETDTGEKALELLEQHNVDIVILDVMLPGIDGFRV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +++R + IL+ + +D+V GL GADDYI KPF+ ELVAR+++++RR + + Sbjct: 64 CKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRRIQKN 123 Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + LI +G +NL + I LT E+ ++ L +++ LN ++ Sbjct: 124 KKDLELIHSGPFQLNLLLGELYRNEIVIDLTPTEHIILRYLMENSMKPISRNELLNKIWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 K+IDV I +LR+K+ + ++ TV G+GY EN Sbjct: 184 INCVGNTKVIDVNINRLRQKIETSPSNPEFLLTVRGKGYRWNEN 227 >gi|160894157|ref|ZP_02074935.1| hypothetical protein CLOL250_01711 [Clostridium sp. L2-50] gi|156864190|gb|EDO57621.1| hypothetical protein CLOL250_01711 [Clostridium sp. L2-50] Length = 233 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD ++ + I LK+ ++ V G I + + I+LDLGL D+ G +V Sbjct: 6 ILVVEDDPSVRNLITTTLKTNDYRYVVAPNGSAAIMEATSHNPEIILLDLGLPDMDGIQV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 ++ +R + + P+ ++S S DK++ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IQTVR-SWSNVPIIVISARSEDNDKIKALDAGADDYLTKPFSVEELLARLRVTQRRLSLM 124 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A S+ V G L V+ + + +HLT EY+++ LLS LT Sbjct: 125 TAEMFTASSVFVNGKLKVDYAGGCAYLDENELHLTPIEYKLLCLLSKNVGKVLTHTFITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + +V + VF+ LRKKL YI+T G GY Sbjct: 185 NIWGRSWDNDVASLRVFMATLRKKLEPTEESPQYIQTHIGVGY 227 >gi|260431669|ref|ZP_05785640.1| transcriptional regulatory protein TctD [Silicibacter lacuscaerulensis ITI-1157] gi|260415497|gb|EEX08756.1| transcriptional regulatory protein TctD [Silicibacter lacuscaerulensis ITI-1157] Length = 222 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI +IED++ LA++I L+ V G G + D ++LD+ L G Sbjct: 1 MRIAIIEDNEPLANAIAYRLRDRGHAADVLQDGSGGDAFLRQEGADLVVLDINLPGTDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLRA+R TPV +L+ S + D+V+GL SGADDY+ KPF +EL ARIRA+ RR Sbjct: 61 EVLRAMRARGDGTPVILLTARSELSDRVKGLDSGADDYLVKPFEMDELEARIRALSRRKN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G L+ + + V +G + + +E ++E L R ++K +H+Y Sbjct: 121 LDFGAVQTIGALAFDRATRQVLAEGAPLDIPRRETAVLECLLDRAGRIVSKAQLTDHVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + I+ + +LRK+L AA G I+T G GY+L A Sbjct: 181 VGADVDDTAIEPHVSRLRKRL--AAHGV-VIKTARGLGYMLETTA 222 >gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656] gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656] Length = 232 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 127/236 (53%), Gaps = 20/236 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60 ++L+IEDD+ + +++ ++L+++ + + GE+G++ KF FD +I+D+ + +I G Sbjct: 3 KLLIIEDDETIRNALRILLENQGYFIEEAHDGEEGLQ--KFDSTFDLLIIDIMMPNISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R K P+ L+ S DK+ L +G DDY+ KPF+ EL+ARI+A++RR R Sbjct: 61 EVCRRIR-EKSYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCR 119 Query: 121 GH---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + A S I L++ V G ++ LT KEYQ++ LL T + Sbjct: 120 VYDNADASDTTASSTIERCGLTLYTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFST 179 Query: 172 EMFLNHLYDGRDEPEVKI----IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ +EP + I V I LR KL G + I+TVWG+GY E Sbjct: 180 QNIFESVW---NEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFEE 232 >gi|170694291|ref|ZP_02885445.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170140714|gb|EDT08888.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 228 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LLIEDD+ +A I+ L+ F V D+ DGI + + +ILDLGL I Sbjct: 1 MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L R + TPV IL+ + D+V+GL SGADDY+ KPF EL ARIRA++R Sbjct: 58 DGMTLLARFRQSNRHTPVIILTARDELNDRVQGLNSGADDYMLKPFEPTELEARIRAVMR 117 Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RS H + + G + ++ + + + L+ +E+ ++E+L LR ++K Sbjct: 118 RSGPHGDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +HL + I+V++ ++RKKL + + I TV G GY+L+E Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLESC---RVEIVTVRGFGYLLQE 223 >gi|332284606|ref|YP_004416517.1| two-component response regulatory protein [Pusillimonas sp. T7-7] gi|330428559|gb|AEC19893.1| two-component response regulatory protein [Pusillimonas sp. T7-7] Length = 229 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+ EDD LA + L+ E + V V + G K FD +ILDL L + G Sbjct: 1 MRILIAEDDSILADGLSRSLRYEGYAVDVVNDGSSADSALKLQSFDLLILDLDLPQLHGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + PV IL+ S+E +V+GL GADDY++KPF EL AR+RA+ RRS Sbjct: 61 AVLRLLRQRQTPLPVLILTAADSVEQRVKGLDLGADDYMAKPFALTELEARVRALTRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +++ LS +L+ + + + L+ +E ++E+ R ++K ++ L Sbjct: 121 GIGATVLRYKQLSFDLNGRIAHISDQPLELSARETSLLEIFLSRCGRMISKNQLVDLLCQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKD 227 +E I+V+I +LRKK+ +G + I TV G GY L EN D Sbjct: 181 WGEEVTPNAIEVYIHRLRKKI-EPSGAR--IVTVRGLGYCLEPENRSD 225 >gi|255281522|ref|ZP_05346077.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM 14469] gi|255268010|gb|EET61215.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM 14469] Length = 225 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD+A+ ++ LK E F V +E + EF ++LD+ L G+ Sbjct: 6 VLLVEDDQAIVENLTGFLKEEGFCVTAVSGQAAAMEALEAREFALVLLDVTLAQGNGYST 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 A++ ++ PV L+ + V GL GADDYISKPF ELV+R+R ++RRS G Sbjct: 66 CTAIK-SRGDIPVIFLTALGDEFSVVTGLDMGADDYISKPFRPRELVSRMRTVLRRS-GR 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 +Q ++ G+LSV++ TVE +G I+L+ EY+++ + + LT+ + L ++D Sbjct: 124 SQRVMKIGNLSVDMVKGTVEKEGREIYLSAMEYRLLLIFLNHRGMVLTRSVLLEEIWDAA 183 Query: 183 DE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + V+I +LR+K+ + + TV G GY L Sbjct: 184 GEFVNDNTLTVYIKRLREKIEDDPANPQILLTVRGVGYRL 223 >gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] Length = 240 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 129/238 (54%), Gaps = 15/238 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDIPG 59 ILL++D++ + ++ LK E Y TDL EDG ++L + +D I+LD+ L + G Sbjct: 5 ILLVDDEEHILRLLDYHLKKEG---YETDLAEDGRTALKLAESEHYDFILLDIMLPQLDG 61 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 EV + +R TP+ ++S DKV L+ GADDY++KPF+ EL+AR++AI+RR Sbjct: 62 IEVCKRIRSKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAILRRT 121 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + G + L + + V ++LT KE++++ L N TLT+ Sbjct: 122 EKTEEEDTTGLPEEYWTINHLVIYPERHEVYKNQKLLNLTPKEFELLLYLVKHPNMTLTR 181 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 E L ++ E +++DV I KLR+K+ + +I+T+ G GY +E KDET Sbjct: 182 ERLLERIWGYDFGQETRLVDVHIGKLREKIEDDPKKPVFIKTIRGYGYKFKE-LKDET 238 >gi|167751398|ref|ZP_02423525.1| hypothetical protein EUBSIR_02389 [Eubacterium siraeum DSM 15702] gi|167655644|gb|EDR99773.1| hypothetical protein EUBSIR_02389 [Eubacterium siraeum DSM 15702] Length = 227 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L ED+ ++A ++ +L N+ V G D ++ + ++D IILD+ + G Sbjct: 1 MKLLFAEDEVSMAEAVTDILTYHNYTVDTVYDGADALDYARAEQYDGIILDIMMPKKSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR +TP+ +L+ + +ED++ GL GADDY+ KPF EL++R+RA++RR Sbjct: 61 EVLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRRKD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 ++ G++S+N + E++G I L EY+++ELL L K L+ E L + Sbjct: 121 RFTPDIMTFGNVSLN--PSSCELKGPLQSIVLPKIEYKLMELLMLNKGIYLSTEDILVKV 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E + V+I +RK+L+ A G I GY L Sbjct: 179 WGYESDAESGAVWVYISYVRKRLA-AIGADIEIRAKRSVGYTL 220 >gi|157148587|ref|YP_001455906.1| DNA-binding transcriptional regulator QseB [Citrobacter koseri ATCC BAA-895] gi|157085792|gb|ABV15470.1| hypothetical protein CKO_04414 [Citrobacter koseri ATCC BAA-895] Length = 219 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLVEDDALIGDGIKAGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV IL+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREQGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALLRRAN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G +++N + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQVSNELRHGQVTLNPGNLVATLAGDPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ I+V + LR+KL G ++I TV G GY L Sbjct: 181 WDEDVSSNTIEVHVHHLRRKL-----GSDFIRTVHGIGYTL 216 >gi|159898783|ref|YP_001545030.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891822|gb|ABX04902.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 231 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL ED+ L I L+ F V G + + L + IILDL + + GF Sbjct: 6 VRVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLMMPRLTGF 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R I P+ +L+ + + DKV GADDY+ KPF +EL+ARIRA++RRS+ Sbjct: 66 EVCQRIREQSI-VPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRRSQ 124 Query: 121 GHAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q G+L ++L+A +V G + LT E+ ++ L N LT M L Sbjct: 125 WSVQPQASGTKRYGELEIDLEAHSVRRAGLDVRLTPTEFALLAYLITHPNKVLTHRMLLQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 H++ + E + + V+I +LR+KL ++ T G GY Sbjct: 185 HVWGDQYRDEAEYLRVYIGRLRRKLEADPSNPRHLLTEAGIGY 227 >gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 243 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 125/241 (51%), Gaps = 10/241 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+ LA + L E F V D G G E +D I+LDL L + G + Sbjct: 4 RLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESYDLILLDLMLPGMNGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR ++TP+ IL+ + + V+GL+SGADDYI+KPF EL+AR+ A++RR+ G Sbjct: 64 ILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTSG 123 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + S I G+L + + V + G I L KE++++ LS + LT++ Sbjct: 124 GDEGVLSEQKDGSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 +N ++ + +DV + LRKKL +I+++ G GY L N K Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDP-DSVHIDSIRGVGYKLVVNKKRSASHL 242 Query: 233 L 233 L Sbjct: 243 L 243 >gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] Length = 235 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 Q L + GDL + DA + G + LT +E++++ L+ +T Sbjct: 122 VSVDNQESDEKKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|238917425|ref|YP_002930942.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238872785|gb|ACR72495.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 227 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + + +K+E + VY G+D +++ D ILD+ + D+ G + Sbjct: 4 VLVVDDEEDIRELVGIYIKNEGYQVYKAANGKDALDIIDNMSIDITILDVMMADMDGITL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 +R K + P+ +LS DKV GL +GADDY++KPFN EL+AR++A +RR + Sbjct: 64 CMEIR-KKSNIPIIMLSAKDQDMDKVIGLSAGADDYLAKPFNPVELIARVKAQLRRYKDF 122 Query: 121 -GHAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 QS I+ DL++N+D V + I LT KE+ ++ELL K + E + L Sbjct: 123 NNQKQSNILEYLDLTMNIDTHRVFLSSKEILLTPKEFAILELLWKNKGNVFSTEHIYDML 182 Query: 179 YDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++ +I V I +R K+ YI+TVWG GY Sbjct: 183 WSEEEAYDINNVIMVHIRNIRSKIETDLKNPKYIKTVWGVGY 224 >gi|160935360|ref|ZP_02082742.1| hypothetical protein CLOBOL_00255 [Clostridium bolteae ATCC BAA-613] gi|158441718|gb|EDP19418.1| hypothetical protein CLOBOL_00255 [Clostridium bolteae ATCC BAA-613] Length = 231 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 113/202 (55%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+K LA ++ M+ + V+ G +G+EL + +DAI+LD+ L + G+ Sbjct: 8 MRILVIEDEKRLAFTLADMIGGAGYYTDVSHDGAEGLELAQTGIYDAIVLDVMLPGMDGY 67 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR + TPV +L+ S + D+VRGL +GAD Y++KPF EE +A +R ++RR Sbjct: 68 AVLKNLRSTRNMTPVLMLTARSELSDRVRGLDAGADYYLTKPFATEEFLACLRTVLRRHG 127 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + GDL + + + + L+ KE +++ LL + L KE L ++ Sbjct: 128 DIAPDTLTFGDLILTPSMPELICGENSVSLSAKELELMSLLIQNSSQYLPKETLLLKVWG 187 Query: 181 GRDEPEVKIIDVFICKLRKKLS 202 ++ +I LRKKLS Sbjct: 188 YDANVNSNSVEAYISFLRKKLS 209 >gi|150392407|ref|YP_001322456.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149952269|gb|ABR50797.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 218 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 126/219 (57%), Gaps = 8/219 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++++ I + L+ G + +E K + IILD+ L ++ GF + Sbjct: 4 ILIVEDEQSINDLIAMNLELVGHTSTQVYEGNEALEFIKQNTYSLIILDIMLPELDGFSL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + + + PV L+ M ++ D+V+GL+ GADDYI KPF EL+ARI A++RR++ Sbjct: 64 MEYV---PENIPVIFLTAMGNLSDRVKGLKLGADDYIVKPFETIELLARIEAVLRRTQ-R 119 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + ++ VNL+++ V V G I LT +EY+++E+L +N L++E L ++ Sbjct: 120 SLNIFSLDSTVVNLESRVVTVNGDEIELTLREYELLEILIKNRNIALSREKLLKLAWEYD 179 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I KLRKKL+ +N I+TV+ GY L Sbjct: 180 YFGETRTVDVHIQKLRKKLN----WENKIKTVYKMGYRL 214 >gi|15923060|ref|NP_370594.1| transcription regulator protein kdpE [Staphylococcus aureus subsp. aureus Mu50] gi|15925773|ref|NP_373306.1| hypothetical protein SA0066 [Staphylococcus aureus subsp. aureus N315] gi|49482312|ref|YP_039536.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|57865946|ref|YP_190033.1| DNA-binding response regulator KdeP [Staphylococcus epidermidis RP62A] gi|148266502|ref|YP_001245445.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392536|ref|YP_001315211.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156978400|ref|YP_001440659.1| hypothetical protein SAHV_0069 [Staphylococcus aureus subsp. aureus Mu3] gi|254663999|ref|ZP_05143471.1| hypothetical protein SauraM_00335 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794422|ref|ZP_05643401.1| response regulator receiver [Staphylococcus aureus A9781] gi|258407615|ref|ZP_05680751.1| two-component system response regulator receiver [Staphylococcus aureus A9763] gi|258419892|ref|ZP_05682854.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|258445150|ref|ZP_05693387.1| response regulator receiver [Staphylococcus aureus A6300] gi|258447754|ref|ZP_05695893.1| response regulator receiver [Staphylococcus aureus A6224] gi|258452216|ref|ZP_05700230.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|258455622|ref|ZP_05703577.1| transcription regulator protein kdpE [Staphylococcus aureus A5937] gi|282928323|ref|ZP_06335926.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus A10102] gi|295405345|ref|ZP_06815155.1| two-component system [Staphylococcus aureus A8819] gi|295426618|ref|ZP_06819257.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297244682|ref|ZP_06928562.1| two-component system [Staphylococcus aureus A8796] gi|5360818|dbj|BAA82188.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus] gi|13699985|dbj|BAB41284.1| kdpE(SCCmec) [Staphylococcus aureus subsp. aureus N315] gi|14245837|dbj|BAB56232.1| transcription regulator protein kdpE [Staphylococcus aureus subsp. aureus Mu50] gi|49240441|emb|CAG39095.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|57636604|gb|AAW53392.1| DNA-binding response regulator KdeP [Staphylococcus epidermidis RP62A] gi|147739571|gb|ABQ47869.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149944988|gb|ABR50924.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156720535|dbj|BAF76952.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788394|gb|EEV26734.1| response regulator receiver [Staphylococcus aureus A9781] gi|257840840|gb|EEV65297.1| two-component system response regulator receiver [Staphylococcus aureus A9763] gi|257844174|gb|EEV68561.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|257856058|gb|EEV78977.1| response regulator receiver [Staphylococcus aureus A6300] gi|257859036|gb|EEV81900.1| response regulator receiver [Staphylococcus aureus A6224] gi|257860053|gb|EEV82887.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|257861834|gb|EEV84607.1| transcription regulator protein kdpE [Staphylococcus aureus A5937] gi|282589907|gb|EFB94990.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus A10102] gi|285815795|gb|ADC36282.1| DNA-binding response regulator KdpE [Staphylococcus aureus 04-02981] gi|294969420|gb|EFG45439.1| two-component system [Staphylococcus aureus A8819] gi|295129070|gb|EFG58697.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297178199|gb|EFH37446.1| two-component system [Staphylococcus aureus A8796] gi|315129045|gb|EFT85041.1| hypothetical protein CGSSa03_13532 [Staphylococcus aureus subsp. aureus CGS03] Length = 231 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 113/202 (55%), Gaps = 3/202 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+A+ H I++ L + V G++ + + D I+LDLGL DI G + Sbjct: 5 LLVVEDDEAILHLIDVALTMNYYKVVTAKTGKEADFRLRTEQPDIILLDLGLPDIDGLSL 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ R + TP+ ++S + + V L GA+DY++KPFN +EL ARIR +R SR Sbjct: 65 IQQFR-DFVDTPIIVISARTEEQTIVEVLDRGANDYMTKPFNIDELRARIRVALRMSRST 123 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 QS G L+++ DAK+V V +HLT E+Q++ +L LT ++ L LY Sbjct: 124 ETIQSRFTNGPLTIDFDAKSVLVNEQSVHLTPNEFQLLTILCHHVGKVLTYQVLLKSLYG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLS 202 + E+ + V + LRKKL+ Sbjct: 184 YVNHTEMAALRVHMASLRKKLN 205 >gi|329667608|gb|AEB93556.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 236 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 127/233 (54%), Gaps = 19/233 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 ++IL++EDD ++A +++ E ++V D+ +DG+E + ++ +D + LDL L Sbjct: 2 LKILMVEDDNSVAEMMKMFFSKEQWDV---DIAKDGVEAVEMFKADPSSYDIVTLDLNLP 58 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 G EV + +R IS P+ +L+ S D++ GL GAD+Y++KPF+ L+ARI+A+ Sbjct: 59 KKDGIEVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKAL 118 Query: 116 VRRSR----GHAQSLI----VTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166 RRS HA + I VT L ++ D + V + LT KE+ ++ ++ + Sbjct: 119 YRRSHLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPK 178 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ L ++ E + +D I KLR+KL A G ++TVWG GY Sbjct: 179 QVFSRDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGY 229 >gi|170690183|ref|ZP_02881350.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170144618|gb|EDT12779.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 231 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ L+ S+ L + V GE + + ++ +ILD+GL + G Sbjct: 9 MRVLLVEDNPILSRSLTDALTNAKLTVDCMHDGESADHVLRTQDYALVILDIGLPKLDGL 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV IL+ S+E++VRGL GADDY++KPF EL AR RA++RR Sbjct: 69 EVLRRLRARRNAVPVLILTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGH 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S+ G L + + + G + LT +E ++E+L LR + KE ++ Sbjct: 129 GQEASVAQCGTLVYDSVDRGFTLDGEPLALTPRERSVLEVLILRNGRAINKETLSEKIFG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL ++ G I T+ G GY+L Sbjct: 189 LDESVNADAIEIYVYRLRKKLERSSVG---IVTLRGLGYLL 226 >gi|118478544|ref|YP_895695.1| vancomycin response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417769|gb|ABK86188.1| vancomycin response regulator [Bacillus thuringiensis str. Al Hakam] Length = 234 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D+ G Sbjct: 7 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVSGLT 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 67 ICQKIR-EKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 125 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 126 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 185 Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ D I V I LR+K+++ YI+TVWG GY Sbjct: 186 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGY 230 >gi|116629893|ref|YP_815065.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|238853664|ref|ZP_04644032.1| transcriptional regulatory protein ResD [Lactobacillus gasseri 202-4] gi|282851588|ref|ZP_06260953.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311110472|ref|ZP_07711869.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22] gi|116095475|gb|ABJ60627.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|238833702|gb|EEQ25971.1| transcriptional regulatory protein ResD [Lactobacillus gasseri 202-4] gi|282557556|gb|EFB63153.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311065626|gb|EFQ45966.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22] Length = 236 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 128/233 (54%), Gaps = 19/233 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 ++IL++EDD ++A +++ E + V D+ +DGIE + ++ +D + LDL L Sbjct: 2 LKILMVEDDNSVAEMMKMFFSKEQWEV---DIAKDGIEAVEMFKAHPDSYDIVTLDLNLP 58 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 G EV + +R +S P+ +L+ S D++ GL GAD+Y++KPF+ L+ARI+A+ Sbjct: 59 RKDGMEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKAL 118 Query: 116 VRRSR----GHAQS----LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166 RRSR HA + ++T L ++ D + V + + LT KE+ ++ ++ + Sbjct: 119 YRRSRIEKDMHASNGVKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPK 178 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ L ++ E + +D I KLR+KL A G ++TVWG GY Sbjct: 179 QVFSRDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGY 229 >gi|71066151|ref|YP_264878.1| two component heavy metal response transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039136|gb|AAZ19444.1| two component heavy metal response transcriptional regulator, winged helix family [Psychrobacter arcticus 273-4] Length = 238 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+ED++ L I+ L F V G DG EF +++D+ L D+ GF Sbjct: 1 MKVLLVEDEQKLGEYIKKGLTETGFIVDHHMTGLDGYHALMTEEFSVVLMDVMLPDVSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ R A TPV L+ + D+++G++ G DDY++KPF EL+ RI+ ++RR+ Sbjct: 61 ELVQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKNLLRRAN 120 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++I DL +++ +TV I LT KE+ +++L R+ L + + + + Sbjct: 121 QSDYKSTVIHIADLKMDIAKRTVYRGETPIKLTAKEFTLLQLFLERQGEVLPRTVIASQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D + + IIDV I +LR K+ + K I TV G GY L ++ Sbjct: 181 WDINFDSDTNIIDVAIRRLRIKIDDGFDIK-LIHTVRGMGYRLENSS 226 >gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB [Sphingomonas sp. S17] gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB [Sphingomonas sp. S17] Length = 230 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++LL+EDD ALA + K E+F V T GE+ + L + D ++LD + I G Sbjct: 4 VKMLLVEDDAALAELLVFHFKREDFEVVHTPDGEEALLLARENTPDIVLLDWMVEGISGI 63 Query: 61 EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV R LR A + P+ +L+ ED+VRGL++GADDY++KPF+ ELVAR+ A++RR Sbjct: 64 EVCRRLRRAPETANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRR 123 Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R A +V D+ ++ V G + L E+++++ ++E L+ Sbjct: 124 VRPALAGEALVYADIEMDTVGHKVRRAGEVVSLGPTEFRLLKHFLEHPGWVFSRERLLDA 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + E + +DV I +LRK + N + I TV GY L Sbjct: 184 VWGHDSDIESRTVDVHIRRLRKAI-NIGDRPDIIRTVRSAGYSL 226 >gi|328725269|ref|XP_003248407.1| PREDICTED: transcriptional activator protein CopR-like, partial [Acyrthosiphon pisum] Length = 214 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 119/214 (55%), Gaps = 6/214 (2%) Query: 21 KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80 + +F V V G DG+ L +++D ILD+ L I G+++L R A +TPV L+ Sbjct: 1 RENDFVVDVAANGIDGLHLLLTHDYDLAILDVMLPGINGWKLLEMARQADRATPVMFLTA 60 Query: 81 MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA-----QSLIVTGDLSVN 135 +ED+V+GL+ GA+DY+ KPF+ EL+AR R I+RR A +S + G L ++ Sbjct: 61 RDDVEDRVKGLELGAEDYLIKPFSFSELLARARVILRRQTPSAVLSNDESQLQVGGLVLD 120 Query: 136 LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFIC 195 V +G+RI LT KE+ ++ LL R L++ + ++D +PE +IDV I Sbjct: 121 FVKHKVTREGNRIELTQKEFLLLSLLMRRSGEVLSRTVIAEQVWDMNFDPETNVIDVAIR 180 Query: 196 KLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 +LR K+ + K + T+ G GYVL E +T Sbjct: 181 RLRGKIDDNYAVK-LLHTIRGAGYVLEEKEHADT 213 >gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 238 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 15/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED++AL ++E LK + + V V G ++L + ++ + I+LD+ L + GFE Sbjct: 4 KILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLAREFQPEIILLDVMLPGMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R LR +++TPV +L+ + D+V GL+ GADDY++KPF+ EL+AR++A++RR R Sbjct: 64 LCRRLR-QEMNTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRRVRM 122 Query: 121 -------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 ++ +++G+L +NL + V + G + + KE++++ L + Sbjct: 123 IREEMQKSEESTQKESEKRLLSGNLELNLARREVRLNGVVVAVKPKEFELLHFLMKHRGQ 182 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+++ L L+ + + +DV I LR+K+ I TV G GY Sbjct: 183 VLSRDYLLKELWGWDYFGDSRTVDVHIRWLREKIEPDPAHPVRIVTVRGAGY 234 >gi|293607374|ref|ZP_06689713.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC 43553] gi|292814218|gb|EFF73360.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC 43553] Length = 222 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 120/220 (54%), Gaps = 7/220 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRILL+EDD L ++ L ++ V +V L + + L + F A++LDLGL + G Sbjct: 1 MRILLVEDDPMLGDALRAGLSNDGATVHWVRALSDAQLALVD-HGFHAVLLDLGLPEGSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L+ALR +TPV I++ + ++++GL +GADDY+ KPF +EL+AR+RA++RRS Sbjct: 60 LTLLKALRGRFDTTPVLIITARDRLSERIQGLDAGADDYLVKPFQLDELLARLRAVLRRS 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S + D+ + ++ V G + L+ EY + L R T++++ +Y Sbjct: 120 SNSVVSALRCRDVVLEPASRLVRQDGREVSLSAHEYHTLLALMQRMGHTVSRDQLEVAVY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + V+I +LR+KL G IET G GY Sbjct: 180 GSSGTIESNTVAVYIHQLRRKL-----GDGLIETQHGLGY 214 >gi|168177980|ref|ZP_02612644.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226947863|ref|YP_002802954.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182671519|gb|EDT83493.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226844534|gb|ACO87200.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 230 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ L +E +NV+ GE+ +E+ + E + ++LD+ + D+ G EV Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R K S P+ +LS D++ G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CKRAR-EKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFL 123 Query: 123 AQSLIVTGDL----SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ ++ S+ +D K V + + I LT +E++++ LL+ + + E Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V + +LR K+ G I TVWG GY Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGY 226 >gi|119489672|ref|ZP_01622431.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119454409|gb|EAW35558.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 226 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+ L + L E + V V D G G L + +D +ILD L G Sbjct: 1 MRILLVDDEVELTLPLSRALTREGYAVDVADEGATGYNLATQHHYDLLILDWMLPHQSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E+ + LR+ P+ L+ ++ D+V GL +GADDY+ KPF EL+AR+RA++RR Sbjct: 61 EMCQQLRLKNNQIPILFLTAKDTLNDRVEGLDAGADDYLVKPFELRELLARVRALLRRPP 120 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A S + +L ++++ + G I L+ KE Q++E LT + Sbjct: 121 TLESPAANSRLQIFNLELDIENQLAYRNGRIIELSEKECQLLEYFMRHSGQLLTHQQIYQ 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 HL+ D+P ++ I LR+K+ + + I TV+ +GY Sbjct: 181 HLWADSDQPSSNVLAAQIRLLRRKIEDPK-ERQLIHTVYRKGY 222 >gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2] gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2] Length = 238 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 129/231 (55%), Gaps = 9/231 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ + V G++G +L + D I+LDL L + G E Sbjct: 4 KILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEKPDLIVLDLMLPKLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR KI+TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKQLRQQKIATPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQF 123 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ + G L + + + LT KE++++ L+ K+ LT++ Sbjct: 124 VPEAAEEKTEDGDSLRIGGLKIFPQHYEAYFEDELLELTPKEFELLLYLAKNKSRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ +++ + +I+DV I LR+K+ YI+T+ G GY L E Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLREKIETNTKKPVYIKTIRGLGYKLEE 234 >gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321] gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321] Length = 235 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 13/234 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E + + D IILDL L +I G E Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQYEAEQPDIIILDLMLPEIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R S P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 63 VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 Q L + GDL + DA + G + LT +E++++ L+ +T Sbjct: 122 VSVDNQESDEKKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +E L ++ +V+ +DV I +LR+K+ + YI T G GY +R N Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|222148026|ref|YP_002548983.1| two component response regulator [Agrobacterium vitis S4] gi|221735014|gb|ACM35977.1| two component response regulator [Agrobacterium vitis S4] Length = 252 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 127/227 (55%), Gaps = 4/227 (1%) Query: 1 MRILLIEDD-KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+IL+IEDD +A A+ + ++ + +D GE G+ + +D +I+D L G Sbjct: 28 MKILVIEDDLEAAAYMTKAFREAGIMADHASD-GEAGLFMGCENTYDVMIIDRMLPRRDG 86 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V+ LR I+TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ + RR Sbjct: 87 LSVISELRKRSINTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRK 146 Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +I GDL ++ + V G I L +E++++E L +T+ M L H+ Sbjct: 147 GTPEQDMIYRVGDLELDRLSHEVRRAGKEILLQPREFRLLEYLMKNAGQVVTRTMLLEHV 206 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +D +P+ +IDV + +LR K+ + ++TV G GY++++ + Sbjct: 207 WDYHFDPQTNVIDVHVSRLRSKIEKDF-DRPLLKTVRGAGYMIKDES 252 >gi|215482948|ref|YP_002325153.1| Transcriptional activator protein irlR [Acinetobacter baumannii AB307-0294] gi|301510477|ref|ZP_07235714.1| putative two component heavy metal response transcriptional regulator [Acinetobacter baumannii AB058] gi|213989068|gb|ACJ59367.1| Transcriptional activator protein irlR [Acinetobacter baumannii AB307-0294] Length = 223 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ LR +KI PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR Sbjct: 61 SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL ++L V G+ I L+ E+ ++ L + K +T+ + ++ Sbjct: 119 QYLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + IDV + +LR K+ K I T+ G GY Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEGYEPK-LIHTIRGLGY 217 >gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1] gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1] Length = 228 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 124/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + LK+E + G++ + +L E +ILD+ + + G Sbjct: 1 MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ ++S +S DK++GL +GADDY+ KPFN E++AR+R+++RRS Sbjct: 61 IEVIKEVR-KDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L +N D+ V+ + G I LT E+ ++ +L+ N + + Sbjct: 120 QKEVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYILASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGY 224 >gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] Length = 232 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +D+ +A IE+ LK E ++V GE+ + + K D ++LD+ + + G+ Sbjct: 4 ISILIADDEAEIADLIEIHLKKEGYHVVKAADGEEAVHIIKTQPIDLVVLDIMMPKMDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R AK P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 64 EVTRQIR-AKYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++S + G + ++ + +TV V G +I LT KE+ ++ LL+ E Sbjct: 123 TLNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I LRKKL I+TVWG GY Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|39934999|ref|NP_947275.1| two-component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192290532|ref|YP_001991137.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39648850|emb|CAE27371.1| two-component transcriptional regulator, winged helix family [Rhodopseudomonas palustris CGA009] gi|192284281|gb|ACF00662.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 241 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 129/230 (56%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L+IEDD+ S + ++K+ ++ DL GE+G+ + + ++D +++D L Sbjct: 16 MRLLIIEDDR---ESADYLVKAFREVGHIADLASDGEEGLAMAESGDYDVLVVDRMLPKR 72 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G V+ +LR TPV ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + R Sbjct: 73 DGLSVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSR 132 Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R G A ++ DL ++ + V G + L +E++++E L +T+ M L Sbjct: 133 RHGGPAEETSYRVADLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLE 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++D +P+ +IDV I +LR K+ + T+ G GY++R+ + Sbjct: 193 NVWDYHFDPQTNVIDVHISRLRSKIDKGF-DHPLLHTIRGAGYMIRDGLR 241 >gi|221199407|ref|ZP_03572451.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD2M] gi|221205690|ref|ZP_03578705.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD2] gi|221174528|gb|EEE06960.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD2] gi|221180692|gb|EEE13095.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD2M] Length = 225 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ ++ + F V + G G+ L + +D I+LD+ L + G+ Sbjct: 1 MRILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQKESYDVIVLDVMLPVLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR +TPV L+ + D+ GL+ GADDY+ KPF EL+AR+R + RR Sbjct: 61 SVLKRLRDTH-ATPVMFLTARGDVHDRAHGLELGADDYLVKPFAFVELLARVRTLARRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ + V+ RI LT +E+ +++LL+ R L++ ++++D Sbjct: 120 PRETERLAVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +++V I +LR K+ +A K I TV G GY L Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDAFPLK-LIHTVRGVGYAL 219 >gi|118587757|ref|ZP_01545167.1| two component transcriptional regulator, winged helix family protein [Stappia aggregata IAM 12614] gi|118439379|gb|EAV46010.1| two component transcriptional regulator, winged helix family protein [Stappia aggregata IAM 12614] Length = 228 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+IEDD A + L G G+++ ++D +I+D L + G Sbjct: 2 LRILVIEDDPEAASYLVKGLSELGHTADQAADGPAGLDMALDRDYDILIVDRMLPKMDGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V++ LR TPV ILS + ++D+V+GL++G DDY+ KP+ EL+ARI A+ RR + Sbjct: 62 SVIQELRRQGNHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELLARIEALARRPK 121 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +Q + GDL+++ A + I L +E++++E L +T+ M L ++ Sbjct: 122 SASQIETTYTVGDLTLDRMAHSCRRGETEIPLQPREFRLLEYLMQNAGQVVTRTMLLENV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ +P+ +IDV I +LR K+ + T+ G GY +R+ A Sbjct: 182 WEYHFDPQTNVIDVHISRLRGKIDKGF-DTPLLHTIRGAGYTIRDAA 227 >gi|325840792|ref|ZP_08167156.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1] gi|325490162|gb|EGC92499.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1] Length = 228 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 11/225 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIED+ + +++ L+ E + V+V G +G+ + + + D +ILDL L D+ G Sbjct: 1 MNILLIEDEVLVLDALKAYLEREQYRVFVATTGNEGLTIFEKEKIDLVILDLMLPDMKGE 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + +R A + +L+ S+E ++ GL GADDY+ KPF+ ELVARI+ +VRR Sbjct: 61 EICQQIR-AISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRIN 119 Query: 121 GHAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G Q++ + D L ++ + V+VQ + T E+ ++ LL K LT+E +N + Sbjct: 120 GPLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQI 179 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++G D + IDV I +RKK+ YI TV GY Sbjct: 180 LGFDFNGYD----RTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGY 220 >gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ + ++ L+SE + V G + + AI+LDL + + G Sbjct: 1 MRVLVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITAWRPGAIVLDLLMPFMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR TP+ +L+ ++ D++ GL +GADDY+ KPF+ +EL+AR+RA++RRS Sbjct: 61 TMCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRRSY 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ DL+V+ A V +GHR + L+ EY ++E+L + + + + ++ Sbjct: 121 PGDDTVLRCADLAVDTGAHRVR-RGHRTVELSRTEYALLEVLLRNAGQAMPRGLLVERVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 P ++V++ LR+KL A G + TV G GY L E+ Sbjct: 180 GQDFGPSSNSLEVYVRYLRRKL-EAGGEPRLVHTVRGVGYRLDES 223 >gi|92116995|ref|YP_576724.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799889|gb|ABE62264.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 230 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IEDD+ A + + + GE+G+ L ++D +++D L G Sbjct: 1 MRLLIIEDDRESADYLVKAFREVGHVAELASDGEEGLSLADGGDYDVLVIDRMLPKRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ +LR TPV ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + RR Sbjct: 61 SVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRRG 120 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+ + GDL ++ + V + L +E++++E L +T+ M L +++ Sbjct: 121 GPAEETVYRVGDLELDRLSHRVVRGEEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ +IDV I +LR K+ + + T+ G GY++R+ Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKGF-ERPLLHTIRGAGYMIRDG 224 >gi|91775660|ref|YP_545416.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91709647|gb|ABE49575.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 223 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD LA L + V + + G + + +D ++LD+GL + GF Sbjct: 1 MRILVVEDDAILAEGTCESLSKAGYAVDLAETGTKANAMMEAGHYDMLLLDIGLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR S PV I+S ++ ++ GL GADD++ KPF EL AR RA++RR Sbjct: 61 EVLRRLRKHNNSIPVLIISARDDVDFRIYGLDLGADDFMLKPFVLAELHARTRALLRRHT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + G L V+L A+ V G I L+ +E+ ++ L + KE + L D Sbjct: 121 LSERNTLACGKLMVDLGAQRASVNGEPIELSIREWDVLVYLLRNLGKVVRKEAIIETLCD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + ++V+I +LR KL +A G +I TV G GY+L Sbjct: 181 WKTDISLNAVEVYISRLRSKL-DAHG--IHIRTVRGFGYLL 218 >gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603] gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603] Length = 237 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 14/229 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57 +RIL+ +DDK + ++ L+ E +Y+ D +G E LC F + ++ +ILDL + + Sbjct: 4 IRILIADDDKEIRDLLKRYLERE---LYMVDTAVNGEEALCLFNQNNYNLVILDLMMPKV 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++R Sbjct: 61 DGIEVCRKLR-DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMR 119 Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R + ++ + L+++ TV G I+LTGKE ++++ + T Sbjct: 120 RFLVLGSNTNVQEKTTLTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFT 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +++D + + V I KLRKK+ + +I+TVWG GY Sbjct: 180 KTQLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGY 228 >gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 231 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 133/226 (58%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ LK E ++ V G + ++L + +FD I+LDL L +I G E Sbjct: 5 KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLMLPEIDGLE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R + ++ PV +++ DKV GL+ GADDYI+KPF+ EL+AR++A++RRS Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++I GD+ VN + V + LT KE+++++LL K LT+E+ L+ + Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + +DV I LRKK+ + YI+T+ G GY N Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230 >gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis HTCC2594] gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis HTCC2594] Length = 229 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD ALA +E +E + V T G++ + + D +ILD + G E Sbjct: 5 KLLLVEDDPALAELLEYRFTNEGYGVRTTSDGDEALLMASEDVPDLVILDWMIEGTSGIE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR K + P+ +L+ + +D+VRGL +GADDY+ KPF+ EL+AR+ A++RR Sbjct: 65 VCRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARVAAVMRRI 124 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A I GD+ ++ A V +G + L EY++++ ++ L+ + Sbjct: 125 RPALAGETIQAGDIVLDPVAHKVSRRGETLQLGPTEYRLLKFFMESPGRVFSRGQLLDGV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + E++ +DV I +LRK + + G + I TV GY L N Sbjct: 185 WGTGSDIELRTVDVHIRRLRKAI-DVPGADDPIRTVRSAGYALETN 229 >gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] Length = 299 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDIP 58 +IL+++D+ + EL+ + + YV + DG + L FD +ILD+ + + Sbjct: 74 KILIVDDEPRIR---ELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G LR +R I+TPV IL+ DK+ GL+ GADDY+ KPF+ ELVAR++A++ R Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190 Query: 119 SRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++ + G+L+++ + TV V G + LT KE+ ++ L+ K L++E L Sbjct: 191 TMPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKIL 250 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +++ E + +D + LR L G YI TVWG GY +A Sbjct: 251 QKVWNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPDA 297 >gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family [Leptospirillum ferrodiazotrophum] Length = 232 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 123/230 (53%), Gaps = 9/230 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD +A I LK E F G G+ L + + DAI+LDL L I G Sbjct: 4 KILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGLT 63 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R ++ A +TPV I++ D+V GL+ GADDYI KPF+ +E+VAR++A++RR Sbjct: 64 VNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRR- 122 Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R Q L + G +++++ +G LT KE+ ++ L L +E LN Sbjct: 123 RETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLLN 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++ E + +DV I +LRKK+ +A ++ETV GY RE K Sbjct: 183 TVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFREEGK 229 >gi|297560594|ref|YP_003679568.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845042|gb|ADH67062.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 254 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 2/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD + ++E+ L++ + Y+ D GE + L + D ++LDLGL+ + G EV Sbjct: 15 VLVVDDDPLIRRTLEVNLRARGYTAYLADTGEHALRLVARHHPDLLLLDLGLSGMDGLEV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121 LR LR PV +LSG + KV+ L GADDY+ KPF +EL AR+RA +RRS Sbjct: 75 LRGLR-GWTDVPVVVLSGRDTEPMKVQALDLGADDYVIKPFGMDELFARVRAAMRRSAVP 133 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ + T D +V+L AK V G + LT +++ ++E+L+ + +T + LN ++ Sbjct: 134 EYEAAVDTADFTVDLAAKQVLRGGEPVRLTPRQWHIVEVLARNPDRLVTHKHLLNEVWGP 193 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + VF+ K+R++L Y T G GY R Sbjct: 194 AYGRETNYLRVFMTKIRQRLEPDPPRPRYFLTEPGLGYRFRP 235 >gi|163784708|ref|ZP_02179524.1| Two-component response regulator czcR [Hydrogenivirga sp. 128-5-R1-1] gi|159880026|gb|EDP73714.1| Two-component response regulator czcR [Hydrogenivirga sp. 128-5-R1-1] Length = 196 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 64/197 (32%), Positives = 117/197 (59%), Gaps = 7/197 (3%) Query: 26 NVYVTDL---GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 N ++TD GE+ ++ + Y+++ IILD+ L I GF + +R I TP+ +L+ S Sbjct: 1 NNFLTDSAFDGEEALDYIENYDYNIIILDIMLPKIDGFRLCEIIRKKNIQTPILMLTAKS 60 Query: 83 SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVE 142 + +DKV+GL GADDY+SKPF+ EEL+AR++A++RRS + +++ + + +++ + V Sbjct: 61 ATQDKVKGLNIGADDYLSKPFDMEELIARVKALIRRSSTNKSNVLKINNYTFDIENRIVY 120 Query: 143 VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202 G +I LT K + +++ L + + ++ + +N +D D P + + I LRK L Sbjct: 121 KNGKKIELTPKLFCILQQLLINRGKIVSYDALMNRCWDITDYPTKETVRANIKLLRKLLE 180 Query: 203 NAAGGKNYIETVWGRGY 219 + K+ I+ + G GY Sbjct: 181 D----KDLIKNIPGVGY 193 >gi|160935144|ref|ZP_02082527.1| hypothetical protein CLOBOL_00039 [Clostridium bolteae ATCC BAA-613] gi|158441875|gb|EDP19572.1| hypothetical protein CLOBOL_00039 [Clostridium bolteae ATCC BAA-613] Length = 229 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDDK++ + +++ LK+ + + D G GI L D I+LDLGL DI G EV Sbjct: 6 ILVIEDDKSIQNFMKISLKTRGYAYILADNGLSGISLFYADHPDLILLDLGLPDIDGMEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 LR +R K P+ ++S +K+ L GADDY++KPF+ EEL+ARIR +R + Sbjct: 66 LRQIR-QKSDVPIIVVSARGQEREKISALDQGADDYVTKPFSAEELLARIRVGLRHKSST 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 H + ++ + + + V +HLT EY+M+ LL LT ++ Sbjct: 125 MNHQEQEFCLDYFRLDFEKRKLYVHDQEVHLTPLEYKMMVLLVNNSGKVLTHHYIQQEVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + VF+ +R+K+ + +I T G GY Sbjct: 185 GYDTTDDYQSLRVFMANIRRKIEDNTANPRFILTEVGVGY 224 >gi|17158742|ref|NP_478253.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134691|dbj|BAB77249.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 245 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 122/247 (49%), Gaps = 22/247 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI-----ILDLGLT 55 M++LL+ED+ L SI+ L E YV D DG E + E D I D L Sbjct: 1 MKVLLVEDEPDLGASIQRKLSKEK---YVVDWVLDGNEAWIYLEDDLTQYTLAIFDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G E+ + LR + PV +L+ S+ DKV GL +GADDY+ KPF EL+AR+RA+ Sbjct: 58 GMSGIELCKRLRNRGNALPVLMLTAKDSMADKVAGLDAGADDYLIKPFGMAELLARLRAL 117 Query: 116 VRRSRGHAQSL--------IVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLS 162 RRS SL + G L ++ T+ Q I+LT KE+Q++E L Sbjct: 118 QRRSALGGASLTSQFQPLQLQVGGLILDCGNCTISRQYPNGENKVIYLTKKEFQLLEYLM 177 Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R NT +T++ LNHLY E ++ I LR+KLS G IETV GY Sbjct: 178 KRPNTVITRDQILNHLYAFSAERVSNVVAAQIRLLRRKLSE-YGCDGLIETVPSMGYRFN 236 Query: 223 ENAKDET 229 D T Sbjct: 237 PGNADST 243 >gi|125973922|ref|YP_001037832.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005047|ref|ZP_05430018.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418085|ref|ZP_06249105.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714147|gb|ABN52639.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255991015|gb|EEU01126.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409487|gb|EFB39745.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939876|gb|ADU73910.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 232 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I + +D+ + + I+ L E ++V G +E D +++D+ + +I GF + Sbjct: 7 IYIADDEINICNIIKSFLVKEGYDVETFTDGRSILEAFNKKPADLLVIDIMMPEIDGFSL 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R + S P+ I+S + DK+ GL G+DDY++KPF+ EL+ARI++I RR Sbjct: 67 CSTIR-RQSSVPIIIVSAKDTEPDKIAGLTLGSDDYLTKPFSPMELIARIKSIFRRIELD 125 Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + H S+ I GD+ +N+D K E G I LTG E+ ++ L+ KN +++ L+ Sbjct: 126 KMHNDSVREIRIGDIVINVDKKQAEFNGKNIGLTGTEFNLLYYLAKNKNRAVSRSELLDK 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E + D I +LRKKLS+ +G IETVWG G+ + E Sbjct: 186 VWGFENYVETRATDDTIKRLRKKLSD-SGSSLKIETVWGFGFKVNE 230 >gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 243 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 125/241 (51%), Gaps = 10/241 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+ LA + L E F V D G G E +D I+LDL L + G + Sbjct: 4 RLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESYDLILLDLMLPGMNGLD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR ++TP+ IL+ + + V+GL+SGADDYI+KPF EL+AR+ A++RR+ G Sbjct: 64 ILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTSG 123 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + S I G+L + + V + G I L KE++++ LS + LT++ Sbjct: 124 GDEGVLSDQKDSSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232 +N ++ + +DV + LRKKL +I+++ G GY L N K Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKL-ELDPDSVHIDSIRGVGYKLVVNKKRSASHL 242 Query: 233 L 233 L Sbjct: 243 L 243 >gi|302528568|ref|ZP_07280910.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302437463|gb|EFL09279.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 244 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 114/218 (52%), Gaps = 4/218 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ A+A L L+ + F V V G + + A++LD+GL+ + G E+ Sbjct: 27 VLVVEDETAIAELAALYLRRDGFGVEVEPDGAKALAAIRRLRPVAVVLDIGLSGMDGIEI 86 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 RALR A TPV ++ D++ GL+ GADDY++KPF+ EL AR+R ++RR+ G Sbjct: 87 CRALRAAGDWTPVLFVTARDDELDRLLGLEIGADDYLTKPFSPRELAARVRTVLRRASGS 146 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + G + +++ + + LT E+ ++ L L+++ L+ ++ Sbjct: 147 PATTLACGGVRIDVPGRRAWAGEAEVALTSTEFDLLAYLLRHPGQVLSRDQLLSAVWGYA 206 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + +DV + +LR KL G + I TV G GY Sbjct: 207 AAAGTRTVDVHVAQLRAKL----GDDSPIRTVRGIGYA 240 >gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory proteinPhoP [Leuconostoc kimchii IMSNU 11154] gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory proteinPhoP [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +++ ++ L+ + V V G+ EL FDAI+LDL L + G Sbjct: 3 KILVVDDETSISTLLKYNLEQNGYTVTVAADGQTAYELIGKQNFDAILLDLMLPVMDGMT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VL+ +R KISTPV +++ D+V GL+ GADDYI+KPF+ E++AR++A++RRS+ Sbjct: 63 VLKTIRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQV 122 Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H +S I +L ++ + K V + LT +EY+++ S R + +E L Sbjct: 123 DHHESERTDAIKIQNLVIDDNKKVVTKNDKILTLTPREYELLLYFSQRVGRVIDRETILT 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ E +++D+ I LR+K+ ++TV G GY + Sbjct: 183 AVWGYEFVGESRMVDMHISNLREKIETNPKSPEVLKTVRGFGYTM 227 >gi|260554524|ref|ZP_05826745.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|260411066|gb|EEX04363.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] Length = 228 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 6 MRILIIEDEMKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 65 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ LR +KI PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR Sbjct: 66 SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL +++ V G+ I L+ E+ ++ L L K +T+ + ++ Sbjct: 124 QYLQENELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + IDV + +LR K+ K I T+ G GY Sbjct: 184 NINFDTDTNFIDVAVRRLRSKIDEGYELK-LIHTIRGLGY 222 >gi|241759488|ref|ZP_04757592.1| DNA-binding response regulator [Neisseria flavescens SK114] gi|241320270|gb|EER56603.1| DNA-binding response regulator [Neisseria flavescens SK114] Length = 225 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD +A ++ LK + V G + + +D ++LDLGL G Sbjct: 1 MRVLLVEDDAMIAQAVSANLKDTGYAVDWVSRGSEVAAVVAAQAYDLLLLDLGLPGKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL +R + PV I++ + ++ GL GADDYI KPF+ EL AR+RA++RR Sbjct: 61 DVLAQIRNGGCTVPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRRHG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G AQ+L+ G +++N EV G I L+ KE+ +++ L LR L++ + + Sbjct: 121 GQAQTLLSNGIITLNPSTHQAEVVGQEQAIMLSNKEFAVLQALLLRPGMILSRSDLEDKI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 Y +E E +D I LRKKL GK I+ V G G+++ +N Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKEAIQNVRGVGWLVAQN 221 >gi|196042864|ref|ZP_03110103.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|225865207|ref|YP_002750585.1| regulatory protein VanR [Bacillus cereus 03BB102] gi|229185478|ref|ZP_04312659.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1] gi|196026348|gb|EDX65016.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|225787874|gb|ACO28091.1| regulatory protein VanR [Bacillus cereus 03BB102] gi|228597988|gb|EEK55627.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1] Length = 231 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D+ G Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVSGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-EKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ D I V I LR+K+++ YI+TVWG GY Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGY 227 >gi|109453312|gb|ABG34136.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453316|gb|ABG34138.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453318|gb|ABG34139.1| PhoP [Salmonella enterica subsp. diarizonae] Length = 213 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 6/206 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSN 203 LY + E IDV + +LRKK+ Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQT 203 >gi|111020343|ref|YP_703315.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110819873|gb|ABG95157.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 222 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 114/222 (51%), Gaps = 10/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI ++EDD + ++I L + G + L E D ++LDLGL D G Sbjct: 4 MRIAVVEDDDGVGNAIVAGLTRQAHQPVRMKFGSE--LLLHHGEVDFVLLDLGLPDRDGL 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EVLR LR + PV IL+ VRGL+ GADDY+ KP EL ARI + RRS Sbjct: 62 EVLRQLRQVS-AVPVIILTARDDERSVVRGLRGGADDYLVKPARMSELFARIEVVRRRSM 120 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G A +VTGD+ V+LD++TV V G + LT KE+ ++E+L ++++ ++ Sbjct: 121 AVEGGAPREVVTGDVRVDLDSRTVTVAGTEVDLTSKEFALLEILLENPGAAVSRQQLMDR 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +DV I LR KL I T+ G GY Sbjct: 181 VWGDAFVAVSRSLDVHIGTLRAKLDR----PGLISTIRGFGY 218 >gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 224 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ RI+ + RR Sbjct: 60 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRV 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ V + V V G I LT +E+ + +L ++ L Sbjct: 120 KKTEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|210623054|ref|ZP_03293541.1| hypothetical protein CLOHIR_01491 [Clostridium hiranonis DSM 13275] gi|210153857|gb|EEA84863.1| hypothetical protein CLOHIR_01491 [Clostridium hiranonis DSM 13275] Length = 237 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 13/232 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + I L ++++ V + G++ ++ D ++LDLGL DI G +V Sbjct: 6 ILVVEDDSTIRKFICTALTTQDYEVIESSTGKEAVQNAIAKSPDVMLLDLGLEDIDGIDV 65 Query: 63 LRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R +IS P+ ++S +KV +GADDYI+KPF+ EL+AR+R +R Sbjct: 66 IKTVR--QISDLPIIVVSAREQDREKVEAFDTGADDYITKPFSIVELLARVRVALRHKEN 123 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + GDL ++ D + V V G IHLT EY+++ LL+ LT Sbjct: 124 KSVDISMPKEEKEDTFSVGDLFIDYDKRKVTVSGENIHLTPIEYEILSLLARNHGKVLTH 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ G E K + VF+ +R+K+ YI T G GY L + Sbjct: 184 NYIIKKIWGGVIGGETKSLRVFMATIRRKIEKQPANPQYIMTEVGVGYRLND 235 >gi|189500624|ref|YP_001960094.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] gi|189496065|gb|ACE04613.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] Length = 236 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 125/229 (54%), Gaps = 8/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ LA ++ L+ ++ + + GE+ + L D ++LD+ L I GFEV Sbjct: 6 ILVVEDDRNLAKLLKYNLEKASYKCVLAESGEEALRLLADRAVDLVLLDVMLPGIDGFEV 65 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR ++ P+ +L+ DKV G + G DDY+ KPF+ EL RIRAI++R R Sbjct: 66 CRKLRQQQLHRELPIVLLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 Q ++V L V++ +V++ G I LT E++++ +L R+ ++E L+ Sbjct: 126 RGKQDVREVLVCDGLEVDIARHSVKLDGRDIVLTLMEFKLLAVLLKRRGHAQSRETLLSD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 ++D + ID I +LR+KL YI+TV G GY L E+ + Sbjct: 186 VWDVDKTINTRTIDTHITRLREKLGETG---KYIKTVRGLGYKLEESGE 231 >gi|299139321|ref|ZP_07032496.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298598590|gb|EFI54753.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 235 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 131/225 (58%), Gaps = 4/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD+ +A ++ +K+ ++V V GE+G L ++LDL L G E Sbjct: 9 RVLVVEDDRKMADALVSGIKAAGYDVSVARTGEEGFFLVHKLFPHLLVLDLHLPQRNGLE 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L+ +R + + IL+ ++ ED+V GL +GADDY+ KPF+ EL+ARI +++RR Sbjct: 69 ILQQIRAQALDIRILILTSNNTPEDRVTGLNAGADDYLGKPFSFPELLARIGSLLRRMPL 128 Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 A + L+ DL+++ +++T R+ LT +E+ ++ L+ + +++EM ++ Sbjct: 129 PASAGLLRIADLALDTESRTASRSEVRLDLTTREFDLLLYLAENRGRAVSREMLAKDVWK 188 Query: 180 -DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + R P +IDV + +LR+K+ + K + T+ G G++LRE Sbjct: 189 ENSRFTPLDNVIDVQMTRLRRKVDDPFTTK-LLHTIRGVGFILRE 232 >gi|319762025|ref|YP_004125962.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330826156|ref|YP_004389459.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317116586|gb|ADU99074.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329311528|gb|AEB85943.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 243 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 ++L+++DD + + L E F V V EDG L + D I+LDL + Sbjct: 10 KVLVVDDDARIRDLLRRYLTQEGFEVMV---AEDGKALNRILLRETVDLIVLDLMMPGED 66 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 67 GLSICRRLRAASDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 Query: 119 SRGHAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +GD + +L + ++ G + LT E+ M++ L L+ Sbjct: 127 RPPQEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLS 186 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L L GR+ EP + +DV I +LRK + A YI+TVWG GYV Sbjct: 187 REK-LALLARGREFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVF 237 >gi|88703693|ref|ZP_01101409.1| Response regulator receiver domain [Congregibacter litoralis KT71] gi|88702407|gb|EAQ99510.1| Response regulator receiver domain [Congregibacter litoralis KT71] Length = 258 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD+ +A I + L+ N ++ D G+ ++L +D I+LDL L + G + Sbjct: 23 RILVVEDDEDIARLIVMHLEDLNADLLHCDQGDKALQLALSNAWDLIVLDLRLPGMGGLD 82 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R LR TP+ +L+ SS D+V GL+ GADDY+SKPF+ EL AR +A++RR+R Sbjct: 83 ICRQLRERGNITPILMLTAKSSELDRVLGLELGADDYLSKPFSPLELTARAKALLRRTRM 142 Query: 121 ------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 G A+ L + G + V + G RI LT +E+ ++ + + Sbjct: 143 NRHQENAELEQNGAAEPLKL-GPFCICDRTHRVTMHGDRIELTSREFDLLLHFARQPGRV 201 Query: 169 LTKEMFLNHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L+ ++ G D E ++ I +LR K+ G Y+ TVWG GY Sbjct: 202 FRRSELLDEVWGYGHDGYE-HTVNTHINRLRGKIETDPGNPQYVNTVWGVGY 252 >gi|323143646|ref|ZP_08078320.1| putative response regulator ArlR [Succinatimonas hippei YIT 12066] gi|322416579|gb|EFY07239.1| putative response regulator ArlR [Succinatimonas hippei YIT 12066] Length = 225 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 13/231 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+K L+++I L SEN+ E+ Y++D ++LDL L G Sbjct: 1 MKLLIIEDEKELSNNIVTYLSSENYVCEQAFTYEEAQIKLDLYDYDCVLLDLMLPGGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR +R V I+S S++DKV+GL+ GADDY+ KPF+ EL RI AI+RR Sbjct: 61 DILRDIRRRHNPAGVIIVSAKDSLDDKVKGLEIGADDYLPKPFHLAELSMRIYAIIRRKA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH--- 177 + + + + ++ ++L KTV++ I LT EY+++ KN ++K H Sbjct: 121 FASNNTLYSNNIEIDLLGKTVKINDQSILLTRTEYELLLFFISNKNRVVSKASIAEHISG 180 Query: 178 ----LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L D D I I L+ KL+ +G K+ I+TV+G GY EN Sbjct: 181 EMSDLLDNHD-----FIYSHIKNLKAKLA-KSGIKSCIKTVYGAGYKWTEN 225 >gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 231 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 2/222 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD + + + L+ E V GE+G+ +D ++LDL L G EV Sbjct: 11 VLIIEDDDRIRRVVSITLRREGLEVTEAGSGEEGLARLAERPYDIVLLDLVLPGRSGLEV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R +TPV +++ + D + GL++GADDY++KPF EEL ARIRA+ RR+ G Sbjct: 71 CREIRRVS-TTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARIRALARRTGGS 129 Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + IV GDL + V G + LT E+ ++ L+ + ++E L ++ Sbjct: 130 GPRPRIVVGDLEIAPADGVVTRGGEVVPLTRTEFTLLLELATERGRVFSREELLERVWGY 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +++DV + +LRKK+ + TV G GY L E Sbjct: 190 DYFGDSRLVDVHVRRLRKKVEADPAAPTVVTTVRGMGYRLPE 231 >gi|225175429|ref|ZP_03729424.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169181|gb|EEG77980.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 230 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 122/223 (54%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + +L++E F V + G + + + +ILD+ + ++ G E Sbjct: 4 KILVVDDEEKIRRILRQVLENEGFTVLEAENGSEALSVFLNKNPVLVILDVMMPEMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 L+ +R + TPV ILS ++ DK G DDY+SKPF+ E+ R++A+++R R Sbjct: 64 FLKKIR-PQFDTPVIILSAKDALVDKAVGFTLDIDDYVSKPFSALEMAMRVKAVLKRYRK 122 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 AQ ++ G+L +N D+ + G I LT +E++++ +L L++E L Sbjct: 123 VEKSSAAQDIVKIGELEINFDSYQLFAGGEEIDLTPREFKLLGILMRNAGMVLSREQLLE 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D ++ +I+VF+ +LR+K+ Y++TVWG GY Sbjct: 183 LADDREYFGDLNVINVFVRRLRQKIEKDPANPKYLQTVWGVGY 225 >gi|83747585|ref|ZP_00944622.1| probable two-component response regulator [Ralstonia solanacearum UW551] gi|207725031|ref|YP_002255428.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|207738626|ref|YP_002257019.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|83725765|gb|EAP72906.1| probable two-component response regulator [Ralstonia solanacearum UW551] gi|206590261|emb|CAQ37222.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|206591994|emb|CAQ58900.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 226 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 127/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ + L++E + V + G +G++L + E ++LDL L + G Sbjct: 1 MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR + P+ +L+ ++ I+D+V GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 61 ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V DL ++ + V G I LT KE +ELL ++E L+++ Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++P I+DV++ +LR K+ + ++TV G GY L Sbjct: 181 WGANEDPLTNIVDVYVRRLRSKI-DEGHPVPLLKTVRGLGYRL 222 >gi|325288450|ref|YP_004264631.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324963851|gb|ADY54630.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 223 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 130/229 (56%), Gaps = 13/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ LA ++ +LK + V + GE G ++ + +D IILD L + G Sbjct: 1 MRLLLVEDEEKLAEALAYILKKNKYGVDIAYDGETGQDMAESGVYDLIILDWMLPERDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR+ KI + +L+ S++D+V GL SGADDY+ KPF EEL+ARIRA+ RR Sbjct: 61 TVLKNLRLKKIDIAIILLTAKDSVQDRVIGLDSGADDYLVKPFASEELLARIRALSRR-- 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG------HRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L+ LS+ D +QG +I LT KE +++LL LTKE Sbjct: 119 -KSNVLLPNEKLSLG-DIVFDPLQGEIICGEEKIKLTLKESLLLDLLLRHAGQVLTKEQI 176 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L+ ++ E E ++++I LR+K+ + + IET+ G GY L+E Sbjct: 177 LDRVWGLDSEVETGTVELYIHYLRRKIPSDS---IRIETIRGIGYSLKE 222 >gi|320539293|ref|ZP_08038963.1| putative DNA-binding response regulator in two-component regulatory system with CpxA [Serratia symbiotica str. Tucson] gi|320030685|gb|EFW12694.1| putative DNA-binding response regulator in two-component regulatory system with CpxA [Serratia symbiotica str. Tucson] Length = 237 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 12/229 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E FN+ V GE + L + ++LD+ + G + Sbjct: 4 KILLVDDDRELTLLLKELLEMEGFNITVAHDGEQALSLLD-SSINLLLLDIMMPKKNGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 63 TLKELRQHH-HTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 121 Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + Q +L V G L +N + G + LTG E+ ++ LL+ +++E Sbjct: 122 NEQQQHVDTNAPTLDVDG-LQLNTGRQEASFDGKVLDLTGTEFTLLYLLAQHLGQVVSRE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + R P + ID+ I LR+KL N G + +T+ GRGY++ Sbjct: 181 LLSQEVLGKRLTPFDRAIDMHISNLRRKLPNRKDGHPWFKTLRGRGYLM 229 >gi|291617790|ref|YP_003520532.1| BasR [Pantoea ananatis LMG 20103] gi|291152820|gb|ADD77404.1| BasR [Pantoea ananatis LMG 20103] Length = 228 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 20/238 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L L+ + DG+ + E + ++LD+G Sbjct: 1 MKILIVEDDALLLQGLVLALEGAGYVC-------DGVSTVRSAEAHLASGLYSLVVLDIG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G +L+ LR K PV IL+ +IE+++ GL +GADDY+ KPF +EL+ARIR Sbjct: 54 LPDEDGLHLLQRLRRQKQMQPVLILTARDTIEERIAGLDAGADDYLIKPFALDELLARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR S + G+LS+++ + + + + LT KE+ ++ L L+ + +E+ Sbjct: 114 ALIRRHVNQGDSRLEVGNLSLDMTHRQIHLDDVLLDLTPKEFSILSRLMLKAGHPVHREL 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230 +Y+ +EP ++V I LR K+ GK I TV G GY L + A++E+ Sbjct: 174 LYQDIYNFDNEPSTNTLEVHIHNLRDKV-----GKATIRTVRGFGYALSQPRAENESS 226 >gi|229090890|ref|ZP_04222118.1| Two-component response regulator vanR [Bacillus cereus Rock3-42] gi|228692499|gb|EEL46230.1| Two-component response regulator vanR [Bacillus cereus Rock3-42] Length = 242 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ + ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINYNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q + + +N+ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238 >gi|163815763|ref|ZP_02207134.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759] gi|158448904|gb|EDP25899.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759] Length = 239 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED+K + + L + V GE+ +E E+D I+LDL L + G Sbjct: 14 LRLLIVEDEKQICDMVAKGLYDAGYEVDTCYDGEEALECILSEEYDLIVLDLNLPGVDGM 73 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR T V ILS I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR Sbjct: 74 EILKELRQQNEETKVIILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 133 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +G + + + +G ++ LT KE ++E L L +++E + H++D Sbjct: 134 VQKDVCLESGGIKFDTIKREAYAKGEKVPLTRKENGILEYLLLNLGRPVSQEELMEHVWD 193 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I V + LR+KL G + V G GY +RE + Sbjct: 194 ASVDSFSGAIRVHMSSLRRKLKAVLGYDPILNKV-GEGYKIREES 237 >gi|121595458|ref|YP_987354.1| osmolarity response regulator [Acidovorax sp. JS42] gi|222111672|ref|YP_002553936.1| osmolarity response regulator [Acidovorax ebreus TPSY] gi|120607538|gb|ABM43278.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] gi|221731116|gb|ACM33936.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 243 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 ++L+++DD + + L E F V V EDG L + D I+LDL + Sbjct: 10 KVLVVDDDARIRDLLRRYLTQEGFEVMV---AEDGKALNRILLRETVDLIVLDLMMPGED 66 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 67 GLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 Query: 119 SRGHAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +GD + +L + ++ G + LT E+ M++ L L+ Sbjct: 127 RPPQEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLS 186 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L L GR+ EP + +DV I +LRK + A YI+TVWG GYV Sbjct: 187 REK-LALLARGREFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVF 237 >gi|90019939|ref|YP_525766.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89949539|gb|ABD79554.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 236 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 126/227 (55%), Gaps = 13/227 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD +LA I L + N++V G++ +++ + D ++LD+ L GFEV Sbjct: 10 ILLVEDDASLAQWIADYLTNNNYHVTTVMRGDEAVKVILTTKPDLVLLDIMLPGKDGFEV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + +R A P+ +++ D+V GL+ GA+DYI+KP LVARI+++++ + Sbjct: 70 CKEVR-ASYPNPILMMTARDDEIDEVLGLEIGANDYITKPVRPRALVARIKSLLKNTAAA 128 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S I G LS++ A++V V G + L+ EY + +L+ +++E + + Sbjct: 129 DKSDVASTINIGGLSIDNTARSVHVNGVPLSLSSSEYNVFWVLANNAGEPISRENLIKAI 188 Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y+G D + ID+ + +LRKK+ + + I TVWG+GY+L Sbjct: 189 RKIQYNGYD----RSIDIVVSRLRKKIGDDSSAPTRIVTVWGKGYML 231 >gi|323495121|ref|ZP_08100207.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546] gi|323310622|gb|EGA63800.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546] Length = 231 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 120/228 (52%), Gaps = 9/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD L ++ +L E F V + GE+G+EL + D I+LD+ + + G E Sbjct: 4 ILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLELLS-NDIDLILLDVMMPKLNGMET 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 L+ LR TPV +L+ D+V GL+ GADDY+ KPF+ EL+ARIRAI+RR+ Sbjct: 63 LKRLR-ENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQSS 121 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +G I D+ + + QG + LT E+ ++ TLTKE Sbjct: 122 ANGKQGKNSDCIEYQDIQIYPGKQEAYCQGELMVLTTTEFALLSHFVQNPGQTLTKEALS 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + R + ID+ + LRKKL GK+ I+T+ GRGY+L E Sbjct: 182 LDVLGKRLAAFDRAIDMHVSNLRKKLPERKDGKSRIKTLRGRGYLLVE 229 >gi|308234600|ref|ZP_07665337.1| two component transcriptional regulator, winged helix family protein [Atopobium vaginae DSM 15829] Length = 223 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 125/221 (56%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IED+K LA +I +L +++ G+ G+ C+ +DA I+D L + G Sbjct: 1 MNILVIEDEKNLADAIVRILTDAHYHAEAVYDGKSGLISCQSGLYDAAIVDRMLPGMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++++ +R + S P+ IL+ + +DKV GL +GADDY++KPF EL+AR+RA+ RR Sbjct: 61 DIVKEVRRSGDSMPILILTARTFTQDKVDGLDAGADDYLTKPFEAPELLARLRALTRRQG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + D S++L + + H +HL+GKE++++++L + ++K+ L +++ Sbjct: 121 DVIIEQMKFADFSLDLSTHDLMCKNHSVHLSGKEFEVLKMLLSAPSRVVSKQDLLTYVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++ ++ LRKKL+ K I T+ GY L Sbjct: 181 TTADASENSVEAYVSFLRKKLAY-VHSKVQITTLRMLGYRL 220 >gi|256833046|ref|YP_003161773.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686577|gb|ACV09470.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 227 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 119/218 (54%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++DD AL+ I ++LK+E F+ G+ ++ + D ++LDL L G Sbjct: 4 RVLVVDDDTALSEMIGIVLKAEGFDAEFCADGDSALQTFHDTQPDLVLLDLMLPGKDGTV 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R + P+ +L+ S D V GL++GADDY+SKPF +ELVARIR +RR Sbjct: 64 VCREIR-RESGVPIIMLTAKSDTVDVVAGLEAGADDYVSKPFKPKELVARIRTRLRRVEE 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ GDL +++ V G I LT E+ ++ L+ + L++E+ L ++ Sbjct: 123 PEPEILRIGDLDIDVTGHKVTRDGQVISLTPLEFDLLVALARKPWQVLSREVLLEKVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + + TV G GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEHDPESPEIVLTVRGVGY 220 >gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 235 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 127/234 (54%), Gaps = 10/234 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ ++ ++ F V G++G EL + D I+LDL L + G E Sbjct: 3 KILVVDDELSIVTLLQFNIEKAGFEVITASDGQEGYELAIAEKPDLIVLDLMLPGMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR KI P+ +L+ DK+ GL+ GADDY++KPF+ E+VARI+AI+RR+ Sbjct: 63 VTKKLRSEKIDVPILMLTAKDEELDKIIGLELGADDYLTKPFSPREVVARIKAIMRRTES 122 Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ + GDL + ++ + LT KE++++ L+ K +++ Sbjct: 123 RKEAAEETESPTAELTIGDLHIFPESYEAYRGDQLLELTPKEFELLLFLATNKGKVFSRD 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ +++ E +I+DV + LR+K+ YI+T+ G GY + EN K Sbjct: 183 QLLDAVWNYDYIGETRIVDVHVSHLREKVEPDTKRPLYIKTIRGFGYKM-ENMK 235 >gi|226312203|ref|YP_002772097.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095151|dbj|BAH43593.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 11/223 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL++D+ + + L+ E ++V G++ +E+ IILDL L D+ G EV Sbjct: 4 ILLVDDEPQILEILSSYLQKEGYHVLTAQTGKEAVEMATTISLTCIILDLMLPDLSGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + P+ +L+ S D++RGL GADDY+ KPF+ ELVAR+RA++RR+ + Sbjct: 64 CVQIR-KESRVPILMLTAKSGEADRIRGLTIGADDYLIKPFSPRELVARVRAVMRRAGDY 122 Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178 + + GDL+++++ K V G + +T EY+++ L T +E + + Sbjct: 123 STLSDFVEVGDLTISMNEKRVTKNGVALEVTPNEYRLLTTLVRYPGRTWGREELVREVMG 182 Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++G D + ID I LR+K+ YI+TV+G GY Sbjct: 183 FDFEGYD----RTIDTHIKNLRQKIEADPKQPEYIKTVYGLGY 221 >gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ RI+ + RR Sbjct: 59 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRV 118 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ V + V V G I LT +E+ + +L ++ L Sbjct: 119 KKAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|154500840|ref|ZP_02038878.1| hypothetical protein BACCAP_04525 [Bacteroides capillosus ATCC 29799] gi|150270340|gb|EDM97666.1| hypothetical protein BACCAP_04525 [Bacteroides capillosus ATCC 29799] Length = 233 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + I LK+ ++ GE + + + I+LDLGL D+ G EV Sbjct: 6 ILVVEDDTPVRNLITTTLKAHDYRFLTAANGESAVMEASSHNPEIILLDLGLPDMDGVEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +R + + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IHKVR-SWSNMPIIVISARSEDTDKIEALDAGADDYLTKPFSVEELLARLRVTQRRLAAL 124 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ G L V+ A + G +HLT EY+++ LL LT Sbjct: 125 QIGTINTDAVFTNGKLKVDYAAGCAFLDGEELHLTPSEYKLLCLLCKNVGKVLTHTFITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ + +V + VF+ LRKKL YI+T G GY Sbjct: 185 QLWGRSWDNDVASLRVFMATLRKKLEKEPQSPQYIQTHIGVGY 227 >gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT] gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 228 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 131/225 (58%), Gaps = 15/225 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEF--DAIILDLGLTDIP 58 +IL+++DD+ + I++ L+S Y T+ DG FYE+ D ++LD+ L + Sbjct: 7 KILIVDDDENICEIIKMYLESSG---YSTECCYDGKSAQTAFYEYKPDLVLLDVMLPHMD 63 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +VL+ +R + TPV +L+ DKV L+ GADDYI KPF +EL+ARI+A++RR Sbjct: 64 GIDVLKWIR-KECETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122 Query: 119 S--RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ L++++++ V + + I + KE++++ L+ N T+E L Sbjct: 123 YNVENEDKDVLKFKSLTIDINSYIVVYKDNEIKMPPKEFELLYYLASNCNKVFTREQLLC 182 Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 ++ G D P + + +DV I +LR+KL GG N+ IETVWG GY Sbjct: 183 EVW-GYDYPGDSRTVDVHIKRLREKLQ---GGPNWQIETVWGVGY 223 >gi|152966752|ref|YP_001362536.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151361269|gb|ABS04272.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 220 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 5/219 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ ED+ +A +E L++ + + G +L FD +ILD+GL + GF V Sbjct: 4 ILIAEDETRIAAFVEKGLRANGYATTIATDGRTAHDLAGTGLFDLLILDIGLPVVDGFTV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR LR + + PV IL+ ++ D V GL GADDY++KPF EEL+ARIR +R R Sbjct: 64 LRRLRAERHALPVIILTARDAVADTVAGLDGGADDYVTKPFRFEELLARIRLRLRDDRAA 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 +++ G+L ++L ++T V G + L+ +E+ + E L++E L+ ++ Sbjct: 124 EVTVLAAGELQLDLLSRTAAVAGRSVALSSREFSLAEAFLRHPGQVLSREQLLSSVWGYD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++DV++ LRKKL G ET+ G GY L Sbjct: 184 FDPGSNVVDVYVRYLRKKL-----GAGRFETIRGMGYRL 217 >gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42] gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42] gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens LL3] Length = 240 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 128/227 (56%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + + L+ EN+ + + G++ I++ ++D ++LDL + G E Sbjct: 8 KILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDYDLVLLDLMMPGTDGIE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR K +TP+ +L+ ++V+G ++G DDYI KPF+ E+V R++A++RR+ Sbjct: 68 VCRQLREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++++V LS++ DA V G + LT KEY+++ L+ + +E Sbjct: 127 TSYLTANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219 L ++ +++ +D + +LR+KL+ + G I TVWG GY Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPGAAKKIVTVWGVGY 233 >gi|313895549|ref|ZP_07829105.1| putative transcriptional activator protein Irlr [Selenomonas sp. oral taxon 137 str. F0430] gi|312975675|gb|EFR41134.1| putative transcriptional activator protein Irlr [Selenomonas sp. oral taxon 137 str. F0430] Length = 225 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL EDD L I+ ML+ + V G+D E + E+D +ILD + G Sbjct: 1 MRVLLAEDDLRLGKLIQYMLEQNDITVEWVTNGDDIYEYATYTEYDILILDWMMPGENGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR + + +L+ S+ED+V GL +GADDY+ KPF EL+AR+RA+ RRS Sbjct: 61 DACARLRKSGYDRAILMLTARDSVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRST 120 Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q + G +N A +E G I L+ +E+Q+ +LL+ + +++ L+ ++ Sbjct: 121 QKIQHEVDEIGGFRLNRTANILEKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRIW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ID ++ LRKKL A+ G+ I+T+ G GY L Sbjct: 181 GLESDVSSNNIDSYMKMLRKKLDAASEGEA-IKTIRGVGYKL 221 >gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 224 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ RI+ + RR Sbjct: 60 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRV 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ V + V V G I LT +E+ + +L ++ L Sbjct: 120 KKAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|212635951|ref|YP_002312476.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212557435|gb|ACJ29889.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 227 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 127/228 (55%), Gaps = 4/228 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ ++ LK + + + + + G+DG+ L ++ I+LD L + G Sbjct: 1 MRILVIEDNLTTRQYLQKALKEQGYEIDLAENGQDGLFLALEGDYQLILLDRMLPKLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR A TPV ILS + S+ ++V+GL+ G+DDY+ KPF EL+ RI +++R Sbjct: 61 TVLTTLRNAGKQTPVLILSALDSVSERVKGLREGSDDYLIKPFALSELLVRIEILIQRKG 120 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ +++ DL + L ++ V + + L KE++++ L +++ + Sbjct: 121 SNSDKQTNVLQVADLKMELLSRKVFRGKNEVILQPKEFKLLRYLMEHSGQVVSRSLLFEA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D + +P+ +IDV + +LRKK+ G + +ETV G GY + E Sbjct: 181 VWDYQFDPQTNVIDVHMARLRKKVE-FDGLPSLLETVRGVGYRMVEQG 227 >gi|121606759|ref|YP_984088.1| two component transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595728|gb|ABM39167.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 230 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 13/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD +A + L+ + V V + FD ++LDLGL D G Sbjct: 1 MRILVVEDDAGIAVGLRTNLQQRGYAVDVCGTLASAWAALRSEPFDLVLLDLGLPDGEGG 60 Query: 61 EVLRALRVAKIS--------TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 +L +R + + TP+ IL+ + D++ GL GADDY+ KPF+ +EL AR+ Sbjct: 61 RLLERVRQSPSAAGSLPDTLTPILILTARDQVADRISGLNLGADDYLVKPFDLDELEARM 120 Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RA++RR+ G A L+ GDL ++ A +V G + LT +E+ ++ LL + L+++ Sbjct: 121 RALLRRAAGRAHPLLAHGDLVIDPAAHSVLRAGQPVELTPREFALLLLLLESRGRVLSRQ 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LY D ++V + +R+KL G++ I+TV G GY + Sbjct: 181 QLEARLYSWDDGVGSNAVEVHVHHVRRKL-----GESLIQTVRGVGYFI 224 >gi|84683692|ref|ZP_01011595.1| two-component response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84668435|gb|EAQ14902.1| two-component response regulator [Rhodobacterales bacterium HTCC2654] Length = 223 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD A I E +V G + +D +++D L ++ G Sbjct: 1 MKILVVEDDPTTADFIARGFSEEGHSVDRLADGRSALGQAMQGSYDVLVVDRMLPELDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ALR A+++TP L+ + +ED++ GL++G DDY+ KPF EL AR+ A+ RR Sbjct: 61 SLVKALRAARVATPAIFLTSVGGVEDRIAGLEAGGDDYLVKPFAFGELSARVAALTRRPP 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ + GDL ++L + V G I L +E+ ++E L RK T+ M L +++ Sbjct: 121 LQAEETTLKAGDLEMDLVRREVRRAGRPIDLLPREFALLEHLLRRKGRVQTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P +++ I +LR K+ I TV G GY Sbjct: 181 DIHFDPGTNVVETHISRLRAKVDKPF-DHELIRTVRGAGY 219 >gi|291619427|ref|YP_003522169.1| CpxR [Pantoea ananatis LMG 20103] gi|291154457|gb|ADD79041.1| CpxR [Pantoea ananatis LMG 20103] Length = 267 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E F V V GE + L D ++LD+ + G + Sbjct: 38 KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLLD-NSIDLLLLDVMMPKKNGID 96 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 97 TLKELR-QQYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 155 Query: 122 HAQ-------SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q S + D L +N + + LTG E+ ++ LL+ +++E Sbjct: 156 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDSETLDLTGTEFTLLYLLAQHLGQVVSREH 215 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL + G + +T+ GRGY++ Sbjct: 216 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRRDGHPWFKTLRGRGYLM 263 >gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97] gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187] gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1] gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97] gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187] gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1] gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 234 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 123/225 (54%), Gaps = 10/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+K + I + LK+E + V + GE+G+EL K E I+LD+ + I G + Sbjct: 6 IMVVDDEKEIRELIAIYLKNEGYRVLQAEDGEEGLELLKKNEVHLIVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++V +I+ P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + GD+ +N+ V + + LT +E+ ++ELL+ + ++ E Sbjct: 124 MNGGISVQNENEVEIGDMKINVTTHKVTIADQVVKLTPREFAILELLARNQGMVMSAEQI 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V I K+R+K+ Y++TVWG GY Sbjct: 184 YERVWKEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGY 228 >gi|116878444|ref|YP_356197.2| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|114843080|gb|ABA88027.2| two component transcriptional regulator, winged helix family [Pelobacter carbinolicus DSM 2380] Length = 236 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 5/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+ +A + L+ E + V GE +EL + + +ILDL L I G EV Sbjct: 6 ILLVEDELHIARGLIFNLEQEGYRVIHVSSGEQALELAPWSQCLLVILDLMLPGISGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR P+ IL+ + +D++ GL++GADDY++KPF+ E + R+R +V RS + Sbjct: 66 CQQLRAQDPRLPILILTALGKEQDRIAGLEAGADDYLTKPFSLTEFLLRVRGMVNRSSWY 125 Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+ GD +V L E I LT E +M+++ + + LT+E L Sbjct: 126 RSTPAAEECFRFGDNAVYLQDHRAETPRGDIDLTELEVRMLQIFFDHEGSILTREKLLAS 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + E + +D FI +LRK + TV G+GY Sbjct: 186 VWGLAPDTETRTLDNFIVRLRKYFEPTPARPRHFLTVRGKGY 227 >gi|119775831|ref|YP_928571.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119768331|gb|ABM00902.1| response regulator receiver protein [Shewanella amazonensis SB2B] Length = 233 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 13/235 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLIEDD LA S++ L E F V+ G+D EL +FD I+ D+ L GFE Sbjct: 6 QLLLIEDDYQLARSVKRFLTKEGFEVHHFVNGDDLAELIASNQFDLILCDVMLPGTNGFE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + ++LR + + P ++ +S +ED+++G GADDYI KP LVARI+A ++R + Sbjct: 66 IAKSLRQS-FNGPFIFMTALSDVEDQLQGFNLGADDYICKPVPPPLLVARIKANLQRHKP 124 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 ++ I G+L ++ +TV V G + L+ E+ ++ +L + +++E Sbjct: 125 QVKTTEKIHYGNLEIDKQRRTVLVGGGLLPLSRYEFDLLWILLEHREEQVSREYLFTKTV 184 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 Y+G D + +D I +LRKKL + I T WG+GY+L E KD C Sbjct: 185 GREYNGID----RTVDGRISRLRKKLETNKKVRCRIYTSWGQGYMLSE--KDLNC 233 >gi|326802679|ref|YP_004320497.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326650499|gb|AEA00682.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 228 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 124/228 (54%), Gaps = 5/228 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59 M++L+++DDK + + + +E ++V G++ ++ + + + IILD+ + G Sbjct: 1 MKLLIVDDDKEIVELLTIYSSNEGYDVIQAYDGDEALKRISENPDIALIILDIMMPGKDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V++ LR ++ P+ +LS S+ DK+ GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 LTVVKELRSREVDVPILLLSAKSADMDKISGLTTGADDYVTKPFNPLEVMARVKSLLRRS 120 Query: 120 RGHAQS---LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I G L ++ ++ V+ + G I LT E+ ++ LL+ N + + Sbjct: 121 GASDQGSGDTIEIGPLIIHKNSHEVKTIDGEDIQLTALEFGILYLLASHPNEVFSADEIF 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ K + V + LR K+ A GG I TVWG GY + E Sbjct: 181 ERVWQQESVVSAKTVMVHVSHLRDKIETATGGDKVISTVWGVGYKISE 228 >gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC 19977] gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus] Length = 228 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +LA + +L+ E F + + G + + D ++LDL L + G +V Sbjct: 4 VLIVEDEDSLADPLAFLLRKEGFEATIVNDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR AK S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKQLR-AKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDS 122 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ G + +++D TV V G I L KE+ ++E L LT+ ++ Sbjct: 123 EETASGDGVLEAGPVRMDVDRHTVSVNGEAITLPLKEFDLLEYLIRNSGRVLTRGQLIDR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 226 >gi|169795463|ref|YP_001713256.1| putative two component heavy metal response transcriptional regulator [Acinetobacter baumannii AYE] gi|260549449|ref|ZP_05823668.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624] gi|332855218|ref|ZP_08435769.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013150] gi|169148390|emb|CAM86255.1| putative Two component heavy metal response transcriptional regulator [Acinetobacter baumannii AYE] gi|260407558|gb|EEX01032.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624] gi|332727595|gb|EGJ59017.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013150] Length = 228 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 6 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 65 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ LR +KI PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR Sbjct: 66 SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 123 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL ++L V G+ I L+ E+ ++ L + K +T+ + ++ Sbjct: 124 QYLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVW 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + IDV + +LR K+ K I T+ G GY Sbjct: 184 NINFDTDTNFIDVAVRRLRSKIDEGYEPK-LIHTIRGLGY 222 >gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 240 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ALA + L+ E + V GE+ + + + D ++LD L + G E+ Sbjct: 14 VLVVEDEAALATMLRYNLEKEGYRVAEAADGEEALTVLAERKPDLVLLDWMLPSLSGIEI 73 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R +R A P+ +L+ DK+RGL +GADDY++KPF+ EL+AR+RA++RR++ Sbjct: 74 CRQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLRRAQ 133 Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +Q I GD+S++L + V G IHL E+++++ T ++E L+ ++ Sbjct: 134 PVSQKGQISWGDVSMDLASHRVVRAGKAIHLGPTEFRLLQFFLQHPGTVFSREELLDAVW 193 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV I +LRK L N + I TV GY L Sbjct: 194 GPDIYVEPRTVDVHIRRLRKAL-NCDTEADIIRTVRAAGYAL 234 >gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family [Methylocella silvestris BL2] gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family [Methylocella silvestris BL2] Length = 265 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPGF 60 RIL++ED+ AL+ + L++E F V + G++ I L + D +ILD L + G Sbjct: 29 RILIVEDEAALSMLLAYNLEAEGFVVDRVERGDEAEIRLSETMP-DLVILDWMLPGVSGL 87 Query: 61 EVLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 E+ R +R A S PV +L+ ++VRGL GADDY+ KPF+ EL+AR+R+++RR Sbjct: 88 EICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVRSLLRR 147 Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +R +++ GDL ++ V G +HL E++++E L R ++ L+ Sbjct: 148 ARPDRVAAVLSAGDLELDRQNWRVRRTGRDVHLGPTEFRLLEHLMERPGRVFSRAQLLDS 207 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ E + + +DV + +LRK L+ A G ++ I TV G GY E Sbjct: 208 VWGLSAEIDERTVDVHVGRLRKALT-APGERDPIRTVRGAGYSFDET 253 >gi|330447755|ref|ZP_08311403.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491946|dbj|GAA05900.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 231 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+IED+ + ++++ ++V + ++G++ + ++LDLGL D G Sbjct: 5 IKILVIEDEAPIRRFLDILTTGHGYSVKTVETAQEGLKQIVSWSPHLVLLDLGLPDADGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR TP+ ++S DKV+ L +GA+DY++KPF EEL+ARIR +R Sbjct: 65 DFTKELRTWT-ETPIIVISARDKEADKVQALDAGANDYLTKPFGSEELLARIRVALRLHS 123 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S ++ GD+ ++L +TV G I LT KEY+++ LL+ LT + L Sbjct: 124 HNTASDVIQYRFGDVVLDLAMQTVTHHGESIKLTPKEYKILTLLAKNMGKVLTHKQILKE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ G + + I +LR K+ ++ YI T G GY L Sbjct: 184 VWGGNYTEHAHYVRIHIAQLRHKIESSPAQPKYIITENGVGYRL 227 >gi|116255578|ref|YP_771411.1| putative Kdp operon transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260226|emb|CAK03330.1| putative Kdp operon transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 230 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ + + + L ++ + V + D I+LDLGL D PG Sbjct: 6 VKILVVDDEPPIRKLLRVGLTAQGYEVQEAPNASAARQSVTDDMPDLIVLDLGLPDTPGH 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++L+ R +S PV ILS + V+ L+SGADDY++KPF EL ARIR +R Sbjct: 66 DLLQEWRDEGLSMPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRL 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ TG LS++L + V+V G+ I L+ KEY ++ +L+ LT + L + Sbjct: 126 QQQGEKAIFQTGGLSIDLVKRIVKVDGNEIKLSPKEYDILRVLAQHAGKVLTHQFLLKQI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +V+ + V++ +LR+K+ +YI T G GY LRE Sbjct: 186 WG--PAADVQYLRVYVRQLRQKVEQIPDQPHYITTETGVGYRLRE 228 >gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 229 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 12/229 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTD 56 +IL+ +D+ + I L LK ENF V EDG++ E F ++D+ + + Sbjct: 7 KILVADDEPKMRELIALYLKRENFEVTAV---EDGMKALAELEEKGDVFSLFMIDVMMPN 63 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + GF + R +R PV ++ +++ G + GADDYI KPF+ E+ AR++A++ Sbjct: 64 MDGFALCREIRSFS-DKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVL 122 Query: 117 RRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +R+ + LI TG + +N++ + V V G +I+LT KE+ ++ L K L++E Sbjct: 123 KRANPVQGEELIHTGQIKINVEGREVSVGGEQINLTPKEFDLLVFLINNKGKVLSREHIT 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++D + + +D I KLR+KL AG N I+T+WG GY N Sbjct: 183 RKVWDYDYFGDQRTVDTHIKKLREKLGEKAG--NEIKTIWGVGYKFEVN 229 >gi|254447845|ref|ZP_05061310.1| two component transcriptional regulator, winged helix family [gamma proteobacterium HTCC5015] gi|198262625|gb|EDY86905.1| two component transcriptional regulator, winged helix family [gamma proteobacterium HTCC5015] Length = 233 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 10/226 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+L++DD L +E L E FN+ V + E +EL DA++LD+ + + G +V Sbjct: 7 IVLVDDDAELTELLEEFLVGEGFNIQVINDPEQALEL-NLERVDALVLDIMMPKLSGLDV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 L++LR + TP+ +L+G D++ GL+ GADDY+ KP N EL AR+RA++RR Sbjct: 66 LQSLR-SHSDTPIIMLTGRGDDIDRIIGLEMGADDYMGKPCNPRELSARLRAVLRRAQMT 124 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ +A++L + G + VN + +G + LT E+ ++ELL ++KE Sbjct: 125 ADSSQQNAETLQLHG-IEVNRGQRDARFEGESLGLTSAEFSVLELLMRSSGEIVSKETLT 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + P + IDV + ++R+KLS G ++ I+T GRGY++ Sbjct: 184 EKVLQRPLMPYDRSIDVHVSRVRQKLSKYLGDQDIIKTARGRGYMM 229 >gi|146307260|ref|YP_001187725.1| two component heavy metal response transcriptional regulator [Pseudomonas mendocina ymp] gi|330503403|ref|YP_004380272.1| two component heavy metal response transcriptional regulator [Pseudomonas mendocina NK-01] gi|145575461|gb|ABP84993.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] gi|328917689|gb|AEB58520.1| two component heavy metal response transcriptional regulator [Pseudomonas mendocina NK-01] Length = 225 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L FNV G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGTYLQQGLTEAGFNVDRVMTGTDALQHALSEAYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR A PV L+ +ED+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 EVLRMLRAAGKDVPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGN 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q+ + DL V+L + G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 GSPTQTTMKIADLEVDLMKRRAIRGGKRIDLTAKEFSLLELLLRRRGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V + +LR K+ + K I T G GY++ Sbjct: 181 DMNFDSDTNVIEVAVRRLRAKIDDDFDLK-LIHTARGMGYMM 221 >gi|331005376|ref|ZP_08328760.1| putative two-component response regulator transcription regulator protein [gamma proteobacterium IMCC1989] gi|330420830|gb|EGG95112.1| putative two-component response regulator transcription regulator protein [gamma proteobacterium IMCC1989] Length = 236 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 130/237 (54%), Gaps = 21/237 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-------ELCKFYEFDA----II 49 M+IL+IEDD + ++ LK+E Y T+L EDG EL K + +A +I Sbjct: 1 MKILVIEDDPRVHGFLQRGLKAEG---YQTELAEDGATGLGLARELHKAFRDNAEKSLVI 57 Query: 50 LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109 LD+ + ++ G EV + LR P+ +L+ ++ +D+V GL++GADDY+ KPF+ EEL+ Sbjct: 58 LDIMMPEMNGLEVCQQLRAEGFPLPILMLTALNDTDDRVTGLRTGADDYLGKPFDFEELL 117 Query: 110 ARIRAIVRRS-----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164 ARI + RR + A+ L V DL ++LD+ V I LT KE ++EL+ Sbjct: 118 ARIEGLARRGLVAPDKQRAKQLSVA-DLHLDLDSMRVFRGDEEISLTAKELALLELMMRS 176 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++E L++++ ++P I+DV+I +LR K+ + I T G GY L Sbjct: 177 VGRLFSRERILSNVWGLNEDPLTNIVDVYIRRLRNKI-DTDNKPQLIHTQRGLGYRL 232 >gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 235 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 130/229 (56%), Gaps = 7/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ L+ E + V+VT G+ ++ + + D ++LDL L +I G + Sbjct: 5 KILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEEDIDLLVLDLMLPEIGGLD 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R +R P+ +L+ D++ GL+ GADDY++KPF+ ELVAR++AI+RR+ Sbjct: 65 ICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAILRRT 124 Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I G++ ++L+ V + +++ T KE++++ LL+ LT+ L Sbjct: 125 GSSGQKTDEDCIKLGEIVIDLNKYEVLLDDKQVNFTPKEFELLMLLAKNAGKVLTRNFLL 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRE 223 ++ + + +DV I + R+KL+N A YIETV G GY +E Sbjct: 185 KEIWGYGYNGDTRTVDVHIRRTRQKLNNNLAEDVEYIETVRGVGYRFKE 233 >gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family protein [Bacillus pseudofirmus OF4] Length = 231 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 13/228 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ + + L L E F D GE+ I L ++ D ++D+ + + GF+ Sbjct: 4 ILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDGFDF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ LR + PV L+ S +D++ GL G DDY+SKPF+K EL+ARI+A++RR+ Sbjct: 64 VKKLRETS-TLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTYQR 122 Query: 123 AQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +++I D + +N A++V+V I LT KE+ ++ L + T+E Sbjct: 123 NRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ E + +D I LR KL N I+TVWG GY L Sbjct: 183 LLTSVWGLDYEGTERTVDTHIKTLRMKLKPYG---NVIQTVWGIGYKL 227 >gi|239942982|ref|ZP_04694919.1| two component transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239989442|ref|ZP_04710106.1| two component transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 236 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + L+ E F V G + + + I++D+ L D G Sbjct: 2 LRVLVVDDESYLADLVATALRYEGFETAVAGTGGAAVAQVETFRPHLIVMDVMLPDGSGI 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR + PV L+ + EDK+ GL G DDY++KPF+ EEL+ARIRA++RR+ Sbjct: 62 DATRRLRGSGCLAPVVFLTARDATEDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRRTA 121 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ VT DL ++ DA V G + LT E++++ L L+K L+H++ Sbjct: 122 HPAERAKVTFADLEIDDDAHEVRRHGVPVDLTPTEFKLLRYLVAHAGRVLSKRQILDHVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ +I LR+K+ + I+TV GYV+R Sbjct: 182 EYDFGGSDAVVQTYISYLRRKIDVFE--PSLIQTVPRIGYVVR 222 >gi|227114540|ref|ZP_03828196.1| two-component system response regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 226 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL++DD L + L +E F+ G++G++ ++ A+ILD+ L D+ G Sbjct: 1 MNILLVDDDVELGDMLCEYLNAEGFSTSRVLTGKEGVDGAISGDYTAMILDVMLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +VLR +R + PV +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 61 DVLRQIRKTQ-QLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +SL +GDL +N + E +G LT E+ ++ELL ++K+ Sbjct: 120 DQPSTKRDESLAASGDLVLNPATRISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELS 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R E + +DV I +R+KL G IETV GY +R Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLGALPGNTMTIETVRSVGYRIR 226 >gi|224080365|ref|XP_002335626.1| predicted protein [Populus trichocarpa] gi|222834447|gb|EEE72924.1| predicted protein [Populus trichocarpa] Length = 175 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/174 (41%), Positives = 105/174 (60%), Gaps = 6/174 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MRIL++ED + LA ++ L+SE Y D DG+ KF Y +DAIILDL L + Sbjct: 1 MRILIVEDSQTLAEALSQSLQSEG---YACDTAADGVSALKFLASYRYDAIILDLMLPRL 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VLRAL + PV +LS ++D+VR L +GADDY++KPF EL+AR+RA+VR Sbjct: 58 DGFGVLRALSREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 R ++ GDL V+ ++ + + LT KEY +++LL R+ TL++ Sbjct: 118 RPPQRDVPVLRHGDLEVDPRSRIARFKCIDLGLTPKEYGLLDLLLRRRGATLSR 171 >gi|197117730|ref|YP_002138157.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087090|gb|ACH38361.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 234 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ LA I L+ E + V + GE+ +E K +FD IILD+ L I GFE Sbjct: 7 QILLVEDEMHLARGITFNLEQEGYLVSHVESGEEALEKVKVEKFDLIILDVMLPGIGGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R PV +L+ S+ D++ GL +GADDY+ KPFN +E + R+ ++RRS Sbjct: 67 VCERIRTLDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRRSAW 126 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + GD V L + + I LT E +M+ L R+ + + + L Sbjct: 127 YRPEPVEEGYRFGDNEVFLLSYRARTRQGEIDLTDLEVRMLSLFFHREGEAIPRGVILES 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + E + +D FI +LRK + +TV G GY N Sbjct: 187 VWGYSTDAETRTLDNFIVRLRKYFEPEPSRPIFFQTVRGVGYRFSRNP 234 >gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family protein [Paulinella chromatophora] gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family protein [Paulinella chromatophora] Length = 268 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + L+ + V + GE+ + + + D I+LD+ L + GF V Sbjct: 26 VLIVDDEPAVRRVLVTRLQLVGYRVICAEDGEEALTIFHQDQPDLIVLDVMLPKLDGFAV 85 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR RG Sbjct: 86 CRRLR-AESCVPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A Q ++ GDL V+ + + V G+RI LT E+ ++ELL + + Sbjct: 145 SATAEPCDIPAGQGVLRVGDLVVDTNRRQVTRGGNRIALTYTEFSLLELLFREPGRVVPR 204 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254 >gi|108758444|ref|YP_631647.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK 1622] gi|108462324|gb|ABF87509.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK 1622] Length = 226 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ +A+ + L E V ED ++ +DAIILD L + G Sbjct: 1 MRLLLVEDEERMANLLRRGLGEEGHLVDTCRTAEDALDQAGEVAYDAIILDWALPGMDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR R + TPV +L+ ++ ++V GL++GADDY+ KPF EEL+AR+ A+ RRS Sbjct: 61 ALLRRWRERGLMTPVLMLTARGTVGERVTGLRAGADDYLVKPFAFEELLARLEALHRRSE 120 Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G QS G ++++DA + + + LTG+E+ ++ L+ R T+ L + Sbjct: 121 GQTQSW---GGGAIHIDARRRMLTCGDREVALTGREFALLGELASRAGEVHTRSSLLAKV 177 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + I+DV++ +R KL+ I+ V G G+ L Sbjct: 178 WGPSFDGPPNIVDVYVGYVRTKLTEVGAEGVTIQAVRGVGFRL 220 >gi|158320237|ref|YP_001512744.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140436|gb|ABW18748.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 224 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 120/217 (55%), Gaps = 2/217 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDDK L +E LK EN+NV G + + + + D II D+ + + G+E Sbjct: 4 ILVIEDDKNLRRLMEAFLKRENYNVLSAKDGLEALNVLDSFHVDLIISDIMMPHMDGYEF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR + I+ P+ +++ +IEDK RG G DDY+ KP N +E++ R+ A++RRS Sbjct: 64 TEQLRKSNINVPILMVTAKETIEDKKRGFSVGTDDYMVKPINLDEMLLRVAALLRRSNIV 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + +V G+++++ + TV +G I L KE+ ++ L T++ ++ ++ Sbjct: 124 NEHRMVIGEVALDYNTLTVSKKGESIVLPKKEFYLLFKLLSHPKQIFTRQQLMDEIWGMD 183 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + + +DV I +LR+K + + + I TV G GY Sbjct: 184 AETDERTVDVHIKRLREKFGDFSEFE--IITVRGLGY 218 >gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 232 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + + L+ E + ++ + G++ +E+ K + I+LD+ L + G++ Sbjct: 5 KILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIAKEKKPTLILLDVMLPQMDGYD 64 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R + +TP+ +++ DKV GL+ GADDYI+KPF+ EL+ARI+A++RR+ Sbjct: 65 VCKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAVLRRT 124 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + G L ++ + V G ++ LT KE+Q++E+L K LT+E L+ Sbjct: 125 LLKSTEEPFKFEG-LKMDFEKHEVMKDGEKVDLTLKEFQLLEILIKNKGRVLTREYLLDK 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + +DV I LR+K+ + YIET+ G GY Sbjct: 184 IWGYEYIGETRTVDVHIRHLRQKVEDDDKNPKYIETIRGVGY 225 >gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 224 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E K+ E D +ILD+ L D G Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREAVE--KWNEGPDVLILDVMLPDTDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRV 119 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G+L + + V V G I LT +E+ + +L ++ L Sbjct: 120 KKEEVTVSHEVIRAGELIICPKERKVHVGGEEIQLTYREFNLCQLFVSNPQRVFMRDELL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|255281501|ref|ZP_05346056.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] gi|255267989|gb|EET61194.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] Length = 229 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ EDD + H I + + G + + + FD IILDL L + G E Sbjct: 3 KILISEDDADINHLIRSICEKNGLQTAQAFSGTEALLRLELESFDMIILDLMLPGMTGEE 62 Query: 62 VLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R K PV +LS SS+ DKV+ L GADDY++KPF EEL+ARI A +RR++ Sbjct: 63 LLKRIRAEKQPDIPVLVLSAKSSLADKVQLLTGGADDYMTKPFEPEELLARITACLRRAQ 122 Query: 121 GHAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + D+S + A+ V G + LT EY ++ LL+ ++E Sbjct: 123 RMPAAKPAADDISYKKLCICPAARRATVNGQELVLTPHEYDILLLLARELEKVFSRETLY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ G E ++V + LRKK++ YI+TVWG G+ Sbjct: 183 ERVWQGGYYGEDNTVNVHVSNLRKKIAACDADNEYIKTVWGIGF 226 >gi|89894512|ref|YP_517999.1| hypothetical protein DSY1766 [Desulfitobacterium hafniense Y51] gi|219668942|ref|YP_002459377.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333960|dbj|BAE83555.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539202|gb|ACL20941.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 12/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD ++A L+ F+V ++ G +G+ + EFD IILD+ L + G E Sbjct: 3 RILIVEDDSSIAELERDYLEVAGFDVTLSTDGVEGLRAIQNNEFDLIILDIMLPGLDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 +L++++ K PV ++S DK++GL GADDYI+KPF+ ELVAR++A + Sbjct: 63 ILKSMKEDK-DIPVLLVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKAHIENYER 121 Query: 118 -RSRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + R +A QS+ + G L + D++ V V ++L KE+ ++ L+ N + Sbjct: 122 LKERFNAGIKKRQSITIRG-LKIEKDSRRVFVNHQEVNLAQKEFDLLLYLAQNPNRVFGR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E ++ + + V I ++R+K YIETVWG GY R Sbjct: 181 EELFERIWGLESLGDSATVTVHIARIREKTEIDPSKPQYIETVWGAGYRFR 231 >gi|240146794|ref|ZP_04745395.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257201080|gb|EEU99364.1| regulatory protein VanR [Roseburia intestinalis L1-82] Length = 237 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 123/231 (53%), Gaps = 14/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ +A IE+ L++EN+ VY + + +E + + D ILD+ L DI GF+ Sbjct: 4 KVLVVDDESEIADLIEMYLQNENYTVYKSYTAQSALEYIESEKLDLAILDVMLPDIDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R K + PV +L+ D + GL GADDY++KPF L+AR++A +RR Sbjct: 64 ICKKIR-EKYTYPVIMLTAKDGEVDTITGLTLGADDYVTKPFKPLALMARVKAQLRRYKK 122 Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN-TT 168 S G + + L +N+ A V G + LT E+++++ L +K Sbjct: 123 YNSFSEPMDSEGKETIITTSNGLVMNISAHVCIVDGTSVELTPTEFKILQTLCEKKGLAV 182 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++E+F + D + I V I LR+K+ + YI+T+WG GY Sbjct: 183 MSEELFRSVWPDEFYDKNSNTITVHIRHLREKMGDTTEEPRYIKTIWGVGY 233 >gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Clostridium botulinum H04402 065] Length = 232 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 131/223 (58%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ ++N G + + + K + D I+LDL L + G+E Sbjct: 5 KILIVDDEEHICELIKFNLENNSYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R +TP+ +++ DKV GL+ GADDYI+KPF+ E+VAR++A++RR Sbjct: 65 VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124 Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++S I+ G++ V+ + ++ G +I LT KE++++E+L K +T++ L+ Sbjct: 125 TTINIESKSYIL-GNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + +DV I LRKK+ + +IET+ G GY Sbjct: 184 RIWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGY 226 >gi|299069814|emb|CBJ41094.1| DNA-binding response regulator in two-component system [Ralstonia solanacearum CMR15] Length = 226 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+IEDD ++ + L++E + V + G +G++L + E ++LDL L + G Sbjct: 1 MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARGGEPALLLLDLMLPGMSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR + P+ +L+ ++ I+D+V GL+ GADDY++KPF EEL+ARI A++RR R Sbjct: 61 ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V DL ++ + V G I LT KE +ELL ++E L+++ Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRERILSNV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ++P I+DV++ +LR K+ ++TV G GY L Sbjct: 181 WGANEDPLTNIVDVYVRRLRSKIDEGQ-PVPLLKTVRGLGYRL 222 >gi|332186443|ref|ZP_08388187.1| response regulator [Sphingomonas sp. S17] gi|332013426|gb|EGI55487.1| response regulator [Sphingomonas sp. S17] Length = 226 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + ++L+EDD+ A + L V G + +FDA+ILD + + G Sbjct: 3 LHLILVEDDRDYAAGLADDLTRLGHRVEHVGDGRQALAALDREQFDAVILDRMMPRLDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ LR ++ PV +L+ +S DKV GL++GADDY+ KP EEL ARI A++R R Sbjct: 63 SVVETLRERGLTVPVIMLTALSMASDKVDGLEAGADDYVVKPVAAEELNARINAVLRGRR 122 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + + I GD+ V+ + G I L E +++ L+ LT+ M + Sbjct: 123 WTVGESDT-IRAGDIVVSPTSFRAWRAGQPIALANLELKLLTELARHAGEVLTRAMLIER 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ EPE ++DV+I +LR KL+ AGG + IETV G GY L+ Sbjct: 182 VWGYEFEPETNVVDVYIRRLRVKLTE-AGGSDPIETVRGIGYSLK 225 >gi|304392945|ref|ZP_07374876.1| response regulator MprA [Ahrensia sp. R2A130] gi|303294943|gb|EFL89312.1| response regulator MprA [Ahrensia sp. R2A130] Length = 229 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++EDD A ++ M + V D E I + + + I+LD L G Sbjct: 1 MTILIVEDDSVTAQAMAEMAEELGHEAVVVDSFEACISAVEQHAPELILLDRMLPSGDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR+ V ++S + ++V GL+ GADDY++KPF+ EL AR++A++RR+ Sbjct: 61 DAIAKLRLKGAGCLVMVVSALGRASNRVEGLEKGADDYLAKPFDPLELRARMKALLRRNA 120 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + LIV DL + L A+TV G I ++ KE+++I + N +T++M L H+ Sbjct: 121 VQSTDNDLIVFHDLEIRLKARTVHRAGCHIAVSPKEFELICYFASNANEAVTRKMLLEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +P+ ++DV + +LR+KL G I T+ G GY+ Sbjct: 181 WKLNFDPQTNVVDVHVGRLRRKL-EFDGLPPLIHTIRGEGYLF 222 >gi|289623884|ref|ZP_06456838.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869831|gb|EGH04540.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 224 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR +ST V +++ +E+KV+GL+ GADDY+ +PF EL+AR+R ++RRS Sbjct: 61 EVLSRLR-KTVSTRVMMVTARGRLEEKVKGLELGADDYLVEPFEFPELLARVRTLMRRSE 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220 >gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293] gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293] Length = 242 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ EL+AR++A +RR Sbjct: 76 CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDLSVNL-------DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 135 NQNAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238 >gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1] gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1] gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 225 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 127/222 (57%), Gaps = 9/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 ++IL+++D+ + ++ L + F V GE+ I++ F+E I+LD+ + + Sbjct: 4 LKILVVDDEPRMRKLVKDFLTVKGFQVVEAGDGEEAIDI--FFEQKDIALILLDVMMPKM 61 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+EVL+ +R P+ +L+ +D+++G + G D+YISKPF+ + LVAR+ AI+R Sbjct: 62 DGWEVLKTIRKYS-QVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS A+ +I G + ++ A VE+ G + L+ KE++++ + + L++E LN+ Sbjct: 121 RSSPGAKDVIDVGGIHIDKTAHQVEIDGKPVDLSYKEFELMTYFAENQGIALSREKILNN 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + + ID + KLR KL YI+T+WG GY Sbjct: 181 VWNYDYFGDARTIDTHVKKLRSKLGEKG---EYIKTIWGMGY 219 >gi|254524029|ref|ZP_05136084.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp. SKA14] gi|219721620|gb|EED40145.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp. SKA14] Length = 237 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D+ + +++ L+++ + V G++G++L + D +ILD+GL D+ G E Sbjct: 14 RVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDMDLVILDIGLPDMEGHE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120 VL LR PV +L+ + +KVR L +GA+DY++KPF +EL+AR+RA++R RS Sbjct: 74 VLEQLRQWS-QVPVIMLTVRAGEAEKVRALDTGANDYVTKPFGTQELMARVRALLRTRSV 132 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V G L V+L + V + G + LT KEY ++ LL +T+ L + Sbjct: 133 PSDGTPPVFDDGHLHVDLVRREVALDGEPVALTRKEYALLSLLLRNAGRVVTQPQILQEI 192 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218 + + + + + + KLR KL ++A Y+ T G G Sbjct: 193 WGPTHQQDTHYLRILVGKLRHKLGDSALDSRYLFTEPGVG 232 >gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacterales bacterium HTCC2083] gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium HTCC2083] Length = 227 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 128/223 (57%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ A + L++E + V + G++G+ L + D I+LD L ++ G EV Sbjct: 6 ILVVEDEAAQREVLSYNLEAEGYRVLQGESGDEGLLLARENVPDLIVLDWMLPEMSGIEV 65 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R ++ + P+ +LS S DKVRGL++GADDY++KP++ +EL+AR++A +RR+R Sbjct: 66 CRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLRRTR 125 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + + D+ +N + V G + L EY+++ L + +E L+H++ Sbjct: 126 PAALGAQLDFEDIVLNGETHKVTRAGVELKLGPTEYRLLSQLMEKPGRVWPREQLLDHVW 185 Query: 180 DGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 GRD + + +DV + +LRK L+ A GG + I T+ G GY Sbjct: 186 -GRDAFVDTRTVDVHVGRLRKALT-AEGGSDPIRTIRGTGYAF 226 >gi|187934340|ref|YP_001885676.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722493|gb|ACD23714.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 230 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 124/224 (55%), Gaps = 9/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + + +E+ LK+E ++V+ GE+ +++ + E ++LD+ + D+ GFEV Sbjct: 5 ILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +R + + P+ +LS DK++G+ +GADDY+ KPFN EL RIRA+ RR+ Sbjct: 65 CSKVR-ERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYFL 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRI-------HLTGKEYQMIELLSLRKNTTLTKEMFL 175 + V+ D+ + +++ ++ H+I LT +E++++ LL+ + + E Sbjct: 124 NTKIQVSDDI-IRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEIF 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V + +LR KL G I TVWG GY Sbjct: 183 EKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGY 226 >gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 234 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 65/226 (28%), Positives = 122/226 (53%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L+++D+ + + + LK + F+VY + G + + + + DA I+D+ + + GF Sbjct: 7 VKVLVVDDEPNIVELLTVSLKFQGFDVYSANSGNEALRIAREINPDAYIMDVMMPGMDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L LR + PV L+ S++ ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 67 ELLGKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGN 126 Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + DL++N D V G + L+ E+ ++ L + L+K L+ Sbjct: 127 AVDDQDGSATMTYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMQNREVVLSKSKILD 186 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 187 NVWHYDFGGDGNVVESYISYLRRKID--TGDTPLIHTVRGVGYVLR 230 >gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ L +E +NV+ GE+ +E+ + E + ++LD+ + D+ G EV Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R K S P+ +LS D++ G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CKRAR-QKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFL 123 Query: 123 AQSLIVTGDL----SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ ++ S+ +D K V + + I LT +E++++ LL+ + + E Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V + +LR K+ G I TVWG GY Sbjct: 184 KVWKERYFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGY 226 >gi|167755206|ref|ZP_02427333.1| hypothetical protein CLORAM_00711 [Clostridium ramosum DSM 1402] gi|237734955|ref|ZP_04565436.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167705256|gb|EDS19835.1| hypothetical protein CLORAM_00711 [Clostridium ramosum DSM 1402] gi|229381731|gb|EEO31822.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 236 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 120/222 (54%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+A+ + L + ++ G+ + + I+LDLGL D+ G E+ Sbjct: 6 ILVVEDDRAVRSLVTTTLDTHDYKYITAQNGQQALLEIVSRRPNIILLDLGLPDMDGIEI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 ++ +R I P+ ++S S + K+ L +GADDY++KPF+ +EL+AR+RA +RR + Sbjct: 66 IKKVRSWSI-VPIIVISARSEDKSKIEALDTGADDYLTKPFSIDELLARLRATMRRLKYL 124 Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H + + GDL VN D+ + +HLT EY+++ LL+ + LT L Sbjct: 125 EHQEIEDVVFTNGDLKVNFDSGCAYLNDQELHLTPIEYKLLCLLAKNIDKVLTHNYILKE 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +V + VF+ LRKK+ + YI+T G GY Sbjct: 185 VWGDVIQSDVPSLRVFMATLRKKIESDTTNPKYIQTHVGVGY 226 >gi|166033420|ref|ZP_02236249.1| hypothetical protein DORFOR_03146 [Dorea formicigenerans ATCC 27755] gi|166026605|gb|EDR45362.1| hypothetical protein DORFOR_03146 [Dorea formicigenerans ATCC 27755] Length = 228 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED+K + +I L + V GE+ +E +D ++LDL L + G Sbjct: 3 LRLLIVEDEKQICDAIAKSLYDAGYEVDTCYDGEEALECILTENYDLVVLDLNLPGMDGM 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR + T V ILS I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR Sbjct: 63 EILKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +GD+ + + + +I LT KE ++E L L +++E + H++D Sbjct: 123 VQKDVCLESGDIKFDTIKREAYAKEIKISLTRKEKGILEYLLLNLGRPVSQEELMEHVWD 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I V + LR+KL A G + I G GY +RE + Sbjct: 183 ASVDSFSGAIRVHMSSLRRKL-KAVLGHDVIMNKVGEGYKIREES 226 >gi|148379025|ref|YP_001253566.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153933944|ref|YP_001383407.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937242|ref|YP_001386955.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|170757255|ref|YP_001780669.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|170760535|ref|YP_001786430.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226948311|ref|YP_002803402.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|148288509|emb|CAL82588.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152929988|gb|ABS35488.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933156|gb|ABS38655.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|169122467|gb|ACA46303.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169407524|gb|ACA55935.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226841225|gb|ACO83891.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 228 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 12/224 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G + IE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 R +R + + +L+ ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR + Sbjct: 64 CRIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 +LI G L ++ D + V+V G + +T E+ ++ L K L++E +N + Sbjct: 123 NSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++G D + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFNGYD----RTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222 >gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 230 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ L +E +NV+ GE+ +E+ + E + ++LD+ + D+ G EV Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R K S P+ +LS D++ G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CKRAR-EKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123 Query: 123 AQSLIVTGDL----SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ ++ S+ +D K V + + I LT +E++++ LL+ + + E Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V + +LR K+ G I TVWG GY Sbjct: 184 KVWKERYFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGY 226 >gi|71279233|ref|YP_269868.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71144973|gb|AAZ25446.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 238 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 126/232 (54%), Gaps = 13/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD+ L+ + L SE F+V G+ + K + D IILD+ L GF Sbjct: 10 KILLVEDDRQLSDLVTDFLTSEGFHVKQEFRGDTVAKRVKLFSPDLIILDVMLPGKDGFG 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + PV +L+ S+ D+V GL+ GADDY+ KP L+AR+ A++RR Sbjct: 70 VCRDLR-PEFNGPVLMLTAKSTDFDQVLGLEIGADDYVIKPVEPRVLLARVNALLRRGDL 128 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR----KNTTLTKEM 173 QS I G L +N ++ V +Q + LT +E+ ++ LL+ + +N + Sbjct: 129 PNQSEEKGEITCGGLYINKASRKVTLQDENVDLTSQEFDLLWLLAGKAGEVQNRDYIYKA 188 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + YDG D + +DV I +LRKKL ++ I+T+WG+GY+ +A Sbjct: 189 VIGREYDGLD----RSVDVRISRLRKKLHDSTDTPFRIKTIWGQGYLFVPDA 236 >gi|298244000|ref|ZP_06967807.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297557054|gb|EFH90918.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 240 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 127/228 (55%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ + + + L+ E++ V G + ++ + + D ++LD+ + ++ GF Sbjct: 11 MTILIVDDEPRIRDFVRMNLEMEHYRVIEASNGLEALDRLREHLPDLVVLDVMMPEMDGF 70 Query: 61 EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 E L+A+R ++ST PV +L+ S +DK+RGL GADDYI+KPF+ EL++RIRA++RRS Sbjct: 71 ETLKAIR--EVSTVPVVMLTVRQSEQDKIRGLDLGADDYIAKPFSPPELLSRIRALLRRS 128 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++V DL ++ + V V+G ++ L EY+++ L +T E L Sbjct: 129 LMSPPARKTEIVVDEDLQIDFARREVMVRGKKVVLRPTEYRLLYHLVSNAGRLMTHETLL 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ E + ++I LR+KL YI T G GY +E Sbjct: 189 SKVWGREYRDEAHYLRLYITYLRQKLEEDPAHPKYILTERGIGYRFKE 236 >gi|291532494|emb|CBL05607.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Megamonas hypermegale ART12/1] Length = 232 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD A+ + I LK +N+ +V G + + D ++LDLGL D+ G E+ Sbjct: 6 ILIVEDDAAVRNLISTTLKMQNYKFHVATTGSQALLEAVSNQPDIMLLDLGLPDMDGVEI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + +R + + P+ ++S DK+ L +GADDYI+KPF+ EE +AR+R +RR Sbjct: 66 ITKVR-SWSNMPIIVISARCEDRDKIEALDAGADDYITKPFSVEEFLARLRVTIRRINYV 124 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + S+ V G+L ++ + +G +HLT EY+++ LL+ LT Sbjct: 125 QTPHKENSIFVNGELKIDYVSGCAYCRGKELHLTPIEYKLLCLLAKNIGKVLTHTYITRE 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + V + VF+ LRKK+ YI+T G GY Sbjct: 185 VWGNAWDNNVASLRVFMATLRKKIEIDTANPEYIQTHIGIGY 226 >gi|228924304|ref|ZP_04087554.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835330|gb|EEM80721.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 231 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D G Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNALDLAILDIMLPDASGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 123 YNGVTAQNENVIVHAGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ D I V I LR+K+++ A YI+TVWG GY Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDMADNPKYIKTVWGIGY 227 >gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 223 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V I LT +E+ + +L ++ L Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|34496048|ref|NP_900263.1| two-component system response regulator [Chromobacterium violaceum ATCC 12472] gi|34101902|gb|AAQ58269.1| probable two-component system response regulator [Chromobacterium violaceum ATCC 12472] Length = 218 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 5/219 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+IEDD L +++ LK+E D L + FD ++LDL L D G Sbjct: 1 MHLLIIEDDLDLGRALQAALKAEAATTEWARKLADADALFEPDRFDCVLLDLSLPDGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LRA R +I+ PV +++ + + DK+ GL GADDY+ KPF E+V+R+RA+ RRS Sbjct: 61 ELLRAWRARQITVPVIMITASADLSDKLAGLDDGADDYLCKPFAVSEMVSRVRAVCRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + G LS+ A + G + L+ +E++++ L+ + ++K + L Sbjct: 121 RQASEIWSLGALSLKPSAHLAWLDGSALDLSPREFRLLVELARDPSRIVSKTLLGQRLEP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D + I+V + LR+K+ G I TV G GY Sbjct: 181 LGDVVDGATIEVHLSNLRRKI-----GAERIRTVRGVGY 214 >gi|114331551|ref|YP_747773.1| two component transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114308565|gb|ABI59808.1| two component transcriptional regulator, winged helix family [Nitrosomonas eutropha C91] Length = 223 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 7/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD +A I+ L + + V V + + FD +++D+GL D+ G Sbjct: 1 MRILVVEDDSLVASGIKQGLINAGYTVDVANTAGSAEIHLRDENFDLVVVDIGLPDMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR ++ PV +L+ S+ED + GL GADDY+ KPF EL ARIRA++RR+ Sbjct: 61 MLVQRLRNRQMRLPVLVLTARGSMEDTIAGLDVGADDYMVKPFRLPELAARIRALIRRAH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178 A + + L +N + T + G + LT +E+ ++E+L + ++K+ L L Sbjct: 121 SVASTELRHDQLILNTGSHTATLHGQPLFLTMREWTILEILLMASPKVVSKDKLLQSLAG 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +D P I+V + +LR K+ A GG I TV G GY Sbjct: 181 WDKNITPNA--IEVHVSRLRAKI--ALGGIG-IRTVRGIGY 216 >gi|291535476|emb|CBL08588.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 224 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59 +IL+++DDK L ++++ N Y T DG+E + D I+LD+ + + G Sbjct: 4 KILVVDDDKEL---VKMLCSYFNMKQYETITATDGMEALNKIKMKPDIILLDINMPRMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R +K+ P+ L+ +DK+ GL SG DDYI+KPF+ EL ARI ++R Sbjct: 61 IEVCRLIR-SKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKRE 119 Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H Q ++ ++ K V + GHR+ T EYQ+IE LS+ KE Sbjct: 120 ERHQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYAQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + I + ++RKK+++ + K YIETVWG GY Sbjct: 180 VCGYDAEGDSRTITELVRRIRKKIADYS-EKEYIETVWGIGY 220 >gi|109453282|gb|ABG34121.1| PhoP [Salmonella enterica subsp. salamae] Length = 213 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLQDSGHQV---DAPEDAREADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGADDY++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214 LY + E IDV + +LRKK+ A + I TV Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213 >gi|53721033|ref|YP_110019.1| putative two-component response regulator [Burkholderia pseudomallei K96243] gi|53723986|ref|YP_104431.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|67643062|ref|ZP_00441811.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|76812001|ref|YP_331624.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|83718982|ref|YP_443831.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|121598557|ref|YP_994665.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124383773|ref|YP_001027599.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126438840|ref|YP_001060997.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126449609|ref|YP_001082503.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126453172|ref|YP_001068297.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134281503|ref|ZP_01768211.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|167001286|ref|ZP_02267085.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|167564650|ref|ZP_02357566.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] gi|167571791|ref|ZP_02364665.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] gi|167582868|ref|ZP_02375742.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] gi|167621009|ref|ZP_02389640.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|167721860|ref|ZP_02405096.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167740829|ref|ZP_02413603.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167818044|ref|ZP_02449724.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167826409|ref|ZP_02457880.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167838457|ref|ZP_02465316.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] gi|167847925|ref|ZP_02473433.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167896484|ref|ZP_02483886.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167904883|ref|ZP_02492088.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167913163|ref|ZP_02500254.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167921101|ref|ZP_02508192.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|217424117|ref|ZP_03455617.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|226193064|ref|ZP_03788674.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237814384|ref|YP_002898835.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242315780|ref|ZP_04814796.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254174982|ref|ZP_04881643.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254184057|ref|ZP_04890648.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254186523|ref|ZP_04893040.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254194795|ref|ZP_04901226.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254201504|ref|ZP_04907868.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254206843|ref|ZP_04913194.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254260172|ref|ZP_04951226.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254298671|ref|ZP_04966122.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|254357398|ref|ZP_04973672.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|52211447|emb|CAH37438.1| putative two-component response regulator [Burkholderia pseudomallei K96243] gi|52427409|gb|AAU48002.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76581454|gb|ABA50929.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|83652807|gb|ABC36870.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|121227367|gb|ABM49885.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124291793|gb|ABN01062.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126218333|gb|ABN81839.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126226814|gb|ABN90354.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|126242479|gb|ABO05572.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|134247170|gb|EBA47256.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|147747398|gb|EDK54474.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147752385|gb|EDK59451.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148026462|gb|EDK84547.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|157808737|gb|EDO85907.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157934208|gb|EDO89878.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|160696027|gb|EDP85997.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|169651545|gb|EDS84238.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|184214589|gb|EDU11632.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217393180|gb|EEC33202.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|225934664|gb|EEH30641.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237503655|gb|ACQ95973.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|238524308|gb|EEP87741.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|242139019|gb|EES25421.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|243062907|gb|EES45093.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254218861|gb|EET08245.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 230 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LLIEDD+ +A I+ L+ F V D+ DGI + + +ILDLGL I Sbjct: 1 MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALAQNRHELVILDLGLPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L R TPV +L+ + D+V+GL SGADDY+ KPF EL ARIRA++R Sbjct: 58 DGMTLLSRFRQTNRHTPVIVLTARDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMR 117 Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RS H+ + + G + ++ + + + L+ +E+ ++E+L LR ++K Sbjct: 118 RSGPHSDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +HL + I+V++ ++RKKL + I TV G GY+L+E Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLEQC---RVEIVTVRGFGYLLQE 223 >gi|295109503|emb|CBL23456.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 228 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 130/228 (57%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIP 58 ++IL+++D+ L ++ L +NF+V G + +++ E + I+LDL L DI Sbjct: 4 IKILVVDDEIKLLQTVTEFLTLQNFSVMQASSGSEALKIFTENKKEIELILLDLMLPDIS 63 Query: 59 GFEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G+ VLR +R KIS PV ILS S + D++ G + GADDYI+KPF+ + I A+++ Sbjct: 64 GYSVLREIR--KISDVPVIILSARSEVTDQMNGFEKGADDYITKPFSLGLVKLHIEAVLK 121 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G ++++ G + + + V + + +T +EY+++ K T L++E LN Sbjct: 122 RA-GKMKNILECGKIKIEKGRQLVYREDEMLEMTRREYELLLYFIEHKETVLSRETILNA 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D +V+ +D + ++RKKL + NYI TV+G GY+ + A Sbjct: 181 VWDYDYAGDVRTVDTLVKQIRKKLGDDC---NYIHTVYGIGYLFEDKA 225 >gi|257093278|ref|YP_003166919.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045802|gb|ACV34990.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 235 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 3/219 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I+++ED+ + I+L L+SE F V+ D + G+ D ++LDLGL D G + Sbjct: 8 IVVVEDEANIRRFIKLALESEGFQVFEADSVKRGLIEAGTRRADLVVLDLGLPDGDGIDF 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121 +R LR A PV +LS ++ DKV L +GADDY++KPF EL+AR+RA + RRSR Sbjct: 68 IRDLR-AWSEIPVLVLSARTTEIDKVAALDAGADDYLTKPFGAAELLARVRAHLRRRSRS 126 Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + G + V+L +TVE G +HLT EY+++ L + LT L +++ Sbjct: 127 AGGTALAEFGSIRVDLARRTVERDGAPLHLTPIEYRLLSYLIANPDCVLTHRQLLKNVWG 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + V++ LRKK+ + ++ T G GY Sbjct: 187 PGHVEDSHYVRVYMGNLRKKIEDDPARPKHLRTEAGVGY 225 >gi|229062519|ref|ZP_04199832.1| Two-component response regulator [Bacillus cereus AH603] gi|228716802|gb|EEL68493.1| Two-component response regulator [Bacillus cereus AH603] Length = 242 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 125/224 (55%), Gaps = 9/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+E+ + + I+LD+ + I G + Sbjct: 15 ILIVDDEKEIRKLIAIYLKNEGYEVLQARDGEEGLEIVRKRDVHLIVLDIMMPKIDGIHM 74 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++V +I+ P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 75 --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++ GD+ +N+ + V + + LT +E++++ELL+ + L E Sbjct: 133 MSGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIY 192 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I K+R+K+ YI+T+WG GY Sbjct: 193 ERVWKEKAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGY 236 >gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 261 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ +DD + I L + + + G + +E+ + + D +ILD+ + + GF Sbjct: 33 MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E R +R K TP+ +L+ D+V GL+ GADDY++KPF+ E+VARIRAI+RR + Sbjct: 93 EACREIR-KKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151 Query: 121 GH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A V L+++LD + V V G ++ KE+ ++ L + ++E Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ +V+ IDV I K+R++L + I+TVWG GY Sbjct: 212 LLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLP--YDCIQTVWGIGY 255 >gi|213158597|ref|YP_002319895.1| two-component heavy metal response regulator protein [Acinetobacter baumannii AB0057] gi|301344826|ref|ZP_07225567.1| two-component heavy metal response regulator protein [Acinetobacter baumannii AB056] gi|301596622|ref|ZP_07241630.1| two-component heavy metal response regulator protein [Acinetobacter baumannii AB059] gi|213057757|gb|ACJ42659.1| two-component heavy metal response regulator protein [Acinetobacter baumannii AB0057] Length = 223 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ LR +KI PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR Sbjct: 61 SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL ++L V G+ I L+ E+ ++ L + K +T+ + ++ Sbjct: 119 QYLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + IDV + +LR K+ K I T+ G GY Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEEYEPK-LIHTIRGLGY 217 >gi|183599669|ref|ZP_02961162.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827] gi|188021923|gb|EDU59963.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827] Length = 222 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 4/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED L+ ++ L S F V + G +L + + ++LD+ L + G Sbjct: 1 MRILLVEDHDELSLWLQKALSSTGFAVDIASDGAIADQLLQTESYSLVVLDVSLPRLSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R PV +L+ S + D+V+GL +GADDY++KPF+ EL ARIRA++RRS+ Sbjct: 61 EVLAQMRKRGQEIPVLLLTANSDVSDRVKGLNAGADDYLTKPFDLAELEARIRALLRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G G L + + + V + LT +E+ ++ L R+ ++K ++ Sbjct: 121 GQVNEPQRFGSLCYHEEGYFL-VDKEPLALTPREFAVLNTLFHRRGRPVSKTQLFEQVFS 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE ++ I++++ ++RKKL+ G I T+ G GY L + Sbjct: 180 LSDEANLQSIELYVHRVRKKLT---GTDVNINTLRGLGYRLEQ 219 >gi|145300939|ref|YP_001143780.1| two-component system osmolarity response regulator OmpR [Aeromonas salmonicida subsp. salmonicida A449] gi|142853711|gb|ABO92032.1| two-component system osmolarity response regulator OmpR [Aeromonas salmonicida subsp. salmonicida A449] Length = 239 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 9/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R LR A PV +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A+ ++ G +NL + + G + LT E+ ++++L L+++ Sbjct: 126 ELPGAPSTAEKMVTFGSYQLNLATRELSRDGEPVALTSGEFAVLKVLVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +N L GR+ + IDV + +LR+ L Y++TVWG GYV + E Sbjct: 186 MN-LARGREYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVFVPDGDGE 239 >gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. EE-36] gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. EE-36] Length = 229 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ A + L+SE F+V + GE+ I L D IILD + + G E Sbjct: 7 QILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIE 66 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ + + PV +LS S D VRGL++GADDY+ KP++ EL+AR+R +RR Sbjct: 67 VCRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRV 126 Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + ++ D++++ + V + + L EY+++ L R +++ L+H+ Sbjct: 127 RPASSGAALSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHV 186 Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + GRD + + +DV I +LRK L+ + GG + I TV G GY L Sbjct: 187 W-GRDIYVDTRTVDVHIARLRKALT-SHGGDDPIRTVRGAGYAL 228 >gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 232 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + G+ Sbjct: 4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R AK P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 64 EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +S + G + ++ + +TV V G +I LT KE+ ++ LL+ E Sbjct: 123 TLNQPKVAENKSALAIGGVVIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ + V I LRKKL I+TVWG GY Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|226946942|ref|YP_002802015.1| response regulator TctD [Azotobacter vinelandii DJ] gi|226721869|gb|ACO81040.1| response regulator TctD [Azotobacter vinelandii DJ] Length = 223 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+ED LA S+ L++ V V G +F ++LD+GL + GF Sbjct: 1 MRILLVEDHAPLADSVAQALRATGLTVDVLHDGVAADLALSSEDFTLVVLDVGLPRLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR PV +L+ + ++D+V+GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRERGNRVPVLMLTARAEVKDRVQGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+L +L + G ++LT +E ++ L R ++KE + ++ Sbjct: 121 LGGERQQRCGELVYDLATGRFALAGEPLNLTAREQAVLSALIARPGRVMSKEQLASQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE I+++I +LR+KL A+G + I T G GY+L Sbjct: 181 LDDEVSPDAIEIYIHRLRRKL-EASGVR--IVTFRGLGYLL 218 >gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ L +E +NV+ GE+ +E+ + E + ++LD+ + D+ G EV Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R K S P+ +LS D++ G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CKRAR-EKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123 Query: 123 AQSLIVTGDL----SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ ++ S+ +D K V + + I LT +E++++ LL+ + + E Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVAINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V + +LR K+ G I TVWG GY Sbjct: 184 KVWKERYFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGY 226 >gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum] Length = 232 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 12/228 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++LA + +L+ E F+ + G + E D ++LDL L + G + Sbjct: 3 RILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR RG Sbjct: 63 VCKELRSVS-TVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR-RG 120 Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ ++ G + +++D+ TV V G + + KE+ ++E L LT+ Sbjct: 121 VTETEAEELPLDDEILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + +LR K+ Y+ TV G GY Sbjct: 181 GQLIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGY 228 >gi|328950079|ref|YP_004367414.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328450403|gb|AEB11304.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 218 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 11/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIP- 58 MRILL+ED+ +A + +L E + V + DL E E D ILD+ L + Sbjct: 1 MRILLVEDEPTVAEPLRALLTREGYAVTWAPDL-EAAWRALTDGEPDLAILDVMLPEDEN 59 Query: 59 -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF + LR A P+ L+ ++ED+V GL G DDY+ KPF EL+AR+RA++R Sbjct: 60 GGFVFAQQLREAGYQGPILFLTARDALEDRVAGLDLGGDDYLVKPFALRELLARVRALLR 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R QS +V G L V+L A+ V G + LT KE+ ++E +L T T E L Sbjct: 120 REAQTKQSRLVRGPLEVDLAARRVRYDGRSVVLTEKEFALLEHFALYPEKTFTVEELLER 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G +I+ V++ +LR+KL+ IETV G GY L Sbjct: 180 CFPGTTS-GPRIVRVYVHRLRQKLA-----PQVIETVPG-GYRL 216 >gi|229096388|ref|ZP_04227360.1| Two-component response regulator vanR [Bacillus cereus Rock3-29] gi|229102503|ref|ZP_04233209.1| Two-component response regulator vanR [Bacillus cereus Rock3-28] gi|228680893|gb|EEL35064.1| Two-component response regulator vanR [Bacillus cereus Rock3-28] gi|228686950|gb|EEL40856.1| Two-component response regulator vanR [Bacillus cereus Rock3-29] Length = 243 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD + I + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 17 ILIVDDDLDIVQFINVNLTQEGFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 77 CRRIR-EKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q + + +N+ ++ V++ G I++T EY ++ L++ KN T E Sbjct: 136 NQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEIY 195 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I +LR K+ +I+ VWG GY Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPRFIQNVWGVGY 239 >gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus sphaericus C3-41] gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus sphaericus C3-41] Length = 220 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 126/222 (56%), Gaps = 7/222 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + I+ L ++N+N+ V G +GI+ FD I+LD+ + ++ GFEV Sbjct: 5 ILVVEDDLEIQELIKQFLMTQNYNIEVASDGVEGIKRLNTQSFDLILLDVMMPNLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR + P+ L+ + +D+++G G DDYI+KPF+ L+ R++A++RRS Sbjct: 65 AKMLRNHS-NIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNHK 123 Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + + +L+V+ D V I LT KE+++++LL + LT+E+ + ++ Sbjct: 124 SWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E ++ID I LRKKL+ YI+TV G GY + E Sbjct: 184 DYSGETRMIDTHIKNLRKKLNLP-----YIKTVKGIGYKIDE 220 >gi|160915463|ref|ZP_02077674.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991] gi|158432583|gb|EDP10872.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991] Length = 235 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 13/228 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + +I + +K++ ++VYV + G G+EL + + I+D+ + + G + Sbjct: 5 ILIVEDEVGIRETISVFMKNQGYHVYVAENGMAGLELLQKEDIHLAIVDIMMPVMDGITM 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 LR PV LS S DK+ GL GADDY++KPF EL+AR+ + +RR Sbjct: 65 TMKLR-ENYDIPVIFLSAKSEDIDKITGLNVGADDYVTKPFEPMELIARVNSNLRRYQQI 123 Query: 119 ---SRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +G + L+ GDL +N + K V ++ +HLT KE++++ELL + + Sbjct: 124 LRLKQGKKEEEQGVLLQVGDLMLNQETKEVSIRKKSVHLTSKEFKILELLMGQPGRIFSA 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E ++++ + I V I KLRKK+ YI+ VWG GY Sbjct: 184 EQIYENVWE-EEAVNTDTIMVHIRKLRKKIEADPRNPEYIKVVWGIGY 230 >gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium glutamicum ATCC 13032] gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 12/228 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++LA + +L+ E F+ + G + E D ++LDL L + G + Sbjct: 3 RILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR RG Sbjct: 63 VCKELRSVS-TVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR-RG 120 Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 ++ ++ G + +++D+ TV V G + + KE+ ++E L LT+ Sbjct: 121 VTETEAEELPLDDQILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTR 180 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV + +LR K+ Y+ TV G GY Sbjct: 181 GQLIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGY 228 >gi|109896556|ref|YP_659811.1| osmolarity response regulator [Pseudoalteromonas atlantica T6c] gi|332304523|ref|YP_004432374.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|109698837|gb|ABG38757.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] gi|332171852|gb|AEE21106.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 240 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD L +E L + + V E + + F ++LDL L G Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGYQVRAAANAEQMDRMLERENFHLMVLDLMLPGEDGLS 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL+AR++A++RR Sbjct: 67 ICRRLRQKENEIPIVMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARVKAVLRRKVV 126 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + HA+ ++ G +NL + + +G + LT E+ +++ L L+++ Sbjct: 127 EAPGAPSHAEQIVEFGKFKLNLGTREMSSEGTPMTLTSGEFAVLKSLVTHPREPLSRDKL 186 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +N L GRD + + IDV + +LR+ L YI+TVWG GYV Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVF 233 >gi|300087596|ref|YP_003758118.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527329|gb|ADJ25797.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 224 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPG 59 MRILL+ED+ LA ++ L + + + GE G+ + EFD +ILD+ L ++ G Sbjct: 1 MRILLVEDNLKLARLLKQGLGDDGHVIELAHEGESGLLYAETSEFDLLILDVMLPGELTG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V R LR I+TP+ +L+ + I +V GL +GADDY+ KPF+ EL A IRA+ RR Sbjct: 61 TDVCRILRKQGIATPIFLLTAKTRIGHRVEGLDAGADDYLCKPFSITELKALIRALQRRQ 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ + ++++ V G ++LT Y+ + LT+ M H++ Sbjct: 121 AAGGQATVEIAGVTIDTVTHEVTTDGKPVNLTAMAYRALNYFINNPERVLTRAMIEEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 DG + ++ + +LR++L A K ++T++G GY LR Sbjct: 181 DGEADLGPGAVESLVKRLRQRLGWDA-RKGPLQTIYGEGYRLR 222 >gi|238759460|ref|ZP_04620624.1| Two-component system response regulator [Yersinia aldovae ATCC 35236] gi|238702357|gb|EEP94910.1| Two-component system response regulator [Yersinia aldovae ATCC 35236] Length = 242 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 118/228 (51%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + L E FN + G+ GI + A+ILD+ L D+ G Sbjct: 16 MKILLVDDDIELGTMLREYLSGEGFNAELVLTGKAGITAALSGNYSALILDIMLPDMSGI 75 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ +R K P+ +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 76 EVLQQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 134 Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 H +S+I G L +N ++ E +G LT E+ ++ELL +TK+ Sbjct: 135 EHPDVVFSDKSVITQGALILNPSTRSSEWRGKSFDLTASEFNLLELLLRSPERVVTKDEL 194 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E + +DV I +R+KL+ G IETV GY +R Sbjct: 195 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNTLNIETVRSIGYRIR 242 >gi|227549025|ref|ZP_03979074.1| possible response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078879|gb|EEI16842.1| possible response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 225 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 12/227 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ EDD+ +A I L S + V D G + ++D ++LDLGL + G + Sbjct: 3 RILIAEDDRGIADFIIRGLSSAGYACDVVDSGPAAFSSARTGDYDLMVLDLGLPHMDGAD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR-AIVRRSR 120 VL LR + + P+ +L+ ++IED++R L+ GADDY+ KPF EL+AR+R + R+ Sbjct: 63 VLEQLRALRETLPIIVLTARTNIEDRIRSLEGGADDYMPKPFQFAELLARVRLRLADRAA 122 Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S + GDL+++L + V+V L+ +E ++E L L++ Sbjct: 123 SSEDSPTDGGFRLSRGDLTLDLRTQRVKVGSTWKDLSRREVGLLETLMRHPGQILSRAQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L+ ++ +P ++DVF+ LRKK+ G +ET+ G GY L Sbjct: 183 LSMVWGMDFDPGSNVVDVFVRALRKKI-----GAEKVETIRGSGYRL 224 >gi|319794112|ref|YP_004155752.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315596575|gb|ADU37641.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 226 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 121/226 (53%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD ++ +++ L +V V G + + + E D + LDL L ++ G Sbjct: 1 MKLLLVEDDPSMQITLQRTLGRRRIDVRVCGDGAEAVAQWRAIEPDVVALDLSLPNLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL R + TPV +L+ ++ D++ GL +GADDY+ KPF+ +EL ARIRA+ RRS+ Sbjct: 61 QVLAQARAEGLRTPVLLLTARGTVGDRIVGLNAGADDYLPKPFDLDELEARIRALRRRSQ 120 Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + G L D + + + LT +E +++ L ++ +TKE Sbjct: 121 SAGPDTGLNPQEIGGLRFEPDNGAIYNRADLLELTPRELALMKALMMKPGHAVTKERLFE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ G + + + I+V + +LRKKL G + T+ G GY+LR Sbjct: 181 LVFPGETDVQYEAIEVVVYRLRKKL---VGTGAVLMTMRGLGYLLR 223 >gi|290477255|ref|YP_003470172.1| response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289176605|emb|CBJ83414.1| response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 230 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 8/226 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E F V + GE ++ D ++LD+ + G E Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFTVVLAHDGEQALQYID-SSIDLLLLDIMMPRKNGIE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELRQDH-QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q ++ L +N + G + LTG E+ ++ LL+ +++E Sbjct: 121 SEQQADSGTPVLEVDKLQLNPGRQEASFDGTILDLTGTEFTLLYLLAQHLGQVVSREHLS 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL N + +T+ GRGY++ Sbjct: 181 QEVLGKRLTPFDRAIDMHISNLRRKLPNRTDELPWFKTLRGRGYLM 226 >gi|225567922|ref|ZP_03776947.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM 15053] gi|225163210|gb|EEG75829.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM 15053] Length = 225 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 120/218 (55%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED++ LA + L ++V G+D + + E ++LD+ L + GF V Sbjct: 4 ILLVEDNEELAGLLRDFLVDRGYSVLRAARGDDAVRYAERGEVRLVLLDIMLPGMDGFAV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 R +R ++ + PV I+S S ++K+ G + GADDY+ KP + E L A++ A+++RS R Sbjct: 64 CRQIRKSQ-NVPVLIMSAKSGKQNKLTGYELGADDYMEKPVDPEILSAKVNALLKRSGRA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L+V+G++++N A+TV ++G + L KEY+++ L TL KE +++ Sbjct: 123 QEEMLLVSGEITLNRKARTVNLRGKPLELNVKEYELLLLFVRNPGKTLRKEYIFGNVWGT 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + + V I LR K+ I TVWG GY Sbjct: 183 DSFSESQTLTVHIKMLRAKIEENPREPKRILTVWGVGY 220 >gi|218516673|ref|ZP_03513513.1| probable two-component response regulator protein [Rhizobium etli 8C-3] Length = 225 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ ALA + +L+ V V G + FD + LDL L ++ G Sbjct: 1 MRILLTEDNIALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVFLDLNLPEMDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VLRA+R + V IL+ + E++V+GL GADDY+ KPF+ E AR+R ++RR Sbjct: 61 DVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDISEFEARVRVLLRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + + G +S +L ++T + + +E ++E+L +R + KE + L Sbjct: 121 GLRSATVGFGGISFDLTSRTFSAGSTPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ I+ ++ +LRK+LS ++T G GY L Sbjct: 181 FDDDISSNAIEQYVSRLRKRLSPHG---LTVKTARGIGYYL 218 >gi|332999989|gb|EGK19572.1| transcriptional regulatory protein qseB [Shigella flexneri K-218] Length = 219 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + G Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV L+ ++ ++V GL+ GADDY+ KPF E+ A++ A++RR+ Sbjct: 61 DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAAKLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGE 218 >gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E K+ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--KWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 119 KKTDAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|159035749|ref|YP_001535002.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157914584|gb|ABV96011.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 224 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 122/218 (55%), Gaps = 6/218 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+IEDD+ + +I+ L + V DG+ + D +ILDL L D+ G V Sbjct: 1 MLVIEDDRDIREAIDDSLSATGHVVRPCGTALDGLRELASRQSDVVILDLHLPDLDGATV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L +R A + PV + + + + +R L++GADDY+ KP++ E+L ARI A++RR G Sbjct: 61 LSLIR-ADSAVPVVVATACDTESEIIRLLRAGADDYVVKPYSVEQLEARIAAVLRRGAGQ 119 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY--D 180 A +++ G L ++ +A+ + G R+ L+ E+ ++ L+ R +T+ L+H++ + Sbjct: 120 AATVLTIGGLHLDAEARIASLDGVRLQLSRLEFDLLTYLAQRAGKVVTRRQLLDHVWRSE 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218 GR ++ +DV + LR+KL +A Y+ TV G G Sbjct: 180 GR---SLETVDVHVTWLRRKLGESASTPRYLHTVRGVG 214 >gi|309812926|ref|ZP_07706654.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] gi|308432998|gb|EFP56902.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] Length = 225 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/227 (34%), Positives = 125/227 (55%), Gaps = 3/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+K LA ++ L E F V V G G L +D I+LD+ L G+ Sbjct: 1 MRVLLVEDEKHLADAVASGLGREGFVVDVAGDGITGQWLGAQNPYDVIVLDIMLPGRNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + PV +L+ D+V GADDY++KPF+ LVAR+RA+ RR Sbjct: 61 DVLAGLRRDGVWAPVLMLTAKDGDLDQVDAFDLGADDYLTKPFSFPVLVARLRALARRGA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +++ G L+++ A+ V ++G I LT KE+ ++ L+ R +K L++++ Sbjct: 121 PERPTVLDVGGLTID-PARHVVMRGDVEISLTAKEFALLLYLARRGGEPASKPEILDNVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E +++V++ LR+K+ +A G +ETV G GY L E A+ Sbjct: 180 GADFEGNDNVVEVYVGYLRRKI-DAPFGTASLETVRGHGYRLVEAAE 225 >gi|297518770|ref|ZP_06937156.1| DNA-binding transcriptional activator CusR [Escherichia coli OP50] Length = 194 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 109/193 (56%), Gaps = 1/193 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+K + L F V + D G +G L ++D IILD+ L D+ G+ Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R LR A P+ +L+ + +IE +V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLMKPFAFAELLARVRTLLRRGA 120 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S DL V+L ++ V G RI LT KE+ ++E + L + + + ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 180 DGRDEPEVKIIDV 192 D + + IDV Sbjct: 181 DMNFDSDTNAIDV 193 >gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 232 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 130/230 (56%), Gaps = 6/230 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DDK + + L L+ E ++V ++ GE+ + + D ++LD+ L + G++ Sbjct: 5 KVLIVDDDKNICDLLRLYLEKEGYSVILSHDGEEAVVKFNALKPDIVLLDVMLPGLDGWQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K + P+ +++ S DKV GL+ GADDYI KPF+ +E++ARI+A+VRR+ Sbjct: 65 VCREIR-KKSNIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRRTGQ 123 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + V LSVN+ ++V G + KE +++ L+ N T++ L+ Sbjct: 124 SPAEMEVREVRYDKLSVNMTRYELKVDGKVVDAPPKELELLFYLASNPNRVYTRDQLLDE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++ + + IDV I +LR+KL + K ++TVWG GY + +D Sbjct: 184 VWGFEYYGDSRTIDVHIKRLREKLEGVS-DKWELKTVWGVGYKFETDEED 232 >gi|293394379|ref|ZP_06638679.1| DNA-binding response regulator [Serratia odorifera DSM 4582] gi|291423357|gb|EFE96586.1| DNA-binding response regulator [Serratia odorifera DSM 4582] Length = 237 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A ++L L+ E F++ G G+ + + +DA+ILDL L I G E Sbjct: 6 RILIVEDDGNIAELLQLHLRDEGFDISHAGDGNLGMAMLEQGGWDALILDLMLPGIDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R R TP+ I S SS +V GL+ GADDY++KPF+ ELVAR++A+ RR Sbjct: 66 ICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125 Query: 122 HAQSL-IVTGDLSVN-LD----AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++L + G LS++ LD ++ V + + LT +E+ ++ + ++ L Sbjct: 126 MSRNLRLDAGILSIDGLDIDPISREVHLNQQPLDLTPREFDLLYFFARHPGKVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 N ++ + E ++ I +LR KL I TVWG GY Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRIKLERNPAEPERILTVWGMGY 229 >gi|291446455|ref|ZP_06585845.1| two component transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291349402|gb|EFE76306.1| two component transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 240 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ LA + L+ E F V G + + + I++D+ L D G Sbjct: 6 LRVLVVDDESYLADLVATALRYEGFETAVAGTGGAAVAQVETFRPHLIVMDVMLPDGSGI 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R LR + PV L+ + EDK+ GL G DDY++KPF+ EEL+ARIRA++RR+ Sbjct: 66 DATRRLRGSGCLAPVVFLTARDATEDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRRTA 125 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ VT DL ++ DA V G + LT E++++ L L+K L+H++ Sbjct: 126 HPAERAKVTFADLEIDDDAHEVRRHGVPVDLTPTEFKLLRYLVAHAGRVLSKRQILDHVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + ++ +I LR+K+ + I+TV GYV+R Sbjct: 186 EYDFGGSDAVVQTYISYLRRKIDVFE--PSLIQTVPRIGYVVR 226 >gi|238025728|ref|YP_002909959.1| putative two-component response regulator [Burkholderia glumae BGR1] gi|330815016|ref|YP_004358721.1| Putative two-component response regulator [Burkholderia gladioli BSR3] gi|237874922|gb|ACR27255.1| Putative two-component response regulator [Burkholderia glumae BGR1] gi|327367409|gb|AEA58765.1| Putative two-component response regulator [Burkholderia gladioli BSR3] Length = 230 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LLIEDD+ +A I+ L+ F V D+ DGI + + +ILDLGL I Sbjct: 1 MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALAQNRHELVILDLGLPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L R TPV +L+ + D+V+GL SGADDY+ KPF EL ARIRA++R Sbjct: 58 DGMTLLSRFRQTNRHTPVIVLTARDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMR 117 Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RS H+ + + G + ++ + + + L+ +E+ ++E+L LR ++K Sbjct: 118 RSGPHSDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +HL + I+V++ ++RKKL + I TV G GY+L+E Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLEQC---RVEIVTVRGFGYLLQE 223 >gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 230 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+K + +E+ LK+E +NV+ GE +E+ E ++LD+ + + G EV Sbjct: 5 ILVIDDEKEIRDLLEINLKNEGYNVFKASNGEKALEILDKEEIHLMVLDIMMPGMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R K + P+ +LS + DK++G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CRRVR-EKYNIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123 Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 Q+L I + ++ V + + + LT +E++++ LL+ + + E Sbjct: 124 NTKMQALDNIIRIESMIIDKSKHKVTIDDNEVSLTAREFEILYLLASNRGRVFSTEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V + +LR KL G I TVWG GY Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKLEQYMEGNKIIHTVWGVGY 226 >gi|330992698|ref|ZP_08316642.1| Transcriptional activator protein CopR [Gluconacetobacter sp. SXCC-1] gi|329760176|gb|EGG76676.1| Transcriptional activator protein CopR [Gluconacetobacter sp. SXCC-1] Length = 218 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 3/218 (1%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 ++EDD A + L+ +V G DG +D IILD L + G +L Sbjct: 1 MVEDDPATTDYVRQGLRENGIDVVCVADGNDGSRQALSQPWDIIILDRMLPGLDGLAILM 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 +R I+TPV L+ M + +V GL+ GADDY+ KPF ELVAR++ ++R + Sbjct: 61 RMRSHAITTPVLFLTTMDGVPSRVAGLRHGADDYMVKPFALRELVARVQVLLRHASPVRH 120 Query: 125 SLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183 + ++T D+ +NL V G ++ L +E +++E T L+++M L ++ Sbjct: 121 ATVMTVADVELNLLTLAVTRNGEKVFLQPQELKLLEYFMRNAGTVLSRQMLLKDVWHMDF 180 Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 I++ +C+LR+KL + G++ I TV G GYV+ Sbjct: 181 PVRTNIVETHVCRLREKLGQS--GQSLIHTVRGSGYVM 216 >gi|262392415|ref|YP_003284269.1| putative two component response regulator transcription regulator protein [Vibrio sp. Ex25] gi|262336009|gb|ACY49804.1| putative two component response regulator transcription regulator protein [Vibrio sp. Ex25] Length = 230 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 11/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L + V + G DG+ E+D I+LD+ L + G+ Sbjct: 1 MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + I TPV +L+ +ED+VRG + GA+DY+ KP+ EL+ARI+ + R Sbjct: 61 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRH-- 118 Query: 121 GHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H + +V DL +++ + G + LT KEY ++ELL + L++ Sbjct: 119 -HISAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTT 177 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++D + + +IDV + +LR K+ + K I TV G GY L E+ Sbjct: 178 IASLVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 227 >gi|167629726|ref|YP_001680225.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] gi|167592466|gb|ABZ84214.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] Length = 234 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++ED+ +A + LKSE F V + G+ I+ EF+ ILD+ L D+ G E Sbjct: 3 KILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R K S PV +L+ + DKV GADDYI KPF+ EL AR++A++RR+ G Sbjct: 63 VLQYIR-RKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEG 121 Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++++ G L +N D V+V+G+ I L KE+ +++ L+ R N +T Sbjct: 122 THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIA 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I +LR K+ ++TV G GY L Sbjct: 182 QIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRL 230 >gi|149190294|ref|ZP_01868568.1| transcriptional activator protein IrlR [Vibrio shilonii AK1] gi|148835901|gb|EDL52864.1| transcriptional activator protein IrlR [Vibrio shilonii AK1] Length = 227 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 124/223 (55%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED++ ++ L + V ++ G D + L ++D I+LD+ L + G+ Sbjct: 1 MKLLVIEDEEKAGAYLKKGLIESGYTVDLSTDGVDALYLATTNDYDLIVLDIMLPKLNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR + I TPV ILS +ED+V+GL+ GA+DY+ KPF EL+AR++ +R Sbjct: 61 QLLQTLRSSDIPTPVIILSAKDQVEDRVKGLELGANDYLVKPFAFIELLARVKNALRHQT 120 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +S++ DLS++L + I LT KE+ ++E L ++ +T+ + + Sbjct: 121 TSIKTESVLCIADLSLDLLKRKATRNNDTIPLTAKEFSLLEYLFAKRGQVVTRTQIASAV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + + +ID + +LR K+ K I+TV G GY L Sbjct: 181 WDMNFDSDTNVIDAAVKRLRSKIDKPYQIK-LIQTVRGMGYKL 222 >gi|78211661|ref|YP_380440.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78196120|gb|ABB33885.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 253 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + V + GE+ +E+ D ++LD+ L + GF V Sbjct: 13 ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEEALEMYHNESPDLVVLDVMLPKLDGFAV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR RG Sbjct: 73 CRRLR-AESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARISTILRRVGRG 131 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +A Q ++ GDL V+ + + V RI+LT E+ ++ELL + + Sbjct: 132 NAVIESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 191 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241 >gi|296135841|ref|YP_003643083.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|294340005|emb|CAZ88369.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] gi|295795963|gb|ADG30753.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 242 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 ++++++DD + + L E + V+V ED + + FD I+LDL L Sbjct: 8 KLMVVDDDARIRDLLRRYLSQEGYEVFV---AEDSKAMSRIMVKERFDLIVLDLMLPGED 64 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + + LR +K TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 65 GLSICKRLRASKDQTPIIMLTAKGEDVDRIIGLEVGADDYLPKPFNPRELLARISAVLRR 124 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 + +V G S++L + + G I LT E+ M++ L L+ Sbjct: 125 QPSPELPGAPSREDETVVFGPFSLDLARRELSKNGEVISLTTGEFAMLKALVRHPRQPLS 184 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ L L GRD E + +DV I +LRK + A YI+TVWG GYV Sbjct: 185 RDR-LAELARGRDYEAFDRSLDVAISRLRKIIETDAAHPRYIQTVWGVGYVF 235 >gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016] gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 240 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ + + G + +++ K I+LD+ L + G++ Sbjct: 14 KILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGMDGYD 73 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R + STP+ +++ DKV GL+ GADDYI+KPF+ EL+AR++AI+RR+ Sbjct: 74 VCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRRT 133 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 V GD+S++ D V G ++ LT KE++++++L K +T++ L+ + Sbjct: 134 AIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDKI 193 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + +DV I +R+K+ + YIET+ G GY Sbjct: 194 WGYEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGY 234 >gi|165869837|ref|ZP_02214495.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|254754585|ref|ZP_05206620.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|164714666|gb|EDR20185.1| DNA-binding response regulator [Bacillus anthracis str. A0488] Length = 227 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 11/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ ++A L+ +F V V GE G+++ ++D IILD+ L + GFE Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K P+ ++S DK+RGL GADDYI+KPF+ ELVAR++A + R Sbjct: 63 ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +L + G +S++ A+ V + I T K+ ++ N L KE Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKD--LLTFFVTNPNQVLNKEQL 178 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + V I KLR+K+ YIETVWG GY Sbjct: 179 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 223 >gi|160900855|ref|YP_001566437.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160366439|gb|ABX38052.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 239 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD A+A ++ L+ + V D + DA++LD+GL D G + Sbjct: 11 RVLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGNGLD 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 R LR A + P+ +LS D+V GL+ GADDY++KPF+ ELVAR RA++RR + Sbjct: 71 WCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRVQR 130 Query: 122 HAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + S++ + V +QG + LT +EYQ++ L R L++E L+ Sbjct: 131 LQPAPTASAAPADALFSIDPQGQRVRMQGVPLELTRREYQLLRCLLERPGRILSREFLLD 190 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + +D + LR KL A +++I T G GY L Sbjct: 191 SIWGQDSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 235 >gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e] gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland 1988] gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL R2-561] gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161] gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL J2-003] gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28] gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578] gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923] gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e] gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578] gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923] gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 237 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ +EL + + D I+LD+ L G E Sbjct: 5 KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + S G L ++ DA +G I LT +E++++ L+ +T+E Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLR 232 >gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 256 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 9/222 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPG 59 +L+++D+++L +EL+ + N L DG E + E IILD+ L D G Sbjct: 34 VLVVDDEESL---LELVAYNLQRNGMAPVLARDGAEALRRLEERRPQVIILDVMLPDTDG 90 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 F + R LR I TP+ +L+ S DKV GL+ GADDY++KPF+ ELVARI+A++RR+ Sbjct: 91 FTLCRHLRERGIQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRT 150 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q + G + ++ V G R+ LT E++++ L+ T++ L+ ++ Sbjct: 151 EGRRQQI---GPIVIDYAGHEVYRDGQRVALTPTEFKLLATLAAEPGRAFTRQELLDRVW 207 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV + LR+KL +I TV G GY L Sbjct: 208 GEEAFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKL 249 >gi|228985640|ref|ZP_04145793.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774035|gb|EEM22448.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 231 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D+ G Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLN 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ D I V I LR+K+++ YI+TVWG GY Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGY 227 >gi|227113940|ref|ZP_03827596.1| two-component system response regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 220 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD+ + ++ L FN+ G+ G K +DA++LDL L + G Sbjct: 1 MRVLLIEDDRLIGDGLKAGLIKLGFNIDWFTEGKAGAAALKAAPYDAVVLDLSLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R A PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G +S+ +++V + + L +E ++EL L + LT+ LY Sbjct: 121 GQLQPALTHGAVSLEPGSRSVTLNSEPLILKSRELALLELFLLNPSRVLTRAQLEEKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LRKKL G +I TV G GY+L Sbjct: 181 WDDDVSSNAVEVHIHHLRKKL-----GSGFIRTVHGVGYIL 216 >gi|150018187|ref|YP_001310441.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904652|gb|ABR35485.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 218 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL++EDD+A+++ I + L + T G + L K FD I++D+ L I GF Sbjct: 3 INILIVEDDEAISNLIRISLGMAGYQCKQTFDGMEAFNLIKQESFDLILMDIMLPGIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+++ R+ ++ PV L+ + + DK+ GL+SGA+DYI KPF EL+ARI ++RR Sbjct: 63 ELMK--RIKSLNVPVIFLTAKNGLADKITGLKSGAEDYIVKPFETVELLARIEIVLRRYS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I L + D + ++ I LT KE+++I LL KN L++E L ++ Sbjct: 121 KN-NNCIEFKRLKIYEDERIIKNGDETIDLTLKEFELILLLVKNKNMALSREYLLEKIWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + ID I K+RKKL A I+TV+ GY L E Sbjct: 180 YEYMGETRTIDTHIQKIRKKLDIAEN----IKTVYKIGYRLEE 218 >gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 226 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+++ + + +L+ E ++V VT+ G + +E D ++LDL L +PG E Sbjct: 3 RILVVEDEESFSDPLSYLLRREGYDVAVTETGPEALEEFDKAGADLVLLDLMLPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR + S PV +L+ S DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCRQLR-TRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVLRRGAE 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q+ + G + +++D V V+G R+ L KE++++ELL LT+ ++ + Sbjct: 122 PEDLVQTTVEAGGVRMDVDRHVVTVRGERVPLPLKEFELLELLLRNAGRVLTRVQLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV + +LR K+ ++ TV G GY Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKIEPDPANPRHLVTVRGLGY 222 >gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 242 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ A+ ++ L E + G D + + Y D ++LD+ + + G Sbjct: 10 RILIVDDEPAVREALRRSLAFEGYGTQDAVDGVDALARMESYAPDLVVLDVQMPRMDGLT 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 R +R + + P+ +L+ ++ D+V GL +GADDY+ KPF +EL ARIRA++RRS Sbjct: 70 AARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 120 -RGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 R A + ++ DL ++L + V G + LT E+ ++E+ LT+E Sbjct: 130 ARATAGAPDTGDVLSFEDLRMDLATREVTRGGRTVELTRTEFTLLEMFLAHPRQVLTREQ 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ EP +DV++ LR+K + A G + TV G GY LR Sbjct: 190 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALR 237 >gi|323702467|ref|ZP_08114131.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532606|gb|EGB22481.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 222 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 129/232 (55%), Gaps = 22/232 (9%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED++ L+ ++ +LK N+ V GE G + + +D IILD L G Sbjct: 1 MRLLLVEDEQRLSDALAYILKKNNYAVDTAYDGETGQAMAETGIYDIIILDRMLPCKEGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR I TPV +L+ ++E+++ GL +GADDY+ KPF+ EL+AR+RA+ RR Sbjct: 61 EILKELRNQGIGTPVLMLTAKDAVENRIEGLDAGADDYLIKPFSTGELLARVRALGRR-- 118 Query: 121 GHAQSLIVTGD----LSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +++ + GD + LD + EV G I LT KE ++EL +T+E Sbjct: 119 ---RNVQLGGDKLEAWGLILDPQRCEVTKDGTTIKLTLKESLLLELFMRNPGQVITREQI 175 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222 L+ ++ + E +++++ LRKKL N+ IET+ G GY L+ Sbjct: 176 LDRVWGLDSDVETGTVEIYVHYLRKKL-------NFRDISIETIRGVGYCLK 220 >gi|209883336|ref|YP_002287193.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha carboxidovorans OM5] gi|209871532|gb|ACI91328.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha carboxidovorans OM5] Length = 231 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ + + + L +E + + GE+ L + D I+LDLGL DI G Sbjct: 6 VKILVVDDEPPIRKLLRVGLTAEGYAMVEAVNGEEAAALITEEKPDLILLDLGLPDISGH 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++L R + P+ +LS + V+ L+ GADDY++KPF EL ARIR +R Sbjct: 66 DLLERWRAELVELPIVVLSSRTDETGIVKALELGADDYLTKPFGMRELAARIRVALRHKL 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + GDLSV+L + V+V + L+ KEY+++ +L +T + L H+ Sbjct: 126 QQQGERPIFQVGDLSVDLVKRIVKVADKEVKLSPKEYEILRVLVQHAGKVITHQHILKHV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + G +V+ + V++ +LR+K+ YI T G GY LRE Sbjct: 186 WGGST--DVQYLRVYVRQLRQKIEATPDQPQYILTETGVGYRLRE 228 >gi|84498188|ref|ZP_00996985.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84381688|gb|EAP97571.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 227 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 122/219 (55%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+L+++DD ALA + ++L++E V +V D G + + D ++LD+ L I G Sbjct: 6 RVLVVDDDLALAEMLGIVLRNEGLEVDHVAD-GSGALAAFRETRPDVVLLDVMLPGIDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R A+ P+ +L+ + D V GL+SGADDY+ KPF +EL+AR+RA +RR Sbjct: 65 EVCRRIR-AESGVPIVMLTARTDTIDVVVGLESGADDYVVKPFKPQELIARVRARLRRGD 123 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +++ +V+ +G + LT E+ ++ L+ + T+E+ L ++ Sbjct: 124 DVEPERLTIGDLVIDVAGHSVKREGESLSLTPLEFDLLVALARKPWQVFTREVLLEQVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 184 YRHAGDTRLVNVHVQRLRSKIEKDPERPEIVVTVRGVGY 222 >gi|253575388|ref|ZP_04852726.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845385|gb|EES73395.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 235 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 130/228 (57%), Gaps = 7/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +L H I+ L+ +++ VY TD G+ + L + + D IILDL L D+ G + Sbjct: 5 KILIVDDEPSLLHVIKAYLEKQDYLVYETDSGQGALRLFENLQPDLIILDLMLPDLSGED 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R K P+ +L+ S +D V GL GADDY+ KPF+ EL+AR+ +++RRS+ Sbjct: 65 VCKTIR-KKSDIPILMLTAKSGEDDLVHGLLIGADDYLVKPFSPRELMARVISLLRRSKS 123 Query: 122 -----HAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + G+ LS++ + V V+G + LT E++++E L+ ++ + Sbjct: 124 AGYTTQEKKISFGGNRLSIDPERHEVTVRGEIVQLTPIEFKLLETLAKHPKRAFSRFELV 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 N + E + IDV I +R+K+ + ++I TV+G GY +E Sbjct: 184 NLIQGDDFEGMERTIDVHIKNIRQKIGDDPKNPSFIITVYGVGYKFQE 231 >gi|218460851|ref|ZP_03500942.1| two-component transcriptional regulator [Rhizobium etli Kim 5] Length = 121 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 54/82 (65%), Positives = 69/82 (84%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+ Sbjct: 1 MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60 Query: 61 EVLRALRVAKISTPVCILSGMS 82 EVLR LR++K+ TP+ ILSGM+ Sbjct: 61 EVLRTLRLSKVKTPILILSGMA 82 >gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26] gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932] gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55] gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34] gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79] gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196] gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291] gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58] gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196] gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291] Length = 232 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 15/230 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A IE+ L +EN+ VY G D + EFD ILD+ L + GF Sbjct: 4 KILVVDDERDIADLIEVYLTNENYIVYKFYSGLDALNCINLNEFDLAILDVMLPGVNGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ DK+ GL GADDY++KPF ELVAR++A +RR + Sbjct: 64 LCQKIR-EKYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQIRRYKK 122 Query: 122 HAQSLIVTGDLS-------VNLDAKTVE--VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 ++ SL +LS + L+ +T E + G + LT E+ ++ +L K + + E Sbjct: 123 YSGSLQSGEELSHIFSFLGLELNTQTYECHLNGKALSLTPTEFSILHVLLKNKGSVVNSE 182 Query: 173 MFLNHLYDGRDEPEVK---IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ +DE K I V I LR+KL + YI+T+WG GY Sbjct: 183 NLFHAIW--KDEYYNKSNNTITVHIRHLREKLGDTVDEAKYIKTIWGVGY 230 >gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911] gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911] Length = 237 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 19/236 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++++ +E LK + V GE G + D I+LDL L + G E Sbjct: 4 KVLVVDDEQSIVTLLEYNLKQAGYEVITAMDGESGKDFALQERPDLIVLDLMLPKLNGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR KI TP+ +L+ DKV GL+ GADDY++KPF+ E+VAR++AI+RR++ Sbjct: 64 VCKQLRQEKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQ- 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRI--------------HLTGKEYQMIELLSLRKNT 167 L D+ ++ + G +I LT KE++++ L+ K Sbjct: 123 ----LTAGQQEQAEEDSDSIRIGGLKIFPEHYEAFFSEELLELTPKEFELLLYLAQNKGR 178 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 LT++ L+ +++ + +I+DV + LR+K+ YI+T+ G GY L E Sbjct: 179 VLTRDQLLSAVWNYDFAGDTRIVDVHVSHLREKIEENTKKPAYIKTIRGLGYKLEE 234 >gi|148546876|ref|YP_001266978.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148510934|gb|ABQ77794.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|313497928|gb|ADR59294.1| Winged helix family two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 227 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD +A I L ++ V + + +FD +ILDLGL D G Sbjct: 1 MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMILDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR + PV +L+ ++ D+V GLQ+GADDY+ KPF+ EL AR+ ++RR Sbjct: 61 KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G L + + + G + L+ +E +++ L L+ E + +Y Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL N +ETV G GY L Sbjct: 181 FSDEVESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216 >gi|313144025|ref|ZP_07806218.1| two-component regulator [Helicobacter cinaedi CCUG 18818] gi|313129056|gb|EFR46673.1| two-component regulator [Helicobacter cinaedi CCUG 18818] Length = 223 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 16/222 (7%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGE---DGIELCKFYEFDAIILDLGLTDIPGF 60 ++IEDD AL SIE ML N + Y TD+ E DG +D ++ D L D G Sbjct: 1 MVIEDDSALCKSIEDML---NGHSYQTDIAENLKDGEYFISIRNYDLVLSDWDLPDGCGV 57 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ ++ TPV I+S SS+E+++ + GADD++SKPFN E L+ RI+A R R Sbjct: 58 DIISQVKEKSPRTPVVIMSSKSSVENELHAFKEGADDFVSKPFNAEVLLVRIQA---RLR 114 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S+I DL +N D + + +G I + GK ++++ L+ ++ ++KE L+ ++ Sbjct: 115 FWGSSVIEIEDLVINPDEEKITYKGQEIEVKGKPFEVLTHLARHRDQIVSKEQLLDAIW- 173 Query: 181 GRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EPE+ +I+V I ++R+K+ IETV RGY Sbjct: 174 --EEPELVTPNVIEVAINQIRQKMDKPL-NIGTIETVRRRGY 212 >gi|310640161|ref|YP_003944919.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309245111|gb|ADO54678.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 219 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 7/221 (3%) Query: 6 IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65 +ED+ + I K N+ VY G+D + + + IILD+ + ++ G+EV R Sbjct: 1 MEDEIRIREVIADYFKQNNWEVYEAGNGKDALLWFDSVQPELIILDIMMPELDGWEVCRQ 60 Query: 66 LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125 +R ++ P+ +L+ S +DK+ G + GADDY++KPF+ + L+AR A+++R GH Q Sbjct: 61 VR-SRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEGHVQP 119 Query: 126 ---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ G +N A +EV + LT KEY+++ LL K ++++ LN ++ Sbjct: 120 ESHILRFGSAMLNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVVSRDAILNRVWGIN 179 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +++D I KLR KL + +I TV+G GY E Sbjct: 180 FEGDTRVVDTHIKKLRSKLGRES---RHIRTVFGTGYRFEE 217 >gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 239 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 131/236 (55%), Gaps = 9/236 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++++ ++ L+ ++V GE+ +E + D I+LD+ L + G + Sbjct: 4 KILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALEQAEKENPDLIVLDVMLPKVDGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR K+ P+ +L+ DKV GL+ GADDY++KPF+ E+ AR++AI+RR Sbjct: 64 VCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRADI 123 Query: 119 ---SRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 S+G + I+ G+L + + + ++ LT KE++++ L K LT++ Sbjct: 124 SSLSQGREEEKDGKILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTRD 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + L+ +++ + +I+DV I LR K+ + YI+T+ G GY L E +E Sbjct: 184 LLLSAVWNYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEEPKMNE 239 >gi|255527226|ref|ZP_05394109.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255509090|gb|EET85447.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 235 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59 ++IL++EDDK ++ I +L+ E + + G + ++ F EF I+LDL + + G Sbjct: 7 IKILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMVPFVDG 66 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 FE++R +R K + P+ ++S ++ DK+ + GADDYI KPF+ E V RI+A++RR Sbjct: 67 FEIIRRVR-QKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRRY 125 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + +S I DL V+++A T+ I +T E+++++L L N TK Sbjct: 126 IYFNSEQEMHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKSQ 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ + V I +LR K+ + A YI TVWG GY L E Sbjct: 186 IYDSIWGQDALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKLGE 235 >gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 6/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V + G + D ++LDL L + G E+ Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEASVVNDGAQALSTFDRVSPDIVLLDLMLPGMSGTEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 +ALR + S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKALR-TRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDL 122 Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+ ++ G + ++++ V V G +I L KE+ ++E L LT+ ++ Sbjct: 123 AEEDLDIGILEAGPVRMDVERHIVAVNGEQITLPLKEFDLLEYLLRNAGRVLTRGQLIDR 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + K +DV + +LR K+ ++ TV G GY L Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEPDPANPKHLITVRGLGYKL 226 >gi|89896435|ref|YP_519922.1| hypothetical protein DSY3689 [Desulfitobacterium hafniense Y51] gi|89335883|dbj|BAE85478.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 232 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++A+A +E+ LK+EN+N++ G+D ++ + + D ILD+ L D+ GF + Sbjct: 5 ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIEKEKLDLAILDVMLPDVDGFSI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R K + PV +L+ DK+ GL GADDYI+KPF EL+AR++A +RR Sbjct: 65 CRQIR-EKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTKY 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I L +++D + ++ LT E+ ++ +L + ++ E Sbjct: 124 NSAEPNQEEHVIAFSGLVLDMDTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEELF 183 Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ D + V I LR+K+ ++A YI+TVWG GY Sbjct: 184 SEVWGDKYFTNSNNTVMVHIRHLREKMQDSAEHPKYIKTVWGVGY 228 >gi|327394208|dbj|BAK11630.1| transcriptional regulatory protein BasR/PmrA BasR [Pantoea ananatis AJ13355] Length = 228 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 20/238 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L L+ + DG+ + E + ++LD+G Sbjct: 1 MKILIVEDDALLLQGLVLALEGAGYVC-------DGVSTVRSAEAHLASGLYSLVLLDIG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G +L+ LR K PV IL+ +IE+++ GL +GADDY+ KPF +EL+ARIR Sbjct: 54 LPDEDGLHLLQRLRRQKQMQPVLILTARDTIEERIAGLDAGADDYLIKPFALDELLARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR S + G+LS+++ + + + + LT KE+ ++ L L+ + +E+ Sbjct: 114 ALIRRHVNQGDSRLEVGNLSLDMTHRQIHLDDVLLDLTPKEFSILSRLMLKAGHPVHREL 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230 +Y+ +EP ++V I LR K+ GK I TV G GY L + A++E+ Sbjct: 174 LYQDIYNFDNEPSTNTLEVHIHNLRDKV-----GKATIRTVRGFGYALSQPRAENESS 226 >gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S] Length = 237 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ +EL + + D I+LD+ L G E Sbjct: 5 KILVVDDEKTIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + S G L ++ DA +G I LT +E++++ L+ +T+E Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLR 232 >gi|84394086|ref|ZP_00992821.1| putative two-component response regulator [Vibrio splendidus 12B01] gi|84375277|gb|EAP92189.1| putative two-component response regulator [Vibrio splendidus 12B01] Length = 243 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 9/232 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD LA +++ LK + NV + E +L +FD ++LD GL D G + Sbjct: 12 ILLVEDDDDLAELVQMHLKFQGHNVERANTIEKAQDLYLDGQFDLVVLDRGLPDGDGLDF 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R + TPV +L+ + DKV GL++G DDYI+KPF+ E AR+R ++RR Sbjct: 72 CRMIRQKEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLSHV 131 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +S++ G L + + V + + LT E+ ++ L+ R +K+ Sbjct: 132 ESVTQEAMTTESIMNFGGLIIQPERHQVSLNNRDVPLTATEFTLLHFLATRPGRVYSKDE 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+H+++ + + +LR KL+ ++I+TVWG GY A Sbjct: 192 LLDHVWNTHHSGYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFESKA 243 >gi|120599950|ref|YP_964524.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|146292114|ref|YP_001182538.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|120560043|gb|ABM25970.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145563804|gb|ABP74739.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] gi|319425410|gb|ADV53484.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 237 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 12/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD LA+ I LKS +V V G+ + Y+ D I+LD+ L + G Sbjct: 9 RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + L + P+ ++S + S ED+++GL+ GADDY+ KP + LVARI ++RR Sbjct: 69 LCEKLP-DYFAGPILLMSALGSTEDQIKGLELGADDYVVKPVDPALLVARIHNLLRRQNQ 127 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 Q+ + G LS++ + + + LT E++++ LL+ + L++ ++ Sbjct: 128 PPQAESHCLTFGKLSIDPHTHAIRLDDKEVDLTSHEFELLWLLASQAGQVLSRQYIYQLL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LN +DG+D + IDV I +LRKKL++ I+TVWG+GY+ A Sbjct: 188 LNIDFDGKD----RKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLFAPEA 234 >gi|282866555|ref|ZP_06275598.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282558602|gb|EFB64161.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 239 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 7/225 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD ++ + L + + V G + + D I+LD+ L D GF V Sbjct: 10 VLVVEDDPSIRTLLTSALHAAGYRVAPAADGREALAETDRCRPDLIVLDVMLPDTDGFAV 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + TPV L+ + +ED++ GL SG DDY++KPF+ +E++ R+RAI+RR+ G Sbjct: 70 TRELRARGVYTPVLFLTARTEVEDRIIGLSSGGDDYVTKPFHIQEILLRVRAILRRTGGP 129 Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A + + DL V+ + TV G + L+ E++++ L L K L Sbjct: 130 APVPAERPPLRYADLGVDRERHTVHRGGRPVRLSPTEFRLLVCLVSHPEKVLEKREILQE 189 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +I+D +I LR+K+ G I TV G GY LR Sbjct: 190 VWQYGFAGDTRIVDTYIKNLRRKIDQE--GPPLIHTVRGVGYCLR 232 >gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 223 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 131/222 (59%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 ++L+IED++ + ++ L++ + V V + G+ G+E + I+LD+ L DI G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNNDISIILLDIMLPDISGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R K PV +++ DK+ G + GADDY+ KPF+ +E+VAR++AI+ R+ Sbjct: 63 SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTS 121 Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ + +S+N+ ++ V V G +I LT KE+ +++LL K +++E LN ++ Sbjct: 122 GESEVEKTEYEGISINVSSRQVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ +D I +LR+KL + I+TVWG GY L Sbjct: 182 GYDFYGDLRTVDTHIKQLREKLGEK---RKLIKTVWGIGYKL 220 >gi|220911579|ref|YP_002486888.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219858457|gb|ACL38799.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 246 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L+++D+ +L+ + + L+ ++V V G + ++L K + D ++LD+ L G Sbjct: 22 IRALVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKLAKDFRPDVLVLDVMLPGFDGV 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R P L+ +++D++ GL +G DDY++KPF+ EE++ R+ +V+RS Sbjct: 82 ELLGRIRAFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVILRLHRLVQRSG 141 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A +V GDL +N+D + V G + LT +++++ L ++K L+ + Sbjct: 142 VAAMDTAELVVGDLVLNVDTREVTRAGDDVQLTATQFELLRYLMENPKRVISKAQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D + I++++I LRKK+ A I TV G GYV++ Sbjct: 202 WDYDFGGQANIVELYISYLRKKID--AVHPPMIHTVRGAGYVIKP 244 >gi|153853122|ref|ZP_01994531.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814] gi|149753908|gb|EDM63839.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814] Length = 227 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 1/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L++ED+K + ++ L + V GE+ +E +D I+LDL L + G Sbjct: 3 LRLLIVEDEKQICDAVAKSLYDAGYEVDTCYDGEEALEYILTENYDLIVLDLNLPGMDGM 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR + T V ILS I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR Sbjct: 63 EILKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +GD+ + + + +I LT KE ++E L L +++E + H++D Sbjct: 123 VQKDVCLESGDIMFDTIKREAYAKETKISLTRKEKGILEYLLLNLGRPVSQEELMEHVWD 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + I V + LR+KL A G + I G GY +RE + Sbjct: 183 ASVDSFSGAIRVHMSSLRRKL-KAVLGYDAIMNKVGEGYKIREES 226 >gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33] gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7] gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407] gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3] gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis 98HAH33] gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407] gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7] gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein, C-terminal [Streptococcus suis GZ1] gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14] gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3] Length = 234 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VARTIRKTS-NVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121 Query: 121 GHAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q+ I V GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 122 AETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY ++ N Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233 >gi|21885924|emb|CAD29778.1| putative transcriptional regulator [Arthrobacter sp. C2-2] Length = 223 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 124/219 (56%), Gaps = 10/219 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD L I +L ++++ V + G+ G+ L ++ +++D GL + G E Sbjct: 8 RLLLVEDDPVLGPLIAELL-ADDYEVQLATDGQKGLHLGLTGDWAVLVVDRGLPVLDGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L ALR + TP IL+ + + +K+ GL +GA+DY++KPF+ EL AR+RA+ R+ Sbjct: 67 LLAALRRQGVGTPALILTALGATAEKIEGLDAGANDYMTKPFDAGELRARLRAMT-RTFA 125 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + + GD + ++ + G RI LT KE +++ LL+ + T+ ++ L+ Sbjct: 126 AAPTQLAIGDWMLEPASRLLRSDYGDRIELTAKESELLALLAGEPDRVFTRPELMDALFH 185 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +D P V ID ++ LR+K+S K + TV G GY Sbjct: 186 PQDSPGV--IDTYVHYLRRKVS-----KTVVRTVHGVGY 217 >gi|323699757|ref|ZP_08111669.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. ND132] gi|323459689|gb|EGB15554.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans ND132] Length = 240 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 12/230 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+I+DD+ L + + + V G DG+++ FDAI+LD+ L DI G + Sbjct: 10 VLMIDDDENLCGVVSDFMGAYGLEVQYALDGNDGLQMALSSAFDAILLDMMLPDIDGLTI 69 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+ LR PV I+S + + DK+ GL+ GADDY+ K F EL+AR+RA++RRSR Sbjct: 70 LKQLRAKAPKLPVIIISAQTDVSDKIVGLEMGADDYVPKTFAPRELLARLRAVLRRSRTS 129 Query: 123 AQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 A+ + +V L ++ ++ G + L+ E+Q++ ++ +++ Sbjct: 130 AEDMVEEESCDGETVVIHGLMLDSTRMQADLNGKTLDLSTIEFQLLYRMASHPGRVFSRD 189 Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ ++ GR+ + +D+ I LR+KL ++ +Y+ TV G GY+ Sbjct: 190 QLISDIF-GREYCIFDRSVDMHISSLRRKLGDSPRTPSYLRTVRGSGYMF 238 >gi|322805361|emb|CBZ02925.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 228 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 12/224 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K ++ ++ L+ E + VY T G + IE+ K + IILDL L DI G EV Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDISGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 R +R + + +L+ ++ D++ GL GAD+Y+ KPF+ EL AR+ A+ RR + Sbjct: 64 CRIIRQSS-DVHIFMLTAKRALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 +LI G L ++ D + V+V G + +T E+ ++ L K L++E +N + Sbjct: 123 NSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGIVLSREQLINKIF 182 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++G D + IDV I +RKK+ YI TV GY Sbjct: 183 GIDFNGYD----RTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222 >gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13] Length = 239 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/228 (29%), Positives = 127/228 (55%), Gaps = 10/228 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RIL+++D+ + +++ L+ EN+ + D G +E+ E+D I+LD+ + + G Sbjct: 5 VRILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMALEKEYDVILLDVMMPGMDGM 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV + +R K +TP+ +L+ ++V+G + G DDYI KPF+ E+V R++A++RR Sbjct: 65 EVCKEIREKK-ATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALLRRSS 123 Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + + +IV L+++ DA V +G I+LT KEY+++ L+ + +E Sbjct: 124 STTFLTTETTTKDVIVFPHLTIDNDAHRVTSEGKEINLTPKEYELLYFLAKSPDKVFDRE 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219 L ++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 184 QLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSEPASKMIVTVWGVGY 231 >gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 234 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + + LK ++F VY + G + + + + DA ILD+ + + GFE Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQDFEVYSANSGNEALRIAREVNPDAYILDVMMPGMDGFE 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +L LR + PV L+ ++ ++ GL GADDY++KPF+ EE++ R+R I+RR Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127 Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +S + DL++N D V G I L+ E+ ++ L K L+K L++ Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ + +++ +I LR+K+ G I TV G GYVLR Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKID--TGETQLIHTVRGVGYVLR 230 >gi|294790736|ref|ZP_06755894.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304] gi|294458633|gb|EFG26986.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304] Length = 241 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 14/231 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ LA +I L SE +N +T G + + Y+ D I++D+ L + G E Sbjct: 14 VLVVEDEPTLATAIGQRLASEGWNTRITGDGASAVHIAASYKPDLILMDIMLPVMDGLEA 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + + A+ PV +L+ DKV GL +GADDY++KPF+ ELVAR +A++RR Sbjct: 74 TKRITAAR-PVPVLMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 132 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ L+++ + V + G +HLT E+ ++ L+ + LT+E Sbjct: 133 KVIAKNSENEKVLEFNGLTIDPAQRLVLLNGQEVHLTPTEFDLLATLARKPKQVLTREKL 192 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++D D + +D + LR KL G I TV G GY A Sbjct: 193 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSEMIRTVHGVGYAFEPPA 238 >gi|226227765|ref|YP_002761871.1| phosphate regulon transcriptional regulatory protein PhoB [Gemmatimonas aurantiaca T-27] gi|226090956|dbj|BAH39401.1| phosphate regulon transcriptional regulatory protein PhoB [Gemmatimonas aurantiaca T-27] Length = 239 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 125/231 (54%), Gaps = 10/231 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + + L + V G D +E+ + I+LDL L + GF+ Sbjct: 10 RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69 Query: 62 VLRALRVAKISTPVCILSGMSSIE--DKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL LR + + V +L + E D++RGL GADDY++KPF+ ELV R+ AI+RR+ Sbjct: 70 VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRT 129 Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G A + +V G L ++ A TV V G + LT E++++ L+ R+ + L Sbjct: 130 -GSATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHLL 188 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + + + +D+ + +LR KL AAG IETV G GY LR +A Sbjct: 189 ETVWEAAPDIQTRTVDMHVQRLRSKL-GAAG--ELIETVRGFGYRLRASAP 236 >gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 228 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 124/221 (56%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L+IEDD +A + L ++ E + V + GE+G+ E D +I+D+ L ++ G Sbjct: 1 MHVLIIEDDANIAELVSLYMEKEGWRVTIASDGEEGLSCYYDSEPDLLIVDIMLPEVNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R +R P+ IL+G +D VRGL +GADDY+ KPF +EL+AR+++++RRS Sbjct: 61 DICRDVRQDDRLVPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRRSF 120 Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +A S G+ S++ + + G I +E +++ LL K TL++E L+ + Sbjct: 121 PYAGSTTFFTAGNTSLSPEQHEWRINGELIAAAPREIRVLSLLVHCKGQTLSREQILDPV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + + +DV + ++R+KL + + TV G GY Sbjct: 181 WGKDFDGDPRTVDVHMKRIREKLRTFESDWSLV-TVRGVGY 220 >gi|56963624|ref|YP_175355.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909867|dbj|BAD64394.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 228 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD+++A ++ L+ E+F V GE G + +++DL L + GF Sbjct: 1 MAILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 + +R A P+ ++S + DKV+ GADDY++KPF+ EL AR++A +R Sbjct: 61 ALCEKIR-ASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYE 119 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RS + + D+ +++ + V +G +I LT KE++++ L+ TKE Sbjct: 120 RSYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAA 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++G D + + + V + +R KL + YIETVWG GY Sbjct: 180 VWNG-DGFDSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGY 220 >gi|55979989|ref|YP_143286.1| response regulator [Thermus thermophilus HB8] gi|55771402|dbj|BAD69843.1| response regulator [Thermus thermophilus HB8] Length = 223 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 114/218 (52%), Gaps = 2/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD + + L+ E F V G + +E D ++LD GL D+ G E Sbjct: 3 RVLLVEDDSQVGELVRRFLEREGFAVAWVRFGREALERVGEEGADVVVLDRGLPDMEGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR PV +L+G + E +V GL GADDY+ KPF+ EL+ARI+A++RR+ Sbjct: 63 VLKGLRSLDPLLPVLLLTGRADEESRVEGLLEGADDYLGKPFSLRELLARIKALLRRAGK 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L V+L + ++G + L+ E ++ + + T+ L ++ Sbjct: 123 EGRRRF--GPLEVDLGGRRAYLEGEPLRLSPTEMNLLLVFAQAPGRVFTRGELLERVWGP 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E +++D ++ LRKKL + +IETV G GY Sbjct: 181 EFEGSERVVDAYVRLLRKKLRDDPEAPRFIETVVGLGY 218 >gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4] gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4] Length = 229 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+ +LA + +L+ E F V V G +E + D ++LDL L + G + Sbjct: 3 RVLIVEDEDSLADPLAFLLRKEGFEVGVAGDGPSALESFESEGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR+ S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 63 VCKRLRMTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAE 121 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++ +G + ++++ TV V+G + L KE+ ++E L LT+ + Sbjct: 122 AEAEPVEEIGVLESGPVRMDIERHTVMVRGAAVTLPLKEFDLLEYLLRNSGRVLTRGQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 DRVWGSDYVGDTKTLDVHVKRLRSKIETDPGKPVHLVTVRGLGY 225 >gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60] gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60] Length = 257 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 15/231 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58 RIL+++DD L ++ L+ + Y+ DG ++ K + F I+LDL L + Sbjct: 24 RILVVDDDARLRTLLQRFLEDDG---YIVRTAHDGSQMDKLMQRELFSLIVLDLMLPNED 80 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + LR P+ +L+ S D++ GL++GADDY+ KPFN +EL+ARI+A++RR Sbjct: 81 GISICHRLRAENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 140 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + ++ G +++L +T++ G+ + LT E+ +++ L LT+ Sbjct: 141 QTRELPGAPSQQMEVVEFGSWTLDLSTRTLKRDGNIVTLTTGEFSVLKALVQHPREPLTR 200 Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +N L GR+ + + IDV + +LR+ + + YI+TVWG GYV Sbjct: 201 DKLMN-LARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 250 >gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555] gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555] Length = 231 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ + + G + +++ K I+LD+ L + G++ Sbjct: 5 KILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGMDGYD 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R + STP+ +++ DKV GL+ GADDYI+KPF+ EL+AR++AI+RR+ Sbjct: 65 VCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRRT 124 Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 V GD+S++ D V G ++ LT KE++++++L K +T++ L+ + Sbjct: 125 AIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + +DV I +R+K+ + YIET+ G GY Sbjct: 185 WGYEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGY 225 >gi|134099376|ref|YP_001105037.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009928|ref|ZP_06567901.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911999|emb|CAM02112.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 220 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 9/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +L++EDD +A ++ +L F+ G +E ++ D ++LDLGL D GF Sbjct: 1 MLLLIVEDDDHVASALAAVLGRHGFDTERARTGAQALEALS-HDPDLVLLDLGLPDTDGF 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ R +R + P+ +++ + ++ GL GADDY+ KP++ EL+ARI A+ RRS Sbjct: 60 DLCRRMR-QRYDRPILVVTARTDTRARIHGLNLGADDYVVKPYDVGELIARIHAVARRSA 118 Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ T G +SV++D++ V G + LT KE+ ++ +L+ + ++ L+ Sbjct: 119 PRGETATPTRHAGPISVDVDSREATVDGRPVQLTRKEFDLLAMLARQPGVVFSRGQILSE 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + ++V + LR KL G + ++TV G GY LR Sbjct: 179 VWSTHWQGSQRTLEVHVASLRTKL----GLPDAVQTVRGVGYRLRP 220 >gi|329113654|ref|ZP_08242430.1| Transcriptional regulatory protein QseB [Acetobacter pomorum DM001] gi|326697014|gb|EGE48679.1| Transcriptional regulatory protein QseB [Acetobacter pomorum DM001] Length = 223 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L +++ ++ + V ED ++D ++LDLGL D G Sbjct: 1 MRILIVEDEHDLGAAVQERVRQDGHAVDWFMTLEDARAAVATVDYDFMLLDLGLPDGNGR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 ++LR +R T + I + I D++ GL GADDYI KP++ ELVARI A+ RR Sbjct: 61 DLLREIRRTSFDTAILITTAEDQISDRIAGLSDGADDYIVKPYDLNELVARIAAVARRYV 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q+ G++ ++ + ++V + LT +E+ ++ELLS R ++ LY Sbjct: 121 TPRRQACYQIGEIVIDRENRSVMRNEMELELTAREWAIMELLSRRPGRIYSRHQIDTALY 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + ++VFI +LRKK+ N I+TV GRGY L + A Sbjct: 181 ALDQDVGSNTVEVFISRLRKKVGNTV-----IKTVRGRGYCLADRA 221 >gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 14/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD L + L+ F V G + + I+LD+ L D GFE Sbjct: 6 RLLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQPPGLIVLDVMLPDFDGFE 65 Query: 62 VLRALR-----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 V+R LR A PV L+ + ED++ GL++G DDY++KPFN EELV RIRAI+ Sbjct: 66 VVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAIL 125 Query: 117 RRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RR+ G +V G L ++ D+ V G + L+ E+ ++ +L L+K L Sbjct: 126 RRTSGRQTDGRLVVGALELDPDSHQVTRDGSPVQLSPTEFSLLRVLMENAGQVLSKSQLL 185 Query: 176 NHLYD---GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ G D+ I+ +I LR+K+ I TV G GYVLR + Sbjct: 186 ELVWQYDFGGDD---SIVASYISYLRRKVD--LDEPKLIHTVRGTGYVLRRH 232 >gi|239501396|ref|ZP_04660706.1| Transcriptional activator protein irlR [Acinetobacter baumannii AB900] Length = 223 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 60 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ LR +KI PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR Sbjct: 61 SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL +++ V G+ I L+ E+ ++ L L K +T+ + ++ Sbjct: 119 QYLQENELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + IDV + +LR K+ K I T+ G GY Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEGYELK-LIHTIRGLGY 217 >gi|261855398|ref|YP_003262681.1| transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261835867|gb|ACX95634.1| two component transcriptional regulator, winged helix family [Halothiobacillus neapolitanus c2] Length = 226 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD A + L+ +V G DG+ L E+DA+I+D L + G Sbjct: 1 MKLLLVEDDVQAATYLAKGLEESGHSVDRAANGTDGLHLAMTGEYDALIVDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++ A R A +TPV ILS ++D+V GL++G DDY++KP+ EL+ARI A+ RR Sbjct: 61 GLIAAYRAAGRATPVLILSARGEVDDRVTGLKAGGDDYLTKPYAFSELLARIEALTRRMQ 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +R + +L V DL ++ V + I L +E+++++ L +T+ M L + Sbjct: 121 TRDSSDTLAV-ADLVLDRVRHKVMRRDQPILLQPREFRLLDYLMRHAGQVVTRTMLLEQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +P+ +IDV I +LR K+ + TV G GYVL + Sbjct: 180 WGYHFDPQTNVIDVHISRLRSKIDRDF-DTPLLHTVRGAGYVLSD 223 >gi|188588682|ref|YP_001919802.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|188498963|gb|ACD52099.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] Length = 231 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 14/232 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D++++ + I++ L EN+ V + G D I L K D I+LDL L D GF Sbjct: 1 MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV+ + P+ ILS + +K+ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 EVIHEFQSINSEVPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + +I G + + + + V + + T E+++I L+ Sbjct: 121 KAKAIGKNEIKNKTNDIIEKGFIKIIVPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 T+E L+ ++ + +D+ I ++R+KL G ++ I+T++G GY L Sbjct: 181 TREELLDKIWGYSFVGNTRAVDIHIKRIRQKL---IGNEDVIKTIYGVGYRL 229 >gi|154506203|ref|ZP_02042941.1| hypothetical protein RUMGNA_03745 [Ruminococcus gnavus ATCC 29149] gi|210612116|ref|ZP_03289175.1| hypothetical protein CLONEX_01374 [Clostridium nexile DSM 1787] gi|225027853|ref|ZP_03717045.1| hypothetical protein EUBHAL_02113 [Eubacterium hallii DSM 3353] gi|257414190|ref|ZP_04745516.2| subtilin biosynthesis regulatory protein SpaR [Roseburia intestinalis L1-82] gi|153793702|gb|EDN76122.1| hypothetical protein RUMGNA_03745 [Ruminococcus gnavus ATCC 29149] gi|210151719|gb|EEA82726.1| hypothetical protein CLONEX_01374 [Clostridium nexile DSM 1787] gi|224954800|gb|EEG36009.1| hypothetical protein EUBHAL_02113 [Eubacterium hallii DSM 3353] gi|257200898|gb|EEU99182.1| subtilin biosynthesis regulatory protein SpaR [Roseburia intestinalis L1-82] Length = 245 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59 +IL+++DDK L ++++ N Y T DG+E + D I+LD+ + + G Sbjct: 25 KILVVDDDKEL---VKMLCSYFNMKQYETITATDGMEALNKIKMKPDIILLDINMPRMDG 81 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R +K+ P+ L+ +DK+ GL SG DDYI+KPF+ EL ARI ++R Sbjct: 82 IEVCRLIR-SKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKRE 140 Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H Q ++ ++ K V + GHR+ T EYQ+IE LS+ KE Sbjct: 141 ERHQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYAQ 200 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + I + ++RKK+++ + K YIETVWG GY Sbjct: 201 VCGYDAEGDSRTITELVRRIRKKIADYS-EKEYIETVWGIGY 241 >gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580] gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580] gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] Length = 235 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 8/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A +E LK E + V+ G + +++ + D I+LD+ L + G E Sbjct: 4 KILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVEDLNPDMILLDIMLPNKDGVE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 64 VCREVR-KKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQNT 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A + I G L + DA V + I LT +E++++ L+ +T+E Sbjct: 123 AAPAEEESSSNEIQIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 L ++ +V+ +DV + +LR+K+ + ++I T G GY LR +D Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQD 235 >gi|323340909|ref|ZP_08081158.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|323091571|gb|EFZ34194.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 235 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 126/229 (55%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++V+ GE+ ++ + D IILDL L I G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYDVHTAYDGEEALKQVEEVSPDLIILDLMLPKIDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ + DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VAREVRKTH-DMPIIMVTAKDAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQAA 121 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A S I G L+++ +A V G +I LT +E++++ L+ +T+E Sbjct: 122 VANATPEEEKSSDIEIGSLTIHPEAYVVSKNGEKIELTHREFELLYYLAKHIGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYLR 230 >gi|297156215|gb|ADI05927.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 125/219 (57%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +++ L++ + V V G G+ + + + AI+LD+ L + G+ Sbjct: 1 MRLLVVEDEEGLAIALKRGLEAAGYAVDVAHDGLIGLHMARQNPYQAIVLDIMLPGLNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LR I TP+ +L+ + D+ L +GADD+++KPF+ L AR+RA++RR Sbjct: 61 RVCARLRAEDIETPILMLTAKNGEYDEAEALDTGADDFLAKPFSYVVLEARLRALLRRGG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++++ GDL ++ ++ + LT KE+ ++E L+ R + K ++ ++ Sbjct: 121 ARTRTVLRIGDLWIDPAGRSSGRGDVQFRLTAKEFAVLECLARRAGEVVPKIDIVDQVWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E ++ I++V++ LR+K+ G+ IETV G GY Sbjct: 181 ADFEGDLNIVEVYVSALRRKIDTPF-GRASIETVRGIGY 218 >gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 230 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD ++A L+ + F + G +G+ +FD I+LDL L I G+E Sbjct: 4 KILIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLPGIDGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120 + R +R K P+ +++ DK+RGL GADDYISKPF+ ELVAR++A + + R Sbjct: 64 ICRKIR-GKTEVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYER 122 Query: 121 GHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S++ + G + +N V + H + KEY+++ L + +KE Sbjct: 123 LTTGSVVRSEEVQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++K + V I +LR+K+ YI+TVWG GY Sbjct: 183 ERIWGMDAIGDLKTVAVHINRLREKIEKDPQNPVYIQTVWGSGY 226 >gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC 17982] gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC 17982] Length = 227 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 4/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E + V G + + + D ++LD+ L + GF+ Sbjct: 4 RILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQFQEHNPDLVLLDVMLPGMDGFD 63 Query: 62 VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119 V RA+R ++S P+ +L+ S D V GL++GADDY+ KPF +ELVAR+RA +R R Sbjct: 64 VCRAIR--RVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRE 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + DLS+++ V+ +G I LT E+ ++ L+ ++E L ++ Sbjct: 122 DSQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 182 GYRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGY 221 >gi|297571966|ref|YP_003697740.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932313|gb|ADH93121.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 224 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 122/219 (55%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD ++ + ++L+SE ++V V G + + L + D ++LD+ L + G Sbjct: 1 MRILVVDDDPGISEMVAILLESEGYDVSVCANGSNVVPLFRAEHPDLVLLDVMLPGLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R LR + P+ ++S + D + GL++GADDY++KPF L+AR++ +RR Sbjct: 61 SVCRLLR-EESDVPIIMMSAKTDSLDVIAGLEAGADDYVTKPFENSVLLARVKVRLRRQE 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ L V DLS++L A V+ +HLT E+ ++ +L+ + ++E L ++ Sbjct: 120 NESEILKV-ADLSIDLKAHEVKRGHETVHLTPLEFDLLTVLARKPYQVFSREELLEQVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V I +LR K+ + TV G GY Sbjct: 179 YRHSADTRLVNVHIQRLRAKVERDPENPGVVLTVRGVGY 217 >gi|326791336|ref|YP_004309157.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326542100|gb|ADZ83959.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 237 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ + + I L + + G++ + + + D I+LDLGL D+ G EV Sbjct: 6 ILIVEDEQNICNFIATTLNAHEYKTLRCQTGKEALAIIPSHCPDLILLDLGLPDMDGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 L ++R STP+ ++S S +KV+ L GADDYI+KPF EL+ARIR +R S Sbjct: 66 LTSVREWS-STPIIVISARSQEAEKVQALDLGADDYITKPFGTSELLARIRTAIRHSLKI 124 Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 ++ DL+++ D + V ++HLT E+++I LL+ LT + + Sbjct: 125 SKTNQGANIFKASDLTIDYDKHMLLVGDEKVHLTQIEFKLISLLAQHAGKVLTYDYMIKK 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ +I+ V + +R+K+ G YI T G GY + E + T Sbjct: 185 IWGPYAGSNNQILRVNMANIRRKIEQNPGDPKYIFTEVGIGYRMIEEEGEST 236 >gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 232 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 5/229 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ LA ++ L+ E ++V V G G++ + + D ++LD+ L + GF V Sbjct: 4 VLIVEDETTLAETLRYNLEREGYSVIVAGDGVQGLDRARRDQPDLVVLDIMLPRLDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + P+ +L+ D++ GL+ GADDY+ KPF+ E +AR+RAI+RRS Sbjct: 64 CRILR-QESDVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAILRRSERQ 122 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S++ G + V+ ++ G ++L KE+ ++ L + LT+++ L + Sbjct: 123 PHSIVREVLEAGAIRVDTSSRRAWRNGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + + + +DV I LR+K+ G YI+TV G GY + D Sbjct: 183 WGQDFIGDSRTVDVHIRWLREKIEPDPGKPVYIQTVRGVGYRFEPPSDD 231 >gi|261823721|ref|YP_003261827.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] gi|261607734|gb|ACX90220.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] Length = 220 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ + ++ L F + G+ G K +DA++LDL L + G Sbjct: 1 MRILLIEDDRLIGDGLKAGLTKLGFTIDWFTEGKAGAAALKAAPYDAVVLDLSLPGMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R A PV IL+ ++E +V GLQ GADDY+ KPF E+ AR++A++RR Sbjct: 61 DILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRRRH 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G Q + G +S+ +++V + + L +E ++EL L N LT+ LY Sbjct: 121 GQLQPELTHGSVSLEPGSRSVTLNCEPLILKSRELALLELFLLNPNRVLTRAQLEEKLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ ++V I LRKKL G +I TV G GY+L Sbjct: 181 WDDDVSSNAVEVHIHHLRKKL-----GSGFIRTVHGIGYIL 216 >gi|240850128|ref|YP_002971521.1| two-component response regulator [Bartonella grahamii as4aup] gi|240267251|gb|ACS50839.1| two-component response regulator [Bartonella grahamii as4aup] Length = 228 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 10/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD H +E +V V G+ G L +D +++D L G Sbjct: 1 MKILVIEDDHETGHYLEKAFLEVGHSVDVAYDGDTGYALATTENYDVMVVDRMLLHRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR TPV ILS + + D+V GL++G DDY++KP+ EL+AR+ + RR Sbjct: 61 SIIAELRAKGNETPVLILSALGQVNDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ G+L ++ A TV+ I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDRNILLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222 D +P+ +IDV I +LR K+ K++ + TV G GY+L+ Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDVPLLHTVRGAGYMLK 222 >gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] Length = 239 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + G+ Sbjct: 11 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 70 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R AK P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 71 EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 129 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++S + G + ++ + +TV V G ++ LT KE+ ++ LL+ E Sbjct: 130 TLNQPKVAESKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVEN 189 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ + V I LRKKL I+TVWG GY Sbjct: 190 IFQHVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 237 >gi|229169569|ref|ZP_04297273.1| Two-component response regulator [Bacillus cereus AH621] gi|228613959|gb|EEK71080.1| Two-component response regulator [Bacillus cereus AH621] Length = 242 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 125/224 (55%), Gaps = 9/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+E+ + + I+LD+ + I G + Sbjct: 15 ILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVRKRDVHLIVLDIMMPKIDGIHM 74 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++V +I+ P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 75 --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++ GD+ +N+ + V + + LT +E++++ELL+ + L E Sbjct: 133 MSGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIY 192 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I K+R+K+ YI+T+WG GY Sbjct: 193 ERVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGY 236 >gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 243 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 126/229 (55%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ +E L ++V GE+ +E+ + + D ++LD+ + + G+ Sbjct: 8 RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQDPDLVVLDVMMPKLDGYG 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 V + LR + P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 68 VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 H + +I GDL ++ + + V + RI LTG E+ ++ELL R ++ L Sbjct: 127 SSHEGIPSSGVIQVGDLRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 186 Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E V +++DV I +LR KL + I T G GY+ + Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 235 >gi|325275490|ref|ZP_08141410.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099375|gb|EGB97301.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 227 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD +A I L ++ V + + +FD ++LDLGL D G Sbjct: 1 MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR LR + PV +L+ ++ D+V GLQ+GADDY+ KPF+ EL AR+ ++RR Sbjct: 61 KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A ++I G L + + + G ++ L+ +E +++ L L+ E + +Y Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQQVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL N +ETV G GY L Sbjct: 181 FSDEVESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216 >gi|268319761|ref|YP_003293417.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|262398136|emb|CAX67150.1| two-component system response regulator [Lactobacillus johnsonii FI9785] Length = 236 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 19/233 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 ++IL++EDD ++A +++ E ++V D+ +DG+E + ++ +D + LDL L Sbjct: 2 LKILMVEDDNSVAEMMKMFFSKEQWDV---DIAKDGVEAVEMFKKAPDSYDIVTLDLNLP 58 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 G EV + +R +S P+ +L+ S D++ GL GAD+Y++KPF+ L+ARI+A+ Sbjct: 59 KKDGMEVAKEIRAISLSIPIIMLTARDSESDQILGLGIGADEYVTKPFSPLALIARIKAL 118 Query: 116 VRRSR----GHAQSLI----VTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166 RRS HA + I VT L ++ D + V + LT KE+ ++ ++ + Sbjct: 119 YRRSHLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPK 178 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ L ++ E + +D I KLR+KL A G ++TVWG GY Sbjct: 179 QVFSRDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGY 229 >gi|227524257|ref|ZP_03954306.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088488|gb|EEI23800.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 245 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 25/248 (10%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-----EFDAIILDLGLT 55 M++L+IED+K+++ + + + E ++V DGIE + +D I LDL L Sbjct: 1 MKLLMIEDNKSVSEMMSMFFQKEGWDV---SFAYDGIEAVDMFNEDPESWDMITLDLNLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 G EV + +R S P+ +L+ S D+V G + GADDY++KPF+ LVARI+A+ Sbjct: 58 KKDGMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKAL 117 Query: 116 VRRSRGHAQSL--------------IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIEL 160 RR+ AQ I T +N + + + G I LT KE++++ Sbjct: 118 QRRAHTEAQVEEPEHSEEEQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNA 177 Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 L+ + ++E L ++ + + +D I KLR+K+ G I+TVWG GY Sbjct: 178 LAQKPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERV--GPQVIQTVWGVGYK 235 Query: 221 LRENAKDE 228 ++ D+ Sbjct: 236 FDDSEVDK 243 >gi|170741724|ref|YP_001770379.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168195998|gb|ACA17945.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 230 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 6/231 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLI+DD+ LA + L +E + V +G + + FDA+ILD+ L D GFE Sbjct: 4 RLLLIDDDRRLAAMVAEYLSAEGYAVACQPTAREGHDALRRERFDAVILDVMLPDGDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R P+ +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR R Sbjct: 64 LCRQIRTHS-RVPILMLTAKGEDTDRIIGLEIGADDYLPKPFNPRELLARIRALLRRQRA 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ + G L ++ ++ V + G LT ++ ++ + L++E ++ L G Sbjct: 123 PQEARLDFGRLQIDPGSRVVRLDGVERRLTSHQFDLLLAFATHAGRVLSRERLMD-LVKG 181 Query: 182 RD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 D + + IDV + +LR + + + T+ G GYV A+++ E Sbjct: 182 EDLDAFDRSIDVHVSRLRALIEDDPRHPRRLLTIRGAGYVF---AREQDAE 229 >gi|124003241|ref|ZP_01688091.1| RprY [Microscilla marina ATCC 23134] gi|123991339|gb|EAY30770.1| RprY [Microscilla marina ATCC 23134] Length = 236 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL+EDD L + ++ L+ ENF+V++ GE G E + +D +LD+ + GF Sbjct: 7 IRVLLVEDDLNLGNLLQDYLEMENFDVHLCRDGEAGFEAFEAGTYDICLLDVMMPKKDGF 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + ++ + P+ L+ S EDK+ G GADDYI+KPF++EELV RI A+++R++ Sbjct: 67 TLAKQIKEKNQAVPILFLTAKSLKEDKINGFTIGADDYITKPFDEEELVLRIHAVLKRTQ 126 Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G + ++ G + + + + +T +E +++ LL L KN L +E Sbjct: 127 GDPMAQKNDETKFKIGKYTFDYANHALSIDDDVRRITKRESEILRLLYLYKNRILKREEA 186 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ D + DVFI KLRK L + K IE V G G++L Sbjct: 187 LVSIWGENDYFHGRSFDVFITKLRKYLKKDSNVK--IENVHGVGFML 231 >gi|104783276|ref|YP_609774.1| DNA-binding response regulator TctD [Pseudomonas entomophila L48] gi|95112263|emb|CAK16990.1| putative DNA-binding response regulator TctD [Pseudomonas entomophila L48] Length = 223 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED LA S+ LKS+ V V G ++ +LD+GL + GF Sbjct: 1 MRVLLVEDHLQLAESVAQALKSQGLTVDVLHDGVAADLALASEDYAVAVLDVGLPRLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR + PV +L+ S ++D+V GL GADDY++KPF EL AR++A++RRS Sbjct: 61 EVLARLRGRGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L +LD + + + LT +E ++E L R ++KE ++ Sbjct: 121 LGGERQQRCGPLVYDLDTRRFTLGDEPLTLTQREQSVLEALIARPGRVMSKEQLAAQVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E I+++I +LRKKL G I T G GY+L Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GHPVAIVTFRGLGYLL 218 >gi|116493445|ref|YP_805180.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103595|gb|ABJ68738.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 229 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + +++ +K+E + G++ + +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALSKLRTDPDISLMILDIMMPEMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V+R +R S P+ +LS + DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MQVVREVR-KDSSLPILMLSAKTDDMDKIKGLLTGADDYVAKPFNPLEVMARVKSLLRRS 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ G L +N D+ V + G + LT E+ ++ LL+ N + + Sbjct: 120 EKDMTADEPEILDIGSLIINSDSHEVRTLAGKDVQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG+ IETVWG GY Sbjct: 180 FERVWQQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGY 224 >gi|302527275|ref|ZP_07279617.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302436170|gb|EFL07986.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 226 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 3/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL+EDD ++ ++ L L + V GED + + + D ++LDL L + G Sbjct: 3 VRVLLVEDDALISEALSLALADQGCAVTQAASGEDALAMLESVSVDVVLLDLMLPGMDGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V LRV + PV I++ + +D + GL++GADDY++KP EL ARIRA++RR+ Sbjct: 63 SVCHELRV-RGDLPVIIITARADSQDVIAGLEAGADDYVTKPLVAGELAARIRALLRRAA 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL ++ +TV G +I LT E++++ L+ + +T+E L+ ++ Sbjct: 122 PVRRCCLQVGDLLLSTHDETVSRHGVQILLTRTEFRLLAELAAAEGEVVTREQLLHRIW- 180 Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 GRD +++DV I +LR+K+ + TV G GY Sbjct: 181 GRDYFGGTRLLDVHIRRLRRKVEPDPDCPRLVLTVRGIGY 220 >gi|170757153|ref|YP_001780676.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122365|gb|ACA46201.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 233 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D++ + ++ L+ E++ V GE+ I+L K F IILDL L + G Sbjct: 5 FKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGE 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV +R + + P+ +L+ EDK+ GL GADDY++KPF+ +LVAR++A++RR+ Sbjct: 65 EVCSKIRESS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRKLVARVKALIRRAY 123 Query: 120 RGH---AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RG A+ LI+ GDL V++ V G + LT E++++ L T+E + Sbjct: 124 RGKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLV 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 184 EQAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 227 >gi|117618227|ref|YP_854835.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559634|gb|ABK36582.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 239 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 12/238 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD L +E L + F V GE L F ++LDL L G Sbjct: 6 KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R LR A PV +L+ D++ GL+ GADDY+ KPFN EL+ARIRA++RR Sbjct: 66 ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 125 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A+ ++ G +NL + + G + LT E+ ++++L L+++ Sbjct: 126 ELPGAPSTAEKVVSFGSYQLNLATRELSRDGDPVALTSGEFAVLKVLVSHPREPLSRDKL 185 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 +N L GR+ + IDV + +LR+ L Y++TVWG GYV D CE Sbjct: 186 MN-LARGREYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVF---VPDGDCE 239 >gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] Length = 255 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE +EL D I+LD+ L + GF V Sbjct: 15 VLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDGFAV 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR RG Sbjct: 75 CRRLR-AESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 133 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +A Q ++ G+L V+ + + V RI+LT E+ ++ELL + + Sbjct: 134 NAVVESRELPTGQGVLCLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 193 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 194 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 243 >gi|86750553|ref|YP_487049.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573581|gb|ABD08138.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 241 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 127/230 (55%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L+IEDD+ S + ++K+ +V DL GE+G+ L ++D +++D L Sbjct: 16 MRLLIIEDDR---ESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVIDRMLPKR 72 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G V+ LR TP ILS + ++D+++GL++G DDY+ KP+ EL+AR+ + R Sbjct: 73 DGLSVIGTLRDKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSR 132 Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R G A ++ GDL ++ + V + L +E++++E L +T+ M L Sbjct: 133 RHGGPAEETSYRVGDLELDRLSHRVTRGSEELTLQPREFRLLEYLMKHAGQVVTRTMLLE 192 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++D +P+ +IDV I +LR K+ + + T+ G GY++R+ + Sbjct: 193 NVWDYHFDPQTNVIDVHISRLRGKIDKGF-DRPLLHTIRGAGYMIRDGIR 241 >gi|206976925|ref|ZP_03237827.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206744891|gb|EDZ56296.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 223 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++++ + V V G + LT +E+ + +L ++ L Sbjct: 119 KKKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL ++ YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGSSG---EYIKTIYGVGYKL 221 >gi|148271879|ref|YP_001221440.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829809|emb|CAN00728.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 222 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 7/219 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD A+ ++ L +E F V G D E K + D ++LD L G + Sbjct: 6 RVLVVEDDAAIRAAVVSTLTAERFVVRGLASGVDLEEEVKGFLPDLVVLDWMLPGPSGIQ 65 Query: 62 VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + A R+ + S V +L+ ++ED++RG G DDYI KPF ELVAR+ A++RR R Sbjct: 66 L--AERIRRWSDASVIMLTARDAVEDRLRGFGQGVDDYIVKPFALAELVARVGAVLRR-R 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G S++ GDL V+ D+ G ++ LT E+Q++ L+ + TL+K L ++ Sbjct: 123 GRLASVVEIGDLLVDPDSGLARRGGEQLELTSIEFQLLAYLAAHRGRTLSKTQLLTQVW- 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 G D+ + +++V I LRKK+ A G + TV G GY Sbjct: 182 GYDQTDPNLVEVHISALRKKME--ARGPRLLHTVRGLGY 218 >gi|66048024|ref|YP_237865.1| heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|63258731|gb|AAY39827.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|330972950|gb|EGH73016.1| heavy metal response regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 224 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYVVDIANTGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR ++T + +++ +E+KV+GL+ GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 EVLSRLR-KTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220 >gi|328479685|gb|EGF48847.1| OmpR family DNA-binding response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 225 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA +EL LK E + V G G+E ++DAI+LDL L ++ G E Sbjct: 3 KILIIEDEKNLARFVELELKHEGYETEVHFNGRTGLEAALAEDWDAILLDLMLPELNGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AI 115 V R +R K +TP+ +++ S+ D+V GL GADDYI KPF EEL+AR+R +I Sbjct: 63 VCRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRISI 121 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+ I DL + + + V I LT +EY+++ L N L +++ L Sbjct: 122 EGENNTAKQTTIKYRDLVIEKENRVVRRGDDIIELTKREYELLLTLMENVNVVLARDVLL 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + ++ + E ++DV++ +R K+ + G +YI+TV G GYV Sbjct: 182 SKVWGYNSDVETNVVDVYVRYIRNKI-DRPGEPSYIQTVRGTGYV 225 >gi|326789158|ref|YP_004306979.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326539922|gb|ADZ81781.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 237 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 5/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A ++L L+ E ++V ++ G +G+ + +D +ILD+ L + G E Sbjct: 12 RILIIEDEVKIARFLQLELQHEGYDVNMSHDGREGLNMALENNYDLLILDVMLPSLNGME 71 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118 VLR +R S PV +L+ + DKV GL GA DYI+KPF EEL+ARIR + + Sbjct: 72 VLRRIRQVS-SLPVIMLTAKDDVMDKVMGLDLGAQDYITKPFAIEELLARIRVLFKLKAT 130 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ G L+++ + V + LT KE+++++ L L KN +T+E L + Sbjct: 131 TPTATPEVLKCGQLTLDPERYEVSYNNIPLALTKKEFELLQFLMLNKNLLITREQILEKV 190 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ++DV+I LR K+ K I TV G GY +++ Sbjct: 191 WGYDYLGDTNVVDVYIRYLRNKIDQRFEDK-LIYTVRGMGYQIKD 234 >gi|291560891|emb|CBL39691.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] Length = 224 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59 +IL+++DDK L ++++ N Y T DG+E + D I+LD+ + + G Sbjct: 4 KILVVDDDKEL---VKMLCSYFNMKQYETITATDGMEALNKIKMKPDIILLDINMPRMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R +K+ P+ L+ +DK+ GL SG DDYI+KPF+ EL ARI ++R Sbjct: 61 IEVCRLIR-SKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKRE 119 Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H Q ++ ++ K V + GHR+ T EYQ+IE LS+ KE Sbjct: 120 ERHQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFGKERIYAQ 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + I + ++RKK+++ + K YIETVWG GY Sbjct: 180 VCGYDAEGDSRTITELVRRIRKKIADYS-EKEYIETVWGIGY 220 >gi|229005191|ref|ZP_04162911.1| Sensor histidine kinase [Bacillus mycoides Rock1-4] gi|228756051|gb|EEM05376.1| Sensor histidine kinase [Bacillus mycoides Rock1-4] Length = 231 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+DDK + + + L++E + +Y G++ + + ++ D +ILD+ + G EV Sbjct: 6 ILIIDDDKEIVELLAVYLRNEGYCIYKAYDGDEALHMLSLHQIDLMILDIMMPKRNGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +LS + DK+ GL +GADDY+ KPFN EL+AR++A++RRS Sbjct: 66 CQQVREEN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSFQ 124 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + +I + ++ TV+V G I LT E+ ++ LL+ + E Sbjct: 125 QVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ K + V I LR+KL G+ I TVWG GY Sbjct: 185 RVWNEDGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGY 227 >gi|226323728|ref|ZP_03799246.1| hypothetical protein COPCOM_01503 [Coprococcus comes ATCC 27758] gi|225207912|gb|EEG90266.1| hypothetical protein COPCOM_01503 [Coprococcus comes ATCC 27758] Length = 228 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 3/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD A+ +E ++ S + G D + + K + FD I++D+ L D+ GFE Sbjct: 4 KILIVDDDPAICKLLEKVMHSNELETTTVNCGMDALSILKNHTFDLILMDIMLGDMEGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V++ LR ISTPV I+SG + D + GL GADDYI+KPF L A+++A++RR++ Sbjct: 64 VIKRLRNQGISTPVMIVSGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNKN 123 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + G S + G + L+ KE ++ L TK+M H+ Sbjct: 124 LVLDNSDTLECGPFSYDTTTMRFYKNGEELILSSKESALLLLFMKHPQQVFTKDMIYEHV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + I V+I +LR K+ + YI T+ G GY Sbjct: 184 WGNTVAVDDNAIMVYINRLRGKIEDDRQNPAYILTIRGLGY 224 >gi|220904946|ref|YP_002480258.1| winged helix family two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869245|gb|ACL49580.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 247 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDDKA+ + L+S G + I D I+LDLGL D+ G + Sbjct: 15 RILVIEDDKAIRALVTAALESRAMACITAGTGREAIAEASRAGPDVILLDLGLPDMDGTD 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---RR 118 ++R +R + P+ +LS S +DKV L +GADDY++KPF+ +EL+AR+RA + R Sbjct: 75 IIRTVRQWSM-VPIIVLSARSEDDDKVAALDAGADDYLTKPFSIDELLARLRAALRRGRY 133 Query: 119 SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RG+ S G L ++ A + V G IHL EY+++ LL+ LT + L Sbjct: 134 ERGNPDRDASFFENGPLRIDFAAGSASVNGQEIHLAPMEYKLLCLLARNAGKVLTHKTIL 193 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + VF+ LRKKL NAA +YI T G GY Sbjct: 194 QAVWGSSLPQNLPSLRVFMATLRKKLENAAPRCDYIHTHVGVGY 237 >gi|218438697|ref|YP_002377026.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218171425|gb|ACK70158.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 597 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIEDD ++ I L + + V + GE G+E ++ I+LD+ + + G Sbjct: 1 MKILLIEDDPFISQLISTKLIANRYTVDLVTDGELGLEFALMGKYSLILLDVIIPILDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR + TP+ +L+ +S ED + GL +GADDY++KPF+ E+L+ARIRA++RR Sbjct: 61 SLCHQLRDSGCETPIIMLTAKNSDEDVITGLDAGADDYVTKPFDVEQLLARIRALIRRQD 120 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 S++ G L + V Q I+L+ KEY ++EL ++ ++ L+ Sbjct: 121 IKRFPSILTWGALQFDPILIKVTYQDQVINLSPKEYSILELFLRHPQRIFSRSDIIDRLW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + P + I LR+KL+ A + IET++ GY L+ Sbjct: 181 MIDESPTEAAVTNLIKDLRRKLTAAGMKEELIETIYKLGYRLK 223 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++++++DD ++ +L+ V + ++ D ++LDL + G E Sbjct: 477 KVMIVDDDPIFLKTLMALLQPWELQVTTLSKSDRFWQVLTTTNPDVLLLDLEMPTFNGLE 536 Query: 62 VLRALRV-AKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R +R +K + P+ +++ + + +GADD+ISKP E++AR+ + RS Sbjct: 537 LCRVVRQDSKYNHLPIVVVTAHTDDNSIQQVFAAGADDFISKPITDSEVLARVINQIERS 596 Query: 120 R 120 R Sbjct: 597 R 597 >gi|324999757|ref|ZP_08120869.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 251 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 116/219 (52%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR++++ED+ A+A ++ L+ + V V G++G E +D +LD L G Sbjct: 20 MRVIVVEDEPAMADAVARGLRRDGIAVDVAYDGDEGSEKLSVTRYDVAVLDRDLPGRSGD 79 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ L A T V +L+ ++ DKV GL GADDY++KPF+ ELVAR+RA+ RR+ Sbjct: 80 ELCDELVAAGGLTRVLMLTASGTLADKVEGLSRGADDYLAKPFDFPELVARVRALGRRAT 139 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL ++ +TV G + LT KE+ ++E+L ++ E L ++D Sbjct: 140 PAVPPTLAAGDLVLDPARRTVGRSGRPVELTRKEFGVLEVLLAAGGAVVSSEELLERVWD 199 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P + V + LRKKL A I+TV G GY Sbjct: 200 ENADPFTTTVRVTVMTLRKKLGEPA----LIDTVVGAGY 234 >gi|320449542|ref|YP_004201638.1| two-component response regulator [Thermus scotoductus SA-01] gi|320149711|gb|ADW21089.1| two-component response regulator [Thermus scotoductus SA-01] Length = 224 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 121/219 (55%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60 RILL+EDD + ++ L+ E V G + + + + + D ++LD GL D+ G Sbjct: 3 RILLVEDDPQVGELVKRFLEKEGLLVVWARTGREALKQAWEGTKPDLVVLDRGLPDLEGL 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL++LR PV +L+G + + +V GL GADDY+ KPF+ +EL+ARI+A++RRS Sbjct: 63 EVLKSLRDLDPLLPVLLLTGKADEDSRVEGLLEGADDYLGKPFSLKELLARIKALLRRSG 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G L ++L+A+ + G + L+ E ++ +L+ T+E L ++ Sbjct: 123 KEGRRYF--GPLELDLEARKAYLDGQPLKLSATEANLLFVLAQTPGRVYTREELLERVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E +++D +I LRKKL + +IETV G GY Sbjct: 181 PEFEGSERVVDAYIRLLRKKLKDDPQAPRFIETVVGMGY 219 >gi|302536872|ref|ZP_07289214.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302445767|gb|EFL17583.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 246 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 19/235 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD+ +A +I L++E F V G + + ++ + ++LD+ L G E Sbjct: 20 RVLVVEDDRTIADAIAARLRAEGFQVQTAYDGPAAVAAAESWQPELLVLDVMLPGFDGLE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R ++ A+ PV +L+ D + GL GADDY++KPF+ EL AR+ ++RR Sbjct: 80 VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 RG L GDL ++ + V VQ +HLT E+ ++ L+ L++ Sbjct: 139 ATLAATAPRGATLRL---GDLEIDHAQRRVRVQAEDVHLTPTEFDLLVCLAGTPRAVLSR 195 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 E L ++D D + +D I LR+K+ G + I TV G GY L A+ Sbjct: 196 EQLLAEVWDWADASGTRTVDSHIKALRRKI-----GADRIRTVHGVGYALETPAQ 245 >gi|271964343|ref|YP_003338539.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507518|gb|ACZ85796.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 228 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 11/226 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD + ++ L V G G+ D ++LDLGL D+ G E Sbjct: 3 QLLLVEDDAQVRSALTRALTERGHAVASASAGMPGLTRAVADRPDLVVLDLGLPDLDGCE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 VLR LR A + PV + + + VR L +GADDY+ KPF+ L ARIRA++RR R Sbjct: 63 VLRMLR-AVSAVPVIVATARDDEPEIVRALDAGADDYVVKPFSAAHLDARIRAVLRRGRD 121 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 + +V G L + A+ + G + LT KE+ ++ L++R ++K L + Sbjct: 122 ADEGTAPVVVGGLHIEPAAREATLDGTPLGLTPKEFDLLHYLAVRPGQVVSKRELLTEVW 181 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y G D K +DV + LR+KL +A +Y++TV G G L Sbjct: 182 RMAYGGAD----KTVDVHLSWLRRKLGESAQRPHYLQTVHGVGVKL 223 >gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621] gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621] Length = 237 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 14/229 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57 +RIL+ +DDK + ++ L+ E +Y+ D +G E LC F + ++ +ILDL + + Sbjct: 4 IRILIADDDKEIRDLLKRYLERE---LYMVDTAINGEEALCLFNQNNYNLVILDLMMPKV 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++R Sbjct: 61 DGIEVCRKLR-DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMR 119 Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R + ++ + L+++ TV G I+LTGKE ++++ + T Sbjct: 120 RFLVLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFT 179 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +++D + + V I KLRKK+ + +I+TVWG GY Sbjct: 180 KTQIFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGY 228 >gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] Length = 222 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 126/223 (56%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD ++ I L +E +NV + G +GI+ K +D IILD+ + ++ G+ V Sbjct: 5 ILVIEDDASIQDLITEFLSAEGYNVDAANDGIEGIQKFKENNYDLIILDIMMPNLDGYGV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 + +R S P+ L+ ++ D+++G + DDYI+KPF+ LV R+ AI+RRS + Sbjct: 65 CKMIRKTS-SVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAILRRSNKT 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + I L +NLD + E+ G I LT KE+ +++ L + +T+E L+ ++ Sbjct: 124 ISDNFITFEKLKLNLDTYSAEIDGDVIELTLKEFNILKELIEKYPQVITRESLLDSIWGY 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + +I+D I +RKK++ YI+TV G GY L +N Sbjct: 184 DYYGDTRIVDAHIKNIRKKITLP-----YIKTVKGIGYTLDKN 221 >gi|117921622|ref|YP_870814.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117613954|gb|ABK49408.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 237 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 12/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD LA+ I LKS +V V G+ + Y+ D I+LD+ L + G Sbjct: 9 RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGLDGLS 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + L + P+ ++S + S ED+++GL+ GADDY+ KP + LVARI ++RR Sbjct: 69 LCEKLP-DYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQNQ 127 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 Q+ + G LS++ + + + LT E++++ LL+ + L++ ++ Sbjct: 128 PPQAESHCLTFGKLSIDPHTHAIRLDNKEVDLTSHEFELLWLLASQAGQVLSRQYIYQLL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LN +DG+D + IDV I +LRKKL++ I+TVWG+GY+ A Sbjct: 188 LNIDFDGKD----RKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLFAPEA 234 >gi|309780386|ref|ZP_07675137.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|308921089|gb|EFP66735.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 236 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 15/237 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+A+A I L V+V G E D +ILDLGL I G Sbjct: 1 MRILLIEDDRAIASGIHAGLTQAGHRVHVVHDGVFATEQLTRQTHDLVILDLGLPGIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +L R TPV IL+ + DKV GL +GADDY+ KPF ELVAR+ A++RR Sbjct: 61 TLLSQFRARDRVTPVLILTARDGLLDKVNGLNAGADDYLLKPFEMLELVARVGALLRRRG 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + A+ I+ G L ++ + + V + L+ +E+ ++ELL LR+ ++K + Sbjct: 121 DPTEPAARPDILVGRLRMSGVERRIFVDAAPLELSPREFAVLELLMLRQGRVVSKVQLQD 180 Query: 177 HLYD-----GRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 HL G +V I+V++ ++R+K+ ++ + I TV G GY+L+ A Sbjct: 181 HLASFGHAIGEASHDVVGDTAIEVYVHRVRRKIEHS---EAEIVTVRGFGYLLQARA 234 >gi|228900485|ref|ZP_04064711.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 4222] gi|228964897|ref|ZP_04126002.1| Two-component response regulator vanR [Bacillus thuringiensis serovar sotto str. T04001] gi|228794835|gb|EEM42336.1| Two-component response regulator vanR [Bacillus thuringiensis serovar sotto str. T04001] gi|228859162|gb|EEN03596.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 4222] Length = 242 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRVR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G ++LT EY ++ L++ KN T E Sbjct: 135 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238 >gi|325684936|gb|EGD27080.1| response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 228 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DD + + + LK+E + G++ + +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNLSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S + DK++GL +GADDY+SKPFN E++AR+R+++RRS Sbjct: 61 IDVVKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L +N D+ V+ V+G I LT E+ ++ LL+ N + + Sbjct: 120 QKQVKEEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGY 224 >gi|302866110|ref|YP_003834747.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315502668|ref|YP_004081555.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302568969|gb|ADL45171.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315409287|gb|ADU07404.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 222 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I L+ V V G+ G E +D +ILD L + G Sbjct: 1 MRVLVVEDERNLADAIARGLRKRGMAVDVAYDGDAGHEAAFVTRYDVVILDRDLPGVHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L + T V +L+ ++ D+V GLQ GADDY++KPF +ELVAR++A+ RR+ Sbjct: 61 RICADLAASGALTRVLMLTASVTVADRVEGLQLGADDYLAKPFAFDELVARVQALGRRAT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A ++ DL ++ + V G + LT KE+ ++ L + ++ E L ++D Sbjct: 121 PAAPPVLEVADLVLDPARRVVSRGGVPLDLTNKEFGVLAELLKARGAVVSSEELLERVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P I+ V + LRKKL G I+TV G GY Sbjct: 181 ANTDPFTTIVRVTVMTLRKKL----GDPPLIDTVVGAGY 215 >gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 237 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI++IED+ + + L+ E + VY G +G + + Y+ D IILDL + G+E Sbjct: 4 RIVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVFQQYQPDLIILDLMMPKKDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +R + P+ +L+ D++ GL GADDY++KPF+ ELV R++ I+RR Sbjct: 64 LCEEIRQYS-NVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I DL ++ + V V GH I LT KE++++ +++ ++ Sbjct: 123 ATIQEKEPVSEMIEFLDLKIDPTKRRVFVCGHEIELTVKEFEVLYIMAKHPKQVFSRSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L +++ E + V + +LR+KL +I TVWG GY + +ET Sbjct: 183 LEQIWNFEYEGCTNAVTVLMSRLREKLEKHTTKNRWIHTVWGIGYRFEPDGGNET 237 >gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 233 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D++ + ++ L+ E + V GE+ I+L K F +ILDL L I G Sbjct: 5 FKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKISGE 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV +R + P+ +L+ EDK+ GL GADDY++KPF+ ELVAR++A++RR+ Sbjct: 65 EVCSKIREFS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAY 123 Query: 120 RGH---AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RG A+ LI+ GDL V++ V G + LT E++++ L T+E + Sbjct: 124 RGKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLV 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 184 EQAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 227 >gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 227 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 129/225 (57%), Gaps = 11/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYE--FDAIILDLGLTDIP 58 R+L++ED+ LA + +L+ E + V ++ EDG + L F++ D ++LDL L +P Sbjct: 3 RVLIVEDEPDLADPLAYLLRREGYEV---EIAEDGALALSAFHDRGADIVLLDLMLPGMP 59 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV R LR++ P+ +L+ S D V GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 60 GTEVCRQLRLSS-HVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVLRR 118 Query: 119 SRGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 L + G +++++D TV V G+ I++ KE++++E+L LT+ Sbjct: 119 RTPDDADLDDRILSGGRVTLDIDRHTVAVDGNEINMPLKEFELLEVLMRNAGRVLTRGQL 178 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ ++ + K +DV I ++R ++ + + TV G GY Sbjct: 179 IDRVWGTDYFGDTKTLDVHIKRIRSRIEQSPSEPAMLVTVRGLGY 223 >gi|323140432|ref|ZP_08075361.1| KDP operon transcriptional regulatory protein KdpE [Phascolarctobacterium sp. YIT 12067] gi|322415117|gb|EFY05907.1| KDP operon transcriptional regulatory protein KdpE [Phascolarctobacterium sp. YIT 12067] Length = 237 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 9/234 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL++ED+ + I+ L+ ++ V + G+ + Y D I+LDLGL D G Sbjct: 6 FKILIVEDEANILSFIKANLEISDYQVICAETCALGMMMYASYHPDLIVLDLGLPDRDGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R A + P+ +LS S DKV L GA+DYI+KPF EEL+ARIRA++R R Sbjct: 66 SLIQDVREAD-TVPIIVLSARSGEMDKVEALDLGANDYITKPFGTEELMARIRAVLRSHR 124 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G+ DL ++ D + V V G+ I LT EY ++ LS+ LT Sbjct: 125 YSEKNEGNHIGKFQFQDLMIDYDKRQVLVDGNEIDLTQTEYNILTFLSIHAGKVLTYAAI 184 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++ D VK + V + +RKK+ G K YI G GY R A+DE Sbjct: 185 IQAVWGYSDYGSVKKLQVNMKNIRKKMGVTPGEKRYIVNELGVGY--RMLAEDE 236 >gi|313498672|gb|ADR60038.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 230 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 21/232 (9%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL++DD+ L + L L E F GE+G L F ++LD+ L I G EV Sbjct: 4 VLLVDDDRELTEMLSLYLAREGFQATAAGTGEEGEPLALSGHFQVVVLDVMLPGISGIEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R A+ PV +L+ D++ GL+ GADDY+ KP + ELVAR+RAI+RR + Sbjct: 64 LRRVR-ARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRRVQPQ 122 Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFL 175 +T G L + + + LTG E+ ++E L+ + ++K+ + L Sbjct: 123 LMGEAITPEHVRSGALKMWPGRREAHWGDATLELTGSEFSLLEALARQAGQLISKQDLSL 182 Query: 176 NHL------YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 N L YD R IDV + +R KL A G ++I++V G GY+L Sbjct: 183 NALGRPLTRYDRR-------IDVHVSSIRHKLGPRADGSSWIQSVRGMGYML 227 >gi|297537805|ref|YP_003673574.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297257152|gb|ADI28997.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 226 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L +E + V V GE +L + E+D I+LDLGL + GF Sbjct: 1 MRLLLVEDDLILKDGLERSFVKSGYAVDVICDGEGANKLLTYQEYDVIVLDLGLPKLSGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL+ LR +TPV IL+ + +++V+GL GADDY++KPF EL AR+RA++RR Sbjct: 61 EVLKRLRARGSNTPVLILTALEDTQNRVKGLDLGADDYLTKPFELAELEARVRALIRRGV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I G L+ + + + L+ +E ++ELL L+ ++K + HL Sbjct: 121 SGGSAKISFGGLTFDTSNRQCMAGDIALSLSAREMALLELLMLKAAKVVSKTKIMEHLCS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V + +LRKKL+ I T+ G GY+L Sbjct: 181 WDEEISENAVEVIVSRLRKKLNVF---DIEIRTIRGLGYLL 218 >gi|257865841|ref|ZP_05645494.1| vancomycin response regulator [Enterococcus casseliflavus EC30] gi|257872176|ref|ZP_05651829.1| vancomycin response regulator [Enterococcus casseliflavus EC10] gi|257799775|gb|EEV28827.1| vancomycin response regulator [Enterococcus casseliflavus EC30] gi|257806340|gb|EEV35162.1| vancomycin response regulator [Enterococcus casseliflavus EC10] Length = 225 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+K ++ I L++ENF+V G + + F ILD+ L DI GF+ Sbjct: 3 KILLVEDEKEISDLIAFYLRNENFSVITCADGHEAQVQIEQNSFSLAILDVMLPDITGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + + +R K P+ +L+ S DK+ GL GADDYI+KPF E++AR++A +RRS Sbjct: 63 LCKIIR-KKHHYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRSTQ 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKEMFLNH 177 G Q+ ++ +L ++++ + +Q + LT E+ +++LL RK + ++EMF Sbjct: 122 YNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQEV 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + I V + LR+K+ + +YI+TVWG GY Sbjct: 182 WGEKYYTSSNNTIMVHVRNLREKMHDTHKKSSYIKTVWGIGY 223 >gi|269125937|ref|YP_003299307.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310895|gb|ACY97269.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 217 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I L+ + V V G +E E+D ++LD L + G Sbjct: 1 MRVLVVEDERVLADAIATGLRRQAHAVDVAYDGAGALERTSVNEYDVVVLDRDLPKVHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R L + + +L+ +ED+V GL GADDY++KPF ELVAR++A+ RR+ Sbjct: 61 DVCRDLAGRRYPARILMLTAAGDLEDRVAGLNLGADDYLAKPFAFAELVARVQALGRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ ++++ + V G I LT KE+ ++E+L + ++ E L +D Sbjct: 121 PPLPPVLERAGITLDPARREVHRDGRPIELTRKEFAVLEVLMRAEGAVVSSERLLEKAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++ V + LRKKL G IETV G GY L Sbjct: 181 EHIDPFTNVVRVTMMTLRKKL----GEPQVIETVPGVGYRL 217 >gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ LA ++ L+ E + V + G G++ + + D ++LD+ L + GF V Sbjct: 4 VLIVEDETTLAETLRYNLEREGYAVIIAGDGVQGLDRARRDQPDLVVLDIMLPRLDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR + P+ +L+ D++ GL+ GADDYISKPF+ E +AR+RAI+RRS Sbjct: 64 CRILR-QESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAILRRSERQ 122 Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S++ G + V+ ++ G ++L KE+ ++ L + LT+++ L + Sbjct: 123 PHSIVREVLEAGSIRVDASSRRAWRDGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + +DV I LR+K+ YI+TV G GY Sbjct: 183 WGQDFIGDSRTVDVHIRWLREKIEPDPSKPTYIQTVRGVGY 223 >gi|330719359|ref|ZP_08313959.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 232 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 126/228 (55%), Gaps = 6/228 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++A+ ++ L+ ++V + G ++L + ++DA++LDL L ++ G Sbjct: 3 RILVVDDEQAITTLLQFNLEQNGYHVTIAADGATALQLVEQEQYDAVLLDLMLPEVDGMS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VLR +R I PV +++ D++ GL+ GADDYI+KPF+ E++AR++A++RR Sbjct: 63 VLRQMRENSIRIPVILVTAKGDEFDRIFGLEIGADDYITKPFSPREVIARLKAVLRRYHE 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +R + DL ++ K V+ G + LT +EY+++ + R + +E L Sbjct: 123 QSTNRNDQVGYLTIQDLVIDDARKVVKKDGQTVILTPREYELLLYFAKRIGRVIDRETIL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + +++D+ I LR+K+ ++TV G GY + + Sbjct: 183 TSVWGYDFTGQSRMVDMHISNLREKIEKDPKHPTILKTVRGFGYTMSD 230 >gi|322434235|ref|YP_004216447.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321161962|gb|ADW67667.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 243 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 17/234 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + +++ SE + V V G + +C+ + A++LDL L I G ++ Sbjct: 4 ILVVEDDVRIQKALQRQFSSEGYAVRVVSEGTEAARVCREIKPVAVVLDLMLPGISGRDI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R ++ + TPV ILS +S + DKV L+ GADDY++KPF+ EL+AR++A +RR+ Sbjct: 64 CRQIKTDSVDTPVIILSAISEVADKVLLLEIGADDYVTKPFSPRELLARVQAAIRRAART 123 Query: 123 AQ-----------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165 + +L V G ++ +L V+ +G + LT E++++ Sbjct: 124 VEAQASAHAAGGAAADAEPALCVFGSVTADLLKMEVKREGVEVTLTAHEFKLLRYFLTHV 183 Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +T+E L ++ P +I+D + KLR+KL + TV G GY Sbjct: 184 DRVITREELLQDVWGYNFFPTTRIVDNQVLKLRQKLEADPAHPVHFRTVHGIGY 237 >gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator [uncultured prokaryote AT5] Length = 234 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++AL + L++E + V G++ L K D +ILD L + G E+ Sbjct: 6 ILIVEDEEALVLLLRYNLEAEGYGVETVARGDEADLLLKERSPDLVILDWMLPGLSGIEL 65 Query: 63 LRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 R LR A+ T P+ +L+ ++VRGL +GADDYI KPF+ EL AR+RA++RR+ Sbjct: 66 CRRLR-ARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRALLRRA 124 Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ GDL V+ + K V G + L EY+++E L R ++E LN + Sbjct: 125 LPERLADVLSFGDLEVDREKKRVSRAGRSVDLGPTEYRLLEFLMERPGRVFSREQLLNGV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + + + +DV + +LRK L N + I TV G GY L Sbjct: 185 WGSQIYIDERTVDVHVGRLRKAL-NRGHETDPIRTVRGAGYAL 226 >gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 238 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 127/226 (56%), Gaps = 10/226 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + + + L+ E + + GE+ +EL E+D I+LD+ + + G E+ Sbjct: 7 LLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEYDLILLDVMMPGMDGVEM 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + LR K +TPV +L+ ++V+G + GADDYI KPF+ E+V R++A++RR+ Sbjct: 67 CQELRKKK-ATPVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRRASAT 125 Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++V G L+++ DA V V I LT KEY+++ L+ + ++E Sbjct: 126 KFLQTDTQTKDVLVFGPLTIDNDAHRVTVDKTEISLTPKEYELLFYLAQSPDKVFSREQL 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGY 219 L +++ +++ +D + +LR+KL+ + I TVWG GY Sbjct: 186 LKDVWNYEFFGDLRTVDTHVKRLREKLNRVSPEVAAIISTVWGVGY 231 >gi|119855088|ref|YP_935693.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|145225906|ref|YP_001136560.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|119697806|gb|ABL94878.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|145218369|gb|ABP47772.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 246 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 12/229 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ LA + L+ E F+V + G D + + + D +ILDL L I G E Sbjct: 13 RALVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLALPGIDGVE 72 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + V +L+ + D + GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 73 VCRQLRTFSDAY-VVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRT 131 Query: 122 HAQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 A G LS+++ + V + + LT E+ ++ LS R + Sbjct: 132 VATPTSAATAADEPPPRAFGPLSIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFS 191 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L ++ ++DV I LR+KLS+ G Y+ TV G GY Sbjct: 192 RRQLLEAVWGDSWGGNKHLVDVHIGHLRRKLSDDPAGPRYVITVRGVGY 240 >gi|88860970|ref|ZP_01135605.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata D2] gi|88816898|gb|EAR26718.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata D2] Length = 245 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 135/239 (56%), Gaps = 21/239 (8%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD +LA I+ L+ +++ V V + G+ +++ + D +ILD L + G +V Sbjct: 11 ILLVEDDISLADWIKEYLEMKHYQVTVQERGDLAVQIIQEQNPDLVILDGMLPGLDGIDV 70 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AIV 116 L+A+R A +T + + + + D+V GL+ GADDY++KP L +IR I+ Sbjct: 71 LKAVRPAFANTIIMVTARDEEL-DEVLGLEMGADDYLTKPLRANVLSTKIRKHLERQTIM 129 Query: 117 RRSR------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +RS+ G + GD S++ A++VE+ + ++ E+ ++ LL+ R T+T Sbjct: 130 KRSQDIESEVGRSSDSFQYGDFSIDKQARSVELNNKIVDISSNEFDLLWLLAERAGNTVT 189 Query: 171 KEMFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + L YDG D + +D+ + KLRKKL++ I+TVWG+GY+L ++A Sbjct: 190 RDELIQALRGFDYDGFD----RTVDLIVSKLRKKLNDNPSKPYRIKTVWGKGYLLVKSA 244 >gi|299067888|emb|CBJ39101.1| putative response regulator, CheY family [Ralstonia solanacearum CMR15] Length = 232 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL+ EDD LA + L+ + V G +D +ILD+GL + Sbjct: 1 MRILIAEDDATLADGLTRSLRQAGYAVDRAADGAAADAALSAQTAQTYDLLILDVGLPRL 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL+ LR PV IL+ S++++V+GL GADDY++KPF EL AR+RA+VR Sbjct: 61 SGLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +L+ G L+ + + ++ + L+ +E ++E+L R ++KE ++H Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIRDQMVELSARELGLLEILLSRAGRLVSKEQLVDH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L +E I+V++ +LRKK+ I TV G GY L Sbjct: 181 LCGWGEEVSNNAIEVYVHRLRKKIEVDG---IRIATVRGLGYCL 221 >gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 235 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 119/220 (54%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ + +++ E F V++ G D ++ + + D +ILDL L G EV Sbjct: 18 VLIVDDEPQVRDLLQMGFSYEGFQVFLATNGPDATQVAQEQQPDVVILDLMLPGYDGLEV 77 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R LR ++ P+ +L+ I+D+V GL +GADDY++KPF EL+AR RA++RR + Sbjct: 78 TRRLRRSR-DLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRRRGNN 136 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 ++ +++N V I T +E+ ++E + L+++M ++ ++ Sbjct: 137 IADILTFQGITLNRGTHQVTFHDQPIDFTPREFDLLEFFLMNPRQALSRDMIMSRVWGYD 196 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + I++V+I LR+KL + ++TV G GY LR Sbjct: 197 YMGDDNIVEVYIRHLREKLHDTP--PRLLQTVRGVGYTLR 234 >gi|298248618|ref|ZP_06972423.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551277|gb|EFH85143.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 228 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 123/222 (55%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ L + ++ L E V G+ G+ + + AIILD+ L G Sbjct: 1 MRILIVEDNHQLNYELKQSLTYEGHAVDTAYDGDAGLAFAESAPYAAIILDVLLPVKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R LR + P+ +L+ +I+D+VRGL SGADDY+ KPF EL+AR+RA++RR+ Sbjct: 61 EVCRTLRARGYTVPILLLTARDAIDDRVRGLDSGADDYLVKPFALSELLARLRALLRRTS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL++ L V G +I LT + ++E L N L+ +M NH++ Sbjct: 121 PQKTPVLCVGDLTIELATHRVTRGGQQIELTTMLFTLLEYLMRHPNHILSHDMIANHIWS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 I+V+I +LR+K+ + K +ETV G GY LR Sbjct: 181 YDTPGTPNAIEVYIRRLRRKIDDPFEIK-LVETVRGAGYRLR 221 >gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 232 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 20/236 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60 ++L+IEDD + +++ ++L+++ + + GE+G++ KF FD +I+D+ + +I G Sbjct: 3 KLLIIEDDVTIRNALRILLENQGYFIEEAHDGEEGLQ--KFDSTFDLLIIDIMMPNISGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V R +R K P+ L+ S DK+ L +G DDY+ KPF+ EL+ARI+A++RR R Sbjct: 61 DVCRKIR-EKSYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCR 119 Query: 121 GH---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + A S I L+++ V G ++ LT KEYQ++ LL T + Sbjct: 120 VYDNADASDTTASSTIERCGLTLDTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFST 179 Query: 172 EMFLNHLYDGRDEPEVKI----IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++ +EP + I V I LR KL G + I+TVWG+GY E Sbjct: 180 QNIFESVW---NEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFEE 232 >gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407] gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407] gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC H10407] Length = 240 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD +A + L L+ E + + G + L + +DA++LDL L ++ G E Sbjct: 6 KILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQVWDAVLLDLMLPNVDGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R PV I+S +S ++ GL+ GADDY+ KPF+ +EL+AR++A+ RR Sbjct: 66 ICRRIRQMAGYLPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFRRQEA 125 Query: 122 HAQSLIVTGDL----SVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q++ + G L +++D A+ V + G I LT +E+ ++ + ++ L Sbjct: 126 MGQNIRLEGGLIRCHGLHIDPLAREVRLCGELIDLTPREFDLLYWFARHPGEVFSRLSLL 185 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + E ++ I +LR K+ + A I TVWG+GY Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRTKIEHDAAEPEIILTVWGKGY 229 >gi|239982355|ref|ZP_04704879.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291454200|ref|ZP_06593590.1| response regulator [Streptomyces albus J1074] gi|291357149|gb|EFE84051.1| response regulator [Streptomyces albus J1074] Length = 221 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/222 (36%), Positives = 126/222 (56%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+K LA S+ L +E + V V G +G+ +D ++LD+ L + G+ Sbjct: 1 MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGLEGLHRASESPYDLLVLDIMLPGMNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V ALR A P+ +L+ D+ GL +GADDY++KPF+ LVAR+RA++RR Sbjct: 61 RVCAALRAAGNDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRA 120 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G S + T G L V+ A+ V+ G + LT KE+ ++E L LR ++K L H++ Sbjct: 121 GAGASPVHTVGGLRVDTAARRVQRDGDEVALTAKEFAVLEQLVLRAGQVVSKADILEHVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + I++V+I LR+KL G I TV G GY L Sbjct: 181 DFAYDGDPNIVEVYISALRRKL-----GAQAIRTVRGMGYRL 217 >gi|257791289|ref|YP_003181895.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317490425|ref|ZP_07948908.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325831281|ref|ZP_08164573.1| transcriptional regulatory protein afsQ1 [Eggerthella sp. HGA1] gi|257475186|gb|ACV55506.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316910469|gb|EFV32095.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486882|gb|EGC89329.1| transcriptional regulatory protein afsQ1 [Eggerthella sp. HGA1] Length = 223 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD A+ S+ +L+SE + D + +EL + FD ++D+ L GF Sbjct: 1 MRMLLVEDDAAIVASLTDLLRSEGYETRCADGQDAAVELLRSERFDLALVDVALAQGNGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V A + + V L+ V GL GADDYI+KPF EL++RIR+++RR+ Sbjct: 61 AVCAAAKACDPAPAVIFLTASDDEFSTVAGLDMGADDYIAKPFRARELLSRIRSVLRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A SL+ GD+ ++ V G + LT EY+++ L + + +T+E N ++D Sbjct: 121 A-ASSLLRLGDVEIDAGTACVRKAGRDLALTALEYRLLLLFAQSRGKLVTREHVRNAIWD 179 Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + V++ +LR K+ + I TV G GY Sbjct: 180 SAGEYVSDNTLSVYVKRLRDKVEDDPAEPRLILTVRGLGY 219 >gi|207721946|ref|YP_002252384.1| response regulator protein [Ralstonia solanacearum MolK2] gi|206587118|emb|CAQ17702.1| response regulator protein [Ralstonia solanacearum MolK2] Length = 243 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 126/240 (52%), Gaps = 18/240 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LLIEDD LA + L + V V G+ + + ++ +ILDL L + G E Sbjct: 9 KVLLIEDDDRLAQLVSEYLGNYELTVEVVRRGDTAVAAVREHQPALVILDLMLPHMDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A PV IL+ D+V GL+ GADDY+ KP LVAR RA++RR Sbjct: 69 VCRRIR-AFSRVPVLILTARVDTYDQVAGLEIGADDYVLKPVEPRLLVARARALLRRVVP 127 Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + ++V G+L+++ +TV +G + L E+ ++ +L+ T L+++ Sbjct: 128 ALPAAEPAVPHDDVLVFGELAISPPNRTVTWRGQPVDLKTAEFNLLLILARAAGTVLSRD 187 Query: 173 MFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L L +DG D + +D I +LR++ +A+ + I+T+WGRGY+ +A +E Sbjct: 188 DILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 243 >gi|253701540|ref|YP_003022729.1| transcriptional regulator [Geobacter sp. M21] gi|251776390|gb|ACT18971.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 234 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 115/228 (50%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ LA I L+ E + + + GE+ +E K +FD IILD+ L I GFE Sbjct: 7 QILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVKVEKFDLIILDVMLPGIGGFE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R PV +L+ S+ D++ GL +GADDY+ KPFN +E + R+ ++RRS Sbjct: 67 VCERIRALDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRRSAW 126 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + GD V L + + I LT E +M+ L R+ + + + L Sbjct: 127 YRPEPVEEGYRFGDNEVFLLSYRARTRQGEIDLTDLEVRMLSLFFHREGEAIPRGVILES 186 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ + E + +D FI +LRK + +TV G GY N Sbjct: 187 VWGYSTDAETRTLDNFIVRLRKYFEPEPSRPIFFQTVRGVGYRFSRNP 234 >gi|194364065|ref|YP_002026675.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194346869|gb|ACF49992.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 237 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+D+ + +++ L+++ + V G++G++L + D +ILD+GL D+ G E Sbjct: 14 RVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDMDLVILDIGLPDMEGHE 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120 VL LR PV +L+ + +KVR L +GA+DY++KPF +EL+AR+RA++R RS Sbjct: 74 VLEQLRQWS-QVPVIMLTVRAGETEKVRALDTGANDYVTKPFGTQELMARVRALLRTRSV 132 Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + V G L V+L + V + G + LT KEY ++ LL +T+ L + Sbjct: 133 PSDGTPPVFDDGHLHVDLVRREVALDGEPVALTRKEYALLSLLLRNAGRVVTQPQILQEI 192 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218 + + + + + + KLR KL ++A Y+ T G G Sbjct: 193 WGPTHQHDTHYLRILVGKLRHKLGDSALDSRYLFTEPGVG 232 >gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 233 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +L + L+ E + V GE+ + L + D +ILD L + G EV Sbjct: 5 VLIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLVAEDQPDVVILDWMLPSLSGIEV 64 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR + P+ +L+ D++RGL +GADDY+SKPF+ EL+AR++A++RR++ Sbjct: 65 CRQLRRKPRTRDLPILMLTARGEESDRIRGLNTGADDYMSKPFSMPELLARVKALLRRAQ 124 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+ + D+ ++L A V G IHL E+++++ L ++E LN ++ Sbjct: 125 PTSAKGTLSYSDVVMDLGAHRVTRGGRYIHLGPTEFRLLQFLMQNPGAVFSREELLNAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 E + +DV I +LRK L N + I TV GY L N Sbjct: 185 GPDIYVEPRTVDVHIRRLRKAL-NGEASTDLIRTVRAAGYALDTNP 229 >gi|331268666|ref|YP_004395158.1| two-component response regulator [Clostridium botulinum BKT015925] gi|329125216|gb|AEB75161.1| two-component response regulator [Clostridium botulinum BKT015925] Length = 233 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IEDD +A I L EN++V + G +G++ ++D +ILD+ L ++ GF Sbjct: 4 RVLVIEDDIEIASIIRKHLTRENYDVNWSSTGSEGLKDFNKDKYDLVILDIMLPEMDGFM 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + +R+ + P+ ILS DKV+GL+ GADDYI+KPF+ EL AR+ ++R +G Sbjct: 64 VCKNIRLIS-NVPILILSAKKQELDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKG 122 Query: 122 ---HAQSLIVTG---DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +Q V L + D V V I LT KE+ ++ L++ +N TK+ Sbjct: 123 DNKKSQKQDVWSYKQGLKIIKDEMRVTVNDDEIELTAKEFALLVLMAQNENKVFTKKDLY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + I V I +LR+K+ YI+TVWG GY Sbjct: 183 ENIWHQNNLEGNNTITVHIKELRQKIKEDVKHPQYIQTVWGTGY 226 >gi|326789251|ref|YP_004307072.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326540015|gb|ADZ81874.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 234 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD+ +A + L ++ + V G +G+E K +D +I+D+ L + G+ Sbjct: 4 RLLIVEDDEQIADILREYLMNKGYEVNWASTGNEGLEDFKMKMYDLLIVDIMLPGMDGYS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + +++R P+ I+S + DK++GL+ GADDY++KPF+ E+ ARI +++RR + Sbjct: 64 LCQSIRWVS-DVPILIISARNKELDKIKGLKIGADDYVTKPFSLPEVEARIESLLRRYKR 122 Query: 121 ---GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q I G LS+N + K + ++LT E+ ++ +L+ TK+ Sbjct: 123 MNSSEEQEEIHHYEGGLSINFNRKQAYLNEEELNLTATEWALLTILAKNPQRPFTKKELY 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 H++ D I V I +LR KL + +IET WG GY Sbjct: 183 EHIWHEEDIESSNTITVHIKQLRNKLKEDSKNPKFIETAWGIGY 226 >gi|238026960|ref|YP_002911191.1| osmolarity response regulator [Burkholderia glumae BGR1] gi|237876154|gb|ACR28487.1| Hypothetical protein bglu_1g13360 [Burkholderia glumae BGR1] Length = 244 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 18/212 (8%) Query: 23 ENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 + FNVYV E+ + K + FD ++LDL L G + R LR + TP+ +L+ Sbjct: 32 QGFNVYV---AENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLT 88 Query: 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131 D++ GL+ GADDY+ KPFN ELVARI A++RR + + G+ Sbjct: 89 AKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGE 148 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KI 189 S+NL +T+ G I LT E+ ++++ + L++E + L GR E EV + Sbjct: 149 FSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRS 206 Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +DV I +LRK + G +I+TVWG GYV Sbjct: 207 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238 >gi|171915205|ref|ZP_02930675.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Verrucomicrobium spinosum DSM 4136] Length = 235 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/205 (35%), Positives = 116/205 (56%), Gaps = 1/205 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D+ L + L L+S+ + V+ G G+ F D I+LDLGL D+ G E Sbjct: 11 RALVVDDEVQLRRLLRLALESKGYEVFEAGTGSLGLSEAAFRHPDVILLDLGLPDMDGLE 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR TPV +LS KV L++GADDY++KPF+ EL AR+ AI RR + Sbjct: 71 VLKRLR-EWTETPVLVLSVRDQEAIKVAALENGADDYVTKPFSTAELAARLGAIQRRRKT 129 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + G L ++L A+ V++ G + LT EY +++LL+ +T++ L ++ Sbjct: 130 PEEPSLELGKLFLDLAAREVKLAGAELKLTPIEYNLLKLLARNLGRVITQKQILKDVWGP 189 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAG 206 + + + V++ LRKKL +AAG Sbjct: 190 NATEQAQYLRVYVAHLRKKLGDAAG 214 >gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 226 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ILLIED++ + L + V Y D G DG+ L + IILD+ L + G Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++VLRALR A +PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 60 WQVLRALRTAH-QSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L + G L ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 119 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + E +DV I +LR K+ + K I TV G GY L+ A Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPFENK-LIMTVRGMGYRLQAEA 222 >gi|218896838|ref|YP_002445249.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543555|gb|ACK95949.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 232 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRVR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G ++LT EY ++ L++ KN T E Sbjct: 125 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228 >gi|160898293|ref|YP_001563875.1| osmolarity response regulator [Delftia acidovorans SPH-1] gi|160363877|gb|ABX35490.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 243 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 +IL+++DD + + L E F + + EDG L + D I+LDL + Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEIMI---AEDGKALNRILLRETVDLIVLDLMMPGED 66 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 67 GLSICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 Query: 119 SRGHAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +GD + +L + ++ G + LT E+ M++ L L+ Sbjct: 127 RPPQEAPGAPSGDNEVVSFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLS 186 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L L GR+ EP + +DV + +LRK + A YI+TVWG GYV Sbjct: 187 REK-LALLARGREFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVF 237 >gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2] Length = 227 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+ + + + +L E + V V D G + D ++LDL L + G E Sbjct: 3 RILLVEDEDSFSDPLSYLLGKEGYEVTVADDGLKALAEFDRNGADLVLLDLMLPGVSGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LRV K S P+ +L+ S DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCRELRV-KSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVLRRNVE 121 Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G +S++ G + ++++ V V+G + + KE++++E+L +T+ ++ Sbjct: 122 SEGFDDESVLEAGGVRIDVERHVVSVRGEELSMPLKEFELLEILIRNSGRVMTRGQLIDR 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ + TV G GY Sbjct: 182 IWGEDYVGDTKTLDVHVKRLRAKVEQNPSEPRLLTTVRGLGY 223 >gi|75762247|ref|ZP_00742136.1| Two-component response regulator vanR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490270|gb|EAO53597.1| Two-component response regulator vanR [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 247 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 21 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 80 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 81 CRRVR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G ++LT EY ++ L++ KN T E Sbjct: 140 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEIY 199 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 243 >gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254] gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254] Length = 229 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+ +D+K + + K NF V GE ++ + EFD I+LD+ + GF+ Sbjct: 3 KVLIADDNKQIVSILSEYCKKNNFTVSTVFDGEAALKEIEENEFDIILLDVMMPKKDGFD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R + P+ +++ +K+ GL+ GADDYI KPF+ E++ARI AI+RR Sbjct: 63 VCRQVRTFS-NVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITP 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + +L ++L+ TV++ I LT KE +++ L+ +N T+E L+ + Sbjct: 122 KNDESAKIFIYDNLEIDLNNFTVKINDEIISLTKKEIEILWTLATNQNKVFTRENLLDLI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + +D I +LR KL N K I+T+WG GY Sbjct: 182 WGFDYFGESRTVDTHIKRLRAKLDNYKHDKWNIKTIWGVGY 222 >gi|167766452|ref|ZP_02438505.1| hypothetical protein CLOSS21_00958 [Clostridium sp. SS2/1] gi|167711861|gb|EDS22440.1| hypothetical protein CLOSS21_00958 [Clostridium sp. SS2/1] Length = 245 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 9/222 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59 +IL+++DDK L ++++ N Y T DG+E + D I+LD+ + + G Sbjct: 25 KILVVDDDKEL---VKMLCSYFNMKQYETITATDGMEALNKIKMKPDIILLDINMPRMDG 81 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV R +R +K+ P+ L+ +DK+ GL SG DDYI+KPF+ EL ARI ++R Sbjct: 82 IEVCRLIR-SKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKRE 140 Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H Q ++ ++ K V + GHR+ T EYQ+IE LS+ KE Sbjct: 141 ERHQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFGKERIYAQ 200 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + I + ++RKK+++ + K YIETVWG GY Sbjct: 201 VCGYDAEGDSRTITELVRRIRKKIADYS-EKEYIETVWGIGY 241 >gi|42518843|ref|NP_964773.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|41583129|gb|AAS08739.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] Length = 236 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 19/233 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 ++IL++EDD ++A +++ E ++V D+ +DG+E + ++ +D + LDL L Sbjct: 2 LKILMVEDDNSVAEMMKMFFSKEQWDV---DIAKDGVEAVEMFKANPSSYDIVTLDLNLP 58 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 G EV + +R +S P+ +L+ S D++ GL GAD+Y++KPF+ L+ARI+A+ Sbjct: 59 KKDGMEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKAL 118 Query: 116 VRRSR----GHAQSLI----VTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166 RRS HA + I VT L ++ D + V + LT KE+ ++ ++ + Sbjct: 119 YRRSHLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPK 178 Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ L ++ E + +D I KLR+KL A G ++TVWG GY Sbjct: 179 QVFSRDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGY 229 >gi|89893100|ref|YP_516587.1| hypothetical protein DSY0354 [Desulfitobacterium hafniense Y51] gi|219666356|ref|YP_002456791.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332548|dbj|BAE82143.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536616|gb|ACL18355.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 229 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+I+L++D++++ ++E +++ + D G + +E+ D +ILD+ L + GF Sbjct: 1 MKIMLVDDERSIQKAVEYIVRENGYQFCYVDNGLEALEVFAGEAPDLLILDVMLPGLDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V +R P+ LS I DK G + G DDY+ KPF+ EL RI+A++RR Sbjct: 61 AVCEKIRSFS-DVPIIFLSAKGDIVDKGIGFKMGGDDYLVKPFSSMELDFRIKALLRRPH 119 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ ++ GDL + L+ V G ++ LT KE++++ L+ + T+E Sbjct: 120 RLEDEPNNSDEVLKIGDLELRLNEYEVYSGGEKVELTAKEFEVLAFLAKNRGQVFTREQL 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L+ ++ E + + VFI ++R+K+ YI TVWG GY + Sbjct: 180 LDRIWGLDFEGDTNTVTVFIRRIREKIEADPAKPQYILTVWGVGYKFK 227 >gi|330819658|ref|YP_004348520.1| DNA-binding response regulator [Burkholderia gladioli BSR3] gi|327371653|gb|AEA63008.1| DNA-binding response regulator [Burkholderia gladioli BSR3] Length = 220 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 7/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD + +E L+ E F V +V D G+ + + ++LDLGL G Sbjct: 1 MRVLLVEDDPLIGSGLEEGLRHEGFAVDWVRD-GDAASLALRTTPYGLMLLDLGLPGRDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L +LR + P +++ ++ D++ GL +GADDY+ KPF EEL+ARIRA+ RR Sbjct: 60 LSLLSSLRRRDDALPAIVITARDALSDRIAGLDAGADDYLVKPFALEELLARIRAVNRRH 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G AQ+ + G L ++ V + G + L+ KE+ M+ L + +++E F LY Sbjct: 120 SGRAQTTLSAGALRLDPVRHQVWLGGDEVTLSPKEFVMLHELMVDPGAVISREQFEERLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E + V I LRKKL + A I TV G GY + E A Sbjct: 180 SWGEEIESNAVQVHIHNLRKKLGHVA-----ILTVRGVGYRISEAA 220 >gi|206972806|ref|ZP_03233728.1| regulatory protein VanR [Bacillus cereus AH1134] gi|229193839|ref|ZP_04320763.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876] gi|206731690|gb|EDZ48890.1| regulatory protein VanR [Bacillus cereus AH1134] gi|228589616|gb|EEK47511.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876] Length = 231 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D+ G Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ D I V I LR+K+++ YI+TVWG GY Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGY 227 >gi|190895522|ref|YP_001985814.1| two-component response regulator protein (probably regulates osmosensitive potassium channel) [Rhizobium etli CIAT 652] gi|190699467|gb|ACE93551.1| two-component response regulator protein (probably regulates osmosensitive potassium channel) [Rhizobium etli CIAT 652] Length = 230 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ + + + L ++ + V E + D ++LDLGL D PG Sbjct: 6 VKILVVDDEPPIRKLLRVGLTAQGYEVQEVPNAESARQSVADDMPDLVVLDLGLPDTPGH 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++L+ R +S PV ILS + V+ L+SGADDY++KPF EL ARIR +R Sbjct: 66 DLLQEWRDGGLSMPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRL 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ TG LS++L + V+V G + L+ KEY ++ +L+ LT + L + Sbjct: 126 QQQGEKAIFQTGGLSIDLVKRIVKVDGEELKLSPKEYDILRVLAQHAGKVLTHQFLLKQV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +V+ + V+I ++R+K+ YI T G GY LRE Sbjct: 186 WG--PAADVQYLRVYIRQIRQKIEKIPDQPYYITTETGVGYRLRE 228 >gi|89901505|ref|YP_523976.1| osmolarity response regulator [Rhodoferax ferrireducens T118] gi|89346242|gb|ABD70445.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 243 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+ +DD + + L E F+V + G+ L D I+LDL + G Sbjct: 10 KILICDDDVRIRDLLRRYLTQEGFDVLQAEDGKSLTRLLVREPVDLIVLDLMMPGEDGLS 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPT 129 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S +++ G + +L A+T+ LT E+ M++ L L++E Sbjct: 130 QEAPGSPASDSAVVTFGPFTFDLGARTLRKDDEDQPLTTGEFAMLKALVRHPRQPLSREK 189 Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L L GR+ EP + +DV + +LRK + A YI+TVWG GYV Sbjct: 190 -LAQLARGREFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237 >gi|15893814|ref|NP_347163.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023387|gb|AAK78503.1|AE007567_5 Response regulator (CheY-like and HTH domains) [Clostridium acetobutylicum ATCC 824] gi|325507938|gb|ADZ19574.1| Response regulator (CheY-like and HTH domains) [Clostridium acetobutylicum EA 2018] Length = 228 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 113/220 (51%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I L+EDDKA+A ++ L+L+SE F V D I +FD ++D+ L D GF V Sbjct: 4 IFLVEDDKAIAKNLTLLLRSEGFTVNHASTRSDAIGALDGNKFDLALIDISLPDGNGFTV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ K PV L+ V GL GADDYI+KPF EL+ARIR +R+S Sbjct: 64 CTEIK-EKQDVPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGSS 122 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 S + G L V+ + V+ +G I L+ EY+++ + + +T+ L+ L+D Sbjct: 123 PSSFEICG-LHVDTASGIVKKEGREIFLSALEYRLLLVFINNNKSIITRSRLLDELWDAA 181 Query: 183 DE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + V+I +LR+K+ N I TV G GY L Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPEIILTVRGTGYRL 221 >gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2] gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2] Length = 235 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K +A ++ LK E FNV G++ I++ + D ++LD+ L + G EV Sbjct: 5 ILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIASEIQPDLMLLDIMLPNRDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 CREIR-KKYDFPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRQNIA 123 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G + I G L++ DA V + I LT +E++++ L +T+E L Sbjct: 124 PAEEEGQHSNDIQVGVLTIQPDAYLVLKREETIELTHREFELLHYLGKHIGQVMTREHLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ +V+ +DV + +LR+K+ + +I T G GY LR Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWIVTRRGVGYYLR 230 >gi|284029345|ref|YP_003379276.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808638|gb|ADB30477.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 226 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 7/224 (3%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 ++ED++ L ++ L + V G + +E +D ILD+ L D G ++ R Sbjct: 1 MVEDEEGLVSALRSGLGRAGYAVDTALTGAEAVEKLATTAYDLAILDITLPDTNGLDLCR 60 Query: 65 ALRVAKISTP------VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 A+R +I V +L+ +S+ D+VRGL GADDY++KPF EL+ARIRA++RR Sbjct: 61 AVRRGEIEVASGRELRVLMLTARASLADRVRGLDEGADDYLTKPFALVELLARIRALLRR 120 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + + G+L ++ G + LT KE+ ++ L R ++ E L H+ Sbjct: 121 DVTNGTTQLHVGELVLDSSRHLATRGGRELSLTLKEFGVLRYLMSRPGHVVSAEELLEHV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D +P + + V + LR+KL+ G + +ETV GRGY LR Sbjct: 181 WDENADPFTQSVRVTVGTLRRKLTQ-EGEEPLLETVIGRGYRLR 223 >gi|217978955|ref|YP_002363102.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217504331|gb|ACK51740.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 230 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D+ A+ + L+++ F + + D IILDLGL D PG E+ Sbjct: 8 ILIIDDEPAIRKLLRTGLQTQGFRISDAPSARLARAALAESKPDLIILDLGLPDTPGLEL 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120 LR R ++ PV +LS + V+ L+ GADDY++KPF EL+ARIR +R + Sbjct: 68 LRGWREQRLDVPVVVLSSRTDEAGIVQALELGADDYVTKPFGMNELLARIRVALRHRLQQ 127 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GDL+V+L + V V G + L+ KEY ++ LL LT L ++ Sbjct: 128 QGERPVFEIGDLTVDLVRRIVRVGGREVKLSPKEYDLLRLLVQHAGRVLTHHFMLREIWG 187 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +P+ + V++ +LR+KL YI T G GY L+ Sbjct: 188 DAQDPQY--LRVYVRQLRQKLEQNPEQPKYILTETGVGYRLQ 227 >gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 232 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 130/223 (58%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ +N G + + + K + D I+LDL L + G+E Sbjct: 5 KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R +TP+ +++ DKV GL+ GADDYI+KPF+ E+VAR++A++RR Sbjct: 65 VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124 Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++S I+ G++ V+ + ++ G +I LT KE++++E+L K +T++ L+ Sbjct: 125 TTINIESKSYIL-GNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + +DV I LRKK+ + +IET+ G GY Sbjct: 184 RIWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGY 226 >gi|56962305|ref|YP_174030.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908542|dbj|BAD63069.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 227 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 6/220 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+++A + L++++F V E+ E + D +ILD+ + GF Sbjct: 6 ILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGFAF 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R AK P+ LS S+ DK+RGL G DDYI K + E+VAR++A++RRS + Sbjct: 66 CRRIR-AKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASN 124 Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++++ G L++NL + + V G + LT KEY++++L + + L+ L+ Sbjct: 125 QPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKLW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 DG + + V + +LR+K+ YI VWG GY Sbjct: 185 DGVGDKHT--VRVHLSRLREKIEANPNDPQYIVNVWGIGY 222 >gi|325962246|ref|YP_004240152.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323468333|gb|ADX72018.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 236 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 2/227 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F+V G D + + D +LD+ L D+ GF Sbjct: 9 KLLVVDDEPNIRELLSTSLRFAGFDVVSAANGRDALAAADAHAPDLAVLDVMLPDMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + PV L+ EDKV GL G DDY++KPF+ +E+VARIRA++RR++ Sbjct: 69 VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 128 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++I DL ++ DA V G I L+ E++++ L L N L+K L+H++ Sbjct: 129 LLDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + + I++ +I LR+K+ I+T G GYVLR K Sbjct: 189 EYNFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVLRTAEK 235 >gi|310658178|ref|YP_003935899.1| DNA-binding response regulator in two-component regulatory system with baes [Clostridium sticklandii DSM 519] gi|308824956|emb|CBH20994.1| DNA-binding response regulator in two-component regulatory system with BaeS [Clostridium sticklandii] Length = 227 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 130/232 (56%), Gaps = 19/232 (8%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60 I +++D+K + IE+ LK E +N T DG+ L EF D ++LD+ + + G Sbjct: 4 IFIVDDEKRIRDLIEMYLKKEGYNT-TTFESADGV-LSAIREFMPDLLVLDIMMQGLDGL 61 Query: 61 EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 ++ + +R KIS P+ +S S D++ GL+ GADDY++KPF+ ELV RI+ I++R Sbjct: 62 DLCKEIR--KISEVPIIFVSARSDELDRILGLELGADDYLAKPFSPRELVVRIKTILKRT 119 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S H ++ T DL + + + V+ G I LT KEY+++E L N L++E + Sbjct: 120 TKSSEHNDEILKTKDLEIYVQRRIVKCMGQDIPLTIKEYEVLEFLMKNINLPLSREQIIE 179 Query: 177 HL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + YDG D + +D I +LRKKL A + I+TVWG GY + +N Sbjct: 180 SIWGYDYDGYD----RNVDDTIKRLRKKLKTAK-SRVVIKTVWGYGYRIDDN 226 >gi|229156123|ref|ZP_04284221.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342] gi|228627306|gb|EEK84035.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342] Length = 231 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D+ G Sbjct: 4 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ D I V I LR+K+++ YI+TVWG GY Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGY 227 >gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 232 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G I+LT EY+++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTTEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGY 228 >gi|330898407|gb|EGH29826.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 229 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 116/220 (52%), Gaps = 2/220 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILLIEDD ++ L + V T G DG+ L +D I+ D+ L I G+ Sbjct: 1 MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVQDVMLPGIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ LR A+ PV L+ ++D++RGL+ GADDY+ KPF+ EL+ RIR I+RR Sbjct: 61 QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 DL ++L + V Q I LT KE+ ++ LL R+ L++ + ++D Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 + + ++DV I +LR K+ K I TV G GYV Sbjct: 180 MNFDSDTNVVDVAIKRLRSKVDLPYPVK-LIHTVRGIGYV 218 >gi|331085450|ref|ZP_08334535.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407688|gb|EGG87186.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 233 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD ++ + I LK+ + G+ I Y D ++LDLGL D+ G E+ Sbjct: 6 ILVVEDDTSVRNLITTTLKAHGYRHQTAANGQTAILEASSYNPDIVLLDLGLPDMDGVEI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 +R +R + + P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R RR Sbjct: 66 IRKIR-SWSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQRRLAIM 124 Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +G Q S G L ++ A + G +HLT EY+++ LLS LT Sbjct: 125 QGGTQEEKSTFTNGKLMLDYGAGCAYMDGKELHLTPIEYKLLCLLSKHVGKVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E +V + V++ LRKK+ + YI+T G GY Sbjct: 185 EIWGRSWENDVASLRVYMATLRKKIESEPDMPQYIQTHIGVGY 227 >gi|329296063|ref|ZP_08253399.1| winged helix family two component transcriptional regulator [Plautia stali symbiont] Length = 224 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 2/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+K + + L L+SE + + + G+ + D +ILDLGL D G Sbjct: 4 ILIVEDEKEIRRFVRLALESEGLKIVEAEQLQRGLIEAATRKPDLVILDLGLPDGDGNAF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 +R +R S PV +LS S +DK+ L +GADDY++KPF EL+AR+R +RR R Sbjct: 64 IREVRQWS-SMPVIVLSARSDEQDKIEALDAGADDYLTKPFGIGELLARVRVALRRHQRS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + L+ G++SV+L A+ V G +HLT E++++ LL LT+ LN ++ Sbjct: 123 QPEPLVQFGEVSVDLAARHVLRSGEEVHLTPTEFRLLSLLLNNAGKMLTQRQLLNQVWGP 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++ LR+KL ++ T G GY Sbjct: 183 NAVEHSHYLRIYMGHLRQKLEANPTQPTHLLTETGIGY 220 >gi|329905993|ref|ZP_08274314.1| Two-component system response regulator QseB [Oxalobacteraceae bacterium IMCC9480] gi|327547381|gb|EGF32210.1| Two-component system response regulator QseB [Oxalobacteraceae bacterium IMCC9480] Length = 219 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L + ++ L+ + V + + +++ ++LDLGL G Sbjct: 1 MRLLLVEDDPQLGRATQIGLEQAGYAVDWVQSADSARTAVRLHQYGCLLLDLGLPGEDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR + PV I++ I D++ GL +GADD+I KPF+ +EL ARIRA RR+ Sbjct: 61 SVLRKLRAGGFAQPVLIVTARDQISDRISGLDTGADDFIIKPFDLDELAARIRAASRRAA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I GD+++++ A+ V G + LT KE+ ++ LL L +E LY Sbjct: 121 GRSVDAICHGDIAIDVSARQVRQHGQPVALTAKEFGILLLLVEHAGQVLAREQLEETLYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E E I V I LRKKL GK I TV GY + Sbjct: 181 WGEEIESNAIQVHIHHLRKKL-----GKALIRTVHAVGYTI 216 >gi|319403893|emb|CBI77479.1| two-component response regulator [Bartonella rochalimae ATCC BAA-1498] Length = 228 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ +E + G+ G + +D +++D L G Sbjct: 1 MKILIIEDDRETGRYLEKAFLEAGHTADIAYDGDTGYTFAETVNYDVMVIDRMLPYRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR I TPV ILS + ++D+V GL++G DDY++KPF EL+AR+ + RR Sbjct: 61 SIVTELRAKGIETPVLILSALGQVDDRVTGLRAGGDDYLTKPFAFSELLARVEVLRRRKN 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ A V+ I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGDKNIILQPREFRLLEYLMRYSGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ K++ + TV G GY+L+ K Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDVPLLHTVRGAGYMLKAPEK 226 >gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 231 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 134/226 (59%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ LK E +++ V G + + + + +FD I+LDL L +I G E Sbjct: 5 KVLIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNIIREIKFDLILLDLMLPEIDGLE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R + ++ PV +++ DKV GL+ GADDYI+KPF+ EL+AR++A++RRS Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++I GD+ VN + V + LT KE+++++LL K+ LT+E+ L+ + Sbjct: 125 NFKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKDNILTRELLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + +DV I LRKK+ + YI+T+ G GY N Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230 >gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. NAS-14.1] gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. NAS-14.1] Length = 229 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ A + L+SE F+V + GE+ I L D IILD + + G E Sbjct: 7 QILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIE 66 Query: 62 VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R L+ + + PV +LS S D VRGL++GADDY+ KP++ EL+AR+R +RR Sbjct: 67 VCRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRV 126 Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + ++ D++++ + V + + L EY+++ L R +++ L+H+ Sbjct: 127 RPASSGASLSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHV 186 Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + GRD + + +DV I +LRK L+ + GG + I TV G GY L Sbjct: 187 W-GRDIYVDTRTVDVHIARLRKALT-SHGGDDPIRTVRGAGYAL 228 >gi|115351977|ref|YP_773816.1| osmolarity response regulator [Burkholderia ambifaria AMMD] gi|121601171|ref|YP_993296.1| osmolarity response regulator [Burkholderia mallei SAVP1] gi|124384064|ref|YP_001029261.1| osmolarity response regulator [Burkholderia mallei NCTC 10229] gi|126439716|ref|YP_001059384.1| osmolarity response regulator [Burkholderia pseudomallei 668] gi|126448269|ref|YP_001080804.1| osmolarity response regulator [Burkholderia mallei NCTC 10247] gi|126455359|ref|YP_001066655.1| osmolarity response regulator [Burkholderia pseudomallei 1106a] gi|134276984|ref|ZP_01763699.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305] gi|134295968|ref|YP_001119703.1| osmolarity response regulator [Burkholderia vietnamiensis G4] gi|161524506|ref|YP_001579518.1| osmolarity response regulator [Burkholderia multivorans ATCC 17616] gi|170699751|ref|ZP_02890785.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171320810|ref|ZP_02909815.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172060899|ref|YP_001808551.1| osmolarity response regulator [Burkholderia ambifaria MC40-6] gi|217421794|ref|ZP_03453298.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 576] gi|221209186|ref|ZP_03582178.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD2] gi|221215040|ref|ZP_03588007.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD1] gi|226197493|ref|ZP_03793070.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei Pakistan 9] gi|237812712|ref|YP_002897163.1| osmolarity response regulator [Burkholderia pseudomallei MSHR346] gi|238562218|ref|ZP_00440797.2| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse 4] gi|242317900|ref|ZP_04816916.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 1106b] gi|251766642|ref|ZP_02264532.2| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20] gi|254178039|ref|ZP_04884694.1| DNA-binding response regulator RisA [Burkholderia mallei ATCC 10399] gi|254179405|ref|ZP_04886004.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 1655] gi|254198234|ref|ZP_04904656.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei S13] gi|254206419|ref|ZP_04912771.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU] gi|254252143|ref|ZP_04945461.1| Response regulator [Burkholderia dolosa AUO158] gi|254260987|ref|ZP_04952041.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 1710a] gi|254297288|ref|ZP_04964741.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 406e] gi|254358171|ref|ZP_04974444.1| DNA-binding response regulator OmpR [Burkholderia mallei 2002721280] gi|115281965|gb|ABI87482.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] gi|121229981|gb|ABM52499.1| DNA-binding response regulator RisA [Burkholderia mallei SAVP1] gi|124292084|gb|ABN01353.1| DNA-binding response regulator RisA [Burkholderia mallei NCTC 10229] gi|124894752|gb|EAY68632.1| Response regulator [Burkholderia dolosa AUO158] gi|126219209|gb|ABN82715.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 668] gi|126229001|gb|ABN92541.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 1106a] gi|126241139|gb|ABO04232.1| DNA-binding response regulator RisA [Burkholderia mallei NCTC 10247] gi|134139125|gb|ABO54868.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] gi|134250634|gb|EBA50713.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305] gi|147753862|gb|EDK60927.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU] gi|148027298|gb|EDK85319.1| DNA-binding response regulator OmpR [Burkholderia mallei 2002721280] gi|157807187|gb|EDO84357.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 406e] gi|160341935|gb|ABX15021.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|160699078|gb|EDP89048.1| DNA-binding response regulator RisA [Burkholderia mallei ATCC 10399] gi|169654975|gb|EDS87668.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei S13] gi|170135342|gb|EDT03636.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171093932|gb|EDT39048.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171993416|gb|ACB64335.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] gi|184209945|gb|EDU06988.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 1655] gi|217395536|gb|EEC35554.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 576] gi|221164976|gb|EED97455.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD1] gi|221170924|gb|EEE03379.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD2] gi|225930872|gb|EEH26882.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei Pakistan 9] gi|237506008|gb|ACQ98326.1| osmolarity response regulator [Burkholderia pseudomallei MSHR346] gi|238523088|gb|EEP86529.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse 4] gi|242141139|gb|EES27541.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 1106b] gi|243065036|gb|EES47222.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20] gi|254219676|gb|EET09060.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 1710a] Length = 244 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 18/212 (8%) Query: 23 ENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 + FNVYV E+ + K + FD ++LDL L G + R LR + TP+ +L+ Sbjct: 32 QGFNVYV---AENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLT 88 Query: 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131 D++ GL+ GADDY+ KPFN ELVARI A++RR + + G+ Sbjct: 89 AKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGE 148 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KI 189 S+NL +T+ G I LT E+ ++++ + L++E + L GR E EV + Sbjct: 149 FSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRS 206 Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +DV I +LRK + G +I+TVWG GYV Sbjct: 207 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238 >gi|317125788|ref|YP_004099900.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589876|gb|ADU49173.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 226 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG- 59 MRIL++EDD LA + L + V G +E + +D ++LDL L I G Sbjct: 1 MRILVVEDDARLADVVRRALGEAGYAADVAHDGPAALEAFEVETYDLVVLDLMLPGIAGG 60 Query: 60 -FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV R +R P+ +L+ + S+ KV GL +GADDY+ KPF+ EL+AR+RA++RR Sbjct: 61 GMEVCRVMRRHSSDVPILMLTALDSLRRKVEGLDAGADDYLVKPFHLSELLARVRALMRR 120 Query: 119 S-RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + R A L G L ++ +T G I LT KEY ++E L ++ ++H Sbjct: 121 APRADAPVLEAAGVL-LDPATRTAHRAGRSIPLTAKEYAVLEYLMRNAGHVVSSSQLIDH 179 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + ++ +I LR KL+ G IET G GY++ Sbjct: 180 AWDTNYQGVSNVVQTYIRYLRVKLAE-PGLPEVIETRRGYGYLI 222 >gi|306833226|ref|ZP_07466355.1| response regulator [Streptococcus bovis ATCC 700338] gi|304424593|gb|EFM27730.1| response regulator [Streptococcus bovis ATCC 700338] Length = 233 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ ++ + + LK+ + G+ I + D ++LDLGL D+ G EV Sbjct: 6 VLLVEDNSSVRNLMTTTLKAHGYRYLTAPNGDAAILEASSHNPDIVLLDLGLPDMDGVEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AIV 116 ++ +R + S P+ ++S S DK+ L +GADDY++KPF+ EEL+AR+R ++ Sbjct: 66 IKKIR-SWSSMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQRRLTMM 124 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +R S+ + G+L ++ A + +HLT EY+++ LLS LT Sbjct: 125 QRFSPTEASVFINGELRIDYAAGCAYINSEELHLTPIEYKLLCLLSKNTGKVLTHTYITQ 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + ++ + VF+ LRKK+ YI+T G GY Sbjct: 185 NIWGSNWDNDIASLRVFMATLRKKIEKEPNSPQYIQTHIGVGY 227 >gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916] Length = 280 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + V + GE +E+ D ++LD+ L + GF V Sbjct: 37 ILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSESPDLVVLDVMLPKMDGFAV 96 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI +I+RR RG Sbjct: 97 CRRLR-AESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRVGRG 155 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A Q ++ GDL V+ + + V RI LT E+ ++ELL + + Sbjct: 156 SATAEPREIPVGQGVLRVGDLVVDTNRRQVTRGTDRISLTYTEFSLLELLFREPGRVVPR 215 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 216 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 265 >gi|47567077|ref|ZP_00237794.1| two-component response regulator vanRB [Bacillus cereus G9241] gi|47556395|gb|EAL14729.1| two-component response regulator vanRB [Bacillus cereus G9241] Length = 221 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 9/221 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + I L ++NF V V G +GI L + +D ++LD+ L DI G+ Sbjct: 3 HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R + P+ +L+G+ + E +++G + G DDYI+KPF+ + R+ A++RR Sbjct: 63 ICKIMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A +++ +L +N A V G++I LT KE+++I L + L++ LN + Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIHTLLQNRGKVLSRSDLLNKI 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +V++ID I LRKKL G YI+TV G GY Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKL-----GIPYIKTVKGIGY 217 >gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 231 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+K +A ++ L+ + V G++GIE K D I+LD+ + DI G+E Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEMP-DLIVLDIMMPDIDGYE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R +R I P+ LS S D+++G G DDY+ KPF+ +EL+ARI A +RR + Sbjct: 62 VCRKIRDTVIC-PIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++L+ +++++L ++ V V+G+ I LT KE+ ++ELLSL +KE Sbjct: 121 AILLNEEKKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + + I +R K+ YI+TVWG GY Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIGGFDPDTEYIKTVWGIGY 225 >gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 224 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E K+ E D +ILD+ L D G Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--KWNEGPDVLILDVMLPDTDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 120 KKTEAAVSHEVIEAGEIVICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1] gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1] gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 235 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 10/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + V+V GE+ ++ D I+LDL L + G E Sbjct: 3 KILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VARQVR-KNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGA 121 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + S I GDL ++ +A V +G I LT +E++++ L+ +T+E Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR N ++E Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYLR-NPENE 235 >gi|262201296|ref|YP_003272504.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084643|gb|ACY20611.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 223 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M L+++DD +A ++ L S+ + V V G DG+ D I+LD+ L G+ Sbjct: 1 MHALVVDDDPGVAETVRRALVSDGWAVTVAHDGVDGLWKATEGSHDVIVLDIMLPGHNGY 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR I TPV +L+ D+ L +GADDY+ KPF+ L A +RA++RR Sbjct: 61 VVVRELRARGIWTPVVMLTAKDGEYDQAEALDAGADDYLVKPFSVVVLKAHLRALLRRGV 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +V GDL V+ TV I LT +E+ ++E L +T ++K + ++D Sbjct: 121 RERPARLVAGDLVVDPAEHTVTRGQTPITLTPREFAVLEYLIRNADTVVSKCEIVRSVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++V++ LRK++ + GK IETV G GY LR Sbjct: 181 ENFDGDANIVEVYVGYLRKRI-DTPFGKRSIETVRGAGYRLR 221 >gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 232 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 130/223 (58%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ +N G + + + K + D I+LDL L + G+E Sbjct: 5 KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R +TP+ +++ DKV GL+ GADDYI+KPF+ E+VAR++A++RR Sbjct: 65 VCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124 Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++S I+ G++ V+ + ++ G +I LT KE++++E+L K +T++ L+ Sbjct: 125 TTINIESKSYIL-GNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + +DV I LRKK+ + +IET+ G GY Sbjct: 184 RIWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGY 226 >gi|15890951|ref|NP_356623.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15159265|gb|AAK89408.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 217 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MR+LL+EDD L ++ + + V + LG D + + I+LD+ L D G Sbjct: 1 MRVLLVEDDYVLGEALRDHVAAAGHAVDWFKTLG-DAMAATLTMGYGLILLDMRLPDGEG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +L++LR +TPV IL+ + D++ GL +GADDY+ KPF+ EL AR+ A+ RR Sbjct: 60 ITLLQSLRKRDDATPVIILTAHDQVSDRIAGLNAGADDYVVKPFDLNELSARMLAVSRRY 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + +I + +N A+ + V G L+ +E+ ++E L ++K + LY Sbjct: 120 EGRSAPVIRLPGIEINQVARNITVDGTAQTLSAREWAVLEKLVEHPGAVVSKAQLHDTLY 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E E ++V+I +LRKK+ G + +ETV G GY ++ Sbjct: 180 EFGAEIESNTVEVYISRLRKKI-----GHDRVETVRGVGYTIK 217 >gi|256395907|ref|YP_003117471.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362133|gb|ACU75630.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 230 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 119/225 (52%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ + ++ + LKS ++V G D + DA++LDLGL D+ G E Sbjct: 3 RILVVDDEPQILRALRINLKSRTYDVETVANGVDALASAARRLPDAVLLDLGLPDMDGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V+ LR + P+ +LSG + ++K+ L +GADD+++KPF EEL+AR+RA++RR + Sbjct: 63 VILGLR-GWTTVPIVVLSGRTDPQEKIHALDAGADDFVTKPFAMEELLARLRAVIRRHQQ 121 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G S + G ++L A +V G + LT E+ ++E+L ++ Sbjct: 122 ANAGATGAETSSVRLGSCDIDLVAHSVARGGDPVRLTRTEWALLEVLLRHPGQLVSTSRL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ E + + +LR+KL + ++ T +G GY Sbjct: 182 LADVWGNSHTGEAGYLRFHMARLRRKLEDDPQNPRHLMTEYGTGY 226 >gi|167969026|ref|ZP_02551303.1| putative two component DNA binding Transcriptional regulatory protein tcrA [Mycobacterium tuberculosis H37Ra] gi|215444716|ref|ZP_03431468.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis T85] Length = 195 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 66/182 (36%), Positives = 101/182 (55%), Gaps = 1/182 (0%) Query: 44 EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103 ++DA++LD+ L I GFEV LR ++ TPV +L+ ++ D++ GL GADDY++KPF Sbjct: 8 DYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPF 67 Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 N +EL AR+RA+ RR + GDL ++ V I L+ KE+ ++E L Sbjct: 68 NLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIR 127 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 R T+ L +D E I+DV+I LR K+ G + +ET+ G GY LR+ Sbjct: 128 RPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTS-LETIRGAGYRLRK 186 Query: 224 NA 225 + Sbjct: 187 DG 188 >gi|32267196|ref|NP_861228.1| hypothetical protein HH1697 [Helicobacter hepaticus ATCC 51449] gi|32263249|gb|AAP78294.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 226 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IEDD L +I ML ++ + + +DG +D ++ D L+D G Sbjct: 1 MRILVIEDDPTLCKNIAEMLNERSYQTDIAENLKDGEYFISIRNYDLVLADWDLSDGCGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ ++ TPV I+S +S E+++R + GADD++SKPF+ E L+ RI+A R R Sbjct: 61 DIIAQVKEKSPRTPVIIISAQTSAENEIRAFKEGADDFVSKPFSLEVLLIRIQA---RLR 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S+I DL +N D + + +G I + GK ++++ L+ ++ ++KE L+ ++ Sbjct: 118 FWGSSVIEIEDLVINPDEEKITYRGQEIEVKGKPFEVLTHLARHRDQIVSKEQLLDAIW- 176 Query: 181 GRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +EPE+ +I+V I ++R+K+ IETV RGY Sbjct: 177 --EEPELVTPNVIEVAINQIRQKMDKPL-NIGTIETVRRRGY 215 >gi|32491287|ref|NP_871541.1| DNA-binding transcriptional regulator CpxR [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166494|dbj|BAC24684.1| cpxR [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 231 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 9/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60 ++LL++DDK L ++ +L+ E F + V GE L K + D ++LD+ + G Sbjct: 3 KLLLVDDDKELISLLKELLEKEGFEIQVAYNGEQA--LSKLNDTIDLLLLDIIMPKKNGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + L+ +R K P+ +L+ S DK+ GL+ GADDYISKPFNK ELVARI+AI+RRS Sbjct: 61 DTLKEIRKNKQHLPIIMLTARGSELDKIIGLELGADDYISKPFNKRELVARIKAILRRSY 120 Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q S I L++N + ++LTG E+ ++ LL+ +++E Sbjct: 121 LFNQKILDNKSTIFVDLLNINPGRQEAYFNNIYLNLTGTEFSLLFLLAKNLGNVVSREYL 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + P + ID+ I LRKKL + + + +T+ G+GY++ Sbjct: 181 SKEILGKKLNPFDRAIDMHISNLRKKLPSRKDSRPWFKTLRGKGYLM 227 >gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262] gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria monocytogenes HPB2262] gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL J2-064] gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL J1-208] gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262] gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria monocytogenes HPB2262] gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816] gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220] gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes str. Scott A] Length = 237 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 128/232 (55%), Gaps = 15/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ +EL + + D I+LD+ L G E Sbjct: 5 KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR--- 120 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 H+Q S + G L ++ DA +G I LT +E++++ L+ +T Sbjct: 121 HSQVSSNAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMT 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 181 REHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLR 232 >gi|330817288|ref|YP_004360993.1| hypothetical protein bgla_1g24100 [Burkholderia gladioli BSR3] gi|327369681|gb|AEA61037.1| hypothetical protein bgla_1g24100 [Burkholderia gladioli BSR3] Length = 244 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 18/212 (8%) Query: 23 ENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 + FNVYV E+ + K + FD ++LDL L G + R LR + TP+ +L+ Sbjct: 32 QGFNVYV---AENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLT 88 Query: 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131 D++ GL+ GADDY+ KPFN ELVARI A++RR + + G+ Sbjct: 89 AKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGE 148 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KI 189 S+NL +T+ G I LT E+ ++++ + L++E + L GR E EV + Sbjct: 149 FSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRS 206 Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +DV I +LRK + G +I+TVWG GYV Sbjct: 207 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238 >gi|326802533|ref|YP_004320352.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326553297|gb|ADZ81682.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 236 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 120/236 (50%), Gaps = 21/236 (8%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED++ L +I+L L+ E + V G+ ++ K F+ IILD+ + +I GF+ Sbjct: 6 RILLVEDEEHLLEAIKLNLELEGYKVTTATDGKKALKKFKEERFNLIILDVMIPEIDGFQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V +R+ P+ L+ ++ ED++ GL+ GADDY+ KPFN EEL+ R+ +VRR Sbjct: 66 VAETIRLENTEVPIMFLTAKNTSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRRG-- 123 Query: 122 HAQSLIVTGD-----LSVNLDAKTVEVQGHRIH--------LTGKEYQMIELLSLRKNTT 168 + GD S + KT+ +H LT KE +++LL R+N Sbjct: 124 ------MKGDDLKELNSYQIGDKTIYFNSFELHHADGTITALTKKETMLLKLLIERRNEA 177 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++E L +++ P + ID FI RK Y ++ G GY +N Sbjct: 178 VSREQILETVWNYDVYPSTRTIDNFILTFRKYFEPDQKNPIYFHSIRGVGYKFTDN 233 >gi|300714679|ref|YP_003739482.1| two-component response regulator [Erwinia billingiae Eb661] gi|299060515|emb|CAX57622.1| Two-component response regulator [Erwinia billingiae Eb661] Length = 232 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E F+V V GE + L D ++LD+ + G + Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFDVLVAGDGEQALTLID-NTIDLLLLDVMMPKKNGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q + L +N + + LTG E+ ++ LL+ +++E Sbjct: 121 SEQQQQHDNSSPTLEVDHLRLNPGRQEASFDSLTLDLTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL + G + +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 >gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 226 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+ED+++LA + +L+ E F+V + G + D ++LDL L + G +V Sbjct: 4 ILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119 + LR S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR + Sbjct: 64 CKRLRAVS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGET 122 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ +G + ++++ TV V G I + KE+ ++E L LT+ ++ ++ Sbjct: 123 IEESDEILGSGRIHMDVERHTVTVDGEEISMPLKEFDLLEYLMRNSGRVLTRGQLIDRVW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + K +DV I +LR K+ ++ TV G GY Sbjct: 183 GADYVGDTKTLDVHIKRLRSKIEPEPSAPCHVITVRGLGY 222 >gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51] gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 237 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 2/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +++L++ED+ ++ I L L+ + V + GED + L + D ++LDL L I G Sbjct: 6 VKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGL 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + IL+ DK+ GL+ GADDY+ KPFN EL+ARI+A++RR Sbjct: 66 EVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRD 125 Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ G L ++ A + + LT EY ++++ L +E LN + Sbjct: 126 RYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGI 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV I +LR+K+ + YI+T+WG GY Sbjct: 186 WGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGY 226 >gi|309782919|ref|ZP_07677639.1| DNA-binding response regulator TctD [Ralstonia sp. 5_7_47FAA] gi|308918343|gb|EFP64020.1| DNA-binding response regulator TctD [Ralstonia sp. 5_7_47FAA] Length = 233 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL+ED++ LA + L F V + DG+ F EFDA++LDL L Sbjct: 1 MRILLVEDEEELAAWLARALAQSGF---VIERAADGVIAEAFLGSGEFDAVVLDLRLPRK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VL +R TPV IL+ +++++VRGL +GADD+++KPF EL AR+ A++R Sbjct: 58 DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG A + G L + K + G + LT +E+ + L + ++K + Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLSGEPLALTPREHAALSALLHKTGQPISKVHLFDK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + ++V + +LRKKL AG I TV G GY+L Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGTGVQIVTVRGLGYLL 218 >gi|227513040|ref|ZP_03943089.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227083797|gb|EEI19109.1| response regulator [Lactobacillus buchneri ATCC 11577] Length = 245 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 25/239 (10%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-----EFDAIILDLGLT 55 M++L+IED+K+++ + + + E ++V DGIE + +D I LDL L Sbjct: 1 MKLLMIEDNKSVSEMMSMFFQKEGWDV---SFAYDGIEAVDMFNEDPESWDMITLDLNLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 G EV + +R S P+ +L+ S D+V G + GADDY++KPF+ LVARI+A+ Sbjct: 58 KKDGMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKAL 117 Query: 116 VRRSRGHAQ--------------SLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIEL 160 RR+ AQ I T +N + + + G I LT KE++++ Sbjct: 118 QRRAHTEAQVEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNA 177 Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ + ++E L ++ + + +D I KLR+K+ G I+TVWG GY Sbjct: 178 LAQKPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERV--GPQVIQTVWGVGY 234 >gi|324997181|ref|ZP_08118293.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Pseudonocardia sp. P1] Length = 225 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 11/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ ED+ +A ++ L + F V V G + FD ++LD+GL + GF+ Sbjct: 4 RILVAEDEPRIASFLKKGLVAAGFGVTVVADGTGVHDHALTGGFDLMVLDIGLPGMDGFD 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VLR LR A + PV IL+ S+ D V GL GADDY++KPF EEL+AR++ + R+R Sbjct: 64 VLRRLRAAGSAIPVIILTARDSVHDTVAGLTGGADDYMAKPFQFEELLARVQLRLERAR- 122 Query: 122 HAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A V + LD +T V + GH + L+ +E+ + E L+++ L ++ Sbjct: 123 PAPDPEVLAHRGLELDPRTRLVTLHGHAVELSAREFALAETFLRHPGQVLSRDQLLRLVW 182 Query: 180 DGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++DV++ LR+KL G ++I TV G GY L Sbjct: 183 GSEYSAAATSSNVVDVYVRYLRRKL-----GPDWIATVRGAGYRL 222 >gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4] gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4] Length = 231 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ + + I + L + +N+ G++ ++ K + F IILD+ + ++ G+E Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V +R ++ P+ +L+ + DKV+GL GADDY++KPF EEL+AR+ A++RR+ Sbjct: 64 VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + +L +++D V VQ + +HLT KE+++++LL L ++ L + Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + + +D I +R KL IETVWG GY L+E Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKE 228 >gi|229164006|ref|ZP_04291943.1| Two-component response regulator vanRB [Bacillus cereus R309803] gi|228619389|gb|EEK76278.1| Two-component response regulator vanRB [Bacillus cereus R309803] Length = 216 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 121/218 (55%), Gaps = 9/218 (4%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +IED+ + I L ++NF V V G +GI L + +D ++LD+ L DI G+ + + Sbjct: 1 MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---RG 121 +R + P+ +L+G+ + E +++G + G DDYI+KPF+ + R+ A++RR+ Sbjct: 61 IMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 +++ +L +N A V G++I LT KE+++I L + L++ LN ++ Sbjct: 120 ETATILHFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +V++ID I LRKKL G YI+TV G GY Sbjct: 180 EHYGDVRVIDTHIKNLRKKL-----GIPYIKTVKGIGY 212 >gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM 15053] gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM 15053] Length = 226 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 128/223 (57%), Gaps = 10/223 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 ++IL+++D+ + + L E + V G + +E+ FYE +ILD+ + + Sbjct: 4 VKILVVDDESRMRKLVRDFLGREGYTVLEAGDGMEAMEI--FYEDKEIALVILDVMMPKM 61 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++V R +R + TPV +L+ S D+++G + G D+YISKPF+ + LVAR+ AI+R Sbjct: 62 DGWQVCREIRQSS-QTPVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILR 120 Query: 118 RSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RS A+ +I G + +N A V+ +G +I L+ KE++++ + L++E LN Sbjct: 121 RSHVLGAEEIIDAGGIQINKAAHEVKAEGKQIDLSYKEFELLVYFVENEGIALSREKILN 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++++ + + ID + KLR KL + NYI+T+WG GY Sbjct: 181 NVWNYDYFGDARTIDTHVKKLRNKLGDKG---NYIKTIWGMGY 220 >gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 232 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 130/223 (58%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ +N G + + + K + D I+LDL L + G+E Sbjct: 5 KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R +TP+ +++ DKV GL+ GADDYI+KPF+ E+VAR++A++RR Sbjct: 65 VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124 Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++S I+ G++ V+ + ++ G +I LT KE++++E+L K +T++ L+ Sbjct: 125 TTINIESKSYIL-GNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + +DV I LRKK+ + +IET+ G GY Sbjct: 184 RIWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGY 226 >gi|78066718|ref|YP_369487.1| osmolarity response regulator [Burkholderia sp. 383] gi|107028883|ref|YP_625978.1| osmolarity response regulator [Burkholderia cenocepacia AU 1054] gi|116689959|ref|YP_835582.1| osmolarity response regulator [Burkholderia cenocepacia HI2424] gi|170733298|ref|YP_001765245.1| osmolarity response regulator [Burkholderia cenocepacia MC0-3] gi|254247957|ref|ZP_04941278.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|77967463|gb|ABB08843.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] gi|105898047|gb|ABF81005.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116648048|gb|ABK08689.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|124872733|gb|EAY64449.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|169816540|gb|ACA91123.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] gi|325523540|gb|EGD01847.1| osmolarity response regulator [Burkholderia sp. TJI49] Length = 244 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 18/212 (8%) Query: 23 ENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 + FNVYV E+ + K + FD ++LDL L G + R LR + TP+ +L+ Sbjct: 32 QGFNVYV---AENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLT 88 Query: 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131 D++ GL+ GADDY+ KPFN ELVARI A++RR + + G+ Sbjct: 89 AKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGE 148 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KI 189 S+NL +T+ G I LT E+ ++++ + L++E + L GR E EV + Sbjct: 149 FSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRS 206 Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +DV I +LRK + G +I+TVWG GYV Sbjct: 207 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238 >gi|329577270|gb|EGG58733.1| response regulator receiver domain protein [Enterococcus faecalis TX1467] Length = 229 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+ +DDK + + + + +E + V G++ + +L + D +ILD+ + + G Sbjct: 1 MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ LR + P+ +L+ ++ DK++GL +GADDY+++PFN E++AR+++I+RRS Sbjct: 61 MEVVKELR-KESQIPIIMLTAKTTDMDKIKGLVAGADDYVTEPFNPLEVMARVKSILRRS 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G L +N D+ V+ ++G I LT E+ ++ LL+ N + + Sbjct: 120 QMQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A GG+ I+TVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGY 224 >gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 232 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 130/225 (57%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++DD + + L L E + V + GE+G+E + D ++LD+ + + G E Sbjct: 5 KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKFNQLKPDMVLLDVMMPRMDGLE 64 Query: 62 VLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 V R R+ K+ +TPV +L+ DKV GL+ GADDY+ KPF+ +E+VARI+A++RR Sbjct: 65 VCR--RIRKLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCT 122 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ +I +L +++++ + V+G + KE +++ L+ N T++ Sbjct: 123 VTTSQTESSEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L+ ++ + + IDV + +LR+KL+ A+ K ++TVWG GY Sbjct: 183 LDEVWGFEYYGDSRTIDVHVKRLREKLAGAS-DKWELKTVWGVGY 226 >gi|307727553|ref|YP_003910766.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307588078|gb|ADN61475.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 231 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+ED+ L+ S+ L S V GE + + ++ +ILD+GL + G Sbjct: 9 MRVLLVEDNPILSRSLTDALTSAKLTVDCMHDGESADHVLRTQDYALVILDIGLPKLDGL 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + + PV +L+ S+E++VRGL GADDY++KPF EL AR RA++RR Sbjct: 69 EVLRRLRARRNAVPVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGH 128 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G L + ++ + G + LT +E ++E+L LR + KE ++ Sbjct: 129 GQEATRAQCGTLVYDSVDRSFTLDGEPLALTPRERSVLEVLILRNGRAINKETLSEKIFG 188 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I++++ +LRKKL ++ G I T+ G GY+L Sbjct: 189 LDESVNADAIEIYVHRLRKKLERSSVG---IVTLRGLGYLL 226 >gi|317130982|ref|YP_004097264.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315475930|gb|ADU32533.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 235 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 128/233 (54%), Gaps = 7/233 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A ++ L+ + + V G + IE+ +E D I+LD+ L G E Sbjct: 5 KILVVDDEQPIADILKFGLEKDGYEVICAYDGNEAIEMTNKHEPDLILLDIMLPYQDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ ELVAR++A +RR++ Sbjct: 65 VCREVR-KKFDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQK 123 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + I G L + DA V +G I LT +E++++ L+ +T+E L Sbjct: 124 SKEPDTEKKNIQIGALLIQPDAYLVSKRGEPIELTHREFELVYYLAKHIGQVMTREHLLQ 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 ++ +V+ +DV + +LR+K+ + +I T G GY LR NA E Sbjct: 184 AVWGYDYFGDVRTVDVTVRRLREKVEDDPSNPTWIITRRGVGYYLR-NADQEN 235 >gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26] gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26] Length = 242 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ EL+AR++A +RR Sbjct: 76 CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238 >gi|121611277|ref|YP_999084.1| osmolarity response regulator [Verminephrobacter eiseniae EF01-2] gi|121555917|gb|ABM60066.1| two component transcriptional regulator, winged helix family [Verminephrobacter eiseniae EF01-2] Length = 243 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 ++L+++DD + + L E F+V EDG L + D I+LDL + Sbjct: 10 KVLVVDDDARIRDLLHRYLTQEGFDVMA---AEDGKALNRLLLRETVDIIVLDLMMPGED 66 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 67 GLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 Query: 119 SRGHAQSLIVTGDLSV--------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +GD V +L + ++ G + LT E+ M++ L L+ Sbjct: 127 RPAQEAPGAPSGDNEVVTFGPFVFDLGTRALQRNGEELVLTTGEFAMLKALVRHPRQPLS 186 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L L GR+ EP + +DV + +LRK + A YI+TVWG GYV Sbjct: 187 REK-LALLARGREFEPFDRSLDVQVSRLRKMVEADAAAPRYIQTVWGVGYVF 237 >gi|33594059|ref|NP_881703.1| putative two-component system response regulator [Bordetella pertussis Tohama I] gi|33564133|emb|CAE43405.1| putative two-component system response regulator [Bordetella pertussis Tohama I] gi|332383476|gb|AEE68323.1| putative two-component system response regulator [Bordetella pertussis CS] Length = 236 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+L++EDD +A ++ L+ F G + L + FDA++LD+GL + G Sbjct: 10 FRVLIVEDDLTIAANLYDYLQVRGFVPDAAYDGRSALALLDEHPFDAMVLDVGLPGMDGH 69 Query: 61 EVLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL ALRV + + PV +L+ ++DK+ G GADDY++KPF E+ AR+ A+++RS Sbjct: 70 AVLHALRVERRAALPVLMLTARDGLDDKLAGFAHGADDYLTKPFALAEVEARLLALIQRS 129 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 RG SL G L + + V V G +HLT K ++E+L +++E N L Sbjct: 130 RGAVVDSLRSFGPLQFDSATREVAVHGKPVHLTRKCGMIVEVLLRDPGRVVSREQLENAL 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G D P + + LR+ L++A G + IETV G G+ L Sbjct: 190 W-GDDPPSSDALRSQVHLLRRALADA--GFDGIETVHGTGWRL 229 >gi|27378242|ref|NP_769771.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27351389|dbj|BAC48396.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 247 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 131/230 (56%), Gaps = 8/230 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57 MR+L+IEDD+ S + ++K+ ++ D GE+G+ + + ++D +++D L Sbjct: 22 MRLLIIEDDR---ESADYLVKAFREVGHIADHAPDGEEGLAMAENGDYDVLVVDRMLPKR 78 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++ ALR + PV ILS + ++D+++GL++G DDY+ KP++ EL+AR+ + R Sbjct: 79 DGLSLIGALRDKGNTAPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSR 138 Query: 118 RSRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R G A+ +L GDL ++ + V + L +E++++E L +T+ M L Sbjct: 139 RRGGPAEDTLYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLE 198 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++D +P+ +IDV I +LR K+ + + T+ G GY++R+ + Sbjct: 199 NVWDYHFDPQTNVIDVHISRLRSKIDKGF-ERPLLHTIRGAGYMIRDGIR 247 >gi|323487591|ref|ZP_08092881.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] gi|291547394|emb|CBL20502.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] gi|323399090|gb|EGA91498.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] Length = 231 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D++ +A +E+ LK+EN+ VY D + + + D ILD+ L D+ GF Sbjct: 4 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ DK+ GL GADDY++KPF E+VAR++A +RR + Sbjct: 64 LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 122 Query: 122 HAQSLI---VTGDLSVN---LDAKTVE--VQGHRIHLTGKEYQMIE-LLSLRKNTTLTKE 172 ++ +I + +LS N L+ +T E + G + LT E+ ++ LLS N +E Sbjct: 123 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +F D I V I LR+KL++ + YI+T+WG GY Sbjct: 183 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGY 229 >gi|210608616|ref|ZP_03287933.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787] gi|210152971|gb|EEA83977.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787] Length = 232 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 9/227 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D++A+A +E+ LKSEN+NV G+D ++ + + D ILD+ L DI GF Sbjct: 3 INILVVDDEEAIADLVEVYLKSENYNVLKCYNGKDALKCVEKEDIDLAILDVMLPDIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R PV +L+ DK+ GL GADDYI+KPF ELVAR++A +RR Sbjct: 63 DICQKIR-ENHHFPVIMLTARDENIDKITGLTIGADDYITKPFQMLELVARVKAQLRRVT 121 Query: 121 GHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + Q ++I+ G L V+ + + + LT E+ ++ +L + + E Sbjct: 122 KYNQQDVKMNENVIIIGGLVVDKENHECTINDEPLSLTPTEFSILWVLCKNRGKVVDSEK 181 Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + I V I LR K++++A YI+TVWG GY Sbjct: 182 LFEEVWGEKYFVNSTNTIMVHIRHLRDKMNDSAENPKYIKTVWGVGY 228 >gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 237 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 132/234 (56%), Gaps = 17/234 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDIPG 59 IL+++D+ ++ + L + VY DG+E L FY+ D IILD+ + + G Sbjct: 8 ILVVDDEASIRRVLSTRLSKIGYQVYT---AADGVEALDVFYDQRPDLIILDVMMPKLDG 64 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + V +A+R A P+ +L+ +S + D++ GL+ GADDY+ KPF+ +EL +R+R+I+RR Sbjct: 65 YGVCQAVRKAS-RVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRRM 123 Query: 120 RG------HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 H QS +I G ++V+ + + V RI LT E+ ++ELL+ +++ Sbjct: 124 ETTKPLPFHHQSNGVIRFGSITVDTNKRQVFKGRSRISLTHMEFSVLELLATHPGEPISR 183 Query: 172 EMFLNHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 FL+ ++ E V +++D+ I LR+KL +++G I TV G GY L+ Sbjct: 184 SEFLHKVWGYSHEANVDTQVVDIHISHLRRKLGDSSGNPKLIHTVHGVGYTLKP 237 >gi|53719705|ref|YP_108691.1| osmolarity response regulator [Burkholderia pseudomallei K96243] gi|53723644|ref|YP_103129.1| osmolarity response regulator [Burkholderia mallei ATCC 23344] gi|76812107|ref|YP_333899.1| osmolarity response regulator [Burkholderia pseudomallei 1710b] gi|83719808|ref|YP_442618.1| osmolarity response regulator [Burkholderia thailandensis E264] gi|167563113|ref|ZP_02356029.1| osmolarity response regulator [Burkholderia oklahomensis EO147] gi|167570297|ref|ZP_02363171.1| osmolarity response regulator [Burkholderia oklahomensis C6786] gi|167581552|ref|ZP_02374426.1| osmolarity response regulator [Burkholderia thailandensis TXDOH] gi|167586924|ref|ZP_02379312.1| osmolarity response regulator [Burkholderia ubonensis Bu] gi|167619667|ref|ZP_02388298.1| osmolarity response regulator [Burkholderia thailandensis Bt4] gi|167720066|ref|ZP_02403302.1| osmolarity response regulator [Burkholderia pseudomallei DM98] gi|167739078|ref|ZP_02411852.1| osmolarity response regulator [Burkholderia pseudomallei 14] gi|167816290|ref|ZP_02447970.1| osmolarity response regulator [Burkholderia pseudomallei 91] gi|167824672|ref|ZP_02456143.1| osmolarity response regulator [Burkholderia pseudomallei 9] gi|167836959|ref|ZP_02463842.1| osmolarity response regulator [Burkholderia thailandensis MSMB43] gi|167846202|ref|ZP_02471710.1| osmolarity response regulator [Burkholderia pseudomallei B7210] gi|167894783|ref|ZP_02482185.1| osmolarity response regulator [Burkholderia pseudomallei 7894] gi|167903182|ref|ZP_02490387.1| osmolarity response regulator [Burkholderia pseudomallei NCTC 13177] gi|167911414|ref|ZP_02498505.1| osmolarity response regulator [Burkholderia pseudomallei 112] gi|167919428|ref|ZP_02506519.1| osmolarity response regulator [Burkholderia pseudomallei BCC215] gi|189350738|ref|YP_001946366.1| osmolarity response regulator [Burkholderia multivorans ATCC 17616] gi|206560374|ref|YP_002231138.1| osmolarity response regulator [Burkholderia cenocepacia J2315] gi|221198232|ref|ZP_03571278.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD2M] gi|254189208|ref|ZP_04895719.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei Pasteur 52237] gi|254200083|ref|ZP_04906449.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH] gi|257138831|ref|ZP_05587093.1| osmolarity response regulator [Burkholderia thailandensis E264] gi|52210119|emb|CAH36097.1| oxidative stress related two component system, transcriptional regulator [Burkholderia pseudomallei K96243] gi|52427067|gb|AAU47660.1| DNA-binding response regulator RisA [Burkholderia mallei ATCC 23344] gi|76581560|gb|ABA51035.1| RisA protein [Burkholderia pseudomallei 1710b] gi|83653633|gb|ABC37696.1| DNA-binding response regulator RisA [Burkholderia thailandensis E264] gi|147749679|gb|EDK56753.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH] gi|157936887|gb|EDO92557.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei Pasteur 52237] gi|189334760|dbj|BAG43830.1| two-component system osmolarityresponse regulator [Burkholderia multivorans ATCC 17616] gi|198036415|emb|CAR52311.1| oxidative stress related two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|221182164|gb|EEE14565.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD2M] Length = 241 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 18/212 (8%) Query: 23 ENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 + FNVYV E+ + K + FD ++LDL L G + R LR + TP+ +L+ Sbjct: 29 QGFNVYV---AENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLT 85 Query: 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131 D++ GL+ GADDY+ KPFN ELVARI A++RR + + G+ Sbjct: 86 AKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGE 145 Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KI 189 S+NL +T+ G I LT E+ ++++ + L++E + L GR E EV + Sbjct: 146 FSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRS 203 Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +DV I +LRK + G +I+TVWG GYV Sbjct: 204 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 235 >gi|312796438|ref|YP_004029360.1| transcriptional regulatory protein ompR [Burkholderia rhizoxinica HKI 454] gi|312168213|emb|CBW75216.1| Transcriptional regulatory protein ompR [Burkholderia rhizoxinica HKI 454] Length = 241 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 12/209 (5%) Query: 23 ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 + FNVYV + +L FD ++LDL L G + R LR + TP+ +L+ Sbjct: 29 QGFNVYVAENAPSMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAKG 88 Query: 83 SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLSV 134 D++ GL+ GADDY+ KPFN ELVARI A++RR + + G+ ++ Sbjct: 89 EDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPSELPGAPSETAEVFEFGEFAL 148 Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KIIDV 192 NL +T+ G I LT E+ ++++ + + L++E + L GR E EV + +DV Sbjct: 149 NLATRTLTKNGQEIPLTTGEFSVLKVFARQPRQPLSREKLM-ELARGR-EYEVFDRSLDV 206 Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVL 221 I +LRK + G +I+TVWG GYV Sbjct: 207 QISRLRKLIEPDPGSPRFIQTVWGLGYVF 235 >gi|296159399|ref|ZP_06842224.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295890383|gb|EFG70176.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 227 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 12/230 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL++ED+ + L F V +V D G G ++D IILD+ L G Sbjct: 1 MRILIVEDEIKTGTYLRKGLTEAGFTVDWVAD-GVTGQHRALTEDYDLIILDVMLPGQDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + VL+ LR ST V +L+ ++DKVRGL+ G DDY+ KPF+ EL+AR+R+I+RR Sbjct: 60 WTVLKNLRRTH-STSVLLLTARDEVDDKVRGLEMGGDDYLGKPFDFAELLARVRSILRRG 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + + + +L ++L + QG I LT KE+ ++ LL R+ L + + ++ Sbjct: 119 QPRDAASLQVSNLVLDLTRRKATRQGDTILLTAKEFALLWLLMRRQGEILPRSTIASQVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENA 225 D + + ++D I +LR K+ + NY I TV G GYVL E Sbjct: 179 DMNFDSDTNVVDAAIRRLRAKVDD-----NYEPRLIHTVRGMGYVLEERG 223 >gi|56552060|ref|YP_162899.1| two component transcriptional regulator PhoB [Zymomonas mobilis subsp. mobilis ZM4] gi|4768853|gb|AAD29647.1|AF124757_7 phosphate regulatory protein PhoB [Zymomonas mobilis subsp. mobilis ZM4] gi|56543634|gb|AAV89788.1| two component transcriptional regulator PhoB, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] Length = 231 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+LL+EDD ALA ++ +NF V T G++ + L + D ++LD + G Sbjct: 4 LRLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGI 63 Query: 61 EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 EV R LR + P+ +L+ +D++RGL++GADDY++KPF+ ELVAR+ A++RR Sbjct: 64 EVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123 Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R ++ + D+ ++L + V+ G + + E++++ L ++E L++ Sbjct: 124 IRPALSKEQLNYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDY 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + E++ +DV I +LRK L N G + I TV GY L Sbjct: 184 IWGQDSDIELRTVDVHIRRLRKAL-NRDGLPDLIRTVRSAGYAL 226 >gi|239834066|ref|ZP_04682394.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239822129|gb|EEQ93698.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ A+ + + L +E + V G E + D ++LDLGL D G Sbjct: 6 LKILVVDDEPAIRKLLRVGLTTEGYTVVEAADGSQADERIAMDKPDIVVLDLGLPDTDGH 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119 +L+ R IS P+ ILS + VR L+ GADDYI KPF +EL AR+R +R R Sbjct: 66 TLLQRWRENGISLPILILSSRTDEAGIVRALEEGADDYIPKPFGMKELAARLRVALRHRL 125 Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + Q L G L+V+L + V++ G I L+ KEY ++ LL LT L+ + Sbjct: 126 QQQGQKPLFQCGGLTVDLVRRIVKLNGEEIKLSPKEYDILSLLVQHAGKVLTHHFILSQV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +V+ + +++ +LR+K+ + +YI T G GY LRE Sbjct: 186 WG--PAADVQYLRIYVRQLRQKIEKSPDQPHYILTETGVGYRLRE 228 >gi|325277133|ref|ZP_08142779.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097710|gb|EGB95910.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 225 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+ ED+ ++ L FNV G D ++ +D +ILD+ + + G+ Sbjct: 1 MKLLVAEDEPKTGAYLQQGLSEAGFNVDRVMTGTDALQHALSESYDLLILDVMMPGLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR +R A PV L+ +ED+V+GL+ GADDY+ KPF EL+AR+R ++RR Sbjct: 61 EVLRMVRAAGKDVPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGN 120 Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G Q+ + DL V+L + G RI LT KE+ ++ELL R+ L K + + ++ Sbjct: 121 GSPTQTTMKIADLEVDLMKRRAIRGGKRIDLTAKEFSLLELLLRRRGEVLPKSLIASQVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +I+V + +LR K+ + K I T G GY++ Sbjct: 181 DMNFDSDTNVIEVAVRRLRAKIDDDFDLK-LIHTARGMGYMM 221 >gi|241664447|ref|YP_002982807.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12D] gi|240866474|gb|ACS64135.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 233 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL+ED++ LA + L F V + DG+ F EFDA++LDL L Sbjct: 1 MRILLVEDEEELAAWLARALAQSGF---VIERAADGVIAEAFLGSGEFDAVVLDLRLPRK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VL +R TPV IL+ +++++VRGL +GADD+++KPF EL AR+ A++R Sbjct: 58 DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG A + G L + K + G + LT +E+ + L + ++K + Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLSGEPLALTPREHAALSALLHKTGQPISKVHLFDK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + ++V + +LRKKL AG I TV G GY+L Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGTGVQIVTVRGLGYLL 218 >gi|6117972|gb|AAF03932.1|AF139908_2 LisR [Listeria monocytogenes] Length = 226 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 130/225 (57%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+K LA IEL L+ EN+ V + G G+EL E+DAI+LDL L + G E Sbjct: 3 RILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNGVE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K TP+ +++ + +GADDYI KPF EEL+AR+R+++RR Sbjct: 63 VCRRVRQVK-QTPIIMITARDLLSIVYPDWITGADDYIVKPFAIEELLARLRSLLRRVEN 121 Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 QS T +L V + + V+ I LT +EY+++ L N LT+E+ LN Sbjct: 122 AEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLLNK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E E ++DV++ LR K+ + ++YI+TV G GYV+R Sbjct: 182 VWGYETEVETNVVDVYVRYLRNKIDH-PDEESYIQTVRGTGYVMR 225 >gi|327402108|ref|YP_004342946.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327317616|gb|AEA42108.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 229 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD L+ +I L EN V G ++ K FD +ILD+ L G+++ Sbjct: 4 ILLVEDDAILSRNISDALLEENMQVEFAYDGNIAEKMLKKTNFDCVILDVNLPGKNGYKI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R TPV +L+ +EDK++G GADDY++KPF EL+ RI+++++RS Sbjct: 64 CKNFRSYNTQTPVIMLTAFDELEDKIQGYDCGADDYLTKPFYMRELLLRIQSLLKRSENL 123 Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + +L+V D+ +N +K V QG + LT +E+Q++ L K ++K+ + Sbjct: 124 GKNEFENNLLVADDIVINNASKKVTRQGKEVQLTPREFQILLKLVECKGELVSKQDLVKE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + I+V+I LR KL + GK I+T G GY Sbjct: 184 IWGNIVDANTNTIEVYINFLRGKL-DKPFGKQSIKTKIGYGY 224 >gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101] Length = 254 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 125/233 (53%), Gaps = 12/233 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+ +D+ + +E L + V G + +EL + E D ++LD+ + ++ GF Sbjct: 9 LKILIADDEANIRRILETRLAMQGHQVAAAQDGTEALELFRSVEPDVVVLDVMMPELDGF 68 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL +R A+ PV +L+ + + D++ GL+ GADDY+ KPF+ +EL ARI+ ++RR+ Sbjct: 69 AVLERIR-AQSEVPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRRAS 127 Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + ++I GDLSV+ + + G RI LTG E+ ++ELL R + + Sbjct: 128 QGQGGSSVGSASSNVIAVGDLSVDFNRRQAFRCGERIRLTGMEFHLLELLISRNGEPINR 187 Query: 172 EMFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ + E + +++DV I +LR KL I T G GY+ + Sbjct: 188 LDMLEAVWGYKPERASDSRVVDVHISRLRGKLEPDPLNPELILTARGMGYMFQ 240 >gi|269140696|ref|YP_003297397.1| two-component response regulator [Edwardsiella tarda EIB202] gi|267986357|gb|ACY86186.1| two-component response regulator [Edwardsiella tarda EIB202] gi|304560480|gb|ADM43144.1| Two-component response regulator [Edwardsiella tarda FL6-60] Length = 242 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L E + V G+ G+ L + +DA+ILDL L + G + Sbjct: 10 RILVVEDDTLIAELLTLHLCDEGYQVTHAADGDRGMALVEQGGWDALILDLMLPGVDGLD 69 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R TP+ I S SS +V GL+ GADDY++KPF+ ELVAR++A+ RR Sbjct: 70 ICRRVRAMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQEA 129 Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++L++ G L+++ A+ V V I LT +E+ ++ + ++ L Sbjct: 130 MGRNLMLEGGRLSYGPLTIDPMARVVWVGERPIELTPREFDLLYFFARHPGQVFSRLQLL 189 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + + ++ I +LR K+ I TVWG GY Sbjct: 190 DKVWGYQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGY 233 >gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Pediococcus acidilactici 7_4] gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Pediococcus acidilactici 7_4] Length = 234 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL+++D+ A+ + LK N+ V D G D ++ + D +I+DL L + G Sbjct: 3 MTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLDGV 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 E + +R P+ +L+ SS DK+ GL+ GADDY++KPF+ +EL++RI+AI+RR+ Sbjct: 63 EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L VTG ++++ TV+ + LT E+++++ L N L+++ Sbjct: 123 RVVDLKKIVPELPVTG-VTIDFKRLTVQKNEQPVALTPNEFRLLKFLFQNSNQVLSRDQI 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ + +I+D+ I LR KL + I+T+ G GY Sbjct: 182 LEQVWGYEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGY 226 >gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes] Length = 237 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ +EL + + D I+LD+ L G E Sbjct: 5 KILVLDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + S G L ++ DA +G I LT +E++++ L+ +T+E Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLR 232 >gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] Length = 232 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +D+ +A IE+ L+ E ++V GE+ + + + D ++LD+ + + G+ Sbjct: 4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKMDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R AK P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 64 EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +S + G ++++ + +TV V G +I LT KE+ ++ LL+ E Sbjct: 123 TLNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 H++ + V I LRKKL I+TVWG GY Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|187930279|ref|YP_001900766.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|187727169|gb|ACD28334.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 233 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL+ED++ LA + L F V + DG+ F EFDA++LDL L Sbjct: 1 MRILLVEDEEELAAWLARALAQSGF---VIERAADGVIAEAFLGSGEFDAVVLDLRLPRK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GF VL +R TPV IL+ +++++VRGL +GADD+++KPF EL AR+ A++R Sbjct: 58 DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG A + G L + K + G + LT +E+ + L + ++K + Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLSGEPLSLTPREHAALSALLHKTGQPISKVHLFDK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + ++V + +LRKKL AG I TV G GY+L Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGTGVQIVTVRGLGYLL 218 >gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + +E + D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWN-EQPDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R + PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR + Sbjct: 60 ELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 L I G+L + + + V G I LT +E+ + +L ++ L Sbjct: 120 KKEVPLNHEVIGAGNLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL A+G YI+T++G GY L Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLG-ASG--EYIKTIYGVGYKL 221 >gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)] Length = 248 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 129/234 (55%), Gaps = 9/234 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V G +L + F ++LDL L G Sbjct: 15 RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDGIS 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 + + LR P+ +L+ S D++ GL++GADDY+ KPFN +EL+ARI+A++RR SR Sbjct: 75 ICKRLREDNSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHSR 134 Query: 121 ----GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +Q + V G +++L +T++ G+ + LT E+ +++ L LT++ Sbjct: 135 ELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 194 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 +N L GR+ + + IDV + +LR+ + + YI+TVWG GYV + +D Sbjct: 195 MN-LARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDEED 247 >gi|319938367|ref|ZP_08012762.1| winged helix family Two component transcriptional regulator [Coprobacillus sp. 29_1] gi|319806455|gb|EFW03119.1| winged helix family Two component transcriptional regulator [Coprobacillus sp. 29_1] Length = 221 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD + + I+ L+ ++N + G + L +D I+LDL L I G E Sbjct: 5 RILIVEDDSEINNMIKEFLEGYDYNCHQAFSGSECKLLTHMESYDLILLDLMLPGISGEE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ L AK S V +LS S IE KV L+ GA+DYI KPF+ EL+ARI+ +R+ Sbjct: 65 LIQEL--AKTS-KVIVLSAKSGIESKVNLLELGANDYICKPFDIHELLARIKVQLRQYEP 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + LI D +++LD T+ G I LT E+++IEL TKE ++++ Sbjct: 122 KQRQLIYK-DWTIDLDLMTLNAAGQSIDLTSLEFKIIELFMRYPQKVFTKENIYEYVWED 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 K I V I +R KL + G +YI+TVWG G+ L Sbjct: 181 DYVVGDKTIHVHISNIRTKL-KSTGTDHYIQTVWGMGFKL 219 >gi|293609501|ref|ZP_06691803.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827953|gb|EFF86316.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 223 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 60 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ LR +KI PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR Sbjct: 61 SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL +++ V G+ I L+ E+ ++ L L K +T+ + ++ Sbjct: 119 QYLQENELSISDLKMDVVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + IDV + +LR K+ K I T+ G GY Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEGYELK-LIHTIRGLGY 217 >gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048] gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048] Length = 266 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 14/229 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57 +RIL+ +DDK + ++ L+ E +Y+ D +G E LC F + ++ +ILDL + + Sbjct: 33 IRILIADDDKEIRDLLKRYLERE---LYMVDTAINGEEALCLFNKNNYNLVILDLMMPKV 89 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EV R LR + P+ +L+ DK+ GL GADDYI+KPF+ E+VAR++A++R Sbjct: 90 DGIEVCRKLR-DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMR 148 Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 R + ++ + L+++ TV G I+LTGKE ++++ + T Sbjct: 149 RFLVLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFT 208 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 K +++D + + V I KLRKK+ + +I+TVWG GY Sbjct: 209 KTQLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGY 257 >gi|206974997|ref|ZP_03235912.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959391|ref|YP_002337939.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095531|ref|YP_002529591.1| response regulator [Bacillus cereus Q1] gi|206747016|gb|EDZ58408.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065539|gb|ACJ79789.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239589|gb|ACM12299.1| response regulator [Bacillus cereus Q1] Length = 232 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ EL+AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G I+LT EY ++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228 >gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202] gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202] gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL103PA1] Length = 226 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+IED+++ + ML+ E F V G DG+E+ D ++LDL + +PG E Sbjct: 3 RVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSRNGADIVLLDLMMPGLPGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + + + +++ S DKV GL+ GADDY++KPF+ ELVARIRA+ RR Sbjct: 63 VCRQLR-QRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGSP 121 Query: 122 HAQ-SLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + S V + V +D + V V+G + L KE+ ++E+L +T+ ++ + Sbjct: 122 EVEVSPDVLEESGVRMDVERHEVSVEGTVVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + K +DV I +LR K+ + I TV G GY Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEDDPSRPVRITTVRGLGY 222 >gi|17545269|ref|NP_518671.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17427560|emb|CAD14078.1| probable response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 232 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL+ EDD LA + L+ + V G +D +ILD+GL + Sbjct: 1 MRILIAEDDATLADGLTRSLRQAGYAVDRAADGAAADAALSAQTAQTYDLLILDVGLPRL 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL+ LR PV IL+ S++++V+GL GADDY++KPF EL AR+RA+VR Sbjct: 61 SGLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +L+ G L+ + + ++ + L+ +E ++E+L R ++KE ++H Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIRDQMVDLSARELGLLEILLSRAGRLVSKEQLVDH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L +E I+V++ +LRKK+ I TV G GY L Sbjct: 181 LCGWGEEVSNNAIEVYVHRLRKKIEVDG---IRIATVRGLGYCL 221 >gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 229 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 121/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F + + G + + + D ++LDL L + G E+ Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEASIVNDGSEAVSTFERVNPDIVLLDLMLPGVSGTEI 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 + +R AK + PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR Sbjct: 64 CKTIR-AKSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGVV 122 Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 A ++ G + +++ TV V G + L KE+ ++E L LT+ ++ Sbjct: 123 ADDEDAAIGVVEVGPVRMDVQRHTVTVAGTEVTLPLKEFDLLEYLLRNSGRVLTRSQLID 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + K +DV + +LR K+ ++ TV G GY Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRSKVEPDPSQPRHLITVRGLGY 225 >gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB [Sphingobium japonicum UT26S] gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB [Sphingobium japonicum UT26S] Length = 233 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD ALA + K E+F V T GE+ + L + D ++LD + + G E Sbjct: 5 RMLLVEDDAALAELLIWHFKREDFEVVHTVDGEEALLLAQENMPDIVLLDWMVESLSGIE 64 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR + P+ +L+ ED+VRGL++GADDY++KPF+ ELVAR+ A++RR Sbjct: 65 VCRRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124 Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A + D+ ++ V G I L E+++++ ++E L+ + Sbjct: 125 RPALAGETLTFADVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E++ +DV I +LRK ++ ++ I TV GY L Sbjct: 185 WGQDSDIELRTVDVHIRRLRKAINADGRHRDIIRTVRSAGYAL 227 >gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 231 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 133/226 (58%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ LK E ++ V G + +++ + +FD I+LDL L +I G E Sbjct: 5 KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGLE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R + ++ PV +++ DKV GL+ GADDYI+KPF+ EL+AR++A++RRS Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++I GD+ VN + V + LT KE+++++LL K LT+E+ L+ + Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + +DV I LRKK+ + YI+T+ G GY N Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230 >gi|221067477|ref|ZP_03543582.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|264678108|ref|YP_003278015.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299533688|ref|ZP_07047062.1| osmolarity response regulator [Comamonas testosteroni S44] gi|220712500|gb|EED67868.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|262208621|gb|ACY32719.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298718410|gb|EFI59393.1| osmolarity response regulator [Comamonas testosteroni S44] Length = 243 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 +IL+++DD + + L E F + + EDG L + D I+LDL + Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEIMI---AEDGKALNRILLRETVDLIVLDLMMPGED 66 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 67 GLSICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 Query: 119 SRGHAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +GD + +L + ++ G + LT E+ M++ L L+ Sbjct: 127 RPPQEAPGAPSGDNEVVTFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLS 186 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L L GR+ EP + +DV + +LRK + A YI+TVWG GYV Sbjct: 187 REK-LALLARGREFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVF 237 >gi|119715795|ref|YP_922760.1| response regulator receiver [Nocardioides sp. JS614] gi|119536456|gb|ABL81073.1| response regulator receiver [Nocardioides sp. JS614] Length = 228 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 2/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59 MRIL+ EDD LA +E L + V V G + L FD +LD L + G Sbjct: 1 MRILVAEDDVRLAGLLEESLAEAGWQVEVVHNGRVAYDRLLSDTSFDVALLDWMLPGMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR ++ P+ +L+ + D++ GL +GADDY+ KPF+ +EL+AR+RA+ RR Sbjct: 61 VTVARRLRGLGLALPILMLTARGDVRDRIDGLDAGADDYLPKPFDLDELLARLRALYRRG 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + GDL V+ A+ V G I L+ +E+ ++ LL+ +T+ L+ ++ Sbjct: 121 GLGGEAPVQIGDLVVDPGARRVSRGGVEIILSTREFDILYLLASHAGQVVTRLTILDEVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DG + +IDV + +R K+ G + I T+ G GY L Sbjct: 181 DGETDLRSNVIDVHLAAIRGKIDKPF-GTDTITTLRGVGYRL 221 >gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 234 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 129/229 (56%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ L E ++V V G + ++L + E D ++LD L ++ G E Sbjct: 3 KILVVDDEKPISDIIKFNLTKEGYDVAVAMDGREALDLFESEEPDLVLLDQMLPEVEGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VLR +R K TPV +++ S DKV GL+ GADDY++KPF+ EL+ARI+A +RR Sbjct: 63 VLRQIR-TKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQSP 121 Query: 120 -RGHAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 G + + +GD L+++ DA V G I LT +E++++ LS +T++ Sbjct: 122 VSGQSGQVDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLSKHIGQVMTRDD 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + ++R+K+ + T G GY L+ Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYLK 230 >gi|229182111|ref|ZP_04309403.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W] gi|228601362|gb|EEK58891.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W] Length = 281 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L++ED++ +A +EL LK+EN+ V+ ++ +E D ILD+ L D+ G Sbjct: 54 KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLT 113 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + + +R K + P+ +L+ + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 114 ICQKIR-DKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 172 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +++IV L +N+ + + LT E+ ++ +L K ++ E Sbjct: 173 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 232 Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ D I V I LR+K+++ YI+TVWG GY Sbjct: 233 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGY 277 >gi|167461939|ref|ZP_02327028.1| hypothetical protein Plarl_05185 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 205 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/203 (34%), Positives = 116/203 (57%), Gaps = 8/203 (3%) Query: 33 GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92 G G+EL ++D I+LD+ L ++ G EVLR LR + PV +L+ ++ D+V GL Sbjct: 6 GRTGLELALQEKWDLILLDIMLPELSGLEVLRRLRQNNPTVPVILLTARDAVPDRVSGLD 65 Query: 93 SGADDYISKPFNKEELVARIRAIVR----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRI 148 GA+DY++KPF EEL+ARIR ++R +++ + + DL +NL ++ V G + Sbjct: 66 QGANDYVTKPFAIEELLARIRNLLRITEQQNQPENEQTLHVDDLDMNLKSREVRRNGQWV 125 Query: 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGK 208 LT KE+ +++ L K T+E ++ ++ + I+DV+I LR+K+ GK Sbjct: 126 ELTPKEFDLLQYLMEHKGEVRTREDIISDVWGYDFVGDTNIVDVYIRYLRQKIEKGFKGK 185 Query: 209 NYIETVWGRGYVLRENAKDETCE 231 I T+ G GY+L+ + E CE Sbjct: 186 -LIHTIRGIGYLLKGS---EDCE 204 >gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus porcinus str. Jelinkova 176] gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus porcinus str. Jelinkova 176] Length = 236 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 10/233 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++D++ + ++ L E + + + G ++L + +D I+LD+ L + G E Sbjct: 4 QVLLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHYDFILLDIMLPQLDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + +R I TP+ ++S S DKV L+ GADDY++KPF+ ELVAR++AI+RR Sbjct: 64 VCKRIRAKGIQTPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELVARLKAILRRTDK 123 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 S A+ +L + + + ++LT KE++++ L N TLT+ Sbjct: 124 EDNRQDNSERFAEETWTFDNLVIYPERHEIYKDKILLNLTPKEFELLLYLVKHANMTLTR 183 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E L ++ E +++DV I KLR K+ + +I+T+ G GY +E Sbjct: 184 ERLLERIWGYDFGQETRLVDVHIGKLRDKIEDDPKNPKFIKTIRGYGYKFKEK 236 >gi|300863556|ref|ZP_07108502.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300338423|emb|CBN53644.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 232 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 13/231 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55 MR+LL+ED+ L +I+ L E Y+ D ++G E ++ E + I D L Sbjct: 1 MRVLLVEDEPDLGKAIKRTLNQEK---YIVDWAQNGNEAWEYLESQWTQYTLAIFDWLLP 57 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 + G E+ + LR PV +L+ +EDKV GL +GADDY+ KPF EL+AR+RA+ Sbjct: 58 GLSGLELCQRLRAKNNHLPVLMLTARDRMEDKVAGLDAGADDYLVKPFGMAELLARLRAL 117 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTV---EVQGHR--IHLTGKEYQMIELLSLRKNTTLT 170 RRS + +L+++ +TV ++G + I LT KE+Q++E L N +T Sbjct: 118 QRRSPQLQPEQLTVVNLTLDYGTRTVYHFNLKGEKQIISLTNKEFQLLEYLMRHPNQIVT 177 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + N +++ + ++ + LR+KL + N I TV G GY L Sbjct: 178 SDRIRNQIWEADADAFSNVVAAQMRLLRRKLESVGCAANLIGTVHGVGYRL 228 >gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 239 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 126/230 (54%), Gaps = 15/230 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ +L + LK F+V G+ +++ + D ++LD+ L + G + Sbjct: 3 KVLVVDDEPSLQTLLTYNLKKSGFDVVSAVDGKQALDIIHEQKIDIVLLDIMLPEESGVD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R LR K P+ +L+ + DKV GL+ GADDY++KPF+ E++AR+ A++RR Sbjct: 63 VTRELRAEKNQIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVLRRFSQ 122 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 S H+QS G L+++ D V+ G + LT KEY+++ ++ R+ L+ Sbjct: 123 KTQTEKEQSVKHSQSY---GRLTIDFDKMVVQFDGEIVKLTPKEYELLAYMAEREGRVLS 179 Query: 171 KEMFLNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +E L+ ++ P+ +++D+ + LR K+ Y++TV G GY Sbjct: 180 RETILDGVWGYEFSGPDTRMVDMHLSHLRDKIELDPKHPVYLKTVRGFGY 229 >gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L] gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L] Length = 232 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G I+LT EY+++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVILYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228 >gi|312879868|ref|ZP_07739668.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] gi|310783159|gb|EFQ23557.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] Length = 226 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 115/201 (57%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L+IED+ L ++ + ++ V GE G+ + EFD I+LD+ L + GF Sbjct: 1 MKLLVIEDNHDLVQVLQEGFEEHDYAVEAAYEGETGLNRARSGEFDCIVLDVMLPGMDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ R TPV +L+ +++D+V GL GADDY+ KPF+ +EL+AR+ A++RR Sbjct: 61 ELIDRFREEGHDTPVIMLTAKDAVDDRVEGLNRGADDYLIKPFDFKELLARVNALIRRHS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + L+ G L+++ A+ V ++ L +E+ ++ELL +N T++ ++H++ Sbjct: 121 EQRRPLLKCGPLTLDPVARECCVGETKVPLRRREFDILELLMRYENQVFTRDKIISHVWQ 180 Query: 181 GRDEPEVKIIDVFICKLRKKL 201 + ++DV + LR KL Sbjct: 181 KEYDGTSNVVDVHVKYLRDKL 201 >gi|299534866|ref|ZP_07048195.1| response regulator [Lysinibacillus fusiformis ZC1] gi|298729711|gb|EFI70257.1| response regulator [Lysinibacillus fusiformis ZC1] Length = 221 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ EDD L +I +++ E V D G+ +E F +D +ILD + ++ G Sbjct: 1 MKILIAEDDNRLRKNIVHIIQKEFHQVDAVDNGQHALEYILFQTYDLVILDWMMPELSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V + R + IL+ D + GL +GADDY+ KPF EEL+ARIRAI+RR Sbjct: 61 DVCKEARRNGYEGGILILTAKDDSNDIILGLDAGADDYVVKPFKMEELLARIRAILRRKN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +I DL + LD++T+ I LT E+ ++E L + K LT+E ++ Sbjct: 121 KSIHQIIQIDDLKLYLDSRTLYKDNQEILLTKNEFLLLEYLFINKGIVLTREQIYTQVWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E +D + +RKK+ + K+ IE + G GY +R Sbjct: 181 FDHEMTNNNLDALVKLVRKKI-DYNRSKSIIENIRGIGYRVR 221 >gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] Length = 227 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 4/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E + V G + + + D ++LD+ L + GF+ Sbjct: 4 RILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVMLPGMDGFD 63 Query: 62 VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119 V RA+R ++S P+ +L+ S D V GL++GADDY+ KPF +ELVAR+RA +R R Sbjct: 64 VCRAIR--RVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRE 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A + DLS+++ V+ +G I LT E+ ++ L+ ++E L ++ Sbjct: 122 DSQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R + ++++V + +LR K+ + TV G GY Sbjct: 182 GYRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGY 221 >gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] Length = 230 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 8/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DD + I L ++ E F V G +E+ + + +ILD+ L G++ Sbjct: 8 KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 67 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R KIS PV +LS DKV GL+ GADDY+ KPF +ELVAR++A++RR Sbjct: 68 VCREIR--KISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYE 125 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + IV +L +N T++V G + KE +++ L+ N T+E + + Sbjct: 126 HKDSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 + + + +DV I +LR+KL + G+N+ ++TVWG GY Sbjct: 186 WGYDFYGDSRTVDVHIKRLREKLDSE--GQNWQLKTVWGVGY 225 >gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84] gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84] Length = 234 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 10/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ I+ + E + V G + +E+ + D +ILDL L ++ G E Sbjct: 3 KILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V R +R + P+ +LS S DKV GL+ GADDY++KPF+ EL AR++A++RRS Sbjct: 63 VARTIRKTS-NVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121 Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 +V GDL + DA + G + LT +E++++ L+ +T+E Sbjct: 122 PETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 L ++ +V+ +DV I +LR+K+ + YI T G GY ++ N Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233 >gi|154503687|ref|ZP_02040747.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149] gi|153795787|gb|EDN78207.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149] Length = 311 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 10/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +D+K + + L+L E + V + G++ + L E D +LD+ + ++ GF Sbjct: 87 ILIADDEKEIRDILRLLLTGEGYAVCTAENGKEALVLAS-AEVDLYLLDVNMPELSGFMA 145 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 +R + + P+ L+ S DKV G +GADDYI KPF+ EL+ R++AI+RRS RG Sbjct: 146 GSEIR-KQFNAPIIFLTAYSGESDKVMGFSAGADDYIVKPFSNMELLMRVKAILRRSARG 204 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A +S I GDL ++L+ ++V QG I LT E++++ELL K + E Sbjct: 205 TAPAQEEKKSHIPFGDLILDLECQSVLRQGEVIVLTYTEFKILELLVTHKKKIYSLENIY 264 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ D I V I +RKKL + + YI+T WGRGY Sbjct: 265 QSIWE-EDAVGDSAIMVHIKNIRKKLEDDSRNPRYIKTAWGRGY 307 >gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814] gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814] Length = 240 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 11/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + +SI +LK E + G + +++ + D I+LD+ + + G Sbjct: 5 KILVVDDNKEIVYSISELLKYEGYETLKAYDGMEALDIMERENVDLILLDVMMPRLNGLS 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L LR K PV ILS + DKV GL GADDYI KP+N EL+AR++A +RR R Sbjct: 65 ALMKLR-EKSRIPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRRYRA 123 Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 + IV G L ++ + + V+G +HLT EY+++ELL E Sbjct: 124 WSGGETEKKKDPDQIVNGGLVLDKKQRVIFVEGEEVHLTATEYKILELLMAHPGQVFPAE 183 Query: 173 MFLNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 +++ + V+ + V I +R+K+ A Y++ VWG GY + + K Sbjct: 184 QIYENVWQETADYTVENTVMVHIRHIREKVEIDAKKPRYVKVVWGIGYKMEKYGK 238 >gi|116493100|ref|YP_804835.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103250|gb|ABJ68393.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 240 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 130/241 (53%), Gaps = 15/241 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58 MRIL+IED+K+++ + + K E +NV G IE K ++D ++LDL L Sbjct: 1 MRILMIEDNKSVSDMMGMFFKKERWNVTFVYDGLKAIETFKTDPEQWDIVLLDLNLPGKD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G EV LR S P+ +L+ S D+V GL+ GAD+YI+KPF+ L+ARI+A+ RR Sbjct: 61 GMEVAAELRRTSQSIPLIMLTARDSESDQVLGLEMGADEYITKPFSPITLIARIKALYRR 120 Query: 119 --------SRG--HAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNT 167 ++G +A+ + T L ++ + V + I LT KE+ +++ L+ + Sbjct: 121 VSMSRETMTQGAQNAKFDVRTAHLKISTSTREVYLDEKLISDLTPKEFDLLKTLAQKPMQ 180 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++E L ++D + + +D I KLR+KL A G ++TVWG GY ++ D Sbjct: 181 VFSREQLLQIVWDYEYYGDERTVDAHIKKLRQKLE--AVGPQVVQTVWGVGYKFDDSKID 238 Query: 228 E 228 E Sbjct: 239 E 239 >gi|187479378|ref|YP_787403.1| two-component response regulator [Bordetella avium 197N] gi|115423965|emb|CAJ50518.1| two-component response regulator [Bordetella avium 197N] Length = 217 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 104/186 (55%), Gaps = 3/186 (1%) Query: 44 EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103 E+DAI++DL L D G +LR +R TPV +L+ +++D+VRGL GADD+++KPF Sbjct: 33 EYDAIVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPF 92 Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 EEL AR+ A+VRRSRG + G LS + +++ + G + LT +E+ + L Sbjct: 93 ALEELEARLTALVRRSRGRQHPRLQCGSLSYDGESRAFTLDGSLLFLTPREHAALAALLT 152 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 R + K ++ E I+V + +LRKKL AG I TV G GY+L Sbjct: 153 RSGYPVDKAQLFGKVFTHDSEANPDAIEVVLHRLRKKL---AGSDVRIVTVRGLGYMLES 209 Query: 224 NAKDET 229 A++ + Sbjct: 210 VARESS 215 >gi|46199299|ref|YP_004966.1| two-component response regulator [Thermus thermophilus HB27] gi|46196924|gb|AAS81339.1| two-component response regulator [Thermus thermophilus HB27] Length = 227 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD +A +E LK F V G +G+ + + D ++LDLGL D+ G E Sbjct: 3 RILLIEDDPEVARLVEAELKEAGFQVDWAKTGMEGLIRHREGKPDLVVLDLGLPDLDGAE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A TP+ +L+ +++ KV L GADDY+ KPF+ EL+ARI+ +R G Sbjct: 63 VARRIR-ATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAELLARIQVQLRHKEG 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ G L + + V + + L+ KE+ ++ LL R + ++ Sbjct: 122 --SEVLAVGQLELYPRKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWGR 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++DV + LR KL AG Y+ TV G GY +R ++E Sbjct: 180 PLGKDSNVLDVHMANLRAKLRE-AGAYGYLRTVRGVGYAVRPGRREE 225 >gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 223 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 8/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ + I + L+ E + V G + ++ E D +ILD+ L D G+ Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGNEALQRWA-EEPDVLILDVMLPDTDGY 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 ELLRVFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNHAELILRVKNMARRVM 119 Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 +I G+L + + V V G I LT +E+ + +L + ++ L Sbjct: 120 KQGVPKDNKIIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASHPQRVFMRDELLE 179 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL A+G + I+T++G GY L Sbjct: 180 KVWGFEYTGNTRAVDIMVQRLRKKLG-ASG--DSIKTIYGVGYKL 221 >gi|55981331|ref|YP_144628.1| response regulator [Thermus thermophilus HB8] gi|55772744|dbj|BAD71185.1| response regulator [Thermus thermophilus HB8] Length = 227 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 4/227 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIEDD +A +E LK F V G +G+ + + D ++LDLGL D+ G E Sbjct: 3 RILLIEDDPEVARLVEAELKEAGFQVDWAKTGMEGLIRHREGKPDLVVLDLGLPDLDGAE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R A TP+ +L+ +++ KV L GADDY+ KPF+ EL+ARI+ +R G Sbjct: 63 VARRIR-ATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAELLARIQVQLRHKEG 121 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 ++ G L + + V + + L+ KE+ ++ LL R + ++ Sbjct: 122 --SEVLAVGQLELYPGKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWGR 179 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + ++DV + LR KL AG Y+ TV G GY +R ++E Sbjct: 180 PLGKDSNVLDVHMANLRAKLRE-AGAYGYLRTVRGVGYAVRPGRREE 225 >gi|317496245|ref|ZP_07954605.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316913820|gb|EFV35306.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 233 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A ++ LK E ++V + + GE +EL D I+LDL L G E Sbjct: 5 KILVVDDEEPIAKILDFNLKKEGYDVIIANDGERAVELAFSENPDLILLDLMLPKKDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R AK + P+ +L+ +S DKV GL+ GADDY++KPF+ EL+AR++ +RR Sbjct: 65 VCREVR-AKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVLK 123 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + S + D+ + DA ++ G I LT +E+ + L+ LT+E Sbjct: 124 QQEDVEEEKTSELAIKDIVIYPDAYVIKKNGKEIDLTRREFDLFYYLAQHPGQVLTRENL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ +V+ +DV + +LR+K+ + YI T G GY + E Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGYFIGE 232 >gi|315127257|ref|YP_004069260.1| response regulator (activator) in two-component regulatory [Pseudoalteromonas sp. SM9913] gi|315015771|gb|ADT69109.1| response regulator (activator) in two-component regulatory [Pseudoalteromonas sp. SM9913] Length = 230 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 11/232 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+EDD L + L+ V V + G++ D IILD+ L GF Sbjct: 3 KILLVEDDLGLQQLTKDYLEHNGLEVDVLERGDEVFPYLSENHVDLIILDVMLPGKDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K + P+ +L+ D+V GL+ GADDY+ KP L+ARI A++RR + Sbjct: 63 VCRQVR-DKYTLPILMLTAKGEDFDQVIGLELGADDYVIKPAEPRVLLARISALLRRGQP 121 Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178 +++ + GDLS++ ++ V++ G I LT E++++ LL+ L++E H+ Sbjct: 122 SVKAIEELQFGDLSIDKTSRIVKLSGVEIVLTSHEFELLWLLASNAGEVLSREHVHQHMI 181 Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 YDG D + +DV + ++RKKL + + I+TVWG+GY+ +A D Sbjct: 182 GREYDGLD----RTVDVRVSRIRKKLGDNSDKPYRIKTVWGQGYLFVSDAWD 229 >gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] Length = 240 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 12/236 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL+ED+K + ++ L+ E + V G++ +E + + FD IILDL L + G Sbjct: 7 RILLVEDEKTIREAVSAYLEREGYFVRGVGDGQNALEEFEKHSFDLIILDLMLPKLSGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R + P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA++RR+ Sbjct: 67 VCRAVRETS-NVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHS 125 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 A+ + G L +++ V V+ I LT E++++ L+ T+ E Sbjct: 126 EAEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARYPGRVYTRMELVEKV 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230 L + ++G + + ID + LR KL + ++ TV G GY A T Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFEAPAGASTS 237 >gi|326201364|ref|ZP_08191236.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988932|gb|EGD49756.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 123/227 (54%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IED++++ +++ K NF V GE+G+ + D ++LD+ L I GF+ Sbjct: 4 KVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGISGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR + +L+ DK++GL+ GADDY+ KPFN EL+ R ++++RR G Sbjct: 64 VCETLRKELPGVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRRLVG 123 Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S + +G + L ++ V + I LT KE+ ++++ KN T++ L+ Sbjct: 124 KGTSDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPKEFFLLKIFLENKNKAFTRDELLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + KI+DV I +LR K+ + +IETVWG GY R+ Sbjct: 184 KIWGYDYMGDTKIVDVNIRRLRSKIEDKDSHGMFIETVWGIGYRWRK 230 >gi|269926598|ref|YP_003323221.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269790258|gb|ACZ42399.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++++D+K++ I LK++ +NVY GE+ I L + ++ D ++LDL + + G EV Sbjct: 6 IVVVDDEKSILKYISQQLKAKGYNVYPGMNGEEAISLVEQHDPDLLLLDLKMPVMNGLEV 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 + LR P+ ++S +E V L SGADDY+ KPF++EEL AR++ +RR+ Sbjct: 66 CKRLREWS-KVPIIVISAYDDVEYVVEALNSGADDYVRKPFHQEELFARVKTQLRRAEER 124 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 QS+ G L++N + V + + LT EY ++E L +T +M LN + Sbjct: 125 PSQQVQSVFRCGPLTINFSRRQVTLNDEEVKLTPTEYSILEQLVQNAGKVMTHQMLLNRV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + + V+I +LR+KL G +I T G GY Sbjct: 185 WGPEYTEENEYLRVYIGRLRRKLDPGPNGPKFIVTEQGVGY 225 >gi|254426228|ref|ZP_05039945.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188651|gb|EDX83616.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 227 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 1/222 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++EDD A + + L V + ++ L ++D +ILD L + G Sbjct: 1 MIILIVEDDPAQLRPLCIALSESGHLVDGVENAQEAQWLVSHKDYDLLILDWMLPVLSGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + R PV +L+ + DKV GL +GADDY+ KP + EL+AR+RA+ RRS Sbjct: 61 SLCQHYRTLGKIAPVMMLTAKDTTADKVVGLDAGADDYLVKPVDIPELLARVRALGRRSP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + GDL +N T+E Q I L+ +E+ ++E L R +T++ L+ Sbjct: 121 QWHGDRLSLGDLYLNTSTLTLERQKSCIRLSSREFHLMEYLMRRSGQVITRDNIEQTLWI 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 EPE + I +LR++L N G K++++TV+G GY L+ Sbjct: 181 WGTEPESNAVTALIWRLRQRL-NELGAKSWLKTVYGTGYRLQ 221 >gi|168183301|ref|ZP_02617965.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237793939|ref|YP_002861491.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673496|gb|EDT85457.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229261920|gb|ACQ52953.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 230 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + +E+ L +E +NV+ G++ +E+ + E + ++LD+ + D+ G EV Sbjct: 5 ILVVDDEKEIRDLLEINLTNEGYNVFKARYGKEALEILEREEVNLMVLDIMMPDMDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + R K S P+ +LS D++ G+ +GADDY+ KPFN EL RIRA++RR+ Sbjct: 65 CKRAR-QKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFL 123 Query: 123 AQSLIVTGDL----SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ ++ S+ +D K V + + I LT +E++++ LL+ + + E Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V + +LR K+ G I TVWG GY Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKIEQYMEGSKVIHTVWGVGY 226 >gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei] Length = 223 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 2/219 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD L + L+ E F V GE+ ++ FDAIILD+ L + GFEV Sbjct: 5 ILIVDDDTELTDLLVQYLEPEGFEVVCVHDGENAVKKALNQPFDAIILDVMLPKLNGFEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+A+R + TPV +L+ D++ GL+ GADDY+ KP N ELVAR+RAI+RR++ Sbjct: 65 LKAIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123 Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182 + + +D +++ G + LT E+ ++E+L +KE + + Sbjct: 124 PAQRPIIEHQGILVD-ESLPNHGEVLELTNAEFNILEMLIKSPGQAFSKEELTEYALGRK 182 Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + IDV I LR KL + G+ I+TV G GY+ Sbjct: 183 YTAYDRSIDVHISNLRNKLGDNEEGEPIIKTVRGFGYMF 221 >gi|163849376|ref|YP_001637420.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222527373|ref|YP_002571844.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670665|gb|ABY37031.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222451252|gb|ACM55518.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 230 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 5/224 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+I+D + I L+ + V G +G+ + + D ++LD+ + + GF Sbjct: 5 ILIIDDHLNVRTMIADYLQEIGYRVVTASDGAEGLIIARRVRPDLVLLDIMMPKLDGFGF 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L+A R + PV +L+ DKV GL+ GADDY++KPF+ +ELVARIRA++RR+ Sbjct: 65 LQAYR-REHQAPVILLTARIDETDKVVGLELGADDYVTKPFSLKELVARIRAVLRRTAAA 123 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q + G+L +N + V V I+LT E+ ++ LL T+E L HL Sbjct: 124 RQPNEEQPLRIGNLELNRATRMVTVDERPIYLTPSEFALLALLMASPGRVYTREQLLEHL 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 E + IDV I LR+K+ YIETV+G GY R Sbjct: 184 QGNSYEGVERTIDVHIRNLRRKIEPDPTNPTYIETVFGIGYRCR 227 >gi|326792918|ref|YP_004310739.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543682|gb|ADZ85541.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 232 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+ +DDK + +SI L L+ E + G + +E + E I++D+ + + G Sbjct: 5 VLVCDDDKLIVNSIVLHLQKEGYRTLKAYNGVEALEAIEKQEVHLILMDIMMPQLDGLSA 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R K + P+ ILS S DK+ GL GADDYI+KPFN EL+AR+R+ +RR Sbjct: 65 TLKIRQEK-NIPIIILSAKSEDTDKIAGLNLGADDYITKPFNTFELLARVRSQLRRYTKL 123 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT-KEMFLN 176 + L++TG L ++ A TV V G + LT EY++++ L + L+ +++ N Sbjct: 124 GAMQQTPQLLMTGGLCMDTGANTVYVDGELVRLTPTEYKILQYLMINMGQVLSMHQIYEN 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D PE + V I +LR+K+ YI+ VWG GY++ + Sbjct: 184 VWHDTPFAPE-NTVAVHIRRLREKIEINPKEPKYIKVVWGSGYLVEK 229 >gi|291525415|emb|CBK91002.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528479|emb|CBK94065.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 217 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL++ED+K ++ I L L ++ G + ++ + FD IILD+ L + GF Sbjct: 2 IEILIVEDEKPISDLIRLNLMKAGYSCTCAFDGMEAADILEERNFDLIILDVMLPKLNGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ ++ + PV L+ ++++D++RGL SGA+DY+ KPF EL+AR+ ++RR Sbjct: 62 ELMEYIK--PLGIPVIFLTAKATLDDRLRGLTSGAEDYMVKPFEIVELLARVNIVLRRYN 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q L D++++ + V G I LT KE++++ELL KN TL +E ++ Sbjct: 120 KMEQQLTFK-DIAIDTKNQNVSKAGKHIELTPKEFELLELLMRNKNITLFREKIYEEIWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +D+ I +LRKKL + ++TV+ GY L E Sbjct: 179 SEYSVESRTLDLHIQRLRKKLDIG----DSLKTVFKAGYRLEE 217 >gi|260435319|ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] Length = 262 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ A+ + + L+ + V + GE +E+ D ++LD+ L + GF V Sbjct: 22 ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEQALEMFHNESPDLVVLDVMLPKLDGFAV 81 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR RG Sbjct: 82 CRRLR-AESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 140 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +A Q ++ GDL V+ + + V RI+LT E+ ++ELL + + Sbjct: 141 NAVVESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 200 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 201 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 250 >gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 231 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 133/226 (58%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ LK E ++ V G + +++ + +FD I+LDL L +I G E Sbjct: 5 KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGLE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R + ++ PV +++ DKV GL+ GADDYI+KPF+ EL+AR++A++RRS Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++I GD+ VN + V + LT KE+++++LL K LT+E+ L+ + Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVAKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + +DV I LRKK+ + YI+T+ G GY N Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230 >gi|58040033|ref|YP_191997.1| two component response regulator [Gluconobacter oxydans 621H] gi|58002447|gb|AAW61341.1| Two component response regulator [Gluconobacter oxydans 621H] Length = 241 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 9/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD+ + + L+ +F V + + + ++LDL L G EV Sbjct: 9 LLVVDDDREIRELLSQFLERNHFRVTAARDAREARKAWANGHYQLVVLDLMLPGESGLEV 68 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R LR ++ + P+ +L+ MS D++ GL+SGADDY++KPFN EL+ARIRA++RR+ Sbjct: 69 ARWLR-SQDNVPIIMLTAMSDETDRIIGLESGADDYVAKPFNPRELLARIRAVLRRTVDV 127 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + G + + + G + LTG EY ++ L R N LT++M Sbjct: 128 EDKRQAADTRKIHFAGWCLDPVRRRLLNPDGAEVSLTGGEYDLLMALLERANRVLTRDML 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L L + P + IDV I +LR+KL + I+TV G GYVL Sbjct: 188 LELLRGRQAGPFDRAIDVAISRLRRKLEDDGRNAQVIKTVRGGGYVL 234 >gi|85059060|ref|YP_454762.1| DNA-binding transcriptional regulator PhoP [Sodalis glossinidius str. 'morsitans'] gi|84779580|dbj|BAE74357.1| two-component response regulator protein [Sodalis glossinidius str. 'morsitans'] Length = 223 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 116/219 (52%), Gaps = 1/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L+IED+ L H + + ++ V + + D I+DLGL D G Sbjct: 1 MRVLVIEDNSLLRHHLMVQMREMGHQVDAAADAREADYFLNEHPPDIAIVDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++R R ++ P+ +L+ +DKV L++GADDY++KPF+ EE+VAR++A++RR+ Sbjct: 61 NLIRRWRSHQVKIPLLVLTAREGWQDKVTVLEAGADDYVTKPFHLEEVVARMQALMRRNS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A +I ++L + + + I LT EY +IE L ++K+ + LY Sbjct: 121 GLASQVIELPPFLIDLSRRELMINEVNIRLTAFEYTIIETLIRNAGKVVSKDSLMLQLYP 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E IDV + +LRKK+ A I TV G+GY Sbjct: 181 DAELRESHTIDVLMGRLRKKMQ-ANYPYEVITTVRGQGY 218 >gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [uncultured actinobacterium HF0770_13M05] Length = 224 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 120/220 (54%), Gaps = 7/220 (3%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 ++EDD ++ + L++ F+V+ + E +++ D +I+D L + G + + Sbjct: 1 MVEDDADISSLLRFSLENTGFSVFESPSAEAAMQILTERRTDLVIIDWMLPGMDGLNLTK 60 Query: 65 ALR----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR KI P+ +L+ S D ++G SG DDYI+KPF+ EL+AR+ A++RRS Sbjct: 61 TLRNRADTQKI--PIIMLTARSDEADAIQGFDSGVDDYITKPFSPRELIARVNALLRRST 118 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A SLI + +S+N T+++ G ++L + Y +++ L N L++ L+ + Sbjct: 119 DGAGSLIESNGMSLNTHNHTLQINGENLYLKPRVYGLLQYLMKNPNRILSRNQLLDGAWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 E + +DV+I +LRKKL +G I+T+ G GYV Sbjct: 179 RSVYVEERTVDVYIVRLRKKLE-PSGKSAVIKTIHGVGYV 217 >gi|241766536|ref|ZP_04764398.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241363231|gb|EER58800.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 229 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 123/227 (54%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++LL+EDD + +++ L + G + DA++LDL L + G Sbjct: 5 MQLLLVEDDPTMQVTLQRALARRGMEITAVGDGPAALNQWVARPPDAVVLDLTLPGLDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ R + TPV IL+ ++ D+V GL +GADDY+ KPF+ +EL AR+RA++RRS Sbjct: 65 QVLQQARARGLRTPVLILTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALLRRSS 124 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A+ + G + + D+ + G + LT +E ++ L ++ +TKE Sbjct: 125 DATPSAEHSVQIGAIRYDKDSGALYRNGEVMELTPRELALMHALLVQPGHAVTKERLYEL 184 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ G+ + + + I+V + +LRKKL AG + T+ G GY+LR + Sbjct: 185 VFPGQLDVQYEAIEVVVYRLRKKL---AGTGLTLMTLRGLGYLLRAD 228 >gi|154507667|ref|ZP_02043309.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC 17982] gi|153797301|gb|EDN79721.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC 17982] Length = 225 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD A++ + L E ++V G + L D ++LDLGL D+ G +V Sbjct: 4 VLLVEDDPAISEPLARALGREGYDVRAHATGAEA--LADVRGVDLVVLDLGLPDMDGLDV 61 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R + P+ IL+ + D V GL +GADDY++KPF EL+AR+RA++RR Sbjct: 62 AREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQAAE 121 Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + D+ +++ A V + LT KE+ ++ +L + + ++ + ++ Sbjct: 122 PVEGELRAQDIRMDVAAHRAFVGDVELSLTAKEFDLLRVLLREAGSVVARDTLMREVWGS 181 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 K +D+ + LR+KL + A +YI TV G G+ ENA+ Sbjct: 182 DPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRF-ENAR 225 >gi|254285882|ref|ZP_04960844.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226] gi|150424064|gb|EDN16003.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226] Length = 228 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD L + +L+ E F + + GE G+ E D I+LD+ + + G E Sbjct: 4 ILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVS-DEIDLILLDVMMPKLNGMET 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 L+ LR K +TPV +L+ D+V GL+ GADDY+ KPF+ EL+ARIRAI+RR++ Sbjct: 63 LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNG 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I D+ V + QG + LT E+ ++ TLTKEM + Sbjct: 122 LAPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ID+ + LRKKL + GK I+T+ GRGY++ Sbjct: 182 LGKHLAAFDRAIDMHVSNLRKKLPDRPDGKARIKTLRGRGYLM 224 >gi|103486311|ref|YP_615872.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976388|gb|ABF52539.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 232 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLIEDD+A+A I E F+V T GE + L + D ++LD + +PG EV Sbjct: 6 LLLIEDDEAIAELIVWHFAREGFSVRQTPDGEQALVLVEERVPDIVLLDWMIESLPGIEV 65 Query: 63 LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R LR S P+ +L+ ED++RGL++GADDY++KPF+ ELVAR+ A++RR R Sbjct: 66 CRRLRRNPKSANVPIIMLTARGEEEDRIRGLETGADDYVTKPFSPRELVARVSAVLRRLR 125 Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++ D+ ++ A V G + + E++++ ++ L+ ++ Sbjct: 126 PALAGEMLSYADIELDSVAHKVVRGGQVVTMGPTEFRLLRHFMEHPGRVFSRGQLLDSVW 185 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E++ +DV I +LRK + N G + I TV GY L Sbjct: 186 GQDSDIELRTVDVHIRRLRKAI-NLPGTSDIIRTVRSAGYAL 226 >gi|78064733|ref|YP_367502.1| two component transcriptional regulator [Burkholderia sp. 383] gi|107024522|ref|YP_622849.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|115350122|ref|YP_771961.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|116688099|ref|YP_833722.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|134294208|ref|YP_001117943.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|161523255|ref|YP_001578267.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|167587959|ref|ZP_02380347.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] gi|170699024|ref|ZP_02890081.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170731448|ref|YP_001763395.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|171315856|ref|ZP_02905087.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172059140|ref|YP_001806792.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|189351972|ref|YP_001947600.1| signal transduction response regulator [Burkholderia multivorans ATCC 17616] gi|206558411|ref|YP_002229171.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|221202212|ref|ZP_03575247.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] gi|221208727|ref|ZP_03581726.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221214321|ref|ZP_03587293.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|254246669|ref|ZP_04939990.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|254251001|ref|ZP_04944319.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158] gi|77965478|gb|ABB06858.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] gi|105894711|gb|ABF77876.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|115280110|gb|ABI85627.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] gi|116646188|gb|ABK06829.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|124871445|gb|EAY63161.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124893610|gb|EAY67490.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158] gi|134137365|gb|ABO53108.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] gi|160340684|gb|ABX13770.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|169814690|gb|ACA89273.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] gi|170136060|gb|EDT04331.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171099045|gb|EDT43830.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171991657|gb|ACB62576.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] gi|189335994|dbj|BAG45064.1| signal transduction response regulator [Burkholderia multivorans ATCC 17616] gi|198034448|emb|CAR50313.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|221165976|gb|EED98450.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|221171359|gb|EEE03807.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221178006|gb|EEE10418.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] gi|325523588|gb|EGD01882.1| two-component regulatory system, response regulator protein [Burkholderia sp. TJI49] Length = 230 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 124/229 (54%), Gaps = 12/229 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57 MR+LLIEDD+ +A I+ L+ F V D+ DGI + + +ILDLGL I Sbjct: 1 MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALAQNRHELVILDLGLPGI 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G +L R TPV +L+ + D+++GL SGADDY+ KPF EL ARIRA++R Sbjct: 58 DGMTLLTRFRQTNRHTPVIVLTARDELNDRIQGLNSGADDYMLKPFEPAELEARIRAVMR 117 Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 RS H+ + + G + ++ + + + L+ +E+ ++E+L LR ++K Sbjct: 118 RSGPHSDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +HL + I+V++ ++RKKL + I TV G GY+L+E Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLEQC---RVEIVTVRGFGYLLQE 223 >gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 231 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++ LA ++ L+ E + V V G G+E + D I+LD+ L + GF V Sbjct: 4 ILIVEDERTLAETLRYNLEREGYTVVVASDGVQGLEQARREPPDLIVLDIMLPRLDGFSV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119 R LR + P+ +L+ D++ GL+ GADDYISKPF+ E +ARIRAI+RRS Sbjct: 64 CRILR-QESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIMRRSERQ 122 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + ++ G L V+ ++ + L KE+ ++ L + L++++ L + Sbjct: 123 PRTSEREVLNAGALRVDTGSRRAWRDNQELTLPQKEFDLLTCLVRNRGIALSRDLLLERV 182 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + +DV I LR+K+ YI+TV G GY Sbjct: 183 WGPDFIGDSRTVDVHIRWLREKIEPNPAQPCYIQTVRGVGY 223 >gi|295092131|emb|CBK78238.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 230 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DDK L ++ + EN N V G+DGI L ++ I+LD+ + + GFE Sbjct: 3 KILIIDDDKELCELLQRSVLVENINADVCHSGKDGIFLLSTKQYQLIVLDIMMPGLDGFE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K + P+ +L+ S KVRGL++GADDY++KPF+ +E VAR+ +++RRS Sbjct: 63 TMERIR-EKSNIPILMLTAKSDSLSKVRGLRAGADDYLTKPFDVDEFVARVISLIRRSTQ 121 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + L+ G L +NLD +V + L KE++++ L+ + LTK+ Sbjct: 122 FSVIDDTFGQLVYKG-LEINLDEHSVTTEKGTFELPHKEFELLLYLARNQGKILTKKQIY 180 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + I V I KLRKK+ + + I+TV G GY Sbjct: 181 EAVWNEEYCFDDANIMVMISKLRKKIEPDSDKPSIIQTVKGMGY 224 >gi|260682198|ref|YP_003213483.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile CD196] gi|260685797|ref|YP_003216930.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile R20291] gi|260208361|emb|CBA60855.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile CD196] gi|260211813|emb|CBE02200.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile R20291] Length = 220 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 19/224 (8%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ++L+ED+ LK++ V + G+ GIEL K E D IILD+ + + GFEV Sbjct: 4 VMLLEDE----------LKAKGHEVLIAYDGQAGIELSK-QEPDLIILDIMMPKMNGFEV 52 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 +A+R + P+ LS S DK++GL G DDY++KPF EL+ARI A +RR + Sbjct: 53 CQAIR-DDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKRS 111 Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +S + G L + + + +++ G I LT EY ++ELL+L ++E Sbjct: 112 QYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQIY 171 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + + + K+R K S K YI TVWG GY Sbjct: 172 EKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGY 215 >gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 223 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 131/222 (59%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 ++L+IED++ + ++ L++ + V V + G+ G+E + I+LD+ L DI G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDIGIILLDIMLPDISGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R K PV +++ DK+ G + GADDY+ KPF+ +E+VAR++AI+ R+ Sbjct: 63 SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTS 121 Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G ++ + +S+N+ ++ V V G +I LT KE+ +++LL K +++E LN ++ Sbjct: 122 GESEVEKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ +D I +LR+KL + I+TVWG GY L Sbjct: 182 GYDFYGDLRTVDTHIKQLREKLGEK---RKLIKTVWGIGYKL 220 >gi|229014033|ref|ZP_04171157.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228747289|gb|EEL97168.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 242 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 124/224 (55%), Gaps = 9/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+E+ K + I+LD+ + I G + Sbjct: 15 ILIVDDEKEIRKLIAIYLKNEGYEVLQAVDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 74 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++V +I+ P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 75 --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +S+ GD+ +N+ + V + + LT +E++++ELL+ + L Sbjct: 133 MSGTSVKDESVFEVGDIKINIVTRQVIIANEEVKLTPREFEVLELLARNQGMVLNAAQIY 192 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I K+R+K+ YI+TVWG GY Sbjct: 193 ERVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGY 236 >gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria monocytogenes FSL J2-071] gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL S4-120] gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria monocytogenes FSL J2-071] gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99] gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL F2-208] gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL S4-120] gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL N1-067] gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL S4-171] Length = 237 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 128/232 (55%), Gaps = 15/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ L E F+VY G++ +EL + + D I+LD+ L G E Sbjct: 5 KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +++ S DKV GL+ GADDY++KPF+ EL+AR++A +RR Sbjct: 65 VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR--- 120 Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 H+Q S + G L ++ DA +G I LT +E++++ L+ +T Sbjct: 121 HSQVSSSAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMT 180 Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +E L ++ +V+ +DV + +LR+K+ + ++ T G GY LR Sbjct: 181 REHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLR 232 >gi|146283048|ref|YP_001173201.1| two-component response regulator [Pseudomonas stutzeri A1501] gi|145571253|gb|ABP80359.1| probable two-component response regulator [Pseudomonas stutzeri A1501] Length = 225 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 114/221 (51%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD +A I L ++ V L + FD +ILDLGL D G Sbjct: 1 MHVLLAEDDALIASGIVAGLNAQGLIVDHAATAAAAEALLRAAHFDVLILDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR + PV +L+ ++ D+V GLQ+GADDY+ KPF+ EL AR+ ++RR Sbjct: 61 ALLRRLRQQGLELPVLVLTARDAVSDRVTGLQAGADDYLLKPFDLRELAARLHTLMRRMS 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + +LI G LS + + G + L+ +E +++ L + L+ E + +Y Sbjct: 121 GRSVNLIEHGRLSYDPSRCEARLDGRLVDLSRREQALLQALLNNQGRVLSSEQLKDAVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D+ E ++V I LR+KL G +ETV G GY L Sbjct: 181 FADDVESNALNVHIHHLRRKL-----GSGIVETVRGLGYRL 216 >gi|15964775|ref|NP_385128.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309662|ref|ZP_07589314.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307319459|ref|ZP_07598886.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|15073953|emb|CAC45594.1| Probable response regulator [Sinorhizobium meliloti 1021] gi|306894831|gb|EFN25590.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306899874|gb|EFN30497.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 233 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 2/225 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++EDD A + + GE G+ + +D +++D L G Sbjct: 5 MKILIVEDDLEAAAYLAKAFREAGIVCDHASDGESGLFMASENAYDVLVVDRMLPRRDGL 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR I TPV ILS + ++D+V GL++G DDY+ KP+ EL+AR+ + RR Sbjct: 65 SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 Q ++ GDL ++ + +V QG I L +E++++E L +T+ M L +++ Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 D +P+ +IDV + +LR K+ + T+ G GY+++++ Sbjct: 185 DYHFDPQTNVIDVHVSRLRSKIEKDF-DPPLLRTIRGAGYMIKDD 228 >gi|228907600|ref|ZP_04071457.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 200] gi|228852092|gb|EEM96889.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 200] Length = 242 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + I++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRVR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G ++LT EY ++ L++ KN T E Sbjct: 135 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGDTMNLTKTEYDILYLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238 >gi|148254885|ref|YP_001239470.1| putative two-component response regulator [Bradyrhizobium sp. BTAi1] gi|146407058|gb|ABQ35564.1| putative two-component response regulator [Bradyrhizobium sp. BTAi1] Length = 224 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L+ + L + V D + + A+ILDLGL D G Sbjct: 1 MRLLIVEDNVELSKLLSQGLGRAGYEVDAVSSAADARDALSGIRYAAMILDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR PV +L+ ++D+V GL+SGADDY+ KPF EELVAR+ AI+RR Sbjct: 61 AVLTALRRGSDPLPVIVLTARGGLQDRVGGLRSGADDYLVKPFALEELVARLEAILRRPG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+L + +++ V G + +E ++E+L R+ + K+ +H++ Sbjct: 121 QLLGRSLELGNLVYDTESRQTFVAGTPRTFSARELSVLEILLRRQGRVVPKKAVEDHIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++V++ +LRK+LS G I T+ G GY++ Sbjct: 181 LTGEVGSNAVEVYVSRLRKQLSE-YGATVVIHTIRGVGYMM 220 >gi|332525381|ref|ZP_08401542.1| two-component system response regulator [Rubrivivax benzoatilyticus JA2] gi|332108651|gb|EGJ09875.1| two-component system response regulator [Rubrivivax benzoatilyticus JA2] Length = 229 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++EDD L ++ L+ V + G+ + +DA++LDLGL G Sbjct: 5 MRLLIVEDDPDLGDALRAGLRQAGHAVDLFPDGQQADAALRGAPYDAVVLDLGLPGTDGV 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 LR R + +PV IL+ IE ++ GL SGADDY+ KP EL AR+RA+ RRS Sbjct: 65 TWLRRWRERGLDSPVLILTARDGIEQRIEGLDSGADDYLVKPIAIAELAARLRAMARRSA 124 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G +QS+ G L + +K V +G + L G+E ++E+L + L+K LYD Sbjct: 125 GRSQSVWTHGALRYDPASKQVHWRGQPVELRGRELALLEVLLMNPQRVLSKVQLQEKLYD 184 Query: 181 -GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 G EPE ++V I LR+K++ + TV G GY L DE Sbjct: 185 WGGAEPESNALEVHIHHLRRKIA-----PGIVRTVRGVGYALGAADGDEA 229 >gi|331013564|gb|EGH93620.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 164 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 94/162 (58%), Gaps = 1/162 (0%) Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++R LR + P+ IL+ + +DKV GL +GADDY+ KPF EEL AR+ A++RRS G Sbjct: 1 MIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSG 60 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 QS I G L ++L+ K + + LT EY+++E L L + KE + LY Sbjct: 61 FIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYPD 120 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 DE + +I+V + +LR+KL + K IETV G GY+ E Sbjct: 121 DDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 161 >gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 231 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 119/231 (51%), Gaps = 15/231 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD + + L FNV D GE+ ++L DA++LDL L G EV Sbjct: 6 ILVVEDDADIQQLVSYNLIKAGFNVTCADSGEEALQLLAREPIDAMVLDLMLPGKDGNEV 65 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 RA+R + P+ +L+ S +D V GL+ GADDY++KPF+ L+AR+ A +RR+ Sbjct: 66 CRAVRGQEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEAALRRTP 125 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 I + ++ V V G IHLT E+ ++ LL+ R +++ Sbjct: 126 EPVVDADEQAGFISRHGMDIHPGRHEVRVDGQEIHLTASEFTILALLAGRPGWVFSRQQI 185 Query: 175 LNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + YD P + +DV I LRKKL +A IETV G GY +RE Sbjct: 186 IDQVRGYDYSITP--RAVDVQIFGLRKKLGSAG---TCIETVRGIGYRIRE 231 >gi|219856745|ref|YP_002473867.1| hypothetical protein CKR_3402 [Clostridium kluyveri NBRC 12016] gi|219570469|dbj|BAH08453.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 233 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DDK L I + E+ + G DG+ + + ++ I+LD+ + + GF+ Sbjct: 6 KILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMDGFQ 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +R S P+ +L+ + KVRGL+SGADDY++KPF+ +EL+AR+ +++RR Sbjct: 66 TMEKIRQTS-SVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 124 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + H+Q L G L+++LD+++V Q L KE+ ++ + + LTK+ Sbjct: 125 FNTTGDHSQPLTYQG-LTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + I I +LRKK+ +G YI+TV G GY Sbjct: 184 EEVWGEAYVYDDSNIMAIISRLRKKIEPDSGAPYYIQTVKGIGY 227 >gi|46200280|ref|YP_005947.1| two-component response regulator [Thermus thermophilus HB27] gi|46197908|gb|AAS82320.1| two-component response regulator [Thermus thermophilus HB27] Length = 223 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 2/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD + + L+ E F V G + ++ D ++LD GL D+ G E Sbjct: 3 RVLLVEDDSQVGELVRRFLEREGFAVAWVRFGREALKRVGKEGADVVVLDRGLPDMEGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ LR PV +L+G + E +V GL GADDY+ KPF+ EL+ARI+A++RR+ Sbjct: 63 VLKGLRSLDPLLPVLLLTGRADEESRVEGLLEGADDYLGKPFSLRELLARIKALLRRAGK 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L V+L+ + ++G + L+ E ++ + + T+ L ++ Sbjct: 123 EGRRRF--GPLEVDLEGRRAYLEGEPLRLSPTEMNLLLVFAQAPGRVFTRGELLERVWGP 180 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E +++D ++ LRKKL + +IETV G GY Sbjct: 181 EFEGSERVVDAYVRLLRKKLRDDPEAPRFIETVVGLGY 218 >gi|164688051|ref|ZP_02212079.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM 16795] gi|164602464|gb|EDQ95929.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM 16795] Length = 232 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 123/227 (54%), Gaps = 5/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 +IL++ED+ + + + LK E + + G + IE + + + +LD+ L D+ G Sbjct: 4 KILVLEDEIGIRSFVSINLKREGYEIIEAGTGAEAIEKINENNDISIALLDVMLPDMSGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV + +R + +L+ + EDK+ G SGADDYI KPF+ +EL+ R+ A++RR + Sbjct: 64 EVCKYIRQKFDQVGIIMLTAKAQEEDKLEGFISGADDYIVKPFSIKELLVRVAALLRRVK 123 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S+ IV+ ++LD + + G I LT E+ +++ L + +L+++ L Sbjct: 124 KEESSMKLNKIVSDPFELDLDKRKLFKNGKEIELTPTEFSIVKYLMVNAKQSLSRDQILT 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + KI+DV I ++R K+ + YI+T+WG GY R+ Sbjct: 184 EVWGNNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRK 230 >gi|158521941|ref|YP_001529811.1| two component transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510767|gb|ABW67734.1| two component transcriptional regulator, winged helix family [Desulfococcus oleovorans Hxd3] Length = 233 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + + L L+ + + V + GE +E+ D ++LDL L I G E Sbjct: 5 KILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDGLE 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V RA+R TP+ +LS D + GL+ GADDYI+KPF+ + L+ARIR+++RR Sbjct: 65 VARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRRQ 124 Query: 120 RGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + A +++ V+G ++++ TVEV G +I LT E+ ++ L+ R T+ Sbjct: 125 QAKAAPPDPGRTIAVSG-ITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFTRWQ 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + +DV I LRKKL + YIETV G GY RE Sbjct: 184 IVDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRFRE 230 >gi|33595492|ref|NP_883135.1| putative two-component system response regulator [Bordetella parapertussis 12822] gi|33599877|ref|NP_887437.1| putative two-component system response regulator [Bordetella bronchiseptica RB50] gi|33565570|emb|CAE40212.1| putative two-component system response regulator [Bordetella parapertussis] gi|33567474|emb|CAE31387.1| putative two-component system response regulator [Bordetella bronchiseptica RB50] Length = 236 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 R+L++EDD +A ++ L+ F G + L + FDA++LD+GL + G Sbjct: 10 FRVLIVEDDLTIAANLYDYLQVRGFVPDAAYDGRSALALLDEHAFDAMVLDVGLPGMDGH 69 Query: 61 EVLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL ALRV + + PV +L+ ++DK+ G GADDY++KPF E+ AR+ A+++RS Sbjct: 70 AVLHALRVERRAALPVLMLTARDGLDDKLAGFAHGADDYLTKPFALAEVEARLLALIQRS 129 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 RG SL G L + + V V G +HLT K ++E+L +++E N L Sbjct: 130 RGAVVDSLRSFGPLQFDSATREVAVHGKPVHLTRKCGMIVEVLLRDPGRVVSREQLENAL 189 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + G D P + + LR+ L++A G + IETV G G+ L Sbjct: 190 W-GDDPPSSDALRSQVHLLRRALADA--GFDGIETVHGTGWRL 229 >gi|256855119|ref|ZP_05560480.1| two-component system response regulator [Enterococcus faecalis T8] gi|300862210|ref|ZP_07108290.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|256709632|gb|EEU24679.1| two-component system response regulator [Enterococcus faecalis T8] gi|300848735|gb|EFK76492.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] Length = 231 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 12/226 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DDK L H ++ L EN + G++GI K E+ +ILD+ + + GF+ Sbjct: 4 KVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL +R PV +L+ S KV GL+SGADDY++KPF+ +E +AR+ +++RR Sbjct: 64 VLEKIRETN-RLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTN 122 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S + +L+++L++++V + + L KE+ ++ + + LTK+ Sbjct: 123 FNSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFE 182 Query: 177 HLYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ EP V I I KLRKK+ + YI+TV G GY Sbjct: 183 KVW---QEPYVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGY 225 >gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 238 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ E + + + GE + ++ +ILD+ L + G E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR K STP+ +L+ ++V+G + GADDY+ KPF+ E++ R++AI+RRS Sbjct: 67 VCTRLRQVK-STPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + IV L + DA V GH I LT KEY+++ L+ + ++E Sbjct: 126 TAYLSKEPNPSNSIVFPHLIIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221 L +++ +++ +D + +LR+KL+ +A I TVWG GY L Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSAESAAMITTVWGVGYKL 234 >gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 232 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G I+LT EY+++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 185 ESVWKERAYESNNTVMVHITRLRNKIEENPKEPKFIQNVWGVGY 228 >gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989] gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989] Length = 228 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 132/223 (59%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++EDD+ + ++L L S N+ + + G+D + + + D ILDL L + G++ Sbjct: 3 RVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGYD 62 Query: 62 VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 +L+ +R +K S PV ILS DK+ GL GADDY++KPF+ EL ARIR+++RR Sbjct: 63 ILKFIR-SKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRR 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 S+ + + + G L ++LD + V ++ + LT KE+++++ L+ + +++E +N + Sbjct: 122 SKKDERLIQIHG-LCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQI 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I LRKKL N ++I++V GY L Sbjct: 181 WGYDFIGESRTLDVHINSLRKKLGNEYA--HWIQSVRQVGYRL 221 >gi|315660023|ref|ZP_07912881.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|315494924|gb|EFU83261.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 223 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 129/223 (57%), Gaps = 11/223 (4%) Query: 4 LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63 L+IEDD +AH + L L + + G++ IE + +FD I+LDL L ++ G EVL Sbjct: 6 LIIEDDIDIAHILSLTLTKMHIKTTLNFSGQEAIETLEKDQFDLILLDLMLPEVSGEEVL 65 Query: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123 ++ A ++ V ++S + +E+KVR L SGADDY++KPF+ +EL ARI +R + Sbjct: 66 SYIK-AHANSRVIVISAKTDVEEKVRLLSSGADDYLTKPFDTKELAARIDVQLRNLQQMP 124 Query: 124 QS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF---LNHL 178 + ++ DL+++ + V+V+ +++T EY ++ L L ++K+ + + Sbjct: 125 RQGDILTWRDLTIDKQTRKVQVKNQVLNVTNTEYDILCLFMLTPEQPISKQKIYENIQGI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 Y G D ++V I +RKKL+ A ++YI+TVWG G++L Sbjct: 185 YLGDDNT----VNVHISNIRKKLA-AFSDESYIKTVWGIGFML 222 >gi|297624289|ref|YP_003705723.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165469|gb|ADI15180.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 236 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 10/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD + S+EL L E F V +G+ L D +ILD+ L G+ Sbjct: 15 RLLLVEDDPGIRESLELGLGFEGFEVVTAASASEGLRLFAQEAIDVVILDILLPGSDGYR 74 Query: 62 VLRALRVA---KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 VL A+R K V L+ + +IED+VRGL+ GADDY+ KPF+ ELVARI A+ RR Sbjct: 75 VLEAIRTPHNPKREVAVLFLTALDTIEDRVRGLRLGADDYLVKPFSLAELVARIEALWRR 134 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +L D+ + D + G + L KE+ ++++L + +++E + L Sbjct: 135 LQRPVTAL-CAADVRLYPDKREAWRGGVPLELAPKEFALLQVLLEHRARVVSREALMQRL 193 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + R +P ++V + LR+ L G I TV G GY+L E Sbjct: 194 WGERVDP--NTLEVHVSSLRRAL----GDPPMIRTVRGYGYLLDE 232 >gi|295696419|ref|YP_003589657.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412021|gb|ADG06513.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 233 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D++ + + + L+ F V + G +E+ ++ I+LDL L ++ G Sbjct: 4 VKILVVDDEERIRRLVRMYLERNGFEVEEAEDGRTALEMALANDYAVIVLDLMLPELDGR 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 EV LR K TPV +L+ +++ G + GADDY+ KPF+ ELV R++A+++R Sbjct: 64 EVCAQLRKQK-DTPVIMLTAAGDEMNRIHGFELGADDYVVKPFSPRELVMRVKALIKRVH 122 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +G A+ + L++NL+++ V G + LT KEY+++ L+ R T+E L Sbjct: 123 QGPAEHELTQVFTFPHLTINLESRKVTADGQDVSLTPKEYELLCYLAQRPEKVFTREELL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219 +++ + + + +D I +LR+KL A+ I TVWG GY Sbjct: 183 RDVWNYQFYGDQRTVDTHIKRLREKLGKASQPAAAMIVTVWGVGY 227 >gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 224 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 120 KKTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|297561828|ref|YP_003680802.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846276|gb|ADH68296.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 217 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 118/221 (53%), Gaps = 4/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA ++ + L+ E V V G+ +E ++D ++LD L G Sbjct: 1 MRVLVVEDERVLADTVAVGLRREAMAVDVVYDGDAALEYTAVNDYDVVVLDRDLPGTHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +V RAL + + +L+ ++DKV GL GADDY++KPF EL+AR+ A+ RRS Sbjct: 61 DVARALVRESYNGRILMLTASDGVQDKVEGLTIGADDYLAKPFAFAELIARVHALGRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ ++++ V G + LT KE+ ++++L + T ++ E L +D Sbjct: 121 PPLPPVLERHGITLDPANHRVHRDGREVTLTPKEFAVLQVLMRAQGTVVSAEGLLEKAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +P ++ V + LRKKL G I+TV G GY L Sbjct: 181 ENADPFTNVVRVTVMTLRKKL----GDPPVIQTVPGAGYRL 217 >gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium] Length = 232 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ ED++ +A + + L+ E ++V G++ + + + D IILD+ + + G+ Sbjct: 4 ISILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQSIDLIILDIMMPKMDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R A+ + P+ LS +S DKV GL G DDYI+KPF ELVAR+ A +RRS Sbjct: 64 EVTRQVR-AQYNMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNAQLRRSM 122 Query: 121 --GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H Q S++ G++ ++ D +TV + G I LT KE+ ++ LL+ + E Sbjct: 123 KLNHPQADDKKSILEFGEIVISPDQRTVFLYGENIGLTPKEFDILYLLASHPKKVYSVEN 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++ + V I LRKKL I+TVWG GY Sbjct: 183 IFQQVWNDAYFGGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >gi|184200526|ref|YP_001854733.1| two-component response regulator MtrA [Kocuria rhizophila DC2201] gi|183580756|dbj|BAG29227.1| two-component response regulator MtrA [Kocuria rhizophila DC2201] Length = 228 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/220 (34%), Positives = 122/220 (55%), Gaps = 5/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+++DD AL+ I ++L SE+F VY D G E+ + + D I+LDL L + G Sbjct: 4 RILVVDDDAALSEMIGIILASEDFEPVYCYD-GSSAREVFRASDPDLILLDLMLPGMDGI 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 +V + +R A+ PV +L+ S D VRGL++GADDY+ KPF ELVAR++A +R Sbjct: 63 QVCQQIR-AESDVPVVMLTAKSDTADVVRGLEAGADDYVPKPFKPAELVARVKARLRPMD 121 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 RG Q I GD+ +++ TV G I LT E+ ++ L+ + +++ L ++ Sbjct: 122 RGVTQE-ITLGDIVIDVTGHTVTRGGEEIFLTPLEFDLLATLARSPHQVFSRDELLRDVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++++V + +LR K+ + TV G GY Sbjct: 181 GYPHAADNRLVNVHVQRLRSKVERDPENPEVVLTVRGIGY 220 >gi|75760136|ref|ZP_00740196.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900181|ref|YP_002448592.1| DNA-binding response regulator [Bacillus cereus G9842] gi|74492373|gb|EAO55529.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540655|gb|ACK93049.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 221 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 9/221 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + I L ++NF V V G +GI L + +D ++LD+ L DI G+ Sbjct: 3 HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R + P+ +L+G+ + E +++G + G DDYI+KPF+ + R+ A++RR Sbjct: 63 ICKIMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A +++ +L +N A V G++I LT KE+++I L + L++ LN + Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +V++ID I LRKKL G YI+TV G GY Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKL-----GITYIKTVKGIGY 217 >gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family protein [Pseudonocardia sp. P1] Length = 229 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 124/224 (55%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ A + ML+ E F V G D + D ++LDL L + G + Sbjct: 3 RVLIVEDEESFADPLAFMLRKEGFTTAVAANGNDALSEFDRNGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V +ALR ++ + PV +++ S DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCKALR-SRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121 Query: 119 SRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + G +S ++ G + ++++ V V G + L KE+ ++E L LT+ + Sbjct: 122 ATGETESGNGILEAGPVRMDVERHVVSVNGDDVPLPLKEFDLLEYLLRNVGRVLTRAQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + K +DV + +LR K+ + ++ TV G GY Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKVEDDPSTPKHLVTVRGLGY 225 >gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 245 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 5/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+ +DD ++A I++ LK + + G + ++ + FD +ILD+ + + GFE Sbjct: 20 RILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAFEKQPFDVVILDVMMPYVDGFE 79 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +R A+ P+ IL+ ED V G + GADDYI+KPF EL+AR+ +I+RR G Sbjct: 80 ACERIR-AQSDVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILRRVEG 138 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + A ++ G+L ++ V V+G ++LT E++++ L+ +E Sbjct: 139 YSARRAPPVVRVGELEIDEPRHRVSVRGSDVNLTPMEFELLYFLAANAGQVFDRETLFRE 198 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E ++DV + +LR+K+ I TV G GY L E Sbjct: 199 VWGYEYVGETNLVDVCVRRLREKVELIPSRPKIILTVRGVGYKLAE 244 >gi|255524527|ref|ZP_05391482.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186025|ref|ZP_06854430.1| subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] gi|255511823|gb|EET88108.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049293|gb|EFG88722.1| subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] Length = 220 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 5/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL ++DDK + I+ L+ N V ED + KF E+D I+LD+ + I GF+ Sbjct: 3 KILAVDDDKRILKLIKNALEINNHEVVTLQNAED-TPIEKFCEYDLILLDVMMPGIDGFK 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 + +R + + +P+ L+ + V+GL G DDYISKPF EL AR+ A +RR +R Sbjct: 62 LCEKIRNS-VDSPIIFLTAKTEESAIVKGLALGGDDYISKPFGVMELNARVEAYLRRQNR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + ++ +++++ D K + + G+ ++ T EY + E L+L + TK+ +YD Sbjct: 121 GKSTRKLIYENITIDFDKKEISIGGNAVNFTKNEYNICEYLALNRGKVFTKQAIFESIYD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +I +I +R K IETVWG GY+ + Sbjct: 181 LDSDTQFSVITEYIRLIRNKFKKFDCSP--IETVWGVGYMWK 220 >gi|297563700|ref|YP_003682674.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848148|gb|ADH70168.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 218 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 118/220 (53%), Gaps = 5/220 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ ALA ++ L+ E V V G+ G+E+ + +D I+LD L + G Sbjct: 1 MRVLVVEDEPALAETVAEGLRGEGMAVDVCHDGDTGLEMACVHGYDVIVLDRDLPVLHGD 60 Query: 61 EVL-RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V R + + V +L+ ++D+V GL GADDY++KPF EL+AR+RA+ RRS Sbjct: 61 QVCARVVEAPGVEARVLMLTAAGGLDDRVEGLDLGADDYLAKPFAYAELLARVRALGRRS 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 R A+ + L V+ + +T +G + L+ KE ++E L ++ + ++ Sbjct: 121 RPGARPRLSRAGLVVDTNRRTAFREGRELSLSPKELGVLEELLRADGAPVSTTHLVEKVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 D +P ++ V + LR+KL G I TV G GY Sbjct: 181 DAHLDPFSGVLKVVVHGLRRKL----GDPPVIRTVPGHGY 216 >gi|254391808|ref|ZP_05007003.1| two-component system regulator [Streptomyces clavuligerus ATCC 27064] gi|326443845|ref|ZP_08218579.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705490|gb|EDY51302.1| two-component system regulator [Streptomyces clavuligerus ATCC 27064] Length = 233 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 19/234 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC------KFYEFDAIILDLGL 54 MR+LL+EDD +A ++ +L F V GE+ + F I+LDLGL Sbjct: 1 MRLLLVEDDDHVAAALSAVLGRHGFQVVHARNGEEALRAVLPAAHPGRPPFGVILLDLGL 60 Query: 55 TDIPGFEVLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 D G++V LR KI STPV +++ S + ++ GL GADDY+ KP++ EL+ARI Sbjct: 61 PDQDGYQVCGKLR--KITSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIH 118 Query: 114 AIVRR------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 A+ RR + A + G +++ L + V V G + LT KE+ ++ LL+ R Sbjct: 119 AVSRRGGPGDDAPAPAGQALRLGPMTIELSTRRVSVDGTEVQLTRKEFDLLALLAQRPGV 178 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++ ++ E + ++V + LR KL A +ETV G GY L Sbjct: 179 VFRREQIISEVWRTSWEGTGRTLEVHVASLRAKLRMPA----LVETVRGVGYRL 228 >gi|167766603|ref|ZP_02438656.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1] gi|167711726|gb|EDS22305.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1] Length = 238 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D++ +A +E+ LK+EN+ VY D + + + D ILD+ L D+ GF Sbjct: 11 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ DK+ GL GADDY++KPF E+VAR++A +RR + Sbjct: 71 LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 129 Query: 122 HAQSLI---VTGDLSVN---LDAKTVE--VQGHRIHLTGKEYQMIE-LLSLRKNTTLTKE 172 ++ +I + +LS N L+ +T E + G + LT E+ ++ LLS N +E Sbjct: 130 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 189 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +F D I V I LR+KL++ + YI+T+WG GY Sbjct: 190 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGY 236 >gi|148273939|ref|YP_001223500.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831869|emb|CAN02839.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 234 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 124/221 (56%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+ +DD+ + ++ + L S +++ + G + + D ++DLG+ + G Sbjct: 1 MKILIADDDQQILRALRITLTSLGYDIVTAEDGAAAVRAAVAEKPDLYMIDLGMPRLDGV 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV++ALR+ + P+ ++SG S DKV L +GADDY++KPF+ +EL+ARIRA+ RR+ Sbjct: 61 EVIQALRLWS-TAPILVVSGRSGAADKVEALDAGADDYVTKPFSIDELLARIRALGRRAA 119 Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + D++V+L A+ V R+ LT E+Q++ELL + ++++ L + Sbjct: 120 ADEDRSATVSFADVTVDLAARVVTRGDQRVRLTPTEWQVLELLVRNPDRLVSRQTLLTEI 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + +++ +LRKKL ++ T G GY Sbjct: 180 WGPTHLNDSGYLRLYVAQLRKKLEPDPTHPRHLLTDPGMGY 220 >gi|113867801|ref|YP_726290.1| response regulator [Ralstonia eutropha H16] gi|113526577|emb|CAJ92922.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 232 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+IEDD +A + L + + +V V + G G+E +D +ILDL L G E Sbjct: 4 QVLVIEDDADIAELVRLQVSGLSCDVKVINHGRAGLEEALSRPYDLVILDLMLPGADGLE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117 + R LR TP+ +L+ S+ D+V GL+ GADDY++KPF+ EL AR++AI R Sbjct: 64 ICRRLRAEPRYTPILMLTARSTELDRVLGLEMGADDYLTKPFSVLELTARVKAIFRLVDT 123 Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + L +++D + V V+G I LT KE+Q++ + ++ L Sbjct: 124 LANPPSDGPRTVQVKALHIDIDKREVSVRGTPICLTAKEFQLLLYFASNPGRVFSRAQLL 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + I +LR K+ YI+TVWG GY Sbjct: 184 DQVWGYSHSGYEHTVSSHINRLRAKIELDPNEPEYIQTVWGVGY 227 >gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 224 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 120 KKTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 245 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ ++ +E L ++V GE+ +E+ D ++LD+ + + G+ Sbjct: 11 KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFSREHPDLVVLDVMMPKLDGYG 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR+ Sbjct: 71 VCQELR-KDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRADR 129 Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I GDL ++ + + V +G RI LTG E+ ++EL+ R ++ L Sbjct: 130 DTASGIPSSGVIHVGDLKIDTNKRQVYKRGERIRLTGMEFSLLELVVSRSGEPFSRSEIL 189 Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++ E V +++DV I +LR KL + I T G GY+ + Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRSKLEDDPSNPELILTARGTGYLFQ 238 >gi|251778829|ref|ZP_04821749.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083144|gb|EES49034.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 231 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 14/232 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++D++++ + I++ L EN+ V + G D I L K D I+LDL L D GF Sbjct: 1 MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV+ + P+ ILS + +K+ GLQ GADDYI+KPF+ EL+ RIRAI RR Sbjct: 61 EVIHEFQGINSEVPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 + +I G + + + + V + + T E+++I L+ Sbjct: 121 KAKAIGKNEVKNKTNDIIEKGFIKIIVPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 T+E L+ ++ + +D+ I ++R+KL G ++ I+T++G GY L Sbjct: 181 TREELLDKIWGYSFVGNTRAVDIHIKRIRQKL---IGNEDVIKTIYGVGYRL 229 >gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 224 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 120 KKTEAAVSHEVIEAGEIVICPKKRKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|251796377|ref|YP_003011108.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544003|gb|ACT01022.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ E + + + GE + L ++ I+LD+ L I G E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDYALILLDVMLPGIDGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR K +TPV +L+ ++V+G + GADDY+ KPF+ E++ R++AI+RRS Sbjct: 67 VCSRLRQVK-ATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + IV L + DA V G + LT KEY+++ L++ + ++E Sbjct: 126 TAFLTKEVNSSNNIVFPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221 L +++ +++ +D + +LR+KL+ + + I TVWG GY L Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPDAASMITTVWGVGYKL 234 >gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 119 KKTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|162138420|ref|YP_541172.2| transcriptional regulatory protein YedW [Escherichia coli UTI89] gi|218558823|ref|YP_002391736.1| transcriptional regulatory protein YedW [Escherichia coli S88] gi|218365592|emb|CAR03319.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli S88] gi|309702255|emb|CBJ01572.1| two-component response regulator [Escherichia coli ETEC H10407] gi|323961816|gb|EGB57416.1| heavy metal response regulator [Escherichia coli H489] Length = 223 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + + G DG+ L ++ IILD+ L + G+ Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR AK TPV L+ S++D+VRGL SGA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SL ++G L ++ +++V I LT KE+Q++ LL+ R + + + + ++ Sbjct: 120 ALNSSLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +DV I +LR K+ + K I T+ G GY Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LISTIRGMGY 216 >gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 226 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ILLIED++ + L + V Y D G DG+ L + IILD+ L + G Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++VLRALR A +PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 60 WQVLRALRTAH-QSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L + G L ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 119 VPAFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 219 >gi|153956437|ref|YP_001397202.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146349295|gb|EDK35831.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 231 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DDK L I + E+ + G DG+ + + ++ I+LD+ + + GF+ Sbjct: 4 KILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMDGFQ 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +R S P+ +L+ + KVRGL+SGADDY++KPF+ +EL+AR+ +++RR Sbjct: 64 TMEKIRQTS-SVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 122 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + H+Q L G L+++LD+++V Q L KE+ ++ + + LTK+ Sbjct: 123 FNTTGDHSQPLTYQG-LTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + I I +LRKK+ +G YI+TV G GY Sbjct: 182 EEVWGEAYVYDDSNIMAIISRLRKKIEPDSGAPYYIQTVKGIGY 225 >gi|94495738|ref|ZP_01302318.1| phosphate regulon response regulator [Sphingomonas sp. SKA58] gi|94425126|gb|EAT10147.1| phosphate regulon response regulator [Sphingomonas sp. SKA58] Length = 233 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL+EDD ALA + K E+F+V T GE+ + + + D ++LD + + G E Sbjct: 5 KMLLVEDDAALAELLIWHFKREDFDVSHTVDGEEALLMAQETVPDIVLLDWMVESLSGIE 64 Query: 62 VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR + P+ +L+ ED+VRGL++GADDY++KPF+ ELVAR+ A++RR Sbjct: 65 VCRRLRRMTGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A + D+ ++ V G I L E+++++ ++E L+ + Sbjct: 125 RPALAGETLTFADVEMDTVGHKVRRSGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E++ +DV I +LRK ++ ++ I TV GY L Sbjct: 185 WGQDSDIELRTVDVHIRRLRKAINADGQYQDIIRTVRSAGYAL 227 >gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 248 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ILLIED++ + L + V Y D G DG+ L + IILD+ L + G Sbjct: 23 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 81 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++VLRALR A S PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 82 WQVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 140 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L + G L ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 141 VPAFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 199 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 200 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 241 >gi|312961965|ref|ZP_07776462.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311283775|gb|EFQ62359.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 223 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 121/219 (55%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M IL++ED+ + + L+ ++ + G DG+ FD I+LD+ + + G+ Sbjct: 1 MNILVVEDEPKAGNYLLNGLQELGYSASLARDGVDGLHQALETPFDVIVLDVMMPKMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVLR LR + TPV L+ I D+++GL+ GADDY+ KPF+ ELVAR+R + RR Sbjct: 61 EVLRRLR-KETDTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + DL +++ + V G RI LT KE+ ++ L + ++ L++ + + ++D Sbjct: 120 IREEEQLHIADLQIDVLKRRVTRAGTRITLTNKEFALLHLFATHQDQVLSRSLIASRVWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++DV + +LR K+ + K I +V G GY Sbjct: 180 MNFDSDTNVVDVAVRRLRLKVDDPFQLK-LIHSVRGIGY 217 >gi|289756681|ref|ZP_06516059.1| LOW QUALITY PROTEIN: two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis T85] gi|289712245|gb|EFD76257.1| LOW QUALITY PROTEIN: two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis T85] Length = 211 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 66/182 (36%), Positives = 101/182 (55%), Gaps = 1/182 (0%) Query: 44 EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103 ++DA++LD+ L I GFEV LR ++ TPV +L+ ++ D++ GL GADDY++KPF Sbjct: 24 DYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPF 83 Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 N +EL AR+RA+ RR + GDL ++ V I L+ KE+ ++E L Sbjct: 84 NLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIR 143 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 R T+ L +D E I+DV+I LR K+ G + +ET+ G GY LR+ Sbjct: 144 RPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTS-LETIRGAGYRLRK 202 Query: 224 NA 225 + Sbjct: 203 DG 204 >gi|238854407|ref|ZP_04644749.1| regulatory protein VanR [Lactobacillus jensenii 269-3] gi|260665098|ref|ZP_05865948.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|282931811|ref|ZP_06337296.1| regulatory protein VanR [Lactobacillus jensenii 208-1] gi|313473003|ref|ZP_07813490.1| DNA-binding response regulator [Lactobacillus jensenii 1153] gi|238833029|gb|EEQ25324.1| regulatory protein VanR [Lactobacillus jensenii 269-3] gi|239528791|gb|EEQ67792.1| DNA-binding response regulator [Lactobacillus jensenii 1153] gi|260561152|gb|EEX27126.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|281304118|gb|EFA96235.1| regulatory protein VanR [Lactobacillus jensenii 208-1] Length = 228 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 124/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+I++++DDK + + + LK+E + G++ + ++ + +ILD+ + I G Sbjct: 1 MKIIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPGITG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ LR P+ ++S + DK++GL +GADDY+ KPFN E++AR+R+++RRS Sbjct: 61 IDVIKELR-KDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + S ++ G L +N D+ V+ + G+ I LT E+ ++ LL+ N + + Sbjct: 120 QKKVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGY 224 >gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 223 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 119 KKTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|89054505|ref|YP_509956.1| two component transcriptional regulator [Jannaschia sp. CCS1] gi|88864054|gb|ABD54931.1| two component transcriptional regulator, winged helix family [Jannaschia sp. CCS1] Length = 239 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILL+EDD LA + L F+V D GE + L F+A+ILDL L I G EV Sbjct: 5 ILLVEDDTRLAEMVASYLGGNGFDVSRVDTGEKALGLQGRQSFEAMILDLNLPGIDGLEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 R ++ A+ + P+ +L+ D++ GL+ GADDY+ KPF EL+AR+RA++RR + Sbjct: 65 CRHVK-AQSALPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAVMRRGQTS 123 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 HA S + G L ++ A V G LT ++Q++ +L+ L+++ ++ L Sbjct: 124 PHAGSTPLQFGRLQIDPGAMVARVDGRPCDLTTHQFQILLVLARAAGRVLSRDALMDALR 183 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IDV + ++R ++ + I TV G GYV Sbjct: 184 GEALEAFDRSIDVHVSRIRAEIEDDPKHPRRIITVRGAGYVF 225 >gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325] gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325] Length = 233 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 128/229 (55%), Gaps = 8/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ +A ++ L+ E ++V V + GE ++L + D I+LDL L + G E Sbjct: 5 KILVVDDEEPIAKILDFNLRKEGYDVIVANDGEKAVKLAFSEDPDLILLDLMLPEKDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K + P+ +L+ +S DKV GL+ GADDY++KPF+ EL+AR++ +RR Sbjct: 65 VCREVRAQK-NIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVAK 123 Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + S +V D+ + +A ++ G + LT +E+ + L+ + LT+E Sbjct: 124 QTEVVEEKNTSEVVIKDIVIYPEAYIIKKNGEEVDLTRREFDLFYYLAQHRGQVLTRENL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L ++ +V+ +DV + +LR+K+ + YI T G GY + E Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGYFIGE 232 >gi|260902480|ref|ZP_05910875.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ4037] gi|308109776|gb|EFO47316.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ4037] Length = 230 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L + V + G DG+ E+D I+LD+ L + G+ Sbjct: 1 MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 +VL LR + I TPV +L+ +ED+VRG + GA+DY+ KP+ EL+AR++ + R Sbjct: 61 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120 Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+L V DL +++ + G + LT KEY ++ELL + L++ Sbjct: 121 AAQVVASPQTLRV-ADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIA 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++D + + +IDV + +LR K+ + K I TV G GY L E+ Sbjct: 180 SLVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 227 >gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 246 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 126/235 (53%), Gaps = 9/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D+ ++ +E L ++V GE+ +E+ + D ++LD+ + + G+ Sbjct: 8 RILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVFHKQDPDLVVLDVMMPKLDGYG 67 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V + LR + P+ +L+ + + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR Sbjct: 68 VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126 Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 A +I GD+ ++ + + V + RI LTG E+ ++ELL R ++ L Sbjct: 127 SAHDGIPSSGVIQVGDIRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 186 Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++ E V +++DV I +LR KL + I T G GY+ + + E Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRIVQGE 241 >gi|15894784|ref|NP_348133.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15024453|gb|AAK79473.1|AE007661_3 Response regulator (CheY-like receiver domain and a HTH) [Clostridium acetobutylicum ATCC 824] gi|3025460|gb|AAC12853.1| PhoP [Clostridium acetobutylicum ATCC 824] Length = 217 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+IEDD A+++ I+L L + GE ++L + FD I+LD+ L I GF Sbjct: 2 INILIIEDDAAISNLIKLNLNMAGYISEAVYNGEAALDLIEGRNFDLILLDIMLPKIDGF 61 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + ++ I PV L+ +S+ DKV GL+ GADDYI+KPF+ EL+ARI ++R Sbjct: 62 SLFQKIKYKGI--PVIFLTAKTSVTDKVSGLRMGADDYITKPFDGMELLARIDNVLRHYD 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + +SL D+ V L+ ++ G I LT KE+++ L KN LT+E L+ Sbjct: 120 KNEKSLKFE-DIEVQLEEMRLKKNGQIIDLTVKEFELAAYLIKNKNIVLTRERIAEELWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + ID +I K+RKKL K+ ++T++ GY L E Sbjct: 179 YDYLGDCRTIDNYIQKIRKKLD----WKDKVKTIFKMGYRLEE 217 >gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193] gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193] Length = 224 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL++DD L + + L+ + V G++ + + D I+LD+GL ++ GF Sbjct: 1 MKILLVDDDPRLRDLVRIALERAGWQVVTAADGQEALLHASREDPDFIVLDIGLPELDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV R +R + P+ L+ D + GL+ GADDY++KPF+ ELVARIR I++RS Sbjct: 61 EVCRRIR-QRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKRSQ 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + A + + G+LS++ A ++ G I LT +E ++ LL ++ ++ ++ Sbjct: 120 KAQASTSLTHGELSLDPRAHRCQINGQEIALTAREQGILALLLQDPAQIRSRAELISQIW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + +D + LR KL AGG + IETV G LR Sbjct: 180 GAGSQVSDRTLDSHLRNLRAKLEQ-AGGNDLIETVHAVGIRLR 221 >gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 228 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+DDK + + L E F V + + G++G+ + +ILD+ L G++ Sbjct: 6 KILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHFSNNPPNIVILDIMLPGKDGWD 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119 + R +R P+ +L+ S DKV GL+ GADDY+ KPF+ +EL+AR++A++RR Sbjct: 66 ICREIRRMS-DIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRRYNQ 124 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A ++IV +L ++ + V+ Q + L KE++++ L+ N T+E L ++ Sbjct: 125 DNDANNVIVYPNLVIDKNTMLVKYQKKELELPPKEFELLYFLASHPNKVYTREQLLEQVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +DV + +LR+K+ + I TVWG GY Sbjct: 185 GFDYYGDSRTVDVHVNRLREKIG-SENDPWKISTVWGVGY 223 >gi|331271106|ref|YP_004385815.1| two component transcriptional (response) regulator [Clostridium botulinum BKT015925] gi|329127601|gb|AEB77543.1| Two component transcriptional (response) regulator [Clostridium botulinum BKT015925] Length = 230 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 68/221 (30%), Positives = 126/221 (57%), Gaps = 5/221 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D++ + +I+ L++ +FNV + + + +FD IILD+ + ++ G E Sbjct: 4 KILVIDDNEDICTTIKSYLENYDFNVKTVTSCRNALNILN-EKFDLIILDIMMPEMDGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 +R K+S P+ +S EDK++ G DDYI+KPF+ +EL ARI + +RR Sbjct: 63 FCSIIR-KKVSCPILFVSAKILEEDKLQAFAIGGDDYITKPFSLKELKARIESHLRREER 121 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ +G++ ++ A + +G ++ LT KEY M++ L L KN +KE L+++ Sbjct: 122 IKSKEVYILSSGNIILDAVAHDILCKGEKLKLTNKEYNMVKFLMLNKNIVFSKEKLLDNV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E ++ + I +RKK+ N +YI T++G+GY Sbjct: 182 WGMDSESYLETVTESIKNIRKKIKNIDKDNSYISTIYGQGY 222 >gi|302542071|ref|ZP_07294413.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus ATCC 53653] gi|302459689|gb|EFL22782.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus ATCC 53653] Length = 238 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 122/238 (51%), Gaps = 22/238 (9%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDI 57 MR+LL+EDD +A ++ +L F++ GE+ ++ F ++LDLGL D Sbjct: 1 MRLLLVEDDNHVAAALTAVLSRHGFDITHARSGEEALKALLPGAGAPFGVVLLDLGLPDQ 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 GFEV +R +TPV +++ S + ++ GL GADDY+ KP++ EL+ARI A+ R Sbjct: 61 DGFEVCGRIR-KLTATPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTMELLARIHAVSR 119 Query: 118 R-----SRGHA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163 R S G A Q + G +++ L + V V G + LT KE+ ++ LL+ Sbjct: 120 RTLPSDSGGGAGTEDSGEGPQPPLRLGPVTIELPTRQVSVDGATVSLTRKEFDLLALLAQ 179 Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R +E ++ ++ E + ++V I LR KL A IETV G GY L Sbjct: 180 RPGVVFRREQIISEVWRTSWEGTGRTLEVHIASLRSKLHMPA----LIETVRGVGYRL 233 >gi|294815494|ref|ZP_06774137.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294328093|gb|EFG09736.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 307 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 19/234 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC------KFYEFDAIILDLGL 54 MR+LL+EDD +A ++ +L F V GE+ + F I+LDLGL Sbjct: 75 MRLLLVEDDDHVAAALSAVLGRHGFQVVHARNGEEALRAVLPAAHPGRPPFGVILLDLGL 134 Query: 55 TDIPGFEVLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 D G++V LR KI STPV +++ S + ++ GL GADDY+ KP++ EL+ARI Sbjct: 135 PDQDGYQVCGKLR--KITSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIH 192 Query: 114 AIVRR------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167 A+ RR + A + G +++ L + V V G + LT KE+ ++ LL+ R Sbjct: 193 AVSRRGGPGDDAPAPAGQALRLGPMTIELSTRRVSVDGTEVQLTRKEFDLLALLAQRPGV 252 Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++ ++ E + ++V + LR KL A +ETV G GY L Sbjct: 253 VFRREQIISEVWRTSWEGTGRTLEVHVASLRAKLRMPA----LVETVRGVGYRL 302 >gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 232 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K + ++ LK E ++ GE+ + L D I+LD+ L + GF Sbjct: 4 KILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQNPDLILLDIMLPKMDGFT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR + ISTP+ +L+ DKV GL+ GADDYI+KPF+ EL+AR++A +RR Sbjct: 64 VCRKLRQS-ISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRLIP 122 Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q + GDL++++D ++ I LT +E+++++ L+ ++ T ++E Sbjct: 123 GEQPGEDTNSHINKYGDLTIDIDRYEIKRGEETIELTLREFELVKFLAAQQGTIFSRETL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ +V+ +DV + ++R+KL YI T G GY Sbjct: 183 LEKVWGYEYYGDVRTVDVTVRRVREKLELDPANPQYIVTKRGVGY 227 >gi|225026937|ref|ZP_03716129.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353] gi|224955748|gb|EEG36957.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353] Length = 248 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D++ +A +E+ LK+EN+ VY D + + + D ILD+ L D+ GF Sbjct: 21 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ DK+ GL GADDY++KPF E+VAR++A +RR + Sbjct: 81 LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139 Query: 122 HAQSLI---VTGDLSVN---LDAKTVE--VQGHRIHLTGKEYQMIE-LLSLRKNTTLTKE 172 ++ +I + +LS N L+ +T E + G + LT E+ ++ LLS N +E Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 199 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +F D I V I LR+KL++ + YI+T+WG GY Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGY 246 >gi|261408223|ref|YP_003244464.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284686|gb|ACX66657.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 129/227 (56%), Gaps = 14/227 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ +++ ++ L+ E + V G++ +E + ++ D ++LD+ + + G++ Sbjct: 3 KVLVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVMMPKLSGYD 62 Query: 62 VLRALRVAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R R+ P + +L+ I DKV GL+ GADDY++KPF+ E++AR++A+ RRSR Sbjct: 63 VCR--RLGDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSR 120 Query: 121 ----GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 Q+L I L++NL +T+ +G + LT KE+ ++ LL+ ++E Sbjct: 121 TPEAAGKQALETHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSRE 180 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++D + +D+ + +LRKKL N I+TV+G GY Sbjct: 181 ALLEQVWDMDFAGGTRTVDIHVQRLRKKLGNQ---HEVIQTVYGIGY 224 >gi|182419360|ref|ZP_02950612.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237666528|ref|ZP_04526513.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376691|gb|EDT74263.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237657727|gb|EEP55282.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium butyricum E4 str. BoNT E BL5262] Length = 226 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 11/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+K++ + I + L+ E + V ++ G D IE + + +ILD+ L DI G Sbjct: 1 MKILVVDDEKSIVNLIRMNLELEGYQVVISMNGIDAIEKFETERPELVILDIMLPDISGH 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV+R + PV +L+ S I DK+ GLQ GADDYI+KPFN EL+ RI+AI +R Sbjct: 61 EVIRKFQKIDSEIPVIMLTANSQINDKLLGLQLGADDYITKPFNSIELMLRIKAITKRIN 120 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + + + G + V D + V + G I T KE+ + L+ N T+E Sbjct: 121 KKYNGKKENNNEFKIKG-IRVLKDERKVFIDGEEIIATYKEFDTLVLMMENCNKVFTREK 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ E + +D+ I +LRKKL + ++T++G GY Sbjct: 180 LLKRVWGYEFEGNTRAVDILIQRLRKKLGVYS---ECLKTIYGVGY 222 >gi|116625937|ref|YP_828093.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229099|gb|ABJ87808.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 242 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 128/223 (57%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++EDD+ LA ++ + + G +G+E + EFD I+LD+ L + G Sbjct: 17 MRILIVEDDRKLARQLKKGVDESGHASILAFDGREGLEAAQGNEFDVIVLDVMLPKLDGI 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VLR LR +I TP+ +L+ + + +D GL +GADDY++KPF+ + L+AR+RA+ RR + Sbjct: 77 SVLRQLRQTRIGTPILLLTALDTPDDISTGLDAGADDYLTKPFSFKVLLARLRALSRRRQ 136 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q+L+ DL+++ V+ G + L+ E+ ++E+L +T+ ++ ++ Sbjct: 137 ADRQTLLRIADLALDPATHDVKRAGAMVSLSKTEFVILEILMRSSGRVITRTRLIDAVWG 196 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +DVFI +LR K+ AG + TV G GY LRE Sbjct: 197 HERDVQSNTLDVFIRQLRTKI-EPAGTTKLLHTVRGIGYTLRE 238 >gi|328471931|gb|EGF42808.1| putative two component response regulator transcription regulator protein [Vibrio parahaemolyticus 10329] Length = 230 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L + V + G DG+ E+D I+LD+ L + G+ Sbjct: 1 MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGIDGLYHATSEEYDLILLDIMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 +VL LR + I TPV +L+ +ED+VRG + GA+DY+ KP+ EL+AR++ + R Sbjct: 61 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120 Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+L V DL +++ + G + LT KEY ++ELL + L++ Sbjct: 121 AAQVVASPQTLRV-ADLELDMIKRVASRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIA 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++D + + +IDV + +LR K+ + K I TV G GY L E+ Sbjct: 180 SLVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 227 >gi|320526762|ref|ZP_08027952.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320132730|gb|EFW25270.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 226 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L +I L+ + + V + G + +D IILDL L + G Sbjct: 1 MRLLVVEDEITLCETIAKGLRLDGYEVDICYDGGTAWNMAMDESYDLIILDLNLPVMDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL +R T V ILS ++DK+ GL SGA+DY+ KPF+ EEL AR+R++ RR Sbjct: 61 EVLHNIRKEDSETAVLILSARGHLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRRT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ G+LS++ ++T +G ++ LT KE ++E L L + + +E + H++D Sbjct: 121 VQNNVILSCGELSLDTKSRTAMARGEKLPLTRKELGLLEYLLLHQERPVPQEELIQHVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I V I LRKKL AA G + I G+GYV+ Sbjct: 181 SSVDSFSNSIRVHISALRKKL-RAALGYDPIANRIGQGYVI 220 >gi|108801194|ref|YP_641391.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870326|ref|YP_940278.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126437173|ref|YP_001072864.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108771613|gb|ABG10335.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696415|gb|ABL93488.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126236973|gb|ABO00374.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 226 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++++ L + V G + + ++ D I+LDLGL D+ G E Sbjct: 3 RVLVVDDEPQILRALKINLSVRGYEVTTAATGAEALRSAADHKPDVIVLDLGLPDMSGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL----VARIRAIVR 117 VL LR +S PV +LS + DKV L +GADDY++KPF +E A +R + Sbjct: 63 VLAGLR-GWLSAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRATK 121 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S G + ++VTG +V+L AK V G +HLT E+ M+E+L + + +E L Sbjct: 122 ESDGD-EPVVVTGSFTVDLAAKRVVKNGAEVHLTPTEWGMLEMLVRHRGKLVGREELLKE 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ E + V++ +LR+KL + ++ T G GY ++ Sbjct: 181 VWGPAYAKETHYLRVYLAQLRRKLEDDPSRPRHLLTEAGMGYRFQQ 226 >gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13] Length = 231 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 133/226 (58%), Gaps = 3/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D++ + I+ LK E ++ V G + +++ + +FD I+LDL L +I G E Sbjct: 5 KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKVIREIKFDLILLDLMLPEIDGLE 64 Query: 62 VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R + ++ PV +++ DKV GL+ GADDYI+KPF+ EL+AR++A++RRS Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +++I GD+ VN + V + LT KE+++++LL K LT+E+ L+ + Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + E + +DV I LRKK+ + YI+T+ G GY N Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230 >gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 225 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 131/224 (58%), Gaps = 8/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPG 59 ++L+IED++ + ++ L++ + V V + G+ G+E D I+LD+ L DI G Sbjct: 3 KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKAGLEYFNNNNKDISIILLDIMLPDISG 62 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + +L+ +R K PV +++ DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ Sbjct: 63 WSLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRT 121 Query: 120 RGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G ++ T +S+N+ ++ V V G +I LT KE+ +++LL K +++E LN Sbjct: 122 YGASEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNE 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ +++ +D I +LR+KL + I+TVWG GY L Sbjct: 182 VWGYDFYGDLRTVDTHIKQLREKLGEK---RKLIKTVWGIGYKL 222 >gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 242 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 75 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 76 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G I+LT EY+++ L++ KN T E Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 194 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 195 ESVWKERAYESNNTVMVHITRLRNKIEENPKEPKFIQNVWGVGY 238 >gi|42523998|ref|NP_969378.1| putative 2-component transcriptional regulator [Bdellovibrio bacteriovorus HD100] gi|39576206|emb|CAE80371.1| putative 2-component transcriptional regulator [Bdellovibrio bacteriovorus HD100] Length = 202 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 112/201 (55%), Gaps = 8/201 (3%) Query: 31 DLGEDGIELCKFY---EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDK 87 DL E G + ++D +ILD+ L D G + R +R P+ +L+ +S+ +DK Sbjct: 2 DLAESGSAAESYMAQGDYDLVILDVMLPDQSGIDTARHIRRDGYEGPILMLTALSTTKDK 61 Query: 88 VRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVT-GDLSVNLDAKTVEV 143 V GL +GADDY++KP++ +EL AR+RA++RR S+G A S I+ DL ++L + Sbjct: 62 VHGLDAGADDYLTKPYSFDELHARVRALLRRKAPSQGGATSNILKYADLELDLIQRKARR 121 Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203 I LT KE+ ++E L + H++D + E +IDV+I LRKK+ + Sbjct: 122 NSQEISLTSKEFALLEYFMRNPERPLGRVSIAEHVWDIHFDSESNVIDVYINLLRKKI-D 180 Query: 204 AAGGKNYIETVWGRGYVLREN 224 K I TV G GYVL+EN Sbjct: 181 VPFPKRLIHTVVGTGYVLKEN 201 >gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 8/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DD + I L ++ E F V G +E+ + + +ILD+ L G++ Sbjct: 6 KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 65 Query: 62 VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V R +R KIS PV +LS DKV GL+ GADDY+ KPF +ELVAR++A++RR Sbjct: 66 VCREIR--KISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYE 123 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + IV +L +N T++V G + KE +++ L+ N T+E + + Sbjct: 124 HKDSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219 + + + +DV I +LR+KL + G+N+ ++TVWG GY Sbjct: 184 WGYDFYGDSRTVDVHIKRLREKLDSE--GQNWQLKTVWGVGY 223 >gi|218554547|ref|YP_002387460.1| transcriptional regulatory protein YedW [Escherichia coli IAI1] gi|218361315|emb|CAQ98899.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli IAI1] Length = 223 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + + G DG+ L ++ IILD+ L + G+ Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR AK TPV L+ S++D+VRGL SGA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SL ++G L ++ +++V I LT KE+Q++ LL+ R + + + + ++ Sbjct: 120 ALNSSLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +DV I +LR K+ + K I T+ G GY Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 216 >gi|33416267|ref|NP_878013.1| vancomycin response regulator VanR [Staphylococcus aureus] gi|121633842|ref|YP_976080.1| VanR protein [Enterococcus faecium] gi|124112009|ref|YP_001019038.1| VanR protein [Enterococcus faecium] gi|190606514|ref|YP_001974799.1| VanR protein [Enterococcus faecium] gi|197103114|ref|YP_002128396.1| VanR protein [Enterococcus faecium] gi|256965580|ref|ZP_05569751.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704] gi|257880769|ref|ZP_05660422.1| transcription regulator [Enterococcus faecium 1,230,933] gi|257883393|ref|ZP_05663046.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502] gi|257891275|ref|ZP_05670928.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410] gi|293384653|ref|ZP_06630512.1| regulatory protein VanR [Enterococcus faecalis R712] gi|293387045|ref|ZP_06631612.1| regulatory protein VanR [Enterococcus faecalis S613] gi|293567296|ref|ZP_06678649.1| vancomycin response regulator VanR [Enterococcus faecium E1071] gi|294617747|ref|ZP_06697365.1| regulatory protein VanR [Enterococcus faecium E1679] gi|305678704|ref|YP_003864123.1| VanR [Enterococcus faecalis] gi|312907837|ref|ZP_07766825.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|312979123|ref|ZP_07790833.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|313247850|ref|YP_004033012.1| two component regulator protein [Enterococcus faecalis] gi|314944050|ref|ZP_07850716.1| regulatory protein VanR [Enterococcus faecium TX0133C] gi|314949575|ref|ZP_07852901.1| regulatory protein VanR [Enterococcus faecium TX0082] gi|314995084|ref|ZP_07860203.1| regulatory protein VanR [Enterococcus faecium TX0133a01] gi|320152796|ref|YP_004172619.1| VanR [Enterococcus faecium] gi|586203|sp|Q06239|VANR_ENTFC RecName: Full=Regulatory protein vanR gi|21886739|gb|AAM77882.1|AF516335_2 cytoplasmic regulator [Enterococcus faecium] gi|148327|gb|AAA24787.1| vancomycin response regulator [Enterococcus faecium] gi|148332|gb|AAA24790.1| vanR [Enterococcus faecium] gi|155039|gb|AAA65953.1| vanR [Enterococcus faecium] gi|33390951|gb|AAQ17157.1| vancomycin response regulator VanR [Staphylococcus aureus] gi|60391955|gb|AAX19281.1| transcriptional response regulator [Paenibacillus thiaminolyticus] gi|110556107|dbj|BAE98126.1| vanR [Enterococcus faecalis] gi|121490901|emb|CAL36537.1| VanR protein [Enterococcus faecium] gi|124012111|emb|CAL90943.1| VanR protein [Enterococcus faecium] gi|186886502|gb|ACC93630.1| VanR [Enterococcus faecium] gi|190350284|emb|CAP62634.1| VanR protein [Enterococcus faecium] gi|196158936|emb|CAP70011.1| VanR protein [Enterococcus faecium] gi|227069719|gb|ACP19233.1| response regulator VanR [Enterococcus faecium] gi|256956076|gb|EEU72708.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704] gi|257814997|gb|EEV43755.1| transcription regulator [Enterococcus faecium 1,230,933] gi|257819051|gb|EEV46379.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502] gi|257827635|gb|EEV54261.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410] gi|281335163|gb|ADA62247.1| vancomycin response regulator [Enterococcus faecium] gi|283481157|emb|CAZ67068.1| VanR protein [Enterococcus faecium] gi|291078047|gb|EFE15411.1| regulatory protein VanR [Enterococcus faecalis R712] gi|291083530|gb|EFE20493.1| regulatory protein VanR [Enterococcus faecalis S613] gi|291590004|gb|EFF21799.1| vancomycin response regulator VanR [Enterococcus faecium E1071] gi|291595993|gb|EFF27268.1| regulatory protein VanR [Enterococcus faecium E1679] gi|304324955|gb|ADM24835.1| VanR [Enterococcus faecalis] gi|304324997|gb|ADM24876.1| VanR [Enterococcus faecalis] gi|304325039|gb|ADM24917.1| VanR [Enterococcus faecalis] gi|310626169|gb|EFQ09452.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|311288087|gb|EFQ66643.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|312837017|dbj|BAJ34903.1| two component regulator protein [Enterococcus faecalis] gi|313590687|gb|EFR69532.1| regulatory protein VanR [Enterococcus faecium TX0133a01] gi|313597355|gb|EFR76200.1| regulatory protein VanR [Enterococcus faecium TX0133C] gi|313644055|gb|EFS08635.1| regulatory protein VanR [Enterococcus faecium TX0082] gi|319739748|gb|ADV60066.1| VanR [Enterococcus faecium] gi|383762|prf||1904198A vanR gene Length = 231 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+ +A +EL LK+EN+ V+ ++ +E E D ILD+ L G Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+G + DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 64 ICQKIR-DKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +++IV L +N++ + ++ LT E+ ++ +L K ++ E+ Sbjct: 123 FSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELLF 182 Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ D I V I LR+K+++ YI+TVWG GY Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGY 227 >gi|326799960|ref|YP_004317779.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326550724|gb|ADZ79109.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 225 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED++ L +I L E F + ++ + Y++D I+LD+ L G Sbjct: 1 MKILIIEDEEDLLDAITSSLLKEYFLIESASDYHTAMDKIQMYDYDCILLDIMLPGGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L L+ ++ S V I+S S++DK++GL+ GADDY++KPF+ EL ARI+A++RR + Sbjct: 61 QLLEQLKQSEKSENVIIISAKDSLDDKLKGLELGADDYLTKPFHIAELNARIKAVLRRKK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 + I T ++ ++L+ + + V G + L KE+ ++ L N +TK H++ Sbjct: 121 LDGKHTIETRNVVLDLNERQLLVNGEAVALNRKEFDILNYFLLNTNRLVTKSALAEHVWG 180 Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D D+ + + I I LRKKL A IE+V+G GY + E Sbjct: 181 DNIDQADNLDFIYYQIKNLRKKLQQANAAIE-IESVYGVGYKMVE 224 >gi|307129734|ref|YP_003881750.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya dadantii 3937] gi|306527263|gb|ADM97193.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya dadantii 3937] Length = 231 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 12/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD A +E LK +NF V + G +G+++ + + D I+LD+ L + G E Sbjct: 5 RILIIEDDTDAAGVLEAYLKRDNFQVLLAGDGVNGLDMAQRLKPDLILLDVMLPGMNGTE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL ALR K PV +++ M DK+ L+ GADDY++KP++ E+VAR++A++RR+ G Sbjct: 65 VLTALR-RKSDVPVIMVTAMGDDTDKIGALRYGADDYVTKPYHPGEVVARVQAVLRRTCG 123 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEV---QGHR--IHLTGKEYQMIELLSLRKNTTLTKEM 173 +SL G L V+LDA V QG R + LT E+ ++ L + +++ Sbjct: 124 VMTPGRSLTF-GSLEVDLDAMVATVADAQGQRQLLDLTPTEFSLLATLLRAQTRAFSRQE 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L D E +++D I LRKKL A G + TV GY R+ Sbjct: 183 LLEACLPDSDALE-RVVDTHIYNLRKKL-EAVGIGGVLLTVRAVGYRFRQ 230 >gi|253989214|ref|YP_003040570.1| DNA-binding transcriptional regulator PhoP [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780664|emb|CAQ83826.1| two-component response regulator phop [Photorhabdus asymbiotica] Length = 222 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 9/223 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY----EFDAIILDLGLTD 56 MRIL++ED+ L H + + L+ ++ D + E +Y E D I+DLGL Sbjct: 1 MRILIVEDNMLLRHHLTVQLRDTG---HLVDAAANAKE-ADYYLAESEPDIAIVDLGLPG 56 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 G ++R R P+ +L+ S ++KV L +GADDY++KPF+ EE++AR++A++ Sbjct: 57 EDGLSLIRRWRQKDEKLPILVLTARESWQEKVTVLDAGADDYVTKPFHLEEIIARMQALL 116 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RR+ G +I ++L K + + G + LT EY+++E+L + +TKE + Sbjct: 117 RRNNGLVSQIIEFPPFRIDLSRKELTIYGESVKLTAFEYKIVEILMCNSDKIVTKESLMR 176 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LY + E IDV I +LRKK+ + + I TV +GY Sbjct: 177 QLYSDAELREGHSIDVLIGRLRKKIQDVWPYEA-IVTVRSQGY 218 >gi|332872003|ref|ZP_08440390.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013113] gi|332731036|gb|EGJ62339.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013113] Length = 223 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 VL+ LR +KI PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR Sbjct: 61 SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ + DL ++L V G+ I L+ E+ ++ L + K +T+ + ++ Sbjct: 119 QYLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + IDV + +LR K+ K I T+ G GY Sbjct: 179 NINFDTDTNNIDVAVRRLRSKIDEGYEPK-LIHTIRGLGY 217 >gi|295428068|ref|ZP_06820700.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128426|gb|EFG58060.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|323439506|gb|EGA97227.1| respiratory response protein, SrrA [Staphylococcus aureus O11] gi|323441526|gb|EGA99177.1| respiratory response protein, SrrA [Staphylococcus aureus O46] Length = 222 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 10/222 (4%) Query: 18 LMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCI 77 + L+ E+F ++ G++ EL + I+LDL L ++ G +V LR K TP+ + Sbjct: 1 MYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVATKLREHK-QTPIIM 59 Query: 78 LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVT 129 L+ ++V G +SGADDYI KPF+ E+V R++A++RR S HA+ +I Sbjct: 60 LTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTTVEQSEPHARDVIEF 119 Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189 L ++ DA V ++LT KEY+++ L+ N +E L ++ +++ Sbjct: 120 KHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLLKEVWHYEFYGDLRT 179 Query: 190 IDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230 +D + +LR+KL+ + + I+TVWG GY + DE Sbjct: 180 VDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 221 >gi|317050079|ref|YP_004117727.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316951696|gb|ADU71171.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 232 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 10/228 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL++DD+ L ++ +L+ E F V V GE + L D ++LD+ + G + Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFEVMVASDGEQALNLLD-NTVDLLLLDVMMPKKNGID 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR + TPV +L+ S D+V GL+ GADDY+ KPFN ELVARIRAI+RRS Sbjct: 62 TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120 Query: 122 HAQ-------SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q S + D L +N + + LTG E+ ++ LL+ +++E Sbjct: 121 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDNETLDLTGTEFTLLYLLAQHLGQVVSREH 180 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + R P + ID+ I LR+KL G + +T+ GRGY++ Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGHPWFKTLRGRGYLM 228 >gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 119 KKTENAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221 >gi|310778086|ref|YP_003966419.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747409|gb|ADO82071.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 233 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++LL++DD A+ I+ LK EN + GE+ L + FD +ILD+ L D GF+ Sbjct: 5 KVLLVDDDAAICKVIKRALKLENIEIIYASNGEEAYSLVRTQIFDLVILDVSLGDTDGFQ 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 VL+ +R P+ LSG DK+ L GADDYI+KPF+ LVA+I+A +RR Sbjct: 65 VLKKIRTEGNDVPIIFLSGNQHENDKILALGMGADDYITKPFSIFLLVAKIKAHLRRGDK 124 Query: 120 -RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + H SL I+ G +N + + + L+ KE +++ N +K+ Sbjct: 125 IKEHQTSLKKIIQGPFILNTETFQLFKNEKEVFLSSKEIMLMKFFMENPNIVFSKDQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ + I+ V++ LRKKL + + +TVWG GY Sbjct: 185 KVWNNSIVDDNTIM-VYMRHLRKKLEDDPKNPKFFQTVWGIGY 226 >gi|238923307|ref|YP_002936822.1| response regulator [Eubacterium rectale ATCC 33656] gi|238874981|gb|ACR74688.1| response regulator [Eubacterium rectale ATCC 33656] Length = 218 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL++ED+K ++ I L L ++ G + ++ + FD IILD+ L + GF Sbjct: 3 IEILIVEDEKPISDLIRLNLMKAGYSCTCAFDGMEAADILEERNFDLIILDVMLPKLNGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E++ ++ + PV L+ ++++D++RGL SGA+DY+ KPF EL+AR+ ++RR Sbjct: 63 ELMEYIK--PLGIPVIFLTAKATLDDRLRGLTSGAEDYMVKPFEIVELLARVNIVLRRYN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 Q L D++++ + V G I LT KE++++ELL KN TL +E ++ Sbjct: 121 KMEQQLTFK-DIAIDTKNQNVSKAGKHIELTPKEFELLELLMRNKNITLFREKIYEEIWG 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + +D+ I +LRKKL + ++TV+ GY L E Sbjct: 180 SEYSVESRTLDLHIQRLRKKLDIG----DSLKTVFKAGYRLEE 218 >gi|90580521|ref|ZP_01236327.1| DNA-binding response regulator [Vibrio angustum S14] gi|90438430|gb|EAS63615.1| DNA-binding response regulator [Vibrio angustum S14] Length = 235 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ + ++++ ++V + ++G++ + ++LDLGL D G E Sbjct: 6 KILVIEDEAPIRRFLDILTTGHGYSVKTVETAQEGLKQIVTWNPHLVLLDLGLPDADGLE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR TP+ ++S DKV+ L +GA+DY++KPF EEL+ARIR + R Sbjct: 66 FTKELRTW-TETPIIVISARDKEADKVQALDAGANDYLTKPFGSEELLARIR-VALRLHS 123 Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 H+ + V+ GD+ +++ +TV G I LT KEY+++ LL+ LT + L Sbjct: 124 HSTATEVSQYRFGDVLLDMAMQTVMFNGESIKLTPKEYKILTLLAKNMGKVLTHKQILKE 183 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ G + + I +LR K+ + YI T G GY L Sbjct: 184 VWGGNYTEHAHYVRIHIAQLRHKIEKSPAQPQYIITENGVGYRL 227 >gi|72382276|ref|YP_291631.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72002126|gb|AAZ57928.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 245 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 13/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA------IILDLGLT 55 R+L++EDDK++ ++ L +E + V G++ E F +FD I+LDL L Sbjct: 14 RLLIVEDDKSIRETLNEALVAEGYQVEACKTGDEA-EARVFSQFDTRKKIDLIVLDLMLP 72 Query: 56 DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 ++ G E+ R +R I TP+ I+S S D+V GL+ GADDY+ KPF EL+AR RAI Sbjct: 73 NLNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAI 132 Query: 116 VRRSRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 +RRS + + ++ ++S+ V I+L KEY+++EL Sbjct: 133 LRRSETNHEKAQDSSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPKRVW 192 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ L ++ + K +DV I +R+K+ + A +YI TV G GY Sbjct: 193 SRDQLLEQIWGIDYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGY 242 >gi|319794193|ref|YP_004155833.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315596656|gb|ADU37722.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 234 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 MRILL+ED+ +A ++++ + +V D D F E+DAI+LDL L D Sbjct: 1 MRILLVEDELDMA---SWLIRALTQSGFVADHAPDARTAEAFMAGTEYDAIVLDLRLPDK 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G VL +R A TPV IL+ +++D+VRGL GADD+++KPF EL AR+ A+VR Sbjct: 58 HGLSVLADMRDADDRTPVLILTAQGALQDRVRGLNLGADDFLTKPFELVELEARLAALVR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 RSRG + LS + ++ ++G + LT +E + L +R + K Sbjct: 118 RSRGKQHPRLQCASLSYDSESHAFTLRGTLLSLTPREQAALTALLMRSGAPVGKSQLFAK 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ I+V + +LR+KL+++ I TV G GY+L Sbjct: 178 VFTNDSTAGPDAIEVVLHRLRRKLADS---DVRIVTVRGLGYML 218 >gi|303240217|ref|ZP_07326737.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592308|gb|EFL62036.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 230 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED+ +A +EL L E ++V + + G G + EFD +ILDL L I G E Sbjct: 4 RILIIEDELKIARFLELELVHEGYDVVLENDGRSGCDKALAEEFDLLILDLMLPCISGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R + P+ IL+ + DKV GL +GA+DY++KPF EEL+AR+R I++R Sbjct: 64 VCRRIR-RQSQVPIIILTAKDDVSDKVMGLDTGANDYMTKPFAIEELLARMRGILKRYGT 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + + +++ G L+++ D V I LT KE+Q++ L + +T+E L + Sbjct: 123 INVPNDSNVLSAGKLTLDPDKFKVTYDNEDIPLTKKEFQLLMYLMNNEGLLITREKILEN 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + DV+I LR K+ + G K I T+ G GY Sbjct: 183 IWGIDYMGLTNVTDVYIRYLRTKIDDKYGVK-LIHTIRGMGY 223 >gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 234 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 15/228 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTD 56 +IL+IED++++++ +E L E +NV+ DG+ K +E D ++LD + Sbjct: 16 QILIIEDEESISNLLETELSFEGYNVFS---AADGMSGLKIFEEKQEYLDVVLLDWMIPK 72 Query: 57 IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116 + G EVLR ++ PV ++ + DKV GL +GADDY++KPFN EEL+AR+R I Sbjct: 73 LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIF 132 Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 R++ A + G +S+N TVE Q LT +E+ ++ L + ++++ L Sbjct: 133 RKNTQPA--IYSYGTVSLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILE 190 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ ++ +D ++ LRKKL KN IET+ G GY L ++ Sbjct: 191 EVWGMNFGGQLNTVDTYVRYLRKKLD-----KNMIETIRGLGYRLNKD 233 >gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 277 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE+ +EL D ++LD+ L + GF V Sbjct: 34 LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRESPDLVVLDVMLPKLDGFAV 93 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR RG Sbjct: 94 CRRLR-AESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 152 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 A Q ++ G+L V+ + + V RI LT E+ ++ELL + + Sbjct: 153 SASAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPR 212 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 213 AEILEQLWGYPPRRSADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 262 >gi|241664806|ref|YP_002983166.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12D] gi|240866833|gb|ACS64494.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 236 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 124/237 (52%), Gaps = 15/237 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+A+A I L V+V G E D +ILDLGL I G Sbjct: 1 MRILLIEDDRAIASGIHAGLTQAGHRVHVVHDGVFATEQLTRQTHDLVILDLGLPGIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +L R TPV IL+ + DKV GL +GADDY+ KPF ELVAR+ A++RR Sbjct: 61 TLLSQFRARDRVTPVLILTARDGLLDKVNGLNAGADDYLLKPFEMLELVARVGALLRRRN 120 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + A+ I+ G L ++ + + V + L+ +E+ ++ELL LR+ ++K Sbjct: 121 DSTEPAARPDILVGRLRMSGVERRIFVDAAPLELSPREFAVLELLMLRQGRVVSKVQLQE 180 Query: 177 HLYD-----GRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 HL G +V I+V++ ++R+K+ ++ + I TV G GY+L+ A Sbjct: 181 HLASFGHAIGEASHDVVGDTAIEVYVHRVRRKIEHS---EAEIVTVRGFGYLLQARA 234 >gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1] gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia coli UTI89] gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli APEC O1] gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034] gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146] gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252] Length = 260 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + + G DG+ L ++ IILD+ L + G+ Sbjct: 38 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR AK TPV L+ S++D+VRGL SGA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 98 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SL ++G L ++ +++V I LT KE+Q++ LL+ R + + + + ++ Sbjct: 157 ALNSSLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +DV I +LR K+ + K I T+ G GY Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LISTIRGMGY 253 >gi|86360536|ref|YP_472424.1| two-component response regulator [Rhizobium etli CFN 42] gi|86284638|gb|ABC93697.1| two-component response regulator protein (probably regulates osmosensitive potassium channel) [Rhizobium etli CFN 42] Length = 230 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+++D+ + + + L ++ + V E + D ++LDLGL D PG Sbjct: 6 VKILVVDDEPPIRKLLRVGLTAQGYEVREAPNAESARQSVADDMPDLVVLDLGLPDTPGH 65 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 ++L+ R +S PV ILS + V+ L+SGADDY++KPF EL ARIR +R Sbjct: 66 DLLQEWRDGGLSVPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRL 125 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + +++ TG LS++L + V+V G + L+ KEY ++ +L LT + L + Sbjct: 126 QQQGERAIFQTGGLSIDLVKRIVKVDGEELKLSPKEYDILRVLVQHAGKVLTHQFLLKQV 185 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + +V+ + V+I ++R+K+ +YI T G GY LRE Sbjct: 186 WG--PAADVQYLRVYIRQIRQKVEKIPDQPHYITTETGVGYRLRE 228 >gi|50119831|ref|YP_048998.1| two-component system response regulator [Pectobacterium atrosepticum SCRI1043] gi|49610357|emb|CAG73801.1| two-component system response regulator [Pectobacterium atrosepticum SCRI1043] Length = 226 Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M ILL++DD L + L +E F+ G++G+ ++ A+ILD+ L D+ G Sbjct: 1 MNILLVDDDVELGDMLCEYLNAEGFSTSRVLTGKEGVNGAISGDYTAMILDVMLPDMSGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +VLR +R + P+ +L+ D+V GL+ GADDY+ KP ELVAR+RA++RR Sbjct: 61 DVLRQIRKTQ-QLPIIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +S+ +GDL +N + E +G LT E+ ++ELL ++K+ Sbjct: 120 DQPSTKRDESVAASGDLVLNPATRISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELS 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 R E + +DV I +R+KL AG IETV GY +R Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLGALAGNMMTIETVRSVGYRIR 226 >gi|256389697|ref|YP_003111261.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355923|gb|ACU69420.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 223 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+++DD A+ S+E L+ + ++V G + + DA++LD+ + + G Sbjct: 1 MRILVVDDDPAVRRSLEHALRRDGYDVVSVADGTSALAEHVAFRPDAVVLDILMPEPNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV RALR A TP+ +L+ + D+V GL +GADDY++KPF EEL AR+RA++RRS Sbjct: 61 EVCRALRSAGDDTPILMLTARDLVTDRVAGLDAGADDYLAKPFALEELRARLRALLRRS- 119 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 AQS ++T D+ ++L VE G R+ LT E ++EL L++ ++ Sbjct: 120 -GAQSEVLTFADVRLDLSGWRVERGGRRLELTKTELSLLELFLRNPQHVLSRTQIFESVW 178 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 P+ + V+I LR KL A GG I+TV G GYVLRE Sbjct: 179 GYDFGPQSNALWVYISYLRGKL-EADGGARLIQTVRGLGYVLRE 221 >gi|218676350|ref|YP_002395169.1| putative two-component response regulator [Vibrio splendidus LGP32] gi|218324618|emb|CAV26167.1| putative two-component response regulator [Vibrio splendidus LGP32] Length = 243 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 9/232 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+EDD LA +++ LK + NV + E +L +FD ++LD GL D G + Sbjct: 12 MLLVEDDDDLAELVQMHLKFQGHNVERANTIEKAQDLYLDGQFDLVVLDRGLPDGDGLDF 71 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R +R + TPV +L+ + DKV GL++G DDYI+KPF+ E AR+R ++RR Sbjct: 72 CRMIRQKEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLSHV 131 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +S++ G L + + V + + LT E+ ++ L+ R +K+ Sbjct: 132 ESVTQEAMTTESIMNFGGLIIQPERHQVSLNNQDVPLTATEFTLLHFLATRPGRVYSKDE 191 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L+H+++ + + +LR KL+ ++I+TVWG GY A Sbjct: 192 LLDHVWNTHHSGYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFESKA 243 >gi|332142206|ref|YP_004427944.1| transcriptional regulatory protein CpxR [Alteromonas macleodii str. 'Deep ecotype'] gi|327552228|gb|AEA98946.1| transcriptional regulatory protein CpxR [Alteromonas macleodii str. 'Deep ecotype'] Length = 236 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 124/213 (58%), Gaps = 6/213 (2%) Query: 20 LKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78 L+ + F+V+ GE+ + L ++D ++LD+ + + G +VLRA+R K TP+ +L Sbjct: 25 LEGDGFSVHAIHSGEEAVNTLLNSNQYDTVVLDIMMPGMSGLDVLRAVRAEK-QTPILML 83 Query: 79 SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-HAQSLIVT--GDLSVN 135 +G D++ GL+ GADDY+ KP N EL ARIRAI+RR++ A + ++T +S++ Sbjct: 84 TGRGDDIDRIVGLEMGADDYLPKPCNPRELGARIRAIIRRTQQLKAPATVITELHGISLD 143 Query: 136 LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFIC 195 + A+T V+G I LTG E+ + LL R T++K+ + E + +DV I Sbjct: 144 IGARTASVKGRPITLTGAEFNALCLLMERAGQTISKQEMTQEVLSRPLEAYDRAMDVHIS 203 Query: 196 KLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 ++R+KLS A G + I+++ GY + + + + Sbjct: 204 RIRQKLS-AVGVNSVIKSIRKVGYQMLTSPQSQ 235 >gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755] gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755] Length = 241 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+IL+ +DDK + + + L +E + +V D E ++ + + +ILD+ + ++ G Sbjct: 13 MKILVADDDKEIVELLSIYLHNEGYESVKAYDGKEALTKIRTTSDIELLILDIMMPEMDG 72 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ LR + P+ +L+ ++ DK+RGL +GADDY++KPFN E++AR+++++RR+ Sbjct: 73 MQVVKELR-KESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRT 131 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A S ++ L +N D+ V+ V G+ I LT E+ ++ LL+ N + + Sbjct: 132 KMQAASNQPEILEVSSLIINRDSHEVKTVDGNEIQLTALEFGILYLLASHPNRVFSADEI 191 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 192 FERVWKQESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGY 236 >gi|229513612|ref|ZP_04403076.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae TMA 21] gi|229349489|gb|EEO14445.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae TMA 21] Length = 228 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD L + +L+ E F + + GE G+ E D I+LD+ + + G E Sbjct: 4 ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVS-DEIDLILLDVMMPKLNGMET 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 L+ LR K +TPV +L+ D+V GL+ GADDY+ KPF+ EL+ARIRAI+RR++ Sbjct: 63 LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQSG 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I D+ V + QG + LT E+ ++ TLTKEM + Sbjct: 122 LTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ID+ + LRKKL GK I+T+ GRGY++ Sbjct: 182 LGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYLM 224 >gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 232 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 130/223 (58%), Gaps = 6/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + I+ L++ +N G + + + K + D I+LDL L + G+E Sbjct: 5 KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + +R +TP+ +++ DKV GL+ GADDYI+KPF+ E++AR++A++RR Sbjct: 65 VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVLRRR 124 Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++S I+ G++ V+ + ++ G +I LT KE++++E+L K +T++ L+ Sbjct: 125 TTINIESKSYIL-GNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + +DV I LRKK+ + +IET+ G GY Sbjct: 184 RIWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGY 226 >gi|325963065|ref|YP_004240971.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323469152|gb|ADX72837.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 246 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R L+++D+ +L+ + + L+ ++V V G + ++L K + D ++LD+ L G Sbjct: 22 IRALVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKLAKDFRPDVLVLDVMLPGFDGV 81 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L +R P L+ +I+D++ GL +G DDY++KPF+ EE++ R+ +V+RS Sbjct: 82 ELLGRIRAFAPEVPALFLTAKDAIQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141 Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A +V GDL +N+D + V G + LT +++++ L ++K L+ + Sbjct: 142 VAAMDTAELVVGDLVLNVDTREVTRAGQDVQLTATQFELLRYLMENPKRVISKAQILDRV 201 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + I++++I LRKK+ A I TV G GYV++ Sbjct: 202 WNYDFGGQANIVELYISYLRKKID--AVHPPMIHTVRGAGYVIKP 244 >gi|296395434|ref|YP_003660318.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296182581|gb|ADG99487.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 238 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 115/215 (53%), Gaps = 8/215 (3%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S++ L+ F+V D G + DA+ILD+ + + G V+ ALR P Sbjct: 22 SLQRGLRLSGFSVVTADNGAAALSAVHQQHPDALILDMNMPGLDGVSVVTALRAMGDDIP 81 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS-------LI 127 +C+LS SS+ D++ GL++GADDY++KPF EL+AR++A++RR +++ +I Sbjct: 82 ICVLSARSSVGDRIEGLEAGADDYLTKPFVLGELIARVKALLRRPSTTSRAAPTVEYGVI 141 Query: 128 VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV 187 L V++ + V V I LT +E++++ L+ L++ L ++ + Sbjct: 142 HVDYLGVDIPGRRVTVDDESIELTKREFELLAALAENTGVVLSRTELLERVWGYDFAADT 201 Query: 188 KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++DVF+ LRKKL G I TV G G+VLR Sbjct: 202 NVVDVFVGYLRKKL-ELKGRHRLIHTVRGYGFVLR 235 >gi|34540512|ref|NP_904991.1| DNA-binding response regulator [Porphyromonas gingivalis W83] gi|34396825|gb|AAQ65890.1| DNA-binding response regulator [Porphyromonas gingivalis W83] Length = 229 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 3/229 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ L +I+ L E + V +G++ Y++D I+LD+ L D G Sbjct: 1 MKILIIEDEPDLRETIQKFLLGERYIVETAATMNEGLDKVLVYDYDCILLDIMLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ L+ + + I+S +IEDKV+G++ GADDY++KPF+ EL RI+ ++RR Sbjct: 61 TLLKELKKRGKTENLIIISAKDAIEDKVQGIELGADDYLTKPFHLLELNVRIKGLIRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 H I G++S+ D V V+GH + L KEY ++ L R N + K ++ Sbjct: 121 AHGAMEIKLGNVSLVPDRFEVAVKGHPLELKRKEYDILYHLMTRPNRLVDKAALAEAVWG 180 Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D D+ + + I LRK++ N AG I++V+G GY L E +D Sbjct: 181 DYIDQADNYDFVYAQIKNLRKQM-NDAGATIEIKSVYGFGYKLIEREED 228 >gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family [Chlorobium phaeovibrioides DSM 265] Length = 236 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 8/230 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++EDD+ LA + L+ + ++ GED + FD ++LD+ L I GFEV Sbjct: 6 LLVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSRRSFDLVLLDVMLPGIDGFEV 65 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R +R +I P+ +L+ DK+ G + G DDY+ KPF+ EL RIRA+++R R Sbjct: 66 CRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKRDR 125 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + + G L V++ +V + G + LT E++++ L RK ++EM L+ Sbjct: 126 RQGGVFREALKAGGLEVDIARHSVTLDGQELVLTLMEFKLLVALLKRKGQAQSREMLLSD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 ++D + ID I +LR+KL + I+TV G GY E D Sbjct: 186 VWDVDRSINTRTIDTHITRLREKLGESG---RQIKTVRGLGYKFDEEGDD 232 >gi|15642687|ref|NP_232320.1| transcriptional regulator CpxR [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121726722|ref|ZP_01679947.1| transcriptional regulator CpxR [Vibrio cholerae V52] gi|147675245|ref|YP_001218180.1| transcriptional regulator CpxR [Vibrio cholerae O395] gi|227082808|ref|YP_002811359.1| transcriptional regulator CpxR [Vibrio cholerae M66-2] gi|229507260|ref|ZP_04396765.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae BX 330286] gi|229509818|ref|ZP_04399299.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae B33] gi|229516940|ref|ZP_04406386.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae RC9] gi|229527383|ref|ZP_04416775.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae 12129(1)] gi|229606767|ref|YP_002877415.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae MJ-1236] gi|254851228|ref|ZP_05240578.1| transcriptional regulator CpxR [Vibrio cholerae MO10] gi|255744348|ref|ZP_05418300.1| copper-sensing two-component system response regulator CpxR [Vibrio cholera CIRS 101] gi|262158542|ref|ZP_06029657.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae INDRE 91/1] gi|262170064|ref|ZP_06037753.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae RC27] gi|298500492|ref|ZP_07010296.1| transcriptional regulator CpxR [Vibrio cholerae MAK 757] gi|9657287|gb|AAF95833.1| transcriptional regulator CpxR [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630883|gb|EAX63265.1| transcriptional regulator CpxR [Vibrio cholerae V52] gi|146317128|gb|ABQ21667.1| transcriptional regulator CpxR [Vibrio cholerae O395] gi|227010696|gb|ACP06908.1| transcriptional regulator CpxR [Vibrio cholerae M66-2] gi|227014580|gb|ACP10790.1| transcriptional regulator CpxR [Vibrio cholerae O395] gi|229335015|gb|EEO00500.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae 12129(1)] gi|229346003|gb|EEO10975.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae RC9] gi|229353292|gb|EEO18231.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae B33] gi|229354765|gb|EEO19686.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae BX 330286] gi|229369422|gb|ACQ59845.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae MJ-1236] gi|254846933|gb|EET25347.1| transcriptional regulator CpxR [Vibrio cholerae MO10] gi|255737873|gb|EET93266.1| copper-sensing two-component system response regulator CpxR [Vibrio cholera CIRS 101] gi|262021472|gb|EEY40184.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae RC27] gi|262029703|gb|EEY48352.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae INDRE 91/1] gi|297540661|gb|EFH76718.1| transcriptional regulator CpxR [Vibrio cholerae MAK 757] gi|327485164|gb|AEA79571.1| Copper-sensing two-component system response regulator CpxR [Vibrio cholerae LMA3894-4] Length = 228 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD L + +L+ E F + + GE G+ E D I+LD+ + + G E Sbjct: 4 ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVS-DEIDLILLDVMMPKLNGMET 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 L+ LR K +TPV +L+ D+V GL+ GADDY+ KPF+ EL+ARIRAI+RR++ Sbjct: 63 LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNG 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I D+ V + QG + LT E+ ++ TLTKEM + Sbjct: 122 LTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ID+ + LRKKL GK I+T+ GRGY++ Sbjct: 182 LGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYLM 224 >gi|169630331|ref|YP_001703980.1| transcriptional regulatory protein KdpE [Mycobacterium abscessus ATCC 19977] gi|169242298|emb|CAM63326.1| Probable transcriptional regulatory protein KdpE [Mycobacterium abscessus] Length = 224 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D+ + ++ + L + + V G + + + +ILDLGL D+ G E Sbjct: 3 RVLVVDDEPQILRAMRINLSARGYEVVTASSGAGALRAAAETQPEVVILDLGLPDMDGTE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 VL LR PV +LS + DKV L +GADDY++KPF +E +AR+RA VRR + Sbjct: 63 VLAGLR-GWTDVPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRRGTP 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ ++ T V+L + V G +HLT E+ M+ +L + + ++ L+ ++ Sbjct: 122 DSAEPVVHTETFDVDLSSHKVIRDGREVHLTPTEWSMLAVLVRNRGKLVGQKELLHEVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E + V++ +LR+KL ++ T G GY +E Sbjct: 182 PAYSSETHYLRVYLAQLRRKLEIDPAHPKHLLTEAGMGYRFQE 224 >gi|154246206|ref|YP_001417164.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154160291|gb|ABS67507.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 221 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 MRIL++EDD++LA ++ L S + V + D+ D + L ++ ++LDLGL + G Sbjct: 1 MRILIVEDDRSLASGLKRSLTSLGYAVDHEADVA-DAVGLATREAYNLVVLDLGLPNGSG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++VLRA+R + TPV IL+ + +KV+ L GADDY+ KPF E AR+RA+VRR Sbjct: 60 YDVLRAIRRNGLKTPVMILTARDHVSEKVKALDLGADDYVHKPFALAEFEARVRALVRRG 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G + ++ G L + + ++G + L +E ++ LL L+ + K ++ ++ Sbjct: 120 FGVSDVVLEFGPLQFDTAQQVARLEGSPLDLRRRELAVLHLLLLQAGKLVPKARLISEVF 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D ++++I +LRKKL AGG I TV G GY+L Sbjct: 180 GLDDAVGPNALELYIARLRKKL--GAGGLR-IRTVRGLGYML 218 >gi|168704577|ref|ZP_02736854.1| two component transcriptional regulator, winged helix family protein [Gemmata obscuriglobus UQM 2246] Length = 228 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 2/200 (1%) Query: 20 LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79 L+ E F V ++D ++LD GL G +L+ LR A TPV +L+ Sbjct: 22 LREEGFTVESAADARAAWHALATADWDVVLLDRGLPGEDGLSLLKRLRAAGRFTPVLMLT 81 Query: 80 GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAK 139 ++ D+V GL +GADDY++KPF +EL+AR+RA+ RR + + D+ V+L + Sbjct: 82 ARDAVPDRVAGLDAGADDYLTKPFAFDELLARVRALARRPAAVTGTTLSHADVRVDLATQ 141 Query: 140 TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRK 199 E GH++ LT KEY ++ L LT+ H++D R + ++V + LR+ Sbjct: 142 RAERAGHKLDLTAKEYALLVLFLRHPGQVLTRTRIYEHVWDERYDGTSNTLEVHVKDLRR 201 Query: 200 KLSNAAGGKNYIETVWGRGY 219 KL G I T+ RGY Sbjct: 202 KLEGH--GPRLIHTLRNRGY 219 >gi|167565338|ref|ZP_02358254.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] gi|167572443|ref|ZP_02365317.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 220 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +E LK E F V G+ + + ++LDLGL D G Sbjct: 1 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTPYALLLLDLGLPDKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR + PV +++ ++ D++ GL GADDY+ KPF EEL+ARIRA+ RR Sbjct: 61 AVLAALRRRDDALPVIVITARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+++ G L ++ V + L+ KE+ ++ L +++E F LY Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E + V I LRKKL G + I TV G GY + + A Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 220 >gi|309775541|ref|ZP_07670541.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium 3_1_53] gi|308916635|gb|EFP62375.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium 3_1_53] Length = 226 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 3/222 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILLIED+ + I LK +F++ G+ +EL +FD +I+D L + G + Sbjct: 3 RILLIEDEDNIRKIIAYDLKKADFDIVECADGKTAVELAMKEDFDVLIIDWMLPHVSGID 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 +++ LR I +L+ D + + G DDYI+KPF+ EL+AR+ A ++R Sbjct: 63 IVKKLRNEHIDAIFIMLTARDDETDILYAFEQGVDDYITKPFSPRELLARVNAHLKRQSR 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + GDLS+++ + + H + LT KE+ ++E K+ L+++ LN ++ Sbjct: 123 KQEKRLAVGDLSMDMKRREAYIGDHMMTLTKKEFDLLEYFIQNKDIVLSRDSILNDIWGF 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + +I+DV + KLR KL+ + +I++ G GY+L E Sbjct: 183 DYDGDTRIVDVHVFKLRNKLN---ASRVHIKSSRGVGYLLEE 221 >gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ A + +L+ E F V G+ +E D ++LDL L + G + Sbjct: 3 RVLIVEDEESFADPLAFLLRKEGFTAAVAGTGQAALEEFDRNGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR + + PV +++ S DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCKQLR-QRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121 Query: 119 --SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S G L+++ G + ++++ V V G + L KE+ ++E L LT+ + Sbjct: 122 PGSEGELAPLVLSAGPVRMDVERHVVTVDGADVSLPLKEFDLLEYLLRNVGRVLTRGQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGY 225 >gi|317132867|ref|YP_004092181.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470846|gb|ADU27450.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 229 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/224 (34%), Positives = 112/224 (50%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD A+A L E F V ++ G G+E FD I+LDL L I GF Sbjct: 3 KILIIEDDTAIAAIERDYLLVEQFEVVISQDGRSGMEKALQGSFDLILLDLMLPGIDGFT 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115 V R LR + P+ +++ DK+RGL GADDYI KPF+ LVAR++A Sbjct: 63 VCRRLR-ESLDIPILMVTARREDIDKIRGLGLGADDYIEKPFSPSVLVARVKANLAQYAR 121 Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 +R++ A I G + +N D V V I L KEY+++ ++ + L +E Sbjct: 122 LRKTDRTAPIQIAIGSIRINTDTHRVYVNDTEIELKNKEYELLLFMAQNADVVLNRETLY 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I +LR K+ G YI+TV G GY Sbjct: 182 ERIWGMDAMGDNATVAVHINRLRDKIEEDPGNPRYIQTVRGAGY 225 >gi|254442742|ref|ZP_05056218.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198257050|gb|EDY81358.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 224 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 112/218 (51%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL++EDD+ALA + E + V G+ G+EL D ++LD+ L + G+ Sbjct: 3 KILIVEDDEALARGLRDNFACEGYEVAYAADGDTGLELLLDGGADIVLLDVMLPGLDGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + A R S P+ +L+ D VRGL+ GADDY+ KPF+ EL+AR+RA +RR R Sbjct: 63 ICEAARREGCSMPILMLTAKGQERDIVRGLELGADDYVVKPFSVRELIARVRAFLRRHRS 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + GD ++ D+ + +G + LT KEYQ++E L + LT++ + ++ Sbjct: 123 EDERCFSFGDFHLDRDSVRLTREGKEVKLTRKEYQLLEYLLIHSGKALTRQGIMASVWGS 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +D + LR K+ ++ T+ GY Sbjct: 183 SVMVTQRSVDRCVTTLRGKIEKEPSRPRHLLTIRDVGY 220 >gi|169349478|ref|ZP_02866416.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552] gi|169293553|gb|EDS75686.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552] Length = 227 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 6/227 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RI +IEDD+ + I L L S + V D D +EL K I DL L + G + Sbjct: 4 RIFVIEDDENIREIINLALVSNGYEVVQFDNAIDALELMKKETPSLAIFDLMLPKMSGID 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++ +R P+ ILS DKV GL SG+DDY++KPF EL AR+R+++RR Sbjct: 64 AIKKIRETNNELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRR--- 120 Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H S +I T L V+ + +++ G ++ LT KEYQ++ L K+ + +E LN ++ Sbjct: 121 HVTSDVIKTKHLVVDKQTRMIKMDGKKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 E + +DV I LR KL++ G YI+T+ GY E D Sbjct: 181 YDFIGESRALDVHIRALRSKLND--DGHKYIKTIRSVGYRFYEEGDD 225 >gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 224 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 131/223 (58%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 ++L+IED++ + ++ L++ + V V + G+ G+E + I+LD+ L DI G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R K PV +++ DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ Sbjct: 63 SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTY 121 Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++ T +S+N+ ++ V V G +I LT KE+ +++LL K +++E LN + Sbjct: 122 GASEEEGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++ +D I +LR+KL + I+TVWG GY L Sbjct: 182 WGYDFYGDLRTVDTHIKQLREKLGEK---RKLIKTVWGIGYKL 221 >gi|23336525|ref|ZP_00121738.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|23465569|ref|NP_696172.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189439616|ref|YP_001954697.1| putative response regulator [Bifidobacterium longum DJO10A] gi|227546166|ref|ZP_03976215.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621792|ref|ZP_04664823.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296453867|ref|YP_003661010.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|312133015|ref|YP_004000354.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317481881|ref|ZP_07940908.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322688823|ref|YP_004208557.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322690811|ref|YP_004220381.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|23326235|gb|AAN24808.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189428051|gb|ACD98199.1| Putative response regulator [Bifidobacterium longum DJO10A] gi|227213147|gb|EEI81019.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514983|gb|EEQ54850.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517115|emb|CBK70731.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|296183298|gb|ADH00180.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] gi|311774002|gb|ADQ03490.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916672|gb|EFV38067.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320455667|dbj|BAJ66289.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320460159|dbj|BAJ70779.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 240 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 14/227 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ LA +I + +E + V G ++ D +I+D+ L + G E Sbjct: 15 VLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPVMDGLEA 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + + VA+ PV IL+ DKV GL +GADDY++KPF+ EL+AR +A++RR Sbjct: 75 TKRI-VAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L+ G + ++ + V V G ++HLT E+ ++ L+ R + LT+E Sbjct: 134 KVIAKNSENEKLLDFGSMVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++D D + +D + LR KL G + I TV G GY Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GADTIRTVHGVGYAF 235 >gi|325528614|gb|EGD05708.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 241 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 131/238 (55%), Gaps = 16/238 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LLIEDD LA + L S F V V G+ + + + +ILDL L ++ G E Sbjct: 9 RVLLIEDDDRLAQLVREYLDSYEFAVTVVRRGDLAVAAVREHRPALVILDLMLPNLDGME 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R A PV IL+ + + D++ GL++GADDY++KP LVAR RA++RR Sbjct: 69 VCRRIR-AFTHVPVLILTARADVYDQIAGLETGADDYVTKPIEPRVLVARARALLRRAQP 127 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R A +V G+L+++ +TV +G + L E+ ++ +L+ T L+++ Sbjct: 128 AETGPRPAAPEALVFGELTISPPNRTVTWRGQPVDLKTAEFNLLLILARAAGTVLSRDDI 187 Query: 175 LNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L L +DG D + +D I KLR++ +A+ + I+T+WGRGY+ +A DE Sbjct: 188 LKQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDE 241 >gi|310287286|ref|YP_003938544.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|311064134|ref|YP_003970859.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|313139990|ref|ZP_07802183.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|309251222|gb|ADO52970.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|310866453|gb|ADP35822.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] gi|313132500|gb|EFR50117.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 239 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 14/227 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ LA +I + +E ++ V G ++ K D +I+D+ L + G E Sbjct: 14 ILVVEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIMLPVMDGLEA 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + + VA PV IL+ + DKV GL +GADDY++KPF+ EL+AR +A++RR Sbjct: 74 TKRI-VADRPVPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 132 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + ++ G L ++ + V V G ++HLT E+ ++ L+ + + LT+E Sbjct: 133 KVIAKNSENEKILNFGSLVIDPAQRLVTVNGEQVHLTPTEFDLLVTLARKPKSVLTREKL 192 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++D D + +D + LR KL G I TV G GY Sbjct: 193 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSETIRTVHGVGYAF 234 >gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 235 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ + + L+ F V G + + + E D +LD+ L D+ GF Sbjct: 9 KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADEPDLAVLDVMLPDMDGFT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R LR A PV L+ DKV GL G DDY++KPF+ +E+VARIRA++RR+ Sbjct: 69 ITRKLRAAGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTAS 128 Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + I DL ++ DA V G I L+ E++++ L + N L+K L+H++ Sbjct: 129 GEDENATISVADLELDDDAHEVRRAGEIIDLSPTEFKLLRYLMMNPNRVLSKSQILDHVW 188 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + + I++ +I LR+K+ I+T G GY++R Sbjct: 189 EYDFNGDASIVESYISYLRRKVDRPE-WPALIQTKRGVGYLMR 230 >gi|296111122|ref|YP_003621503.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832653|gb|ADG40534.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DD +A +E+ LK+E + + G++ + +L + +ILD+ + ++ G Sbjct: 1 MKILVVDDDIEIAELLEIYLKNEGYEPIMAVDGKEALSKLNTNPDIALMILDVMMPNMNG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 EV++ +R P+ +LS S DK++GL +GADDY++KPFN E++AR+R+++RR+ Sbjct: 61 LEVVKVVR-KDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119 Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q ++ G L +N D+ V+ G ++LT E+ ++ LL+ N + + Sbjct: 120 ENSVQDKTPDVLDIGSLFINKDSHEVKTADGDLVNLTALEFGILYLLASHPNRVFSADDI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G I+TVWG GY Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGY 224 >gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis] Length = 233 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 8/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E F V+ GE+ +E K + D I+LDL L + G + Sbjct: 3 KILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R TP+ ++S S DKV GL+ GADDY++KPF+ EL+ARI+A +RR Sbjct: 63 VAREIRKTS-DTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 S + + ++ G+L +N G ++ LT +E++++ L+ +T+E Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNGKQLDLTHREFELLYYLAQHLGEVITRENL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ +V+ +DV + +LR+K+ + Y+ T G GY + Sbjct: 182 LETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYM 228 >gi|293402081|ref|ZP_06646220.1| KDP operon transcriptional regulatory protein KdpE [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304473|gb|EFE45723.1| KDP operon transcriptional regulatory protein KdpE [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 227 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 3/225 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILLIEDDK++ + + L+++++ V + G +GI L D I+LDLGL DI G E Sbjct: 4 KILLIEDDKSIQRFLRISLETKDYKVISAETGIEGISLYMTDNPDLILLDLGLPDIDGME 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL +R A+ + ++S ++KV L GADDYI+KPF+ EL+AR+R +R+ Sbjct: 64 VLSQIR-AQSEVAILVVSARGQEQEKVEALDHGADDYITKPFHINELLARVRVALRKKTS 122 Query: 122 HA-QSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 ++ + T D L ++ + V V+ IH+T EY+++ LL LT + ++ Sbjct: 123 DVIKTKVFTMDTLKIDFEKYKVYVEDKEIHMTPIEYKLLVLLVENAGKVLTHSFIIRKIW 182 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + + + VF+ +R+K+ + YI T G GY E+ Sbjct: 183 GYSTTEDSQSLRVFMANIRRKIEKDSAHPRYIITEVGVGYRFVES 227 >gi|284921875|emb|CBG34950.1| two-component response regulator [Escherichia coli 042] Length = 239 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + + G DG+ L ++ IILD+ L + G+ Sbjct: 17 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR AK TPV L+ S++D+VRGL SGA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 77 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SL ++G L ++ +++V I LT KE+Q++ LL+ R + + + + ++ Sbjct: 136 ALNSSLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +DV I +LR K+ + K I T+ G GY Sbjct: 195 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LISTIRGMGY 232 >gi|326201098|ref|ZP_08190970.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988666|gb|EGD49490.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 233 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 122/229 (53%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++EDD+ + I L E + V T G IE + +F +ILD+ L I G+ Sbjct: 5 IKILIVEDDRDINRLIADNLVKEGYCVTSTYDGAAAIEYFEADKFQLVILDIMLPKIGGY 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EVL+ +R K +TPV ILS DK+ GL GADDY++KPF EL AR++A +RR Sbjct: 65 EVLQKIR-EKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRFL 123 Query: 119 ---SRGHAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ IV D+ ++++ V+V G+ + LT KE+++++L TK Sbjct: 124 KFSCEPQLQTQIVRHMDIEMDINTYEVKVGGNSVTLTAKEFEILKLFLKNPKKVFTKNQM 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + V I +LR+K+ YI+T+WG GY L E Sbjct: 184 FKSIWGENYINDENTVMVHIRRLREKIEKDPSNPRYIQTIWGIGYKLVE 232 >gi|258514364|ref|YP_003190586.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778069|gb|ACV61963.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 235 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 9/232 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D++ + I+ L+ E + V G ++L + + D IILD+ L + G V Sbjct: 4 VLVVDDEQNIIEIIKFNLEREGYQVITARDGTTALQLARSEKPDLIILDIMLPEQDGLAV 63 Query: 63 LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R L+ + + P+ ++S DK+ GL+ GADDY++KPF+ ELVAR++A +RRS Sbjct: 64 CRLLQQEQKTRGIPIIMVSARGDELDKILGLEMGADDYVTKPFSPRELVARVKARLRRSE 123 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++ +V G+L ++ D +E+ G + +LT KE+++I L+ + +++ Sbjct: 124 EVETTPEKPVENTLVRGNLLIDQDRYMIELGGVKQYLTPKEFELIRFLARQPGKVFSRDY 183 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 L ++ + + +DV I +R+KL + YIETV G GY +E++ Sbjct: 184 LLEQIWGYDFVGDSRTVDVHIRHIRQKLEGMDASQQYIETVRGVGYRFKESS 235 >gi|304398764|ref|ZP_07380635.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304353711|gb|EFM18087.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 231 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 123/229 (53%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IEDD A +E LK EN+ V + G G++ + ++ D I+LD+ L + G E Sbjct: 5 RILIIEDDADAAGVLEAYLKRENYEVMIVGDGPGGLDAARRWQPDLILLDIMLPGMNGTE 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL ALR + TPV +++ MS D++ L+ GADDY+ KP++ E+VAR++A++RRS+ Sbjct: 65 VLAALR-RRDDTPVIMVTAMSDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRSQN 123 Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 A ++ L V+ A T ++ R+ LT E+ ++ L T+ Sbjct: 124 SAPVTEILRWAGLVVDPIALTAVIECDSGTSRRLDLTPTEFSLLVTLMRAPTRPFTRLFL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 L H D E +++D + LR+KL AAG + + V GY R+ Sbjct: 184 LEHCLPESDALE-RVVDTHVYNLRRKL-EAAGISDVLPAVRSVGYRFRQ 230 >gi|227540357|ref|ZP_03970406.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227239681|gb|EEI89696.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 223 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 6/222 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ L S++ L++E + V V + Y +D I+LD+ L G Sbjct: 1 MKILIVEDELELQRSVQEFLEAEQYVVEVASDYSSALSKINLYTYDCILLDINLPGGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L LR K I+S SI+DK+RGL GADDY++KPF+ EL ARI+A++RR + Sbjct: 61 TLLDELR-GKEQQHTIIISARDSIDDKIRGLDLGADDYLTKPFHLSELNARIKAVLRRKQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L +N D +++ V +H + KE+ + L KN +TK H++ Sbjct: 120 LAGNPVVQLNNLQINYDTRSICVDDQDLHFSRKEFDVFSFFVLNKNKLVTKTALAEHVW- 178 Query: 181 GRDEPEVKIIDVF---ICKLRKKLSNAAGGKNYIETVWGRGY 219 G D +D I +RKKL I+ ++G GY Sbjct: 179 GDDSDMADNLDFIYSQIKNIRKKLKEHHAQLE-IQAIYGVGY 219 >gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 129/223 (57%), Gaps = 5/223 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + ++ LK+ + ++ G + + + K + + I+LDL + + GF+ Sbjct: 5 KILIVDDEEHIVELLDFNLKNSGYETFIATDGIEAVRIAKEEKPNLILLDLMIPGMDGFD 64 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V + ++ K +T + +L+ DK+ GL+ GADDYI+KPF+ EL+AR++A++RR+ Sbjct: 65 VCKEIKKDKEMKNTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRRT 124 Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + L V+ + V++QG+++ LT KE++++++L K L +EM L+ Sbjct: 125 ASFNVEENDIYESKTLKVDFERHEVKIQGNKVDLTLKEFELLQILIKNKGKILKREMLLD 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + +DV I LRKK+ +IET+ G GY Sbjct: 185 KIWGYEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGY 227 >gi|167566789|ref|ZP_02359705.1| DNA-binding heavy metal response regulator [Burkholderia oklahomensis EO147] gi|167573865|ref|ZP_02366739.1| DNA-binding heavy metal response regulator [Burkholderia oklahomensis C6786] Length = 230 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 4/233 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M++L++ED+ ++ L F T G G+ + +D ILD+ L G+ Sbjct: 1 MKVLIVEDELKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+R LR TPV L+ ++D+V+GL+ G DDY++KPF+ EL+AR+R+++RR + Sbjct: 61 TVVRELRRTH-RTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ +L ++L + QG+ I LT KE+ ++ LL R+ L + + + ++D Sbjct: 120 ATDAPVLRVANLELDLIQRKARRQGNTILLTAKEFLLLWLLMRRQGEILPRSLIASQIWD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233 + + ++D I ++R K+ K I TV G GYVL + + E+CE L Sbjct: 180 INFDSDSNVVDAAIKRVRAKVDQDYEPK-LIHTVRGMGYVLEQ--RGESCESL 229 >gi|315028795|gb|EFT40727.1| putative regulatory protein VanR [Enterococcus faecalis TX4000] Length = 258 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 12/226 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+I+DDK L H ++ L EN + G++GI K E+ +ILD+ + + GF+ Sbjct: 31 KVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMDGFQ 90 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 VL +R PV +L+ S KV GL+SGADDY++KPF+ +E +AR+ +++RR Sbjct: 91 VLEKIRETN-RLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTN 149 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S + +L+++L++++V + + L KE+ ++ + + LTK+ Sbjct: 150 FNSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFE 209 Query: 177 HLYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ EP V I I KLRKK+ + YI+TV G GY Sbjct: 210 KVW---QEPYVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGY 252 >gi|299146067|ref|ZP_07039135.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|298516558|gb|EFI40439.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] Length = 224 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ +A IE LK +V V G+ G ++ + FD +ILD+ + I G E Sbjct: 3 KILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDKPFDLLILDIIMPKINGLE 62 Query: 62 VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R R + PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++ Sbjct: 63 LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ +L ++ + + + I LT KEY+++E + L++ L ++D Sbjct: 123 EVPSNLLTCDNLVLDCNTRKAKRGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+DV++ LR K+ K I TV G GY++ Sbjct: 183 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 222 >gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 228 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 6/225 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++LA + +L+ E F + G + D ++LDL L + G + Sbjct: 3 RVLIVEDEESLADPLAFLLRKEGFETVIAGDGPAALTEFDRSGADIVLLDLMLPGMGGND 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR A+ S PV +++ S DKV GL+ GADDY++KP++ EL ARIRA++RR Sbjct: 63 VCKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQE 121 Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S A+ ++ G + +++D V V + L KE+ ++E L + LT+ ++ Sbjct: 122 ADSETSAEGVLEAGPIKLDVDRHLVSVHSKHVTLPLKEFDLLEYLMRNRGRVLTRGQLID 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + K +DV + +LR K+ + + + TV G GY L Sbjct: 182 RVWGADYVGDTKTLDVHVKRLRSKIEDDPAKPDRLVTVRGLGYKL 226 >gi|332754263|gb|EGJ84629.1| transcriptional regulatory protein qseB [Shigella flexneri 2747-71] Length = 219 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD + I+ L F+V G G E +DA+ILDL L + Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDSR 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++LR R PV L+ ++ ++V GL+ GADDY+ KPF E+ AR+ A++RR+ Sbjct: 61 DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G A + + G++ ++ + + G + L KE+ ++ELL L +++ LY Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E ++V + LR+KL G ++I TV G GY L E Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGE 218 >gi|331002058|ref|ZP_08325578.1| hypothetical protein HMPREF0491_00440 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411854|gb|EGG91259.1| hypothetical protein HMPREF0491_00440 [Lachnospiraceae oral taxon 107 str. F0167] Length = 223 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 118/202 (58%), Gaps = 2/202 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED+ L+ + + + + V GE +EL FD +I D+ + + G Sbjct: 1 MRILLAEDEVGLSRAYATAFRMQGYEVVQAFDGERALELASSEIFDLMIFDIMMPKMTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119 EVL+ +R A ST + IL+ MS + DK+ GL GAD+Y++KP + EL+ARIR++ RR Sbjct: 61 EVLKKIRDAGNSTYIIILTAMSELNDKIEGLDLGADEYLTKPIDLGELLARIRSLERRID 120 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++++ G + +N+ + + + + I L GKE +++E+L L KN L+ + NH++ Sbjct: 121 KNFNENILTFGSVKLNVAEQELSAK-NSIILAGKETKLMEVLMLNKNKKLSTDYIYNHVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKL 201 ++ + + ++I L++KL Sbjct: 180 SKDEDSDAGYVWIYISYLKQKL 201 >gi|329116124|ref|ZP_08244841.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus parauberis NCFD 2020] gi|326906529|gb|EGE53443.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus parauberis NCFD 2020] Length = 222 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 120/221 (54%), Gaps = 8/221 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+I+DD L I +L +N+ V T L + I+L K +D IILD+ + DI GF Sbjct: 1 MRILVIDDDIDLLKMIRTIL-CKNYQV-DTFLMPNPIDLNKLKVYDLIILDVTMPDISGF 58 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E L+ R I +P+ +L+ +DK+ G GADDYI+KPF+ EL AR+ A +RR R Sbjct: 59 EFLKKYRDI-IDSPILLLTAKDFEKDKIEGFALGADDYITKPFSINELRARVEAHIRRER 117 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178 I+ +S +L ++ V ++LT EY + ELL K +KE L Sbjct: 118 REKHVRIIDSMVSCDLQSRQVFCFDSEVNLTSSEYAICELLLKNKGQVFSKEKIYIKLYG 177 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 YDG + I + I +RKK ++ G N I+T+WG GY Sbjct: 178 YDGNGDSNTSITER-IKLIRKKFTSL--GINPIKTIWGVGY 215 >gi|308187241|ref|YP_003931372.1| Transcriptional regulatory protein basR/pmrA [Pantoea vagans C9-1] gi|308057751|gb|ADO09923.1| Transcriptional regulatory protein basR/pmrA [Pantoea vagans C9-1] Length = 226 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 19/228 (8%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53 M+IL++EDD L + L L+ E + DG+ + E + ++LDLG Sbjct: 1 MKILIVEDDALLLQGLMLALEGEGYVC-------DGVTRVRDAEAHFASGLYSLVVLDLG 53 Query: 54 LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113 L D G L LR K TPV IL+ +I +++ GL +GADDY+ KPF+ +EL+ARIR Sbjct: 54 LPDEDGLHFLIRLRRQKKMTPVLILTARDTISERIAGLDAGADDYLIKPFSLDELLARIR 113 Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A++RR S + G L++++ + + + + LT KE+ ++ L L+ + +E+ Sbjct: 114 ALIRRHVNQGDSHVRVGALALDMTHRQITLSDVLLDLTPKEFAILSRLMLKAGNPVHREI 173 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +Y+ EP ++V I LR K+ GK+ I TV G GY L Sbjct: 174 LYQDIYNWETEPSTNTLEVHIHNLRDKI-----GKSAIRTVRGFGYAL 216 >gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550] Length = 224 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 2 MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 60 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119 Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + + +I G++ + + V V G I LT +E+ + +L ++ L Sbjct: 120 KKTEVAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL + YI+T++G GY L Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222 >gi|188994617|ref|YP_001928869.1| probable two component system response regulator [Porphyromonas gingivalis ATCC 33277] gi|188594297|dbj|BAG33272.1| probable two component system response regulator [Porphyromonas gingivalis ATCC 33277] Length = 245 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 3/225 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ L +I+ L E + V +G++ Y++D I+LD+ L D G Sbjct: 1 MKILIIEDEPDLRETIQKFLLGERYIVETAATMNEGLDKVLVYDYDCILLDIMLPDGNGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ L+ + + I+S +IEDKV+G++ GADDY++KPF+ EL ARI+ ++RR Sbjct: 61 TLLKELKKRGKTENLIIISAKDAIEDKVQGIELGADDYLTKPFHLLELNARIKGLIRRKT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 H I G++S+ D V V+GH + L KEY ++ L R N + K ++ Sbjct: 121 AHGAMEIKLGNVSLVPDRFEVAVKGHPLELKRKEYDILYHLMTRPNRLVDKAALAEAVWG 180 Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D D+ + + I LRK++ N AG I++V+G GY L E Sbjct: 181 DYIDQADNYDFVYAQIKNLRKQM-NDAGATIEIKSVYGFGYKLIE 224 >gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 229 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 RIL+ +D++ + + L+ E + G + IE K F ++LD+ + ++ G Sbjct: 6 FRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGL 65 Query: 61 EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +R+ + S P+ +L+ S D++ GL+ GADDYI+KPF+ EL+ARI A +RR+ Sbjct: 66 TA--CMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRT 123 Query: 120 RGHAQSLIVTGD---LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ T D LS++++ + V V+G ++LT KE+ ++ L ++E L+ Sbjct: 124 HSFSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLD 183 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++ ++ +D I LR KL A G YI+TVWG GY N Sbjct: 184 QIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229 >gi|78183737|ref|YP_376171.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|78168031|gb|ABB25128.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] Length = 253 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+ A+ + + L+ + V + GE +EL D I+LD+ L + GF V Sbjct: 13 VLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDGFAV 72 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121 R LR A+ P+ LS + +I ++V GL GADDY+ KPF+ +EL ARI I+RR RG Sbjct: 73 CRRLR-AESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 131 Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 +A Q ++ G+L V+ + + V RI+LT E+ ++ELL + + Sbjct: 132 NAVVESRELPTGQGVLRLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 191 Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L L Y R +++++DV++ +LR KL I TV G GY Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241 >gi|313884593|ref|ZP_07818354.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] gi|312620377|gb|EFR31805.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eremococcus coleocola ACS-139-V-Col8] Length = 237 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 13/239 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58 M IL+IED+++++ +E+ ++EN+ + G +G E K +D +ILDL L + Sbjct: 1 MNILMIEDNESVSEMMEMFFENENYTATFKNDGLEGFEAYKAEPKHWDIVILDLNLPSMD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G ++ R +R TP+ +L+ S D+V GL+ GADDY++KPF+ L+AR++A+ RR Sbjct: 61 GMQICRQIRKISAETPIIMLTARDSESDQVIGLEMGADDYVTKPFSPMTLLARMKALHRR 120 Query: 119 SR--------GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTL 169 ++ A+ + T L +N + I +LT KE+ ++ + Sbjct: 121 AQIVPSDQHEADAEFDVTTDHLKINTATREARYNDQVIENLTPKEFDLLVTFAKSPKRVF 180 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 +++ L L++ + + +D I KLR+K+ G I+TVWG GY +E E Sbjct: 181 SRDDLLTSLWEDPFYGDERTVDAHIKKLRQKIE--VVGPQLIQTVWGVGYKYQEPGDQE 237 >gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1] gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1] Length = 235 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 10/235 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K ++ ++ L E + V+V GE+ ++ D I+LDL L + G E Sbjct: 3 KILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDGLE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V R +R P+ +++ S DKV GL+ GADDY++KPF+ ELVAR++A +RR Sbjct: 63 VARQVR-KNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 121 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + S I GDL ++ +A V +G I LT +E++++ L+ +T+E Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 L ++ +V+ +DV + +LR+K+ + ++ T G GY LR N ++E Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYLR-NPENE 235 >gi|325912950|ref|ZP_08175324.1| putative sensory transduction protein RegX3 [Lactobacillus iners UPII 60-B] gi|325477764|gb|EGC80902.1| putative sensory transduction protein RegX3 [Lactobacillus iners UPII 60-B] Length = 245 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 +++L+++DDK + + + LK+EN++ V G + L KF IILD+ + ++ Sbjct: 18 VKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREA--LTKFRMDPSITCIILDIMMPEM 75 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++++ +R P+ ++S + DK++GL +GADDY++KPFN E++ARIR+++R Sbjct: 76 SGLDLIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 134 Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RS + S LI G L +N D+ V+ + G +I+LT E+ ++ LL+ + Sbjct: 135 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 194 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G ++TVWG GY Sbjct: 195 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 241 >gi|238921581|ref|YP_002935096.1| hypothetical protein NT01EI_3734 [Edwardsiella ictaluri 93-146] gi|238871150|gb|ACR70861.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 243 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++EDD +A + L L E + V G+ G+ L + +DA+ILDL L + G + Sbjct: 11 RILVVEDDTLIAELLTLHLCDEGYRVTHAADGDRGMALVEQGGWDALILDLMLPGVDGLD 70 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + R +R TP+ I S SS +V GL+ GADDY++KPF+ ELVAR++A+ RR Sbjct: 71 ICRRVRTMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQEA 130 Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 ++L++ G L+++ A+ V V I LT +E+ ++ + ++ L Sbjct: 131 MGRNLMLEGGRLSYGLLTIDPMARAVWVGERPIELTPREFDLLYFFARHPGQVFSRLQLL 190 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + + ++ I +LR K+ I TVWG GY Sbjct: 191 DKVWGYQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGY 234 >gi|226946662|ref|YP_002801735.1| response regulator [Azotobacter vinelandii DJ] gi|226721589|gb|ACO80760.1| response regulator [Azotobacter vinelandii DJ] Length = 267 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ L ++ L + + V D G+ L FD ++LD+ + G Sbjct: 30 RILVVDDEQDLRALLQRYLSDQGYAVRALDGGQHLERLLGRERFDVLVLDVMMPGEDGLS 89 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R LR + P+ +L+ D++ GL+ GADDY+ KPFN EL ARI A++RR R Sbjct: 90 LCRRLRARGETIPIVMLTARGDPLDRIIGLEMGADDYLPKPFNPRELQARIEALIRRQRM 149 Query: 121 --GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H L I G S++L + + G I LT E+ +++ L+ L ++ Sbjct: 150 LGAHTGPLPGDGRIDFGPFSLHLGERRLRRDGGDIPLTSGEFALLQALARHPGRPLGRDR 209 Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + L GRD E + IDV + +LR+ + + YI+TVWG GYVL Sbjct: 210 LIE-LSRGRDHEASDRSIDVQVMRLRRAIEDDPAQPRYIQTVWGLGYVL 257 >gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 226 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 121/218 (55%), Gaps = 1/218 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD ALA I ++L++E + + G ++ K D ++LDL L + G E Sbjct: 4 RILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAFKSAAPDLVLLDLMLPGMDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + P+ +L+ S D V+GL+SGADDY+ KPFN +ELVAR+R +R + Sbjct: 64 ICARIR-EESGVPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRLRPASD 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 A + GDL +++ V +I+LT E++++ L+++ T+EM L ++ Sbjct: 123 AATGTLTVGDLELDVTGHEVRRGESKINLTPLEFELLLALAMKPEQVFTREMLLEQVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + ++++V + +LR K+ + TV G GY Sbjct: 183 HYKADTRLVNVHVQRLRAKVEEDPDNPKIVMTVRGVGY 220 >gi|330874632|gb|EGH08781.1| heavy metal response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 224 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYVVDIATTGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR ++T + +++ +E+KV+GL+ GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 EVLSRLR-KTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220 >gi|319762980|ref|YP_004126917.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330825060|ref|YP_004388363.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117541|gb|ADV00030.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329310432|gb|AEB84847.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 226 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL ED++ L + L+ V D G ++DA++LDLGL G Sbjct: 1 MRILLAEDERPLGEWLAKALEQGGCRVDWCDDGRLVERALAERDYDALVLDLGLPGRDGG 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +LR LR PV +L+ ++ ++VR L GADD+++KPF EL AR+ A+VRR+R Sbjct: 61 TILRRLRARDERIPVLVLTARDTLGERVRSLNEGADDFLAKPFELAELEARLTALVRRAR 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + G L + + + + L+ +E+ +++ L R LT++ ++ ++ Sbjct: 121 GSEHPRLACGPLQFDTVTRQFTLSAEPLQLSPREHALLKALVQRSGEPLTRQQAMDRVFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +IDV + +LRK+L G I T G GYVL Sbjct: 181 DDEDVQPSVIDVLLHRLRKRLE---GSGVRIHTYRGLGYVL 218 >gi|209573922|gb|ACI62899.1| two component response regulator CusR1 [Acidithiobacillus thiooxidans] Length = 224 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 118/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IED+ A ++ + V V D G DG L + E++ I+LDL L G+ Sbjct: 1 MKILVIEDESKTAAFLKKGFNELGYVVDVADNGVDGQHLAEIGEYEVIVLDLMLPQRDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ +R PV +L+ + ++ +V GL+ GADDY+ KPF EL+ARI +I+RRS Sbjct: 61 WVLQEIRKRHPDQPVILLTALDAVAQRVEGLRRGADDYLVKPFAFSELLARIHSILRRSN 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + I DL ++L + I+L +E++++ L LT+ ++D Sbjct: 121 LRTEETIYYADLEMDLLRHKIWRAATPINLAPQEFRLLAYLMRFPGEVLTRTRIAEQVWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + ++DV I +LR+K+ + K I T+ G GYVL Sbjct: 181 MHFESDSNVVDVAIRRLRRKVDDPFPDK-LIHTLRGVGYVL 220 >gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 232 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +D+ +A IE+ L+ E ++V GE+ I + + D ++LD+ + + G+ Sbjct: 4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R AK P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 64 EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 +S++ G ++++ + +TV V G +I LT KE+ ++ LL+ E Sbjct: 123 TLNQPKVAENKSVLQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I LRKKL I+TVWG GY Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230 >gi|221065578|ref|ZP_03541683.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220710601|gb|EED65969.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 222 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L +EDD+ + +I L+ E +V F A+ILDLGL D G Sbjct: 1 MRVLCVEDDELIGQAIRAGLRREGIDVVHVTTAMQAEAAVTQEAFHALILDLGLPDKEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ +R + S P+ I+S +IE ++ GL GADDY+ KPF+ EL R+ A++RR++ Sbjct: 61 ELLKIIRAIEPSMPILIVSARDAIEHRLMGLHQGADDYLIKPFDLRELAVRVHALLRRTQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G + I G L + + + L+ +E +I L+ +N+ + E+ L+ Sbjct: 121 GRSSQWIHAGPLRLEPATGQAWLHEQAVQLSRREIDLIAHLANARNSWMRSEVLNERLFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E ++V I +RKKL N A IE G GY L Sbjct: 181 LHEEVGSNALNVHIHNIRKKLGNEA-----IENSRGLGYRL 216 >gi|315653104|ref|ZP_07906029.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|315489469|gb|EFU79106.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] Length = 245 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 +++L+++DDK + + + LK+EN++ V G + L KF IILD+ + ++ Sbjct: 18 VKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREA--LTKFRMDPSITCIILDIMMPEM 75 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++++ +R P+ ++S + DK++GL +GADDY++KPFN E++ARIR+++R Sbjct: 76 SGLDLIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 134 Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RS + S LI G L +N D+ V+ + G +I+LT E+ ++ LL+ + Sbjct: 135 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 194 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G ++TVWG GY Sbjct: 195 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 241 >gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279] gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279] Length = 239 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+KA+ ++ L+ E + V G+ +E + ++FD I+LDL L + G Sbjct: 7 KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA+ RR+ Sbjct: 67 VCRAIRDTS-DVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRTHL 125 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 + + GDL +++ + V+G + LT E++++ L+ + E Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L + ++G + + ID + LR KL + ++ TV G GY A+ E + Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAQPEKAD 238 >gi|109453374|gb|ABG34167.1| PhoP [Salmonella bongori] Length = 213 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 MR+L++ED+ L H +++ L+ V D ED E + + D I+DLGL D Sbjct: 1 MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++R R + +S PV +L+ +DKV L SGAD+Y++KPF+ EE++AR++A++R Sbjct: 58 DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADEYVTKPFHIEEVMARMQALMR 117 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R+ G A +I V+L + + V I LT EY ++E L ++K+ + Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214 LY + E IDV + +LRKK+ A + I TV Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213 >gi|186475768|ref|YP_001857238.1| osmolarity response regulator [Burkholderia phymatum STM815] gi|184192227|gb|ACC70192.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 244 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 110/209 (52%), Gaps = 12/209 (5%) Query: 23 ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 + FNVYV + +L FD ++LDL L G + R LR + TP+ +L+ Sbjct: 32 QGFNVYVAENAPSMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAKG 91 Query: 83 SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLSV 134 D++ GL+ GADDY+ KPFN ELVARI A++RR + + G+ ++ Sbjct: 92 EDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQSPSELPGAPSETSEVFEFGEFAL 151 Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KIIDV 192 NL +T+ G I LT E+ ++++ + L++E + L GR E EV + +DV Sbjct: 152 NLATRTLTKAGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRSLDV 209 Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVL 221 I +LRK + G +I+TVWG GYV Sbjct: 210 QISRLRKLIEPDPGSPRFIQTVWGLGYVF 238 >gi|57234870|ref|YP_181048.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225318|gb|AAW40375.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 225 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 6/227 (2%) Query: 1 MRILLIEDDKALAHSIELMLKS--ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58 M++L IEDDK + S+ L+ KS + LG+ GIE +FD I+DLGL DI Sbjct: 1 MKLLFIEDDKKIVESVFLLFKSFWPDMETKAVHLGKTGIEAVYKDDFDIAIIDLGLPDID 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G VL+ +R A S P+ IL+ ++ ++ + GADDYI+KPF EL+AR++++++R Sbjct: 61 GINVLKQIR-AFSSLPILILTARNNEQEIFTAFELGADDYITKPFQPLELIARVKSLLKR 119 Query: 119 SRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +Q L I G K + + +R++LT E Q++ +L + +T++ Sbjct: 120 LNKTSQDLGIKYGHWRFGNSLKEISYKNNRVNLTVTEGQLLHILLSKTGSTVSYADISKS 179 Query: 178 LYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ GR+E K I I ++R+KLS G K +I + G GY + E Sbjct: 180 IW-GRNEYYAKETIKTHIMRIRQKLSRIDGAKEFIINIPGVGYQITE 225 >gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 233 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 3/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD ALA + K E+F V T GE+ + L + D ++LD + + G E Sbjct: 5 RMLLVEDDAALAELLIWHFKREDFEVSHTVDGEEALLLAQETVPDIVLLDWMVESLSGIE 64 Query: 62 VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 V R LR + P+ +L+ ED+VRGL++GADDY++KPF+ ELVAR+ A++RR Sbjct: 65 VCRRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124 Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R A + D+ ++ V G I L E+++++ ++E L+ + Sbjct: 125 RPALAGETLTFSDVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + E++ +DV I +LRK ++ ++ I TV GY L Sbjct: 185 WGQDSDIELRTVDVHIRRLRKAINGDGRYQDIIRTVRSAGYAL 227 >gi|300923861|ref|ZP_07139879.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1] gi|300419894|gb|EFK03205.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1] Length = 260 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + + G DG+ L ++ IILD+ L + G+ Sbjct: 38 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR AK TPV L+ S++D+VRGL SGA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 98 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SL ++G L ++ +++V I LT KE+Q++ LL+ R + + + + ++ Sbjct: 157 ALNSSLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +DV I +LR K+ + K I T+ G GY Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253 >gi|291543087|emb|CBL16197.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] gi|291549580|emb|CBL25842.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 233 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 +L+I+DDK L ++ ++ EN + V G +G+ L + + IILD+ + D+ GF Sbjct: 4 VLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEENKDTCSLIILDVMMPDMNGF 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL+ +R K + PV +L+ S EDKV GL+ GADDY++KPF EL+AR+ +++RR Sbjct: 64 QVLQEIR-KKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYT 122 Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 G + ++ D+ ++ +TV +Q + LTGKE+ ++ L+ K TK+ Sbjct: 123 TLNPVAGSEAATMLLKDMVIDKVNRTVTLQNLPVELTGKEFDLLVFLASNKGRVFTKKQI 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + I FI KLRKK+ YI+TV G GY Sbjct: 183 YTQVWAEEYAFDDSNIMSFISKLRKKIEPNPEQPFYIQTVRGVGY 227 >gi|212692570|ref|ZP_03300698.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855] gi|237709115|ref|ZP_04539596.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|237724402|ref|ZP_04554883.1| two-component system response regulator [Bacteroides sp. D4] gi|265752640|ref|ZP_06088209.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|212664855|gb|EEB25427.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855] gi|229437271|gb|EEO47348.1| two-component system response regulator [Bacteroides dorei 5_1_36/D4] gi|229456811|gb|EEO62532.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|263235826|gb|EEZ21321.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] Length = 224 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I+L+ED+ +A IE L+ V V G G EL + FD +ILD+ + + G E Sbjct: 3 KIILVEDEINIASFIERGLREFGHEVSVVYDGNAGWELLQNESFDLLILDIIMPGMNGLE 62 Query: 62 VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R R +PV +L+ + + +D V+GL +GADDY+ KPF+ +EL ARI+A++RRS+ Sbjct: 63 LCRMYRQRFGYHSPVVMLTALGTTDDIVKGLDAGADDYLVKPFSFQELEARIKALLRRSK 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +V GDL ++ + I LT KEY+++E L + L++ L ++D Sbjct: 123 EVPVQQLVCGDLILDCTLRRARRGNMDIDLTVKEYRLLEYFLLHQRAVLSRLTLLRDVWD 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + ++DV++ LR K+ K I TV G GY++ + Sbjct: 183 KNFDTNTNVVDVYVNYLRAKIDKGFEDK-LIHTVVGVGYMMTD 224 >gi|70732535|ref|YP_262298.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] gi|68346834|gb|AAY94440.1| DNA-binding heavy metal response regulator, putative [Pseudomonas fluorescens Pf-5] Length = 224 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ A + L + V + G DG+ L + + +D +ILD+ L I G+ Sbjct: 1 MRILVIEDEPKTADYLHQGLTESGYVVDCANNGADGLHLTRQHAYDLVILDINLPHIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 VL +R ST V +L+ + DK+RGL GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 GVLGQIR-QDSSTRVMMLTAQGRLADKIRGLDLGADDYLVKPFQFPELLARVRTLMRRSE 119 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ DL ++ RI LT KE+ ++ LL + L++ ++ ++ Sbjct: 120 QAPVPDVLRVADLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRQSGVVLSRTQIISFVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 D + + +++V I +LR K+ + K I T+ G GYVL E Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFERK-LIHTLRGVGYVLEE 222 >gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 226 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ILLIED++ + L + V Y D G DG+ L + IILD+ L + G Sbjct: 1 MKILLIEDNQKTIQWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++VLRALR A +PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 60 WQVLRALRTAH-QSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L + G L ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 119 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 219 >gi|285019588|ref|YP_003377299.1| two component system regulatory protein [Xanthomonas albilineans GPE PC73] gi|283474806|emb|CBA17305.1| probable two component system regulatory protein [Xanthomonas albilineans] Length = 241 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 122/219 (55%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+I+D+ + +++ L+++ + V G +G+ + + ++LD+GL D G Sbjct: 14 RILVIDDEPQIRRFLDISLRAQGYRVQQAATGGEGLAQLAAHGAELVVLDVGLPDQDGHS 73 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RS 119 VLR LR S PV +L+ + +KV+ L +GA+DY++KPF +EL+ARIR ++R + Sbjct: 74 VLRELRQWS-SVPVIMLTVRAGEAEKVQALDAGANDYVTKPFGVQELMARIRVLLRMQPT 132 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A+ + G L +++ + V ++G + L+ KEY ++ LL +T+ L L+ Sbjct: 133 TGEAEPVFDDGHLHIHIGLREVRLEGEPLPLSRKEYALLALLLRHSGRVVTQPQLLRELW 192 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218 + + + + + KLR+KL ++A YI T G G Sbjct: 193 GPTHQDDTHYLRILVGKLRQKLGDSAVAPRYIATEPGVG 231 >gi|325679466|ref|ZP_08159046.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324108753|gb|EGC02989.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 224 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 10/226 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD + + ++L+ ++ G +G+ L E I+LDL L + G V Sbjct: 4 ILIIEDDAGINDMLRVLLRQNGYDTISAYSGTEGL-LAHGEEVSLILLDLMLPGLSGEAV 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117 ++ L+ K + PV + S + + KV GADDY++KPF+ EEL+ARI A +R Sbjct: 63 IKGLKEKK-NVPVIVTSAIHDVSKKVDLFALGADDYVTKPFHNEELLARISARLRNVLPE 121 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 +++G ++ D+ +N TV G + L+ E+ ++EL T TK + Sbjct: 122 QTKG---DVLTYKDIILNKSEHTVSCHGTAVELSKHEFALLELFMESPKRTCTKSRIYDT 178 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++D + + ++V I KLRKKL + ++YIETVWG GY LR+ Sbjct: 179 VWDYENSADDNTLNVHISKLRKKLKECSPDEDYIETVWGIGYRLRK 224 >gi|262277654|ref|ZP_06055447.1| phosphate regulon transcriptional regulatory protein PhoB [alpha proteobacterium HIMB114] gi|262224757|gb|EEY75216.1| phosphate regulon transcriptional regulatory protein PhoB [alpha proteobacterium HIMB114] Length = 226 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++ L+ED++++ +E LK E F V+ GE+ + K E D ++LD L D+ G + Sbjct: 4 KVFLVEDEQSIITLVEYNLKKEGFKFSVSSNGEEALHEIKEQEPDLVLLDWMLPDLSGID 63 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + R+L+ K P+ +L+ EDKV L +GADDYI+KPF ELVARI A++RRS Sbjct: 64 ICRSLKKDKKFQDLPIIMLTAKGQEEDKVAALNAGADDYITKPFGHAELVARINALLRRS 123 Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A+ V DL ++ + V +I L EY+M++ +++ L ++ Sbjct: 124 KPRVAEDKAVYEDLVIDRIQRKVFRNETQIDLGPTEYRMLDFFIKNPKRVYSRDQLLTNI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + E + +DV I +LRK + N G K I TV GY L Sbjct: 184 WPDNINVENRTVDVHIRRLRKAI-NLDGTKELIRTVRSAGYSL 225 >gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 233 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++D++ + ++ L+ E + V GE+ I+L K F +ILDL L I G Sbjct: 5 FKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKIFGE 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119 EV +R + P+ +L+ EDK+ GL GADDY++KPF+ ELVAR++A++RR+ Sbjct: 65 EVCSKIREFS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAY 123 Query: 120 RGH---AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 RG A+ LI+ GDL V++ V G + LT E++++ L T+E + Sbjct: 124 RGEHPLAEHLILNNGDLEVDIRKMKVLKSGKVVTLTPYEFKVLVSLLTNPGQVFTREQLV 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E + +D +I +R+K+ + NYI TV+G GY Sbjct: 184 EQAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 227 >gi|218899996|ref|YP_002448407.1| regulatory protein VanR [Bacillus cereus G9842] gi|218544954|gb|ACK97348.1| regulatory protein VanR [Bacillus cereus G9842] Length = 233 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 9/224 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V GE+G+E+ K + I+LD+ + I G + Sbjct: 6 ILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 ++V +I+ P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + ++ I GD+ VN+ + V + + LT +E++++ELL + L Sbjct: 124 MSGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIY 183 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V I K+R+K+ YI+TVWG GY Sbjct: 184 ERVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGY 227 >gi|153839375|ref|ZP_01992042.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ3810] gi|149747097|gb|EDM58085.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ3810] Length = 230 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL++ED+ ++ L + V + G DG+ E+D I+LD+ L + G+ Sbjct: 1 MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 +VL LR + I+TPV +L+ +ED+VRG + GA+DY+ KP+ EL+AR++ + R Sbjct: 61 QVLNTLRSSGINTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120 Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + Q+L V DL +++ + G + LT KEY ++ELL + L++ Sbjct: 121 AAQVVASPQTLRV-ADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIA 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++D + + +IDV + +LR K+ + + I TV G GY L E+ Sbjct: 180 SLVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDRPLIHTVRGMGYKLEES 227 >gi|329920981|ref|ZP_08277509.1| response regulator receiver domain protein [Lactobacillus iners SPIN 1401G] gi|328935257|gb|EGG31737.1| response regulator receiver domain protein [Lactobacillus iners SPIN 1401G] Length = 229 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 +++L+++DDK + + + LK+EN++ V G + L KF IILD+ + ++ Sbjct: 2 VKVLVVDDDKEIVELLSIYLKNENYDPIVACDGREA--LTKFRMDPSITCIILDIMMPEM 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++++ +R P+ ++S + DK++GL +GADDY++KPFN E++ARIR+++R Sbjct: 60 SGLDLIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 118 Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RS + S LI G L +N D+ V+ + G +I+LT E+ ++ LL+ + Sbjct: 119 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 178 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G ++TVWG GY Sbjct: 179 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 225 >gi|309806615|ref|ZP_07700611.1| response regulator receiver domain protein [Lactobacillus iners LactinV 03V1-b] gi|312870847|ref|ZP_07730952.1| response regulator receiver domain protein [Lactobacillus iners LEAF 3008A-a] gi|312873582|ref|ZP_07733629.1| response regulator receiver domain protein [Lactobacillus iners LEAF 2052A-d] gi|312875747|ref|ZP_07735742.1| response regulator receiver domain protein [Lactobacillus iners LEAF 2053A-b] gi|308166920|gb|EFO69103.1| response regulator receiver domain protein [Lactobacillus iners LactinV 03V1-b] gi|311088739|gb|EFQ47188.1| response regulator receiver domain protein [Lactobacillus iners LEAF 2053A-b] gi|311090835|gb|EFQ49232.1| response regulator receiver domain protein [Lactobacillus iners LEAF 2052A-d] gi|311093537|gb|EFQ51876.1| response regulator receiver domain protein [Lactobacillus iners LEAF 3008A-a] Length = 229 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 +++L+++DDK + + + LK+EN++ V G + L KF IILD+ + ++ Sbjct: 2 VKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREA--LTKFRMDPSITCIILDIMMPEM 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++++ +R P+ ++S + DK++GL +GADDY++KPFN E++ARIR+++R Sbjct: 60 SGLDLIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 118 Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RS + S LI G L +N D+ V+ + G +I+LT E+ ++ LL+ + Sbjct: 119 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 178 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G ++TVWG GY Sbjct: 179 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 225 >gi|126173246|ref|YP_001049395.1| two component transcriptional regulator [Shewanella baltica OS155] gi|152999605|ref|YP_001365286.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160874224|ref|YP_001553540.1| two component transcriptional regulator [Shewanella baltica OS195] gi|217974443|ref|YP_002359194.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304410397|ref|ZP_07392015.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307304489|ref|ZP_07584239.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125996451|gb|ABN60526.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151364223|gb|ABS07223.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160859746|gb|ABX48280.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|217499578|gb|ACK47771.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304350881|gb|EFM15281.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911891|gb|EFN42315.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315266458|gb|ADT93311.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 237 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 12/231 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD LA+ I LKS +V V G+ + Y+ D I+LD+ L + G Sbjct: 9 RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + L + P+ ++S + S ED+++GL+ GADDY+ KP + LVARI ++RR Sbjct: 69 LCEKLP-DYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQNQ 127 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 Q+ + G LS++ + + I LT E++++ LL+ + L++ ++ Sbjct: 128 PPQAESHCLTFGKLSIDPHTHAIRLNETEIDLTSHEFELLWLLASQAGQVLSRQYIYQLL 187 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 LN +DG+D + IDV I +LRKKL++ I+TVWG+GY+ A Sbjct: 188 LNIDFDGKD----RKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLFAPEA 234 >gi|332662904|ref|YP_004445692.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332331718|gb|AEE48819.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 224 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 2/223 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+ +A I L+ +F +V ++L +I DL + + G E Sbjct: 3 KILIIEDEAQIAGLISQTLQEMSFKTFVALDSSTALDLFDLISPQLVITDLVMPQVSGHE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R K S P+ +L+ + S ED V+GL +GADDY+ KPF EL AR+RA++RRS Sbjct: 63 LCAQIRNRKRSIPILMLTALGSTEDIVKGLDNGADDYMVKPFRIPELQARVRALLRRSAS 122 Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + I DL +N D K V I LT E++++E L K + L ++ Sbjct: 123 NTTAQISRLADLVLNHDTKEVSRNNESIKLTATEFRLLEYLMSHKGRLKARMEILEEVWG 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +P ++DV++ LR K+ + K + T G+G++L+E Sbjct: 183 INFDPGTNVVDVYVSYLRNKI-DKPFEKKLLHTQIGQGFILKE 224 >gi|332530601|ref|ZP_08406535.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis ATCC 19624] gi|332039938|gb|EGI76330.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis ATCC 19624] Length = 235 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 1/225 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED+ LA + + L++E F D G + + D I+LDL L + G Sbjct: 6 RILIVEDEPKLAQVLMVYLRAEGFATTHVDNGLAVEAAVRAHAPDVILLDLMLPGLDGIS 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R LR A P+ +L+ D++ GL+ GADDY+ KP+N E+VAR++A +RR+ Sbjct: 66 VCRQLR-AFCHAPLIMLTARVDELDRLLGLEVGADDYLCKPYNPREVVARVKAQLRRAAW 124 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L ++ G + LT E++++ L+ + L++ L+HL+D Sbjct: 125 GPPASAQPGTLQLDDATLRASYAGQALDLTPAEFRLLSSLAAQAGRILSRAQLLDHLHDD 184 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 + ID + LR+KL AA G++ I +V+G GY E Sbjct: 185 GRAITDRAIDSHVRNLRRKLDAAAPGRDPIRSVYGVGYAWEEPPP 229 >gi|309795924|ref|ZP_07690337.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7] gi|308120374|gb|EFO57636.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7] gi|320198658|gb|EFW73258.1| Putative two-component system response regulator YedW [Escherichia coli EC4100B] Length = 260 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + + G DG+ L ++ IILD+ L + G+ Sbjct: 38 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR AK TPV L+ S++D+VRGL SGA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 98 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 SL ++G L ++ +++V I LT KE+Q++ LL+ R + + + + ++ Sbjct: 157 ALNSSLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +DV I +LR K+ + K I T+ G GY Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253 >gi|291458362|ref|ZP_06597752.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp. oral taxon 078 str. F0262] gi|291418895|gb|EFE92614.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp. oral taxon 078 str. F0262] Length = 230 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+K L ++ L++ V G DG+ L K + + I+LD+ + ++ GFE Sbjct: 3 KILIIDDEKELVTLLQDELEARGHQVLAAYNGADGVSLAK-KQPELIVLDIMMPEMDGFE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R ++ P+ LS + DK+R L G DDYISKPF EL+ARI A +RR + Sbjct: 62 VCRKIR-DELLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + +L ++L +V++ G I L+ +EY ++ELL+L ++E Sbjct: 121 SQYINAEKKRTKLYFNELGIDLLEHSVKISGEAIPLSKREYDIVELLALHAGQVFSREHI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + + I K+RKK S + YI TVWG GY Sbjct: 181 YERVWGYDLEGDSYTVVEHIRKIRKKFSEVSPDTEYISTVWGIGY 225 >gi|30261916|ref|NP_844293.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527169|ref|YP_018518.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184751|ref|YP_028003.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319193|ref|ZP_00392152.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167633325|ref|ZP_02391650.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638767|ref|ZP_02397042.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686070|ref|ZP_02877292.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170707305|ref|ZP_02897760.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650467|ref|ZP_02933434.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566270|ref|ZP_03019188.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229603598|ref|YP_002866289.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684475|ref|ZP_05148335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724002|ref|ZP_05185788.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734778|ref|ZP_05192490.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741180|ref|ZP_05198868.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254759968|ref|ZP_05211992.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256542|gb|AAP25779.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502317|gb|AAT30993.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178678|gb|AAT54054.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167513231|gb|EDR88602.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167531363|gb|EDR94041.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127804|gb|EDS96676.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669767|gb|EDT20508.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083611|gb|EDT68671.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562405|gb|EDV16372.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229268006|gb|ACQ49643.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 232 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + + + L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G I+LT EY+++ L++ KN T E Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ R + V I +LR K+ +I+ VWG GY Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGY 228 >gi|310829931|ref|YP_003962288.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308741665|gb|ADO39325.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 230 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 8/225 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IEDD+ +A L+ +F V + G+ G+ +FD I+LDL L + GF Sbjct: 3 KILIIEDDRKIAELERDYLEINDFQVALAADGDTGLLFAVRDDFDLIVLDLMLPGVDGFA 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R +R K TP+ ++S DK+RGL GADDY+ KPF+ ELVAR++A + R Sbjct: 63 ICRRIREKK-ETPIIMVSAKRDDVDKIRGLGLGADDYMVKPFSPAELVARVKAHIGRFER 121 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + +I L ++ DA+ V ++G L KE+ ++ ++ N KE Sbjct: 122 LTSQEKRKQHHIIEINGLRIDKDARRVYLRGAETALANKEFDLLLFMAENPNIVFNKETL 181 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + V + +LR+K+ YIETVWG GY Sbjct: 182 FERVWGLDAVGDTTTVTVHVNRLREKIETDNREPRYIETVWGAGY 226 >gi|309805459|ref|ZP_07699506.1| putative sensory transduction protein RegX3 [Lactobacillus iners LactinV 09V1-c] gi|309808223|ref|ZP_07702132.1| putative sensory transduction protein RegX3 [Lactobacillus iners LactinV 01V1-a] gi|309810118|ref|ZP_07703964.1| putative sensory transduction protein RegX3 [Lactobacillus iners SPIN 2503V10-D] gi|312872201|ref|ZP_07732274.1| putative sensory transduction protein RegX3 [Lactobacillus iners LEAF 2062A-h1] gi|325911586|ref|ZP_08173994.1| putative sensory transduction protein RegX3 [Lactobacillus iners UPII 143-D] gi|308165277|gb|EFO67513.1| putative sensory transduction protein RegX3 [Lactobacillus iners LactinV 09V1-c] gi|308168511|gb|EFO70620.1| putative sensory transduction protein RegX3 [Lactobacillus iners LactinV 01V1-a] gi|308169617|gb|EFO71664.1| putative sensory transduction protein RegX3 [Lactobacillus iners SPIN 2503V10-D] gi|311092285|gb|EFQ50656.1| putative sensory transduction protein RegX3 [Lactobacillus iners LEAF 2062A-h1] gi|325476572|gb|EGC79730.1| putative sensory transduction protein RegX3 [Lactobacillus iners UPII 143-D] Length = 234 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57 +++L+++DDK + + + LK+EN++ V G + L KF IILD+ + ++ Sbjct: 7 VKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREA--LTKFRMDPSITCIILDIMMPEM 64 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G ++++ +R P+ ++S + DK++GL +GADDY++KPFN E++ARIR+++R Sbjct: 65 SGLDLIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 123 Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RS + S LI G L +N D+ V+ + G +I+LT E+ ++ LL+ + Sbjct: 124 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 183 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G ++TVWG GY Sbjct: 184 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 230 >gi|194291209|ref|YP_002007116.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424] gi|193225044|emb|CAQ71055.1| putative response regulator, CheY family [Cupriavidus taiwanensis LMG 19424] Length = 234 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 15/236 (6%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIEDD+ +A +E L V V G E + D +ILDLGL I G Sbjct: 1 MRILLIEDDRQIASGVEAGLSRAGHQVRVVHDGVYATEHLLREQHDLVILDLGLPGIDGM 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L R +TPV IL+ +EDK+ GL +GADDY+ KPF EL AR+R ++RRS+ Sbjct: 61 TLLARYRARNRTTPVIILTARDELEDKLSGLNAGADDYLIKPFALPELEARVRVLLRRSQ 120 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 H ++ + G L ++ + + + + + L+ +E+ ++ELL R+ ++K + Sbjct: 121 -HGEAAPERDVRLGRLRLSGNDRRMFIDARPLELSPREFAVLELLLQRQGRVVSKAQLQD 179 Query: 177 HLY-------DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 HL +G D I+V++ ++RKKL ++ I TV G GY+L+ A Sbjct: 180 HLATFAHPAGEGGDTVGDTAIEVYVHRVRKKLEDS---DVEIVTVRGFGYLLQIRA 232 >gi|315648396|ref|ZP_07901495.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315276090|gb|EFU39436.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/226 (29%), Positives = 126/226 (55%), Gaps = 12/226 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++D+ +++ ++ L+ E + V G++ +E + + D ++LD+ + + G++ Sbjct: 3 KVLVVDDEVSISSAVAYALRREGYTVETAGDGQEALERVESFHPDVMVLDVMMPRLSGYD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R L + + +L+ I DKV GL+ GADDY++KPF+ E++AR++A+ RRSR Sbjct: 63 VCRKLE-NRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRT 121 Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 Q+ I L +NL +TV +G + LT KE+ +I LL+ ++E Sbjct: 122 VENVQQPASPQNEIRISGLVINLLNRTVHAEGKLLELTPKEFDLIALLARNPERVYSREA 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++D + +D+ + +LRKKL + + I+TV+G GY Sbjct: 182 LLEQVWDMDFAGGTRTVDIHVQRLRKKLGDL---HDVIQTVYGIGY 224 >gi|291005149|ref|ZP_06563122.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 225 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 9/223 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+LL+EDD L + +L L+ ++V G G E + +LD+ L ++ G E Sbjct: 6 RLLLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADAPQVAVLDVMLPNLDGIE 65 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 + R +R PV +LS + D V+GL++GADDY+ KPF+ LVARIR++VRR R Sbjct: 66 LCRRIRGCS-HVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRRLRR 124 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A ++ GDL V+LD+ V G + LT E +++ + + LT+ L + Sbjct: 125 EPAPASAVRTFGDLEVDLDSLEVRRAGRSVPLTPTELRLVLEFAAQPGVVLTRSALLERV 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +D + +++DV + +LR K+ G+ +ETV G GY L Sbjct: 185 WDYAWGGDTRVVDVHVQRLRAKI-----GRERVETVRGFGYKL 222 >gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 235 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 17/231 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+++LA + +L+ E F + G +E + D ++LDL L + G EV Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSGTEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++R RGH Sbjct: 64 CKQLRTTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR--RGH 120 Query: 123 --------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168 + L+ G + ++++ TV V G + + KE+ ++E L Sbjct: 121 DSGAGADTEAEEEVTEQLLEGGRVKMDVERHTVTVAGEPVSMPLKEFDLLEYLLRNAGRV 180 Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 LT+ ++ ++ + K +DV + +LR K+ ++ TV G GY Sbjct: 181 LTRGQLIDRIWGADYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGY 231 >gi|146282793|ref|YP_001172946.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] gi|145570998|gb|ABP80104.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] Length = 225 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 15/226 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLI+DD+ L + L E F + G+ + Y+ A++LD+ L D G E+ Sbjct: 4 LLLIDDDQELCELLISWLAQEGFVAHACHDGQSAKQALAQYQPAAVVLDVMLPDGSGLEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121 L+ LR PV +LSG D++ GL+ GADDY++KP + EL AR+RA++RRS+ Sbjct: 64 LKQLRSEHPDLPVLMLSGRGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRSQPA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH---- 177 A S + GDLS + V GH + LT E +++E L + + K+ H Sbjct: 124 AAPSQLELGDLSYSPARGVASVGGHDVSLTLSEGRILEALLAQAGEPIDKQALAQHALGR 183 Query: 178 ---LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 LYD + +D+ + LR+KL A G I + RGY+ Sbjct: 184 KLTLYD-------RSLDMHVSNLRRKLGPHADGSPRIVALRSRGYL 222 >gi|317509412|ref|ZP_07967031.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316252335|gb|EFV11786.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 239 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 114/215 (53%), Gaps = 8/215 (3%) Query: 15 SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74 S++ L+ F+V D G + DA+ILD+ + + G V+ ALR P Sbjct: 23 SLQRGLRLSGFSVVTADNGAAALSAVHQQHPDALILDMNMPGLDGVSVVTALRAMGDDIP 82 Query: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS-------LI 127 +C+LS SS+ D++ GL++GADDY++KPF ELVAR++A++RR + +I Sbjct: 83 ICVLSARSSVGDRIEGLEAGADDYLTKPFVLGELVARVKALLRRPSTTNRPAPTVEFGVI 142 Query: 128 VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV 187 LSV++ + V V + LT +E++++ L+ L++ L ++ + Sbjct: 143 HVDYLSVDIPGRRVTVDDEPVELTKREFELLAALAENTGVVLSRTELLERVWGYDFAADT 202 Query: 188 KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 ++DVF+ LRKKL G I TV G G+VLR Sbjct: 203 NVVDVFVGYLRKKL-ELKGRHRLIHTVRGYGFVLR 236 >gi|326773027|ref|ZP_08232311.1| transcriptional regulatory protein CutR [Actinomyces viscosus C505] gi|326637659|gb|EGE38561.1| transcriptional regulatory protein CutR [Actinomyces viscosus C505] Length = 219 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/219 (33%), Positives = 117/219 (53%), Gaps = 4/219 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED++ LA +I L+ E V V G +E ++D I+LD L + G Sbjct: 1 MRVLVVEDEEYLAEAIATGLRREAMAVDVVGDGASALEQVAVNDYDIIVLDRDLPVVHGD 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R + ST V +L+ +++ +V G + GADDY++KPF ELVAR+RA+ RRS+ Sbjct: 61 EVCRRVVRDHPSTRVLMLTASRTLDARVGGFELGADDYLTKPFEFPELVARLRALGRRSQ 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + ++ + V GH IHL+ KE+ ++++L + L+ E L +D Sbjct: 121 PARTPVLEAHGVRLDPFRREVYRDGHFIHLSPKEFAVLQVLMEAEGGVLSAETLLEKAWD 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +P V I LR+KL G I+TV G GY Sbjct: 181 ANADPFTNSTRVTISHLRRKL----GEPRVIQTVPGAGY 215 >gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] Length = 228 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +I +EDD A+ +++ L E + V G+EL + FD ++LD+ L D G+E Sbjct: 3 KICCVEDDSAILTALQYTLSQEGYEVMTAMTKTQGLELIQQESFDLVLLDVTLPDGSGYE 62 Query: 62 VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 + + +R PV L+ + V GL GADDYI+KPF EL++R+ +++RR+ Sbjct: 63 ICKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNSVLRRA 122 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A++ I DLS+N A V + LTG EY+++ +L+ +N +T++ + Sbjct: 123 GKKQAETTINYQDLSINTIAARVFKNNQEVFLTGMEYRLLLILATHRNQVMTRDQLFEAI 182 Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +D G + + V+I +LR+KL + I T+ G GY L E Sbjct: 183 WDLGGEYVNDNTLTVYIKRLREKLEDDPAHPQLIRTIRGLGYKLGE 228 >gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 123/226 (54%), Gaps = 10/226 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59 M+IL+++D+ ++ + I + L+ E + V G + +E ++ E D +ILD+ L D G Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 59 YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118 Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 + +I G++++ + V V G + LT +E+ + +L ++ L Sbjct: 119 NKKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 178 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + +D+ + +LRKKL ++ YI+T++G GY L Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGSSG---EYIKTIYGVGYKL 221 >gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125] gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125] Length = 229 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 12/223 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ L + L+ E F VY + G++ I+ + D ++LD+ + ++ GF Sbjct: 7 ILIVDDELDLRELVTSYLRKEGFAVYTAETGDEAIKRLEQEPMDLVVLDVMMDEMDGFTA 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R A P+ +L+ +DKV GLQ GADDYI KPF+ ELVARI +RR++G Sbjct: 67 CKEIR-AFSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVALRRTQG- 124 Query: 123 AQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q + TG +L + + V V G I LT KEY ++ L + T+E + L Sbjct: 125 IQQVDDTGYRFNELRIQPSGRKVFVNGQEISLTKKEYDLLVFLLEHRGRVFTREHLHDRL 184 Query: 179 YDGRDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + G D + ++ +D I LR KL A +I+TVWG GY Sbjct: 185 W-GMDTQQGTLRTVDTHIKTLRLKLKPA---DRFIKTVWGVGY 223 >gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. CB0205] Length = 253 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 13/234 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL+ +D++ + +E L V + + G +E + E D ++LD+ + ++ GF Sbjct: 10 LKILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASEPDVVVLDVMMPELDGF 69 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 V +R A+ P+ +L+ + + D++ GLQ GADDY+ KPF+ +EL ARIR ++RR Sbjct: 70 AVTERIR-AQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRVS 128 Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 G ++V GDLS++ + + RI LTG E+ ++ELL R ++ Sbjct: 129 SVQANGVAGPGRTSHVVVVGDLSIDFNKRQAHRGDERIRLTGMEFNLLELLLSRSGEPIS 188 Query: 171 KEMFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + L ++ + E + +++DV I +LR KL + I T G GY+ + Sbjct: 189 RLDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEDDPENPELILTARGLGYMFQ 242 >gi|304440456|ref|ZP_07400345.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371208|gb|EFM24825.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 233 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 130/232 (56%), Gaps = 11/232 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ EDDK + I L L+ EN+ V+ + GE +E+ D II+DL + ++ G + Sbjct: 6 ILVAEDDKEIRDLIGLYLERENYRVFYAEDGEKCLEIFDREHIDLIIMDLMMPNVSGEDA 65 Query: 63 LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + LR+ + S P+ ILS S +K+ GL GADDY++KPFN EL+AR+ + +RR++ Sbjct: 66 I--LRIRENSYVPIIILSAKSQEFEKIIGLNIGADDYMTKPFNPSELMARVASQLRRTKK 123 Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + + S++ G+L ++ + KT+ + +I LT EY ++E + N + + + Sbjct: 124 YVKESASIVEIGNLKLDKNQKTIFLNNKKIDLTNIEYLILEFMMSNPNVVFSIDKIYEEV 183 Query: 179 YDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228 + +EP + K + V I ++R+K+ Y++ WG GY+ + K++ Sbjct: 184 W---NEPAIDPKTVTVHIRRIREKIEADPQNPIYLKVKWGMGYIFVDPRKND 232 >gi|300715798|ref|YP_003740601.1| two component transcriptional regulator, winged helix family [Erwinia billingiae Eb661] gi|299061634|emb|CAX58749.1| Two component transcriptional regulator, winged helix family [Erwinia billingiae Eb661] Length = 222 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 11/229 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD + ++ LK + V G + I +D ++LDL L GF Sbjct: 1 MRILLVEDDAIMGEAVVEALKEARYAVDWLRSGTEAIATLAIPRYDLVLLDLRLPGNDGF 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 V+ +LR P+ I++ ++ED++RGL +GADD++ PF+ +ARIRA++RR Sbjct: 61 SVISSLRDKGNMLPLLIITARDALEDRLRGLDAGADDFVIAPFDMTAWLARIRAVMRRKE 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEV----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 GH ++ G + LD + E +G L+ +E+ +++ L +R T L++ Sbjct: 121 GHCGPVLSNG--IIRLDPASHEACDVEKGEVYRLSNREFALLQALLIRPGTLLSRSELEE 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +Y +E E ++ FI LRKK G I+ V G G+ + NA Sbjct: 179 KIYGWGEEIESNAVEFFIHALRKKF-----GSKAIKNVRGVGWKVSGNA 222 >gi|256851855|ref|ZP_05557243.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260661884|ref|ZP_05862794.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|282931967|ref|ZP_06337431.1| regulatory protein VanR [Lactobacillus jensenii 208-1] gi|297205479|ref|ZP_06922875.1| response regulator [Lactobacillus jensenii JV-V16] gi|256615813|gb|EEU21002.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260547353|gb|EEX23333.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|281303909|gb|EFA96047.1| regulatory protein VanR [Lactobacillus jensenii 208-1] gi|297150057|gb|EFH30354.1| response regulator [Lactobacillus jensenii JV-V16] Length = 228 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+I++++DDK + + + LK+E + G++ + ++ + +ILD+ + + G Sbjct: 1 MKIIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPQMTG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ LR P+ ++S + DK++GL +GADDY+ KPFN E++AR+R+++RRS Sbjct: 61 IDVIKELR-KDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + S ++ G L +N D+ V+ + G+ I LT E+ ++ LL+ N + + Sbjct: 120 QKKVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ I+TVWG GY Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGY 224 >gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41] gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 9/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+++D+K +A IEL LK+EN+NV+ ++ + + D ILD+ + +I GF Sbjct: 13 LNILVVDDEKEIADLIELYLKNENYNVFKYYSAQEALACIEREGLDLAILDIMMPEIDGF 72 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 +L+ +R + PV +L+ DK+ G GADDYI+KPF ELVAR++A +RR Sbjct: 73 TILQKIR-ETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRRFT 131 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 S+ H ++ G L +N + + V + ++ LT E+ ++ LS + ++ E Sbjct: 132 LYNQSSKPHEDTIDFAG-LMINKNTRQVLLNERQLSLTPTEFSILWYLSSNRGKVISSEE 190 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + + V I LR+K+ ++ +I+TVWG GY + Sbjct: 191 LFQEIWGEKYFNSNNTVMVHIRHLREKMRDSVENPKFIKTVWGVGYTI 238 >gi|49081882|gb|AAT50341.1| PA2479 [synthetic construct] Length = 227 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD +A I L ++ V D L + FD ++LDLGL D G Sbjct: 1 MHVLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV +L+ ++ D+V GLQ+GADDY+ KPF+ EL AR+ + RRS Sbjct: 61 RLLQRLRQQGVDLPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHTLQRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++I G LS + + + G + L+ +E +++ L + L+ E + +Y Sbjct: 121 GRCVNVIEHGRLSYDPSTRETWLDGRPVELSRREQALLQALLNNRGRILSGEQLKDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL NA ++TV G GY L Sbjct: 181 FGDEVESNALNVHIHHLRRKLGNA-----IVQTVRGLGYRL 216 >gi|162139597|ref|YP_216033.2| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714084|gb|EFZ05655.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 226 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ILLIED++ + L + V Y D G DG+ L + IILD+ L + G Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++VLRALR A S +C L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 60 WQVLRALRTAHQSPAIC-LTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L + G L ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 119 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 219 >gi|227890323|ref|ZP_04008128.1| two component response regulator [Lactobacillus johnsonii ATCC 33200] gi|227849137|gb|EEJ59223.1| two component response regulator [Lactobacillus johnsonii ATCC 33200] Length = 221 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 117/203 (57%), Gaps = 1/203 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILL ED++ L+ + ++S N+ V G D +EL + +D IILD+ + + G Sbjct: 1 MKILLAEDEEQLSRVLVAAMQSVNYEVDPVFNGRDAVELARKNSYDVIILDIMMPVMDGI 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L+ +R + T V +L+ + ++D+V GL SGADDY++KPF+ +EL+AR+R+ RR Sbjct: 61 TALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRSKERRDD 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + + GDL++N+ A+ V + I L KE Q++ L L + + L H++ Sbjct: 121 QYTPNEVEVGDLALNV-AEQELVSHNSIRLGSKETQLLNYLMLNEGKEFSTSDLLAHVWK 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203 DE ++ ++I LR+KL + Sbjct: 180 DDDETSEDVVWIYISYLRQKLQS 202 >gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 15/229 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LL+ED+ L +I L+ E + V + G+ +EL + D ++LD+ L +I G EV Sbjct: 4 VLLVEDESTLLTTIAYNLRREGYKVLTAENGKRALELAE-ENPDIVVLDILLPEIDGLEV 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 R LR + S P+ +L+ + D++ GL+ GADDY++KPF+ EL+ARI+A++RR Sbjct: 63 CRRLR-QRSSVPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALLRRRSLI 121 Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171 + + +V+GDL ++ V+ G I LT +E+ ++ L + K + Sbjct: 122 MAEISSQQQESRRQKLVSGDLEIDPAMHQVKRGGKVIQLTPREFDLLTFLVMNKGIVFSA 181 Query: 172 EMFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E L ++ G DE +V+ + V I LR+K+ + IETV G GY Sbjct: 182 ERLLEEVW-GYDEALDVRTVPVHIRNLREKIEDDPSDPKRIETVRGVGY 229 >gi|209549806|ref|YP_002281723.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535562|gb|ACI55497.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 1/223 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED++ LA ++ L T D +EL + +DAI+LD L D G Sbjct: 1 MRILLIEDERELAKALSAALGKHGIVTDHTMHLADAVELTRQNLYDAILLDRRLPDGEGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + LR TP+ +L+ ++ +++V GL G+DDY+ KPF EEL+AR+RA++RR Sbjct: 61 SFIPQLRRTGKDTPIIVLTALNEPKERVEGLDLGSDDYLGKPFLVEELMARLRAVLRRPP 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A+ I G + ++ +V V + L +E ++ L+ RK T+ + +Y+ Sbjct: 121 NLAELKITAGRMVIDPLHLSVTVDDAPLDLPRRELLVLAALAKRKEKTVLRATLEAAVYN 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 +E + +D I +LR++L+ AG + I + G GY+L+E Sbjct: 181 YEEEIQSNALDAHISRLRRRLAE-AGAEVSIHNIRGVGYLLKE 222 >gi|78186515|ref|YP_374558.1| two component transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166417|gb|ABB23515.1| two component transcriptional regulator, winged helix family [Chlorobium luteolum DSM 273] Length = 236 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 8/228 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++EDD+ LA + L+ + ++ GED E F+ I+LD+ L I GF+V Sbjct: 6 ILVVEDDRNLAKLVGYNLEKAGYKCQFSENGEDAFEQLSMRSFELILLDIMLPGIDGFDV 65 Query: 63 LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R +R +I P+ +L+ DK+ G + G DDY+ KPF+ EL RIRA+++R R Sbjct: 66 CRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKRDR 125 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 G + + +G L V++ V + G + LT E++++ L RK ++EM L+ Sbjct: 126 RQGGVFRDALRSGGLDVDISRHAVTLDGRELVLTLMEFKLLVALLKRKGQAQSREMLLSD 185 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 ++D + ID + +LR+KL G K I+TV G GY E+ Sbjct: 186 VWDVDRTINTRTIDTHVTRLREKLGT-VGAK--IKTVRGLGYKFEEDG 230 >gi|325264690|ref|ZP_08131419.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029982|gb|EGB91268.1| DNA-binding response regulator [Clostridium sp. D5] Length = 224 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 I++I+DD ++ + +E +L E V G + + + D I+LDL L + G EV Sbjct: 7 IMIIDDDVSIGNMLEEVLIREGCRVSRAYSGTEALLFLESNRPDLILLDLMLPGLNGEEV 66 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 L ++ PV ++S + + DKV L GA DYI+KPF+ +EL+ARI +R + G Sbjct: 67 LPEIK----GIPVIVISAKAEVSDKVELLLGGAADYITKPFDIQELLARIAVQLRNASGA 122 Query: 123 AQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q ++ +L+++L A TV V G +HLT E+ +++LL + + K + L + + Sbjct: 123 GQPPVLNWEELTMDLAAHTVSVGGREVHLTKTEFAILKLLMQNPSQVIPKSVMLERISED 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + + V I LR+KL + AG K+YIE VWG G+ L+E Sbjct: 183 TPDCVESSLKVHISNLRRKLRD-AGEKDYIEAVWGIGFKLKE 223 >gi|313107372|ref|ZP_07793563.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|310880065|gb|EFQ38659.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 226 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD +A I L ++ V D L + FD ++LDLGL D G Sbjct: 1 MHVLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV +L+ ++ D+V GLQ+GADDY+ KPF+ EL AR+ + RRS Sbjct: 61 RLLQRLRQQGVDLPVLVLTARDAVTDRVAGLQTGADDYLLKPFDLRELGARLHTLQRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++I G LS + + + G + L+ +E +++ L + L+ E + +Y Sbjct: 121 GRCVNVIEHGRLSYDPSTRETWLDGRPVELSRREQALLQALLNNRGRILSGEQLKDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL NA ++TV G GY L Sbjct: 181 FGDEVESNALNVHIHHLRRKLGNA-----IVQTVRGLGYRL 216 >gi|297622472|ref|YP_003703906.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297163652|gb|ADI13363.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 253 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 12/228 (5%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED++A+A + L+ E + V G G+E + D +ILD+ L + GF++ Sbjct: 19 ILIVEDERAIAEVVADNLRDEGYRTLVASDGPSGLERWRAERPDLVILDVMLPQLSGFDL 78 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 R R +TPV LS ED+V GL++G DDY+ KPF+ E + R+ ++RR RG Sbjct: 79 CRTRRTEGDATPVLFLSAKGHPEDRVAGLRAGGDDYLPKPFHLPEFLLRVENLLRR-RGW 137 Query: 122 ---HAQSLIVT------GDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTK 171 H S + G +V+ + T + R L+ +E ++++LLS R+ +++ Sbjct: 138 GGEHGASAAASDTALRFGGHTVDFRSWTASLADGRTELLSERELKILQLLSSRRGEVVSR 197 Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + L+ ++ P + +D F+ +LR+ Y TVWG GY Sbjct: 198 DDILDAVWGDDAFPSSRTVDNFVVRLRRLFEPDPARPIYFHTVWGVGY 245 >gi|328958774|ref|YP_004376160.1| regulatory protein VanR [Carnobacterium sp. 17-4] gi|328675098|gb|AEB31144.1| regulatory protein VanR [Carnobacterium sp. 17-4] Length = 229 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 128/229 (55%), Gaps = 7/229 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + +++E + V G++ + K D ++LD+ + ++ G Sbjct: 1 MKILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMDG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R ++ P+ +LS ++ DK++GL +GADDY++KPFN E++ARI++++RRS Sbjct: 61 NQVVKEVR-KEMQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRS 119 Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 Q+ + G L + ++ V + G I LT E+ ++ LL+ N + + Sbjct: 120 NYMTNSQEQNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ K + V + LR K+ A GG+ I+TVWG GY + E Sbjct: 180 FERVWQQESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKIGE 228 >gi|325122777|gb|ADY82300.1| two component heavy metal response transcriptional regulator, winged helix family [Acinetobacter calcoaceticus PHEA-2] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 122/219 (55%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL+IED+ +A + LK + LG G+E+ K ++D +ILD+ L DI G+ Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL+ LR PV L+ + D+V+GL+ GADDY++KPF+ EL+ARI++++RR + Sbjct: 61 SVLQVLRQFS-RIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ + DL +++ V G+ I L+ E+ ++ L L K +T+ + +++ Sbjct: 120 YLQENELSISDLKMDVVGHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWN 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + IDV + +LR K+ K I T+ G GY Sbjct: 180 INFDTDTNFIDVAVRRLRSKIDEGYELK-LIHTIRGLGY 217 >gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 238 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 10/229 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++D++ + +++ L+ E + + + GE + ++ +ILD+ L + G E Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V LR K STP+ +L+ ++V+G + GADDY+ KPF+ E++ R++AI+RRS Sbjct: 67 VCTRLRQVK-STPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125 Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A + IV L + DA V GH I LT KEY+++ L+ + ++E Sbjct: 126 TAYLSKETNPSNSIVFPHLVIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221 L +++ +++ +D + +LR+KL+ ++ I TVWG GY L Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSSDSAAMITTVWGVGYKL 234 >gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20] gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 226 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 129/227 (56%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIP 58 RIL+++DD +LA I +ML+SE+ Y L DG + L F+E D ++LDL L + Sbjct: 4 RILVVDDDASLAEMIGIMLESES---YTPTLCHDGAKALDAFHEVNPDLVLLDLMLPGLD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E+ R +R ++ P+ +L+ + +D V GL++GADDY++KPF +EL+AR+ +RR Sbjct: 61 GVEICRLIR-SESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRR 119 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A + GDL +++ V+ I LT E++++ L+ T+E L+ + Sbjct: 120 TNPGAAEHVRAGDLDIDVAGHQVKRGESVISLTPLEFELLVTLARSPWKVFTREELLSQV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + ++++V + +LR K+ + + TV G GY + E+A Sbjct: 180 WGYQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRVGESA 226 >gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725] gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725] Length = 228 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 4/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IED+K + ++L L+ E ++V GE+GIE K +D I+LDL + G EV Sbjct: 4 ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGIEKFKNNFYDIILLDLMMPKFSGEEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R + P+ +L+ +KV L GADDY++KPF EEL ARIR +R Sbjct: 64 CKIIRKTS-NIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSNF 122 Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + D L ++L ++ I LT EY + L L K +++E LN ++ Sbjct: 123 TNTDYIHYDILKLDLKTNSLYKNEKEISLTKTEYNLFHYLLLNKELVVSREKILNEVWGY 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 E KI+DV+I LRKK+ +I TV G GYVL++ Sbjct: 183 DYMGEEKIVDVYINALRKKIDYDEN--KFIHTVRGFGYVLKK 222 >gi|237718181|ref|ZP_04548662.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|260174609|ref|ZP_05761021.1| two-component system response regulator [Bacteroides sp. D2] gi|293371072|ref|ZP_06617612.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|315922873|ref|ZP_07919113.1| two-component system response regulator [Bacteroides sp. D2] gi|229452602|gb|EEO58393.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|292633841|gb|EFF52390.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|313696748|gb|EFS33583.1| two-component system response regulator [Bacteroides sp. D2] Length = 224 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 2/221 (0%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+ +A IE LK +V V G+ G ++ + FD +ILD+ + I G E Sbjct: 3 KILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDEPFDLLILDIIMPKINGLE 62 Query: 62 VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + R R + PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++ Sbjct: 63 LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 122 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L+ +L ++ + + + I LT KEY+++E + L++ L ++D Sbjct: 123 EVPSNLLTCDNLVLDCNTRKAKRGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + I+DV++ LR K+ K I TV G GY++ Sbjct: 183 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 222 >gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 237 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 8/235 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ + + L+ E + VY G +G ++ Y+ D IILDL + G+E Sbjct: 4 RILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVFHQYQPDLIILDLMMPKKDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + +R + + P+ +L+ D++ GL GADDY++KPF+ ELV R++ I+RR Sbjct: 64 LCEEIR-QQSNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ +I DL + + V V +++ LT KE++++ +++ ++ Sbjct: 123 IPIQAKESLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAQHPKQVFSRSQL 182 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++D E + V + +LR KL +I TVWG GY N +ET Sbjct: 183 LELIWDFEHEGGTNTVTVLVSRLRDKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237 >gi|226349472|ref|YP_002776586.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226245387|dbj|BAH55734.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 253 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 13/230 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R L+++D++ LA + L+ E+F V V G D + L + + D ++LDLGL + G E Sbjct: 19 RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALTLAREIDPDVVVLDLGLPGMDGIE 78 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120 V R LR + V +L+ S+ D + GL GADDY++KPF+ ELVARIRA++RR R Sbjct: 79 VCRELRTFSDAY-VVMLTARSAEMDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRK 137 Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169 G V G L +++ + V + + LT E+ ++ +LS R Sbjct: 138 APVYEIPAPEPGAEAPPRVFGALRIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAF 197 Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + ++ ++DV + LR+KL + Y+ TV G GY Sbjct: 198 SRRQLIEAVWGESWVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGY 247 >gi|254500884|ref|ZP_05113035.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222436955|gb|EEE43634.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 222 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 112/205 (54%), Gaps = 4/205 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRI L+ED+ LA I L+ +V V G+D + D +ILD+ L G Sbjct: 1 MRIALVEDNVNLAKGIAYQLRDAGHSVDVLHHGDDADTFLRQETGDLVILDINLPGKSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L LR PV +L+ S +D+V+GL +GADDY+ KPF EEL ARIRA+ RR+ Sbjct: 61 DLLADLRERSDPRPVILLTARSETQDRVKGLDAGADDYLVKPFEMEELAARIRALGRRNT 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHL--TGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + SL+ G L DA ++++ + L +E ++ L TL+K L+ L Sbjct: 121 AVSPSLVNVGPL--KFDAGSMQLFDGDVALEVPRRELSLLSALIQANGRTLSKASLLDQL 178 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSN 203 Y E + K+I+V++ +LRK+LS+ Sbjct: 179 YGAGSETDEKVIEVYVSRLRKRLSS 203 >gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 248 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ILLIED++ + L + V Y D G DG+ L + IILD+ L + G Sbjct: 23 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 81 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++VLRALR A S +C L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 82 WQVLRALRTAHQSPAIC-LTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 140 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L + G L ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 141 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 199 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 200 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 241 >gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 226 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ILLIED++ + L + V Y D G DG+ L + IILD+ L + G Sbjct: 1 MKILLIEDNQKTIEWVRQGLTEAGYMVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++VLRALR A +PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 60 WQVLRALRTAH-QSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L + G L ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 119 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 219 >gi|121602059|ref|YP_988753.1| DNA-binding response regulator [Bartonella bacilliformis KC583] gi|120614236|gb|ABM44837.1| DNA-binding response regulator [Bartonella bacilliformis KC583] Length = 228 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ +E + G+ G L + +D +I+D L G Sbjct: 1 MKILIIEDDRETGRYLEKAFLEAGHAADIACDGDTGYALAETERYDVMIIDRMLPHRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR TPV ILS + ++D+V GL++G DDY++KP+ EL+AR+ + RR Sbjct: 61 SIISELRAKGNETPVLILSALGQVDDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ + TV+ I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGDLELDRLSHTVKRGEMNITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ K++ + TV G GY+L+ K Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDIPLLHTVRGAGYMLKAPDK 226 >gi|295705037|ref|YP_003598112.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] gi|294802696|gb|ADF39762.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] Length = 230 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 7/222 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K++A ++ K E + V GE+ +E K ++ D +ILD+ + + G+E Sbjct: 4 KILVVDDEKSIATAVSYAFKREGYIVETASDGEEALEKVKSFQPDVMILDVMMPKLTGYE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R L + + +L+ + I DKV GL+ GADDY++KPF+ ELVAR +A+VRR Sbjct: 64 VCRKLENRR-GMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122 Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + A I G + VNL +T+ V + LT KE+ +I LL T+E L+ Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANELVKLTPKEFDLIALLLANLERVYTREDLLDL 182 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + +D+ + +LRKK+ A ++TV+G GY Sbjct: 183 VWGMDYAGGTRTVDIHMQRLRKKVGEAE--PYLLQTVYGVGY 222 >gi|91783509|ref|YP_558715.1| osmolarity response regulator [Burkholderia xenovorans LB400] gi|170692385|ref|ZP_02883548.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|187923869|ref|YP_001895511.1| osmolarity response regulator [Burkholderia phytofirmans PsJN] gi|209520706|ref|ZP_03269456.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|295676509|ref|YP_003605033.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|296157818|ref|ZP_06840652.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|307729628|ref|YP_003906852.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|323526056|ref|YP_004228209.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|91687463|gb|ABE30663.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] gi|170142815|gb|EDT10980.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|187715063|gb|ACD16287.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|209498868|gb|EDZ98973.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|295436352|gb|ADG15522.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295892064|gb|EFG71848.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|307584163|gb|ADN57561.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] gi|323383058|gb|ADX55149.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 244 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 110/209 (52%), Gaps = 12/209 (5%) Query: 23 ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82 + FNVYV + +L FD ++LDL L G + R LR + TP+ +L+ Sbjct: 32 QGFNVYVAENAPSMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAKG 91 Query: 83 SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLSV 134 D++ GL+ GADDY+ KPFN ELVARI A++RR + + G+ ++ Sbjct: 92 EDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQSPSELPGAPSETTEVFEFGEFAL 151 Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KIIDV 192 NL +T+ G I LT E+ ++++ + L++E + L GR E EV + +DV Sbjct: 152 NLATRTLTKAGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRSLDV 209 Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVL 221 I +LRK + G +I+TVWG GYV Sbjct: 210 QISRLRKLIEPDPGSPRFIQTVWGLGYVF 238 >gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58 M+IL+++D+ ++ + I + L+ E + V DG E+ + + D +ILD+ L D Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLT---AADGREVLERWNEGPDVLILDVMLPDTD 57 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G+E+LR R PV +L+ S + DK+ GLQ GADDY++KPFN EL+ R++ + RR Sbjct: 58 GYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117 Query: 119 SRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + +I G++++ + V V I LT +E+ + +L ++ Sbjct: 118 VKKKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDEL 177 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++ + +D+ + +LRKKL N+ YI+T++G GY L Sbjct: 178 LEKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221 >gi|325123756|gb|ADY83279.1| osmolarity response regulator [Acinetobacter calcoaceticus PHEA-2] Length = 230 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 9/225 (4%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 +++DD L ++ L+ + F V L + F I+LD L G + R Sbjct: 1 MVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLSICR 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR------ 118 LR + I TP+ +L+ S D++ GL++GADDY+ KPFN EL+ARIRA++RR Sbjct: 61 RLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVREVP 120 Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ G S++L +T+ +G + LT E+ +++ L LT++ +N Sbjct: 121 GAPSQQVEVVSFGPWSLDLSTRTLTREGQIVTLTTGEFAVLKALVQHPREPLTRDKLMN- 179 Query: 178 LYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L GR+ + + IDV + +LR+ + + YI+TVWG GYV Sbjct: 180 LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVF 224 >gi|295090361|emb|CBK76468.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 229 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAIILDLGLTDIP 58 ++ILL+EDD L SI+ L ++V + GE + L Y +D I+D L I Sbjct: 2 IKILLMEDDLDLCQSIQQELMKNGYSVDCCNDGEIAMLYALNTDYGYDLAIVDRMLPVID 61 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G +++A+R I PV I++GMS+++D+V GL GADDY+ KPF+ EL+AR+RA+ RR Sbjct: 62 GLTIIKAMRRKNIQIPVIIITGMSALDDRVDGLDGGADDYLVKPFHIRELMARVRALTRR 121 Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 + ++ ++ DL ++ + + G + LT +E +++ +L + T ++E + Sbjct: 122 PQQIQETEALSYADLHLDYPNRKIVCNGQDLVLTAREAELLSVLMKQPKTAFSREQLVLK 181 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++ + E +D +I LRK+L I+T++G GY L ++ Sbjct: 182 VWGSNADIEPGNVDNYISFLRKRLRELHSSCE-IKTIYGAGYRLEKS 227 >gi|300692435|ref|YP_003753430.1| response regulator, cheY family [Ralstonia solanacearum PSI07] gi|299079495|emb|CBJ52171.1| putative response regulator, CheY family [Ralstonia solanacearum PSI07] Length = 232 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL+ EDD LA + L+ + V G +D +ILD+GL + Sbjct: 1 MRILIAEDDATLADGLTRSLRQAGYAVDQAADGAAADAALSAQTAQTYDLLILDVGLPRL 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL+ LR PV IL+ S++++V+GL GADDY++KPF EL AR+RA+VR Sbjct: 61 SGLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +L+ G L+ + + ++ + L+ +E ++E+L R ++KE ++H Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIRDQVVDLSAREIGLLEILLSRAGRLVSKEQLVDH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L +E I+V++ +LRKK+ I TV G GY L Sbjct: 181 LCGWGEEVSNNAIEVYVHRLRKKIEVDG---IRIATVRGLGYCL 221 >gi|307245489|ref|ZP_07527576.1| Transcriptional regulatory protein cpxR [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853548|gb|EFM85766.1| Transcriptional regulatory protein cpxR [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 242 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 18/237 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++DD L + +L E F ++ G+D + + +D I+LD+ + + G E Sbjct: 3 RILLVDDDIELTELLAELLSLEGFEIHCVHNGQDALTELELQSYDLILLDVMMPVLNGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR K STPV +LS D+V GL+ GADDY+ KPFN ELVARI+AI+RR+ Sbjct: 63 TLKQLR-QKHSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTTS 121 Query: 122 H--AQSLIVT---------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164 + + ++T GD+ ++ + +G + LTG E+ ++++L Sbjct: 122 NILSNPDVITYSNQSPKENSKQLSFGDVELHPGRQQAIFEGRDLDLTGTEFALLQMLMRN 181 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L++E+ + R P + ID+ I LRKKL + +T+ GRGY+L Sbjct: 182 PGQILSRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 238 >gi|213692629|ref|YP_002323215.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524090|gb|ACJ52837.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458780|dbj|BAJ69401.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 240 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 14/227 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ LA +I + +E + V G ++ D +I+D+ L + G E Sbjct: 15 VLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPVMDGLEA 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + + VA+ PV IL+ DKV GL +GADDY++KPF+ EL+AR +A++RR Sbjct: 75 TKRI-VAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L+ G + ++ + V V G ++HLT E+ ++ L+ R + LT+E Sbjct: 134 KVIAKNSENEKLLDFGSIVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++D D + +D + LR KL G + I TV G GY Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GADTIRTVHGVGYAF 235 >gi|223934896|ref|ZP_03626815.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223896349|gb|EEF62791.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 254 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+I+DD+ L I+ L+ + + + G +G E F A+ILD+ L + GFE Sbjct: 21 RLLVIDDDRKLCRLIKDYLEPMGYEIALAHTGPEGAEKAVSETFAAVILDVMLPGMDGFE 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 VL+ +R A + PV +L+ D++ GL+ GADDY+ K F+ EL+AR+RA+ RRS Sbjct: 81 VLKQIRRAS-NVPVLMLTARGDESDRIVGLEIGADDYLPKTFSTRELLARLRAVTRRSNQ 139 Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ IV DL VN ++T + + LT EY ++ L+ K ++E Sbjct: 140 TTKATETPDAQEIVIQDLRVNEGSRTAVLGDKPLDLTPVEYDLLASLARAKGRIKSREQL 199 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L+ + + + + IDV I LRKKL + +I TV GY+L A+ Sbjct: 200 LDEIAERNYDVFDRSIDVHISALRKKLGDDPKSPRFIRTVRTAGYMLMNPAE 251 >gi|312198458|ref|YP_004018519.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229794|gb|ADP82649.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 221 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 8/221 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ ++ I L L E F V V G G+ + A++LD+ L + G +V Sbjct: 1 MLVVEDEPHISDLIRLYLTREGFGVEVRQDGAAGLTAARELAPVALVLDVRLPGLDGRDV 60 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LRALR + TPV ++ D++ GL+ GADDY+ KPF+ ELVAR+RA++RR+ Sbjct: 61 LRALRAEENWTPVLFVTARDDEVDRILGLELGADDYLVKPFSPRELVARLRAVLRRAGPQ 120 Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A + G + ++LD + V G + LT E+ ++ L R T+E L+ + Sbjct: 121 AAQPATRTLRAGAVELDLDRRQVAAAGVPVALTATEFDLLAALLARPGLVYTRERLLSQV 180 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +DV + ++R KL G + I TV G GY Sbjct: 181 WGYHAAAGTRTVDVHVAQVRAKL----GDVSPIRTVRGVGY 217 >gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 224 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 131/223 (58%), Gaps = 7/223 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60 ++L+IED++ + ++ L++ + V V + G+ G+E + I+LD+ L DI G+ Sbjct: 3 KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ +R K PV +++ DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ Sbjct: 63 SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTY 121 Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G ++ T +S+N+ ++ V V G +I LT KE+ +++LL K +++E LN + Sbjct: 122 GASEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + +++ +D I +LR+KL + I+TVWG GY L Sbjct: 182 WGYDFYGDLRTVDTHIKQLREKLGEK---RKLIKTVWGIGYKL 221 >gi|219667712|ref|YP_002458147.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537972|gb|ACL19711.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 9/225 (4%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D++A+A +E+ LK+EN+N++ G+D ++ + D ILD+ L D+ GF + Sbjct: 5 ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAKEKLDLAILDVMLPDVDGFSI 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K + PV +L+ DK+ GL GADDYI+KPF EL+AR++A +RR + Sbjct: 65 CRQIR-EKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTKY 123 Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S +I L ++++ + ++ LT E+ ++ +L + ++ E Sbjct: 124 NSSEPNQEEHVIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEELF 183 Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 N ++ D + V I LR+K+ ++ YI+TVWG GY Sbjct: 184 NEVWGDKYFTNSNNTVMVHIRHLREKMQDSTEHPKYIKTVWGVGY 228 >gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM 13280] gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM 13280] Length = 250 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 12/237 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+KA+ ++ L+ E + V G+ +E + ++FD I+LDL L + G Sbjct: 18 KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGER 77 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDY+ KPF+ ELVAR+RA+ RR+ Sbjct: 78 VCRAIRDTS-DVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 136 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 + + GDL +++ + V+G + LT E++++ L+ + E Sbjct: 137 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 196 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231 L + ++G + + ID + LR KL + ++ TV G GY A+ + + Sbjct: 197 LGYDFEGYE----RTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAQSDKAD 249 >gi|57207865|dbj|BAD86532.1| hypothetical protein [Staphylococcus aureus] Length = 232 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 7/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL++EDD + + ++K + G + + + ++D ++LDL L I G Sbjct: 5 INILVVEDDNDINQMLCKIIKKSKYYAIPAYSGTEALLYLENKQWDLVLLDLMLPGISGK 64 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 EVL+ +R STPV I+S + + K+ L+ GADDYISKPF+ EE+ ARI A++R Sbjct: 65 EVLKQVR-EHSSTPVIIISAKNESQYKITSLRMGADDYISKPFDIEEVAARIDALLRRYQ 123 Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 R + + +V D+ +N+D++ V V + LT +E+++++LL +K Sbjct: 124 KSEREKNTSNQELVFLDIVLNIDSQKVIVNNFEVTLTLREFKILQLLMENPQKIYSKANL 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ + + ++V + LR KL+ YIET+WG GY L+ Sbjct: 184 FETVWEDKFHGDENTVNVHMSNLRNKLAQNNATDTYIETIWGIGYRLK 231 >gi|119715476|ref|YP_922441.1| response regulator receiver [Nocardioides sp. JS614] gi|119536137|gb|ABL80754.1| response regulator receiver [Nocardioides sp. JS614] Length = 234 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 126/228 (55%), Gaps = 4/228 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED++ +A + L+ E ++V D G+ ++ + +ILDLGL DI G E Sbjct: 8 RVLVVEDEEDIAFPLVRTLEREGYDVSWVDSGQKALDTMATAP-EVVILDLGLPDIDGLE 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 V R R A + I++ + D+V GL GADDY++KPF EL AR+RA++RR S Sbjct: 67 VCRRAREAGFEGAIMIVTARAGELDRVVGLDYGADDYLAKPFGLAELQARVRALLRRTSS 126 Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A + D L +++DA+ V + LTGKE++++ +L+ ++ +++ + ++ Sbjct: 127 GSATAEGAKPDGLRIDVDARRVYAGDEEVPLTGKEFEVLNILAANRDKVVSRGRLMADVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 D K +DV I +LR+KL + G + + V G G+ L D Sbjct: 187 DENWYGSTKTLDVTIGRLRQKLES-VGVTDRVVAVRGVGFRLEGGTPD 233 >gi|309789569|ref|ZP_07684150.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308228305|gb|EFO81952.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 229 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D + ++ L F V G + + + + D I+LD+ + + GF+ Sbjct: 6 ILVVDDHANVRALLKDYLSEHGFRVITAADGAEALAVAGREQPDLILLDVMMPKLDGFQF 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 ++ R + +TPV +L+ + DKV GL+ GADDY++KPF ELVAR+RA++RRS Sbjct: 66 MQTFR-KRHNTPVIMLTARIAESDKVVGLELGADDYVTKPFGMHELVARVRAVLRRSSPD 124 Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A +L+ GDL++N + V V + LT E+ ++ L ++E L L Sbjct: 125 ALNPDALLRVGDLTLNRATRVVRVGERDVSLTPSEFALLAALMEAPGRVFSREQLLERLQ 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E + IDV I LRKKL Y+ETV+G GY Sbjct: 185 GNDYEGVERTIDVHIRNLRKKLEPDPTQPRYVETVFGVGY 224 >gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 229 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+++LA + +L+ E F V G + + D ++LD+ L + G +V Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLPGMSGTDV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + LR AK S PV +++ S DKV GL+ GADDY++KP++ EL+ARIRA++RR + Sbjct: 64 CKQLR-AKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + ++ G + ++++ V V G + L KE+ ++E L LT+ ++ Sbjct: 123 EAATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + K +DV + +LR K+ G ++ TV G GY L E Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLEE 229 >gi|119899090|ref|YP_934303.1| two component system transcriptional regulatory protein [Azoarcus sp. BH72] gi|119671503|emb|CAL95416.1| two component system transcriptional regulatory protein [Azoarcus sp. BH72] Length = 226 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 3/219 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ + + L+ EN+ V+ D G+ + + D I+LDLGL D+ G EV Sbjct: 5 VLVVEDEPQIRRLVRNALEGENYRVFTVDSGKRSLIEAGTRKADLIVLDLGLPDLDGMEV 64 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LR +R PV ILS +DK+R L GADDY++KPF EL+AR+RA+VRR H Sbjct: 65 LRGIREWS-HVPVLILSARGEEDDKIRALDEGADDYLAKPFGVGELLARVRALVRRHVKH 123 Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 S + G++ + +TV G +HLT EY+++ +L+ LT + ++ Sbjct: 124 EDSSGRLNFGEVEADFVRRTVVRNGEAVHLTKIEYRLLTVLAANAGKVLTHNHLMREVWG 183 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +++ +LR+KL + T G GY Sbjct: 184 PAYVDSNHYLRIYVGRLRQKLEADPAQPLHFLTETGVGY 222 >gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1] gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 248 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 126/228 (55%), Gaps = 9/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+++DD L ++ L+ + F V G +L + F ++LDL L G Sbjct: 15 RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDGIA 74 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120 + + LR P+ +L+ S D++ GL++GADDY+ KPFN +EL+ARI+A++RR SR Sbjct: 75 ICKRLREENSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHSR 134 Query: 121 ----GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 +Q + V G +++L +T++ G+ + LT E+ +++ L LT++ Sbjct: 135 ELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 194 Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +N L GR+ + + IDV + +LR+ + + YI+TVWG GYV Sbjct: 195 MN-LARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 241 >gi|153212561|ref|ZP_01948308.1| transcriptional regulator CpxR [Vibrio cholerae 1587] gi|229521757|ref|ZP_04411175.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae TM 11079-80] gi|254225418|ref|ZP_04919029.1| transcriptional regulator CpxR [Vibrio cholerae V51] gi|297581527|ref|ZP_06943450.1| transcriptional regulator CpxR [Vibrio cholerae RC385] gi|124116432|gb|EAY35252.1| transcriptional regulator CpxR [Vibrio cholerae 1587] gi|125622052|gb|EAZ50375.1| transcriptional regulator CpxR [Vibrio cholerae V51] gi|229341351|gb|EEO06355.1| copper-sensing two-component system response regulator CpxR [Vibrio cholerae TM 11079-80] gi|297534365|gb|EFH73203.1| transcriptional regulator CpxR [Vibrio cholerae RC385] Length = 228 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD L + +L+ E F + + GE G+ E D I+LD+ + + G E Sbjct: 4 ILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVS-DEIDLILLDVMMPKLNGMET 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 L+ LR K +TPV +L+ D+V GL+ GADDY+ KPF+ EL+ARIRAI+RR++ Sbjct: 63 LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNG 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I D+ V + QG + LT E+ ++ TLTKEM + Sbjct: 122 LTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + ID+ + LRKKL GK I+T+ GRGY++ Sbjct: 182 LGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYLM 224 >gi|329851780|ref|ZP_08266461.1| response regulator [Asticcacaulis biprosthecum C19] gi|328839629|gb|EGF89202.1| response regulator [Asticcacaulis biprosthecum C19] Length = 219 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 6/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LLIEDD L ++ L + +V L + + +D I+LDLGL D G Sbjct: 1 MRLLLIEDDAMLGSAVRDGLTPHHAVDWVRTLADAALARSTT-AYDLILLDLGLPDGSGL 59 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 L LR + STPV IL+ ++ ++ GL SGADDY+ KPF+ +EL+AR RA++RR+ Sbjct: 60 AWLTQLRRSGDSTPVLILTARDAVGHRIEGLDSGADDYLVKPFDLDELIARCRALLRRAS 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 H V + + A+ + +HL+ +E + E L + ++K LYD Sbjct: 120 EHVALREVAPGVDYDPQARRILYHHQPVHLSAREMAVFERLVAARGGIVSKGQIEESLYD 179 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + ++V I +R KLS ++ I+TV G GY L Sbjct: 180 WSRDIDSNTVEVHISSIRHKLS-----RDVIQTVRGMGYRL 215 >gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 248 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59 M+ILLIED++ + L + V Y D G DG+ L + IILD+ L + G Sbjct: 23 MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 81 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++VLRALR A S PV L+ S+ED+V+GL++GA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 82 WQVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 140 Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 L + G L ++ ++V G I LT KE+ ++ LL+ R + + + ++ Sbjct: 141 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 199 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 + E +DV I +LR K+ + K I TV G GY L+ Sbjct: 200 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 241 >gi|268591078|ref|ZP_06125299.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] gi|291313885|gb|EFE54338.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILLIED ++ L+ F V VT+ G DG+ + +ILD+ L + G+ Sbjct: 1 MRILLIEDHLKTQVWVKNGLEEAGFLVDVTNDGRDGLYFALENSYQLVILDIMLPGMNGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+L+ LR AK + PV L+ +++D+++GL+ GA+DY+ KPF+ EL+AR++ ++ ++ Sbjct: 61 EILKILRTAK-NIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKINQ 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 A + I DL ++L VE G +I LT +E+ ++ L + L + + + ++ Sbjct: 120 -PASTTITIADLKIDLTRHDVERAGKKITLTRQEFSLLLFFVLHCDEILPRTLIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + IIDV I +LRKK+ + K IET+ G GY L Sbjct: 179 IDFESDTNIIDVAIRRLRKKIDDEFDVK-LIETIRGMGYRL 218 >gi|208779553|ref|ZP_03246898.1| response regulator receiver domain protein [Francisella novicida FTG] gi|208744514|gb|EDZ90813.1| response regulator receiver domain protein [Francisella novicida FTG] Length = 228 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL EDD L + L+ E V + GE + +D ++LD+ + G Sbjct: 1 MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDISMPIKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117 EVLR +R I P+ +L+ +ED+++GL GADDY++KPF +ELVARI+AI R Sbjct: 61 EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 RS I GD S N ++TV G I ++ KE ++ +L + K L Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +Y E + ++V + LRKK++ N+I+T+ G GY ++++ Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYFVQKD 224 >gi|170769433|ref|ZP_02903886.1| heavy metal response regulator [Escherichia albertii TW07627] gi|170121757|gb|EDS90688.1| heavy metal response regulator [Escherichia albertii TW07627] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 3/221 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ + L + + G DG+ L ++ IILD+ L + G+ Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++L+ LR AK TPV L+ S++D+VRGL SGA+DY+ KPF+ EL+AR+RA +R+ Sbjct: 61 QILQTLRTAK-KTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 +L ++G L ++ ++ V I LT KE+Q++ LL+ R + + + + ++ Sbjct: 120 ALNSTLEISG-LKMDSVSQNVSRDNVNITLTRKEFQLLWLLASRAGEIIPRTVIASEVWG 178 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 + + +DV I +LR K+ + K I T+ G GY L Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFNEK-LIATIRGMGYSL 218 >gi|251797128|ref|YP_003011859.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544754|gb|ACT01773.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 231 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 14/226 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL+IED++A+A + L E F + G DG+ + ++ D ++LD L D G + Sbjct: 5 RILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDRSGLD 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + + A+ + P+ +L+ S I DK+ GL+ GADDYI+KPF+ E+V RIR I+RR Sbjct: 65 ICKQV-TAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRLAQ 123 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + A S+I D+ V+ + V +G + LT KE+ ++ L + T+ Sbjct: 124 AQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRAEL 183 Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ G D P +++ +D I +LRKKL A + I TV+G GY Sbjct: 184 LESVW-GYDFPGDMRTVDTHIQRLRKKLDAA----DLITTVFGIGY 224 >gi|118444074|ref|YP_877404.1| two-component response regulator [Clostridium novyi NT] gi|118134530|gb|ABK61574.1| two-component response regulator [Clostridium novyi NT] Length = 227 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 9/223 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+++D+ ++ IE+ L+ EN+ V G D + + IILD L DI GF Sbjct: 1 MKILVVDDEISILQLIEMTLELENYEVMTAKTGLDALNILSKENIQLIILDAMLPDINGF 60 Query: 61 EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 ++ ++ IS P+ +L+ + I DK+ GLQ GADDYI+KPFN EL+ RI+ +R Sbjct: 61 NLIP--KIKNISDIPIIMLTAKNDINDKILGLQLGADDYITKPFNSTELILRIKIASKRV 118 Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 + + ++ I+ G L + + + + + LT KE++++ L K ++E L+ Sbjct: 119 KKDIVNEKNEIILGSLRILKKERKLIINSTEVTLTYKEFEVLSYLCENKEKVFSREELLS 178 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + +D+ I +LRKKL +NYI+T++ GY Sbjct: 179 KVWGYDFEGTTRAVDILIQRLRKKLGKC---QNYIKTLYKAGY 218 >gi|32035357|ref|ZP_00135346.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208111|ref|YP_001053336.1| transcriptional regulatory protein CpxR [Actinobacillus pleuropneumoniae L20] gi|126096903|gb|ABN73731.1| transcriptional regulatory protein CpxR [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 242 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 124/237 (52%), Gaps = 18/237 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++DD L + +L E F ++ G+D + + +D I+LD+ + + G E Sbjct: 3 RILLVDDDIELTELLAELLSLEGFEIHCVHNGQDALTELELQSYDLILLDVMMPVLNGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR K STPV +LS D+V GL+ GADDY+ KPFN ELVARI+AI+RR+ Sbjct: 63 TLKQLR-QKHSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTTS 121 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLR 164 + S +I + S ++K + G +H LTG E+ ++++L Sbjct: 122 NILSNPDVITYSNQSPEKNSKQLSFGGVELHPGRQQAIFEGRDLDLTGTEFALLQMLMRN 181 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L++E+ + R P + ID+ I LRKKL + +T+ GRGY+L Sbjct: 182 PGQILSRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 238 >gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB [Brevundimonas diminuta ATCC 11568] gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB [Brevundimonas diminuta ATCC 11568] Length = 229 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ ALA ++ L+ E ++V V GE+G+ D I+LD L + G EV Sbjct: 5 ILVMEDEDALATLLQYNLEKEGYDVAVAADGEEGMLQIDERTPDLILLDWMLPKLSGIEV 64 Query: 63 LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 R +R + P+ +L+ D+VRGL +GADDY++KPF+ EL ARIRA++RR R Sbjct: 65 CRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVLRRIR 124 Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G A + D+ ++ A V G +HL E+++++ ++E L+ ++ Sbjct: 125 PGLADDRVNHADIIMDRVAHRVSRAGREVHLGPTEFRLLDHFLKHPGRVFSREQLLDAVW 184 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 E + +DV + +LRK L N G N I TV GY L N Sbjct: 185 GSDVYVEARTVDVHVGRLRKAL-NVEGTVNPIRTVRSAGYSLDLN 228 >gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 239 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 129/227 (56%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIP 58 RIL+++DD +LA I +ML+SE+ Y L DG + L F+E D ++LDL L + Sbjct: 17 RILVVDDDASLAEMIGIMLESES---YTPTLCHDGAKALDTFHEVNPDLVLLDLMLPGLD 73 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G E+ R +R ++ P+ +L+ + +D V GL++GADDY++KPF +EL+AR+ +RR Sbjct: 74 GVEICRLIR-SESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRR 132 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + A + GDL +++ V+ I LT E++++ L+ T+E L+ + Sbjct: 133 TNPGAAEHVRAGDLDIDVAGHQVKRGESIISLTPLEFELLVTLARSPWKVFTREELLSQV 192 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + + + ++++V + +LR K+ + + TV G GY + E+A Sbjct: 193 WGYQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRVGESA 239 >gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 127/230 (55%), Gaps = 11/230 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 +IL+ +D+ + I L E++ V + GE +++ FY E IILD+ + + Sbjct: 5 KILVADDESRMRKLIRDYLVREDYEVVEAENGEQALDM--FYMDSEISLIILDVMMPKVD 62 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 GF VL+ +R S PV +L+ D + G + GAD+YI+KPF+ + L+AR+ A++RR Sbjct: 63 GFAVLKEIRETS-SIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNAVLRR 121 Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S + + ++ G + +++DA G+ + L+ KE++++ + L++E LN Sbjct: 122 STDDSLGKKVVEAGGIQLDVDAHVATNDGNPVELSVKEFELLYYFINNEGIALSREKILN 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 H++D + + ID + KLR KL + NYI+T+WG GY +AK Sbjct: 182 HVWDYDYFGDARTIDTHVKKLRSKLDDKG---NYIKTIWGMGYKFEVDAK 228 >gi|258620439|ref|ZP_05715477.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM573] gi|258587318|gb|EEW12029.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM573] Length = 228 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 6/223 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD L + +L+ E F++ + GE G+ + D I+LD+ + + G E Sbjct: 4 ILLIDDDTELTSLLTEVLQYEGFDISEANDGEAGLAAVT-DQIDLILLDVMMPKLNGMET 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 L+ LR K +TPV +L+ D+V GL+ GADDY+ KPF+ EL+ARIRAI+RR++ Sbjct: 63 LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNA 121 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 +I D+ V + QG + LT E+ ++ TLTKEM + Sbjct: 122 LAPKHTDVIECQDIQVYPGKQEAYCQGQLLDLTTTEFALLTHFVQSPGETLTKEMLSIEV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 R + ID+ + LRKKL GK I+T+ GRGY++ Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERLDGKARIKTLRGRGYLM 224 >gi|300024709|ref|YP_003757320.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299526530|gb|ADJ24999.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 225 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 4/227 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL+EDD A + L+ E V G D + +D +ILD L + G Sbjct: 1 MRILLLEDDANTAAYVSKGLEEEGHTVDHLADGRDAVAQAVGETYDVVILDRMLPGLDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++ +R A PV L+ + ++D+V GL +G DDY+ KPF EL+AR+ A+ RR Sbjct: 61 AIIKEIRSAGRRVPVLFLTALGGVDDRVEGLDAGGDDYLVKPFAFSELLARVNALARRPH 120 Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 G L V GDL ++L ++ V G I L +E++++E+L + +T+ M L + Sbjct: 121 TIGEETRLKV-GDLEIDLVSRKVTRGGDTIDLQPREFRLLEVLMRNRGRVVTRTMLLERV 179 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 + +P+ +++ I +LR K+ I T+ G GY + + A Sbjct: 180 WSFHFDPKTSVVETHISRLRAKIDKPY-DTELIHTIRGCGYTVNDGA 225 >gi|206970631|ref|ZP_03231583.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206734267|gb|EDZ51437.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 232 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 8/224 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++DD+ + ++ L E F V+ GE+ +E+ ILD+ + + G E+ Sbjct: 6 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 R +R K S P+ LS SS DKV G +GADDYI KPF+ E +AR++A +RR Sbjct: 66 CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124 Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 Q+ + + +N+ ++TV + G ++LT EY ++ L++ +N T E Sbjct: 125 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 184 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I +LR K+ +I+ VWG GY Sbjct: 185 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228 >gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 236 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 9/229 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D+K +A ++ LK E + V G D ++ + + D I+LD+ L G E Sbjct: 4 KILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVEEIKPDLILLDIMLPQRDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R K P+ +L+ S DKV GL+ GADDY++KPF+ EL+AR++A +RR + Sbjct: 64 VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANMRRHQQ 122 Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 A I G L ++ DA V +G I LT +E++++ L+ +T+E Sbjct: 123 IASKTEEEDESNEIEVGSLIIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 L ++ +V+ +DV + +LR+K+ + +I T G GY LR Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLR 231 >gi|310658660|ref|YP_003936381.1| two-component response regulator yycf [Clostridium sticklandii DSM 519] gi|308825438|emb|CBH21476.1| Two-component response regulator yycF [Clostridium sticklandii] Length = 228 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 3/222 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + ++ L+ + + G D +E K ++D I+LDL L I GFEV Sbjct: 4 ILVVDDEPLIVKGLKFSLEQGGHIIDTSFDGNDALENIKSKDYDIILLDLMLPIIDGFEV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + +R P+ ILS K++GL+ GADDYI+KPFN EL AR+ AI+RR Sbjct: 64 CKKVRETS-DVPIIILSAKGEDISKIKGLEIGADDYITKPFNIMELKARVNAILRRMEKS 122 Query: 123 AQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + + GD+++N + V I+LT KE+ ++ LL N ++E L ++ Sbjct: 123 KKIVAQKHLGDITLNYLDRKVTRNSEEINLTSKEFDLLFLLMDNPNKVFSREALLEKVWK 182 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +++ +DV I KLR+K+ + + +I T WG GY + Sbjct: 183 YEHFGDLRTVDVHIRKLREKIEDNSSNPVHIMTKWGEGYYFQ 224 >gi|300855144|ref|YP_003780128.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435259|gb|ADK15026.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 18/226 (7%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++DD+ + + +MLK++N + G + +E+ K + D I+LD+ + + G Sbjct: 6 VLIVDDDENIRELLTIMLKNQNIDSLCAKDGIEALEILKSNKIDLILLDVMMPRMDGMMA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 +R ++ P+ ILS DK+ GL GADDYI+KPFN L+A+IR+ +RR Sbjct: 66 CMKIR-ESLNLPIIILSAKVDDADKIMGLTIGADDYIAKPFNSMLLIAKIRSHLRRYKEF 124 Query: 119 -SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 S H SLI D+ +N+D TV++ I+LT E++++ L+ K+ L+ + Sbjct: 125 NSNFHDNSSLIKIQDMLINMDKHTVKIDNSEINLTPHEFKILAFLAKNKDNVLSIKQIYE 184 Query: 177 HLYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ +EP + + + V I +LR+KL K+YI+TVWG GY Sbjct: 185 NVW---EEPYMEFDRTVTVHIRRLRQKLK-----KDYIKTVWGVGY 222 >gi|167768194|ref|ZP_02440247.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1] gi|317499089|ref|ZP_07957368.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709718|gb|EDS20297.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1] gi|291560216|emb|CBL39016.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893609|gb|EFV15812.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 233 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 9/229 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L+++D+K +A IEL LK+EN+NV+ G+D + + D ILD+ L DI GFE+ Sbjct: 6 VLVVDDEKEIADFIELYLKNENYNVHKFYNGKDALACVEHENIDLAILDVMLPDIDGFEI 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 L+ +R+ + PV +L+ S DK+ GL GADDYI KPF EL+AR++A +RR Sbjct: 66 LKQIRLTH-NFPVIMLTAKVSSMDKINGLTLGADDYIEKPFEPLELMARVKAQLRRFTRY 124 Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S + + + L +N I LT E+ ++ +L+ + ++ E Sbjct: 125 NDGSGMNQEDTLEIAGLILNRATHQCTYGEEEITLTPLEFSILWILTQNRGKVISSENLF 184 Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + + + V I LR+KL G K I+TVWG GY + E Sbjct: 185 EQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVEE 233 >gi|207728005|ref|YP_002256399.1| response regulator protein [Ralstonia solanacearum MolK2] gi|207742406|ref|YP_002258798.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|300705088|ref|YP_003746691.1| response regulator, chey family [Ralstonia solanacearum CFBP2957] gi|206591249|emb|CAQ56861.1| response regulator protein [Ralstonia solanacearum MolK2] gi|206593796|emb|CAQ60723.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|299072752|emb|CBJ44105.1| putative response regulator, CheY family [Ralstonia solanacearum CFBP2957] Length = 232 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 6/224 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 MRIL+ EDD LA + L+ + V G +D +ILD+GL + Sbjct: 1 MRILIAEDDATLADGLTRSLRQAGYAVDRAADGAAADAALSAQTAQTYDLLILDVGLPRL 60 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G EVL+ LR PV IL+ S++++V+GL GADDY++KPF EL AR+RA+VR Sbjct: 61 SGLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVR 120 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R G +L+ G L+ + + + + L+ +E ++E+L R ++KE ++H Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIHDQVVDLSAREIGLLEILLSRAGRLVSKEQLVDH 180 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L +E I+V++ +LRKK+ I TV G GY L Sbjct: 181 LCGWGEEVSNNAIEVYVHRLRKKIEVDG---IRIATVRGLGYCL 221 >gi|171780277|ref|ZP_02921181.1| hypothetical protein STRINF_02065 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281625|gb|EDT47060.1| hypothetical protein STRINF_02065 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 230 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 134/228 (58%), Gaps = 8/228 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+IED+K LA + L L+ E ++V V G G++ +FD I+LDL L D+ GFE Sbjct: 4 KILIIEDEKNLARFVSLELQHEGYSVVVETNGRLGLQTALDDDFDLILLDLMLPDMDGFE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + R LR+ K T + +++ SI D V GL GADDYI KPF EEL+AR+RA+ RR Sbjct: 64 ITRRLRLEK-DTSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQDA 122 Query: 119 -SRGHAQSLIVTGDLSVNLDAKT-VEVQG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S+ + G L + L+ + V+G I LT +EY ++ +L N +T+E L Sbjct: 123 NSKQDKEGQAKEGLLGLRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREELL 182 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 ++ + E ++DV+I LR K+ + G ++YI+TV G GY++RE Sbjct: 183 ASVWRYDTDIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYIIRE 229 >gi|167839126|ref|ZP_02465903.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 220 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 5/225 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD + +E LK E F V G+ + + ++LDLGL D G Sbjct: 1 MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL ALR + PV +++ ++ D++ GL GADDY+ KPF EEL+ARIRA+ RR Sbjct: 61 AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLIKPFALEELLARIRAVNRRQA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G AQ+++ G L ++ V + L+ KE+ ++ L +++E F LY Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225 +E E + V I LRKKL G + I TV G GY + + A Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 220 >gi|332880617|ref|ZP_08448291.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681605|gb|EGJ54528.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 227 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/223 (34%), Positives = 123/223 (55%), Gaps = 3/223 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+ILLIED++ L +++ L E F V + +E Y++D I+LD+ L G Sbjct: 1 MKILLIEDEEELRNTVREYLTREKFIVECAEDYASAMEKVNDYDYDCILLDIMLPGGSGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL L+ + V I+S SIEDKV GL GADDY++KPF+ EL AR+++++RR + Sbjct: 61 SVLAHLKRMRKQESVIIISAKDSIEDKVEGLNLGADDYLAKPFHLAELNARVKSLLRRKK 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179 + IV G+L++ D + V V G+ ++L KE+ ++ N + + ++ Sbjct: 121 AGGDTSIVLGNLTLVPDTRKVTVDGNELNLNRKEFDLLYYFISNPNRLINRMALAESVWG 180 Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D D+ + + I + LRKK+ AAG + I+ V+G GY L Sbjct: 181 DHIDQADSLDFIYSQVKNLRKKMK-AAGTQAEIKAVYGFGYKL 222 >gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 237 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 10/236 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RIL++ED++ + + L+ E + VY G++G +L ++ D IILDL + G+E Sbjct: 4 RILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKDGWE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + +R + + P+ +L+ D++ GL GADDY++KPF+ ELV R++ I+RR Sbjct: 64 LCEEIR-QQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRG-S 121 Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H Q +I DL + + V V + LT KE++++ L++ ++ Sbjct: 122 HVQIQAKESLLEVIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQ 181 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229 L ++D E + V + +LR+KL +I TVWG GY N +ET Sbjct: 182 LLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237 >gi|28867608|ref|NP_790227.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213967848|ref|ZP_03395995.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|301382485|ref|ZP_07230903.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato Max13] gi|302062264|ref|ZP_07253805.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato K40] gi|302132919|ref|ZP_07258909.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850843|gb|AAO53922.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213927624|gb|EEB61172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|330961965|gb|EGH62225.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. maculicola str. ES4326] gi|330967264|gb|EGH67524.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331014914|gb|EGH94970.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 224 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 3/222 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRIL++ED+ A + L + V + G DG+ L + +D +ILD+ L ++ G+ Sbjct: 1 MRILVVEDEPKTAEYMHQGLTESGYVVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EVL LR ++T + +++ +E+KV+GL+ GADDY+ KPF EL+AR+R ++RRS Sbjct: 61 EVLSRLR-KTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119 Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 + ++ GDL ++ RI LT KE+ ++ LL +++ ++ ++ Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D + + +++V I +LR K+ + K I T+ G GYVL Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220 >gi|30023068|ref|NP_834699.1| two-component response regulator VanRB [Bacillus cereus ATCC 14579] gi|30265077|ref|NP_847454.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42784219|ref|NP_981466.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47530583|ref|YP_021932.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49480366|ref|YP_039053.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140496|ref|YP_086334.1| response regulator [Bacillus cereus E33L] gi|65317022|ref|ZP_00389981.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118480119|ref|YP_897270.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|165870904|ref|ZP_02215556.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634910|ref|ZP_02393228.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167639953|ref|ZP_02398221.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685986|ref|ZP_02877209.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170707061|ref|ZP_02897518.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652353|ref|ZP_02934856.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567210|ref|ZP_03020125.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033021|ref|ZP_03100434.1| DNA-binding response regulator [Bacillus cereus W] gi|196040431|ref|ZP_03107731.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196047515|ref|ZP_03114725.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206970050|ref|ZP_03231003.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206978207|ref|ZP_03239087.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|218234504|ref|YP_002369838.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218906232|ref|YP_002454066.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222098485|ref|YP_002532543.1| response regulator [Bacillus cereus Q1] gi|225867018|ref|YP_002752396.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227817807|ref|YP_002817816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601053|ref|YP_002869274.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687368|ref|ZP_05151225.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725381|ref|ZP_05187164.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254733723|ref|ZP_05191439.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740561|ref|ZP_05198252.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753177|ref|ZP_05205213.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761520|ref|ZP_05213541.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|270000517|ref|YP_003329022.1| DNA-binding response regulator [Bacillus cereus AH187] gi|296505470|ref|YP_003667170.1| two-component response regulator VanRB [Bacillus thuringiensis BMB171] gi|301056524|ref|YP_003794735.1| response regulator [Bacillus anthracis CI] gi|29898628|gb|AAP11900.1| Two-component response regulator vanRB [Bacillus cereus ATCC 14579] gi|30259754|gb|AAP28940.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42740150|gb|AAS44074.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47505731|gb|AAT34407.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49331922|gb|AAT62568.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973965|gb|AAU15515.1| response regulator [Bacillus cereus E33L] gi|118419344|gb|ABK87763.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|164713413|gb|EDR18938.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167512034|gb|EDR87412.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167529660|gb|EDR92409.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128164|gb|EDS97034.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670450|gb|EDT21190.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082359|gb|EDT67425.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561714|gb|EDV15684.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994450|gb|EDX58405.1| DNA-binding response regulator [Bacillus cereus W] gi|196021629|gb|EDX60326.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028563|gb|EDX67170.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|206734627|gb|EDZ51796.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206743566|gb|EDZ54993.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217067588|gb|ACJ81838.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218162461|gb|ACK62453.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218536647|gb|ACK89045.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221242544|gb|ACM15254.1| response regulator [Bacillus cereus Q1] gi|225786171|gb|ACO26388.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227003747|gb|ACP13490.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265461|gb|ACQ47098.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|296326522|gb|ADH09450.1| two-component response regulator VanRB [Bacillus thuringiensis BMB171] gi|300378693|gb|ADK07597.1| response regulator [Bacillus cereus biovar anthracis str. CI] gi|324328974|gb|ADY24234.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942852|gb|AEA18748.1| two-component response regulator VanRB [Bacillus thuringiensis serovar chinensis CT-43] Length = 221 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 9/221 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 IL+IED+ + I L ++NF V V G +GI L + +D ++LD+ L DI G+ Sbjct: 3 HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 + + +R + P+ +L+G+ + E +++G + G DDYI+KPF+ + R+ A++RR Sbjct: 63 ICKIMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 A +++ +L +N A V G++I LT KE+++I L + L++ LN + Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +V++ID I LRKKL G YI+TV G GY Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKL-----GIPYIKTVKGIGY 217 >gi|300779614|ref|ZP_07089470.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533724|gb|EFK54783.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 224 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 124/219 (56%), Gaps = 3/219 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +IL+++DD A++ + ++L++E F V VTD G + + + D ++LDL L + G Sbjct: 4 KILVVDDDPAISEMLTIVLEAEGFEAVPVTD-GGAAVGAFRDQDPDLVLLDLMLPGMSGV 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ + +R + + P+ +L+ + D V GL+SGADDYI+KPF EL+ARIRA +R++ Sbjct: 63 DICKEIR-KESNVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPRELIARIRARLRQNS 121 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 ++ GDL V++ V G I LT E+ ++ L+ + T+E L ++ Sbjct: 122 EEPSEILEIGDLQVDVPQHIVTRDGKEISLTPLEFDLLVELARKPQQVHTREELLESVWG 181 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 R+ + ++++V + +LR K+ + I TV G GY Sbjct: 182 YRNASDTRLVNVHVQRLRSKIEHDPENPEIILTVRGVGY 220 >gi|238925846|ref|YP_002939364.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|238877523|gb|ACR77230.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] Length = 248 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D++ +A +E+ LK+EN+ VY D + + + D ILD+ L D+ GF Sbjct: 21 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ DK+ GL GADDY++KPF E+VAR++A +RR + Sbjct: 81 LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139 Query: 122 HAQSLI---VTGDLSVN---LDAKTVE--VQGHRIHLTGKEYQMIE-LLSLRKNTTLTKE 172 ++ +I + +LS N L+ +T E + G + LT E+ ++ LLS N +E Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIEE 199 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +F D I V I LR+KL++ + YI+T+WG GY Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGY 246 >gi|226199479|ref|ZP_03795037.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|225928555|gb|EEH24584.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] Length = 218 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/181 (37%), Positives = 104/181 (57%), Gaps = 3/181 (1%) Query: 45 FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104 FD +ILDLGL + G EVLR LR + PV IL+ S++++V+GL GADDY++KPF Sbjct: 16 FDLLILDLGLPRMSGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFA 75 Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164 EL AR+RA+ RR G +++ G LS + + + L+ +E ++E+L R Sbjct: 76 LNELEARVRALTRRGAGGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQR 135 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 ++KE ++HL + +E I+V++ +LRKK+ + I TV G GY L + Sbjct: 136 IGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKA 192 Query: 225 A 225 A Sbjct: 193 A 193 >gi|171777476|ref|ZP_02919212.1| hypothetical protein STRINF_00039 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283254|gb|EDT48678.1| hypothetical protein STRINF_00039 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 225 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 1/223 (0%) Query: 5 LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64 ++ED+K +A +I+ +L++ + V + GE ++ +D ++LD+ L G VL+ Sbjct: 1 MVEDEKGIAEAIQAILENHRYEVDLVFDGESALDYILTGLYDLVLLDIMLPKFDGVSVLK 60 Query: 65 ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124 +R + P+ L+ S +ED+V GL GADDY+ KPF EEL+ARIR R+S Sbjct: 61 RVRQMGMEVPIIFLTAKSQLEDRVLGLDLGADDYMIKPFEAEELLARIRLRTRQSSITQV 120 Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184 + + G+L +NLD + + V + L+ KE+ ++E + K + ++ DE Sbjct: 121 NHLKFGNLILNLDTRELSVAEREVKLSNKEFLLMETFLRNSKKIIPKNQLILKVWGPLDE 180 Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227 + ++VFI LRKKL A I+T G GY L + K+ Sbjct: 181 SDYNQLEVFISFLRKKLRFLAASA-VIKTTKGVGYSLEDGEKE 222 >gi|320527553|ref|ZP_08028733.1| putative subtilin biosynthesis regulatory protein SpaR [Solobacterium moorei F0204] gi|320132110|gb|EFW24660.1| putative subtilin biosynthesis regulatory protein SpaR [Solobacterium moorei F0204] Length = 230 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 9/225 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D+K L ++ L + V G DG+ L K + D I+LD+ + ++ GFE Sbjct: 3 KILIIDDEKELVALLQDELTERGYQVLAAHNGADGVTLSK-KQPDLIVLDIMMPEMDGFE 61 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V R +R ++ P+ LS + DK+R L G DDYISKPF EL+ARI A +RR + Sbjct: 62 VCRKIR-DEVLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120 Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 ++ + +LS++L +V++ G I L+ +E ++ELL+L ++E Sbjct: 121 SQYINAEKKRTRLYFNELSIDLLEHSVKIDGETIPLSKRECDIVELLALHAGQVFSREHI 180 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ + + + I K+RKK + + YI TVWG GY Sbjct: 181 YERVWGYDSDGDSYTVVEHIRKIRKKFALVSADTEYISTVWGIGY 225 >gi|299138867|ref|ZP_07032044.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298599021|gb|EFI55182.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 227 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 115/218 (52%), Gaps = 1/218 (0%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+IEDD + +++ +E + V++ G G+ CK ++LDL L + G EV Sbjct: 4 ILVIEDDPRIQRALKRQFTAEGYEVHIEGEGPAGLTACKNMRPATVVLDLMLPGLSGREV 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 + ++ TPV ILS +S + DKV L++GADDY++KPF+ EL+AR++A +RR+R Sbjct: 64 CKEIKAWSPDTPVIILSAISEVADKVLLLETGADDYVTKPFSPRELLARVQAAMRRTRRT 123 Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 Q + G+++V+ V G + LT E++++ + ++ L+ ++ Sbjct: 124 VQEPPLNFGNVTVDFLKMEVYKAGSLVPLTAHEFKLLRFFLDNPGRAIARDELLSGVWGL 183 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + +D I KLR+KL + TV G GY Sbjct: 184 NFHLTTRTVDNQILKLRQKLEADPANPVHFRTVHGFGY 221 >gi|261254101|ref|ZP_05946674.1| copper-sensing two-component system response regulator CpxR [Vibrio orientalis CIP 102891] gi|260937492|gb|EEX93481.1| copper-sensing two-component system response regulator CpxR [Vibrio orientalis CIP 102891] Length = 230 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 82/227 (36%), Positives = 118/227 (51%), Gaps = 8/227 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 ILLI+DD L ++ +L E F V + GE+G+ L + D I+LD+ + + G E Sbjct: 4 ILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLALLN-DQIDLILLDVMMPKLNGMET 62 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120 L+ LR TPV +L+ D+V GL+ GADDY+ KPF+ EL+ARIRAI+RR++ Sbjct: 63 LKRLR-ETWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELMARIRAILRRTQSS 121 Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 I D+ + QG I LT E+ ++ TLTKE Sbjct: 122 NNKAAKNSDCIEYQDIQAFPGKQEAYCQGELIDLTTTEFALLAHFIQHPGDTLTKEALSL 181 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223 + R + ID+ + LRKKL A GK+ I+T+ GRGY+L E Sbjct: 182 DVLGKRLAAFDRAIDMHVSNLRKKLPERADGKSRIKTIRGRGYLLVE 228 >gi|239905562|ref|YP_002952301.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio magneticus RS-1] gi|239795426|dbj|BAH74415.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio magneticus RS-1] Length = 231 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 4/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+ + + L++E + V LG + + L +E D I+LDLGL D+ G E+ Sbjct: 8 ILIVDDEPPIRRFLTPFLEAEGYAVVEAGLGREALSLIASHEPDVILLDLGLPDMDGEEL 67 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122 LRAL + + V +LS + DKV L GA DY++KPF+ EL ARIR +RR G Sbjct: 68 LRALPMW-VRAKVIVLSVRARERDKVTALDLGASDYLTKPFSLAELAARIRVCLRRGGGD 126 Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 +S V G+L ++++A T + +HLT E++++ L+ +T L ++ Sbjct: 127 GESPPTRYVFGELWIDMEAHTAGLAAQDLHLTPTEFKLLAYLARHAGKVVTHGQLLKAVW 186 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + + + + I KLR+K+ Y+ T G GY Sbjct: 187 GKQSQGQEHYVRIHIHKLRQKIEQDPARPRYLRTETGIGY 226 >gi|228995632|ref|ZP_04155297.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003260|ref|ZP_04161093.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757994|gb|EEM07206.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228764128|gb|EEM13010.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 233 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+++D+K + I + LK+E + V + G +G+ + + E ++LD+ + I G + Sbjct: 6 ILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGIHM 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 +R AK P+ +LS + DK+ GL +GADDY++KPFN EL+ARI++ +RR Sbjct: 66 CMKIREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124 Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 ++ I G++ +N+ V V+ + LT +E+ ++ELL+ + E Sbjct: 125 NGFIVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIYE 184 Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++ R + V I K+R+K YI+TVWG GY Sbjct: 185 KVWNERSFQSDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGY 227 >gi|120610269|ref|YP_969947.1| osmolarity response regulator [Acidovorax citrulli AAC00-1] gi|326316447|ref|YP_004234119.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|120588733|gb|ABM32173.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] gi|323373283|gb|ADX45552.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 243 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 16/232 (6%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58 +IL+++DD + + L E F V V EDG L + + I+LDL + Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEVMV---AEDGKALNRILLRETVELIVLDLMMPGED 66 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G + R LR A TP+ +L+ D++ GL+ GADDY+ KPFN EL+ARI A++RR Sbjct: 67 GLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126 Query: 119 SRGHAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170 +GD + +L + ++ G + LT E+ M++ L L+ Sbjct: 127 RPPQEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLS 186 Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +E L L GR+ EP + +DV + +LRK + A YI+TVWG GYV Sbjct: 187 REK-LALLARGREFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237 >gi|186686379|ref|YP_001869575.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468831|gb|ACC84632.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 232 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 7/224 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MRILL++D+ L + +L E + V G G E + +D +ILD L G Sbjct: 1 MRILLVDDEVELTEPLSRLLTREGYIVDAAFDGTIGSEYAQAGSYDLLILDWMLPGKTGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E+ + LR +TPV L+ +++D+V+GL +GADDY+ KPF EL+AR+RA++RRS Sbjct: 61 EICQQLRRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS- 119 Query: 121 GHAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 G TG DL ++ + + QG I L+ KE Q+++ +T + Sbjct: 120 GSQTYETTTGRLTVADLELDCENQVAYRQGRIIELSQKESQLLQYFMEHTGQLMTHAQIM 179 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +L+ ++P +I I LR+K+ I TV+G+GY Sbjct: 180 ENLWQEEEQPSSNVIAALIRLLRRKI-EVGRETALIHTVYGKGY 222 >gi|15597675|ref|NP_251169.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107101924|ref|ZP_01365842.1| hypothetical protein PaerPA_01002970 [Pseudomonas aeruginosa PACS2] gi|116050423|ref|YP_790758.1| two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218891541|ref|YP_002440408.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254235479|ref|ZP_04928802.1| hypothetical protein PACG_01395 [Pseudomonas aeruginosa C3719] gi|254240911|ref|ZP_04934233.1| hypothetical protein PA2G_01589 [Pseudomonas aeruginosa 2192] gi|296389103|ref|ZP_06878578.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|9948530|gb|AAG05867.1|AE004675_8 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115585644|gb|ABJ11659.1| probable two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126167410|gb|EAZ52921.1| hypothetical protein PACG_01395 [Pseudomonas aeruginosa C3719] gi|126194289|gb|EAZ58352.1| hypothetical protein PA2G_01589 [Pseudomonas aeruginosa 2192] gi|218771767|emb|CAW27544.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 226 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL EDD +A I L ++ V D L + FD ++LDLGL D G Sbjct: 1 MHVLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +L+ LR + PV +L+ ++ D+V GLQ+GADDY+ KPF+ EL AR+ + RRS Sbjct: 61 RLLQRLRQQGVDLPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHTLQRRSA 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 G ++I G LS + + + G + L+ +E +++ L + L+ E + +Y Sbjct: 121 GRCVNVIEHGRLSYDPSTRETWLDGRPVELSRREQALLQALLNNRGRILSGEQLKDSVYG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DE E ++V I LR+KL NA ++TV G GY L Sbjct: 181 FGDEVESNALNVHIHHLRRKLGNA-----IVQTVRGLGYRL 216 >gi|327481131|gb|AEA84441.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166] Length = 225 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 15/226 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +LLI+DD+ L + L E F + G+ + Y+ A++LD+ L D G E+ Sbjct: 4 LLLIDDDQELCELLISWLAQEGFVAHACHDGQSAKQALAQYQPAAVVLDVMLPDGSGLEL 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121 L+ LR PV +LSG D++ GL+ GADDY++KP + EL AR+RA++RRS+ Sbjct: 64 LKQLRSEHPDLPVLMLSGRGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRSQPA 123 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH---- 177 A S + GDLS + V GH + LT E +++E L + + K+ H Sbjct: 124 AAPSQLELGDLSYSPARGIASVGGHDVSLTLSEGRILEALLAQAGEPIDKQALAQHALGR 183 Query: 178 ---LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220 LYD + +D+ + LR+KL A G I + RGY+ Sbjct: 184 KLTLYD-------RSLDMHVSNLRRKLGPHADGSPRIVALRSRGYL 222 >gi|325284509|ref|YP_004257048.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324316683|gb|ADY27794.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 221 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 4/223 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 ++L+++DD A+ ++ L +E V G E D I+D L + G + Sbjct: 3 QVLIVDDDPAILEILQAYLVAEGHTVLSASDGFGARE--GLPRADLAIIDWMLPGVSGMD 60 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 ++R R A + P+ +L+ EDK+RGL G DDY+ KPF+ E++AR+RA++RR Sbjct: 61 LVREARAADMQLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVMARVRALLRRV-- 118 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + + GDLS++L + T + G + L+ E+ ++ L+ T+E L ++ Sbjct: 119 GVREEVSIGDLSIDLRSHTASLSGLPLELSKLEFDLLTALAQHPGMAWTRERLLERVWGS 178 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 +++DV I LRKKL + + +IETV G GY RE Sbjct: 179 DFLGTERVVDVHITGLRKKLGDTSDNPQFIETVRGVGYRFREE 221 >gi|191637032|ref|YP_001986198.1| Response regulator [Lactobacillus casei BL23] gi|301065366|ref|YP_003787389.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|190711334|emb|CAQ65340.1| Response regulator [Lactobacillus casei BL23] gi|300437773|gb|ADK17539.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381059|gb|AEA52535.1| Two-component response regulator [Lactobacillus casei LC2W] gi|327384234|gb|AEA55708.1| Two-component response regulator [Lactobacillus casei BD-II] Length = 228 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59 M+IL+++DDK + + + +K+E + G++ I +L + +ILD+ + ++ G Sbjct: 1 MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 60 Query: 60 FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119 +V++ +R P+ I+S ++ DK++GL +GADDY++KPFN E++AR+++++RRS Sbjct: 61 MDVVKEVR-KDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119 Query: 120 RGHAQS----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + + ++ G L++ D+ V + G +I LT E+ ++ LL+ N + + Sbjct: 120 QNEVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 179 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G+ IETVWG GY Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGY 224 >gi|171060117|ref|YP_001792466.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170777562|gb|ACB35701.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 213 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+LL+EDD L +++ L++ +VY L + + FD ++DL L D G Sbjct: 1 MRVLLLEDDIDLGQAVDDHLEAAGHSVYWCKL----VSQVRNVTFDLALVDLNLPDGDGV 56 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +++R R A TPV +L+ + D++RGLQ+GADDY+ KPF+ +E++ARI A++RRS Sbjct: 57 DLVRYWRQAGRLTPVIMLTARDQVSDRIRGLQAGADDYLVKPFDLDEMLARIDAVLRRSS 116 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK-EMFLNHLY 179 + + D V+L+ + V QG + LT E+ ++ L+ R + E+ + Sbjct: 117 PSPR--LQVHDNVVDLEQRQVLHQGQPLDLTAMEWAVLRCLASRPGRIFNRGEIDVALAA 174 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 DG+ + ++V + +LRKKL G + I T G GY L Sbjct: 175 DGQPSSDSNTLEVIVSRLRKKL-----GADVISTHRGMGYRL 211 >gi|119025684|ref|YP_909529.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118765268|dbj|BAF39447.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 240 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 14/227 (6%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ LA +I + +E + V G ++ D +I+D+ L + G E Sbjct: 15 VLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIMLPVMDGLEA 74 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118 + + VA+ PV IL+ DKV GL +GADDY++KPF+ EL+AR +A++RR Sbjct: 75 TKRI-VAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133 Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + L+ G L ++ + V V G ++HLT E+ ++ L+ + + LT+E Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKL 193 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L ++D D + +D + LR KL G I TV G GY Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSKTIRTVHGVGYAF 235 >gi|319790209|ref|YP_004151842.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] gi|317114711|gb|ADU97201.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] Length = 212 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 16/222 (7%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58 M+I L+EDD ++ + ++ +L SE F+V E + Y EFD +ILD+ L Sbjct: 1 MKIALVEDDLSILNLLKRVLLSEGFSVREFSTAEAFMNAVFEYGEEFDLVILDVMLPGTD 60 Query: 59 GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118 G LR S P+ +L+ +S E+KV+GL SGADDY++KPF +EL+ARIRA++RR Sbjct: 61 GVTACSFLRERGFSAPILMLTALSEEEEKVKGLDSGADDYLTKPFGIKELLARIRALLRR 120 Query: 119 S-RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 S RG T + + V V+G + LT KE +++++L + ++KE + Sbjct: 121 SERGF------TREGEFRFTDEGVVVEGREVKLTRKEKEILKVLVENRGKAVSKEEIVAK 174 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ G ++ +++DV + LR KL + I+TVWG GY Sbjct: 175 VWKG-EQVNKRVVDVHVKHLRDKLG------DRIKTVWGVGY 209 >gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 229 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L++ED+++ A + +L+ E F V G+ +E D ++LDL L + G + Sbjct: 3 RVLIVEDEESFADPLAFLLRKEGFTAAVAVTGQQALEEFDRNGADIVLLDLMLPGMSGTD 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118 V + LR + + PV +++ S DKV GL+ GADDY++KP++ EL+AR+RA++RR Sbjct: 63 VCKQLR-QRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121 Query: 119 --SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175 S G L+++ G + ++++ V V G + L KE+ ++E L LT+ + Sbjct: 122 PGSDGELAPLVLSAGPVRMDVERHVVTVDGGEVSLPLKEFDLLEYLLRNVGRVLTRGQLI 181 Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + ++ + K +DV + +LR K+ G ++ TV G GY Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGY 225 >gi|152974106|ref|YP_001373623.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022858|gb|ABS20628.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 8/226 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+ +D+K + ++ L+ E + V GE+ ++L ++ +ILDL + I G Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R LR + P+ +L+ DK+ GL GADDYI+KPF+ E++ARI+A++RR Sbjct: 64 EVCRRLR-NNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 + ++++ L++++ V V I LTGKE ++++ + TK Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +++D + + V I KLRKK+ +I+TVWG GY Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGY 228 >gi|254229759|ref|ZP_04923167.1| transcriptional activator protein CopR [Vibrio sp. Ex25] gi|151937726|gb|EDN56576.1| transcriptional activator protein CopR [Vibrio sp. Ex25] Length = 232 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 11/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++IL++ED+ ++ L + V + G DG+ E+D I+LD+ L + G+ Sbjct: 3 LKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 +VL LR + I TPV +L+ +ED+VRG + GA+DY+ KP+ EL+ARI+ + R Sbjct: 63 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRH-- 120 Query: 121 GHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 H + +V DL +++ + G + LT KEY ++ELL + L++ Sbjct: 121 -HISAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTT 179 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224 + ++D + + +IDV + +LR K+ + K I TV G GY L E+ Sbjct: 180 IASLVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 229 >gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 227 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 3/220 (1%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL++ED+ + + L + V V G +G+ + + D I+LD+ + + G E Sbjct: 4 ILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVMMPGMDGLEF 63 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121 LR R A TPV L+ + DKV GL+ GADDY++KPF+ EL+ARIRA++RR+ Sbjct: 64 LRKYR-ADAGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLRRAGEK 122 Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181 + G L ++ ++T V+G R+ LT E+++++L T+ L HL + Sbjct: 123 PTGGPVRVGVLELDAASRTFVVRGQRVDLTRSEFELMDLFMRHPQRVFTRVELLEHLQED 182 Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E + +DV + +R K+ G IETV+G GY L Sbjct: 183 SVGSE-RTMDVHVRNIRAKIEEEPGKPRLIETVFGVGYRL 221 >gi|319898567|ref|YP_004158660.1| two-component response regulator [Bartonella clarridgeiae 73] gi|319402531|emb|CBI76074.1| two-component response regulator [Bartonella clarridgeiae 73] Length = 228 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 123/231 (53%), Gaps = 10/231 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M+IL+IEDD+ +E + G+ G L + ++D +++D L G Sbjct: 1 MKILIIEDDRETGRYLEKAFLEAGHAADIAYDGDTGYTLAETIDYDVMVVDRMLPHRDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 ++ LR TPV ILS +S ++D++ GL++G DDY++KP+ EL+AR+ + RR Sbjct: 61 SIVAGLRAKGNETPVLILSALSQVDDRITGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120 Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 A+++ GDL ++ A V+ I L +E++++E L +T+ M L +++ Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGEKNIVLQPREFRLLEYLMRYSGQVVTRTMLLENVW 180 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAK 226 D +P+ +IDV I +LR K+ K++ + TV G GY+L+ K Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDVPLLHTVRGAGYMLKAPDK 226 >gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 234 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/221 (32%), Positives = 122/221 (55%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 +L++ED+ +A +E L+ E F G + L + D ++LD+ L ++ G EV Sbjct: 14 VLVVEDEPEIAEILEGYLRREGFRTERASDGRQALNLVRAARPDLVLLDIMLPEMDGLEV 73 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120 LR +R + TPV +++ + DK+ GL+ GADDY++KPF+ E+VAR++A++RR Sbjct: 74 LRRIRSSG-HTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRVVLA 132 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + ++ G L ++ + + G R+ LT E++++E L+ ++ L Sbjct: 133 EAPKEVLRVGPLEIDSEKVVARLGGVRLELTPTEFRLLEALARTPGKAFSRAELLEAALP 192 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 D E +++DV + LR+KL AAGG +ETV G GY L Sbjct: 193 DSDALE-RVVDVHLKNLRRKL-EAAGGAGLLETVRGVGYRL 231 >gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] Length = 232 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 + IL+ +D+ +A IE+ L+ E ++V GE+ I++ + D ++LD+ + + G+ Sbjct: 4 ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIQVIETQPIDLVVLDIMMPKMDGY 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118 EV R +R AK P+ LS +S DKV GL GADDY++KPF ELVAR+ A +RR Sbjct: 64 EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 ++S + G + ++ + +TV V G ++ LT KE+ ++ LL+ E Sbjct: 123 TLNQPKVAESKSALAVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVEN 182 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 ++ + V I LRKKL I+TVWG GY Sbjct: 183 IFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >gi|239825816|ref|YP_002948440.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239806109|gb|ACS23174.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 233 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 127/221 (57%), Gaps = 4/221 (1%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+++D++ + +I+ L+ ++ V G + + FD IILD+ + I G E Sbjct: 5 KILVVDDNEDICLTIKQYLELYHYFVEAVHSGSEALLRIINNNFDLIILDIMMEGIDGME 64 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 + +R ++ P+ +S + EDK++ L G DDYISKPF+ +EL ARI +RR Sbjct: 65 LCSMIR-DRVDCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLRREER 123 Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 R + + L+ + +++++L A V +G ++HLT KEY++I+LL L KN +KE + Sbjct: 124 IRSNERQLLSSKNITIDLLANEVFCKGVKLHLTKKEYEIIKLLMLNKNMVFSKERIFESV 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + E +++ + I +RKK+ + +YI+T++G GY Sbjct: 184 WGLDSESQLETVTESIKNIRKKIRSLDPEHSYIKTLYGLGY 224 >gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753] gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/220 (33%), Positives = 120/220 (54%), Gaps = 6/220 (2%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++ + I+ + E F G +E+C+ FD II+D+ + ++ GF Sbjct: 3 RLLIVDDEERIRDIIKKYAQFEGFETVEAVDGLQAVEICRKESFDLIIMDVMMPELDGFS 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120 +R +R STPV +LS DK+ G + G DDY+ KPF+ +EL+ R+ AI++RS Sbjct: 63 AVREIRKTS-STPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILKRSGG 121 Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179 G AQ +VT G L+V+ + V + G R+ +T KEY + L K LT+E +N ++ Sbjct: 122 GEAQRDVVTYGGLTVDFTGRLVYIDGKRVDMTPKEYDLFFYLVKNKGIALTREKLINEVW 181 Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 + + +D I LRK L +G I T+ G GY Sbjct: 182 GYDFYGDDRTLDTHIKLLRKSLGEYSGT---ITTLRGVGY 218 >gi|134298499|ref|YP_001111995.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051199|gb|ABO49170.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 232 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 114/221 (51%), Gaps = 5/221 (2%) Query: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62 IL+ +DD + + L+ E + V GE ++L + D +I+D+ + + G E Sbjct: 6 ILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLEA 65 Query: 63 LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121 + +++ K+ P+ ILS + DK+ G + G DDY +KPF+ EL R++A++RRS+ Sbjct: 66 SQKIKM-KVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAV 124 Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 + ++ + + + V + G + LT KE+ M+ L++ N ++ L + Sbjct: 125 PEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQI 184 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ E + + V I +LR+K+ A I+TVWG GY Sbjct: 185 WESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGY 225 >gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 242 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 12/232 (5%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +ILL+ED+KA+ ++ L+ E + V G+ +E + ++FD I+LDL L + G Sbjct: 7 KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGER 66 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 V RA+R P+ +L+ +ED++ GL+ GADDYI KPF+ ELVAR+RA+ RR+ Sbjct: 67 VCRAIRDTS-DVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALFRRTHL 125 Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174 + + GDL +++ + V+G+ + LT E++++ L+ + E Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGNEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226 L + ++G + + ID + LR KL + ++ TV G GY A+ Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAQ 233 >gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 2/219 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +RILL++D+ + +EL L++E F V GE + + +E ++LD+ + + G Sbjct: 7 IRILLVDDEPHILQFLELGLRNEGFEVRSAPDGEQAVIVASNFEPHVVVLDVMMPGMDGL 66 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R L+ V +L+ I+D+V+GL GADDY+ KPF+ EEL+ARI+A +R Sbjct: 67 EVCRRLKEEGKDVAVIMLTAKDEIDDRVKGLTIGADDYMVKPFSFEELLARIQARLRNQF 126 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 I G +++ K + QG + L+ EY++++LL + + L+K LN ++D Sbjct: 127 PSLLGEIRLGSFTIDDRKKEIAYQGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 E I++V+I LR+KL + I T+ G GY Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGDKE--HRVIRTLRGAGY 223 >gi|312130354|ref|YP_003997694.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311906900|gb|ADQ17341.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 227 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 3/224 (1%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 ++ILLIED+ + I+ L+ N V + G+ G+ L + E+ II D+ L +I G Sbjct: 4 LKILLIEDEVKTLNLIKEGLEENNAQVDIAYDGQMGLTLAERNEYSLIISDIILPEINGL 63 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 + + LR TP+ +L+ + + ED + GL SGADDY+SKPF EL ARIRA+ RR Sbjct: 64 TLCKTLRDNGNHTPILLLTALGTTEDIITGLDSGADDYLSKPFEFSELRARIRALTRRGN 123 Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178 Q +++ DL +N+D K V+ I LT KE+ ++E ++K + Sbjct: 124 AVIQKSNILRVADLELNVDTKAVKRGDKEITLTAKEFSLLEFFMSNVGRVISKVELAEKI 183 Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222 +D + +I+V++ LRKK+ K I T G GYV++ Sbjct: 184 WDITFDTGTNVIEVYVNFLRKKIDKDFDVK-LIHTQIGMGYVMK 226 >gi|239627972|ref|ZP_04671003.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239518118|gb|EEQ57984.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 219 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/224 (30%), Positives = 126/224 (56%), Gaps = 13/224 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57 +RIL+++D+K + I++ L + + +DGI K E FD I+LD+ L Sbjct: 2 IRILIVDDEKPICDLIDMNLSASGYQCAAV---QDGIAALKMIEEEAFDLILLDIMLPGA 58 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G++++ +R + PV ++ ++D+V+GL+ GADDY+ KPF+ EL AR+ A++R Sbjct: 59 DGYDIMEYIR--PLGIPVIFITAKHEVKDRVKGLRLGADDYLVKPFDVVELTARVEAVLR 116 Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 R + L+ GD++V+++A+ V G + LT KE+ ++ L KN L +E Sbjct: 117 RY-NKTEHLLSAGDVTVDVEARMVTKAGRPVVLTNKEFGLLVLFIRNKNVALFRETLYEK 175 Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 +++G + + +D+ + +LR+KL G +N + V+ GY L Sbjct: 176 VWEGEYSGDSRTLDLHVQRLRRKL----GWENSLVAVYKVGYRL 215 >gi|146341626|ref|YP_001206674.1| putative two-component response regulator (QseB/CopT-like) [Bradyrhizobium sp. ORS278] gi|146194432|emb|CAL78457.1| putative two-component response regulator (QseB/CopT-like) [Bradyrhizobium sp. ORS278] Length = 224 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 1/221 (0%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 MR+L++ED+ L+ + L S + V D + + A+ILDLGL D G Sbjct: 1 MRLLVVEDNNELSKLLSQGLASAFYQVDTVSSAADARDALNDISYAAMILDLGLPDEDGL 60 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 VL LR PV +L+ ++D+V GL+SGADDY+ KPF EELVAR++AI+RR Sbjct: 61 SVLTELRRRGDPLPVIVLTARGGLQDRVGGLRSGADDYLVKPFALEELVARLQAILRRPG 120 Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180 + G+L + +++ V G L+ +E ++E+L R+ + K+ +H++ Sbjct: 121 QLLGRSLELGNLVYDTESRQTFVGGAPRTLSARELSVLEILLRRQGRVVPKKAVEDHIFG 180 Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 E ++V++ +LRK+L+ G I T+ G GY++ Sbjct: 181 LTGEVGSNAVEVYVSRLRKQLAE-YGATVVIHTIRGVGYMM 220 >gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 229 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 130/226 (57%), Gaps = 13/226 (5%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 +R+L+++D+ + I + L +E + V GE+ + K +D I+LD+ + + G Sbjct: 4 LRVLVVDDEDKIRQVIGIYLTNEGYYVEEALDGEEALRKFKAESWDLIVLDVMMPKMDGI 63 Query: 61 EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118 V + +R V+K+ P+ +L+ + D++ GL+ GADDY+ KPF+ ELVARI+A++RR Sbjct: 64 TVCQEIRKVSKV--PIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAVLRRV 121 Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173 GH L+ + ++L ++ V V+ I LT KE++++ LL+ + ++E Sbjct: 122 GTEEKKEGH---LLKFPGMCMDLISREVLVKDKPITLTPKEFELLALLAKSTGRSYSREQ 178 Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 L ++ +V+ +D + +LR KL AAG N+I+TVWG GY Sbjct: 179 LLEEVWGFDYYGDVRTVDTHVNRLRDKL-RAAGAGNFIKTVWGVGY 223 >gi|332655316|ref|ZP_08421056.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332515821|gb|EGJ45431.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 229 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 7/224 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPGF 60 ++L++ED++ + + + LK + GED + L + +LD+ L I GF Sbjct: 3 KVLVLEDEENIRSFVVINLKRAGYQTIEAATGEDALVALKENPGIKVALLDIMLPGIDGF 62 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 EV R +R + +L+ + DKV GL +GADDY++KPF+ EL AR+ A+ RR+ Sbjct: 63 EVCRRIRAMDNKIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARVDALFRRTG 122 Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176 G + I +N +T+E G R+ LT EY +++L L++E L+ Sbjct: 123 GEEEETSPDEISQPPFLLNTRNRTLEKNGQRVKLTQVEYGIVKLFMENPGKALSREEILD 182 Query: 177 HLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ G+D E+KI+DV I +LR K+ + Y+ TVWG GY Sbjct: 183 AVW-GKDYFGELKIVDVNIRRLRIKIEDNPTKPTYVNTVWGYGY 225 >gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus pseudintermedius HKU10-03] gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus pseudintermedius HKU10-03] gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus pseudintermedius ED99] Length = 234 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 7/227 (3%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 R+L+++D++++ ++ L+ + V V GE+ ++ K + D I+LD+ L G E Sbjct: 4 RVLVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQKEKETKPDLIVLDVMLPKKDGIE 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119 V + +R K P+ +L+ D+V GL+ GADDY++KPF+ E+VAR++AI+RRS Sbjct: 64 VCKTIRSDKNQVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSSL 123 Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174 + IV G + + D V + LT KE++++ L R+ +T+E Sbjct: 124 VDHVRKEEEDEDIVIGSIRIRPDFFEVYRNDELLELTPKEFELLLYLVERQGRVITREHM 183 Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 LN +++ + +I+DV I LR KL +I+TV G GY L Sbjct: 184 LNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPQFIKTVRGLGYKL 230 >gi|309803486|ref|ZP_07697579.1| response regulator receiver domain protein [Lactobacillus iners LactinV 11V1-d] gi|308164370|gb|EFO66624.1| response regulator receiver domain protein [Lactobacillus iners LactinV 11V1-d] Length = 229 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 11/227 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57 +++L+++DDK + + + LK+EN++ V G + L KF IILD+ + ++ Sbjct: 2 VKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREA--LTKFRMDPSITCIILDIMMPEM 59 Query: 58 PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117 G + ++ +R P+ ++S + DK++GL +GADDY++KPFN E++ARIR+++R Sbjct: 60 SGLDFIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 118 Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172 RS + S LI G L +N D+ V+ + G +I+LT E+ ++ LL+ + Sbjct: 119 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 178 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 ++ K + V + LR K+ A G ++TVWG GY Sbjct: 179 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 225 >gi|307249832|ref|ZP_07531808.1| Transcriptional regulatory protein cpxR [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858134|gb|EFM90214.1| Transcriptional regulatory protein cpxR [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 242 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/237 (33%), Positives = 124/237 (52%), Gaps = 18/237 (7%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 RILL++DD L + +L E F ++ G+D + + +D I+LD+ + + G E Sbjct: 3 RILLVDDDIELTELLAELLSLEGFEIHCVHNGQDALTELELQSYDLILLDVMMPVLNGIE 62 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 L+ LR K STPV +LS D+V GL+ GADDY+ KPFN ELVARI+AI+RR+ Sbjct: 63 TLKQLR-QKHSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTTS 121 Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLR 164 + S +I + S ++K + G +H LTG E+ ++++L Sbjct: 122 NILSNPDVITYSNQSPKENSKQLSFGGVELHPGRQQAIFEGRDLDLTGTEFALLQMLMRN 181 Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221 L++E+ + R P + ID+ I LRKKL + +T+ GRGY+L Sbjct: 182 PGQILSRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 238 >gi|291558626|emb|CBL37426.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] Length = 231 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 126/227 (55%), Gaps = 10/227 (4%) Query: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 +IL+I+D++ +A +E+ LK+EN+ VY D + + + D ILD+ L D+ GF Sbjct: 4 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 63 Query: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121 + + +R K + P+ +L+ DK+ GL GADDY++KPF E+VAR++A +RR + Sbjct: 64 LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 122 Query: 122 HAQSLI---VTGDLSVN---LDAKTVE--VQGHRIHLTGKEYQMIE-LLSLRKNTTLTKE 172 ++ +I + +LS N L+ +T E + G + LT E+ ++ +LS N +E Sbjct: 123 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVILSSAGNVVSIEE 182 Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219 +F D I V I LR+KL++ + YI+T+WG GY Sbjct: 183 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGY 229 >gi|302540139|ref|ZP_07292481.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457757|gb|EFL20850.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 223 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 10/224 (4%) Query: 1 MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60 M +LL+EDD LA ++ L V +D + L +F ++LDLGL D+ G Sbjct: 1 MHVLLVEDDDRLAAALTSALDRLGHQVVRAGRADDALRLKDGADF--VLLDLGLPDMDGL 58 Query: 61 EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120 E LR LR A + PV +++ ++ D +R L+ GADDY+ KPF EL+AR+ A+VRR Sbjct: 59 EALRRLRRAS-AVPVIVVTARAAERDVLRSLRGGADDYLVKPFRTAELIARMEAVVRRGT 117 Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177 A ++ G + ++L + +EV GH + LT +E+ ++ LL+